Query 007337
Match_columns 607
No_of_seqs 292 out of 2193
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 22:12:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 2E-111 3E-116 898.1 66.3 539 57-604 134-709 (716)
2 COG2274 SunT ABC-type bacterio 100.0 2E-102 4E-107 862.5 69.2 570 19-599 95-708 (709)
3 KOG0055 Multidrug/pheromone ex 100.0 4E-100 9E-105 853.4 68.3 541 54-600 648-1226(1228)
4 PRK11174 cysteine/glutathione 100.0 2.6E-93 5.6E-98 799.3 71.6 535 57-602 9-587 (588)
5 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.6E-92 3.5E-97 808.4 72.3 565 19-596 95-709 (710)
6 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.9E-92 6.3E-97 802.8 73.9 564 18-599 80-685 (686)
7 TIGR01193 bacteriocin_ABC ABC- 100.0 3.1E-92 6.7E-97 805.3 72.5 566 19-597 95-707 (708)
8 TIGR03375 type_I_sec_LssB type 100.0 4.4E-91 9.6E-96 794.1 71.4 555 22-588 86-689 (694)
9 TIGR00958 3a01208 Conjugate Tr 100.0 2.5E-90 5.3E-95 786.6 72.7 530 55-596 146-711 (711)
10 KOG0055 Multidrug/pheromone ex 100.0 3.7E-92 8E-97 789.5 52.4 541 55-601 12-590 (1228)
11 COG1132 MdlB ABC-type multidru 100.0 2.3E-89 5E-94 763.2 72.2 527 58-601 4-566 (567)
12 TIGR01846 type_I_sec_HlyB type 100.0 6.1E-89 1.3E-93 775.9 73.4 570 19-600 81-693 (694)
13 PRK11176 lipid transporter ATP 100.0 7E-88 1.5E-92 754.9 73.6 532 58-600 13-580 (582)
14 KOG0054 Multidrug resistance-a 100.0 5.3E-89 1.2E-93 781.9 62.3 551 37-599 153-743 (1381)
15 PRK11160 cysteine/glutathione 100.0 2.9E-87 6.3E-92 745.2 72.1 532 58-598 4-573 (574)
16 PTZ00265 multidrug resistance 100.0 1.4E-87 3E-92 803.8 73.1 532 57-599 812-1465(1466)
17 COG4988 CydD ABC-type transpor 100.0 5.5E-87 1.2E-91 698.4 66.7 517 73-601 3-557 (559)
18 TIGR02203 MsbA_lipidA lipid A 100.0 5.9E-86 1.3E-90 738.4 73.3 532 58-600 2-569 (571)
19 PRK10790 putative multidrug tr 100.0 7E-86 1.5E-90 739.3 73.5 532 57-602 10-578 (592)
20 KOG0056 Heavy metal exporter H 100.0 4.2E-89 9.2E-94 686.9 37.4 517 72-602 217-777 (790)
21 PRK13657 cyclic beta-1,2-gluca 100.0 1.2E-84 2.5E-89 728.4 73.6 532 57-602 6-573 (588)
22 TIGR02204 MsbA_rel ABC transpo 100.0 7.4E-84 1.6E-88 721.9 73.1 533 58-599 6-575 (576)
23 TIGR01192 chvA glucan exporter 100.0 1.3E-83 2.9E-88 716.7 73.8 529 58-600 7-571 (585)
24 KOG0057 Mitochondrial Fe/S clu 100.0 8.7E-85 1.9E-89 670.4 58.0 522 72-602 32-589 (591)
25 PRK10789 putative multidrug tr 100.0 2.4E-83 5.1E-88 713.7 70.3 513 78-601 3-552 (569)
26 TIGR02868 CydC thiol reductant 100.0 1.7E-83 3.7E-88 711.1 67.2 489 60-559 3-529 (529)
27 COG4987 CydC ABC-type transpor 100.0 3E-83 6.4E-88 658.8 61.8 522 67-598 13-572 (573)
28 PLN03232 ABC transporter C fam 100.0 2.4E-83 5.2E-88 774.4 69.7 550 36-600 254-841 (1495)
29 PLN03130 ABC transporter C fam 100.0 7.8E-83 1.7E-87 769.7 70.4 548 37-599 255-840 (1622)
30 TIGR00957 MRP_assoc_pro multi 100.0 1E-82 2.2E-87 770.0 70.4 529 56-598 950-1519(1522)
31 PLN03130 ABC transporter C fam 100.0 4.2E-81 9E-86 754.7 70.3 531 54-600 897-1475(1622)
32 TIGR02857 CydD thiol reductant 100.0 1.1E-80 2.5E-85 688.6 67.7 492 68-571 1-529 (529)
33 TIGR01842 type_I_sec_PrtD type 100.0 3.9E-80 8.5E-85 685.3 69.7 505 66-588 2-543 (544)
34 PTZ00265 multidrug resistance 100.0 5.1E-80 1.1E-84 738.7 73.6 535 54-600 43-729 (1466)
35 PTZ00243 ABC transporter; Prov 100.0 3.9E-80 8.5E-85 745.4 70.2 532 55-601 945-1548(1560)
36 PLN03232 ABC transporter C fam 100.0 5.8E-80 1.3E-84 745.0 68.5 532 54-601 894-1473(1495)
37 COG5265 ATM1 ABC-type transpor 100.0 2.5E-82 5.4E-87 632.0 39.0 457 138-597 2-496 (497)
38 KOG0054 Multidrug resistance-a 100.0 1.7E-79 3.7E-84 703.6 57.2 537 52-599 797-1375(1381)
39 TIGR01271 CFTR_protein cystic 100.0 3.8E-77 8.3E-82 719.3 69.8 468 129-602 936-1455(1490)
40 COG4618 ArpD ABC-type protease 100.0 9.4E-76 2E-80 597.6 51.0 509 63-588 16-561 (580)
41 TIGR00957 MRP_assoc_pro multi 100.0 4.2E-74 9.2E-79 695.0 71.4 527 60-599 307-862 (1522)
42 TIGR01194 cyc_pep_trnsptr cycl 100.0 9.7E-74 2.1E-78 634.3 63.9 497 57-579 4-551 (555)
43 TIGR01271 CFTR_protein cystic 100.0 4.4E-72 9.5E-77 675.4 68.6 554 23-597 22-646 (1490)
44 PTZ00243 ABC transporter; Prov 100.0 5.6E-70 1.2E-74 657.3 71.0 531 55-598 229-880 (1560)
45 PRK10522 multidrug transporter 100.0 9.9E-68 2.2E-72 586.1 63.6 494 61-587 4-539 (547)
46 TIGR00954 3a01203 Peroxysomal 100.0 4.4E-66 9.6E-71 580.7 62.2 505 57-573 78-653 (659)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.6E-48 5.7E-53 390.6 23.9 202 395-599 1-237 (275)
48 COG4178 ABC-type uncharacteriz 100.0 2E-43 4.4E-48 376.9 54.1 443 123-573 91-588 (604)
49 PRK14257 phosphate ABC transpo 100.0 1.8E-45 4E-50 379.5 23.2 190 392-589 76-315 (329)
50 COG1126 GlnQ ABC-type polar am 100.0 2.5E-43 5.4E-48 325.3 18.3 180 396-589 2-227 (240)
51 cd03252 ABCC_Hemolysin The ABC 100.0 3.5E-42 7.7E-47 341.8 24.0 199 397-597 1-235 (237)
52 COG1117 PstB ABC-type phosphat 100.0 6.5E-43 1.4E-47 320.8 14.1 184 395-588 6-238 (253)
53 cd03288 ABCC_SUR2 The SUR doma 100.0 2.9E-41 6.2E-46 338.8 24.5 204 393-599 16-256 (257)
54 COG1135 AbcC ABC-type metal io 100.0 3.4E-42 7.4E-47 333.8 16.5 190 397-597 2-243 (339)
55 cd03253 ABCC_ATM1_transporter 100.0 1.2E-40 2.5E-45 330.7 23.7 199 397-598 1-235 (236)
56 cd03251 ABCC_MsbA MsbA is an e 100.0 1.1E-40 2.4E-45 330.5 22.9 197 397-595 1-233 (234)
57 COG4615 PvdE ABC-type sideroph 100.0 9.7E-38 2.1E-42 309.2 42.8 486 61-580 4-530 (546)
58 cd03254 ABCC_Glucan_exporter_l 100.0 2.6E-40 5.6E-45 326.7 23.2 191 396-589 2-228 (229)
59 cd03244 ABCC_MRP_domain2 Domai 100.0 3.4E-40 7.3E-45 324.1 22.9 184 395-581 1-220 (221)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 4.2E-40 9.1E-45 327.1 23.2 199 397-596 1-235 (238)
61 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.5E-39 7.5E-44 325.7 26.6 218 369-596 15-256 (282)
62 cd03245 ABCC_bacteriocin_expor 100.0 2.1E-39 4.5E-44 318.3 23.1 183 396-580 2-220 (220)
63 COG1125 OpuBA ABC-type proline 100.0 3.1E-40 6.8E-45 310.6 14.7 178 397-588 2-226 (309)
64 COG3840 ThiQ ABC-type thiamine 100.0 2.4E-39 5.2E-44 289.6 16.6 178 397-590 2-222 (231)
65 COG1116 TauB ABC-type nitrate/ 100.0 2.4E-39 5.1E-44 308.4 17.5 167 396-576 3-211 (248)
66 TIGR02314 ABC_MetN D-methionin 100.0 4.1E-39 9E-44 332.7 20.4 190 397-597 2-242 (343)
67 cd03250 ABCC_MRP_domain1 Domai 100.0 8E-39 1.7E-43 310.2 20.9 177 397-575 1-204 (204)
68 COG1124 DppF ABC-type dipeptid 100.0 6.6E-39 1.4E-43 302.2 17.7 188 396-595 3-240 (252)
69 COG1136 SalX ABC-type antimicr 100.0 1.6E-38 3.5E-43 303.0 19.8 171 397-578 2-222 (226)
70 KOG0060 Long-chain acyl-CoA tr 100.0 9.8E-36 2.1E-40 308.6 41.6 444 126-573 130-641 (659)
71 cd03248 ABCC_TAP TAP, the Tran 100.0 3.3E-38 7.2E-43 311.0 21.4 182 394-576 9-226 (226)
72 COG3839 MalK ABC-type sugar tr 100.0 1.4E-38 3.1E-43 321.1 18.8 179 396-588 3-224 (338)
73 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-38 3.5E-43 315.1 18.8 182 397-592 1-231 (235)
74 PRK13631 cbiO cobalt transport 100.0 4.6E-38 1E-42 323.5 21.3 186 395-587 20-265 (320)
75 COG1122 CbiO ABC-type cobalt t 100.0 2.7E-38 5.8E-43 307.7 18.4 180 396-588 3-229 (235)
76 COG1120 FepC ABC-type cobalami 100.0 2.1E-38 4.5E-43 308.2 17.6 179 396-588 2-229 (258)
77 PRK14269 phosphate ABC transpo 100.0 6.4E-38 1.4E-42 312.8 19.9 183 396-588 2-231 (246)
78 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8.2E-38 1.8E-42 302.3 19.9 178 396-588 4-228 (254)
79 PRK11650 ugpC glycerol-3-phosp 100.0 7.5E-38 1.6E-42 326.0 21.1 180 396-588 3-225 (356)
80 PRK13650 cbiO cobalt transport 100.0 7.3E-38 1.6E-42 317.5 20.3 182 396-588 4-230 (279)
81 cd03260 ABC_PstB_phosphate_tra 100.0 1E-37 2.2E-42 307.8 19.1 177 397-585 1-227 (227)
82 PRK11432 fbpC ferric transport 100.0 9.5E-38 2.1E-42 324.3 19.8 179 396-588 6-227 (351)
83 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.3E-37 7.1E-42 299.6 22.0 168 394-582 4-207 (207)
84 PRK14273 phosphate ABC transpo 100.0 2.7E-37 5.8E-42 309.9 20.8 184 395-588 6-239 (254)
85 cd03296 ABC_CysA_sulfate_impor 100.0 2E-37 4.3E-42 307.9 19.2 178 397-588 3-227 (239)
86 PRK13637 cbiO cobalt transport 100.0 2.7E-37 5.9E-42 314.4 20.4 182 397-587 3-234 (287)
87 PRK11153 metN DL-methionine tr 100.0 2.4E-37 5.2E-42 321.9 19.9 181 397-588 2-231 (343)
88 TIGR03265 PhnT2 putative 2-ami 100.0 2.3E-37 5.1E-42 322.0 19.7 179 396-588 4-225 (353)
89 PRK14242 phosphate transporter 100.0 3.6E-37 7.8E-42 308.9 20.3 183 396-588 6-238 (253)
90 PRK13635 cbiO cobalt transport 100.0 2.8E-37 6.1E-42 313.0 19.6 181 396-588 5-230 (279)
91 cd03263 ABC_subfamily_A The AB 100.0 3.7E-37 8E-42 302.3 19.5 177 397-585 1-219 (220)
92 PRK09452 potA putrescine/sperm 100.0 3.3E-37 7.3E-42 322.3 19.8 179 396-588 14-235 (375)
93 PRK10744 pstB phosphate transp 100.0 7.2E-37 1.6E-41 307.6 21.5 185 394-588 11-245 (260)
94 PRK13647 cbiO cobalt transport 100.0 4.4E-37 9.5E-42 311.0 19.8 178 396-586 4-226 (274)
95 PRK14250 phosphate ABC transpo 100.0 1E-36 2.2E-41 303.0 21.7 188 396-596 3-231 (241)
96 cd03219 ABC_Mj1267_LivG_branch 100.0 2.7E-37 5.9E-42 306.6 17.5 178 397-588 1-233 (236)
97 PRK10851 sulfate/thiosulfate t 100.0 4.6E-37 1E-41 319.8 19.8 179 396-588 2-227 (353)
98 PRK13643 cbiO cobalt transport 100.0 6.3E-37 1.4E-41 311.9 20.2 181 397-587 2-233 (288)
99 TIGR03258 PhnT 2-aminoethylpho 100.0 4.6E-37 1E-41 320.1 19.5 180 395-588 4-229 (362)
100 TIGR00960 3a0501s02 Type II (G 100.0 3.2E-37 6.8E-42 301.9 17.1 168 397-576 2-216 (216)
101 cd03259 ABC_Carb_Solutes_like 100.0 3.1E-37 6.8E-42 301.2 17.0 170 397-580 1-213 (213)
102 COG3842 PotA ABC-type spermidi 100.0 2.2E-37 4.7E-42 314.1 16.4 181 395-589 4-228 (352)
103 TIGR00972 3a0107s01c2 phosphat 100.0 5.8E-37 1.3E-41 306.1 19.2 182 397-588 2-233 (247)
104 PRK14245 phosphate ABC transpo 100.0 6E-37 1.3E-41 306.6 19.2 183 396-588 3-235 (250)
105 COG1127 Ttg2A ABC-type transpo 100.0 6.7E-37 1.5E-41 287.1 18.2 190 395-598 7-247 (263)
106 PRK13642 cbiO cobalt transport 100.0 9.1E-37 2E-41 309.3 20.7 183 396-589 4-231 (277)
107 PRK11000 maltose/maltodextrin 100.0 6.9E-37 1.5E-41 321.0 20.2 179 396-588 3-224 (369)
108 PRK13634 cbiO cobalt transport 100.0 7.2E-37 1.6E-41 311.8 19.5 182 397-588 3-236 (290)
109 PRK14236 phosphate transporter 100.0 1.1E-36 2.4E-41 308.1 20.6 185 394-588 23-257 (272)
110 PRK13646 cbiO cobalt transport 100.0 7.9E-37 1.7E-41 311.0 19.6 181 397-588 3-236 (286)
111 PRK13636 cbiO cobalt transport 100.0 7.9E-37 1.7E-41 310.6 19.5 180 396-588 5-232 (283)
112 TIGR02315 ABC_phnC phosphonate 100.0 9.9E-37 2.1E-41 304.0 19.8 177 397-586 2-234 (243)
113 cd03256 ABC_PhnC_transporter A 100.0 1E-36 2.2E-41 303.5 19.6 177 397-586 1-233 (241)
114 PRK14239 phosphate transporter 100.0 1.1E-36 2.3E-41 305.4 19.8 183 396-588 5-237 (252)
115 PRK11247 ssuB aliphatic sulfon 100.0 1.5E-36 3.2E-41 303.4 20.7 174 396-584 12-220 (257)
116 cd03258 ABC_MetN_methionine_tr 100.0 1.1E-36 2.3E-41 301.7 19.4 180 397-587 2-230 (233)
117 cd03294 ABC_Pro_Gly_Bertaine T 100.0 7.9E-37 1.7E-41 308.4 18.6 182 398-593 26-257 (269)
118 PRK14235 phosphate transporter 100.0 1.3E-36 2.8E-41 306.7 20.1 185 394-588 17-252 (267)
119 COG1118 CysA ABC-type sulfate/ 100.0 4.2E-37 9E-42 297.6 15.6 179 396-588 2-228 (345)
120 cd03293 ABC_NrtD_SsuB_transpor 100.0 9.8E-37 2.1E-41 299.2 18.5 176 397-583 1-219 (220)
121 PRK13633 cobalt transporter AT 100.0 1.3E-36 2.8E-41 308.7 20.0 182 396-588 4-234 (280)
122 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.3E-36 5E-41 299.7 21.0 178 397-588 2-222 (236)
123 TIGR01186 proV glycine betaine 100.0 4.8E-37 1E-41 319.0 16.7 166 412-588 6-220 (363)
124 PRK14237 phosphate transporter 100.0 1.9E-36 4.2E-41 305.5 20.5 185 394-588 18-252 (267)
125 PRK13640 cbiO cobalt transport 100.0 2.8E-36 6E-41 306.4 21.8 181 395-587 4-232 (282)
126 cd03226 ABC_cobalt_CbiO_domain 100.0 8.1E-37 1.8E-41 296.4 17.1 167 398-577 1-205 (205)
127 PRK11629 lolD lipoprotein tran 100.0 1.7E-36 3.7E-41 300.1 19.3 175 396-581 5-228 (233)
128 PRK14244 phosphate ABC transpo 100.0 1.3E-36 2.8E-41 304.4 18.5 182 397-588 6-238 (251)
129 cd03290 ABCC_SUR1_N The SUR do 100.0 3E-36 6.5E-41 295.3 20.6 174 398-575 2-218 (218)
130 cd03301 ABC_MalK_N The N-termi 100.0 1.3E-36 2.7E-41 297.0 17.7 170 397-580 1-213 (213)
131 cd03224 ABC_TM1139_LivF_branch 100.0 1.4E-36 3.1E-41 298.6 18.3 177 397-587 1-221 (222)
132 cd03265 ABC_DrrA DrrA is the A 100.0 1.8E-36 3.8E-41 297.4 18.8 175 397-585 1-219 (220)
133 PRK13632 cbiO cobalt transport 100.0 2.4E-36 5.1E-41 305.5 20.2 181 396-588 7-232 (271)
134 PRK14240 phosphate transporter 100.0 2.7E-36 5.8E-41 302.0 20.3 184 395-588 2-235 (250)
135 PRK14274 phosphate ABC transpo 100.0 3E-36 6.5E-41 303.1 20.8 183 396-588 12-244 (259)
136 PRK13644 cbiO cobalt transport 100.0 2.8E-36 6.1E-41 305.1 20.5 179 397-588 2-225 (274)
137 PRK15079 oligopeptide ABC tran 100.0 2.4E-36 5.3E-41 311.9 20.3 192 396-597 8-263 (331)
138 PRK14268 phosphate ABC transpo 100.0 2E-36 4.3E-41 304.1 19.1 183 396-588 12-243 (258)
139 PRK11607 potG putrescine trans 100.0 2.4E-36 5.2E-41 316.5 20.5 180 395-588 18-240 (377)
140 COG3638 ABC-type phosphate/pho 100.0 1.1E-36 2.4E-41 284.9 15.9 179 396-587 3-237 (258)
141 PRK14248 phosphate ABC transpo 100.0 3.3E-36 7.2E-41 304.2 20.6 184 395-588 20-253 (268)
142 PRK14249 phosphate ABC transpo 100.0 3.5E-36 7.7E-41 301.2 20.5 183 396-588 4-236 (251)
143 cd03264 ABC_drug_resistance_li 100.0 2.4E-36 5.3E-41 294.5 18.6 169 397-580 1-211 (211)
144 PRK14251 phosphate ABC transpo 100.0 2.3E-36 4.9E-41 302.7 18.9 183 396-588 4-236 (251)
145 PRK13652 cbiO cobalt transport 100.0 3.5E-36 7.6E-41 305.0 20.2 179 397-588 4-228 (277)
146 PRK09536 btuD corrinoid ABC tr 100.0 2.9E-36 6.2E-41 317.0 20.2 179 396-588 3-229 (402)
147 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.7E-36 3.7E-41 297.1 17.2 169 397-576 1-218 (218)
148 TIGR03411 urea_trans_UrtD urea 100.0 3.9E-36 8.5E-41 299.4 20.0 177 397-587 3-231 (242)
149 PRK14253 phosphate ABC transpo 100.0 3.8E-36 8.3E-41 300.7 19.9 183 396-588 3-234 (249)
150 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.5E-36 5.5E-41 300.6 18.4 181 397-588 1-226 (242)
151 PRK14267 phosphate ABC transpo 100.0 3.4E-36 7.3E-41 301.8 19.2 183 396-588 4-238 (253)
152 TIGR02211 LolD_lipo_ex lipopro 100.0 3.3E-36 7.1E-41 295.8 18.6 170 397-577 2-220 (221)
153 cd03218 ABC_YhbG The ABC trans 100.0 3.6E-36 7.8E-41 297.8 19.0 177 397-587 1-222 (232)
154 cd03268 ABC_BcrA_bacitracin_re 100.0 4E-36 8.6E-41 292.3 18.8 170 397-580 1-208 (208)
155 TIGR00968 3a0106s01 sulfate AB 100.0 5.2E-36 1.1E-40 297.2 19.8 177 397-587 1-220 (237)
156 PRK14256 phosphate ABC transpo 100.0 7.4E-36 1.6E-40 299.1 21.0 184 395-588 3-237 (252)
157 PRK14261 phosphate ABC transpo 100.0 4.8E-36 1E-40 300.6 19.6 183 396-588 6-238 (253)
158 COG2884 FtsE Predicted ATPase 100.0 2.2E-36 4.8E-41 272.9 15.2 173 397-582 2-221 (223)
159 cd03266 ABC_NatA_sodium_export 100.0 5E-36 1.1E-40 293.9 19.0 173 397-580 2-218 (218)
160 PRK14271 phosphate ABC transpo 100.0 9.8E-36 2.1E-40 301.3 21.7 183 396-588 21-252 (276)
161 PRK13648 cbiO cobalt transport 100.0 6.7E-36 1.4E-40 302.0 20.4 181 396-588 7-232 (269)
162 PRK13651 cobalt transporter AT 100.0 6.3E-36 1.4E-40 305.9 20.4 181 397-588 3-255 (305)
163 PRK11831 putative ABC transpor 100.0 6E-36 1.3E-40 302.2 19.9 188 396-597 7-244 (269)
164 PRK13537 nodulation ABC transp 100.0 6.1E-36 1.3E-40 306.7 20.1 180 395-588 6-228 (306)
165 PRK14247 phosphate ABC transpo 100.0 5.4E-36 1.2E-40 299.8 18.9 183 396-588 3-235 (250)
166 PRK11124 artP arginine transpo 100.0 7.1E-36 1.5E-40 297.5 19.6 178 397-588 3-231 (242)
167 PRK09493 glnQ glutamine ABC tr 100.0 6.1E-36 1.3E-40 297.5 19.1 178 397-588 2-226 (240)
168 PRK14270 phosphate ABC transpo 100.0 7.8E-36 1.7E-40 298.7 20.0 183 396-588 4-236 (251)
169 cd03247 ABCC_cytochrome_bd The 100.0 6.6E-36 1.4E-40 283.2 18.4 143 397-580 1-178 (178)
170 cd03235 ABC_Metallic_Cations A 100.0 5E-36 1.1E-40 292.7 18.1 168 398-580 1-213 (213)
171 cd03300 ABC_PotA_N PotA is an 100.0 4.2E-36 9.1E-41 297.0 17.6 178 397-588 1-221 (232)
172 cd03298 ABC_ThiQ_thiamine_tran 100.0 7.2E-36 1.6E-40 291.2 19.0 168 397-580 1-211 (211)
173 PRK14262 phosphate ABC transpo 100.0 9.2E-36 2E-40 298.1 20.1 183 396-588 3-235 (250)
174 PRK10575 iron-hydroxamate tran 100.0 8.4E-36 1.8E-40 300.6 19.9 186 396-596 11-245 (265)
175 PRK14238 phosphate transporter 100.0 1.1E-35 2.5E-40 300.4 20.7 183 396-588 24-256 (271)
176 PRK10619 histidine/lysine/argi 100.0 9.5E-36 2.1E-40 299.1 20.0 181 395-588 4-242 (257)
177 PRK10771 thiQ thiamine transpo 100.0 1.5E-35 3.3E-40 293.1 21.0 177 397-589 2-221 (232)
178 PRK11308 dppF dipeptide transp 100.0 1.2E-35 2.7E-40 306.4 21.0 192 396-597 5-256 (327)
179 PRK10247 putative ABC transpor 100.0 6.6E-36 1.4E-40 294.1 18.1 175 396-583 7-223 (225)
180 PRK14243 phosphate transporter 100.0 1.4E-35 3.1E-40 298.6 20.9 183 396-588 10-249 (264)
181 TIGR03410 urea_trans_UrtE urea 100.0 4.5E-36 9.7E-41 296.6 16.6 176 397-585 1-219 (230)
182 PRK13639 cbiO cobalt transport 100.0 1.1E-35 2.5E-40 301.0 19.8 179 397-588 2-227 (275)
183 PRK14254 phosphate ABC transpo 100.0 2E-35 4.4E-40 300.2 21.6 184 395-588 38-270 (285)
184 PRK09984 phosphonate/organopho 100.0 1.9E-35 4E-40 297.8 21.1 194 396-605 4-258 (262)
185 PRK11231 fecE iron-dicitrate t 100.0 1.3E-35 2.9E-40 297.7 20.0 186 397-597 3-236 (255)
186 PRK13638 cbiO cobalt transport 100.0 1.1E-35 2.4E-40 300.7 19.5 178 397-588 2-226 (271)
187 TIGR02769 nickel_nikE nickel i 100.0 1.8E-35 3.8E-40 298.2 20.8 190 397-596 3-250 (265)
188 PRK13645 cbiO cobalt transport 100.0 1.6E-35 3.4E-40 302.3 20.6 183 395-587 5-240 (289)
189 PRK14259 phosphate ABC transpo 100.0 2.2E-35 4.8E-40 297.9 21.3 184 395-588 12-254 (269)
190 cd03292 ABC_FtsE_transporter F 100.0 7.8E-36 1.7E-40 291.7 17.5 167 397-576 1-214 (214)
191 PRK14266 phosphate ABC transpo 100.0 1.6E-35 3.4E-40 296.4 19.9 183 396-588 3-235 (250)
192 PRK10584 putative ABC transpor 100.0 1.7E-35 3.6E-40 292.1 19.7 173 396-579 6-227 (228)
193 PRK14252 phosphate ABC transpo 100.0 1.7E-35 3.7E-40 298.5 20.2 185 394-588 14-250 (265)
194 PRK11614 livF leucine/isoleuci 100.0 1.3E-35 2.9E-40 294.5 19.0 182 396-587 5-226 (237)
195 PRK11264 putative amino-acid A 100.0 2E-35 4.4E-40 295.7 20.4 178 397-588 4-234 (250)
196 PRK13649 cbiO cobalt transport 100.0 1.5E-35 3.3E-40 301.3 19.9 182 397-588 3-235 (280)
197 TIGR01288 nodI ATP-binding ABC 100.0 1.6E-35 3.4E-40 304.0 20.1 179 396-588 4-225 (303)
198 PRK14260 phosphate ABC transpo 100.0 1.6E-35 3.4E-40 297.7 19.6 183 396-588 7-244 (259)
199 TIGR02673 FtsE cell division A 100.0 8E-36 1.7E-40 291.5 17.0 166 397-575 2-214 (214)
200 cd03299 ABC_ModC_like Archeal 100.0 1.6E-35 3.4E-40 293.3 19.2 177 397-588 1-220 (235)
201 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-35 3.2E-40 296.9 19.3 178 397-588 1-237 (252)
202 PRK11022 dppD dipeptide transp 100.0 1.9E-35 4.1E-40 305.2 20.2 193 397-597 4-255 (326)
203 PRK14275 phosphate ABC transpo 100.0 1.9E-35 4.1E-40 300.8 19.8 184 395-588 38-271 (286)
204 PRK13548 hmuV hemin importer A 100.0 3.1E-35 6.8E-40 295.1 21.1 178 397-588 3-231 (258)
205 PRK13641 cbiO cobalt transport 100.0 2.7E-35 6E-40 299.9 20.9 182 396-588 2-235 (287)
206 PRK10070 glycine betaine trans 100.0 1.6E-35 3.4E-40 311.2 19.7 165 413-588 42-255 (400)
207 cd03225 ABC_cobalt_CbiO_domain 100.0 8.3E-36 1.8E-40 290.8 16.3 166 398-575 1-211 (211)
208 PRK11300 livG leucine/isoleuci 100.0 2E-35 4.4E-40 296.6 19.5 178 396-587 5-243 (255)
209 PRK15112 antimicrobial peptide 100.0 3.1E-35 6.8E-40 296.7 20.6 194 396-600 4-254 (267)
210 PRK11144 modC molybdate transp 100.0 2.5E-35 5.5E-40 307.7 20.5 175 397-589 2-220 (352)
211 PRK10253 iron-enterobactin tra 100.0 3.9E-35 8.5E-40 295.7 21.0 179 395-587 6-233 (265)
212 PRK14255 phosphate ABC transpo 100.0 2.4E-35 5.2E-40 295.5 19.2 183 396-588 5-237 (252)
213 PRK14258 phosphate ABC transpo 100.0 2.8E-35 6.1E-40 296.1 19.8 184 395-588 6-246 (261)
214 PRK14265 phosphate ABC transpo 100.0 5.4E-35 1.2E-39 295.7 21.6 184 395-588 19-259 (274)
215 cd03269 ABC_putative_ATPase Th 100.0 2.3E-35 5.1E-40 287.3 18.2 170 397-580 1-210 (210)
216 TIGR03873 F420-0_ABC_ATP propo 100.0 2.8E-35 6.1E-40 295.5 19.4 177 397-587 2-226 (256)
217 PRK14264 phosphate ABC transpo 100.0 3.9E-35 8.6E-40 301.0 20.8 184 395-588 44-290 (305)
218 PRK14263 phosphate ABC transpo 100.0 3.7E-35 7.9E-40 294.8 20.0 183 396-588 8-246 (261)
219 PRK09473 oppD oligopeptide tra 100.0 2.7E-35 5.9E-40 304.3 19.5 194 396-597 12-263 (330)
220 TIGR03522 GldA_ABC_ATP gliding 100.0 3.4E-35 7.3E-40 301.1 19.8 178 397-588 3-222 (301)
221 TIGR03415 ABC_choXWV_ATP choli 100.0 3.3E-35 7.1E-40 306.6 19.8 171 412-593 37-261 (382)
222 PRK10895 lipopolysaccharide AB 100.0 4.6E-35 1E-39 291.4 19.9 183 396-588 3-227 (241)
223 TIGR01277 thiQ thiamine ABC tr 100.0 4.5E-35 9.8E-40 285.8 19.4 169 397-581 1-212 (213)
224 PRK14246 phosphate ABC transpo 100.0 4.4E-35 9.6E-40 293.5 19.8 184 395-588 9-242 (257)
225 PRK14272 phosphate ABC transpo 100.0 3.7E-35 8.1E-40 294.2 18.9 183 396-588 4-237 (252)
226 PRK14241 phosphate transporter 100.0 3.5E-35 7.6E-40 295.2 18.7 183 396-588 4-243 (258)
227 PRK09544 znuC high-affinity zi 100.0 7.8E-35 1.7E-39 290.4 20.9 183 396-596 4-217 (251)
228 PRK15093 antimicrobial peptide 100.0 5.6E-35 1.2E-39 302.7 20.3 194 396-597 3-260 (330)
229 PRK10908 cell division protein 100.0 6.1E-35 1.3E-39 286.9 18.9 168 397-577 2-216 (222)
230 cd03262 ABC_HisP_GlnQ_permease 100.0 2.8E-35 6.1E-40 287.5 16.4 166 397-576 1-213 (213)
231 PRK13536 nodulation factor exp 100.0 6.6E-35 1.4E-39 302.1 19.9 179 396-588 41-262 (340)
232 cd03223 ABCD_peroxisomal_ALDP 100.0 6E-35 1.3E-39 273.0 17.7 138 397-574 1-163 (166)
233 TIGR01978 sufC FeS assembly AT 100.0 5.2E-35 1.1E-39 291.6 18.2 178 397-586 1-233 (243)
234 PRK11248 tauB taurine transpor 100.0 8.2E-35 1.8E-39 291.3 19.1 172 397-582 2-215 (255)
235 cd03246 ABCC_Protease_Secretio 100.0 6.6E-35 1.4E-39 275.0 16.7 136 397-576 1-173 (173)
236 cd03257 ABC_NikE_OppD_transpor 100.0 1.8E-34 3.8E-39 285.0 20.3 174 397-580 2-228 (228)
237 PRK10418 nikD nickel transport 100.0 2.3E-34 5E-39 288.4 21.4 192 396-599 4-244 (254)
238 TIGR03740 galliderm_ABC gallid 100.0 2E-34 4.2E-39 283.5 20.1 174 397-584 1-210 (223)
239 PRK10419 nikE nickel transport 100.0 1.2E-34 2.6E-39 292.4 18.4 188 397-595 4-249 (268)
240 cd03234 ABCG_White The White s 100.0 7.2E-35 1.6E-39 287.1 16.2 178 397-580 4-226 (226)
241 TIGR02982 heterocyst_DevA ABC 100.0 2E-34 4.3E-39 282.8 18.6 169 397-576 2-219 (220)
242 TIGR01188 drrA daunorubicin re 100.0 1.2E-34 2.6E-39 297.3 17.7 166 412-588 6-214 (302)
243 TIGR02142 modC_ABC molybdenum 100.0 2.3E-34 5E-39 301.0 20.0 171 401-588 4-222 (354)
244 PRK13547 hmuV hemin importer A 100.0 3.6E-34 7.9E-39 288.6 19.9 177 397-587 2-244 (272)
245 PRK11701 phnK phosphonate C-P 100.0 4.9E-34 1.1E-38 286.8 19.7 190 396-594 6-249 (258)
246 PRK15056 manganese/iron transp 100.0 6.4E-34 1.4E-38 287.9 19.7 178 396-587 6-230 (272)
247 COG0444 DppD ABC-type dipeptid 100.0 4.5E-34 9.7E-39 281.7 17.3 191 397-598 2-256 (316)
248 cd03232 ABC_PDR_domain2 The pl 100.0 6.2E-34 1.3E-38 272.9 16.5 150 396-580 3-192 (192)
249 COG1131 CcmA ABC-type multidru 100.0 1.6E-33 3.5E-38 286.0 19.7 180 396-588 4-227 (293)
250 cd03233 ABC_PDR_domain1 The pl 100.0 1.4E-33 3.1E-38 272.6 17.9 156 396-580 3-202 (202)
251 COG1123 ATPase components of v 100.0 1.5E-33 3.3E-38 297.6 19.3 194 396-598 5-257 (539)
252 CHL00131 ycf16 sulfate ABC tra 100.0 3.4E-33 7.3E-38 280.0 20.6 178 396-585 7-239 (252)
253 cd03230 ABC_DR_subfamily_A Thi 100.0 1.6E-33 3.4E-38 265.6 16.3 135 397-576 1-173 (173)
254 cd03228 ABCC_MRP_Like The MRP 100.0 2.2E-33 4.7E-38 264.1 17.1 135 397-575 1-171 (171)
255 PRK09580 sufC cysteine desulfu 100.0 2.6E-33 5.6E-38 280.2 18.3 177 397-585 2-233 (248)
256 TIGR00955 3a01204 The Eye Pigm 100.0 4.8E-34 1E-38 319.7 14.0 184 396-587 17-256 (617)
257 PLN03211 ABC transporter G-25; 100.0 4.6E-33 9.9E-38 311.7 21.5 169 412-587 81-296 (659)
258 cd03297 ABC_ModC_molybdenum_tr 100.0 3.1E-33 6.8E-38 273.1 17.7 164 398-580 3-214 (214)
259 TIGR01184 ntrCD nitrate transp 100.0 4E-33 8.7E-38 275.1 18.4 161 415-586 1-203 (230)
260 TIGR02323 CP_lyasePhnK phospho 100.0 8.5E-33 1.8E-37 277.2 20.9 189 396-594 3-246 (253)
261 cd03213 ABCG_EPDR ABCG transpo 100.0 3.6E-33 7.8E-38 268.0 17.4 150 396-580 3-194 (194)
262 PRK13546 teichoic acids export 100.0 4.9E-33 1.1E-37 279.0 19.0 192 396-598 4-243 (264)
263 PRK15439 autoinducer 2 ABC tra 100.0 4.7E-33 1E-37 306.0 20.4 177 396-587 11-229 (510)
264 COG1123 ATPase components of v 100.0 6.4E-33 1.4E-37 292.9 20.2 194 395-598 279-531 (539)
265 PRK13545 tagH teichoic acids e 100.0 8E-33 1.7E-37 293.4 20.5 190 396-596 21-241 (549)
266 TIGR03608 L_ocin_972_ABC putat 100.0 3.1E-33 6.7E-38 271.6 15.4 159 399-571 1-206 (206)
267 PRK03695 vitamin B12-transport 100.0 1.2E-32 2.7E-37 274.7 19.5 180 398-596 2-230 (248)
268 cd03217 ABC_FeS_Assembly ABC-t 100.0 9.1E-33 2E-37 266.6 17.4 150 397-586 1-192 (200)
269 PRK10261 glutathione transport 100.0 9.8E-33 2.1E-37 309.5 20.3 192 396-598 313-566 (623)
270 cd03229 ABC_Class3 This class 100.0 6E-33 1.3E-37 262.9 15.8 136 397-575 1-178 (178)
271 COG0410 LivF ABC-type branched 100.0 9.3E-33 2E-37 258.9 16.7 185 396-589 3-228 (237)
272 PRK10261 glutathione transport 100.0 8.1E-33 1.8E-37 310.2 19.1 185 396-588 12-259 (623)
273 cd03231 ABC_CcmA_heme_exporter 100.0 1.5E-32 3.3E-37 265.3 18.2 160 397-571 1-198 (201)
274 PRK13549 xylose transporter AT 100.0 6.6E-33 1.4E-37 304.9 17.2 177 396-586 5-231 (506)
275 cd03215 ABC_Carb_Monos_II This 100.0 7.4E-33 1.6E-37 263.2 15.1 136 396-576 4-182 (182)
276 PRK09700 D-allose transporter 100.0 7.3E-33 1.6E-37 305.0 17.3 178 396-587 5-234 (510)
277 COG4619 ABC-type uncharacteriz 100.0 3.3E-33 7.3E-38 246.8 11.3 157 411-577 15-213 (223)
278 TIGR02770 nickel_nikD nickel i 100.0 1.7E-32 3.6E-37 270.9 17.6 173 414-594 1-223 (230)
279 PRK15134 microcin C ABC transp 100.0 1.2E-32 2.7E-37 304.4 18.3 182 396-588 275-516 (529)
280 COG4161 ArtP ABC-type arginine 100.0 8.6E-33 1.9E-37 242.4 12.9 178 396-587 2-230 (242)
281 PRK10762 D-ribose transporter 100.0 2.2E-32 4.7E-37 300.4 18.8 177 396-586 4-229 (501)
282 TIGR00956 3a01205 Pleiotropic 100.0 6.9E-31 1.5E-35 315.6 33.3 181 396-583 759-989 (1394)
283 COG1137 YhbG ABC-type (unclass 100.0 1.1E-32 2.3E-37 250.8 13.1 186 396-588 4-229 (243)
284 PRK10938 putative molybdenum t 100.0 3.3E-32 7.1E-37 298.5 19.7 175 397-588 4-225 (490)
285 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.1E-32 4.7E-37 268.7 16.0 170 397-580 23-224 (224)
286 cd03267 ABC_NatA_like Similar 100.0 3.4E-32 7.3E-37 269.6 17.1 158 412-580 34-236 (236)
287 COG4598 HisP ABC-type histidin 100.0 9.1E-33 2E-37 246.5 11.5 179 396-588 6-242 (256)
288 PRK13540 cytochrome c biogenes 100.0 3.6E-32 7.8E-37 262.6 16.7 160 397-570 2-198 (200)
289 COG4175 ProV ABC-type proline/ 100.0 1.4E-32 3E-37 266.3 13.6 182 396-588 4-255 (386)
290 PRK11288 araG L-arabinose tran 100.0 3.9E-32 8.4E-37 298.5 19.0 172 396-581 4-223 (501)
291 COG4172 ABC-type uncharacteriz 100.0 1.2E-31 2.6E-36 267.1 20.4 190 395-596 275-527 (534)
292 PRK13538 cytochrome c biogenes 100.0 5.2E-32 1.1E-36 262.3 17.2 161 397-571 2-202 (204)
293 PRK15134 microcin C ABC transp 100.0 6.5E-32 1.4E-36 298.7 20.3 185 396-588 5-247 (529)
294 COG4555 NatA ABC-type Na+ tran 100.0 9.9E-33 2.2E-37 251.3 11.2 179 397-588 2-223 (245)
295 PRK13543 cytochrome c biogenes 100.0 7.5E-32 1.6E-36 263.1 18.2 164 396-573 11-212 (214)
296 PRK10982 galactose/methyl gala 100.0 2.9E-32 6.2E-37 298.9 16.9 174 399-586 1-222 (491)
297 cd03214 ABC_Iron-Siderophores_ 100.0 3.2E-32 7E-37 258.3 14.8 162 398-580 1-180 (180)
298 PRK15064 ABC transporter ATP-b 100.0 1.6E-31 3.4E-36 295.7 21.3 180 395-590 318-528 (530)
299 TIGR03269 met_CoM_red_A2 methy 100.0 8.7E-32 1.9E-36 297.2 19.0 177 397-587 1-258 (520)
300 PRK11819 putative ABC transpor 100.0 1.1E-31 2.5E-36 297.8 19.9 185 396-587 6-250 (556)
301 TIGR03269 met_CoM_red_A2 methy 100.0 1E-31 2.2E-36 296.7 19.4 186 396-587 279-517 (520)
302 PRK10535 macrolide transporter 100.0 1.6E-31 3.5E-36 300.7 20.8 180 396-586 4-231 (648)
303 TIGR02633 xylG D-xylose ABC tr 100.0 7.2E-32 1.6E-36 296.6 17.6 176 397-585 2-228 (500)
304 PRK13539 cytochrome c biogenes 100.0 1.6E-31 3.4E-36 259.5 17.7 162 397-573 3-200 (207)
305 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.3E-31 2.9E-36 297.2 19.3 185 396-587 4-248 (552)
306 cd03216 ABC_Carb_Monos_I This 100.0 1.5E-31 3.3E-36 249.2 16.2 153 397-578 1-162 (163)
307 TIGR03771 anch_rpt_ABC anchore 100.0 1.2E-31 2.6E-36 263.3 16.1 164 420-596 1-209 (223)
308 PRK15064 ABC transporter ATP-b 100.0 2.4E-31 5.1E-36 294.2 20.0 176 397-587 2-242 (530)
309 COG4181 Predicted ABC-type tra 100.0 1.1E-31 2.3E-36 238.0 13.5 173 396-579 6-227 (228)
310 TIGR02324 CP_lyasePhnL phospho 100.0 2.3E-31 5.1E-36 261.8 17.5 165 397-571 2-222 (224)
311 COG4608 AppF ABC-type oligopep 100.0 1.7E-31 3.8E-36 258.0 16.1 187 396-597 4-211 (268)
312 PRK13541 cytochrome c biogenes 100.0 2E-31 4.2E-36 256.4 16.3 158 397-569 2-193 (195)
313 PRK13549 xylose transporter AT 100.0 9.6E-32 2.1E-36 295.7 16.1 181 396-586 259-493 (506)
314 TIGR01189 ccmA heme ABC export 100.0 1.9E-31 4.1E-36 257.2 16.0 159 397-570 1-197 (198)
315 TIGR01257 rim_protein retinal- 100.0 6.1E-29 1.3E-33 299.1 40.5 183 395-589 1936-2161(2272)
316 TIGR01257 rim_protein retinal- 100.0 7.3E-31 1.6E-35 315.6 21.7 182 395-588 927-1150(2272)
317 cd03237 ABC_RNaseL_inhibitor_d 100.0 8.9E-31 1.9E-35 260.0 17.5 170 404-586 1-206 (246)
318 COG4148 ModC ABC-type molybdat 100.0 4.3E-31 9.3E-36 251.8 13.0 160 417-588 16-219 (352)
319 PRK15177 Vi polysaccharide exp 100.0 1E-30 2.2E-35 254.5 15.4 165 414-588 2-193 (213)
320 PRK09700 D-allose transporter 100.0 1.1E-30 2.3E-35 287.9 16.7 172 396-582 265-493 (510)
321 TIGR01166 cbiO cobalt transpor 100.0 8.2E-31 1.8E-35 251.1 13.7 139 412-561 5-189 (190)
322 COG4172 ABC-type uncharacteriz 100.0 2.2E-30 4.9E-35 258.0 15.9 198 396-601 6-263 (534)
323 COG0411 LivG ABC-type branched 100.0 3.5E-30 7.6E-35 243.5 15.4 178 397-588 5-240 (250)
324 COG4559 ABC-type hemin transpo 100.0 6.7E-30 1.5E-34 234.7 16.5 178 397-588 2-231 (259)
325 TIGR02633 xylG D-xylose ABC tr 100.0 2.3E-30 4.9E-35 284.7 16.2 179 396-584 257-489 (500)
326 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 5.5E-30 1.2E-34 233.4 15.2 136 397-575 1-144 (144)
327 PRK11288 araG L-arabinose tran 100.0 2.6E-30 5.5E-35 284.1 15.6 174 396-586 257-484 (501)
328 PRK11819 putative ABC transpor 100.0 1.3E-29 2.8E-34 281.4 21.0 179 395-588 323-534 (556)
329 PLN03073 ABC transporter F fam 100.0 1.7E-29 3.7E-34 284.4 21.0 175 395-585 507-712 (718)
330 cd03238 ABC_UvrA The excision 100.0 1.1E-29 2.3E-34 237.9 16.0 146 411-575 7-165 (176)
331 TIGR01187 potA spermidine/putr 100.0 4.2E-30 9.2E-35 265.7 14.7 139 439-588 44-191 (325)
332 PRK10636 putative ABC transpor 100.0 2E-29 4.3E-34 283.1 21.2 175 395-586 311-516 (638)
333 COG4525 TauB ABC-type taurine 100.0 4.4E-30 9.5E-35 232.6 12.7 173 397-581 4-218 (259)
334 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.3E-29 5.1E-34 279.3 21.0 177 396-587 322-531 (552)
335 COG1129 MglA ABC-type sugar tr 100.0 2.3E-29 5E-34 264.3 19.6 174 396-581 8-228 (500)
336 PRK10762 D-ribose transporter 100.0 5.7E-30 1.2E-34 281.3 15.6 172 396-585 257-482 (501)
337 PRK13409 putative ATPase RIL; 100.0 1.8E-29 4E-34 279.3 18.7 169 396-581 340-536 (590)
338 PRK11147 ABC transporter ATPas 100.0 3.9E-29 8.5E-34 281.3 21.6 175 396-586 319-527 (635)
339 PLN03140 ABC transporter G fam 100.0 3.3E-29 7.1E-34 300.1 22.2 181 396-583 867-1106(1470)
340 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.5E-29 3.2E-34 252.3 14.1 166 400-580 4-220 (255)
341 PRK10938 putative molybdenum t 100.0 2.2E-29 4.8E-34 276.2 15.5 172 395-579 259-484 (490)
342 PRK15439 autoinducer 2 ABC tra 100.0 2.3E-29 5.1E-34 276.7 15.4 175 396-588 268-493 (510)
343 KOG0064 Peroxisomal long-chain 100.0 7.9E-26 1.7E-30 231.8 39.7 477 74-571 122-681 (728)
344 PF00664 ABC_membrane: ABC tra 100.0 1.7E-25 3.7E-30 224.5 40.1 273 73-351 2-275 (275)
345 PRK10636 putative ABC transpor 100.0 3.9E-28 8.5E-33 272.6 21.0 174 397-587 2-236 (638)
346 PRK10982 galactose/methyl gala 100.0 1.7E-28 3.8E-33 269.0 16.9 177 396-584 250-477 (491)
347 PRK11147 ABC transporter ATPas 100.0 9.6E-28 2.1E-32 270.1 20.9 183 396-587 3-243 (635)
348 cd03270 ABC_UvrA_I The excisio 100.0 5.3E-28 1.2E-32 237.5 15.3 167 411-580 7-226 (226)
349 cd03222 ABC_RNaseL_inhibitor T 100.0 4.6E-28 9.9E-33 227.1 12.9 138 400-577 4-151 (177)
350 cd03271 ABC_UvrA_II The excisi 99.9 1.5E-27 3.3E-32 236.5 14.6 94 489-582 157-261 (261)
351 PLN03073 ABC transporter F fam 99.9 6.5E-27 1.4E-31 263.5 21.2 186 395-587 176-431 (718)
352 COG0488 Uup ATPase components 99.9 2.4E-27 5.2E-32 255.7 17.0 184 396-588 3-241 (530)
353 TIGR00956 3a01205 Pleiotropic 99.9 2.9E-27 6.4E-32 284.4 18.2 168 412-586 74-299 (1394)
354 cd00267 ABC_ATPase ABC (ATP-bi 99.9 3.7E-27 8E-32 218.6 14.5 148 398-575 1-157 (157)
355 COG3845 ABC-type uncharacteriz 99.9 4E-27 8.6E-32 242.3 15.5 170 396-579 4-221 (501)
356 COG4136 ABC-type uncharacteriz 99.9 2.9E-27 6.3E-32 205.2 11.5 161 396-570 2-206 (213)
357 COG4604 CeuD ABC-type enteroch 99.9 1.7E-27 3.8E-32 216.2 9.4 177 397-588 2-226 (252)
358 PLN03140 ABC transporter G fam 99.9 3.9E-27 8.5E-32 282.3 14.9 175 412-586 178-426 (1470)
359 PRK13409 putative ATPase RIL; 99.9 1.3E-26 2.9E-31 256.6 15.0 156 401-574 78-287 (590)
360 KOG0061 Transporter, ABC super 99.9 4.2E-26 9.1E-31 253.1 17.7 186 395-587 24-260 (613)
361 COG0488 Uup ATPase components 99.9 4.6E-25 9.9E-30 238.1 23.6 178 395-588 320-526 (530)
362 COG1119 ModF ABC-type molybden 99.9 1.2E-25 2.5E-30 212.8 15.7 173 395-581 30-256 (257)
363 COG1101 PhnK ABC-type uncharac 99.9 2.3E-26 5E-31 211.9 9.8 167 411-579 18-230 (263)
364 COG4152 ABC-type uncharacteriz 99.9 2.4E-25 5.3E-30 208.9 13.9 185 396-590 2-222 (300)
365 COG4167 SapF ABC-type antimicr 99.9 5.1E-25 1.1E-29 197.5 12.4 177 413-601 27-255 (267)
366 COG4674 Uncharacterized ABC-ty 99.9 1E-24 2.2E-29 198.0 14.3 179 396-588 5-236 (249)
367 cd03278 ABC_SMC_barmotin Barmo 99.9 1.9E-24 4.2E-29 207.3 13.7 131 416-573 14-190 (197)
368 COG4107 PhnK ABC-type phosphon 99.9 4.3E-24 9.4E-29 190.0 13.3 192 396-598 6-253 (258)
369 COG1134 TagH ABC-type polysacc 99.9 1.7E-23 3.6E-28 198.6 17.3 167 411-588 39-237 (249)
370 cd03279 ABC_sbcCD SbcCD and ot 99.9 5.6E-24 1.2E-28 207.3 12.2 156 396-575 5-210 (213)
371 COG0396 sufC Cysteine desulfur 99.9 4.9E-23 1.1E-27 192.7 17.6 180 396-587 3-233 (251)
372 PRK00349 uvrA excinuclease ABC 99.9 1.1E-23 2.4E-28 240.8 15.5 104 489-592 818-932 (943)
373 PF00005 ABC_tran: ABC transpo 99.9 6.3E-24 1.4E-28 192.3 9.5 100 415-529 1-137 (137)
374 TIGR00630 uvra excinuclease AB 99.9 1.2E-22 2.5E-27 232.0 17.4 97 489-585 816-923 (924)
375 COG4586 ABC-type uncharacteriz 99.9 1.2E-22 2.7E-27 193.8 13.6 178 413-595 38-254 (325)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 9.9E-23 2.1E-27 203.1 13.4 117 455-572 105-234 (243)
377 PRK00635 excinuclease ABC subu 99.9 3.8E-22 8.3E-27 237.1 19.5 101 489-589 797-908 (1809)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.8E-23 1.3E-27 199.3 9.4 164 396-573 5-204 (212)
379 COG4133 CcmA ABC-type transpor 99.9 2.2E-22 4.8E-27 182.4 9.2 160 397-571 3-201 (209)
380 cd03240 ABC_Rad50 The catalyti 99.9 6.6E-22 1.4E-26 191.0 13.1 129 419-573 17-197 (204)
381 COG4778 PhnL ABC-type phosphon 99.9 2.2E-22 4.7E-27 178.7 7.8 168 396-573 4-227 (235)
382 cd03273 ABC_SMC2_euk Eukaryoti 99.9 8.5E-22 1.8E-26 197.1 12.9 148 425-572 25-242 (251)
383 KOG0927 Predicted transporter 99.9 1.2E-21 2.6E-26 202.7 9.3 173 396-582 389-591 (614)
384 cd03275 ABC_SMC1_euk Eukaryoti 99.8 2.6E-21 5.7E-26 192.9 10.1 110 464-573 108-233 (247)
385 KOG0927 Predicted transporter 99.8 2.6E-20 5.7E-25 192.9 13.5 189 395-588 74-310 (614)
386 KOG0059 Lipid exporter ABCA1 a 99.8 2.2E-18 4.7E-23 199.8 30.9 185 395-592 563-792 (885)
387 COG1129 MglA ABC-type sugar tr 99.8 5.1E-20 1.1E-24 194.1 13.3 178 396-581 263-484 (500)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.8 8.2E-20 1.8E-24 175.4 13.3 81 495-575 104-192 (198)
389 cd03239 ABC_SMC_head The struc 99.8 8.7E-20 1.9E-24 172.0 13.1 86 482-573 82-172 (178)
390 KOG0065 Pleiotropic drug resis 99.8 4.3E-20 9.3E-25 209.4 9.8 167 411-584 803-1018(1391)
391 KOG0062 ATPase component of AB 99.8 6.5E-20 1.4E-24 189.0 7.5 180 394-588 78-286 (582)
392 cd01128 rho_factor Transcripti 99.8 2.8E-19 6E-24 176.4 6.5 109 480-597 109-227 (249)
393 KOG0062 ATPase component of AB 99.8 2.6E-18 5.5E-23 177.3 13.8 186 395-601 361-576 (582)
394 COG0178 UvrA Excinuclease ATPa 99.8 4.7E-18 1E-22 183.8 14.9 101 493-593 815-925 (935)
395 COG4138 BtuD ABC-type cobalami 99.8 2.1E-19 4.5E-24 160.5 1.9 174 397-588 4-222 (248)
396 PRK00635 excinuclease ABC subu 99.7 1.6E-17 3.5E-22 198.1 15.9 106 483-589 1683-1798(1809)
397 cd03277 ABC_SMC5_euk Eukaryoti 99.7 2.5E-17 5.4E-22 159.9 13.7 108 466-575 94-211 (213)
398 COG4170 SapD ABC-type antimicr 99.7 1.5E-17 3.2E-22 152.8 10.7 190 398-597 5-260 (330)
399 KOG0066 eIF2-interacting prote 99.7 3.6E-17 7.9E-22 164.8 12.6 173 396-584 586-788 (807)
400 cd03241 ABC_RecN RecN ATPase i 99.7 4.2E-17 9.1E-22 165.2 13.1 76 500-575 170-249 (276)
401 COG1245 Predicted ATPase, RNas 99.7 4.4E-17 9.5E-22 165.7 12.8 160 401-573 340-531 (591)
402 COG3845 ABC-type uncharacteriz 99.7 7.5E-17 1.6E-21 166.8 14.7 180 394-584 255-489 (501)
403 PRK00349 uvrA excinuclease ABC 99.7 4.4E-17 9.6E-22 186.9 12.8 138 446-588 432-586 (943)
404 TIGR00606 rad50 rad50. This fa 99.7 1.1E-16 2.3E-21 193.8 13.3 119 448-572 1153-1289(1311)
405 TIGR00630 uvra excinuclease AB 99.7 8.3E-17 1.8E-21 184.3 11.7 100 489-588 475-584 (924)
406 cd03280 ABC_MutS2 MutS2 homolo 99.7 4.5E-17 9.8E-22 157.1 6.0 144 415-580 17-172 (200)
407 cd03227 ABC_Class2 ABC-type Cl 99.7 4.9E-16 1.1E-20 144.6 11.8 73 501-573 78-155 (162)
408 COG1245 Predicted ATPase, RNas 99.6 4.3E-16 9.3E-21 158.6 8.4 154 401-572 79-287 (591)
409 KOG2355 Predicted ABC-type tra 99.6 7E-15 1.5E-19 135.1 13.1 188 394-586 11-236 (291)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.6 7.6E-16 1.7E-20 150.4 7.4 151 411-581 16-175 (222)
411 COG2401 ABC-type ATPase fused 99.6 9.1E-15 2E-19 147.2 14.0 154 412-577 396-588 (593)
412 cd03242 ABC_RecF RecF is a rec 99.6 8.9E-15 1.9E-19 147.8 11.5 88 486-576 165-269 (270)
413 KOG0065 Pleiotropic drug resis 99.6 4.8E-15 1E-19 168.9 10.2 169 412-587 128-351 (1391)
414 PHA02562 46 endonuclease subun 99.5 7.2E-15 1.6E-19 164.6 7.6 106 469-576 432-555 (562)
415 KOG0066 eIF2-interacting prote 99.5 5.9E-14 1.3E-18 141.9 7.1 180 396-582 264-494 (807)
416 cd03243 ABC_MutS_homologs The 99.4 1.7E-13 3.8E-18 132.4 8.5 90 495-585 86-177 (202)
417 cd03283 ABC_MutS-like MutS-lik 99.4 8.7E-13 1.9E-17 126.7 9.4 116 412-565 14-154 (199)
418 TIGR00634 recN DNA repair prot 99.4 7.4E-13 1.6E-17 147.2 9.3 77 499-575 439-519 (563)
419 PRK10869 recombination and rep 99.4 2E-12 4.2E-17 142.6 10.2 76 500-575 430-509 (553)
420 PF02463 SMC_N: RecF/RecN/SMC 99.3 4.9E-12 1.1E-16 124.1 11.4 73 500-572 136-212 (220)
421 cd03282 ABC_MSH4_euk MutS4 hom 99.3 1.2E-11 2.6E-16 119.1 10.4 141 411-566 15-158 (204)
422 cd03284 ABC_MutS1 MutS1 homolo 99.3 9.9E-12 2.1E-16 121.0 9.1 149 412-585 18-179 (216)
423 PRK11098 microcin B17 transpor 99.3 1E-07 2.3E-12 99.9 38.6 280 82-379 104-397 (409)
424 PRK12369 putative transporter; 99.2 2.6E-07 5.7E-12 95.0 38.5 281 81-377 28-321 (326)
425 COG0178 UvrA Excinuclease ATPa 99.2 6.3E-11 1.4E-15 129.2 11.9 139 450-589 428-579 (935)
426 PF06472 ABC_membrane_2: ABC t 99.2 1.2E-07 2.6E-12 96.4 34.1 226 76-311 33-263 (281)
427 PRK01156 chromosome segregatio 99.1 9E-11 2E-15 138.4 10.1 76 497-572 798-883 (895)
428 KOG0063 RNAse L inhibitor, ABC 99.1 1.5E-10 3.2E-15 117.6 9.3 173 403-587 342-548 (592)
429 PF13748 ABC_membrane_3: ABC t 99.1 3.4E-07 7.4E-12 87.4 30.5 178 63-260 3-180 (237)
430 PRK03918 chromosome segregatio 99.1 1.7E-10 3.6E-15 136.3 9.4 75 499-573 787-868 (880)
431 TIGR02168 SMC_prok_B chromosom 99.1 2.2E-10 4.8E-15 139.6 8.3 75 497-571 1086-1164(1179)
432 TIGR00618 sbcc exonuclease Sbc 99.0 7.5E-10 1.6E-14 132.1 10.6 77 498-574 948-1036(1042)
433 cd00820 PEPCK_HprK Phosphoenol 99.0 2.9E-10 6.2E-15 96.3 3.8 45 413-459 3-77 (107)
434 PRK00064 recF recombination pr 99.0 1.2E-09 2.7E-14 114.7 8.9 76 499-576 272-359 (361)
435 TIGR02169 SMC_prok_A chromosom 99.0 1.1E-09 2.4E-14 133.4 9.3 76 498-573 1072-1151(1164)
436 cd03281 ABC_MSH5_euk MutS5 hom 98.9 5.4E-09 1.2E-13 101.6 11.1 63 503-565 93-160 (213)
437 smart00534 MUTSac ATPase domai 98.9 1.5E-09 3.4E-14 103.2 6.9 71 494-567 55-130 (185)
438 TIGR01069 mutS2 MutS2 family p 98.9 6.6E-09 1.4E-13 118.6 12.3 130 396-562 295-448 (771)
439 KOG0063 RNAse L inhibitor, ABC 98.9 1.5E-09 3.3E-14 110.4 5.6 135 423-572 98-287 (592)
440 cd01124 KaiC KaiC is a circadi 98.8 2.8E-08 6E-13 94.7 11.7 140 428-573 2-164 (187)
441 PRK02224 chromosome segregatio 98.8 6E-09 1.3E-13 123.0 8.6 76 499-574 780-869 (880)
442 PRK10246 exonuclease subunit S 98.8 1E-08 2.2E-13 121.8 9.3 75 498-572 947-1031(1047)
443 PRK13695 putative NTPase; Prov 98.8 4.3E-09 9.4E-14 99.2 4.7 81 496-579 74-156 (174)
444 PRK00409 recombination and DNA 98.8 1.1E-08 2.3E-13 117.2 8.7 82 494-576 384-467 (782)
445 cd03287 ABC_MSH3_euk MutS3 hom 98.7 1.4E-08 3.1E-13 98.8 6.7 120 412-565 18-160 (222)
446 PRK10733 hflB ATP-dependent me 98.7 1.6E-09 3.5E-14 122.0 -1.6 161 244-438 30-198 (644)
447 PRK08533 flagellar accessory p 98.7 2.1E-07 4.5E-12 91.6 12.8 143 422-572 21-184 (230)
448 TIGR02858 spore_III_AA stage I 98.6 9.6E-08 2.1E-12 95.7 7.8 69 508-586 186-268 (270)
449 TIGR00611 recf recF protein. A 98.6 8.7E-08 1.9E-12 100.7 6.8 63 499-563 274-345 (365)
450 PF05992 SbmA_BacA: SbmA/BacA- 98.5 0.00098 2.1E-08 66.8 34.3 226 135-375 73-311 (315)
451 PTZ00132 GTP-binding nuclear p 98.5 5.7E-08 1.2E-12 94.8 4.5 42 505-546 157-203 (215)
452 cd03286 ABC_MSH6_euk MutS6 hom 98.5 5.9E-07 1.3E-11 87.3 8.7 134 412-565 17-159 (218)
453 PRK14079 recF recombination pr 98.4 4.3E-07 9.4E-12 95.0 8.1 75 499-578 262-345 (349)
454 PRK07721 fliI flagellum-specif 98.4 1.6E-06 3.5E-11 92.6 12.3 57 527-584 276-340 (438)
455 PRK06067 flagellar accessory p 98.4 4.6E-06 1E-10 82.5 14.1 133 421-573 21-187 (234)
456 PRK13830 conjugal transfer pro 98.3 4.8E-07 1E-11 104.9 6.2 67 515-581 649-727 (818)
457 TIGR02680 conserved hypothetic 98.3 1.3E-06 2.9E-11 106.2 7.7 62 497-560 1244-1317(1353)
458 COG0419 SbcC ATPase involved i 98.3 2.3E-06 4.9E-11 101.1 9.1 77 498-574 813-898 (908)
459 cd01120 RecA-like_NTPases RecA 98.2 7.9E-06 1.7E-10 75.4 10.1 64 499-562 66-140 (165)
460 TIGR00767 rho transcription te 98.2 2.5E-06 5.5E-11 88.7 6.6 69 363-438 102-181 (415)
461 PRK06793 fliI flagellum-specif 98.1 1.3E-05 2.8E-10 85.0 11.0 162 396-581 130-305 (432)
462 cd01125 repA Hexameric Replica 98.1 1.3E-06 2.9E-11 86.7 2.3 124 425-559 1-159 (239)
463 TIGR02788 VirB11 P-type DNA tr 98.1 1.8E-06 4E-11 88.9 2.9 72 508-586 208-280 (308)
464 PF13558 SbcCD_C: Putative exo 98.0 1.4E-05 3E-10 66.2 5.5 59 487-545 19-90 (90)
465 cd01131 PilT Pilus retraction 97.9 6.7E-06 1.5E-10 79.1 3.9 56 510-571 66-121 (198)
466 smart00382 AAA ATPases associa 97.9 0.00023 4.9E-09 63.2 13.2 66 493-558 53-125 (148)
467 PF13304 AAA_21: AAA domain; P 97.8 7.2E-05 1.6E-09 74.3 8.3 64 499-562 235-302 (303)
468 PRK13657 cyclic beta-1,2-gluca 97.7 0.16 3.4E-06 57.5 40.1 86 67-163 12-97 (588)
469 TIGR02655 circ_KaiC circadian 97.7 2.2E-06 4.8E-11 93.8 -4.4 65 498-572 113-190 (484)
470 COG1195 RecF Recombinational D 97.7 0.00014 3E-09 74.9 8.7 76 500-577 275-362 (363)
471 TIGR03375 type_I_sec_LssB type 97.6 0.25 5.5E-06 57.0 40.5 41 127-167 192-232 (694)
472 COG1196 Smc Chromosome segrega 97.6 7.9E-05 1.7E-09 90.2 5.7 86 483-571 1052-1141(1163)
473 TIGR00958 3a01208 Conjugate Tr 97.5 0.31 6.7E-06 56.4 39.8 32 132-163 211-242 (711)
474 COG3910 Predicted ATPase [Gene 97.5 0.00083 1.8E-08 62.1 10.4 83 500-585 129-214 (233)
475 PRK06995 flhF flagellar biosyn 97.5 8.6E-05 1.9E-09 80.0 4.7 123 418-560 249-403 (484)
476 TIGR01846 type_I_sec_HlyB type 97.5 0.32 6.9E-06 56.2 40.0 31 413-443 456-490 (694)
477 PF09818 ABC_ATPase: Predicted 97.5 0.00081 1.8E-08 70.4 10.6 156 402-576 227-416 (448)
478 KOG0964 Structural maintenance 97.3 0.00012 2.6E-09 81.5 3.0 74 499-572 1096-1173(1200)
479 PRK05399 DNA mismatch repair p 97.2 0.0017 3.8E-08 75.8 11.1 135 412-567 595-738 (854)
480 TIGR03796 NHPM_micro_ABC1 NHPM 97.2 0.72 1.6E-05 53.5 36.0 154 123-280 195-352 (710)
481 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.77 1.7E-05 53.0 40.0 39 125-163 179-217 (686)
482 TIGR01420 pilT_fam pilus retra 97.2 0.0003 6.6E-09 73.6 3.8 55 509-569 186-240 (343)
483 TIGR01193 bacteriocin_ABC ABC- 97.2 0.79 1.7E-05 53.1 40.2 34 129-162 203-236 (708)
484 TIGR02868 CydC thiol reductant 97.1 0.67 1.4E-05 51.7 40.0 35 131-165 62-96 (529)
485 PRK11176 lipid transporter ATP 97.1 0.74 1.6E-05 52.0 40.3 33 412-444 341-377 (582)
486 TIGR03881 KaiC_arch_4 KaiC dom 97.1 0.0065 1.4E-07 59.8 12.5 146 421-572 16-188 (229)
487 TIGR03238 dnd_assoc_3 dnd syst 97.1 0.00025 5.4E-09 75.4 2.1 26 413-438 20-45 (504)
488 COG3044 Predicted ATPase of th 97.1 0.0026 5.6E-08 65.4 9.2 146 420-577 238-412 (554)
489 cd02023 UMPK Uridine monophosp 97.0 0.00067 1.5E-08 65.2 4.1 94 427-534 1-114 (198)
490 TIGR01192 chvA glucan exporter 97.0 1 2.2E-05 51.0 40.8 39 125-163 59-97 (585)
491 TIGR00152 dephospho-CoA kinase 97.0 0.00061 1.3E-08 64.9 3.4 69 504-574 61-133 (188)
492 TIGR01842 type_I_sec_PrtD type 96.9 0.98 2.1E-05 50.6 38.3 28 134-161 58-85 (544)
493 cd00009 AAA The AAA+ (ATPases 96.9 0.007 1.5E-07 54.0 9.6 54 506-560 72-131 (151)
494 TIGR02203 MsbA_lipidA lipid A 96.8 1.2 2.7E-05 50.1 40.3 121 125-249 57-181 (571)
495 TIGR02204 MsbA_rel ABC transpo 96.8 1.3 2.9E-05 49.8 39.6 32 132-163 68-99 (576)
496 KOG0933 Structural maintenance 96.8 0.00097 2.1E-08 74.9 3.7 82 489-570 1065-1156(1174)
497 TIGR00954 3a01203 Peroxysomal 96.8 1.5 3.3E-05 50.2 35.0 136 121-258 138-275 (659)
498 COG1133 SbmA ABC-type long-cha 96.7 0.78 1.7E-05 45.6 33.4 53 325-377 339-391 (405)
499 PRK09183 transposase/IS protei 96.6 0.0073 1.6E-07 60.6 8.6 43 516-558 162-205 (259)
500 TIGR03185 DNA_S_dndD DNA sulfu 96.6 0.0037 8.1E-08 71.3 6.9 60 499-561 550-616 (650)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-111 Score=898.09 Aligned_cols=539 Identities=53% Similarity=0.865 Sum_probs=514.1
Q ss_pred hHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (607)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (607)
.+++++.+.+++|+++..+.++.+++.+..+..|++++.++|.+....+ ....+...+..+.+++++.+++..
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~-------~~~~~~~~~~~l~~l~~~~a~~~~ 206 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD-------SADALKRACTILLGLFLIGALANA 206 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999998876111 134455677888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (607)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 216 (607)
.+.+++...++++..++|..+|+++++++++|||++.+||+++|++.|+..+.+.+..++...+.+.++.++++++|+++
T Consensus 207 ~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~ 286 (716)
T KOG0058|consen 207 IRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSL 286 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 007337 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (607)
Q Consensus 217 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (607)
||.++++.++.+|+++++..+++++.++..++.+++.++.++...|.+.+|||||+|+.|+.+.+||.+..++.++...|
T Consensus 287 S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k 366 (716)
T KOG0058|consen 287 SWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKK 366 (716)
T ss_pred hHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007337 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (607)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (607)
.....+++.+..++...+..+.++++|++++..|++|.|.+.+|+.|...+..++..+..+++.++++..+.+|++++++
T Consensus 367 ~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~d 446 (716)
T KOG0058|consen 367 EAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMD 446 (716)
T ss_pred HHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------
Q 007337 377 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------ 438 (607)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------ 438 (607)
++|..+..+...|. ...|.|+|+||+|+||.+|+.++|+|+||+|+|||+||+||||||||
T Consensus 447 r~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 447 RKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred cCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 98876655444443 46789999999999999999999999999999999999999999999
Q ss_pred ------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCC
Q 007337 439 ------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500 (607)
Q Consensus 439 ------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~ 500 (607)
||+|.|||.||++||+|||.||.+ +.++|++++|++.|++|+||.++|+||||.|||+|..
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~q 604 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQ 604 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCcccc
Confidence 999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEec
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 580 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G 580 (607)
|||||||||||||||+|||.||||||||||||+++|..|+++|.+.++++|||+|||||+|+++||+|+|+|+|+++|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcC-CchHHHHHHhhcCCC
Q 007337 581 THEELLSKG-GVYTALVKRQLQEPK 604 (607)
Q Consensus 581 ~~~eL~~~~-g~y~~l~~~~~~~~~ 604 (607)
+|+||++++ |.|++|+++|....+
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~~~~ 709 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLDSGE 709 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhcccCC
Confidence 999999976 899999999976543
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.9e-102 Score=862.46 Aligned_cols=570 Identities=33% Similarity=0.506 Sum_probs=531.0
Q ss_pred CCcccccCCCCCccccCccc-----CCCCCccCCCCC---cCcccchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 007337 19 GERAPLLDHGGRRKRNDASE-----NGNVTDLEHGDA---VPAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIP 90 (607)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p 90 (607)
++++.+.||+.|.+..+..| +|....+.|.+. .+..+..+.+++..+..+++.+.-.++.+++..+++++.|
T Consensus 95 ~~~~~v~dp~~g~~~l~~~e~~~~~tg~~l~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p 174 (709)
T COG2274 95 KNKVVVLDPAKGIRRLSLEEFEKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATP 174 (709)
T ss_pred CCeEEEEeCCCCcEEcCHHHHHHhhheeEEEEecccccccccccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999998888876544 444444555432 2234557788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhc
Q 007337 91 KFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYD 170 (607)
Q Consensus 91 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~ 170 (607)
++++.++|.+..... .+.+..+.+++++..++..++..+|.++...++.++..++..++|+|++++|+.||+
T Consensus 175 ~~~q~viD~Vl~~~~--------~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~ 246 (709)
T COG2274 175 LFSQIVIDKVLPDAS--------RSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFE 246 (709)
T ss_pred HHHHHHHHhhhccCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHcc
Confidence 999999999876543 456667778888888999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 171 VTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQ 250 (607)
Q Consensus 171 ~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~ 250 (607)
++++||+++|+. |.+.|+++++......+.+++.+++.+++|++++|++++++++.+|+++++..++.+..++..++..
T Consensus 247 ~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~ 325 (709)
T COG2274 247 KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLI 325 (709)
T ss_pred CCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999995 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007337 251 AAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITG 330 (607)
Q Consensus 251 ~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 330 (607)
+..++.++.+.|+++|+++||+.+.|.++..+|++...+..+...+..+.......+..++..+..++++|+|++++++|
T Consensus 326 ~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~ 405 (709)
T COG2274 326 EESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEG 405 (709)
T ss_pred HHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCC
Q 007337 331 SMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRP 410 (607)
Q Consensus 331 ~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~ 410 (607)
++|+|.+++|.++...+..|+..+.+.+..++++..+.+|+.++++.|+|...+......+...++|+|+||+|+|+.+
T Consensus 406 ~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~- 484 (709)
T COG2274 406 ELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD- 484 (709)
T ss_pred CcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-
Confidence 9999999999999999999999999999999999999999999999988755443333445567899999999999876
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCcccccHH
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLFNCSIE 454 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf~gTIr 454 (607)
++++|+|+||+|+|||+|||||+||||| |+||+||+.||+||||
T Consensus 485 ~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence 4589999999999999999999999999 9999999999999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHH
Q 007337 455 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 534 (607)
Q Consensus 455 eNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~ 534 (607)
|||++++| +.++|++++||+.+++|+||++||+||+|+|||+|.||||||||||+||||+++||+||||||||||||++
T Consensus 565 eNi~l~~p-~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~ 643 (709)
T COG2274 565 ENIALGNP-EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPE 643 (709)
T ss_pred HHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHh
Confidence 99999998 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHh
Q 007337 535 SEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599 (607)
Q Consensus 535 te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~ 599 (607)
||++|.++|.+..++||+|+||||++++++||+|+|||+|||+|+|+|+||++.+|.|+++++.|
T Consensus 644 sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 644 TEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999876
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.3e-100 Score=853.38 Aligned_cols=541 Identities=38% Similarity=0.593 Sum_probs=502.5
Q ss_pred ccchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 54 ANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSV 133 (607)
Q Consensus 54 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (607)
.+..+.+++++.+|+|+.++++.+++++.++..++..++++.++..+...+++ . .......|+++++++.++..+
T Consensus 648 ~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~-~----~~~~~~~~al~f~~l~~~~~i 722 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDD-E----LKREVRAWALIFLGLGIVSGI 722 (1228)
T ss_pred ccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChH-H----HHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999987643221 0 111122377778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc-cCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 134 CTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV-TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF 212 (607)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 212 (607)
..+++.|++...++++..++|.++|+++++++..|||+ .++|.+.+|+.+|...++..+...+..++.++..+++++++
T Consensus 723 ~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iii 802 (1228)
T KOG0055|consen 723 TNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIII 802 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987 23499999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007337 213 MFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLK 292 (607)
Q Consensus 213 l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 292 (607)
.|+++|.++++++++.|++++......+.+.....+..+..++..+...|+++|||||++|+.|+++.+.|.+..++..+
T Consensus 803 af~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~ 882 (1228)
T KOG0055|consen 803 AFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRK 882 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 293 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVF 372 (607)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~ 372 (607)
...++..+.++..++.+.+.++..++.+|+|++++.+|.+++..++-.+.....-...+.+...+.+.+.++..++.+++
T Consensus 883 ~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF 962 (1228)
T KOG0055|consen 883 SSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIF 962 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988887777777788888899999999999999999
Q ss_pred HHhccCCCCCCCC-CCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------
Q 007337 373 QLLDRVSSMPKSG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------- 438 (607)
Q Consensus 373 ~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------- 438 (607)
+++++++..+.+. .....+...|+|+|+||+|+||.+|+.++|+|+||+|++||++|+||||||||
T Consensus 963 ~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp 1042 (1228)
T KOG0055|consen 963 EILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP 1042 (1228)
T ss_pred HHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 9999987544322 22222345689999999999999999999999999999999999999999999
Q ss_pred -----------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCcccccccc
Q 007337 439 -----------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVG 495 (607)
Q Consensus 439 -----------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ig 495 (607)
+++|+|+|.||++||||||+||.+ +++++|+.+|++.|++|+||.+||+||||.||
T Consensus 1043 ~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1043 DAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred CCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence 999999999999999999999965 58999999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 007337 496 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 575 (607)
Q Consensus 496 e~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~ 575 (607)
|+|.+||||||||||||||++|||+||||||||||||+++|+.|+++|++.+.+||+|+|||||+|+++||.|+|+++|+
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~ 1201 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGK 1201 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeEecChhHHhhcCCchHHHHHHhh
Q 007337 576 IVESGTHEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 576 Ive~G~~~eL~~~~g~y~~l~~~~~ 600 (607)
|+|+|||+||++++|.|++|++.|.
T Consensus 1202 VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1202 VVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred EEecccHHHHHhCCCchHHHhhhcc
Confidence 9999999999999999999998875
No 4
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-93 Score=799.27 Aligned_cols=535 Identities=22% Similarity=0.323 Sum_probs=468.7
Q ss_pred hHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (607)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (607)
.+++++++.+++++.++++++++++..++.++.|++++.++|.+.....+ ...+..++++++++.++..++.+
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-------REALLPPFILLILLFVLRALLAW 81 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999999999999999999999999999999999999976521110 11223344455566677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (607)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 216 (607)
++.++..+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++.+++.+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (588)
T PRK11174 82 LRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPI 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 007337 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (607)
Q Consensus 217 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (607)
+|++++++++++|+..++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK11174 162 NWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTME 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888889999999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGAL---------TSFILYSLTVGSSVSGLSSLYTVAMKAAGA 367 (607)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l---------~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 367 (607)
..+.......+..++..+..+++++++++.+ .|.+|+|.+ ++++.+...+..|+..+...+..++++..+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~ 320 (588)
T PRK11174 242 VLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGA 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777766666666666655555555555544 377777754 333356677889999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------
Q 007337 368 SRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------- 438 (607)
Q Consensus 368 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------- 438 (607)
.+|+.++++.+++..............+.|+|+||+|.|++ ++++|+|+||+|+|||++||||+|||||
T Consensus 321 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 321 AESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred HHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 99999999876543221111111112346999999987764 3579999999999999999999999999
Q ss_pred --------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccc
Q 007337 439 --------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQT 492 (607)
Q Consensus 439 --------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T 492 (607)
|+||||||+||+|||||||++|+| ++++|++++||+.|++++||++||+||||
T Consensus 399 ~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT 477 (588)
T PRK11174 399 FLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDT 477 (588)
T ss_pred CCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhccccccc
Confidence 999999999999999999999987 79999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 007337 493 FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 493 ~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~ 572 (607)
.|||+|.+|||||||||+||||+++||+||||||||||||++||+.|.++|+++.+++|+|+||||++++++||+|+||+
T Consensus 478 ~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~ 557 (588)
T PRK11174 478 PIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQ 557 (588)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CCEEeEecChhHHhhcCCchHHHHHHhhcC
Q 007337 573 DGEIVESGTHEELLSKGGVYTALVKRQLQE 602 (607)
Q Consensus 573 ~G~Ive~G~~~eL~~~~g~y~~l~~~~~~~ 602 (607)
+|+|+|+|+|+||++++|.|+++++.|.++
T Consensus 558 ~G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 558 DGQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred CCeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 999999999999999999999999888654
No 5
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.6e-92 Score=808.42 Aligned_cols=565 Identities=25% Similarity=0.368 Sum_probs=507.4
Q ss_pred CCcccccCCCCCccccCccc-----CCCCCccCCCCCcCc---ccchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 007337 19 GERAPLLDHGGRRKRNDASE-----NGNVTDLEHGDAVPA---ANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIP 90 (607)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p 90 (607)
++++.++||+.|++..+..| +|.+..++|.+..++ ....++.++.+++++++.++..++++++..++.++.|
T Consensus 95 ~~~~~i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p 174 (710)
T TIGR03796 95 GGRVYLNDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQKGGRKPSLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIP 174 (710)
T ss_pred CCEEEEECCCCCCEEccHHHHHhhCCCeEEEEEECccccccCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999988776433 666677766655432 2346778888899999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhc
Q 007337 91 KFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYD 170 (607)
Q Consensus 91 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~ 170 (607)
++++.++|.+..... ...+..+++.++++.++..++.+++.++..+++.++..++|.++|+|++++|+++|+
T Consensus 175 ~~~~~iid~v~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~ 246 (710)
T TIGR03796 175 AFSQIFVDEILVQGR--------QDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFA 246 (710)
T ss_pred HHHHHHHHHHhhcCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 999999998764322 122334455555666778888999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 171 VTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQ 250 (607)
Q Consensus 171 ~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~ 250 (607)
++++|++++|++.| +.+++++...+..++.+++.+++.++++++++|++++++++.+++++++..++.++.++..++..
T Consensus 247 ~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (710)
T TIGR03796 247 QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQ 325 (710)
T ss_pred CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007337 251 AAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITG 330 (607)
Q Consensus 251 ~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g 330 (607)
+..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+..+...+...+..++..+..++++++|++++.+|
T Consensus 326 ~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g 405 (710)
T TIGR03796 326 QDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEG 405 (710)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999988888888888888888888888889999999999999
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC------CCCCCCCCCCcEEEEeEEE
Q 007337 331 SMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSG------NQCPLGDQDGEVELDDVWF 404 (607)
Q Consensus 331 ~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~------~~~~~~~~~~~I~~~~vsf 404 (607)
.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++.+++..... ...+.+...+.|+++||+|
T Consensus 406 ~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf 485 (710)
T TIGR03796 406 QLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITF 485 (710)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEE
Confidence 9999999999999999999999999999999999999999999998766543221 0111022346799999999
Q ss_pred ECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCc
Q 007337 405 AYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVL 448 (607)
Q Consensus 405 ~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~L 448 (607)
+|++. ++++|+|+||+|+|||+|||||+||||| |+||||||++
T Consensus 486 ~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l 564 (710)
T TIGR03796 486 GYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFL 564 (710)
T ss_pred ecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChh
Confidence 99864 4579999999999999999999999999 8999999999
Q ss_pred ccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccC
Q 007337 449 FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 528 (607)
Q Consensus 449 f~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~T 528 (607)
|+|||||||++++| +++++++++|++.|+++++|.++|+||||.|||+|.+|||||||||+||||++++|+|+||||||
T Consensus 565 f~gTi~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEpt 643 (710)
T TIGR03796 565 FEGTVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEAT 643 (710)
T ss_pred hhccHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECcc
Confidence 99999999999986 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHH
Q 007337 529 SALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 596 (607)
Q Consensus 529 SaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 596 (607)
||||+++|+.|.++|++ .++|+|+||||+++++.||+|+|||+|+|+|.|+|+||++++|.|++|+
T Consensus 644 S~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 644 SALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred ccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 99999999999999987 5899999999999999999999999999999999999999999999987
No 6
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.9e-92 Score=802.81 Aligned_cols=564 Identities=25% Similarity=0.376 Sum_probs=502.0
Q ss_pred CCCcccccCCCCCcc-ccCccc----CCCCCccCCCCCcCcccchHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHH
Q 007337 18 GGERAPLLDHGGRRK-RNDASE----NGNVTDLEHGDAVPAANVGFGRVLAL-AKPDAGKLIIATVALLIASVSSILIPK 91 (607)
Q Consensus 18 ~~~~~~l~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~p~ 91 (607)
.++++.++||+.|++ ..+..| +|....+.|+ .+.....+++++++ ++++++.++..++++++..++.++.|+
T Consensus 80 ~~~~~~i~dP~~g~~~~~~~~e~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~ 157 (686)
T TIGR03797 80 SRGGYEIFDPATGTRRRVDAAMAATLAPEAYMFYRP--LPDKALGLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPI 157 (686)
T ss_pred cCCEEEEECCCCCCCcccCHHHHHhcCCEEEEEecC--CccccccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999987 454322 4433344443 22233456666666 688899999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc
Q 007337 92 FGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV 171 (607)
Q Consensus 92 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~ 171 (607)
+++.++|.+..... ...++.+++.++++.++..++.+++.++..+++.++..++|..+|+|++++|+.+|++
T Consensus 158 ~~~~iid~v~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~ 229 (686)
T TIGR03797 158 ATGILIGTAIPDAD--------RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQ 229 (686)
T ss_pred HHHHHHHHhhhcCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCC
Confidence 99999998864321 2234445566666777788899999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 172 TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQA 251 (607)
Q Consensus 172 ~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (607)
+++|++++|++ |++.+++++...+...+.+.+.++++++++++++|++++++++++++++++..++.++.++..++..+
T Consensus 230 ~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (686)
T TIGR03797 230 YSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLE 308 (686)
T ss_pred CChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 79999999998888888888888899999999999999999999999888888899999999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007337 252 AAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGS 331 (607)
Q Consensus 252 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 331 (607)
..++..+.+.|.++|+++||+++.|+.+.++|.+..++..+...+..+.......+..++..+..++++++|++++.+|.
T Consensus 309 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ 388 (686)
T TIGR03797 309 LSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAG 388 (686)
T ss_pred HHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999988888888888888888888899999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCC
Q 007337 332 MTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPN 411 (607)
Q Consensus 332 lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~ 411 (607)
+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.+++..... . +.....+.|+|+||+|+|++. +
T Consensus 389 ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~-~~~~~~~~I~~~nvsf~Y~~~-~ 465 (686)
T TIGR03797 389 LSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-T-DPGKLSGAIEVDRVTFRYRPD-G 465 (686)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-C-CCCCCCceEEEEEEEEEcCCC-C
Confidence 999999999999999999999999999999999999999999998765533211 1 111234679999999999754 4
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCcccccHHH
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLFNCSIEE 455 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf~gTIre 455 (607)
+++|+|+||+|+|||++||||+||||| |+||||||+||+|||||
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~e 545 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHH
Confidence 679999999999999999999999999 99999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHH
Q 007337 456 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAES 535 (607)
Q Consensus 456 NI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~t 535 (607)
||++++| ++++++++|++.|+++++|++||+||||+|||+|.+|||||||||+||||++++|+|||||||||+||+++
T Consensus 546 Ni~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~t 623 (686)
T TIGR03797 546 NIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623 (686)
T ss_pred HHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 9999975 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHh
Q 007337 536 EYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599 (607)
Q Consensus 536 e~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~ 599 (607)
|+.+.++|+++ ++|+|+||||+++++.||+|+||++|+|+|.|+|+||++++|.|+++++.|
T Consensus 624 e~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 624 QAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred HHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 99999999986 689999999999999999999999999999999999999999999999865
No 7
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.1e-92 Score=805.28 Aligned_cols=566 Identities=25% Similarity=0.383 Sum_probs=505.9
Q ss_pred CCcccccCC--CCCccccCccc-----CCCCCccCCCCCcCc---ccchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 007337 19 GERAPLLDH--GGRRKRNDASE-----NGNVTDLEHGDAVPA---ANVGFGRVLALAKPDAGKLIIATVALLIASVSSIL 88 (607)
Q Consensus 19 ~~~~~l~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (607)
++++.++|| +.|++..+..| +|....++|++++++ ....+++++.+++++++.++..++++++..++.++
T Consensus 95 ~~~~~i~dP~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (708)
T TIGR01193 95 KNHLIIADPDPTVGITKISKEDFYEEWTGIAIFISPTPEYKPIKEKENSLLKFIPLITRQKKLIVNIVIAAIIVTLISIA 174 (708)
T ss_pred CCEEEEEcCCcccCCEEecHHHHHhhCCCEEEEEEecccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999 88887766433 666667766655432 22567788889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 007337 89 IPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAF 168 (607)
Q Consensus 89 ~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~ 168 (607)
.|++++.++|.+..... ...+..+++.++++.++..++.+++.++..+++.++..++|.++|+|++++|+.+
T Consensus 175 ~p~~~~~iiD~v~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~ 246 (708)
T TIGR01193 175 GSYYLQKIIDTYIPHKM--------MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSF 246 (708)
T ss_pred HHHHHHHHHHHhhccCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999998764321 2223334445556667778889999999999999999999999999999999999
Q ss_pred hcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 169 YDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHK 248 (607)
Q Consensus 169 ~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 248 (607)
|+++++|++++|++ |++.+.+++.......+.+++.+++.++++++++|++++++++++|+++++..++.++.++..++
T Consensus 247 f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 325 (708)
T TIGR01193 247 FSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHD 325 (708)
T ss_pred hCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 89999999998888888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 249 TQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI 328 (607)
Q Consensus 249 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 328 (607)
..+..++..+.+.|+++|+++||++++|+.+.++|.+...+..+...+..+.......+..++..+..++++++|++++.
T Consensus 326 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~ 405 (708)
T TIGR01193 326 AMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVM 405 (708)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888887777777777777888889999999999
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCC
Q 007337 329 TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPS 408 (607)
Q Consensus 329 ~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~ 408 (607)
+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++.+......+.+...+.|+|+||+|+|++
T Consensus 406 ~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~ 485 (708)
T TIGR01193 406 RGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY 485 (708)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999877654322211112233467999999999974
Q ss_pred CCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCccccc
Q 007337 409 RPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLFNCS 452 (607)
Q Consensus 409 ~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf~gT 452 (607)
++++|+|+||+|+|||+|||||+||||| |+||||||+||+||
T Consensus 486 --~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gT 563 (708)
T TIGR01193 486 --GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGS 563 (708)
T ss_pred --CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHH
Confidence 3579999999999999999999999999 99999999999999
Q ss_pred HHHHhhcC-CCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 007337 453 IEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531 (607)
Q Consensus 453 IreNI~~g-~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL 531 (607)
|||||+++ ++ +++++++++|++.|+++++|++||+||||.|||+|.+|||||||||+||||++++|+|||||||||+|
T Consensus 564 I~eNi~l~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~L 642 (708)
T TIGR01193 564 ILENLLLGAKE-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL 642 (708)
T ss_pred HHHHHhccCCC-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99999999 45 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHH
Q 007337 532 DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 597 (607)
Q Consensus 532 D~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~ 597 (607)
|+++|+.+.+.|++. +++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|+++++
T Consensus 643 D~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 643 DTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred CHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 999999999999985 78999999999999999999999999999999999999999999999985
No 8
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.4e-91 Score=794.09 Aligned_cols=555 Identities=25% Similarity=0.356 Sum_probs=494.9
Q ss_pred ccccCCCCC--ccccCccc-----CCCCCccCCCCCcCc------ccchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 007337 22 APLLDHGGR--RKRNDASE-----NGNVTDLEHGDAVPA------ANVGFGRVLALAKPDAGKLIIATVALLIASVSSIL 88 (607)
Q Consensus 22 ~~l~~~~~~--~~~~~~~~-----~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (607)
+.++||+.| ++..+..| +|.+..++|.++.++ ....+++++++++++++.+...++++++..++.++
T Consensus 86 ~~i~DP~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 165 (694)
T TIGR03375 86 ARVLLPETGDGEQELSLDALEALYSGYAIFVRPQFRFDARADELISPRPKHWFWSTLKESWPLYRDVLIASLLINLLALA 165 (694)
T ss_pred EEEEccCCCCCceEecHHHHHhhcCCeEEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999998 76655322 565555555443221 22457778889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh
Q 007337 89 IPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAF 168 (607)
Q Consensus 89 ~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~ 168 (607)
.|++++.++|.+..... ...+..++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+.+
T Consensus 166 ~p~~~~~iiD~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~ 237 (694)
T TIGR03375 166 SPLFVMNVYDRVVPNQA--------FETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA 237 (694)
T ss_pred HHHHHHHHHHHhhhcCc--------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999998764321 1223334445555666778889999999999999999999999999999999998
Q ss_pred hcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 169 YDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHK 248 (607)
Q Consensus 169 ~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 248 (607)
+++++|++++|+ +|++.+++++...+...+.+++.+++.++++++++|++++++++++|+++++..++.++.++..++
T Consensus 238 -~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 315 (694)
T TIGR03375 238 -RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEE 315 (694)
T ss_pred -CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999 799999999998888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 249 TQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI 328 (607)
Q Consensus 249 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 328 (607)
..+..++..+.+.|+++|+++||.|++|+.+.++|.+..++..+...+..+.......+..++..+..++++++|++++.
T Consensus 316 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~ 395 (694)
T TIGR03375 316 SMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLIS 395 (694)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888888888888888888889999999999
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCC
Q 007337 329 TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPS 408 (607)
Q Consensus 329 ~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~ 408 (607)
+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++.+......+.+...+.|+|+||+|+|++
T Consensus 396 ~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~ 475 (694)
T TIGR03375 396 DGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG 475 (694)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999887653322111111223467999999999985
Q ss_pred CCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCccccc
Q 007337 409 RPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLFNCS 452 (607)
Q Consensus 409 ~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf~gT 452 (607)
. ++++|+|+||+|+|||++||||+||||| |+||||||++|+||
T Consensus 476 ~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~T 554 (694)
T TIGR03375 476 Q-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGT 554 (694)
T ss_pred C-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhh
Confidence 4 4579999999999999999999999999 99999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCC
Q 007337 453 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 532 (607)
Q Consensus 453 IreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD 532 (607)
|+|||++++| +++++++++|++.|+++++|++||+||||.+||+|.+|||||||||+||||++++|+|+||||||||||
T Consensus 555 I~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD 633 (694)
T TIGR03375 555 LRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633 (694)
T ss_pred HHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 9999999987 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 533 AESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 533 ~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|+.+.++|.+..+++|+|+||||+++++.||+|++|++|+|+|+|+|+||+++
T Consensus 634 ~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 634 NRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999899999999999999999999999999999999999999875
No 9
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=2.5e-90 Score=786.58 Aligned_cols=530 Identities=45% Similarity=0.682 Sum_probs=477.8
Q ss_pred cchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 55 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 134 (607)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (607)
...+++++++.+++++.+...+++.++..++.++.|++++.++|.+..... ...+...++.++++.++..++
T Consensus 146 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 217 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--------PPALASAIFFMCLLSIASSVS 217 (711)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999999999999999998864321 112222334445555667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 135 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (607)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 214 (607)
.+++.+++...+.++..++|.++|++++++|+.+|++.++|++++|+++|++.+.+.+...+..++.+++.+++.+++++
T Consensus 218 ~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~ 297 (711)
T TIGR00958 218 AGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFML 297 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 007337 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 294 (607)
Q Consensus 215 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 294 (607)
.++|++++++++.+|+..++..++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 298 ~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 377 (711)
T TIGR00958 298 WLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLN 377 (711)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 295 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 374 (607)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~ 374 (607)
.+..........+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~ 457 (711)
T TIGR00958 378 KRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEY 457 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777788888999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------
Q 007337 375 LDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------- 438 (607)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------- 438 (607)
++.+++.+......+ .+..+.|+|+||+|+||+++++++|+|+||+|+|||++||||||||||
T Consensus 458 l~~~~~~~~~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G 536 (711)
T TIGR00958 458 LDRKPNIPLTGTLAP-LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG 536 (711)
T ss_pred hCCCCCCCCCCCCCC-CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 988665432222112 123467999999999987545689999999999999999999999999
Q ss_pred --------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCC
Q 007337 439 --------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 498 (607)
Q Consensus 439 --------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G 498 (607)
|+||||||++|+|||||||++|.+ +.+|+++++|++.|+++++|++||+||||.+||+|
T Consensus 537 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 537 QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred EEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 899999999999999999999986 78999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeE
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 578 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive 578 (607)
.+|||||||||+||||+++||+|+||||||||||+++|+.+.+ . ...+++|+|+||||+++++.||+|+|||+|+|+|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive 693 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVE 693 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999 3 3447899999999999999999999999999999
Q ss_pred ecChhHHhhcCCchHHHH
Q 007337 579 SGTHEELLSKGGVYTALV 596 (607)
Q Consensus 579 ~G~~~eL~~~~g~y~~l~ 596 (607)
+|+|+||++++|.|++|+
T Consensus 694 ~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 694 MGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred eeCHHHHHhCCCchHhcC
Confidence 999999999999999863
No 10
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.7e-92 Score=789.55 Aligned_cols=541 Identities=41% Similarity=0.632 Sum_probs=494.5
Q ss_pred cchHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 55 NVGFGRVLALAKPD-AGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSV 133 (607)
Q Consensus 55 ~~~~~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (607)
...+..++++...+ +..+..+.+.+++..+..++..++++.++|.+...+. . ...+....+++.++.+.+...+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~----~-~~~~~~~~~~l~~~~lg~~~~~ 86 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTN----K-IASSEVSKVALYFVYLGVGVFI 86 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccc----h-hhHHHHHHHHHHHHHHHHHHHH
Confidence 34577777776554 4455578888888888888888899999998865432 1 1223455667777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 134 CTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM 213 (607)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l 213 (607)
+.+++..++.+.++|...++|..+++.++|+++.|||.+.+|++.+++++|++.+++.+.+.+..++..+.+++.++++.
T Consensus 87 ~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~ 166 (1228)
T KOG0055|consen 87 SGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIG 166 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 007337 214 FATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKL 293 (607)
Q Consensus 214 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 293 (607)
|++.|+++++++.+.|++.+....+.+.+.+...+.+++.++..+...|++.++|||.+|+.|+...++|.+..+...+.
T Consensus 167 F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~ 246 (1228)
T KOG0055|consen 167 FYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKF 246 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 294 GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQ 373 (607)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~ 373 (607)
..+...+.++..++..++.+...+..+|||..++..+..+.|.+++.+.....-...+.+....+..+.++.+++.+|++
T Consensus 247 gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~ 326 (1228)
T KOG0055|consen 247 GIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFE 326 (1228)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHH
Confidence 99999999999999999999999999999999999999999998887776666677778888888999999999999999
Q ss_pred HhccCCCCCCCC-CCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------
Q 007337 374 LLDRVSSMPKSG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------- 438 (607)
Q Consensus 374 ~l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------- 438 (607)
.++..+...... .........+.|+|+||+|+||.+++.++|+|+||+|++||+|||||+|||||
T Consensus 327 ~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~ 406 (1228)
T KOG0055|consen 327 TIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT 406 (1228)
T ss_pred HhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 999876543221 22233345689999999999999988899999999999999999999999999
Q ss_pred ----------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccC
Q 007337 439 ----------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 496 (607)
Q Consensus 439 ----------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige 496 (607)
|++|+|+|.||++||+|||+||+| +++++++++|+|++++++||.+||+||||.+||
T Consensus 407 ~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~-dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge 485 (1228)
T KOG0055|consen 407 SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKP-DATREEIEEAAKAANAHDFILKLPDGYDTLVGE 485 (1228)
T ss_pred CceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCC-cccHHHHHHHHHHccHHHHHHhhHHhhcccccC
Confidence 999999999999999999999998 899999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 007337 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 576 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~I 576 (607)
+|..|||||||||||||||++||+||||||||||||+++|+.|+++|.+..++||+|+|||||+|+++||+|+||++|+|
T Consensus 486 ~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~I 565 (1228)
T KOG0055|consen 486 RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKI 565 (1228)
T ss_pred CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecChhHHhhcCCchHHHHHHhhc
Q 007337 577 VESGTHEELLSKGGVYTALVKRQLQ 601 (607)
Q Consensus 577 ve~G~~~eL~~~~g~y~~l~~~~~~ 601 (607)
||.|+|+||++.+|.|.+|++.|..
T Consensus 566 vE~G~h~ELi~~~G~Y~~lv~~Q~~ 590 (1228)
T KOG0055|consen 566 VEQGTHDELIALGGIYSSLVRLQEL 590 (1228)
T ss_pred EEecCHHHHHhccchHHHHHHHHhh
Confidence 9999999999999999999998753
No 11
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.3e-89 Score=763.25 Aligned_cols=527 Identities=40% Similarity=0.681 Sum_probs=476.8
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (607)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (607)
+++++.+.+ ++ .+..+.++.++..++....|++++.++|.+... ......+...++++.++..++.+.
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~ 71 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----------LGELLELLLLLLLLALLGGVLRAL 71 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777 77 888899999999999999999999999987611 222333444455555566777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (607)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 217 (607)
..++....+.++..++|.++|++++++|+.+|+++++|++++|+++|++.+.+.+......+...++.++..+++++..+
T Consensus 72 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (567)
T COG1132 72 QSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLS 151 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888899999999999999999999999999999999999999999999988875555557888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 007337 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (607)
Q Consensus 218 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (607)
|.++++.++..|++.+...++.++.++..++.++..++..+.+.|.++|++++|+|+.++...+++.+..++..+...+.
T Consensus 152 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~ 231 (567)
T COG1132 152 WRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888889999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
.+.......+..++..+..++++++|.+.+..+.+++|.+++++.+...+..|+..+...+..+.++..+.+|+.++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~ 311 (567)
T COG1132 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDE 311 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------
Q 007337 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------- 438 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------- 438 (607)
+++..+.... .....++|+|+||+|+|++ ++++|+|+||+|+|||++||||||||||
T Consensus 312 ~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~ 387 (567)
T COG1132 312 EPEVEDPPDP--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387 (567)
T ss_pred CccccCCCCC--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence 6653332221 1234467999999999985 3579999999999999999999999999
Q ss_pred -----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 -----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 -----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
|+||||||+||+|||+|||++|+| ++++||+++||+.|+++|+|+++|+||||.|||+|.+|
T Consensus 388 idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L 466 (567)
T COG1132 388 IDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466 (567)
T ss_pred ECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence 999999999999999999999997 79999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecC
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 581 (607)
||||||||+||||+++|||||||||||||||++||+.|++++.++.++||+|+||||++++++||+|+|||+|+|+|.|+
T Consensus 467 SgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGT 546 (567)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hhHHhhcCCchHHHHHHhhc
Q 007337 582 HEELLSKGGVYTALVKRQLQ 601 (607)
Q Consensus 582 ~~eL~~~~g~y~~l~~~~~~ 601 (607)
|+||++++|.|++||+.|..
T Consensus 547 h~eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 547 HEELLAKGGLYARLYQAQGG 566 (567)
T ss_pred HHHHHHcCCHHHHHHHHhhc
Confidence 99999999999999998754
No 12
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.1e-89 Score=775.89 Aligned_cols=570 Identities=30% Similarity=0.452 Sum_probs=508.1
Q ss_pred CCcccccCCCCC-ccccCcc-----cCCCCCccCCCCCc-CcccchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 007337 19 GERAPLLDHGGR-RKRNDAS-----ENGNVTDLEHGDAV-PAANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPK 91 (607)
Q Consensus 19 ~~~~~l~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~ 91 (607)
++++.++||+.| ++..+.. .++.+..++|++.. +.....+++++++++++++.+...++++++..++.++.|+
T Consensus 81 ~~~~~i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~ 160 (694)
T TIGR01846 81 ANGVTIYDPPGDAPEVLSREVLEALWSGTVILLATRSVAGKALKFGFSWFIPAIIRYRKQFREVLLISLALQLFALVTPL 160 (694)
T ss_pred CCEEEEEcCCCCCceeeCHHHHHhhCCCeEEEEecCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999988 5555432 25666666554411 1123567888888999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc
Q 007337 92 FGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV 171 (607)
Q Consensus 92 ~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~ 171 (607)
+++.++|.+..... ...+..+++.++++.++..++.+++.++..+++.++..++|.++|+|++++|+.+|++
T Consensus 161 ~~~~iid~v~~~~~--------~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~ 232 (694)
T TIGR01846 161 LFQVVIDKVLVHRG--------LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES 232 (694)
T ss_pred HHHHHHHHhhccCC--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCC
Confidence 99999998764321 2233344555566667788899999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 172 TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQA 251 (607)
Q Consensus 172 ~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (607)
+++|++++|+ +|++.+++++...+..++.+++.+++.++++++++|++++++++++|++.++..++.++.++..++..+
T Consensus 233 ~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~ 311 (694)
T TIGR01846 233 RRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFE 311 (694)
T ss_pred CCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 699999999988888888888888888999999999999999999999998888899988999999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007337 252 AAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGS 331 (607)
Q Consensus 252 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 331 (607)
..++..+.+.|+++|+++||+++.|+.+.++|.+..++..+...+..+.......+..++..+..++++++|++++.+|.
T Consensus 312 ~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ 391 (694)
T TIGR01846 312 RSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGA 391 (694)
T ss_pred HHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999988888888888888888888899999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCC
Q 007337 332 MTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPN 411 (607)
Q Consensus 332 lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~ 411 (607)
+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..... ..+.+...+.|+++||+|+|++. +
T Consensus 392 it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~~~~~~~~~~i~~~~vsf~y~~~-~ 469 (694)
T TIGR01846 392 LSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAG-LAALPELRGAITFENIRFRYAPD-S 469 (694)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC-CCCCCCCCCeEEEEEEEEEcCCC-C
Confidence 999999999999999999999999999999999999999999998776543211 11112234679999999999754 4
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCcccccHHH
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLFNCSIEE 455 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf~gTIre 455 (607)
+++|+|+||+|+|||++||||+||||| ++||||||++|++||+|
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~e 549 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD 549 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHH
Confidence 579999999999999999999999999 89999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHH
Q 007337 456 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAES 535 (607)
Q Consensus 456 NI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~t 535 (607)
||++++| +.+++++++|++.+++++++++||+||||.+||+|.+|||||||||+||||++++|+|+|||||||+||+++
T Consensus 550 Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 550 NIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred HHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 9999987 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHhh
Q 007337 536 EYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 536 e~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~~ 600 (607)
|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||++++|.|+++++.|.
T Consensus 629 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 629 EALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQS 693 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHHhhc
Confidence 99999999998889999999999999999999999999999999999999999999999998763
No 13
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7e-88 Score=754.91 Aligned_cols=532 Identities=33% Similarity=0.516 Sum_probs=479.3
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (607)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (607)
++.++++++++++.++..+++.++..++..+.|++++.++|.+..... ...+..+++.++++.++..++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~ 84 (582)
T PRK11176 13 FRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--------RSVLKWMPLVVIGLMILRGITSFI 84 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888888999999999997764321 111222233344456667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (607)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 217 (607)
+.++..+++.++...+|..+|+++++.|..+|++.++|++++|+++|++.+.+.+...+..++.+++.+++.++++++++
T Consensus 85 ~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (582)
T PRK11176 85 SSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 007337 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (607)
Q Consensus 218 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (607)
|++++++++++|+..++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+.
T Consensus 165 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (582)
T PRK11176 165 WQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKM 244 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888899999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
.+.......+..+++.+..++++++|++.+.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~ 324 (582)
T PRK11176 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDL 324 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888888888888888889999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------
Q 007337 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------- 438 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------- 438 (607)
+++.+.... +.++..+.|+++||+|+|+++ ++++|+|+||+|++||++||||+|||||
T Consensus 325 ~~~~~~~~~--~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~ 401 (582)
T PRK11176 325 EQEKDEGKR--VIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401 (582)
T ss_pred CCcCCCCCc--CCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence 654322111 112233579999999999864 4679999999999999999999999999
Q ss_pred -----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 -----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 -----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
|+||||||++|+|||||||++|+++++++++++++++.+++++++++||+|+||.+||+|.+|
T Consensus 402 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred ECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 899999999999999999999976358999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecC
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 581 (607)
||||||||+||||++++|+|+||||||||||++||+.+.+.|.++.+++|+|+||||+++++.||+|++|++|+|+|.|+
T Consensus 482 SGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~ 561 (582)
T PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGT 561 (582)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCCchHHHHHHhh
Q 007337 582 HEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 582 ~~eL~~~~g~y~~l~~~~~ 600 (607)
|+||+++++.|++|++.|.
T Consensus 562 ~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 562 HAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred HHHHHhCCChHHHHHHHHh
Confidence 9999999999999998764
No 14
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-89 Score=781.92 Aligned_cols=551 Identities=22% Similarity=0.301 Sum_probs=482.9
Q ss_pred ccCCCCCccCCCCCcCcccchH---------------HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007337 37 SENGNVTDLEHGDAVPAANVGF---------------GRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVS 101 (607)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~ 101 (607)
.+..+++++++.++.+.....+ +.++.+++.+++.+++..++.++...+.+++|.++..+|+++.
T Consensus 153 L~~~Dl~~l~~~d~s~~l~~~~~~~w~~~~~~~~~~psl~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~ 232 (1381)
T KOG0054|consen 153 LELKDLWSLSPEDSSETLVKRLESLWEKELGRSGKKPSLLRALLRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFS 232 (1381)
T ss_pred CChhhcccCChhhhhhHHHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 5556777777766654321111 1244556678888988888888888889999999999999987
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHH
Q 007337 102 GDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRL 181 (607)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~ 181 (607)
.... + ....+.+++++++..++..++.....+...+++.+++..+...+|+|.++++.......+.|+++|.+
T Consensus 233 ~~~~-~------~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlm 305 (1381)
T KOG0054|consen 233 EKRL-P------LNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLM 305 (1381)
T ss_pred CCCc-c------cchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhh
Confidence 6421 1 22234567777888888888888888888899999999999999999999999988888999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 182 SEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAE 261 (607)
Q Consensus 182 ~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (607)
++|++++.++.. .++.+|..++++++++++++..-++.++++++++.++++++.++.+++++++.+.++.+++|.+.++
T Consensus 306 s~D~~ri~~~~~-~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~n 384 (1381)
T KOG0054|consen 306 SVDAQRLSDAAC-FLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMN 384 (1381)
T ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999998865 6899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHH
Q 007337 262 ESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANL-TITGSMTPGALTSF 340 (607)
Q Consensus 262 e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~g~lt~g~l~~~ 340 (607)
|.++||++||+|+||+.|.++.++.++++.+...+.....++...+..+...++ ..+.++.+. ...+.+|+...++.
T Consensus 385 EiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv--~~~tF~~~v~~~~~~lt~~~aF~s 462 (1381)
T KOG0054|consen 385 EILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLV--SVVTFVVFVLLLGNLLTASTAFTS 462 (1381)
T ss_pred HHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhccCccccHhHHHHH
Confidence 999999999999999999999999999999998888888777766555444443 344445555 55778999899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceE
Q 007337 341 ILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITL 420 (607)
Q Consensus 341 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl 420 (607)
++++..+..|+..++..++.+.++.++.+|+.+++..++..++.....+..+.+..|+++|.+|+|++..+.+.|+||||
T Consensus 463 lalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~ 542 (1381)
T KOG0054|consen 463 LALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINF 542 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeE
Confidence 99999999999999999999999999999999999887655443322233334457999999999997545569999999
Q ss_pred EeeCCCEEEEEcCCCCcc-----------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHc
Q 007337 421 KLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMA 477 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a 477 (607)
+|++|+.+||||++|||| +|||||+||||||||||||+||. ++++++|++++++|
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~ngTvreNILFG~--~~d~~rY~~Vi~aC 620 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQNGTVRENILFGS--PYDEERYDKVIKAC 620 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhCCcHHHhhhcCc--cccHHHHHHHHHHc
Confidence 999999999999999999 99999999999999999999995 59999999999999
Q ss_pred CchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHH-HHHHHHHHHHHhcCCCeEEEEc
Q 007337 478 NAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE-SEYLVQDAMDSLMKGRTVLVIA 556 (607)
Q Consensus 478 ~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~-te~~i~~~l~~~~~~~TvI~It 556 (607)
+|++|++.||.|+.|+|||+|.||||||||||+||||+|+|+|||+||||.||||+| +.+.+.+||+..+++||+|+||
T Consensus 621 ~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVT 700 (1381)
T KOG0054|consen 621 ALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVT 700 (1381)
T ss_pred cCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999 7788889999999999999999
Q ss_pred cCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHh
Q 007337 557 HRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599 (607)
Q Consensus 557 Hrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~ 599 (607)
|+++++++||+|++|++|+|++.|+|+||++.++.|.++.++.
T Consensus 701 Hql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~ 743 (1381)
T KOG0054|consen 701 HQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEE 743 (1381)
T ss_pred CchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhcc
Confidence 9999999999999999999999999999999999999986543
No 15
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.9e-87 Score=745.19 Aligned_cols=532 Identities=23% Similarity=0.319 Sum_probs=468.1
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (607)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (607)
+++++++.+++++.++++++++++..++.+..|++++++||........... ..... ..++.++++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLY---SFNYM-LPAAGVRGAAIGRTAGRYG 79 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh---hHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999999975421110000 01111 1122344455667788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (607)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 217 (607)
..++..+.+.++..++|.++|+|++++|..+|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++
T Consensus 80 ~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (574)
T PRK11160 80 ERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFD 159 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 007337 218 WKLTLLALVVVPAISV-AVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (607)
Q Consensus 218 ~~l~li~l~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (607)
|++++++++++|++.+ +..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 160 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (574)
T PRK11160 160 LTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRR 239 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888877655 446677888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLT-VGSSVSGLSSLYTVAMKAAGASRRVFQLL 375 (607)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~~~ri~~~l 375 (607)
..+..+....+..++..+..++++++|+++ .+|.+++|.+++++.+... ...|+..+...+..++++..+++|+.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll 318 (574)
T PRK11160 240 QANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEIT 318 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888888888888888999988 4889999999998877543 45788889999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------
Q 007337 376 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------- 438 (607)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------- 438 (607)
+.+++........+ .+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||||||||
T Consensus 319 ~~~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 319 EQKPEVTFPTTSTA-AADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred hCCCCCCCCcccCC-CCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 87665322111111 1234579999999999854 3479999999999999999999999999
Q ss_pred -------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCC
Q 007337 439 -------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 499 (607)
Q Consensus 439 -------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~ 499 (607)
|+||||||+||++||+|||++++| +.++++++++++.+++++++++ |+||||.|||+|.
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~ 474 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAP-NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGR 474 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCC
Confidence 899999999999999999999987 7899999999999999999999 9999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEe
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~ 579 (607)
+|||||||||+||||++++|+|+|||||||+||+++|+.+.++|.+..+++|+|+||||+++++.||+|++|++|+|+|.
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~ 554 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQ 554 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCCchHHHHHH
Q 007337 580 GTHEELLSKGGVYTALVKR 598 (607)
Q Consensus 580 G~~~eL~~~~g~y~~l~~~ 598 (607)
|+|+||++++|.|+++++.
T Consensus 555 g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 555 GTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred CCHHHHHhcCcHHHHHHhh
Confidence 9999999999999999863
No 16
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.4e-87 Score=803.77 Aligned_cols=532 Identities=29% Similarity=0.396 Sum_probs=458.1
Q ss_pred hHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (607)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (607)
.+.+++++++++++.++++++++++.+++.++.|++++.++|.+.... . .......+++.++++.++..++.+
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~---~~~~~~~~~l~~~~~~i~~~~~~~ 884 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA----N---LEANSNKYSLYILVIAIAMFISET 884 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888999999999999999999999999999764321 0 011123455556666777788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc--cCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV--TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (607)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 214 (607)
++.|+..++++++..++|.++|++++++|+.||++ +++|++++|+++|++.+++.+...+..++..++.+++++++++
T Consensus 885 l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~ 964 (1466)
T PTZ00265 885 LKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSF 964 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999986 7899999999999999999999888888999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhccH
Q 007337 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELS-HK-----------------TQAAAATAASIAEESFGAIRTVRSFAQE 276 (607)
Q Consensus 215 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e 276 (607)
+++|.++++++++++++ ...+.++.+... ++ ..+..++....+.|+++|+++||+|+.|
T Consensus 965 ~~~~~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e 1041 (1466)
T PTZ00265 965 YFCPIVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLE 1041 (1466)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcch
Confidence 99999888766444333 333333222211 11 1233566788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 277 KNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSS 356 (607)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~ 356 (607)
+.+.++|.+..++..+...+.....++..++..++..+..++++|+|++++.+|.+|+|.+++++.++.....++..+..
T Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~ 1121 (1466)
T PTZ00265 1042 DYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMS 1121 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888888899999999999999999999999988776655667888999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCC-CCCCC---CCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEc
Q 007337 357 LYTVAMKAAGASRRVFQLLDRVSSMPKS-GNQCP---LGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVG 432 (607)
Q Consensus 357 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~---~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG 432 (607)
.+..++++..+++|+.++++.+++.+.. ....+ .+...+.|+|+||+|+||++++.++|+|+||+|+||++|||||
T Consensus 1122 ~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG 1201 (1466)
T PTZ00265 1122 LKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVG 1201 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEEC
Confidence 9999999999999999999876533211 11111 1223467999999999987655689999999999999999999
Q ss_pred CCCCcc--------------------------------------------------------------------------
Q 007337 433 PSGGGK-------------------------------------------------------------------------- 438 (607)
Q Consensus 433 ~sGsGK-------------------------------------------------------------------------- 438 (607)
+|||||
T Consensus 1202 ~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~i 1281 (1466)
T PTZ00265 1202 ETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILL 1281 (1466)
T ss_pred CCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEE
Confidence 999999
Q ss_pred ----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCC
Q 007337 439 ----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 439 ----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
|+||||||+||+|||||||+||+| +++++++++||+.|++++||++||+||||.|||+|.+||
T Consensus 1282 dG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LS 1360 (1466)
T PTZ00265 1282 DGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLS 1360 (1466)
T ss_pred CCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCC
Confidence 779999999999999999999987 799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeC----CEE
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSD----GEI 576 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~----G~I 576 (607)
|||||||||||||+++|+||||||||||||+++|+.|+++|.++. +++|+|+||||++++++||+|+||++ |++
T Consensus 1361 GGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~i 1440 (1466)
T PTZ00265 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSF 1440 (1466)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCE
Confidence 999999999999999999999999999999999999999999984 68999999999999999999999999 995
Q ss_pred e-EecChhHHhh-cCCchHHHHHHh
Q 007337 577 V-ESGTHEELLS-KGGVYTALVKRQ 599 (607)
Q Consensus 577 v-e~G~~~eL~~-~~g~y~~l~~~~ 599 (607)
+ |+|+|+||++ ++|.|++|++.|
T Consensus 1441 v~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1441 VQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EEEecCHHHHHhcCCChHHHHHhhc
Confidence 5 8999999998 599999999865
No 17
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-87 Score=698.35 Aligned_cols=517 Identities=28% Similarity=0.401 Sum_probs=476.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 73 IIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAR 152 (607)
Q Consensus 73 ~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (607)
....++.+++.+..+.+.+++...++.+..... ...+..+++.++++.++.+++.+.+.....+.+.++...
T Consensus 3 ~i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--------~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~ 74 (559)
T COG4988 3 VISALLAVLSGIAIIAQAALLADILTKLIEGQL--------FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRAS 74 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888888887765431 234456677788888899999999999999999999999
Q ss_pred HHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007337 153 LRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAIS 232 (607)
Q Consensus 153 lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~ 232 (607)
+|..+++|+.++++.+-+..++|++.+.+...++.++.++..+++.+....+..++.++.+++++|..+++.++++|++.
T Consensus 75 LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIP 154 (559)
T COG4988 75 LRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIP 154 (559)
T ss_pred HHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 233 VAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAAS 312 (607)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (607)
+++..+++..++..+++.+.....++++.|.++|+.|+|.|+..+...+++.+..+++++..++..+.......+..+++
T Consensus 155 lfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa 234 (559)
T COG4988 155 LFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFA 234 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC-CCC
Q 007337 313 TLSVIVVVIYGANLTIT-GSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQ-CPL 390 (607)
Q Consensus 313 ~~~~~~~~~~g~~~~~~-g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~-~~~ 390 (607)
+++.+++..+.+..... |++|....+.++.+.--++.|++.+++.++.-+.+..+.+.+..+++.+.+..+.... ...
T Consensus 235 ~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~ 314 (559)
T COG4988 235 YLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVA 314 (559)
T ss_pred HHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccc
Confidence 99999888887777777 8999999999999999999999999999999999999999999999988765433321 111
Q ss_pred CCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------
Q 007337 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------- 438 (607)
Q Consensus 391 ~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------- 438 (607)
......|+++|++|.|+++ +++++|+||++++|+++||||+|||||
T Consensus 315 ~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~ 392 (559)
T COG4988 315 NEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEA 392 (559)
T ss_pred cCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHH
Confidence 1222345566999999975 389999999999999999999999999
Q ss_pred ----eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 439 ----ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 439 ----i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
++||+|+|+||+|||||||+++++ +.+|+++++|++.+++.+++.. |+|+||+|||+|.+|||||+||++||||
T Consensus 393 ~~k~i~~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARA 470 (559)
T COG4988 393 WRKQISWVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARA 470 (559)
T ss_pred HHhHeeeeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999997 7999999999999999999999 9999999999999999999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHH
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTA 594 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~ 594 (607)
++++++++|||||||+||.+||++|.++|.++.++||+|+||||++.+++||+|+|||+|+++|+|+|+||.+++|.|++
T Consensus 471 ll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~ 550 (559)
T COG4988 471 LLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYAN 550 (559)
T ss_pred hcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 007337 595 LVKRQLQ 601 (607)
Q Consensus 595 l~~~~~~ 601 (607)
|+..|..
T Consensus 551 l~~~q~~ 557 (559)
T COG4988 551 LLKQQEG 557 (559)
T ss_pred HHHHHhc
Confidence 9998764
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5.9e-86 Score=738.40 Aligned_cols=532 Identities=34% Similarity=0.548 Sum_probs=485.7
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (607)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (607)
++.++.+.+++++.+++++++.++..++.+..|++++.++|....... ...+..+++.++++.++..++.+.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~ 73 (571)
T TIGR02203 2 FRRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--------RSVLWWVPLVVIGLAVLRGICSFV 73 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999999999999999999999999997654321 122333444556666777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (607)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 217 (607)
+.++..+.+.++...+|..+|+++++.|.+++++.++|++++|+++|++.+++++...+..++.+++.++++++++++++
T Consensus 74 ~~~~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 153 (571)
T TIGR02203 74 STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYS 153 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 007337 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (607)
Q Consensus 218 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (607)
|++++++++++|+.+++..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++|.+..++..+...+.
T Consensus 154 ~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (571)
T TIGR02203 154 WQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKM 233 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
.+.......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+++++.+.+|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 313 (571)
T TIGR02203 234 TSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDS 313 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------
Q 007337 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------- 438 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------- 438 (607)
+++.+.... +..+..++|+++||+|+|++. +.++|+|+||+|++||+|+|+|+|||||
T Consensus 314 ~~~~~~~~~--~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~ 390 (571)
T TIGR02203 314 PPEKDTGTR--AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390 (571)
T ss_pred CCCCCCCCC--CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence 655332211 111234579999999999864 4579999999999999999999999999
Q ss_pred -----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 -----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 -----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
++||||+|++|+|||||||+++++++.++++++++++.|++++++.+||+|+||+|||+|.+|
T Consensus 391 i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~L 470 (571)
T TIGR02203 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470 (571)
T ss_pred ECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcC
Confidence 899999999999999999999974368999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecC
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 581 (607)
||||||||+||||++++|||+|||||||+||+++|+.+.+.|.+..++||+|+||||++.++.||+|++|++|++++.|+
T Consensus 471 SgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGT 550 (571)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCCchHHHHHHhh
Q 007337 582 HEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 582 ~~eL~~~~g~y~~l~~~~~ 600 (607)
|+|++++++.|+++++.+.
T Consensus 551 ~~~l~~~~~~~~~~~~~~~ 569 (571)
T TIGR02203 551 HNELLARNGLYAQLHNMQF 569 (571)
T ss_pred HHHHHHcCCHHHHHHHHhh
Confidence 9999999999999887663
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=7e-86 Score=739.34 Aligned_cols=532 Identities=28% Similarity=0.421 Sum_probs=460.9
Q ss_pred hHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (607)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (607)
.+++++.+.+++++.+++.+++.++..++.++.|++++.++|.+......+ ......++++++++.++..++.+
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 83 (592)
T PRK10790 10 TLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP------LGLVAGLAAAYVGLQLLAAGLHY 83 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888888899999999999999999999999875422110 11112233344555566777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (607)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 216 (607)
.+.++..+++.++..++|.++|+++++.|+++|++.++|++++|+++|++.+++.+...+..++.++..+++.+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (592)
T PRK10790 84 AQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSL 163 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888999998899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 007337 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (607)
Q Consensus 217 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (607)
+|++++++++++|+.+++..++.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.++|.+..++..+...+
T Consensus 164 ~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (592)
T PRK10790 164 DWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQ 243 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888877777788888888888888899999999999999999999999999999999988888777766
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 297 QAKVVGLF-FGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 375 (607)
Q Consensus 297 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l 375 (607)
..+..... ..+..++..+..+++++++++ +..|.+++|.++++..+...+..|+..+...+..++++..+.+|+.+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l 322 (592)
T PRK10790 244 TLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELM 322 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555443 233333443333333333444 5789999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------
Q 007337 376 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------- 438 (607)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------- 438 (607)
+.+++...... .+...+.|+|+||+|+|++ ++++|+|+||+|++||++||||+|||||
T Consensus 323 ~~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 323 DGPRQQYGNDD---RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred cCCCccCCCCc---cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 86544221111 1122357999999999984 3479999999999999999999999999
Q ss_pred -------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCC
Q 007337 439 -------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 499 (607)
Q Consensus 439 -------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~ 499 (607)
|+||||||++|+|||||||++++ ++++++++++++.++++++|+.||+||||.+||+|.
T Consensus 398 I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~ 475 (592)
T PRK10790 398 IRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGN 475 (592)
T ss_pred EEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCC
Confidence 99999999999999999999995 589999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEe
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~ 579 (607)
+|||||||||+||||++++|||+||||||||||++||+.|.+.|+++.++||+|+||||+++++.||+|++|++|+|+|.
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~ 555 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQ 555 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCCchHHHHHHhhcC
Q 007337 580 GTHEELLSKGGVYTALVKRQLQE 602 (607)
Q Consensus 580 G~~~eL~~~~g~y~~l~~~~~~~ 602 (607)
|+|+||+++++.|+++++.|..+
T Consensus 556 G~~~~L~~~~~~y~~l~~~~~~~ 578 (592)
T PRK10790 556 GTHQQLLAAQGRYWQMYQLQLAG 578 (592)
T ss_pred cCHHHHHhCCCHHHHHHHHHhhh
Confidence 99999999999999999977554
No 20
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-89 Score=686.88 Aligned_cols=517 Identities=29% Similarity=0.430 Sum_probs=444.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 007337 72 LIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVI------VGSVCTALRAWLFSSA 145 (607)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 145 (607)
.+.+.++.++.-++....|.+.++++|.+.. +... .+ ......+++.. ...++..+|.++...+
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~lta-p~~~-----~~----~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~V 286 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTA-PDTF-----QY----SLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPV 286 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcC-cchh-----hH----HHHHHHHHHHHHhcCCccccchhhhheeEEEEh
Confidence 4455556666677788999999999998862 2110 01 11112222222 2356677888988899
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHH
Q 007337 146 SERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF-MFATSWKLTLLA 224 (607)
Q Consensus 146 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~-l~~~~~~l~li~ 224 (607)
++-..+++-.++|+|+.++++.|+-.+.+|+++.-+...++.+. ++...+.++...++-..++++. ...++|+.++++
T Consensus 287 qQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIV 365 (790)
T KOG0056|consen 287 QQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIV 365 (790)
T ss_pred hHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHH
Confidence 99999999999999999999999999999999988887766654 3333333333333333333322 334699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 225 LVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLF 304 (607)
Q Consensus 225 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (607)
++++.++..+...+.....++++++.....+......|++-|.+|+|-|+.|+.+.++|++...++.+...+......+.
T Consensus 366 fl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfL 445 (790)
T KOG0056|consen 366 FLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFL 445 (790)
T ss_pred HHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988777766666677777777777777788889999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 007337 305 FGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKS 384 (607)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 384 (607)
+...+.+..+.+++...+.+|.+..+.+|+|+++.+..|..++.+|++.++..+..++++.+.+++++++++++++..+.
T Consensus 446 N~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~ 525 (790)
T KOG0056|consen 446 NIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDL 525 (790)
T ss_pred HHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcC
Confidence 88888888888888778888999999999999999999999999999999999999999999999999999998887665
Q ss_pred CCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------
Q 007337 385 GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------- 438 (607)
Q Consensus 385 ~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------- 438 (607)
+...|.....|.|+|+||+|+|++ ++|+|+||||+++||+++|+|||||+||
T Consensus 526 P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 526 PGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 555565566789999999999986 4689999999999999999999999999
Q ss_pred ----------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ----------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ----------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
||+||||..|||+||.+||.|++| .+++||+.+|+++|++||-|.++|+||+|+|||||-+||||||||
T Consensus 604 nvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQR 682 (790)
T KOG0056|consen 604 NVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQR 682 (790)
T ss_pred HHHHHHHHHhcCcccCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhh
Confidence 999999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+||||+++++|.|++|||||||||.+||+.|+.+|.++..++|.|+|+|||+|+-+||.|+|+++|+|+|.|+|+||+++
T Consensus 683 VAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 683 VAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred HHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCchHHHHHHhhcC
Q 007337 589 -GGVYTALVKRQLQE 602 (607)
Q Consensus 589 -~g~y~~l~~~~~~~ 602 (607)
+|.|++||+.|...
T Consensus 763 dgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 763 DGGAYADMWQAQQAM 777 (790)
T ss_pred cCCcHHHHHHHHHhc
Confidence 99999999866543
No 21
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1.2e-84 Score=728.43 Aligned_cols=532 Identities=30% Similarity=0.444 Sum_probs=468.7
Q ss_pred hHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (607)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (607)
.+++++++++++++.+++.++++++..++.++.|++++.++|.+..... . ..+++.++++.++..+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~--------~---~~~~~~~~~~~~~~~~~~~ 74 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD--------I---FPLLAAWAGFGLFNIIAGV 74 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------H---HHHHHHHHHHHHHHHHHHH
Confidence 3566778888888999999999999999999999999999998754210 1 1122222233334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (607)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 216 (607)
...++..++..++..+++.++|+|++++|+.+|++.++|++++|+++|++.+.+.+...+...+..++.+++.+++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (588)
T PRK13657 75 LVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFM 154 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666777777888889999999999999999999999999999999999888888888888888888888889999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 007337 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (607)
Q Consensus 217 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (607)
+|++++++++++|++.++..++.++.++..++..+..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+
T Consensus 155 ~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (588)
T PRK13657 155 NWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMP 234 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888889999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007337 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (607)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (607)
..+.......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+..+..+++|+.++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~ 314 (588)
T PRK13657 235 VLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVED 314 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 88887777777778888888888999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------
Q 007337 377 RVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------ 438 (607)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------ 438 (607)
.+++.+......+..+..+.|+++||+|+|+++ +++|+|+||+++|||++||||+|||||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I 392 (588)
T PRK13657 315 AVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI 392 (588)
T ss_pred CCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence 754422211111111223579999999999743 469999999999999999999999999
Q ss_pred ------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCC
Q 007337 439 ------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500 (607)
Q Consensus 439 ------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~ 500 (607)
|+||||||++|+|||||||++++| +.+|++++++++.+++++++.++|+|+||.+||+|.+
T Consensus 393 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~ 471 (588)
T PRK13657 393 LIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQ 471 (588)
T ss_pred EECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCC
Confidence 999999999999999999999986 7899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEec
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 580 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G 580 (607)
|||||||||+||||++++|+|+|||||||+||+++|+.+.+.|.+..+++|+|+||||++.++.||+|++|++|+++|.|
T Consensus 472 LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551 (588)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCCchHHHHHHhhcC
Q 007337 581 THEELLSKGGVYTALVKRQLQE 602 (607)
Q Consensus 581 ~~~eL~~~~g~y~~l~~~~~~~ 602 (607)
+|+||+++++.|+++++.+..+
T Consensus 552 ~~~~l~~~~~~y~~l~~~~~~~ 573 (588)
T PRK13657 552 SFDELVARGGRFAALLRAQGML 573 (588)
T ss_pred CHHHHHHCCChHHHHHHHhhcc
Confidence 9999999999999999866443
No 22
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=7.4e-84 Score=721.89 Aligned_cols=533 Identities=41% Similarity=0.644 Sum_probs=474.4
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (607)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (607)
++.++++++++++.+.+.+++.++..++.++.|++++.++|.+..... ...+..++++++++.++..++.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 77 (576)
T TIGR02204 6 LAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--------SGLLNRYFAFLLVVALVLALGTAA 77 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888889999999999999999999999998543221 112223333444555556677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (607)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 217 (607)
+.++..+++.++...+|..+++++++.|.++|++.++|++++|+++|++.+++++...+..++.+++.+++.+++++.++
T Consensus 78 ~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (576)
T TIGR02204 78 RFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITS 157 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999988888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 007337 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (607)
Q Consensus 218 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (607)
|++++++++.+|+.+++..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++|.+..++..+...+.
T Consensus 158 ~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (576)
T TIGR02204 158 PKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQR 237 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888899999999999999999999999999999999999999999999999999888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
.+.......+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..++..+..+.++..+.+|+.++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~ 317 (576)
T TIGR02204 238 IRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQA 317 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77766666666666666677788889999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCC-CCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------
Q 007337 378 VSSMPKSGNQ-CPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------ 438 (607)
Q Consensus 378 ~~~~~~~~~~-~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------ 438 (607)
+++.+..... .+..+..+.|+++||+|+|++++++++|+|+||+++|||+++|+|+|||||
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I 397 (576)
T TIGR02204 318 EPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397 (576)
T ss_pred CCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence 6542211111 111122357999999999986433679999999999999999999999999
Q ss_pred ------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCC
Q 007337 439 ------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500 (607)
Q Consensus 439 ------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~ 500 (607)
++|+||||++|+|||||||++++| +.++++++++++.++++++++.+|+|+||++||+|.+
T Consensus 398 ~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~ 476 (576)
T TIGR02204 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT 476 (576)
T ss_pred EECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCc
Confidence 899999999999999999999986 6889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEec
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 580 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G 580 (607)
|||||||||+||||++++|+|+|||||||+||+++|+.+.+.|+++.+++|+|+||||++.++.||+|++|++|+++|.|
T Consensus 477 LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g 556 (576)
T TIGR02204 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQG 556 (576)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeee
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhcCCchHHHHHHh
Q 007337 581 THEELLSKGGVYTALVKRQ 599 (607)
Q Consensus 581 ~~~eL~~~~g~y~~l~~~~ 599 (607)
+|++|+++++.|++|++.|
T Consensus 557 ~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 557 THAELIAKGGLYARLARLQ 575 (576)
T ss_pred cHHHHHHcCChHHHHHhhc
Confidence 9999999999999998765
No 23
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.3e-83 Score=716.75 Aligned_cols=529 Identities=28% Similarity=0.412 Sum_probs=468.8
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (607)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (607)
+++++++++++++.+++.++++++..++.++.|++++.++|.+..... . . .+++.+++..++..+..++
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~--------~--~-~~~~~~~~~~~~~~~~~~~ 75 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD--------V--L-PTLALWAGFGVFNTIAYVL 75 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------H--H-HHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999999999998754311 0 0 1111222233445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (607)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 217 (607)
..++..++..++..++|.++|++++++|+++|+++++|++++|+++|++.+.+++...+...+..++.+++.+++++.++
T Consensus 76 ~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 155 (585)
T TIGR01192 76 VAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMD 155 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777778888888899999999999999999999999999999999999988888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 007337 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (607)
Q Consensus 218 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (607)
|.+++++++++|++.++..++.++.++..++..+..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (585)
T TIGR01192 156 WRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPV 235 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989998999999999999999999999999999999999999999999999999999888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
.+.......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+.++..+.+|+.++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~ 315 (585)
T TIGR01192 236 LDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDS 315 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77777777777777777788888999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------
Q 007337 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------- 438 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------- 438 (607)
+++..+.....+.+...+.|+++||+|+|+++ .++|+|+||+|++||++||||||||||
T Consensus 316 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~ 393 (585)
T TIGR01192 316 VFQREEPADAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393 (585)
T ss_pred CccccCCccCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE
Confidence 54432211111111223579999999999753 368999999999999999999999999
Q ss_pred -----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 -----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 -----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
++||||||++|++||+|||+++.+ +.++++++++++.+++++++.++|+|++|.+||+|.+|
T Consensus 394 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L 472 (585)
T TIGR01192 394 IDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472 (585)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence 899999999999999999999986 78999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecC
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 581 (607)
||||||||+||||++++|+|+|||||||+||+++|+.+.++|++..+++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 473 SgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~ 552 (585)
T TIGR01192 473 SGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGS 552 (585)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhhcCCchHHHHHHhh
Q 007337 582 HEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 582 ~~eL~~~~g~y~~l~~~~~ 600 (607)
|+||++++|.|+++++.+.
T Consensus 553 ~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 553 FQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred HHHHHHCCChHHHHHHhCc
Confidence 9999999999999998764
No 24
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.7e-85 Score=670.45 Aligned_cols=522 Identities=31% Similarity=0.466 Sum_probs=454.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 72 LIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVA 151 (607)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (607)
++.++.+.+.+-......|.+++..+|.+......+. .++.....++.++++.+...++..++...+.++.+++.+
T Consensus 32 v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a----~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR 107 (591)
T KOG0057|consen 32 VFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPA----VLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIR 107 (591)
T ss_pred HHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444567788999999999998752222221 233334556677777888899999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Q 007337 152 RLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF-ATSWKLTLLALVVVPA 230 (607)
Q Consensus 152 ~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~-~~~~~l~li~l~~~~l 230 (607)
+...++|.+++.+++++|.+..+|++.+.+.+....+.+++...+..++..++-+.+....++ ...+..+++++..+..
T Consensus 108 ~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~ 187 (591)
T KOG0057|consen 108 DSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGA 187 (591)
T ss_pred HHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998888777766666555554443333 3566677777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 231 ISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNA 310 (607)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (607)
+..+.........+.+++...+.+.....+.|++.|.++||.||.|+++.++|.....+..+...+.....++.+.....
T Consensus 188 Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~ 267 (591)
T KOG0057|consen 188 YAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKA 267 (591)
T ss_pred hheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHH
Confidence 77666667777778889999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCC
Q 007337 311 ASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPL 390 (607)
Q Consensus 311 ~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~ 390 (607)
+.....+.+++++..-+.++.+|+|+++....+..++..|+..++..+..+.++...+..++...+......+. +.|.
T Consensus 268 iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i 345 (591)
T KOG0057|consen 268 IFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPI 345 (591)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCc
Confidence 88888888888888888899999999999999999999999999999999999999988877765543332221 2233
Q ss_pred CCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------
Q 007337 391 GDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------- 438 (607)
Q Consensus 391 ~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------- 438 (607)
...++.|+|+||+|+|++ .+++|+++||+|++||+|||||+|||||
T Consensus 346 ~~~~~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~Sl 423 (591)
T KOG0057|consen 346 ELFGGSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESL 423 (591)
T ss_pred ccCCCcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHh
Confidence 344567999999999985 4569999999999999999999999999
Q ss_pred ---eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 439 ---ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 439 ---i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|||||||..|||+||.+||.+|++ .+++||+.++||.+++||-|.+||+||+|.|||+|..||||||||++||||+
T Consensus 424 R~~Ig~VPQd~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 424 RQSIGVVPQDSVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAF 502 (591)
T ss_pred hhheeEeCCcccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHH
Confidence 999999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHH
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 595 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l 595 (607)
+|||||+++|||||+||++||+.+.+.++....+||+|+|+||++++++||+|++||+|+++|.|+|+||+++.+.|+++
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~ 582 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADL 582 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC
Q 007337 596 VKRQLQE 602 (607)
Q Consensus 596 ~~~~~~~ 602 (607)
|..|...
T Consensus 583 w~~~~~~ 589 (591)
T KOG0057|consen 583 WTTQTSS 589 (591)
T ss_pred hcccccc
Confidence 9877543
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=2.4e-83 Score=713.69 Aligned_cols=513 Identities=31% Similarity=0.497 Sum_probs=453.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 78 ALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNL 157 (607)
Q Consensus 78 ~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 157 (607)
+.++..++.++.|++++.++|.+...... ......+++.++++.++..++.+++.++..+.+.++..++|.++
T Consensus 3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 75 (569)
T PRK10789 3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMT-------TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDF 75 (569)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhccCCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788999999999977542211 11122344445555666778888888888899999999999999
Q ss_pred HHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHH
Q 007337 158 FSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM-FATSWKLTLLALVVVPAISVAVR 236 (607)
Q Consensus 158 ~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~~~l~li~l~~~~l~~~~~~ 236 (607)
|++++++|..+|++.++|++++|+++|++.+...+...+..++..++.++++++++ +.++|++++++++++|++.++..
T Consensus 76 ~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~ 155 (569)
T PRK10789 76 YRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIK 155 (569)
T ss_pred HHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998877777777777666666666655 57999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 237 KFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSV 316 (607)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (607)
++.++.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+....+...+..+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (569)
T PRK10789 156 RYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMAN 235 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999888888888877777777777777777
Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCc
Q 007337 317 IVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGE 396 (607)
Q Consensus 317 ~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 396 (607)
++++++|++++.+|.+|+|.++++..+...+..|+..++..+..++++..+.+|+.++++.+++...... +.++..+.
T Consensus 236 ~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~~~~~~~ 313 (569)
T PRK10789 236 LLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PVPEGRGE 313 (569)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CCCCCCCc
Confidence 7888899999999999999999999999999999999999999999999999999999987654322111 11123457
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++||+|+|+.. ++++|+|+||+|+||++++||||||||| ++
T Consensus 314 I~~~~v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 314 LDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred EEEEEEEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 9999999999854 4579999999999999999999999999 89
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 441 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 441 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
||+|+|++|++||+|||+++++ +.++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+
T Consensus 393 ~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 393 VVSQTPFLFSDTVANNIALGRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EEccCCeeccccHHHHHhcCCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999986 789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHhh
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~~ 600 (607)
|+|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++.|+|+||+++++.|+++++.|.
T Consensus 472 illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 551 (569)
T PRK10789 472 ILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQ 551 (569)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhh
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 007337 601 Q 601 (607)
Q Consensus 601 ~ 601 (607)
.
T Consensus 552 ~ 552 (569)
T PRK10789 552 L 552 (569)
T ss_pred h
Confidence 4
No 26
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.7e-83 Score=711.12 Aligned_cols=489 Identities=24% Similarity=0.344 Sum_probs=430.4
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRA 139 (607)
Q Consensus 60 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (607)
+++++.+++++.++..++++++..++.++.|++++.++|.+..... .. ....+++.++++.++..++.++..
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~ 74 (529)
T TIGR02868 3 RILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-------VL-YLSVAAVAVRAFGIGRAVFRYLER 74 (529)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-------hH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888899999999999999999999999997653211 01 111122223344566777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007337 140 WLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK 219 (607)
Q Consensus 140 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 219 (607)
++..+++.++..++|.++|+|++++|..+|++.++|++++|+++|++.+++.+...+..++..++.++++++++++++|.
T Consensus 75 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (529)
T TIGR02868 75 LVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVP 154 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 220 LTLLALVVVPAISVAVRKFG-RFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQA 298 (607)
Q Consensus 220 l~li~l~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 298 (607)
+++++++++|++.++..++. +..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 155 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (529)
T TIGR02868 155 AALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAA 234 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887766654444 44466677788888999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007337 299 KVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRV 378 (607)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~ 378 (607)
+..+....+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~ 314 (529)
T TIGR02868 235 RATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAK 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888888888888889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCC--CCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------
Q 007337 379 SSMPKSGN--QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------ 438 (607)
Q Consensus 379 ~~~~~~~~--~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------ 438 (607)
++.+.... ..+..+..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||||||||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 392 (529)
T TIGR02868 315 GPRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV 392 (529)
T ss_pred CCcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence 54322111 11111233579999999999854 369999999999999999999999999
Q ss_pred -----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 -----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 -----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
|+||||||+||+|||||||++|+| ++++|++++|++.|+++++|++||+||||+|||+|.+|
T Consensus 393 ~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 471 (529)
T TIGR02868 393 TLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471 (529)
T ss_pred EECCEEhhhHHHHHHhheEEEccCcccccccHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence 699999999999999999999987 78999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCc
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRL 559 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl 559 (607)
|||||||||||||+++|||||||||||||||++||+.|+++|.+..+++|+|+||||+
T Consensus 472 SGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 472 SGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999999988999999999996
No 27
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-83 Score=658.82 Aligned_cols=522 Identities=25% Similarity=0.321 Sum_probs=450.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 67 PDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSAS 146 (607)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (607)
..++.+.++++++++..+.++..-.+.+++|..-.-.+. . ....+......+=++.+...+.+|......+...
T Consensus 13 ~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~---~---~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~At 86 (573)
T COG4987 13 RHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGL---A---YIFNVMLPSAGVRGLAILRTAARYVERLVSHDAT 86 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 367788889999998888888888889999975432211 0 0111122233344556778888999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007337 147 ERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALV 226 (607)
Q Consensus 147 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 226 (607)
.++..++|.++|+++...+..-..+.++||++||+..|++.+++.+...+.+++..++..++..+.+.+++|++++....
T Consensus 87 frvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~ 166 (573)
T COG4987 87 FRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGL 166 (573)
T ss_pred HHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888888999998876554
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 227 VV-PAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFF 305 (607)
Q Consensus 227 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (607)
.+ .+.+++...+.+..++..++.....+.+.+.+.|.++|...++.||.++.+.+.+.+....+.+.+.+..+...+..
T Consensus 167 ~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~ 246 (573)
T COG4987 167 ILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSD 246 (573)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 44455667788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 007337 306 GGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLS-SLYTVAMKAAGASRRVFQLLDRVSSMPKS 384 (607)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~-~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 384 (607)
++..++..+..+..+.+.+..+-.|..+.-....+........+++..+. ..+....+...|++|+.++.+++++...+
T Consensus 247 a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~ 326 (573)
T COG4987 247 AILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFP 326 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCC
Confidence 98888888877744444455566677764444444444455566666666 77788999999999999999988765443
Q ss_pred CCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------
Q 007337 385 GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------- 438 (607)
Q Consensus 385 ~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------- 438 (607)
....+ .....++++||+|+||++ ++++|+|+||++++||+|||+|+|||||
T Consensus 327 ~~~~~--~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~ 403 (573)
T COG4987 327 DEQTA--TTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIA 403 (573)
T ss_pred ccccC--CccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChh
Confidence 11111 122279999999999976 5689999999999999999999999999
Q ss_pred ----------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ----------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ----------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
|++++|.++||++|+|||+.+++| ++|||+++++++.++|++++++.|+||+|.+||+|.+||||||||
T Consensus 404 ~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rR 482 (573)
T COG4987 404 SLDEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRR 482 (573)
T ss_pred hCChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHH
Confidence 899999999999999999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+||||+|++|+|++||||||.+||++||+++.+.|.+.+++||+|+||||+.-+++||+|+|||+|+|+|+|+|.||+++
T Consensus 483 LAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 483 LALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHH
Q 007337 589 GGVYTALVKR 598 (607)
Q Consensus 589 ~g~y~~l~~~ 598 (607)
+|.|+++++.
T Consensus 563 ~g~~~~l~q~ 572 (573)
T COG4987 563 NGRYKRLYQL 572 (573)
T ss_pred ccHHHHHhcc
Confidence 9999999863
No 28
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-83 Score=774.44 Aligned_cols=550 Identities=22% Similarity=0.293 Sum_probs=450.6
Q ss_pred cccCCCCCccCCCCCcCcccchH-------------HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007337 36 ASENGNVTDLEHGDAVPAANVGF-------------GRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSG 102 (607)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~ 102 (607)
..+..|++++++.++.+.....+ ..++.+++.+++.++.++++.++..++.++.|++++.+++.+..
T Consensus 254 ~L~~~dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~ 333 (1495)
T PLN03232 254 PITEKDVWQLDQWDQTETLIKRFQRCWTEESRRPKPWLLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQE 333 (1495)
T ss_pred CCChhhccCCChhhhHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566777777666533321111 22344566778888888888999999999999999999998754
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHH
Q 007337 103 DTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLS 182 (607)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~ 182 (607)
... . . ..+.+++++++..++..++.....+...+++.++...++..+|+|+++++..++++.++|+++|+++
T Consensus 334 ~~~-~------~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls 405 (1495)
T PLN03232 334 GDP-A------W-VGYVYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMIT 405 (1495)
T ss_pred CCc-c------c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHH
Confidence 321 0 1 1122333444444445555443444446889999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 183 EDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEE 262 (607)
Q Consensus 183 ~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 262 (607)
+|++++++++ ..++.++..++.+++++++++....+.++++++++++++++..++.++.++.+++.++..+++.+.+.|
T Consensus 406 ~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E 484 (1495)
T PLN03232 406 TDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINE 484 (1495)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 567778888888887777666543333344444444555566778899999999999999999999999
Q ss_pred HHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHH
Q 007337 263 SFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFIL 342 (607)
Q Consensus 263 ~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~ 342 (607)
.++|+++||+|+||+.+.+++.+.++++.+...+......+...+.... ...+.++++|++++.+|.+|+|.+++++.
T Consensus 485 ~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~ 562 (1495)
T PLN03232 485 ILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLS 562 (1495)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 9999999999999999999999999998888777766655543322221 22334567889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEe
Q 007337 343 YSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKL 422 (607)
Q Consensus 343 ~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i 422 (607)
++..+..|+..++..+..+.++.++++|+.++++.+++...... +.....+.|+++|++|+|++++++++|+|+||+|
T Consensus 563 l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i 640 (1495)
T PLN03232 563 LFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEI 640 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEE
Confidence 99999999999999999999999999999999987654221111 1111234699999999998644468999999999
Q ss_pred eCCCEEEEEcCCCCcc------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcC
Q 007337 423 LSGSKIALVGPSGGGK------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMAN 478 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~ 478 (607)
++||++||||+||||| |+||+|+||||+|||||||+||+ +++++++++|+++|+
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~--~~~~e~~~~vl~~~~ 718 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGS--DFESERYWRAIDVTA 718 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCC--ccCHHHHHHHHHHhC
Confidence 9999999999999999 99999999999999999999996 479999999999999
Q ss_pred chHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHH-HHHHHhcCCCeEEEEcc
Q 007337 479 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ-DAMDSLMKGRTVLVIAH 557 (607)
Q Consensus 479 l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~-~~l~~~~~~~TvI~ItH 557 (607)
+++|++.||+||+|+|||+|.+|||||||||+||||+|+|||||||||||||||+++++.+. +++...+++||+|+|||
T Consensus 719 L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH 798 (1495)
T PLN03232 719 LQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTN 798 (1495)
T ss_pred CHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999988775 55777778999999999
Q ss_pred CchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHhh
Q 007337 558 RLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 558 rl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~~ 600 (607)
|+++++.||+|++|++|+|+|+|+|+||+++++.|+++++.+.
T Consensus 799 ~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 799 QLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAG 841 (1495)
T ss_pred ChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcc
Confidence 9999999999999999999999999999999999999987553
No 29
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.8e-83 Score=769.71 Aligned_cols=548 Identities=21% Similarity=0.288 Sum_probs=450.6
Q ss_pred ccCCCCCccCCCCCcCcccchH-------------HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 007337 37 SENGNVTDLEHGDAVPAANVGF-------------GRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGD 103 (607)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~ 103 (607)
.+..+++++++.++.+.....+ +.++.+++.+++.++.++++.++..++.++.|++++.+++.+...
T Consensus 255 L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~ 334 (1622)
T PLN03130 255 LTEKDVWKLDTWDQTETLYRSFQKCWDEELKKPKPWLLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNG 334 (1622)
T ss_pred CChhhccCCChhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566777777666533211111 223455677888888899999999999999999999999988643
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHH
Q 007337 104 TETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSE 183 (607)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~ 183 (607)
.. . +.. +.+++++++..++..++.....+...+++.++...++..+|+|+++++..++++.++|+++|++++
T Consensus 335 ~~-~------~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~ 406 (1622)
T PLN03130 335 EP-A------WIG-YIYAFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTT 406 (1622)
T ss_pred Cc-c------hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHH
Confidence 21 0 111 112222222223333333222233457889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 184 DTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEES 263 (607)
Q Consensus 184 d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 263 (607)
|++++++++ ..++.+|..++.+++++++++...++.++++++++++++++..++.+++++.+++.++..+++.+.+.|.
T Consensus 407 Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~ 485 (1622)
T PLN03130 407 DAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEV 485 (1622)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999987 4578888888888888888777655656665556666667777888889999999999999999999999
Q ss_pred HhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHH
Q 007337 264 FGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILY 343 (607)
Q Consensus 264 l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~ 343 (607)
++|+++||+|+||+.+.+++.+.++++.+...+......+...+.... ...+.++++|++.+.+|.+|+|.+++++.+
T Consensus 486 L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l 563 (1622)
T PLN03130 486 LAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSI--PVLVTVVSFGVFTLLGGDLTPARAFTSLSL 563 (1622)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999999999999988877666665555444332222 123456678889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEee
Q 007337 344 SLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLL 423 (607)
Q Consensus 344 ~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~ 423 (607)
+..+..|+..++..+..+.++.++++|+.++++.++....... +..+..+.|+++|++|+|++++++++|+|+||+|+
T Consensus 564 ~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~ 641 (1622)
T PLN03130 564 FAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVP 641 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEec
Confidence 9999999999999999999999999999999976543221111 11112346999999999986544679999999999
Q ss_pred CCCEEEEEcCCCCcc------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCc
Q 007337 424 SGSKIALVGPSGGGK------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANA 479 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l 479 (607)
+||++|||||||||| |+||+|+||||+|||||||+||+| +++++|++|+++|+|
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~--~d~e~y~~vl~a~~L 719 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSP--FDPERYERAIDVTAL 719 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCc--ccHHHHHHHHHHhCc
Confidence 999999999999999 899999999999999999999964 789999999999999
Q ss_pred hHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHH-HHHHHHhcCCCeEEEEccC
Q 007337 480 HDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV-QDAMDSLMKGRTVLVIAHR 558 (607)
Q Consensus 480 ~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i-~~~l~~~~~~~TvI~ItHr 558 (607)
++|++.||+|++|+|||+|.+|||||||||+||||+|+|||||||||||||||+++++.+ .++++..+++||+|+||||
T Consensus 720 ~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~ 799 (1622)
T PLN03130 720 QHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQ 799 (1622)
T ss_pred HHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999988766 5678877789999999999
Q ss_pred chhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHh
Q 007337 559 LSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599 (607)
Q Consensus 559 l~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~ 599 (607)
+++++.||+|++|++|+|+|+|+|+||+++++.|+++++.+
T Consensus 800 l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~ 840 (1622)
T PLN03130 800 LHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENA 840 (1622)
T ss_pred HhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhc
Confidence 99999999999999999999999999999999999998754
No 30
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1e-82 Score=769.97 Aligned_cols=529 Identities=22% Similarity=0.272 Sum_probs=441.7
Q ss_pred chHHHHHHhhcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 56 VGFGRVLALAKPDAGK-LIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 134 (607)
Q Consensus 56 ~~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (607)
..+..++.|++...+. .++.+++.++..++....+++++.+.|....... ... . ..+..+++++.++..++
T Consensus 950 v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~-~~~----~---~~~~~iy~~l~i~~~~~ 1021 (1522)
T TIGR00957 950 VELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGT-QNN----T---SLRLSVYGALGILQGFA 1021 (1522)
T ss_pred ccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CCC----c---chHHHHHHHHHHHHHHH
Confidence 4567777777764333 2334444455566677788888888764221100 000 0 01223444445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 135 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (607)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 214 (607)
.+++.++....+.+...++|.++++++++.|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.+++++
T Consensus 1022 ~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~ 1101 (1522)
T TIGR00957 1022 VFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVIL 1101 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 007337 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 294 (607)
Q Consensus 215 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 294 (607)
..+|++++++++++++++++..++.+..++..+......+...+++.|+++|+++||+|++|+.+.+++.+..+...+..
T Consensus 1102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~ 1181 (1522)
T TIGR00957 1102 LATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAY 1181 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777777777777778888888888888999999999999999999999999999999988888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 295 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI-TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQ 373 (607)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~ 373 (607)
+.......+......++..+ ++++++.+.+. .+.+++|.+.+++.|...+..|+..+...+..+.++.++.+|+.+
T Consensus 1182 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~ 1258 (1522)
T TIGR00957 1182 YPSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKE 1258 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555444444443433322 23334444443 578999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCC--CC-CCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------
Q 007337 374 LLDRVSSMPK--SG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------ 438 (607)
Q Consensus 374 ~l~~~~~~~~--~~-~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------ 438 (607)
+++.+++.+. .. .+.+.++..+.|+|+||+|+|+++ .+++|+|+||+|+|||+|||||+|||||
T Consensus 1259 ~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~ 1337 (1522)
T TIGR00957 1259 YSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE 1337 (1522)
T ss_pred HhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc
Confidence 9987665431 11 111223456789999999999865 3579999999999999999999999999
Q ss_pred ------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccc
Q 007337 439 ------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFV 494 (607)
Q Consensus 439 ------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~i 494 (607)
|+||||||+||+|||||||.++. +++|+++++|++.|+++++|.++|+||||+|
T Consensus 1338 ~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v 1415 (1522)
T TIGR00957 1338 SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS--QYSDEEVWWALELAHLKTFVSALPDKLDHEC 1415 (1522)
T ss_pred CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc--CCCHHHHHHHHHHcCcHHHHhhCccCCCcee
Confidence 99999999999999999999653 5899999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 007337 495 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 574 (607)
Q Consensus 495 ge~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G 574 (607)
||+|.||||||||||||||||+++|+||||||||||||++||+.|++.|++.+++||+|+||||++++.+||+|+|||+|
T Consensus 1416 ~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G 1495 (1522)
T TIGR00957 1416 AEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKG 1495 (1522)
T ss_pred cCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEecChhHHhhcCCchHHHHHH
Q 007337 575 EIVESGTHEELLSKGGVYTALVKR 598 (607)
Q Consensus 575 ~Ive~G~~~eL~~~~g~y~~l~~~ 598 (607)
+|+|.|+|+||++++|.|++|+++
T Consensus 1496 ~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1496 EVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred EEEEECCHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999976
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.2e-81 Score=754.73 Aligned_cols=531 Identities=20% Similarity=0.281 Sum_probs=415.9
Q ss_pred ccchHHHHHHhhcchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007337 54 ANVGFGRVLALAKPDA--GKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVG 131 (607)
Q Consensus 54 ~~~~~~~l~~~~~~~~--~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (607)
....|..++.|++... +.+.+.+++.++..++.+..+++++.+.|........ ...++++++++.++.
T Consensus 897 g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~----------~~~~~~i~~~l~~~~ 966 (1622)
T PLN03130 897 GVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG----------PLFYNLIYALLSFGQ 966 (1622)
T ss_pred CccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc----------hhHHHHHHHHHHHHH
Confidence 4456777778876633 2223334445566667777888888888753321110 012333455566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 132 SVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG 211 (607)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 211 (607)
.++.+++.+++...+.+...++|.+++++++++|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++
T Consensus 967 ~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1046 (1622)
T PLN03130 967 VLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFV 1046 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888899999999999999999999999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Q 007337 212 FMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETL 291 (607)
Q Consensus 212 ~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 291 (607)
+++.++|...++++.+..+++.+..++.+..++..+......++..+++.|+++|+++||+|++++++.+++.+..+...
T Consensus 1047 ~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1126 (1622)
T PLN03130 1047 LIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNI 1126 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 88888875444433333333344445556666777777778889999999999999999999999988777766666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 292 KLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGS-MT-----PGALTSFILYSLTVGSSVSGLSSLYTVAMKAA 365 (607)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-lt-----~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 365 (607)
+..+.......+......++. .+++++.+.+.+..+. .+ .+.+..++.+...+..++..+...+..+.++.
T Consensus 1127 ~~~~~~~~~~~wl~~~l~~~~---~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~ 1203 (1622)
T PLN03130 1127 RFTLVNMSSNRWLAIRLETLG---GLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 1203 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443332222222222222222 1222223333344331 11 23333444556667777788888888899999
Q ss_pred HHHHHHHHHhccCCCCCCC---CCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----
Q 007337 366 GASRRVFQLLDRVSSMPKS---GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---- 438 (607)
Q Consensus 366 ~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---- 438 (607)
++.+|+.++++.+++.+.. ..+.+.++..+.|+|+||+|+|+++ .+++|+|+||+|+|||+|||||+|||||
T Consensus 1204 ~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl 1282 (1622)
T PLN03130 1204 NAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSML 1282 (1622)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999999877654321 1112223445789999999999754 3579999999999999999999999999
Q ss_pred --------------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhC
Q 007337 439 --------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNF 486 (607)
Q Consensus 439 --------------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~l 486 (607)
|+||||||.||+|||||||.+++ +++|+++++||+.|+++++|++|
T Consensus 1283 ~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~tdeei~~Al~~a~l~~~I~~l 1360 (1622)
T PLN03130 1283 NALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHNDADLWESLERAHLKDVIRRN 1360 (1622)
T ss_pred HHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCHHHHHHHHHHcCcHHHHHhC
Confidence 99999999999999999999995 57999999999999999999999
Q ss_pred CccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcC
Q 007337 487 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSAD 566 (607)
Q Consensus 487 p~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD 566 (607)
|+||||+|||+|.||||||||||||||||+++|+||||||||||||++||+.|+++|++.+++||+|+||||++++++||
T Consensus 1361 p~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~D 1440 (1622)
T PLN03130 1361 SLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD 1440 (1622)
T ss_pred ccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEeEecChhHHhhc-CCchHHHHHHhh
Q 007337 567 TVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQL 600 (607)
Q Consensus 567 ~Iivl~~G~Ive~G~~~eL~~~-~g~y~~l~~~~~ 600 (607)
+|+|||+|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1441 rIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1441 RILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 9999999999999999999987 699999997543
No 32
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.1e-80 Score=688.58 Aligned_cols=492 Identities=25% Similarity=0.370 Sum_probs=437.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 68 DAGKLIIATVALLIASVSSILIPKFGGKIIDIVS-GDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSAS 146 (607)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (607)
+++.++.+++++++..++.+..|+++++++|.+. .... ...+..+++.++++.++..++.+++.++..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP--------LAELLPALGALALAVLLRALLGWLGERAAARAA 72 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999999999999999874 3211 122334455556666777888999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 007337 147 ERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALV 226 (607)
Q Consensus 147 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 226 (607)
.++..++|.++|++++++|..+|++.++|++++|+++|++.+++++...+..++..++.+++++++++.++|.+++++++
T Consensus 73 ~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~ 152 (529)
T TIGR02857 73 AAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLL 152 (529)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 227 VVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFG 306 (607)
Q Consensus 227 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (607)
++|+..++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+.......
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (529)
T TIGR02857 153 TAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSA 232 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877788888888888999999999999999999999999999999999999999999888888877777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 007337 307 GLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGN 386 (607)
Q Consensus 307 ~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~ 386 (607)
+..++..+..++++.++++.+.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.+++.....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~- 311 (529)
T TIGR02857 233 VLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA- 311 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-
Confidence 6676666666666667777778999999999999999999999999999999999999999999999998553322111
Q ss_pred CCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------
Q 007337 387 QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------- 438 (607)
Q Consensus 387 ~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------- 438 (607)
..+ ....+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+|||||
T Consensus 312 ~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~ 389 (529)
T TIGR02857 312 PVT-AAPAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADA 389 (529)
T ss_pred CCC-CCCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhC
Confidence 111 1123579999999999864 3579999999999999999999999999
Q ss_pred --------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 439 --------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 --------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
++||+|||++|++||||||+++.+ +.++++++++++.++++++++++|+||||.+||+|.+|||||||||+
T Consensus 390 ~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 390 DADSWRDQIAWVPQHPFLFAGTIAENIRLARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred CHHHHHhheEEEcCCCcccCcCHHHHHhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHH
Confidence 899999999999999999999976 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 571 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl 571 (607)
||||++++|+|+|||||||+||+++|+.+.++|+++.+++|+|+||||+++++.||+|++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999999999988899999999999999999999986
No 33
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=3.9e-80 Score=685.30 Aligned_cols=505 Identities=24% Similarity=0.330 Sum_probs=441.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 66 KPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSA 145 (607)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (607)
+++++.++..++++++..++.++.|++++.++|.+..... ...+..+++.++++.++..++.+++.++..++
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--------VPTLLMLTVLALGLYLFLGLLDALRSFVLVRI 73 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888999999999999999999999997753221 12233445556666677788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 007337 146 SERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLAL 225 (607)
Q Consensus 146 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l 225 (607)
+.++..++|.++|+|++++|+. ..++..+++.+|++.+++++.......+...+..++.+++++.++|+++++++
T Consensus 74 ~~~~~~~lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l 148 (544)
T TIGR01842 74 GEKLDGALNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILAL 148 (544)
T ss_pred HHHHHHHHHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999984 23567889999999999987763333333334444555788999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 226 VVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFF 305 (607)
Q Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (607)
+++|+++++..++.+..++..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+...
T Consensus 149 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (544)
T TIGR01842 149 GGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLS 228 (544)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777777888888889999999999999999999999999999999999999999999888888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 007337 306 GGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSG 385 (607)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 385 (607)
.+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..++++..+.+|+.++++.+++.....
T Consensus 229 ~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 308 (544)
T TIGR01842 229 NLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM 308 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC
Confidence 77777777777888899999999999999999999999999999999999999999999999999999998765432211
Q ss_pred CCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------
Q 007337 386 NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------- 438 (607)
Q Consensus 386 ~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------- 438 (607)
+.+...+.|+++||+|+|++. ++++|+|+||+++|||++||||+|||||
T Consensus 309 ---~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 309 ---PLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred ---CCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 111233579999999999754 3579999999999999999999999999
Q ss_pred ---------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 ---------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 ---------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
++||||+|++|++|++|||+++++ +.++++++++++.+++++++++||+|+||.+||+|.+|||||||||
T Consensus 385 ~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl 463 (544)
T TIGR01842 385 WDRETFGKHIGYLPQDVELFPGTVAENIARFGE-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRI 463 (544)
T ss_pred CCHHHHhhheEEecCCcccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHH
Confidence 899999999999999999998865 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+||||++++|+|+|||||||+||+++++.+.++|+++. +++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 464 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 464 ALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999999999999999999875 68999999999999999999999999999999999999753
No 34
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.1e-80 Score=738.72 Aligned_cols=535 Identities=27% Similarity=0.391 Sum_probs=472.4
Q ss_pred ccchHHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 54 ANVGFGRVLALA-KPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGS 132 (607)
Q Consensus 54 ~~~~~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (607)
.+..+..++++. +.+++.++++++++++.+++.++.|++++.++|.+.... .+..+++.++++.++..
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-----------~~~~~~~~~~~~~i~~~ 111 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-----------NVNDIIFSLVLIGIFQF 111 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHH
Confidence 345677788875 457778889999999999999999999999999764211 11223445556667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 133 VCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF 212 (607)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 212 (607)
++.+++.++..+++.++..++|.++|++++++|..||+..++|++++++++|++.+++.+...+..++..++++++++++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~ 191 (1466)
T PTZ00265 112 ILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIW 191 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007337 213 MFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLK 292 (607)
Q Consensus 213 l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 292 (607)
++.++|.+++++++++|+++++..++.+++++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+......+
T Consensus 192 ~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~ 271 (1466)
T PTZ00265 192 SLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSK 271 (1466)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888888888999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 293 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITG--------SMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKA 364 (607)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--------~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~ 364 (607)
...+..+..++...+..++..+..++++|+|++++.+| .+++|.+++++........++..+...+..++++
T Consensus 272 ~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a 351 (1466)
T PTZ00265 272 YILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKS 351 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888899999999999985 5889998887766665556666777788899999
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------
Q 007337 365 AGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------ 438 (607)
Q Consensus 365 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------ 438 (607)
..+++|+.++++.+++.+........+ ..+.|+|+||+|+|+.+++.++|+|+||+|++||++||||||||||
T Consensus 352 ~~a~~ri~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~l 430 (1466)
T PTZ00265 352 LEATNSLYEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKL 430 (1466)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 999999999998876543211111111 1247999999999986544579999999999999999999999999
Q ss_pred -------------------------------eEEEccCCCcccccHHHHhhcCCC-------------------------
Q 007337 439 -------------------------------ISIVSQEPVLFNCSIEENIAYGCD------------------------- 462 (607)
Q Consensus 439 -------------------------------i~~V~Q~~~Lf~gTIreNI~~g~~------------------------- 462 (607)
|+||+|+|.||++||+|||.+|.+
T Consensus 431 L~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (1466)
T PTZ00265 431 IERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNK 510 (1466)
T ss_pred HHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccc
Confidence 899999999999999999999741
Q ss_pred -------------------------------CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 463 -------------------------------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 463 -------------------------------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
.+.+++++++|++.++++++|..||+||||.+|++|.+|||||||||+|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaI 590 (1466)
T PTZ00265 511 RNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISI 590 (1466)
T ss_pred cccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHH
Confidence 1356789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCC---------------
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDG--------------- 574 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~G--------------- 574 (607)
|||++++|+|||||||||+||+++|+.|++.|+++. +++|+|+||||+++++.||+|+||++|
T Consensus 591 ARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~ 670 (1466)
T PTZ00265 591 ARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDP 670 (1466)
T ss_pred HHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccc
Confidence 999999999999999999999999999999999885 479999999999999999999999986
Q ss_pred --------------------------------EEeEecChhHHhh-cCCchHHHHHHhh
Q 007337 575 --------------------------------EIVESGTHEELLS-KGGVYTALVKRQL 600 (607)
Q Consensus 575 --------------------------------~Ive~G~~~eL~~-~~g~y~~l~~~~~ 600 (607)
+|+|+|+|+||++ .+|.|+.|++.|.
T Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 671 TKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred cccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 6999999998764
No 35
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3.9e-80 Score=745.40 Aligned_cols=532 Identities=20% Similarity=0.275 Sum_probs=424.9
Q ss_pred cchHHHHHHhhcchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 55 NVGFGRVLALAKPDAGKLI--IATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGS 132 (607)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~--~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (607)
...|+.++.|++...+... ..+++.++..++....+++++.+.+.-..... . .++.+++++.++..
T Consensus 945 ~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~~~~---------~---~~l~~y~~~~~~~~ 1012 (1560)
T PTZ00243 945 SVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFKLSA---------A---TYLYVYLGIVLLGT 1012 (1560)
T ss_pred cccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc---------c---cHHHHHHHHHHHHH
Confidence 4467777777776443322 22222234445555555666555442111100 0 11112222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 133 VCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF 212 (607)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 212 (607)
++..++.+.....+.+...++|..+|+++++.|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.+++
T Consensus 1013 ~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~ 1092 (1560)
T PTZ00243 1013 FSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV 1092 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445556677789999999999999999999999999999999999999999999888888888899988888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007337 213 MFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLK 292 (607)
Q Consensus 213 l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 292 (607)
+++.+|.+.++++.+..+++.+..++.+..++.++......++..+++.|+++|+++||+|++|+.+.+++.+..+...+
T Consensus 1093 ~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~ 1172 (1560)
T PTZ00243 1093 TSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYS 1172 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 88888866555554444555566667777888888888899999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 293 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLT--ITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRR 370 (607)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~r 370 (607)
..+.......+......++..+..+++.+++.+.. ..+.+++|.+..++.+...+..|+..+...+..+.++..+++|
T Consensus 1173 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eR 1252 (1560)
T PTZ00243 1173 CSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVER 1252 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766665555555555555555444444444433 3456889999888999999999999999999999999999999
Q ss_pred HHHHhccCCCCC-C--------------------------CCCC---CCCCCCCCcEEEEeEEEECCCCCCCcccccceE
Q 007337 371 VFQLLDRVSSMP-K--------------------------SGNQ---CPLGDQDGEVELDDVWFAYPSRPNHMVLKGITL 420 (607)
Q Consensus 371 i~~~l~~~~~~~-~--------------------------~~~~---~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl 420 (607)
+.++++..++++ . ...+ .+.++..+.|+|+||+|+|+++ .+++|+||||
T Consensus 1253 i~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf 1331 (1560)
T PTZ00243 1253 LLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSF 1331 (1560)
T ss_pred HHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceE
Confidence 999996433211 0 0000 0111234689999999999764 4579999999
Q ss_pred EeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCcccccHHHHhhcCCCCC
Q 007337 421 KLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLFNCSIEENIAYGCDGK 464 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~ 464 (607)
+|+|||+|||||+||||| |+||||||+||+|||||||.+++ +
T Consensus 1332 ~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~--~ 1409 (1560)
T PTZ00243 1332 RIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL--E 1409 (1560)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc--C
Confidence 999999999999999999 99999999999999999999873 6
Q ss_pred CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC-CCEEEEeccCCCCCHHHHHHHHHHH
Q 007337 465 ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN-PRILLLDEATSALDAESEYLVQDAM 543 (607)
Q Consensus 465 ~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~-~~IllLDE~TSaLD~~te~~i~~~l 543 (607)
++|+++++||+.|+++++|.++|+||||+|||+|.||||||||||||||||+++ |+||||||||||||++||+.|++.|
T Consensus 1410 ~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L 1489 (1560)
T PTZ00243 1410 ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATV 1489 (1560)
T ss_pred CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999996 8999999999999999999999999
Q ss_pred HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc-CCchHHHHHHhhc
Q 007337 544 DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVKRQLQ 601 (607)
Q Consensus 544 ~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~~l~~~~~~ 601 (607)
++.++++|+|+||||++++.+||+|+|||+|+|+|.|+|+||+++ +|.|++|++.+.+
T Consensus 1490 ~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1490 MSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred HHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999999984 8999999987643
No 36
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.8e-80 Score=744.99 Aligned_cols=532 Identities=21% Similarity=0.301 Sum_probs=410.9
Q ss_pred ccchHHHHHHhhcchhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007337 54 ANVGFGRVLALAKPDAG--KLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVG 131 (607)
Q Consensus 54 ~~~~~~~l~~~~~~~~~--~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (607)
....|..++.|++..++ .+...+++.++..++.....++++.+.+.-..... . ...+++.++++.++.
T Consensus 894 g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~---~-------~~~~l~~y~~l~~~~ 963 (1495)
T PLN03232 894 GIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPKSY---S-------PGFYIVVYALLGFGQ 963 (1495)
T ss_pred CcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCC---C-------cchHHHHHHHHHHHH
Confidence 44567778888876442 22233333334444444444555555442110000 0 012344455566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 132 SVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG 211 (607)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 211 (607)
.++.+++.++....+.+...++|.++++++++.|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++
T Consensus 964 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1043 (1495)
T PLN03232 964 VAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888899999999999999999999999999999999999999999999999999998888888888888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHH
Q 007337 212 FMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETL 291 (607)
Q Consensus 212 ~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 291 (607)
+++.+++...++++.+..+++....++.+..++..+......+...+++.|+++|+++||+|++++++.+++.+..+...
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~ 1123 (1495)
T PLN03232 1044 LIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNI 1123 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 87777754443333322222333344445556677777888899999999999999999999999988887777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 292 KLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTI-TGSM----T-PGALTSFILYSLTVGSSVSGLSSLYTVAMKAA 365 (607)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~l----t-~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 365 (607)
+..+.......+...... .+..+++++.+.+.+. .+.+ . .+.+..++.+...+..|+..+...+..+..+.
T Consensus 1124 ~~~~~~~~~~~wl~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~ 1200 (1495)
T PLN03232 1124 RFTLANTSSNRWLTIRLE---TLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSL 1200 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444332222222211111 1122222233333333 2332 1 22333466677788889999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCC--C-CCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----
Q 007337 366 GASRRVFQLLDRVSSMPKS--G-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---- 438 (607)
Q Consensus 366 ~~~~ri~~~l~~~~~~~~~--~-~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---- 438 (607)
++.+|+.++++.+++.+.. . .+.+.++..+.|+|+||+|+|+++ .+++|+|+||+|+|||+|||||+|||||
T Consensus 1201 ~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~ 1279 (1495)
T PLN03232 1201 NSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279 (1495)
T ss_pred HHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999999877654321 1 111223445789999999999654 3579999999999999999999999999
Q ss_pred --------------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhC
Q 007337 439 --------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNF 486 (607)
Q Consensus 439 --------------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~l 486 (607)
|+||||||+||+|||||||++++ +++|+++++|++.|+++++|+++
T Consensus 1280 ~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHHHHHHHHHHcCCHHHHHhC
Confidence 99999999999999999999984 68999999999999999999999
Q ss_pred CccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcC
Q 007337 487 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSAD 566 (607)
Q Consensus 487 p~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD 566 (607)
|+||||+|||+|.||||||||||||||||+++|+||||||||||||++||+.|+++|++.+++||+|+||||++++.+||
T Consensus 1358 p~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~D 1437 (1495)
T PLN03232 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCD 1437 (1495)
T ss_pred cCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCEEeEecChhHHhhcC-CchHHHHHHhhc
Q 007337 567 TVAVVSDGEIVESGTHEELLSKG-GVYTALVKRQLQ 601 (607)
Q Consensus 567 ~Iivl~~G~Ive~G~~~eL~~~~-g~y~~l~~~~~~ 601 (607)
+|+|||+|+|+|.|+|+||++++ +.|++|++.+..
T Consensus 1438 rIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1438 KILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999999999999999876 599999986643
No 37
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-82 Score=632.02 Aligned_cols=457 Identities=35% Similarity=0.467 Sum_probs=417.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 007337 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM-FAT 216 (607)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~ 216 (607)
+..++..+++.....+--+.|.|+.++++.|+.++.+|.+...+......+.......+..++...+-+...++++ ..+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3445667788888888999999999999999999999998888887777777777766666666666665555554 458
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 007337 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (607)
Q Consensus 217 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (607)
+|+.++++++++.++.++...........+++..++.+..+....|.+-+.+++|.|+.|+.+..+|....+.+.++..+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999999888887777777778888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007337 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (607)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (607)
......+++.....+.......+...+...+..|++|+|+++....+..++..|+..++..+.++.++....++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 99988999888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCC-CCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------
Q 007337 377 RVSSMPKSGNQCPLG-DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------- 438 (607)
Q Consensus 377 ~~~~~~~~~~~~~~~-~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------- 438 (607)
.+.+..+.+..++.+ -..+.|.|+||+|.|+++ .++|+|+||++++|+++||||+||+||
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 887766555444444 334779999999999864 689999999999999999999999999
Q ss_pred -------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCC
Q 007337 439 -------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 499 (607)
Q Consensus 439 -------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~ 499 (607)
||.||||..||++|+..||.+|+| +++++|++.|+++++++++|+++|+||+|.|||+|-
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEe
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~ 579 (607)
.||||||||+||||+++++|+||+|||||||||.+||+.|+.+|++..+++|.++|+|||+|+-+||+|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhhcCCchHHHHH
Q 007337 580 GTHEELLSKGGVYTALVK 597 (607)
Q Consensus 580 G~~~eL~~~~g~y~~l~~ 597 (607)
|+|+||++++|.|+.||.
T Consensus 479 g~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAAGGLYAEMWR 496 (497)
T ss_pred CcHHHHHHcCChHHHHhc
Confidence 999999999999999995
No 38
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.7e-79 Score=703.64 Aligned_cols=537 Identities=25% Similarity=0.358 Sum_probs=457.8
Q ss_pred CcccchHHHHHHhhcchhHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 007337 52 PAANVGFGRVLALAKPDAGKL-II-ATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVI 129 (607)
Q Consensus 52 ~~~~~~~~~l~~~~~~~~~~~-~~-~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (607)
+.....|+-++.|++...+.+ .. .+++.++...+....-+++.++.|.-......+ .....+.+++.++.+
T Consensus 797 ~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~-------~~~~~~~~vY~~l~~ 869 (1381)
T KOG0054|consen 797 ETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT-------VSTSFYLGVYALLGV 869 (1381)
T ss_pred hcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC-------CCcchHHHHHHHHHH
Confidence 446678888999998833333 32 344555555666666677777776432111100 001123445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 130 VGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIG 209 (607)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~ 209 (607)
...++...+.+.+...+.+....+...+++++++.|+.||+++++|.|+||+++|++.+++.++..+..++...++++..
T Consensus 870 ~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 870 ASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 67777778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHH
Q 007337 210 LGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDE 289 (607)
Q Consensus 210 ~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~ 289 (607)
++++....|+..++++.+..+++.+..++.+..+++.+-....++...+++.|+++|+.|||+|+.|++|.+++.+..+.
T Consensus 950 ~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~ 1029 (1381)
T KOG0054|consen 950 LVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDE 1029 (1381)
T ss_pred HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 290 TLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASR 369 (607)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 369 (607)
..+..+......-++..-..++..+...++..+....- .+.+++|.+-..+.|+..+...++.+.....++....+|.+
T Consensus 1030 ~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~-~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVE 1108 (1381)
T KOG0054|consen 1030 NSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLP-SGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVE 1108 (1381)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhh
Confidence 88776665444444444445555444444333332222 22277899999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCC---CCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------
Q 007337 370 RVFQLLDRVSSMP---KSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------- 438 (607)
Q Consensus 370 ri~~~l~~~~~~~---~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------- 438 (607)
|+.++.+.|+|.+ +...+++.+|..|.|+|+|++.+|.++ .++||+||||+|+|||||||||++||||
T Consensus 1109 Rv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF 1187 (1381)
T KOG0054|consen 1109 RVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF 1187 (1381)
T ss_pred HHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH
Confidence 9999999776622 112245667888999999999999876 5789999999999999999999999999
Q ss_pred ----------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccc
Q 007337 439 ----------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKY 490 (607)
Q Consensus 439 ----------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~ 490 (607)
++++||||.||+||+|.|+.+.+ +++|+++|+|++.|+|.+.|+++|.|+
T Consensus 1188 Rl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~--e~sD~~IW~ALe~~~Lk~~v~~~p~~L 1265 (1381)
T KOG0054|consen 1188 RLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD--EYSDDEIWEALERCQLKDVVSSLPGGL 1265 (1381)
T ss_pred HhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc--ccCHHHHHHHHHHhChHHHHhhCCcCC
Confidence 99999999999999999999984 699999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEE
Q 007337 491 QTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAV 570 (607)
Q Consensus 491 ~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iiv 570 (607)
|++|.|+|.|+|-||||.+||||||+|+++||+|||||+++|++|+..||+.|++.+++||||.||||++|+.+||||+|
T Consensus 1266 d~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlV 1345 (1381)
T KOG0054|consen 1266 DSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLV 1345 (1381)
T ss_pred CceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCEEeEecChhHHhhc-CCchHHHHHHh
Q 007337 571 VSDGEIVESGTHEELLSK-GGVYTALVKRQ 599 (607)
Q Consensus 571 l~~G~Ive~G~~~eL~~~-~g~y~~l~~~~ 599 (607)
||+|+|+|.|++++|+++ ++.|+.++.+.
T Consensus 1346 ld~G~v~EfdsP~~Ll~~~~S~f~~~l~~~ 1375 (1381)
T KOG0054|consen 1346 LDAGRVVEFDSPAELLSDKDSLFSSLLKEA 1375 (1381)
T ss_pred eeCCeEeecCChHHHHhCCcchHHHHHHHH
Confidence 999999999999999976 77787666543
No 39
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.8e-77 Score=719.31 Aligned_cols=468 Identities=16% Similarity=0.241 Sum_probs=395.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 129 IVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFI 208 (607)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~ 208 (607)
++..++.+++.+++.+.+.+...+++.++++++++.|+.||+++++|+++||+++|++.+++.+...+..++..++.+++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHH
Q 007337 209 GLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVD 288 (607)
Q Consensus 209 ~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 288 (607)
.++++++++|+++++++.++++++++..++.+..++..+......+...+++.|+++|+.+||+|++|+.+.+++.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998877666655566666667777778888888888999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 289 ETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGAS 368 (607)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 368 (607)
...+..+.......+......++..+..+++.+++ +....++.|.+..++.++..+..++..+...+..+..+..+.
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~---~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~ 1172 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIA---IGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSV 1172 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554443333333333222322222211111111 111234566666667777888889999999999999999999
Q ss_pred HHHHHHhccCCCCCCCC-----------------CCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEE
Q 007337 369 RRVFQLLDRVSSMPKSG-----------------NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALV 431 (607)
Q Consensus 369 ~ri~~~l~~~~~~~~~~-----------------~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiV 431 (607)
+|+.++++.+++..... ..++.++..+.|+|+||+|+|++. .+++|+|+||+|+|||+||||
T Consensus 1173 eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271 1173 SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred HHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEE
Confidence 99999998765532110 011123445789999999999864 468999999999999999999
Q ss_pred cCCCCcc-----------------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHH
Q 007337 432 GPSGGGK-----------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKM 476 (607)
Q Consensus 432 G~sGsGK-----------------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~ 476 (607)
|+||||| |+||||||+||+|||||||.++. +++|+++++||+.
T Consensus 1252 GrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~--~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1252 GRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE--QWSDEEIWKVAEE 1329 (1490)
T ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc--CCCHHHHHHHHHH
Confidence 9999999 99999999999999999999873 5899999999999
Q ss_pred cCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEc
Q 007337 477 ANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIA 556 (607)
Q Consensus 477 a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~It 556 (607)
|+++++|.++|+|+||+|||+|.||||||||||||||||+++|+|||||||||+||++||+.|++.|++.+++||+|+||
T Consensus 1330 ~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~Ia 1409 (1490)
T TIGR01271 1330 VGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSE 1409 (1490)
T ss_pred CCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHhhcC
Q 007337 557 HRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 602 (607)
Q Consensus 557 Hrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~~~~ 602 (607)
||++++.+||+|+||++|+|+|.|+|++|+++++.|++|++.+.+.
T Consensus 1410 HRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~~~ 1455 (1490)
T TIGR01271 1410 HRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAADRL 1455 (1490)
T ss_pred cCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhChh
Confidence 9999999999999999999999999999999899999999876543
No 40
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=9.4e-76 Score=597.61 Aligned_cols=509 Identities=25% Similarity=0.332 Sum_probs=456.1
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 63 ALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLF 142 (607)
Q Consensus 63 ~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (607)
......+..++...+++.+-.++.+..|+++-++.|.+..+.. ...+..+.++.++++++..++.++|...+
T Consensus 16 a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s--------~~TLv~Ltvlal~ly~~~glLd~iR~~~l 87 (580)
T COG4618 16 AVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS--------VPTLVMLTVLALGLYAFQGLLDAIRSRVL 87 (580)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC--------cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888889999999999999999987643 34455666677788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007337 143 SSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 222 (607)
Q Consensus 143 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 222 (607)
.+++.++..++...+|....+.+..- +..|+=.+-+ +|.++++.|++..-...+.+.-.+-+++.++|.+++++++
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~---~~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~ 163 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLR---RGSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGL 163 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhh---cCCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777654 3334333333 6999999999987777788877888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 223 LALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVG 302 (607)
Q Consensus 223 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (607)
+.++.+.+++.+..+-.+..++-.++..+...+.+.....+.+|.++|++.|+.....++|.+....++..+.+..-..+
T Consensus 164 ~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~ 243 (580)
T COG4618 164 IALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNG 243 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999888888887777778888888889999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007337 303 LFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMP 382 (607)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 382 (607)
.+..++..+-.+....++.+|+|++++|++|.|.+++-..+......|+......|.++..+..+++|+.+++...+...
T Consensus 244 ~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~ 323 (580)
T COG4618 244 AFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA 323 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999998866543
Q ss_pred CCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------
Q 007337 383 KSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------ 438 (607)
Q Consensus 383 ~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------ 438 (607)
. ..+.|++++.+.++++++.=|+. ++++++|+||++++||-+||||||||||
T Consensus 324 ~---~m~LP~P~g~L~Ve~l~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~ 399 (580)
T COG4618 324 E---RMPLPAPQGALSVERLTAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGAD 399 (580)
T ss_pred C---CCCCCCCCceeeEeeeeecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchh
Confidence 2 23445667899999999976654 6799999999999999999999999999
Q ss_pred ------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
|||.|||..||+|||+|||+-+.+ +.|++++.+|++.|+.||.|..||+||||.|||+|..||||||
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~-~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGE-EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQR 478 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCCcHHHHHHhccc-cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHH
Confidence 999999999999999999977665 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL 585 (607)
|||+||||+|.||.+++||||.|+||.+.|+.+.++|.+.. +++|+|+||||++.+..+|+|+||++|++...|+-+|.
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999999999999998764 68999999999999999999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
+++
T Consensus 559 La~ 561 (580)
T COG4618 559 LAK 561 (580)
T ss_pred HHH
Confidence 864
No 41
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=4.2e-74 Score=695.00 Aligned_cols=527 Identities=18% Similarity=0.230 Sum_probs=445.6
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 60 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRA 139 (607)
Q Consensus 60 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (607)
.++.+++.+++.++..+++.++..++.+++|++++.+||++..... + ....+.++++++++.++.+++.....
T Consensus 307 l~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~-~------~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (1522)
T TIGR00957 307 LFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMA-P------DWQGYFYTGLLFVCACLQTLILHQYF 379 (1522)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c------cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555677788999999999999999999999999999998754321 1 11123345555556666677766667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007337 140 WLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK 219 (607)
Q Consensus 140 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 219 (607)
+...+++.++...++..+|+|+++++...+++.++|+++|++++|++++.+.. ..++.+|..++.+++++++++...++
T Consensus 380 ~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~ 458 (1522)
T TIGR00957 380 HICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGP 458 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 77788999999999999999999999999999999999999999999998865 56888888888888888887776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 220 LTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAK 299 (607)
Q Consensus 220 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 299 (607)
.++++++++++++++..++.+++++.+++.++..+++.+.+.|.++||++||+|+||+.+.+++.+.++++.+...+...
T Consensus 459 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~ 538 (1522)
T TIGR00957 459 SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAY 538 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888888899999999999999999999999999999999999999999999999999988877666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 300 VVGLFFGGLNAASTLSVIVVVIYGANLTI--TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
...+...... .....+.++.++.+.+. ++.++++.+++.+.++..+..|+..++..+..+.++.++++|+.++++.
T Consensus 539 ~~~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 616 (1522)
T TIGR00957 539 LHAVGTFTWV--CTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616 (1522)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5444332211 11222333345566665 3578999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCC-CCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------
Q 007337 378 VSSMPKSGNQCPLG-DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------ 438 (607)
Q Consensus 378 ~~~~~~~~~~~~~~-~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------ 438 (607)
+++.+......... ...+.|+++|++|+|++. ++++|+|+||+|++||+++|+|||||||
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 617 EELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred cccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 65432211111111 112369999999999753 4579999999999999999999999999
Q ss_pred -----eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 439 -----ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 439 -----i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
|+||||+||+|++||||||.+|.+ +++++++++++.|++.+++..+|+|++|.+||+|.+|||||||||+|||
T Consensus 696 ~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~--~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLAR 773 (1522)
T TIGR00957 696 HMKGSVAYVPQQAWIQNDSLRENILFGKA--LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773 (1522)
T ss_pred EECCEEEEEcCCccccCCcHHHHhhcCCc--cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 899999999999999999999954 6788999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHH---hcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCC
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDS---LMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGG 590 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~---~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g 590 (607)
|+|++|+|+||||||||||+++++.+.+.+.+ +.+++|+|+|||+++.++.||+|++|++|+|+++|+|+|+.++++
T Consensus 774 Al~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~ 853 (1522)
T TIGR00957 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDG 853 (1522)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcch
Confidence 99999999999999999999999999999853 467899999999999999999999999999999999999999999
Q ss_pred chHHHHHHh
Q 007337 591 VYTALVKRQ 599 (607)
Q Consensus 591 ~y~~l~~~~ 599 (607)
.|++++..+
T Consensus 854 ~~~~l~~~~ 862 (1522)
T TIGR00957 854 AFAEFLRTY 862 (1522)
T ss_pred hHHHHHHhh
Confidence 999988643
No 42
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=9.7e-74 Score=634.27 Aligned_cols=497 Identities=17% Similarity=0.158 Sum_probs=413.3
Q ss_pred hHHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 57 GFGRVLALAK-PDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 135 (607)
Q Consensus 57 ~~~~l~~~~~-~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (607)
.+++++++++ ++++.++++++++++..++.+..|++++.++|...... ...+ ..++++.++..++.
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~---------~~~~----~~~~~~~~~~~~~~ 70 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG---------QGSL----FSFGGLCLLALLFR 70 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---------chHH----HHHHHHHHHHHHHH
Confidence 4678888999 99999999999999999999999999988887421110 0011 11223344556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 136 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 215 (607)
Q Consensus 136 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 215 (607)
++..++....+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++.. +..++..++.++++++++++
T Consensus 71 ~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~ 149 (555)
T TIGR01194 71 IGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999998864 77788888888899999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHHHHHHH
Q 007337 216 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEK--NEISRYSEKVDETLKL 293 (607)
Q Consensus 216 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~ 293 (607)
++|.+++++++.+|+.+++..+..++.++...+.++..++..+.+.|.++|++++|+|+.++ ...+++.+..++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL 229 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998888888888778788888888888999999999999999999999999954 5577888888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 294 GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQ 373 (607)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~ 373 (607)
..+..+.......+..++..+...+.++++++. +.+|+|.++++..+...+..|+..+...+..++++..+++|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ 306 (555)
T TIGR01194 230 HIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLAD 306 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555444444433443333333344444442 78999999999999999999999999999999999999999999
Q ss_pred HhccCCCC---CCCC--CCC---CCCCCCCcEEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc-----
Q 007337 374 LLDRVSSM---PKSG--NQC---PLGDQDGEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK----- 438 (607)
Q Consensus 374 ~l~~~~~~---~~~~--~~~---~~~~~~~~I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK----- 438 (607)
+++.++++ .+.. ... +.....+.|+++||+|+|++.+ ++++|+|+||++++||++||||||||||
T Consensus 307 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ 386 (555)
T TIGR01194 307 FGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK 386 (555)
T ss_pred HHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHH
Confidence 98642211 0000 000 1112235799999999997531 2369999999999999999999999999
Q ss_pred -------------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCC
Q 007337 439 -------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP 487 (607)
Q Consensus 439 -------------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp 487 (607)
++||+|||++|++|+++|+ .+ +.++++++++++.++++++++.+|
T Consensus 387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~-~~~~~~~~~~~~~~~l~~~~~~lp 462 (555)
T TIGR01194 387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GE-HASLDNAQQYLQRLEIADKVKIED 462 (555)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---cc-chhHHHHHHHHHHcCCchhhcccc
Confidence 8999999999999999995 33 678999999999999999999999
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHH-h-cCCCeEEEEccCchhhhhc
Q 007337 488 EKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS-L-MKGRTVLVIAHRLSTVQSA 565 (607)
Q Consensus 488 ~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~-~-~~~~TvI~ItHrl~~l~~a 565 (607)
+||||. .+|||||||||+||||++++|+|+|||||||+||+++|+.+.+.+.+ + .+++|+|+||||+++++.|
T Consensus 463 ~g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~ 537 (555)
T TIGR01194 463 GGFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA 537 (555)
T ss_pred cccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC
Confidence 999995 88999999999999999999999999999999999999999988753 3 3689999999999999999
Q ss_pred CEEEEEeCCEEeEe
Q 007337 566 DTVAVVSDGEIVES 579 (607)
Q Consensus 566 D~Iivl~~G~Ive~ 579 (607)
|+|++|++|+|+|.
T Consensus 538 d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 538 DQIIKLAAGCIVKD 551 (555)
T ss_pred CEEEEEECCEEEEe
Confidence 99999999999874
No 43
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.4e-72 Score=675.41 Aligned_cols=554 Identities=20% Similarity=0.253 Sum_probs=461.0
Q ss_pred cccCCCCCccccCcccCCCCCccCCCCCcCcccchH---------------HHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 007337 23 PLLDHGGRRKRNDASENGNVTDLEHGDAVPAANVGF---------------GRVLALAKPDAGKLIIATVALLIASVSSI 87 (607)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 87 (607)
|++..|..+ .++..+++++++.++.+.....+ ..++.+++.+++.+++..++.++..++.+
T Consensus 22 pl~~~g~~~----~L~~~Dl~~l~~~~~~~~~~~~~~~~w~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (1490)
T TIGR01271 22 PILRKGYRQ----KLELSDIYQIPSFDSADNLSERLEREWDRELASAKKNPKLLNALRRCFFWRFVFYGILLYFGEATKA 97 (1490)
T ss_pred HHHHHHhcC----CCChhhccCCChHHhHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555333 35556777776655532211111 23445566778888888888899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 007337 88 LIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIA 167 (607)
Q Consensus 88 ~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ 167 (607)
++|++++.+|+++..... . . ....+.++++++++.++..++.....|...+++.++...+...+|+|+++++..
T Consensus 98 ~~P~ll~~li~~~~~~~~-~-~----~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~ 171 (1490)
T TIGR01271 98 VQPLLLGRIIASYDPFNA-P-E----REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSR 171 (1490)
T ss_pred HHHHHHHHHHHHhccCCC-C-c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 999999999998742211 0 0 112234555666667777788888888888899999999999999999999999
Q ss_pred hhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 168 FYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSH 247 (607)
Q Consensus 168 ~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~ 247 (607)
.+++.++|+++|++++|++++.+.+.. ++.+|..++++++++++++.+.++.++++++++++++++..++.+++.+.++
T Consensus 172 ~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~ 250 (1490)
T TIGR01271 172 VLDKISTGQLVSLLSNNLNKFDEGLAL-AHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRD 250 (1490)
T ss_pred HhcCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 5778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 248 KTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLT 327 (607)
Q Consensus 248 ~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 327 (607)
+.++..+++.+.+.|.++||++||+|+||+.+.+++.+.++++.+...+......+...+..+ ....+.++.++.|.+
T Consensus 251 ~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~--~~~~~~~~~f~~y~~ 328 (1490)
T TIGR01271 251 KRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFF--SGFFVVFLSVVPYAL 328 (1490)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988877776655443333222 223344556667766
Q ss_pred hcCCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEEC
Q 007337 328 ITGSMTPGALTSFILYSLTVGSSV-SGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAY 406 (607)
Q Consensus 328 ~~g~lt~g~l~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y 406 (607)
..+ ++++.++++++++..+..|+ ..++..+..+.++.++++||.++++.++....... .....|+++|++|.|
T Consensus 329 ~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~-----~~~~~i~~~~~~f~~ 402 (1490)
T TIGR01271 329 IKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN-----LTTTEVEMVNVTASW 402 (1490)
T ss_pred hCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc-----CCCCceEEecceEec
Confidence 654 68999999999999998887 47999999999999999999999987653221110 112359999999999
Q ss_pred CCCC-------------------------------CCcccccceEEeeCCCEEEEEcCCCCcc-----------------
Q 007337 407 PSRP-------------------------------NHMVLKGITLKLLSGSKIALVGPSGGGK----------------- 438 (607)
Q Consensus 407 ~~~~-------------------------------~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------- 438 (607)
+... .+++|+|+||+|++|++++|+||+||||
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~ 482 (1490)
T TIGR01271 403 DEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK 482 (1490)
T ss_pred CCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 6310 1358999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
++||+|+||+|++||+|||+||. .++++++.+++++|++.++++.+|+|++|.|||+|.+|||||||||+||
T Consensus 483 i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~--~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lA 560 (1490)
T TIGR01271 483 IKHSGRISFSPQTSWIMPGTIKDNIIFGL--SYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLA 560 (1490)
T ss_pred EEECCEEEEEeCCCccCCccHHHHHHhcc--ccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHH
Confidence 89999999999999999999995 4677889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHH-HHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQD-AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGV 591 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~-~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~ 591 (607)
||+|++|+||||||||||||+++++.+.+ ++.++.+++|+|+|||+++.++.||+|++|++|+|++.|+|+++.+.++.
T Consensus 561 RAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~ 640 (1490)
T TIGR01271 561 RAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPD 640 (1490)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChH
Confidence 99999999999999999999999999987 57777789999999999999999999999999999999999999988777
Q ss_pred hHHHHH
Q 007337 592 YTALVK 597 (607)
Q Consensus 592 y~~l~~ 597 (607)
|.+.+.
T Consensus 641 ~~~~~~ 646 (1490)
T TIGR01271 641 FSSLLL 646 (1490)
T ss_pred HHHHHh
Confidence 877663
No 44
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5.6e-70 Score=657.35 Aligned_cols=531 Identities=19% Similarity=0.245 Sum_probs=452.3
Q ss_pred cchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 55 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 134 (607)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (607)
+..+..++.+++.+++.++..+++.++..++.++.|++++.+++++..... .+...+.++++++++.++.+++
T Consensus 229 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~-------~~~~g~~l~~~l~~~~~~~~~~ 301 (1560)
T PTZ00243 229 PKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA-------TWGRGLGLVLTLFLTQLIQSVC 301 (1560)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------chhHHHHHHHHHHHHHHHHHHH
Confidence 455666778888999999999999999999999999999999998743211 1222344556667777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhc--ccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 135 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYD--VTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGF 212 (607)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 212 (607)
...+.+...+.+.++...+...+|+|+++++...+. +.++|+++|++++|++++.+++. .++.+|..++++++++++
T Consensus 302 ~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~l 380 (1560)
T PTZ00243 302 LHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILL 380 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999988776 46789999999999999999985 578899999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Q 007337 213 MFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLK 292 (607)
Q Consensus 213 l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~ 292 (607)
++.+.++.+++++++++++++++.++.+++.+.+++.++..+++.+.++|.++|||+||.++||+.+.+++.+.++++.+
T Consensus 381 L~~~lG~~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~ 460 (1560)
T PTZ00243 381 LSRLVGWCALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELR 460 (1560)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 293 LGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVF 372 (607)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~ 372 (607)
...+......+...+......+. .++.++.|.+..+.+|++.+++++.++..+..|+..++..+..+.++.++++||.
T Consensus 461 ~l~~~~~~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~ 538 (1560)
T PTZ00243 461 YLRDVQLARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRIS 538 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766665554444333332 3335567888899999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCC-------CC--------C--C--------------C--CC-------------------------CCCCC
Q 007337 373 QLLDRVSSMP-------KS--------G--N--------------Q--CP-------------------------LGDQD 394 (607)
Q Consensus 373 ~~l~~~~~~~-------~~--------~--~--------------~--~~-------------------------~~~~~ 394 (607)
+|++.++... +. . . + .+ .....
T Consensus 539 ~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (1560)
T PTZ00243 539 TFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPS 618 (1560)
T ss_pred HHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence 9997654110 00 0 0 0 00 00011
Q ss_pred CcEEEEeEEEECCCC-------------------------------------CCCcccccceEEeeCCCEEEEEcCCCCc
Q 007337 395 GEVELDDVWFAYPSR-------------------------------------PNHMVLKGITLKLLSGSKIALVGPSGGG 437 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~-------------------------------------~~~~vL~~isl~i~~Ge~vaiVG~sGsG 437 (607)
+.+.++|++|+|+.. .++++|+|+||+|++|++++|+|+||||
T Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsG 698 (1560)
T PTZ00243 619 PSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSG 698 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCc
Confidence 357788888875420 1245899999999999999999999999
Q ss_pred c-----------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccc
Q 007337 438 K-----------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFV 494 (607)
Q Consensus 438 K-----------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~i 494 (607)
| |+||||+||+|++||+|||.++.+ .+++++.++++.|+++++++.+|+|++|.+
T Consensus 699 KSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i 776 (1560)
T PTZ00243 699 KSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDE--EDAARLADAVRVSQLEADLAQLGGGLETEI 776 (1560)
T ss_pred HHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCCh--hhHHHHHHHHHHhhhHHHHHHhhccchHHh
Confidence 9 899999999999999999999853 567789999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHH-HHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 495 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD-AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 495 ge~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~-~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
|++|.+|||||||||+||||+|++|+|||||||||+||+++++.+.+ ++....+++|+|+|||+++.++.||+|++|++
T Consensus 777 ~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~ 856 (1560)
T PTZ00243 777 GEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGD 856 (1560)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999997766654 55556678999999999999999999999999
Q ss_pred CEEeEecChhHHhhcCCchHHHHHH
Q 007337 574 GEIVESGTHEELLSKGGVYTALVKR 598 (607)
Q Consensus 574 G~Ive~G~~~eL~~~~g~y~~l~~~ 598 (607)
|+|+++|+|+|+++. +.|.++...
T Consensus 857 G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 857 GRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred CEEEEecCHHHHHhC-hHHHHHHHh
Confidence 999999999999874 467777654
No 45
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=9.9e-68 Score=586.11 Aligned_cols=494 Identities=16% Similarity=0.150 Sum_probs=385.9
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 61 VLALAKPDAGKLIIATVALLIASVSSILI-PKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRA 139 (607)
Q Consensus 61 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (607)
++.+++++++.++..++++++..++.+.. |++.+.++|.+.... ..+..+++. .++..++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~~----------~~~~~~~~~----~~~~~~~~~~~~ 69 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTSL----------LVLPEFLGL----LLLLMAVTLGSQ 69 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----------hHHHHHHHH----HHHHHHHHHHHH
Confidence 56678888999999999999988888875 677788888653210 011111111 112234566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 007337 140 WLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWK 219 (607)
Q Consensus 140 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 219 (607)
++..+++.++..++|.++|++++++|+.+|+++++|++++|+++|++.+...+. .+..++.+++.++++++++++++|+
T Consensus 70 ~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~ 148 (547)
T PRK10522 70 LALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPK 148 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 888889999999999999999999999999999999999999999999988765 4677888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHH
Q 007337 220 LTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFA--QEKNEISRYSEKVDETLKLGLQQ 297 (607)
Q Consensus 220 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~--~e~~~~~~~~~~~~~~~~~~~~~ 297 (607)
+++++++++|+.+++..++.++.++..++.++..+++.+.+.|.++|+++++... .++.+.+++.+..++..+...+.
T Consensus 149 l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (547)
T PRK10522 149 MLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRA 228 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHH
Confidence 9999999999988888888999999999999999999999999999999996322 23456778877777776655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
.+.......+..++..+...+.++++... +..+.+.+.++..+...+..|+..+...+..++++..+.+|+.++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~ 305 (547)
T PRK10522 229 DTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALA 305 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444333322222222222222333221 112334444444444456789999999999999999999999999765
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------
Q 007337 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------- 438 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------- 438 (607)
+++..... ..+. +..+.|+++||+|+|+++ +++|+|+||+|+|||++||||||||||
T Consensus 306 ~~~~~~~~-~~~~-~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 306 PYKAEFPR-PQAF-PDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred cccccccc-cccc-CcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 43221111 1111 112479999999999843 469999999999999999999999999
Q ss_pred -----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 -----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 -----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
++||+|||++|++|++|| + + +.++++++++++.+++.+++. .|+|. .+|.+|
T Consensus 382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~L 450 (547)
T PRK10522 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKL 450 (547)
T ss_pred ECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCC
Confidence 999999999999999999 3 2 578888999999988887765 35443 258999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEeEe
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~ 579 (607)
||||||||+||||++++|+|+|||||||+||+++|+.+.+++.+.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 451 SgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999997654 47999999999999999999999999999987
Q ss_pred -cChhHHhh
Q 007337 580 -GTHEELLS 587 (607)
Q Consensus 580 -G~~~eL~~ 587 (607)
|++.+-..
T Consensus 531 ~~~~~~~~~ 539 (547)
T PRK10522 531 TGEERDAAS 539 (547)
T ss_pred cCCchhhhh
Confidence 66665443
No 46
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.4e-66 Score=580.70 Aligned_cols=505 Identities=17% Similarity=0.153 Sum_probs=423.6
Q ss_pred hHHHHHHhhcchhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 007337 57 GFGRVLALAKPDAG-----KLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVG 131 (607)
Q Consensus 57 ~~~~l~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (607)
.+.+++++++|+++ .+++.+++.++.+++.+..|++.+.++|.+..... ......+..+++.++++.++.
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~-----~~f~~~l~~~~l~~~~~~~~~ 152 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP-----RNFAWILFKWFLIAPPASFIN 152 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 46667888888887 56678888888999999999999999998764321 001111233444555666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 132 SVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLG 211 (607)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 211 (607)
.+..++..++...+..++...++...|++....+..+|++ ++|++.+|+++|++.+.+.+...+..++..++.++++++
T Consensus 153 ~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~ 231 (659)
T TIGR00954 153 SAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSF 231 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888899999999999888888888886 789999999999999999999999999999999998888
Q ss_pred HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHH
Q 007337 212 FMFA-TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDET 290 (607)
Q Consensus 212 ~l~~-~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 290 (607)
.++. ++|.+++++++.+|+.+++.+++.++..+..++.++..++..+...|.++|+++||+|+.|+.+.+++.+..++.
T Consensus 232 ~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l 311 (659)
T TIGR00954 232 KLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRL 311 (659)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8886 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CCcCHHHHHH-HHHH---HHHHHHHHHHHHHHHH
Q 007337 291 LKLGLQQAKVVGLFFGGLNAASTL--SVIVVVIYGANLTI-T----GSMTPGALTS-FILY---SLTVGSSVSGLSSLYT 359 (607)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~-~----g~lt~g~l~~-~~~~---~~~~~~~l~~l~~~~~ 359 (607)
.+...+..+..+.+..+..++... ..++.++.|...+. . |.+|+|.+++ ++.+ +..+..|+..+...+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~ 391 (659)
T TIGR00954 312 VEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGR 391 (659)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888888877776543 23333333443332 2 7899988766 4444 5667899999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCC-------CCC---C-------------CCCCCCCCcEEEEeEEEECCCCCCCcccc
Q 007337 360 VAMKAAGASRRVFQLLDRVSSMPK-------SGN---Q-------------CPLGDQDGEVELDDVWFAYPSRPNHMVLK 416 (607)
Q Consensus 360 ~~~~~~~~~~ri~~~l~~~~~~~~-------~~~---~-------------~~~~~~~~~I~~~~vsf~y~~~~~~~vL~ 416 (607)
.++++.++.+|+.++++.+++... ... . .......+.|+++||+|+|+++ +++|+
T Consensus 392 ~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~ 469 (659)
T TIGR00954 392 DMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIE 469 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--Ceeee
Confidence 999999999999999975432110 000 0 0001123469999999999743 36999
Q ss_pred cceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCcccccHHHHhhcCCC------CCC
Q 007337 417 GITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFNCSIEENIAYGCD------GKA 465 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~gTIreNI~~g~~------~~~ 465 (607)
|+||+|++||+++|+||||||| ++||||+|++|++|++|||.++.. .+.
T Consensus 470 ~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~ 549 (659)
T TIGR00954 470 SLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGL 549 (659)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCC
Confidence 9999999999999999999999 799999999999999999998741 145
Q ss_pred CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 007337 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS 545 (607)
Q Consensus 466 ~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~ 545 (607)
++++++++++.+++++++.. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.+.+.+++
T Consensus 550 ~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 550 SDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred CHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 78899999999999999987 999999986 5779999999999999999999999999999999999999999999987
Q ss_pred hcCCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 546 LMKGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 546 ~~~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
. ++|+|+||||++.++.||+|++|+.
T Consensus 628 ~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 628 F--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred c--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 4 8999999999999999999999974
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.6e-48 Score=390.62 Aligned_cols=202 Identities=22% Similarity=0.429 Sum_probs=189.6
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------e
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------I 439 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i 439 (607)
+.|+++|++++|++. ..++|+|+||+|++||+++|+|+||||| +
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhE
Confidence 369999999999753 3569999999999999999999999999 8
Q ss_pred EEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 440 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 440 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
+||||+|++|++|++||+.+.. ..++++++++++.+++.+++..+|+|++|.++|+|.+||||||||++||||++++|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999997553 35788999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHh
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~ 599 (607)
+|+||||||++||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+|++.|++++|++.++.|++++...
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPS 237 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhc
Confidence 99999999999999999999999998878899999999999999999999999999999999999999888888888643
No 48
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2e-43 Score=376.90 Aligned_cols=443 Identities=20% Similarity=0.228 Sum_probs=353.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCch------HHHHHHHHhHHHHHHHHHHHH
Q 007337 123 SIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTG------ELLSRLSEDTQIIKNAATTNL 196 (607)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G------~i~~r~~~d~~~i~~~~~~~~ 196 (607)
.+..+..+.......+.|+...+..+.+..+...+.++.+.....|+.. ..| ..=+|+..|+..+.+.-....
T Consensus 91 ~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~-~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~ 169 (604)
T COG4178 91 VFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA-QAGGIGLIDNPDQRIQEDIRNFTETTLDLS 169 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH-hcccccCCCChHHhHHHHHHHHHhhHHHHH
Confidence 3333344444455568888888888999999999999998888444432 232 334699999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 197 SEALRNLSTAFIGLGFMFATSWKL---------------TLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAE 261 (607)
Q Consensus 197 ~~~~~~~~~~i~~~~~l~~~~~~l---------------~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (607)
..++.++++.+...++++..+..+ ..++++-+++-.++..+++|...+++.+..+..+.....+.
T Consensus 170 ~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lv 249 (604)
T COG4178 170 FGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLV 249 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 788888888888888887444433 23333334444455567788888888888888888888888
Q ss_pred HHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHH
Q 007337 262 ESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFI 341 (607)
Q Consensus 262 e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~ 341 (607)
-.-++.+.|-.|+-|+.+.++..+......+...+.......+..+....+.++.++-+..++.....|+++.|.++...
T Consensus 250 rv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~ 329 (604)
T COG4178 250 RVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAV 329 (604)
T ss_pred HHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHH
Confidence 89999999999999999998888888777766555555555555555555666666667778888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCCCCCCC--CCCCCCCcEEEEeEEEECCCCCCCc
Q 007337 342 LYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVS------SMPKSGNQC--PLGDQDGEVELDDVWFAYPSRPNHM 413 (607)
Q Consensus 342 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~------~~~~~~~~~--~~~~~~~~I~~~~vsf~y~~~~~~~ 413 (607)
..+..+...+..+...+..+..-.+.+.|+.++-+..+ +.+...... .....+..|+++|++..-|++ ..
T Consensus 330 ~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ 407 (604)
T COG4178 330 GAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QT 407 (604)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--Ce
Confidence 99999999999999999999999999999999874322 111110000 000014679999999998865 37
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCcccccHHHHhhcCCCC-CCCH
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFNCSIEENIAYGCDG-KASS 467 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~-~~~~ 467 (607)
.++++||.|++||.+-|.|+||||| +-|+||.|++-.||+||-|+|-++. +++|
T Consensus 408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d 487 (604)
T COG4178 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD 487 (604)
T ss_pred eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCCh
Confidence 8999999999999999999999999 7899999999999999999998753 3899
Q ss_pred HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 007337 468 ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 547 (607)
Q Consensus 468 ~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~ 547 (607)
+++.+++.+|+|.+++++|.+-.+ -..-||+|||||||+||.++++|++++|||+|||||+++|..+.+.+++.+
T Consensus 488 ~~l~~vL~~vgL~~L~~rl~~~~~-----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l 562 (604)
T COG4178 488 AELVAVLHKVGLGDLAERLDEEDR-----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL 562 (604)
T ss_pred HHHHHHHHHcCcHHHHHHHhccCc-----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC
Confidence 999999999999999998753332 567899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 548 KGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 548 ~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
++.|+|-|+||.......++.+-+++
T Consensus 563 p~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 563 PDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred CCCEEEEeccchhhHHHHhhheeecc
Confidence 99999999999999888888776654
No 49
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=379.49 Aligned_cols=190 Identities=32% Similarity=0.511 Sum_probs=168.2
Q ss_pred CCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------
Q 007337 392 DQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------- 438 (607)
Q Consensus 392 ~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------- 438 (607)
+..+.|+++|++|+|++. ..++|+|+||+|++||++||+|+|||||
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 445689999999999753 3579999999999999999999999999
Q ss_pred ----------eEEEccCCCcccccHHHHhhcCCC-CCCCHHH-----HHHHHHHcCchHHHHhCCccccccccCCCCCCC
Q 007337 439 ----------ISIVSQEPVLFNCSIEENIAYGCD-GKASSAD-----IENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 439 ----------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~~~~~-----i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
++||||+|++|++|++|||.|+.. ...++++ +.++++.|++.+ ++++.++++|.+||
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~LS 227 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNALS 227 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccCC
Confidence 789999999999999999998631 1233333 566777777644 45688999999999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecC
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGT 581 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~ 581 (607)
||||||++||||++++|+|||||||||+||+++.+.+.++|+++.+++|+|+|||+++++.. ||+|+||++|+|+|.|+
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999999889999999999999987 99999999999999999
Q ss_pred hhHHhhcC
Q 007337 582 HEELLSKG 589 (607)
Q Consensus 582 ~~eL~~~~ 589 (607)
++++....
T Consensus 308 ~~~l~~~~ 315 (329)
T PRK14257 308 TKTIFIHP 315 (329)
T ss_pred HHHHhcCC
Confidence 99998643
No 50
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=325.30 Aligned_cols=180 Identities=36% Similarity=0.573 Sum_probs=158.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++.+|.+ ..+|+||||+|++||.++|+|||||||
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999974 469999999999999999999999999
Q ss_pred eEEEccCCCcc-cccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 ISIVSQEPVLF-NCSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 i~~V~Q~~~Lf-~gTIreNI~~g~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
+|+|+|+..|| .-|+.|||+++.- ...+. ++-.+.+++++|.|-....| .+|||||+||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 78999999999 6899999999721 01222 33456788888888877776 6799999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhcC
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
||||.-+|+++++|||||||||+.-..|.+.++++. .+.|.|+|||.+.+.++ ||||+.||+|+|+|+|+++++..+.
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999998875 47899999999999876 9999999999999999999998763
No 51
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=3.5e-42 Score=341.79 Aligned_cols=199 Identities=51% Similarity=0.801 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++|++++|+.. ..++|+|+||++++||+++|+|+||||| ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999753 3569999999999999999999999999 79
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 441 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 441 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
|++|++++|+.|++|||.++.+ ..+.+++.++++..++.+.++.+|.|+++.......+||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPR 158 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999998754 455667888889999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHH
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 597 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~ 597 (607)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|++++++++.+.|+.++.
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 159 ILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 99999999999999999999999998778999999999999999999999999999999999999999999988775
No 52
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-43 Score=320.84 Aligned_cols=184 Identities=35% Similarity=0.538 Sum_probs=165.3
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..++++|+++.|.+ ..+|+|||++|++++.+|++|||||||
T Consensus 6 ~~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 35899999999974 469999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCC-C----CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCD-G----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~-~----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
+|.|+|.|--|+.||+||+.||-. . ..-|+.++++++.|+|+|.+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 999999999999999999999831 0 1124558899999999998864 24567888999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||+||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||.+... +-+|+...+-.|+++|.|+-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 99999999999999999999999999999999999999999999999999999865 66999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
..+
T Consensus 236 F~~ 238 (253)
T COG1117 236 FTN 238 (253)
T ss_pred hcC
Confidence 754
No 53
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.9e-41 Score=338.84 Aligned_cols=204 Identities=35% Similarity=0.581 Sum_probs=187.0
Q ss_pred CCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------
Q 007337 393 QDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438 (607)
Q Consensus 393 ~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------- 438 (607)
..+.|+++|++++|++. +.++|+|+||+|++||+++|+|+|||||
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 45689999999999753 3469999999999999999999999999
Q ss_pred --eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 439 --ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 439 --i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
++||+|+|++|++|++||+.+.. ...+++++++++.+++.+.+..+|.|++|.+++.+.+||||||||++||||++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 89999999999999999998753 23566788999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc-CCchHHH
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTAL 595 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~~l 595 (607)
++|+++||||||++||++++..+.+.++++.+++|+|++||+++.+..||+|++|++|+|++.|+++++.+. ++.|+++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 999999999999999999999999999987778999999999999999999999999999999999999875 5678887
Q ss_pred HHHh
Q 007337 596 VKRQ 599 (607)
Q Consensus 596 ~~~~ 599 (607)
+..+
T Consensus 253 ~~~~ 256 (257)
T cd03288 253 VRTD 256 (257)
T ss_pred Hhcc
Confidence 7543
No 54
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-42 Score=333.78 Aligned_cols=190 Identities=33% Similarity=0.541 Sum_probs=162.1
Q ss_pred EEEEeEEEECCCC--CCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 397 VELDDVWFAYPSR--PNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 397 I~~~~vsf~y~~~--~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
|++++|++.|+.. ....+|+||||+|++||+.+|+|+||+||
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999862 12468999999999999999999999999
Q ss_pred ---eEEEccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 ---ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 ---i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
|++++|++-|++ -|+.|||.|.-. ...+ ++++.+.|+.++|.|....-| .+||||||||+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhHH
Confidence 999999999997 999999998521 0122 345777888888887766554 78999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
+|||||..+|+||+.|||||||||+|.+.|.+.|+++- -+-|+++|||.++.+++ ||||.||++|+|+|+|+-.|+.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 99999999999999999999999999999999997653 37899999999999975 9999999999999999999987
Q ss_pred hcC--CchHHHHH
Q 007337 587 SKG--GVYTALVK 597 (607)
Q Consensus 587 ~~~--g~y~~l~~ 597 (607)
.+. ..-++++.
T Consensus 231 ~~Pk~~~t~~fi~ 243 (339)
T COG1135 231 ANPKHAITQEFIG 243 (339)
T ss_pred cCcchHHHHHHHH
Confidence 643 33344443
No 55
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-40 Score=330.74 Aligned_cols=199 Identities=55% Similarity=0.856 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++|++++|++. .++|+|+||+|++|++++|+|++|||| ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999642 369999999999999999999999999 78
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 441 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 441 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
|++|++++|++|++||+.++.+ ..+++++.++++.+++.+.+..+|.|++|.+..+..+||||||||++|||||+++|+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999864 456677888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHH
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKR 598 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~ 598 (607)
++||||||++||+++...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+..+.|+.++.+
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHhc
Confidence 999999999999999999999999887788999999999999999999999999999999999998887778776653
No 56
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=330.52 Aligned_cols=197 Identities=59% Similarity=0.936 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++|++++|++. ..++++|+||++++||+++|+|+||||| ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999743 2369999999999999999999999999 89
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 441 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 441 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
|++|++.+|+.|++||+.++.+ ..+.+++.+.++.+++.++++.+|.|+++.++.....||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 158 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPP 158 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999864 456677888899999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHH
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 595 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l 595 (607)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.+++.+..+.|+.+
T Consensus 159 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 159 ILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 999999999999999999999999987889999999999999999999999999999999999998887777654
No 57
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.7e-38 Score=309.21 Aligned_cols=486 Identities=18% Similarity=0.190 Sum_probs=345.8
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 61 VLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAW 140 (607)
Q Consensus 61 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (607)
+.-+.+++++.++....+++++++.....-.++ -+......... + ....+++.+..++ .+.+.+.+.
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~i---n~al~e~~~~~------~-~~l~~f~~llllf---~~ss~is~l 70 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFI---NQALIETADTS------L-LVLPEFLGLLLLF---MVSSLISQL 70 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhcccc------e-eeHHHHHHHHHHH---HHHHHHHHH
Confidence 445678888888888777777766554333222 22222111100 0 1112222222222 233445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007337 141 LFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL 220 (607)
Q Consensus 141 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 220 (607)
....+++....++|.++.+|++..|+.-+++-+++.++.++++|+..|. +-...++.+.++...++.+++++++.|+++
T Consensus 71 g~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~m 149 (546)
T COG4615 71 GLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKM 149 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6667889999999999999999999999999999999999999999997 555667778899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH--HHHHHHHHHHHHHHHHHHHHHH
Q 007337 221 TLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQE--KNEISRYSEKVDETLKLGLQQA 298 (607)
Q Consensus 221 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e--~~~~~~~~~~~~~~~~~~~~~~ 298 (607)
.+++++.+.+..........+..+..+..++..++..+.....+.|.+.++...-- ..+.+.+....+...+......
T Consensus 150 f~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n 229 (546)
T COG4615 150 FLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRAN 229 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhh
Confidence 99999988888888888888888889999999999999999999999999987532 2233344333333322111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007337 299 KVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRV 378 (607)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~ 378 (607)
..........++.....+.+++|+...... -+.....++.+....+..|+.++...++.+.++.++.++|.++-..|
T Consensus 230 ~f~~la~~~~ni~l~~lIGlvf~lal~~~w---~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~ 306 (546)
T COG4615 230 TFHLLAVNWSNIMLLGLIGLVFWLALSLGW---ASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAP 306 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Confidence 111011111122222222223333222111 12223344555666788999999999999999999999999876544
Q ss_pred CCCC-CCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------
Q 007337 379 SSMP-KSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------- 438 (607)
Q Consensus 379 ~~~~-~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------- 438 (607)
+... ...+..|. -..||++||.|+|++. ..-+..||++|++||.|-|+|.+||||
T Consensus 307 ~~a~~~~~q~~p~---~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ 381 (546)
T COG4615 307 YKADFPRPQAFPD---WKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (546)
T ss_pred ccccCCCCCcCCc---ccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee
Confidence 3221 11222222 2469999999999864 367889999999999999999999999
Q ss_pred -----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 -----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 -----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
++-|+-|-|||+.++ |.+..++++.+.+-++.-.+.... ++.+|--| -..|
T Consensus 382 ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~kL 449 (546)
T COG4615 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-SLNDGRFS-----NLKL 449 (546)
T ss_pred ECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-cccCCccc-----cccc
Confidence 677888888888643 433236777777766665554432 22223222 2579
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEeEe
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~ 579 (607)
|-|||.|+|+--|++-+.||++|||=-+-=||.=.+.+.+.+.-.+ .|||++.|||+-.+..+|||++.|++|+++|.
T Consensus 450 StGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred ccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 9999999999999999999999999999999999999988875443 48999999999999999999999999999986
Q ss_pred c
Q 007337 580 G 580 (607)
Q Consensus 580 G 580 (607)
-
T Consensus 530 t 530 (546)
T COG4615 530 T 530 (546)
T ss_pred c
Confidence 4
No 58
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-40 Score=326.74 Aligned_cols=191 Identities=49% Similarity=0.819 Sum_probs=177.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.|+++|++++|+. ..++++|+||++++||+++|+||||||| +
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999963 2369999999999999999999999999 8
Q ss_pred EEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 440 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 440 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
+|++|++++|++|++||+.++.+ ....+++.++++.+++.++++.+|.|+++.++.....||||||||++|||||+++|
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999864 45667888899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+.+++.++.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 9999999999999999999999999987789999999999999999999999999999999998887653
No 59
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.4e-40 Score=324.11 Aligned_cols=184 Identities=37% Similarity=0.597 Sum_probs=172.5
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
+.|+++|++++|+.. +.++|+|+||++++||.++|+|+|||||
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999753 3479999999999999999999999999
Q ss_pred eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC
Q 007337 439 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 518 (607)
Q Consensus 439 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~ 518 (607)
++|++|++.+|++|++|||.+.. ..+.+++.++++..++.+++..+|.|++|.+++...+||||||||++||||++++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 89999999999999999998774 3567889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecC
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 581 (607)
|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+
T Consensus 158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 158 SKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 999999999999999999999999998877899999999999999999999999999998875
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=4.2e-40 Score=327.11 Aligned_cols=199 Identities=61% Similarity=0.967 Sum_probs=181.7
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++|++++|++..+.++|+|+||++++||.++|+|+||||| ++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999975323469999999999999999999999999 89
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 441 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 441 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
|++|++.+|+.|++||+.++.+ ....+++.+.++..++.+++..+|.|+++.+.....+||||||||++||||++.+|+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 445667788889999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHH
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 596 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 596 (607)
++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.+++......++.++
T Consensus 160 llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 160 ILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 9999999999999999999999998767899999999999999999999999999999999999887766666554
No 61
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.5e-39 Score=325.69 Aligned_cols=218 Identities=28% Similarity=0.429 Sum_probs=185.6
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------
Q 007337 369 RRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------- 438 (607)
Q Consensus 369 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------- 438 (607)
+.+.+.+..++++.+. .+.+.....|+++|+++.+ .++|+|+||+|++||+++|+|+|||||
T Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENND---RKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccc---cccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3566666665543221 1222334579999999962 359999999999999999999999999
Q ss_pred -------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 -------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 -------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++|++|++++|++|++||+.++. ...+.++.++++.+++.+.+..+|.+++|.+++.+..|||||
T Consensus 87 ~~p~~G~I~i~g~i~yv~q~~~l~~~tv~enl~~~~--~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq 164 (282)
T cd03291 87 LEPSEGKIKHSGRISFSSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQ 164 (282)
T ss_pred CCCCCcEEEECCEEEEEeCcccccccCHHHHhhccc--ccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHH
Confidence 88999999999999999999873 234556778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHH-HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhH
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAM-DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l-~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~e 584 (607)
|||++||||++++|++|||||||++||+.+...+.+.+ +.+.+++|+|+|||+++.++.||+|++|++|++++.|++++
T Consensus 165 ~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 165 RARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999888754 55556899999999999999999999999999999999999
Q ss_pred HhhcCCchHHHH
Q 007337 585 LLSKGGVYTALV 596 (607)
Q Consensus 585 L~~~~g~y~~l~ 596 (607)
+.+....|...+
T Consensus 245 ~~~~~~~~~~~~ 256 (282)
T cd03291 245 LQSLRPDFSSKL 256 (282)
T ss_pred HHhcchHHHHHH
Confidence 987655665444
No 62
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.1e-39 Score=318.30 Aligned_cols=183 Identities=39% Similarity=0.662 Sum_probs=169.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.|+++|++++|+.. ..++|+|+||+|++|++++|+||||||| +
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999743 2469999999999999999999999999 7
Q ss_pred EEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 440 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 440 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
+|++|++++|..|++||+.++.+ ..+++++.++++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 89999999999999999998753 34566788999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEec
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 580 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G 580 (607)
+++||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987668999999999999999999999999998764
No 63
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-40 Score=310.65 Aligned_cols=178 Identities=34% Similarity=0.553 Sum_probs=156.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+|+|||+.|.+ ..+++|+||+|++||.+.++||||||| ||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 799999999973 479999999999999999999999999 99
Q ss_pred EEccCCCcc-cccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchH--HHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 441 IVSQEPVLF-NCSIEENIAYGCD-GKAS----SADIENAAKMANAHD--FISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 441 ~V~Q~~~Lf-~gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~--~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
||-|..-|| +-||.|||.+-.. ...+ ++++.+.++..+|++ +....| ..|||||+||+.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHHH
Confidence 999999999 6899999987410 0123 455777888888863 666655 56999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCch-hhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~-~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||..+|+|++||||+|||||-+...+++-+.++-+ ++|+|+|||+.+ .++-+|||.+|++|+|++.|+++|++++
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999876533 799999999997 5788999999999999999999999985
No 64
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=2.4e-39 Score=289.56 Aligned_cols=178 Identities=37% Similarity=0.568 Sum_probs=157.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|.+++|.|+|.+.+ -..+++|++||+|||+||||||| ++.+
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 56889999997531 35789999999999999999999 8999
Q ss_pred ccCCCcc-cccHHHHhhcCCCCC-----CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 443 SQEPVLF-NCSIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 443 ~Q~~~Lf-~gTIreNI~~g~~~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+||.-|| .-||++||.+|..+. .+.++++.++..+|+.++...|| ..||||||||+||||+|+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHHh
Confidence 9999999 579999999996422 24567999999999999999998 468999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhcCC
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKGG 590 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~g 590 (607)
|+.|||+||||+|||||.-.+.....+.++. ++.|+++|||+++.+ +.+|+++++++|||+++|+-+++.+..+
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 9999999999999999998888888776665 467999999999876 5699999999999999999999987543
No 65
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-39 Score=308.42 Aligned_cols=167 Identities=37% Similarity=0.555 Sum_probs=148.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------eEEEcc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------ISIVSQ 444 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------i~~V~Q 444 (607)
.+++++|+.+|+. ..+|+|+||+|++||+|+|+||||||| ++||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 4899999999975 479999999999999999999999999 899999
Q ss_pred CCCccc-ccHHHHhhcCCCCC-----CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC
Q 007337 445 EPVLFN-CSIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 518 (607)
Q Consensus 445 ~~~Lf~-gTIreNI~~g~~~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~ 518 (607)
++.||+ -|++||+.++-... -.+++..++++.++|.+|-...| ..||||||||+||||||+.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHHHHhcC
Confidence 999996 89999999985311 12456889999999999877776 67999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchh-hhhcCEEEEEeC--CEE
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLST-VQSADTVAVVSD--GEI 576 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~-l~~aD~Iivl~~--G~I 576 (607)
|+||+||||+||||+.|....++-+.++.+ ++|+++|||+++. +.-+|||+||.+ |+|
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999999999999988764 5999999999975 567999999999 555
No 66
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.1e-39 Score=332.72 Aligned_cols=190 Identities=32% Similarity=0.514 Sum_probs=160.7
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
|+++|++++|+... ..++|+|+||+|++||+++|+|+|||||
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996421 2469999999999999999999999999
Q ss_pred --eEEEccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 439 --ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 --i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
|+||+|++.+|+ .|++||+.++.. ...+ ++++.++++.+++.+..... ...||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~-----------~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY-----------PSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHH
Confidence 899999999995 799999987521 0122 34567788888887765443 3689999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.++ .||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999998754 789999999999985 499999999999999999999976
Q ss_pred c--CCchHHHHH
Q 007337 588 K--GGVYTALVK 597 (607)
Q Consensus 588 ~--~g~y~~l~~ 597 (607)
. ...++.++.
T Consensus 231 ~p~~~~~~~~~~ 242 (343)
T TIGR02314 231 HPKTPLAQKFIR 242 (343)
T ss_pred CCCcHHHHHHHh
Confidence 4 233444443
No 67
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=8e-39 Score=310.21 Aligned_cols=177 Identities=34% Similarity=0.565 Sum_probs=160.2
Q ss_pred EEEEeEEEECCCCCC--CcccccceEEeeCCCEEEEEcCCCCcc-----------------------eEEEccCCCcccc
Q 007337 397 VELDDVWFAYPSRPN--HMVLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFNC 451 (607)
Q Consensus 397 I~~~~vsf~y~~~~~--~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~~~Lf~g 451 (607)
|+++||+++|++..+ +++|+|+||+|++||+++|+|+||||| ++|++|+|.+|++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~ 80 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNG 80 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccC
Confidence 578999999975311 369999999999999999999999999 7999999999999
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 007337 452 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531 (607)
Q Consensus 452 TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL 531 (607)
|++|||.++. ..++++++++++.+++.+++..+|.|++|.+.+....||||||||++||||++++|+++||||||++|
T Consensus 81 t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~L 158 (204)
T cd03250 81 TIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAV 158 (204)
T ss_pred cHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 9999999974 35566788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCE
Q 007337 532 DAESEYLVQDA-MDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGE 575 (607)
Q Consensus 532 D~~te~~i~~~-l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~ 575 (607)
|+++.+.+.+. +++.. +++|+|++||+++.++.||+|++|++|+
T Consensus 159 D~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 159 DAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99998888774 55543 3689999999999999999999999985
No 68
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.6e-39 Score=302.24 Aligned_cols=188 Identities=34% Similarity=0.487 Sum_probs=155.7
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
.++++|+++.|+.+. -.++|+||||+|.+||+++|||+|||||
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999998641 0149999999999999999999999999
Q ss_pred -eEEEccCCCc---ccccHHHHhh----cCCCCCCCHHHHHHHHHHcCchHH-HHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 -ISIVSQEPVL---FNCSIEENIA----YGCDGKASSADIENAAKMANAHDF-ISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 -i~~V~Q~~~L---f~gTIreNI~----~g~~~~~~~~~i~~al~~a~l~~~-i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
+-+|+|||+- -.-||++-|. ...- +-.+.+++++++.+++.+. ....| ..|||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~-~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRi 150 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGL-SKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRI 150 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCc-cHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHH
Confidence 7899999973 2345555553 2111 2235568999999999754 44444 56999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCC--eEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR--TVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~--TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
||||||.-+|++|||||||||||....+.|.+.+.++.+++ |.|+|||+++.+.+ ||||+||++|+|+|.++-+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999999999999999999999999998887655 99999999999875 9999999999999999999998
Q ss_pred hc-CCchHHH
Q 007337 587 SK-GGVYTAL 595 (607)
Q Consensus 587 ~~-~g~y~~l 595 (607)
.. .-.|.+.
T Consensus 231 ~~~~h~ytr~ 240 (252)
T COG1124 231 SHPSHPYTRE 240 (252)
T ss_pred cCCccHHHHH
Confidence 76 4455443
No 69
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-38 Score=302.96 Aligned_cols=171 Identities=35% Similarity=0.495 Sum_probs=145.3
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
++++||+..|.... ..++|+++||+|++||.|||+|||||||
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999886432 2468999999999999999999999999
Q ss_pred ---eEEEccCCCcc-cccHHHHhhc----CCCCC-CCHHHHHHHHHHcCchHHHH-hCCccccccccCCCCCCChhHHHH
Q 007337 439 ---ISIVSQEPVLF-NCSIEENIAY----GCDGK-ASSADIENAAKMANAHDFIS-NFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ---i~~V~Q~~~Lf-~gTIreNI~~----g~~~~-~~~~~i~~al~~a~l~~~i~-~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
||||+|+..|+ +-|++|||.+ ..... ..++++.+.++..++.+... .. ...||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~-----------p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKK-----------PSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCC-----------chhcCHHHHHH
Confidence 99999999886 6799999985 22101 12445667777778776554 33 36799999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEeE
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 578 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive 578 (607)
+||||||+.+|+|++.||||+|||+++.+.|.+.++++. .++|+|+|||+......|||++.|++|++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999874 3789999999999999999999999999543
No 70
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=9.8e-36 Score=308.56 Aligned_cols=444 Identities=17% Similarity=0.179 Sum_probs=312.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHH---HHHHHHhHHHHHHHHHHHHHHHHHH
Q 007337 126 LIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGEL---LSRLSEDTQIIKNAATTNLSEALRN 202 (607)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i---~~r~~~d~~~i~~~~~~~~~~~~~~ 202 (607)
++......+..+..|.......+.+.++..-++++-++--.-|.-++....| =+|++.|+++.-..+......++.+
T Consensus 130 ~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a 209 (659)
T KOG0060|consen 130 LLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKA 209 (659)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhcc
Confidence 3333334444555555555566666777766666665543322211111222 2489999999888877777777777
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHH
Q 007337 203 LSTAFIGLGFMFATSWKLTLLALVVVPA-ISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEIS 281 (607)
Q Consensus 203 ~~~~i~~~~~l~~~~~~l~li~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 281 (607)
++.++.+..-++...++++.+.+..-.+ -.++.+.+.+.+.+...+..+...+..-.-.+...|.+.|-.|+.+..+..
T Consensus 210 ~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~ 289 (659)
T KOG0060|consen 210 PFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQ 289 (659)
T ss_pred ceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHH
Confidence 7777777777777766666665554433 456667777777777777777777766666788899999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---hcCCcCHHHHHHHHH----HHHHHHHHHHH
Q 007337 282 RYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIY-GANLT---ITGSMTPGALTSFIL----YSLTVGSSVSG 353 (607)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~---~~g~lt~g~l~~~~~----~~~~~~~~l~~ 353 (607)
......+...+.......+......+.+++-.+..++...+ +.... .-+.++...+...+. ++..+...+..
T Consensus 290 ~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~ 369 (659)
T KOG0060|consen 290 RTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGR 369 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 66666665555444433333333333333333322221111 11111 234567776655442 33445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC----------------CC-----CCCCCCCCCCCCcEEEEeEEEECCCCCCC
Q 007337 354 LSSLYTVAMKAAGASRRVFQLLDRVSSM----------------PK-----SGNQCPLGDQDGEVELDDVWFAYPSRPNH 412 (607)
Q Consensus 354 l~~~~~~~~~~~~~~~ri~~~l~~~~~~----------------~~-----~~~~~~~~~~~~~I~~~~vsf~y~~~~~~ 412 (607)
+......+.+...-..||.++.+...+. .. .+......+.+..|+|++|+++=|++ ..
T Consensus 370 l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~-g~ 448 (659)
T KOG0060|consen 370 LVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN-GD 448 (659)
T ss_pred HHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC-Cc
Confidence 6666677777777888888776521110 00 00001112234679999999998875 45
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc----------------------------eEEEccCCCcccccHHHHhhcCC---
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK----------------------------ISIVSQEPVLFNCSIEENIAYGC--- 461 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------i~~V~Q~~~Lf~gTIreNI~~g~--- 461 (607)
.+.+|+||+|+.|+.+.|+||||||| +-||||.|+.-.||+||.+.|-.
T Consensus 449 ~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~~~ 528 (659)
T KOG0060|consen 449 LLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLKAE 528 (659)
T ss_pred eeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCccc
Confidence 67788999999999999999999999 77999999999999999999851
Q ss_pred ---CCCCCHHHHHHHHHHcCchHHHHhCCcccccccc-CCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHH
Q 007337 462 ---DGKASSADIENAAKMANAHDFISNFPEKYQTFVG-ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEY 537 (607)
Q Consensus 462 ---~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ig-e~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~ 537 (607)
.+.++|+++.+.++.+++.+.++. -+|+|+++- |-...||+||+||+|.||-+|++|++-+|||+|||||.+.|.
T Consensus 529 ~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~ 607 (659)
T KOG0060|consen 529 DMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEG 607 (659)
T ss_pred cccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHH
Confidence 124689999999999999876554 579998776 568899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 538 LVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 538 ~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
.+.+.+++. +.|.|-|.||-+.-+.-|.++-|+.
T Consensus 608 ~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 608 ALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999885 8999999999999999999999986
No 71
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.3e-38 Score=310.96 Aligned_cols=182 Identities=57% Similarity=0.842 Sum_probs=165.4
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
.+.|+++|++++|++....++|+|+||+|++||+++|+|+|||||
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 457999999999975322469999999999999999999999999
Q ss_pred -eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 -ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 -i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
++|++|++.+|+.|++||+.++.. ..+..++.+..+...+.++++.+|.|+++.+.+...+||||||||++||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~ 167 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 899999999999999999998753 344455666677788899999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 576 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~I 576 (607)
+|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 168 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 168 NPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999988777899999999999999999999999974
No 72
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-38 Score=321.10 Aligned_cols=179 Identities=37% Similarity=0.590 Sum_probs=159.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++||+.+|++. .+++|+||+|+.||.++++||||||| ||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999743 29999999999999999999999999 999
Q ss_pred EccCCCcccc-cHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFNC-SIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|+.-||+- ||+|||.|+-. ++-.++++.++++..++.+.++..| ..||||||||+||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHHH
Confidence 9999999965 99999999842 1123677999999999999988876 67999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
.++|++++||||+|+||++........|+++.+ +.|+|+|||+...+ .-+|||+||++|+|.+.|++.|+.++
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 999999999999999999998888888877543 57999999998655 56999999999999999999999875
No 73
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-38 Score=315.06 Aligned_cols=182 Identities=35% Similarity=0.533 Sum_probs=154.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++|+|+||+|++||+++|+|||||||
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 369999999999999999999999999
Q ss_pred -eEEEccCCCcccc-cHHHHhhcCCCC--CCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 439 -ISIVSQEPVLFNC-SIEENIAYGCDG--KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 -i~~V~Q~~~Lf~g-TIreNI~~g~~~--~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
++||+|++.+|+. |++||+.++... ..+. +++.++++..++.++... ...+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDL-----------YPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHHH
Confidence 6899999999986 999999875210 1222 345667777776554433 23579999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
||||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 789999999999876 499999999999999999999876
Q ss_pred cCCch
Q 007337 588 KGGVY 592 (607)
Q Consensus 588 ~~g~y 592 (607)
....|
T Consensus 227 ~~~~~ 231 (235)
T cd03261 227 SDDPL 231 (235)
T ss_pred CCChh
Confidence 55444
No 74
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-38 Score=323.53 Aligned_cols=186 Identities=30% Similarity=0.491 Sum_probs=152.2
Q ss_pred CcEEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc------------------------e---------
Q 007337 395 GEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------I--------- 439 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------i--------- 439 (607)
..|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||| +
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3599999999997431 2369999999999999999999999999 1
Q ss_pred -------------------EEEccCC--CcccccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCCcccc-ccccC
Q 007337 440 -------------------SIVSQEP--VLFNCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQ-TFVGE 496 (607)
Q Consensus 440 -------------------~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~-T~ige 496 (607)
+||+|+| ++|+.|++|||.++.. ...++++..+.+ .+.++.+ |++ ....+
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLA-----KFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHH-----HHHHHHc--CCChhHhcC
Confidence 4899998 7999999999998731 123333322211 1233333 333 33567
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCC
Q 007337 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDG 574 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G 574 (607)
.+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 788999999999999999999999999999999999999999999998763 578999999999977 579999999999
Q ss_pred EEeEecChhHHhh
Q 007337 575 EIVESGTHEELLS 587 (607)
Q Consensus 575 ~Ive~G~~~eL~~ 587 (607)
+|++.|+++++.+
T Consensus 253 ~i~~~g~~~~~~~ 265 (320)
T PRK13631 253 KILKTGTPYEIFT 265 (320)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999997654
No 75
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-38 Score=307.67 Aligned_cols=180 Identities=35% Similarity=0.663 Sum_probs=161.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++|+|+++ .++|+|+||+|++||.++|+|+|||||
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999865 579999999999999999999999999
Q ss_pred eEEEccCC--CcccccHHHHhhcCCCC-CCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 ISIVSQEP--VLFNCSIEENIAYGCDG-KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 i~~V~Q~~--~Lf~gTIreNI~~g~~~-~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++||+|+| .+|..||.|.+.||... ..+. +++.++++.+++.++.+.-| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 89999999 89999999999998431 1233 45778999999988755444 6799999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCC--CeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG--RTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~--~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|.+|..+|+++|||||||+||+.+.+.+.+.++++.+. +|+|+|||+++.+.. ||+++||++|+++.+|+++|+.+.
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 99999999999999999999999999999999998654 799999999999877 999999999999999999888765
No 76
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.1e-38 Score=308.16 Aligned_cols=179 Identities=33% Similarity=0.529 Sum_probs=158.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.++++|++|+|++ .++|+|+||+|++||.++|+||+|||| +
T Consensus 2 ~L~~~~ls~~y~~---~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGG---KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECC---eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 3789999999974 479999999999999999999999999 9
Q ss_pred EEEccCC-CcccccHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 440 SIVSQEP-VLFNCSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 440 ~~V~Q~~-~Lf~gTIreNI~~g~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
|||||++ .-|.-|++|=+.+|+-+ +.|++.+.+|++.+++.++..+ .=..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999995 56899999999999631 1133358889999999887543 1246999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchh-hhhcCEEEEEeCCEEeEecChhHHh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
.|||||.++|+|++||||||+||......+++.++++.+ ++|+|+|.|+++. .+.||++++|++|+|+.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999998763 6999999999975 6889999999999999999999887
Q ss_pred hc
Q 007337 587 SK 588 (607)
Q Consensus 587 ~~ 588 (607)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
No 77
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-38 Score=312.77 Aligned_cols=183 Identities=30% Similarity=0.470 Sum_probs=160.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|+++.|++ .++|+|+||++++||.++|+|+|||||
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999973 369999999999999999999999999
Q ss_pred --eEEEccCCCcccccHHHHhhcCCC-------CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 --ISIVSQEPVLFNCSIEENIAYGCD-------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 --i~~V~Q~~~Lf~gTIreNI~~g~~-------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
++|++|++.+|+.|++||+.++.. .+..++++.++++.+++.+++..+ ..+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCcccCCHHHHHHH
Confidence 799999999999999999987521 011234577888888887665432 3456789999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++|+.+.
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999875 6999999999999999999998764
No 78
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-38 Score=302.27 Aligned_cols=178 Identities=35% Similarity=0.578 Sum_probs=156.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIV 442 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V 442 (607)
.|+++|++|+|+.+ ++|+||||+|++|++++|+||+|||| ||||
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYV 80 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYV 80 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEc
Confidence 59999999999743 59999999999999999999999999 9999
Q ss_pred ccC---CCcccccHHHHhhcCCCCC---------CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 443 SQE---PVLFNCSIEENIAYGCDGK---------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 443 ~Q~---~~Lf~gTIreNI~~g~~~~---------~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
||. .|=|+-||+|=+.+|+... .+.+++.+|++.+++.++. +-+||| |||||+||+-
T Consensus 81 PQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~~----LSGGQ~QRV~ 149 (254)
T COG1121 81 PQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVL 149 (254)
T ss_pred CcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcccc----cCcHHHHHHH
Confidence 995 5779999999999985321 1347899999999999774 334554 9999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||||.++|++|+|||||+++|+.++..|.+-|.++.+ +||+++|||+++.+. .+|+|+.|. ++++..|+.+|..+.
T Consensus 150 lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~~~~ 228 (254)
T COG1121 150 LARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEVLTE 228 (254)
T ss_pred HHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhccCH
Confidence 99999999999999999999999999999999998765 899999999999875 599999995 567889999887654
No 79
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-38 Score=326.03 Aligned_cols=180 Identities=35% Similarity=0.530 Sum_probs=158.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++|++++|+. +.++|+|+||+|++||.++|+||||||| |+|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 3899999999942 2469999999999999999999999999 999
Q ss_pred EccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+|+ .|++|||.|+.. ...+ ++++.++++..++.++....| .+||||||||++|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999995 699999998732 0122 245778899999988776665 48999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 999999999999999999999999999988754 68999999999866 56999999999999999999999875
No 80
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-38 Score=317.50 Aligned_cols=182 Identities=33% Similarity=0.586 Sum_probs=158.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.|+++|++++|+.....++|+|+||+|++||++||+|+||||| +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4899999999974322469999999999999999999999999 7
Q ss_pred EEEccCCC--cccccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 440 SIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 440 ~~V~Q~~~--Lf~gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+||+|+|. ++..|++|||.++... ..+ ++++.++++..++.++....| .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999983 6778999999987320 122 345788888888887765544 58999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999989999999999999999999988754
No 81
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1e-37 Score=307.78 Aligned_cols=177 Identities=37% Similarity=0.555 Sum_probs=153.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 369999999999999999999999999
Q ss_pred -----eEEEccCCCcccccHHHHhhcCCCC-CC-----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 -----ISIVSQEPVLFNCSIEENIAYGCDG-KA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 -----i~~V~Q~~~Lf~gTIreNI~~g~~~-~~-----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++|++|++.+|+.|++||+.++... .. .++++.++++..++.+.+...++ ..+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 5799999999999999999875310 11 13457788888888766554332 5689999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
|++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999998866689999999999876 5999999999999999988764
No 82
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-38 Score=324.30 Aligned_cols=179 Identities=34% Similarity=0.547 Sum_probs=157.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||| ++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5999999999963 368999999999999999999999999 899
Q ss_pred EccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+|+ .|++|||.|+.. ...+ ++++.++++..++.++.... ...||||||||+||||||
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARaL 151 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARAL 151 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 999999996 599999998631 0112 34677888888887665444 357999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++++.++
T Consensus 152 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 152 ILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999988754 78999999999986 56999999999999999999999875
No 83
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.3e-37 Score=299.60 Aligned_cols=168 Identities=37% Similarity=0.607 Sum_probs=149.7
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
.+.++++|++++|+.. ..++|+|+||+|++||.++|+|+|||||
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3579999999999753 2469999999999999999999999999
Q ss_pred -eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 -ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 -i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
++||+|+|.+|++|++|||.+.+ ..+++++.++++ +.+....|||||+||++||||+++
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 89999999999999999998764 345555555443 345678999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecCh
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTH 582 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~ 582 (607)
+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999988778999999999999988999999999999988863
No 84
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-37 Score=309.88 Aligned_cols=184 Identities=33% Similarity=0.509 Sum_probs=158.4
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 35999999999963 369999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCCC-C-CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCDG-K-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~~-~-~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++|++|++.+|+.|++|||.++... . .+ ++++.++++.+++.+.+ ++.+++ ...+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHH
Confidence 6799999999999999999886310 1 11 34567777877775433 233444 567899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 235 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDE 235 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999875 599999999999999999999
Q ss_pred Hhhc
Q 007337 585 LLSK 588 (607)
Q Consensus 585 L~~~ 588 (607)
+.+.
T Consensus 236 ~~~~ 239 (254)
T PRK14273 236 LFFN 239 (254)
T ss_pred HHhC
Confidence 9754
No 85
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-37 Score=307.95 Aligned_cols=178 Identities=33% Similarity=0.507 Sum_probs=152.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|++ .++|+|+||++++||+++|+||||||| ++||
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v 79 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFV 79 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEE
Confidence 789999999974 369999999999999999999999999 7899
Q ss_pred ccCCCccc-ccHHHHhhcCCCC-CC----C----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 443 SQEPVLFN-CSIEENIAYGCDG-KA----S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 443 ~Q~~~Lf~-gTIreNI~~g~~~-~~----~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+|+|.+|. .|++||+.++... .. + ++++.++++..++.+.... ...+||||||||++||
T Consensus 80 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~la 148 (239)
T cd03296 80 FQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADR-----------YPAQLSGGQRQRVALA 148 (239)
T ss_pred ecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHHHH
Confidence 99999985 6999999876310 01 1 2345566777776554433 3467999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||+++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 149 RALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 689999999999765 5999999999999999999998764
No 86
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-37 Score=314.45 Aligned_cols=182 Identities=30% Similarity=0.534 Sum_probs=153.9
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
|+++||+++|+... ..++|+||||+|++||++||+|+|||||
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997431 1369999999999999999999999999
Q ss_pred --eEEEccCC--CcccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 --ISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 --i~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
++||+|+| .+|+.|++|||.++.. ...+. +++.++++.+++. +.+........||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 68999998 6889999999998631 01233 3456677777664 11223445678999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988753 78999999999987 569999999999999999999986
Q ss_pred h
Q 007337 587 S 587 (607)
Q Consensus 587 ~ 587 (607)
+
T Consensus 234 ~ 234 (287)
T PRK13637 234 K 234 (287)
T ss_pred h
Confidence 5
No 87
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-37 Score=321.86 Aligned_cols=181 Identities=34% Similarity=0.544 Sum_probs=154.3
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
|+++|++++|+... +.++|+|+||+|++||+++|+|||||||
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997321 3469999999999999999999999999
Q ss_pred --eEEEccCCCccc-ccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 439 --ISIVSQEPVLFN-CSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 --i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
++||+|++.+|. .|++|||.++.. ...+. +++.++++..++.+.... ...+||||||||++
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~ 150 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADR-----------YPAQLSGGQKQRVA 150 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 899999999986 799999987521 01222 345666777666554433 34689999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhh
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
|||||+++|+|+|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~ 230 (343)
T PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFS 230 (343)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999998753 7899999999998865 99999999999999999999986
Q ss_pred c
Q 007337 588 K 588 (607)
Q Consensus 588 ~ 588 (607)
.
T Consensus 231 ~ 231 (343)
T PRK11153 231 H 231 (343)
T ss_pred C
Confidence 5
No 88
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.3e-37 Score=321.96 Aligned_cols=179 Identities=33% Similarity=0.501 Sum_probs=156.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||| ++|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999974 358999999999999999999999999 899
Q ss_pred EccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+|+ .|++|||.|+.. ...+ ++++.++++..++.++... ...+||||||||++|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~-----------~~~~LSgGq~QRvaLARaL 149 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERK-----------YPGQLSGGQQQRVALARAL 149 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 999999996 799999998732 0122 3457777887777665543 3468999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|+++|||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 150 ATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999988754 68999999999986 56999999999999999999999875
No 89
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-37 Score=308.87 Aligned_cols=183 Identities=32% Similarity=0.527 Sum_probs=159.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-CC-----CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|+.|++||+.++.. .. ..++++.++++.+++.+++.. .......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcccCCHHHH
Confidence 579999999999999999987521 01 123467778888887655432 34556788999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999885 5999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 764
No 90
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-37 Score=313.04 Aligned_cols=181 Identities=36% Similarity=0.638 Sum_probs=159.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.++++||+++|+.. .+++|+|+||+|++||+++|+|+||||| +
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999743 3469999999999999999999999999 8
Q ss_pred EEEccCC--CcccccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 440 SIVSQEP--VLFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 440 ~~V~Q~~--~Lf~gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+|++|+| .+++.|++|||.++... ..+ ++++.++++.+++.+++...| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 56788999999886310 122 245778888888888777665 47999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||+.+|+|+||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998764 7899999999999999999999999999999999988654
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.7e-37 Score=302.31 Aligned_cols=177 Identities=27% Similarity=0.471 Sum_probs=151.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
|+++||+++|++. ..++|+|+||++++||.++|+||||||| ++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 5789999999742 2469999999999999999999999999 789
Q ss_pred EccCCCcc-cccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLF-NCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf-~gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+| ..|++||+.++.. ...+ ++++.++++..++.+... + ...+||||||||++||||+
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~----~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-------K----RARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-------C----hhhhCCHHHHHHHHHHHHH
Confidence 99999998 6899999987421 0112 244667777777655432 2 2357999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999999999877899999999999886 5999999999999999998875
No 92
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.3e-37 Score=322.32 Aligned_cols=179 Identities=35% Similarity=0.562 Sum_probs=159.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.++++|++++|++ .++|+|+||++++||+++|+||||||| ++|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 5999999999964 368999999999999999999999999 899
Q ss_pred EccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+|+. |++|||.|+.. ...+ ++++.++++..++.++....| ..||||||||++|||||
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARaL 159 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARAV 159 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999965 99999998631 0122 345778888889988877766 47999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||++..+ ..||+|++|++|+|++.|++++++++
T Consensus 160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 160 VNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999998764 78999999999975 56999999999999999999999875
No 93
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-37 Score=307.63 Aligned_cols=185 Identities=33% Similarity=0.524 Sum_probs=159.8
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
.+.|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999964 369999999999999999999999999
Q ss_pred --------eEEEccCCCcccccHHHHhhcCCCC--CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 --------ISIVSQEPVLFNCSIEENIAYGCDG--KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 --------i~~V~Q~~~Lf~gTIreNI~~g~~~--~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++|++|++.+|+.|++||+.++... ..+ +++++++++.+++.+.+. ..+.+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 5589999999999999999875310 122 245677888887754432 2345667899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChh
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 583 (607)
||||++||||++++|+++||||||++||+.+++.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877789999999999885 59999999999999999999
Q ss_pred HHhhc
Q 007337 584 ELLSK 588 (607)
Q Consensus 584 eL~~~ 588 (607)
++.+.
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98764
No 94
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-37 Score=310.98 Aligned_cols=178 Identities=35% Similarity=0.592 Sum_probs=155.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
-|+++|++++|+.. .++|+|+||+|++||++||+|+||||| +
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48999999999632 469999999999999999999999999 8
Q ss_pred EEEccCC--CcccccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 440 SIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 440 ~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+||+|+| .+|..|++|||.++.. ...+ ++++.++++.+++.+.....| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 6889999999998631 0122 345788889989887766655 37999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHh
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
|||+.+|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+.+++.
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999998874 378999999999988 569999999999999999987653
No 95
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-36 Score=303.01 Aligned_cols=188 Identities=34% Similarity=0.505 Sum_probs=158.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.++++|++|+|++ .++|+|+||+|++||+++|+|+||||| +
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999964 369999999999999999999999999 7
Q ss_pred EEEccCCCcccccHHHHhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC
Q 007337 440 SIVSQEPVLFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 518 (607)
Q Consensus 440 ~~V~Q~~~Lf~gTIreNI~~g~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~ 518 (607)
+|++|++.+|+.|++||+.++... ...++++.++++..++.+.. .......||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999976321 12244567777777764211 1234668999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhcC-CchHH
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG-GVYTA 594 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~-g~y~~ 594 (607)
|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.... ..|..
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 999999999999999999999999998753 789999999999876 59999999999999999999998643 23544
Q ss_pred HH
Q 007337 595 LV 596 (607)
Q Consensus 595 l~ 596 (607)
.+
T Consensus 230 ~~ 231 (241)
T PRK14250 230 LF 231 (241)
T ss_pred HH
Confidence 33
No 96
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.7e-37 Score=306.59 Aligned_cols=178 Identities=29% Similarity=0.478 Sum_probs=149.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------e
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------I 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------i 439 (607)
++++|++++|++ .++|+|+||+|++||++||+|+||||| +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 369999999999999999999999999 7
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCC-C----------C----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 440 SIVSQEPVLFNC-SIEENIAYGCDGK-A----------S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 440 ~~V~Q~~~Lf~g-TIreNI~~g~~~~-~----------~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
+|++|++.+|++ |++|||.++.... . . .+++.++++.. |++.........|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV-----------GLADLADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc-----------CccchhhCChhhCCH
Confidence 899999999986 9999998863210 0 0 11233344433 344444556678999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecC
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGT 581 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~ 581 (607)
|||||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+|++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999998875 57899999999999865 99999999999999999
Q ss_pred hhHHhhc
Q 007337 582 HEELLSK 588 (607)
Q Consensus 582 ~~eL~~~ 588 (607)
++++.+.
T Consensus 227 ~~~~~~~ 233 (236)
T cd03219 227 PDEVRNN 233 (236)
T ss_pred HHHhccC
Confidence 9998653
No 97
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=319.77 Aligned_cols=179 Identities=35% Similarity=0.563 Sum_probs=156.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||| ++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 3889999999964 369999999999999999999999999 899
Q ss_pred EccCCCccc-ccHHHHhhcCCCC-----CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 442 VSQEPVLFN-CSIEENIAYGCDG-----KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 442 V~Q~~~Lf~-gTIreNI~~g~~~-----~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
|+|++.+|+ .|++|||.++... ..+ ++++.++++..++.++....| ..||||||||++|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHH
Confidence 999999997 5999999987320 112 345677888888876554443 5899999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||||+++|+++|||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999998764 689999999999865 5999999999999999999999865
No 98
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-37 Score=311.91 Aligned_cols=181 Identities=30% Similarity=0.505 Sum_probs=153.0
Q ss_pred EEEEeEEEECCCCCC--CcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 397 VELDDVWFAYPSRPN--HMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~--~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
|+++|++|+|+.... +++|+|+||+|++||+++|+|+|||||
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999974311 359999999999999999999999999
Q ss_pred ----eEEEccCC--CcccccHHHHhhcCCCC-CCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 ----ISIVSQEP--VLFNCSIEENIAYGCDG-KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 ----i~~V~Q~~--~Lf~gTIreNI~~g~~~-~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++||+|+| .+|+.|+.|||.|+... ..+. +++.++++..++.+.. ......+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHHH
Confidence 68999998 89999999999987320 1222 3456667777764211 12445789999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 585 (607)
|++|||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|+|++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998764 478999999999987 46999999999999999999998
Q ss_pred hh
Q 007337 586 LS 587 (607)
Q Consensus 586 ~~ 587 (607)
..
T Consensus 232 ~~ 233 (288)
T PRK13643 232 FQ 233 (288)
T ss_pred Hc
Confidence 65
No 99
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=4.6e-37 Score=320.12 Aligned_cols=180 Identities=33% Similarity=0.581 Sum_probs=158.2
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
+.|+++|++++|++ ..+|+|+||+|++||+++|+|||||||
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRG 80 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCC
Confidence 57999999999974 369999999999999999999999999
Q ss_pred eEEEccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 439 ISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 439 i~~V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
++||+|++.+|.. |++|||.|+.. ...+ ++++.++++..++.++....| .+||||||||++||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLA 149 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIA 149 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHH
Confidence 7899999999965 99999998631 1122 245777888888877766655 47999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK---GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~---~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+.+|+.++
T Consensus 150 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 150 RAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999988754 68999999999986 45999999999999999999999875
No 100
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=3.2e-37 Score=301.85 Aligned_cols=168 Identities=30% Similarity=0.504 Sum_probs=145.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++. ..++|+|+||+|++||+++|+|+|||||
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999643 2469999999999999999999999999
Q ss_pred -eEEEccCCCccc-ccHHHHhhcCC-----CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 -ISIVSQEPVLFN-CSIEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 -i~~V~Q~~~Lf~-gTIreNI~~g~-----~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++|++|++.+|. .|++||+.++. +.+..++++.++++..++.++....| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 689999999986 59999998752 10112456788888888877665544 4799999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEE
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 576 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~I 576 (607)
||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 3789999999999986 5899999999975
No 101
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-37 Score=301.22 Aligned_cols=170 Identities=36% Similarity=0.556 Sum_probs=145.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||| ++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 478999999964 369999999999999999999999999 7899
Q ss_pred ccCCCccc-ccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 443 SQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 443 ~Q~~~Lf~-gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+|++.+|. .|++||+.++... ..+ ++++.++++..++.+++... ..+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRY-----------PHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhhCCHHHHHHHHHHHHHh
Confidence 99999885 6999999875210 111 23466777777776655443 3579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999874 3789999999999875 59999999999998875
No 102
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-37 Score=314.13 Aligned_cols=181 Identities=36% Similarity=0.585 Sum_probs=160.0
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eE
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------IS 440 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~ 440 (607)
..|+++||+.+|. +..+++|+||+|++||.+++.||||||| |+
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 3599999999997 3579999999999999999999999999 99
Q ss_pred EEccCCCcc-cccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 441 IVSQEPVLF-NCSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 441 ~V~Q~~~Lf-~gTIreNI~~g~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
+|+|+.-|| .-||+|||.||-. .... ++++.++++.+++.++-...| ..|||||+||+||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 999999999 6899999999842 0122 247889999999998766655 679999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCch-hhhhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~-~l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
||..+|++||||||.||||.+-....+..++++. .+.|.|+|||+-+ .+.-+|||.||++|+|.+.|+++|+..+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 9999999999999999999998888888887654 3789999999986 57889999999999999999999998753
No 103
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=5.8e-37 Score=306.13 Aligned_cols=182 Identities=36% Similarity=0.556 Sum_probs=156.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++++|+||+|++||+++|+|+|||||
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999974 359999999999999999999999999
Q ss_pred -----eEEEccCCCcccccHHHHhhcCCC-CC-CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 -----ISIVSQEPVLFNCSIEENIAYGCD-GK-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 -----i~~V~Q~~~Lf~gTIreNI~~g~~-~~-~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++|+||++.+|+.|++||+.++.. .. .+ ++++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 679999999999999999987521 01 11 245677788888764442 1234456789999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998876789999999999875 59999999999999999999987
Q ss_pred hc
Q 007337 587 SK 588 (607)
Q Consensus 587 ~~ 588 (607)
+.
T Consensus 232 ~~ 233 (247)
T TIGR00972 232 TN 233 (247)
T ss_pred hC
Confidence 54
No 104
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-37 Score=306.63 Aligned_cols=183 Identities=35% Similarity=0.530 Sum_probs=158.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|+++.|++ .++|+|+||+|++||.++|+|+|||||
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999964 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-CC-----CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-GK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|+.|++|||.++.. .. ..+++++++++.+++.+++. +...+...+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 678999999999999999987521 01 12345667777777765443 234466789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999884 5999999999999999999999
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14245 233 FTN 235 (250)
T ss_pred hcC
Confidence 764
No 105
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.7e-37 Score=287.10 Aligned_cols=190 Identities=32% Similarity=0.530 Sum_probs=162.2
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|++++|+++|.+ ..+++||||+|++||.++|+|+|||||
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 36999999999964 479999999999999999999999999
Q ss_pred ---eEEEccCCCcc-cccHHHHhhcCCC--CCCCHHHHH----HHHHHcCchHH-HHhCCccccccccCCCCCCChhHHH
Q 007337 439 ---ISIVSQEPVLF-NCSIEENIAYGCD--GKASSADIE----NAAKMANAHDF-ISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 ---i~~V~Q~~~Lf-~gTIreNI~~g~~--~~~~~~~i~----~al~~a~l~~~-i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
+|+++|+.-|| +-||+||+.|--. ...+++.++ ..++.+||... .+.+| ..||||.+.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 99999999999 5699999998421 134455444 45778888777 55555 679999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
|.|||||+.-||+|+++|||||+|||.+...+.+.|+++.+ +.|+|+|||+++++. .||+|+++.+|+|+..|+.+|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999998877643 789999999998875 589999999999999999999
Q ss_pred HhhcC-CchHHHHHH
Q 007337 585 LLSKG-GVYTALVKR 598 (607)
Q Consensus 585 L~~~~-g~y~~l~~~ 598 (607)
|.+.+ +..+++++.
T Consensus 233 l~~sd~P~v~qf~~G 247 (263)
T COG1127 233 LLASDDPWVRQFFNG 247 (263)
T ss_pred HHhCCCHHHHHHhcC
Confidence 99864 444555543
No 106
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-37 Score=309.32 Aligned_cols=183 Identities=31% Similarity=0.561 Sum_probs=157.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
-|+++|++++|++....++|+|+||+|++||+++|+|+||||| +
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 4899999999975323469999999999999999999999999 7
Q ss_pred EEEccCC--CcccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 440 SIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 440 ~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+|++|+| .+++.|+.|||.++.. ...++ +++.++++.+++.++... ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 9999998 4778999999987521 01233 345678888888766443 2367999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
|||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++....
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 999999999999999999999999999999988754 78999999999999999999999999999999999987643
No 107
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-37 Score=320.96 Aligned_cols=179 Identities=34% Similarity=0.529 Sum_probs=155.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||| ++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4899999999964 369999999999999999999999999 899
Q ss_pred EccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+|. .|++|||.++.. ...+ ++++.++++..++.++....| .+||||||||++|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 999999996 599999998631 0122 245777888888876655444 57999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999988753 789999999999765 6999999999999999999999764
No 108
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-37 Score=311.78 Aligned_cols=182 Identities=29% Similarity=0.480 Sum_probs=153.7
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
|+++|++|+|+... ..++|+|+||+|++||++||+|+|||||
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997431 1469999999999999999999999999
Q ss_pred ----eEEEccCC--CcccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 ----ISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 ----i~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++||+|+| .+|+.|++|||.++.. ...+. +++.++++.+++++.+. ......|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~----------~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL----------ARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh----------hCCcccCCHHHHH
Confidence 58999998 6899999999998631 01232 34566777777753321 2345689999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
|++|||||+.+|+++|||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+.++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988753 789999999999875 699999999999999999998
Q ss_pred Hhhc
Q 007337 585 LLSK 588 (607)
Q Consensus 585 L~~~ 588 (607)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8654
No 109
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=308.11 Aligned_cols=185 Identities=31% Similarity=0.495 Sum_probs=160.2
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
.+.|+++|++++|++ .++|+|+||+|++||.++|+|+|||||
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 456999999999963 369999999999999999999999999
Q ss_pred --------eEEEccCCCcccccHHHHhhcCCC-CCC-----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 --------ISIVSQEPVLFNCSIEENIAYGCD-GKA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 --------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~-----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++|++|++.+|+.|++|||.++.. ... .++++.++++.+++.+++. +..+.....||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHH
Confidence 579999999999999999987521 011 1244677788777765543 2446677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChh
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 583 (607)
||||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|+|++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999999877899999999999875 59999999999999999999
Q ss_pred HHhhc
Q 007337 584 ELLSK 588 (607)
Q Consensus 584 eL~~~ 588 (607)
++.+.
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98754
No 110
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-37 Score=311.04 Aligned_cols=181 Identities=30% Similarity=0.529 Sum_probs=151.9
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
|+++|++|+|++.. ..++|+|+||+|++||++||+|+|||||
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997432 1369999999999999999999999999
Q ss_pred ----eEEEccCC--CcccccHHHHhhcCCCC-CCCHHH----HHHHHHHcCchHHHHhCCcccccc-ccCCCCCCChhHH
Q 007337 439 ----ISIVSQEP--VLFNCSIEENIAYGCDG-KASSAD----IENAAKMANAHDFISNFPEKYQTF-VGERGVRLSGGQK 506 (607)
Q Consensus 439 ----i~~V~Q~~--~Lf~gTIreNI~~g~~~-~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~-ige~G~~LSGGQk 506 (607)
|+||+|+| .+|+.|++|||.++... ..+.++ +.++++.+ |+++. ......+||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~~LSgGq~ 151 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDL-----------GFSRDVMSQSPFQMSGGQM 151 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc-----------CCChhhhhCCcccCCHHHH
Confidence 68999998 68999999999986311 133333 33344444 44432 3456788999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChh
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~ 583 (607)
||++|||||+.+|+|+||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999874 379999999999987 569999999999999999999
Q ss_pred HHhhc
Q 007337 584 ELLSK 588 (607)
Q Consensus 584 eL~~~ 588 (607)
++.+.
T Consensus 232 ~~~~~ 236 (286)
T PRK13646 232 ELFKD 236 (286)
T ss_pred HHHhC
Confidence 98764
No 111
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-37 Score=310.57 Aligned_cols=180 Identities=29% Similarity=0.526 Sum_probs=156.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++|+|+. +.++|+|+||+|++||+++|+|+|||||
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 2469999999999999999999999999
Q ss_pred -eEEEccCC--CcccccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 439 -ISIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 -i~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
++|++|+| .+|+.|++|||.++.. ...+ ++++.++++..++.++. .....+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLK-----------DKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------hCCcccCCHHHHHHHH
Confidence 79999998 6789999999987521 0122 24467777877776543 3457789999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999988754 789999999999986 699999999999999999999876
Q ss_pred c
Q 007337 588 K 588 (607)
Q Consensus 588 ~ 588 (607)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
No 112
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=9.9e-37 Score=303.95 Aligned_cols=177 Identities=34% Similarity=0.503 Sum_probs=150.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|+. +.++|+|+||++++||+++|+|||||||
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2469999999999999999999999999
Q ss_pred -eEEEccCCCccc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 -ISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 -i~~V~Q~~~Lf~-gTIreNI~~g~~~-------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
++||+|++.+|. .|++||+.++... ...++++.++++..++.+.+ .....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 689999999886 6999999875310 01123466667766665443 335678999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
|||||++||||++++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999988743 789999999999985 59999999999999999
Q ss_pred ChhHHh
Q 007337 581 THEELL 586 (607)
Q Consensus 581 ~~~eL~ 586 (607)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999874
No 113
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-36 Score=303.49 Aligned_cols=177 Identities=37% Similarity=0.530 Sum_probs=150.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
++++|++++|+++ .++|+|+||++++||+++|+|+|||||
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4789999999741 469999999999999999999999999
Q ss_pred -eEEEccCCCccc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 -ISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 -i~~V~Q~~~Lf~-gTIreNI~~g~~~-------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
++|++|++.+|. .|++||+.++... +..++++.++++..++.+. .......|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 689999999887 7999999875310 1123345566666665443 3345678999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
|||||++||||++++|+++|||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3789999999999987 69999999999999999
Q ss_pred ChhHHh
Q 007337 581 THEELL 586 (607)
Q Consensus 581 ~~~eL~ 586 (607)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999874
No 114
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=305.37 Aligned_cols=183 Identities=32% Similarity=0.512 Sum_probs=156.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999974 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC--CCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD--GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~--~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++||+|++.+|+.|++||+.++.. ... .++++.++++.+++.+.+. +.......+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 568999999999999999987521 011 1234556777777654432 234556778999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999875 5999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 235 ~~~ 237 (252)
T PRK14239 235 FMN 237 (252)
T ss_pred HhC
Confidence 764
No 115
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=303.40 Aligned_cols=174 Identities=35% Similarity=0.446 Sum_probs=152.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------eEEEcc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------ISIVSQ 444 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------i~~V~Q 444 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||| ++|++|
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 5999999999964 369999999999999999999999999 789999
Q ss_pred CCCccc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 007337 445 EPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILL 523 (607)
Q Consensus 445 ~~~Lf~-gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~Ill 523 (607)
++.+|+ .|++||+.++.. ...++++.++++..++.+... ....+||||||||++|||||+++|+++|
T Consensus 89 ~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 89 DARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred CccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999987 699999998632 223566788888888766543 3346899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 524 LDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 524 LDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
|||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.++
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDL 220 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccccc
Confidence 999999999999999999998864 3789999999999874 599999999999999988653
No 116
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-36 Score=301.70 Aligned_cols=180 Identities=35% Similarity=0.525 Sum_probs=153.2
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
|+++|++++|++.. ..++|+|+||+|++||.++|+|||||||
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999997431 1269999999999999999999999999
Q ss_pred --eEEEccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 439 --ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 --i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
++|++|++.+|. .|++|||.++.. ...+ .+++.++++..++.+.+.. ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 789999999997 699999987521 0112 3356677777777655443 34689999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999986 599999999999999999998865
No 117
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.9e-37 Score=308.45 Aligned_cols=182 Identities=32% Similarity=0.511 Sum_probs=153.9
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------------
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------------- 438 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------------- 438 (607)
.++|++++|+. .++|+|+||+|++||+++|+|+|||||
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 368999999999999999999999999
Q ss_pred -eEEEccCCCcc-cccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 -ISIVSQEPVLF-NCSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 -i~~V~Q~~~Lf-~gTIreNI~~g~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++|++|++.+| +.|++|||.++.. ....++++.++++.+++.+++...| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 68999999998 4699999987421 0112345778888888877766655 3799999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++|+.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988743 789999999999875 5999999999999999999999764
Q ss_pred -CCchH
Q 007337 589 -GGVYT 593 (607)
Q Consensus 589 -~g~y~ 593 (607)
...|.
T Consensus 252 ~~~~~~ 257 (269)
T cd03294 252 PANDYV 257 (269)
T ss_pred cCcHHH
Confidence 33343
No 118
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=306.73 Aligned_cols=185 Identities=31% Similarity=0.488 Sum_probs=159.5
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
.+.|+++||+++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 357999999999963 369999999999999999999999999
Q ss_pred --------eEEEccCCCcccccHHHHhhcCCC-CC-----C-CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 --------ISIVSQEPVLFNCSIEENIAYGCD-GK-----A-SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 --------i~~V~Q~~~Lf~gTIreNI~~g~~-~~-----~-~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
++|++|++.+|+.|++||+.++.. .. . .++++.++++.+++.+++. +.......+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 589999999999999999987521 01 1 1345677888888865442 233456778999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecCh
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 582 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~ 582 (607)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998877789999999999985 5899999999999999999
Q ss_pred hHHhhc
Q 007337 583 EELLSK 588 (607)
Q Consensus 583 ~eL~~~ 588 (607)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998753
No 119
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-37 Score=297.60 Aligned_cols=179 Identities=34% Similarity=0.575 Sum_probs=156.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++..|+. .++++||||+|+.||.+|+.|||||||
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 4788999999974 368999999999999999999999999
Q ss_pred eEEEccCCCcc-cccHHHHhhcCC------CC-CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 439 ISIVSQEPVLF-NCSIEENIAYGC------DG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 i~~V~Q~~~Lf-~gTIreNI~~g~------~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
||+|+|+.-|| .-||+|||.||- |+ ...+.++.+.++.|+|..+-+.-| .+||||||||+|
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999998 789999999995 11 123556888899998877655544 679999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchh-hhhcCEEEEEeCCEEeEecChhHHhh
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
|||||...|++|+||||++|||++-.+.+.+-|+++.. +.|+++|||+.+. .+.||+|+||++|+|.+.|+.+|...
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 99999999999999999999999988888888776542 7899999999975 57899999999999999999999986
Q ss_pred c
Q 007337 588 K 588 (607)
Q Consensus 588 ~ 588 (607)
.
T Consensus 228 ~ 228 (345)
T COG1118 228 H 228 (345)
T ss_pred C
Confidence 5
No 120
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.8e-37 Score=299.15 Aligned_cols=176 Identities=35% Similarity=0.526 Sum_probs=149.3
Q ss_pred EEEEeEEEECCCCCC-CcccccceEEeeCCCEEEEEcCCCCcc-------------------------------eEEEcc
Q 007337 397 VELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------ISIVSQ 444 (607)
Q Consensus 397 I~~~~vsf~y~~~~~-~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------i~~V~Q 444 (607)
|+++|++++|++... .++|+|+||+|++||+++|+|+||||| ++||+|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999974211 469999999999999999999999999 799999
Q ss_pred CCCccc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC
Q 007337 445 EPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 518 (607)
Q Consensus 445 ~~~Lf~-gTIreNI~~g~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~ 518 (607)
++.+|+ .|++||+.++.. ... .++++.++++..++.+.+...| .+||||||||++||||++++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHHHHHHcC
Confidence 999997 799999987521 011 2345677888888776655444 57999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEe--CCEEeEecChh
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVS--DGEIVESGTHE 583 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~--~G~Ive~G~~~ 583 (607)
|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|++.++.+
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 99999999999999999999999998874 3789999999999764 699999999 79999988753
No 121
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-36 Score=308.66 Aligned_cols=182 Identities=30% Similarity=0.530 Sum_probs=158.9
Q ss_pred cEEEEeEEEECCCCC---CCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------
Q 007337 396 EVELDDVWFAYPSRP---NHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~---~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------- 438 (607)
-|+++|++++|+... .+++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997431 2469999999999999999999999999
Q ss_pred ---eEEEccCCC--cccccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ---ISIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ---i~~V~Q~~~--Lf~gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++||+|+|. +|..|+.||+.++... ..+ ++++.++++.+++.+++...| .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 789999984 7778999999986310 112 355788888889887766554 5799999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHh
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
++||||++++|+++|||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999998743 78999999999999899999999999999999999987
Q ss_pred hc
Q 007337 587 SK 588 (607)
Q Consensus 587 ~~ 588 (607)
+.
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
No 122
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.3e-36 Score=299.74 Aligned_cols=178 Identities=30% Similarity=0.513 Sum_probs=151.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
++++|++++|++ .++|+|+||+|++||+++|+|+||||| ++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 689999999963 369999999999999999999999999 789
Q ss_pred EccCCCc-ccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVL-FNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~L-f~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
++|++.+ +..|++||+.++.. ...+. +++.++++..++ +........+||||||||++||||+
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGL-----------AERADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999988 57899999987531 11222 223444444443 3344556678999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999999875 37899999999999999999999999999999999999875
No 123
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.8e-37 Score=318.99 Aligned_cols=166 Identities=33% Similarity=0.500 Sum_probs=145.3
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc----------------------------------------eEEEccCCCccc-
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------------ISIVSQEPVLFN- 450 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------------i~~V~Q~~~Lf~- 450 (607)
..+|+|+||+|++||.++|+|+||||| ++||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 468999999999999999999999999 799999999997
Q ss_pred ccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 007337 451 CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525 (607)
Q Consensus 451 gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLD 525 (607)
.|++|||.++... ..+ ++++.++++.++|.+++...| .+||||||||++|||||+++|+|+|||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----------~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP-----------DELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCCh-----------hhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 5999999986320 112 345677888888876655444 479999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 526 EATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 526 E~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+++|++++
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999999998774 379999999999975 66999999999999999999999875
No 124
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-36 Score=305.46 Aligned_cols=185 Identities=31% Similarity=0.488 Sum_probs=160.5
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
...|+++|++++|++ .++|+|+||++++||.++|+|+|||||
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999963 469999999999999999999999999
Q ss_pred --------eEEEccCCCcccccHHHHhhcCCCC--CC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 --------ISIVSQEPVLFNCSIEENIAYGCDG--KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 --------i~~V~Q~~~Lf~gTIreNI~~g~~~--~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++||+|++.+|..|++|||.++... .. .++++.++++.+++.+++. +.+......||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHH
Confidence 6899999999999999999885210 11 1345677788888765543 3345677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChh
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 583 (607)
||||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877899999999999875 59999999999999999999
Q ss_pred HHhhc
Q 007337 584 ELLSK 588 (607)
Q Consensus 584 eL~~~ 588 (607)
++.+.
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 98764
No 125
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-36 Score=306.44 Aligned_cols=181 Identities=34% Similarity=0.571 Sum_probs=158.2
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++|+|++. ..++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999743 3469999999999999999999999999
Q ss_pred ---eEEEccCC--CcccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ---ISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ---i~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++||+|+| .+++.|++|||.++.. ...+. +++.++++.+++.++....| .+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHH
Confidence 78999998 4678999999987632 12333 34677888888877665554 6899999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHh
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
++|||||+++|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999999999999999999999999999876
Q ss_pred h
Q 007337 587 S 587 (607)
Q Consensus 587 ~ 587 (607)
+
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 5
No 126
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.1e-37 Score=296.39 Aligned_cols=167 Identities=34% Similarity=0.544 Sum_probs=145.6
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEEcc
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIVSQ 444 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V~Q 444 (607)
+++|++++|++. .++|+|+||++++||+++|+||||||| ++|++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q 78 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQ 78 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEec
Confidence 468999999641 469999999999999999999999999 789999
Q ss_pred CC--CcccccHHHHhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCE
Q 007337 445 EP--VLFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 521 (607)
Q Consensus 445 ~~--~Lf~gTIreNI~~g~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~I 521 (607)
+| .+|+.|++||+.++.+. ...++++.++++.+++.++....| ..||||||||++||||++++|++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~p~l 147 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSGKDL 147 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhCCCE
Confidence 98 47889999999886421 123457889999999887765554 47999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhhh-hcCEEEEEeCCEEe
Q 007337 522 LLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 577 (607)
Q Consensus 522 llLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Iv 577 (607)
+||||||++||+.+.+.+.+.|+++ .+++|+|++||+++.+. .||+|++|++|+++
T Consensus 148 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 148 LIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999887 35789999999999986 59999999999985
No 127
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-36 Score=300.05 Aligned_cols=175 Identities=29% Similarity=0.406 Sum_probs=148.4
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
-++++||+|+|+++. ..++|+|+||+|++||+++|+|+|||||
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 1469999999999999999999999999
Q ss_pred ----eEEEccCCCcccc-cHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ----ISIVSQEPVLFNC-SIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ----i~~V~Q~~~Lf~g-TIreNI~~g~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++|++|++.+|+. |++||+.++.. ... .++++.++++..++.+.. .....+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRA-----------NHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHH
Confidence 6899999999975 99999987310 011 123466777777665443 33456899999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEeEecC
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 581 (607)
++||||++++|+|+||||||++||+.+...+.+.|+++. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4789999999999999999999999999998875
No 128
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=304.42 Aligned_cols=182 Identities=31% Similarity=0.507 Sum_probs=156.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
-+++|++|+|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 469999999999999999999999999
Q ss_pred -----eEEEccCCCcccccHHHHhhcCCC-CC------CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 -----ISIVSQEPVLFNCSIEENIAYGCD-GK------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 -----i~~V~Q~~~Lf~gTIreNI~~g~~-~~------~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++||+|++.+|++|++|||.++.. .. ..++++.++++..++.+++. +.+...+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhhCCHHHH
Confidence 579999999999999999987521 01 11234667777777765432 234556778999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 5999999999999999999999
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 236 ~~~ 238 (251)
T PRK14244 236 FKN 238 (251)
T ss_pred hcC
Confidence 764
No 129
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=3e-36 Score=295.28 Aligned_cols=174 Identities=32% Similarity=0.528 Sum_probs=156.8
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------------
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------------- 438 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------------- 438 (607)
.+.|++|+|+.. .++|+|+||+|++||.++|+|+|||||
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999754 469999999999999999999999999
Q ss_pred -eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 -ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 -i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
++|++|+|.+|+.|++|||.++.+ .++++..++++.+++.+++..+|.|++|.++....+||||||||++||||+++
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 679999999999999999998743 45667788999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHH--HHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCE
Q 007337 518 NPRILLLDEATSALDAESEYLVQD--AMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGE 575 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~--~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~ 575 (607)
+|+++||||||++||+.+...+.+ .++.+. .++|+|++||+++.++.||+|++|++|.
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999998888877 344332 3689999999999999999999999884
No 130
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.3e-36 Score=297.01 Aligned_cols=170 Identities=32% Similarity=0.563 Sum_probs=145.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||| ++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 578999999974 369999999999999999999999999 7899
Q ss_pred ccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 443 SQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 443 ~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+|++.+|. .|++||+.++.. ...+ ++++.++++..++.+.+... ...||||||||++||||++
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRK-----------PKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCC-----------hhhCCHHHHHHHHHHHHHh
Confidence 99999985 699999987521 0112 23456677777776654443 3679999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEeEec
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 580 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G 580 (607)
++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999988753 7899999999998765 9999999999999876
No 131
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.4e-36 Score=298.57 Aligned_cols=177 Identities=31% Similarity=0.475 Sum_probs=147.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------e
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------I 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------i 439 (607)
|+++||+++|++ .++|+|+||+|++||++||+||||||| +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999964 369999999999999999999999999 8
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 440 SIVSQEPVLFNC-SIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 440 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
+|++|++.+|.+ |++||+.++.. ... .+++.++++.. .. ++.........||||||||++||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~------~~----l~~~~~~~~~~LS~G~~qrv~lara 146 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAY-ARRRAKRKARLERVYELF------PR----LKERRKQLAGTLSGGEQQMLAIARA 146 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhh-hcCchhHHHHHHHHHHHH------Hh----hhhhhhCchhhCCHHHHHHHHHHHH
Confidence 999999999986 99999998642 221 11222333322 11 2223345567899999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
++++|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 147 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred HhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999999998875 4789999999999865 599999999999999999988754
No 132
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-36 Score=297.36 Aligned_cols=175 Identities=28% Similarity=0.470 Sum_probs=150.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
|+++|++++|++ .++|+|+||++++||++||+|+||||| ++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 578999999964 369999999999999999999999999 789
Q ss_pred EccCCCcccc-cHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFNC-SIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
++|++.+|.. |++||+.++.. ... .++++.++++..++.+..... ...||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 9999998874 99999986411 011 234577888888887654433 257999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
+.+|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999988753 689999999999876 5999999999999999998774
No 133
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=305.49 Aligned_cols=181 Identities=34% Similarity=0.616 Sum_probs=155.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.|+++|++++|++. +.++|+|+||+|++||+++|+||||||| +
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999643 3479999999999999999999999999 7
Q ss_pred EEEccCC--CcccccHHHHhhcCCC-CCCCHH----HHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 440 SIVSQEP--VLFNCSIEENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 440 ~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+|++|+| .+++.|++|||.++.. ...+.+ ++.++++..++.+++... ..+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHHH
Confidence 9999998 4567899999987521 012322 356677777777665543 368999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999999999999999999999999887654
No 134
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-36 Score=302.02 Aligned_cols=184 Identities=35% Similarity=0.539 Sum_probs=157.6
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
+.|+++||+++|++ .++++|+||+|++||+++|+|+|||||
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999974 369999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCC-CCC-----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCD-GKA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~-----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++|++|++.+|+.|++|||.++.. ... .++++.++++.+++.+.+. ........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 579999999999999999988521 011 2345666777777755443 22345677899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877899999999999875 599999999999999999999
Q ss_pred Hhhc
Q 007337 585 LLSK 588 (607)
Q Consensus 585 L~~~ 588 (607)
+...
T Consensus 232 ~~~~ 235 (250)
T PRK14240 232 LFTN 235 (250)
T ss_pred HHhC
Confidence 8754
No 135
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-36 Score=303.07 Aligned_cols=183 Identities=33% Similarity=0.478 Sum_probs=156.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 5899999999974 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-CC-CCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-GK-ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~~-~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|+.|++||+.++.. .. .++ +++.++++..++.+++. ..+.....+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 569999999999999999987631 01 122 23555677777755432 233456778999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999875 5999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 242 ~~~ 244 (259)
T PRK14274 242 FSN 244 (259)
T ss_pred hhC
Confidence 754
No 136
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-36 Score=305.07 Aligned_cols=179 Identities=34% Similarity=0.562 Sum_probs=154.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------e
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------I 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------i 439 (607)
++++|++++|++. .++|+|+||+|++||++||+|+||||| +
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 7899999999632 459999999999999999999999999 7
Q ss_pred EEEccCCC--cccccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 440 SIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 440 ~~V~Q~~~--Lf~gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+|++|+|. +++.|++|||.++... ..+ ++++.++++..++.+.+.. ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 6788999999886320 122 3446667777777655433 3468999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||++++|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.++.||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998864 47899999999999999999999999999999999987653
No 137
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.4e-36 Score=311.91 Aligned_cols=192 Identities=32% Similarity=0.465 Sum_probs=156.5
Q ss_pred cEEEEeEEEECCCCC----------CCcccccceEEeeCCCEEEEEcCCCCcc---------------------------
Q 007337 396 EVELDDVWFAYPSRP----------NHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~----------~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------- 438 (607)
-++++|++++|+... ...+++|+||+|++||++||+|+|||||
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999997421 2468999999999999999999999999
Q ss_pred ------------eEEEccCC--Ccc-cccHHHHhhcCCC---CCCCH----HHHHHHHHHcCchHHHHhCCccccccccC
Q 007337 439 ------------ISIVSQEP--VLF-NCSIEENIAYGCD---GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGE 496 (607)
Q Consensus 439 ------------i~~V~Q~~--~Lf-~gTIreNI~~g~~---~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige 496 (607)
++||+|+| .++ ..||.|||.++.. ...+. +++.++++.+++.+.. ...
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~----------~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNL----------INR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH----------hcC
Confidence 89999998 466 5899999975310 02333 3355667777663221 223
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeC
Q 007337 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSD 573 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~ 573 (607)
....||||||||++|||||+.+|+++|+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999988754 7899999999999975 999999999
Q ss_pred CEEeEecChhHHhhc-CCchHH-HHH
Q 007337 574 GEIVESGTHEELLSK-GGVYTA-LVK 597 (607)
Q Consensus 574 G~Ive~G~~~eL~~~-~g~y~~-l~~ 597 (607)
|+|+|.|+.+++.++ ...|.+ ++.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKALMS 263 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHHHHh
Confidence 999999999999875 334543 444
No 138
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=304.10 Aligned_cols=183 Identities=33% Similarity=0.528 Sum_probs=156.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||++||+|+|||||
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++|++|++.+|+.|++||+.++.. ...+. +++.++++.+++.+++. .........|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHHH
Confidence 579999999999999999987521 01222 34566777777654321 2233456789999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
|++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999999998877899999999999885 59999999999999999999997
Q ss_pred hc
Q 007337 587 SK 588 (607)
Q Consensus 587 ~~ 588 (607)
+.
T Consensus 242 ~~ 243 (258)
T PRK14268 242 HN 243 (258)
T ss_pred cC
Confidence 53
No 139
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=316.47 Aligned_cols=180 Identities=30% Similarity=0.524 Sum_probs=155.8
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eE
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------IS 440 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~ 440 (607)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||| ++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPIN 94 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35999999999963 368999999999999999999999999 89
Q ss_pred EEccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 441 IVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 441 ~V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
||+|++.+|+. |++|||.|+.. ...+ ++++.++++..++.++....| .+||||||||++||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLARA 163 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALARS 163 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 99999998732 1122 245667788888776655444 4799999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+.+|+..+
T Consensus 164 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 164 LAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999988877643 68999999999975 56999999999999999999999875
No 140
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=284.87 Aligned_cols=179 Identities=37% Similarity=0.527 Sum_probs=156.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++||+..||+ .+.+|+||||+|++||.|||+|+|||||
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999985 4679999999999999999999999999
Q ss_pred --eEEEccCCCcc-cccHHHHhhcCCCC----------CCCH---HHHHHHHHHcCchHHHHhCCccccccccCCCCCCC
Q 007337 439 --ISIVSQEPVLF-NCSIEENIAYGCDG----------KASS---ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 439 --i~~V~Q~~~Lf-~gTIreNI~~g~~~----------~~~~---~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
+|+++|++-|- .-|+.+|++.|+-. -++. .+..+|++..++.+... .+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccCC
Confidence 99999999986 67999999987531 1223 34567788888877643 4678999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEe
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVES 579 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~ 579 (607)
|||+||++|||||+++|+|+|-|||+|+|||.+.+.|++.|++.. .+.|+|+.-|.+++.+ .||||+=|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998764 4789999999999874 6999999999999999
Q ss_pred cChhHHhh
Q 007337 580 GTHEELLS 587 (607)
Q Consensus 580 G~~~eL~~ 587 (607)
|+.+||-+
T Consensus 230 g~~~el~~ 237 (258)
T COG3638 230 GPASELTD 237 (258)
T ss_pred CChhhhhH
Confidence 99999644
No 141
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-36 Score=304.20 Aligned_cols=184 Identities=30% Similarity=0.476 Sum_probs=156.6
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 20 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 20 HILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred ceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 35999999999963 369999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCC--CC-C---CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCD--GK-A---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~--~~-~---~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++|++|++.+|++|++||+.++.. .. . .++++.++++.+++.+.+. ........+|||||
T Consensus 97 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 169 (268)
T PRK14248 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQ 169 (268)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHH
Confidence 579999999999999999987521 01 1 1234666777776643322 22345677899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 249 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQ 249 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877789999999999775 699999999999999999999
Q ss_pred Hhhc
Q 007337 585 LLSK 588 (607)
Q Consensus 585 L~~~ 588 (607)
+...
T Consensus 250 ~~~~ 253 (268)
T PRK14248 250 IFTS 253 (268)
T ss_pred HHhC
Confidence 8764
No 142
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-36 Score=301.21 Aligned_cols=183 Identities=32% Similarity=0.542 Sum_probs=156.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++|+|++ .++|+|+||+|++|++++|+|+|||||
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCCC-CC-C----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCDG-KA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~~-~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++||+|++.+|+.|++|||.++... .. . ++++.++++..++.+.+. ........+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCcccCCHHHH
Confidence 7799999999999999999886310 11 1 233555666666654433 335567889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999998865 799999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 654
No 143
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-36 Score=294.46 Aligned_cols=169 Identities=30% Similarity=0.485 Sum_probs=146.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
|+++|++|+|++ .++|+|+||++++| +++|+||||||| ++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 578999999964 36999999999999 999999999999 789
Q ss_pred EccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
++|++.+|.+ |++||+.+... ...+ ++++.++++..++.++.+. ....||||||||++||||+
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 9999999986 99999986310 0111 3457778888888765432 2357999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999998877899999999999986 59999999999998865
No 144
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=302.69 Aligned_cols=183 Identities=33% Similarity=0.535 Sum_probs=155.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++|+|+. .++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999964 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-CCC-----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-GKA-----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~-----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|+.|++||+.++.. ... .++++.++++.+++++.+ .........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET-------KDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch-------HHHhccChhhCCHHHH
Confidence 568999999999999999987521 011 123466677777764321 1123456679999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998764 999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
...
T Consensus 234 ~~~ 236 (251)
T PRK14251 234 FIA 236 (251)
T ss_pred HhC
Confidence 754
No 145
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-36 Score=305.04 Aligned_cols=179 Identities=34% Similarity=0.571 Sum_probs=155.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
++++|++++|+.. .++|+|+||+|++||+++|+|+||||| ++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999642 359999999999999999999999999 89
Q ss_pred EEccCC--CcccccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 441 IVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 441 ~V~Q~~--~Lf~gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
||+|+| .+|+.|++||+.++.. ...+ ++++.++++.+++.+++...| ..||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVP-----------HHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHHHHHH
Confidence 999998 4788999999987521 0123 234678888888877665544 589999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||+.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++|+.+.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999988754 78999999999998 57999999999999999999998764
No 146
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.9e-36 Score=316.97 Aligned_cols=179 Identities=29% Similarity=0.526 Sum_probs=158.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||| +
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4899999999963 469999999999999999999999999 8
Q ss_pred EEEccCCCc-ccccHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 440 SIVSQEPVL-FNCSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 440 ~~V~Q~~~L-f~gTIreNI~~g~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
+||+|++.+ |+.|++||+.+++.. ..++++++++++..++.++... ....||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999988 789999999887420 1234568889999998776543 2467999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
+|||||+++|+|+||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 478999999999998 5699999999999999999999875
Q ss_pred c
Q 007337 588 K 588 (607)
Q Consensus 588 ~ 588 (607)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
No 147
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.7e-36 Score=297.15 Aligned_cols=169 Identities=35% Similarity=0.478 Sum_probs=143.2
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
|+++|++++|++.. ..++|+|+||+|++||+++|+|||||||
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 1469999999999999999999999999
Q ss_pred ---eEEEccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 ---ISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 ---i~~V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
++|++|++.+|.+ |++||+.++.. ...+ ++++.++++..++.+... ....+||||||||+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 7899999999986 99999988531 0111 234666777766655433 34468999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEE
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEI 576 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~I 576 (607)
+||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999998754 7899999999999989999999999974
No 148
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.9e-36 Score=299.39 Aligned_cols=177 Identities=26% Similarity=0.423 Sum_probs=152.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------e
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------I 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------i 439 (607)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||| +
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999964 369999999999999999999999999 8
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCCC-------------CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 440 SIVSQEPVLFNC-SIEENIAYGCDGK-------------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 440 ~~V~Q~~~Lf~g-TIreNI~~g~~~~-------------~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
+|++|++.+|++ |++||+.++.... ..++++.++++..++.+ ........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHH
Confidence 899999999986 9999998853200 01233455555554433 3345567899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
|||++||||++++|+++|||||||+||+++...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999986 599999999999999999999
Q ss_pred Hhh
Q 007337 585 LLS 587 (607)
Q Consensus 585 L~~ 587 (607)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 864
No 149
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-36 Score=300.69 Aligned_cols=183 Identities=32% Similarity=0.514 Sum_probs=157.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4899999999973 369999999999999999999999999
Q ss_pred -----eEEEccCCCcccccHHHHhhcCCC-CCC-C----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 -----ISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 -----i~~V~Q~~~Lf~gTIreNI~~g~~-~~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++|++|++.+|+.|++|||.++.. ... + ++++.++++.+++.+++. +.+......|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 679999999999999999987521 011 1 234556677777765442 2345556789999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+|++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999998775 9999999999999999999886
Q ss_pred hc
Q 007337 587 SK 588 (607)
Q Consensus 587 ~~ 588 (607)
+.
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 53
No 150
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-36 Score=300.60 Aligned_cols=181 Identities=33% Similarity=0.534 Sum_probs=151.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
++++||+++|++. .++|+|+||+|++||+++|+||||||| ++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999742 469999999999999999999999999 79
Q ss_pred EEccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 441 IVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 441 ~V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
|++|++.+|. .|++||+.++.. ...+ ++++.++++..++.+ +........+||||||||++||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHHH
Confidence 9999999995 799999987521 0112 234555666655542 012344567899999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ ..||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998753 79999999999976 56999999999999999999998754
No 151
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=301.83 Aligned_cols=183 Identities=33% Similarity=0.496 Sum_probs=155.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999964 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccc-cHHHHhhcCCC-CC------CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 ------ISIVSQEPVLFNC-SIEENIAYGCD-GK------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~g-TIreNI~~g~~-~~------~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++|++|++.+|+. |++||+.++.. .. ..++++.++++..++.+++. ........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVK-------DRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchh-------hhhccChhhCCHH
Confidence 3689999999975 99999987521 01 11234667777777654432 1234566789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChh
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 583 (607)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877799999999999875 59999999999999999999
Q ss_pred HHhhc
Q 007337 584 ELLSK 588 (607)
Q Consensus 584 eL~~~ 588 (607)
++.+.
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98764
No 152
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.3e-36 Score=295.76 Aligned_cols=170 Identities=32% Similarity=0.469 Sum_probs=143.1
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
|+++||+++|++.. ..++|+|+||+|++||+++|+|||||||
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996421 1469999999999999999999999999
Q ss_pred ---eEEEccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 ---ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 ---i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
++||+|++.+|+ .|++||+.++.. ...+ ++++.++++..++.+... .....||||||||+
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 689999999995 699999987411 0111 234556666666654433 33467999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEe
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIV 577 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Iv 577 (607)
+||||++++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999988753 78999999999999999999999999986
No 153
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.6e-36 Score=297.76 Aligned_cols=177 Identities=29% Similarity=0.496 Sum_probs=148.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------e
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------I 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------i 439 (607)
|+++|++++|++ .++|+|+||++++||+++|+|+||||| +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999964 369999999999999999999999999 7
Q ss_pred EEEccCCCcccc-cHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 440 SIVSQEPVLFNC-SIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 440 ~~V~Q~~~Lf~g-TIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
+|++|++.+|++ |++||+.++.+ ...+. +++.++++..+ ++........+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFH-----------ITHLRKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHHHH
Confidence 899999999987 99999987532 01222 22334444444 343445556789999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhh
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
|++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999999998875 478999999999765 4599999999999999999998864
No 154
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=4e-36 Score=292.30 Aligned_cols=170 Identities=31% Similarity=0.483 Sum_probs=148.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|++ .++|+|+||++++|+.++|+|+||||| ++||
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 578999999963 469999999999999999999999999 7899
Q ss_pred ccCCCcc-cccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 443 SQEPVLF-NCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 443 ~Q~~~Lf-~gTIreNI~~g~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
+|++.+| +.|++||+.++.. ...+++++.++++..++.+.+.. ....||||||||++||||++++|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999888 5899999987531 12356678888999888766543 346799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998865 4789999999999886 59999999999999865
No 155
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=5.2e-36 Score=297.20 Aligned_cols=177 Identities=34% Similarity=0.530 Sum_probs=152.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|++ .++|+|+||++.+||+++|+|+||||| ++|+
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEE
Confidence 578999999974 369999999999999999999999999 7999
Q ss_pred ccCCCcccc-cHHHHhhcCCCC-CC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 443 SQEPVLFNC-SIEENIAYGCDG-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 443 ~Q~~~Lf~g-TIreNI~~g~~~-~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
||+|.+|++ |++||+.++... .. .++++.++++..++.++..+ ...+|||||+||++||||++
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~lS~G~~qrl~laral~ 146 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR-----------YPNQLSGGQRQRVALARALA 146 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 999999975 999999875320 11 13445666777666555443 33689999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
++|+++||||||++||+++++.+.+.|.+..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 220 (237)
T TIGR00968 147 VEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYD 220 (237)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHc
Confidence 99999999999999999999999999998654 689999999999875 499999999999999999999975
No 156
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-36 Score=299.09 Aligned_cols=184 Identities=28% Similarity=0.518 Sum_probs=157.5
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
+.|+++|++++|++ .++|+|+||+|++||.++|+|+|||||
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46999999999973 369999999999999999999999999
Q ss_pred -------eEEEccCCCccc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 -------ISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~-gTIreNI~~g~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++|++|++.+|. .|++|||.++.. ...+ ++++.++++.+++.+++.. .......+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 568999999998 699999987421 0111 2446677778887654432 223456789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChh
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 583 (607)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877899999999999885 69999999999999999999
Q ss_pred HHhhc
Q 007337 584 ELLSK 588 (607)
Q Consensus 584 eL~~~ 588 (607)
++...
T Consensus 233 ~~~~~ 237 (252)
T PRK14256 233 KIFTT 237 (252)
T ss_pred HHHhC
Confidence 98754
No 157
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-36 Score=300.59 Aligned_cols=183 Identities=31% Similarity=0.470 Sum_probs=157.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCCC-C-CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCDG-K-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~~-~-~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|+.|++|||.++... . .+ ++++.++++.+++.+.+ .+.+.....+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhhCCHHHH
Confidence 4689999999999999999986310 0 11 23455666666664433 2345677889999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999986 5999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14261 236 FEN 238 (253)
T ss_pred HhC
Confidence 754
No 158
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.2e-36 Score=272.88 Aligned_cols=173 Identities=30% Similarity=0.509 Sum_probs=153.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+|+||+..|+.. +++|+||||+|++||.+-++|||||||
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999865 579999999999999999999999999
Q ss_pred -eEEEccCCCcc-cccHHHHhhcCC-----CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 -ISIVSQEPVLF-NCSIEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 -i~~V~Q~~~Lf-~gTIreNI~~g~-----~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
||+|+||.-|. +-|+.||+.|.- ++..-.+++.++++.++|.+-...|| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 99999999875 789999999842 21223456888999999999999998 5699999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhhhhc-CEEEEEeCCEEeEecCh
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSA-DTVAVVSDGEIVESGTH 582 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~ItHrl~~l~~a-D~Iivl~~G~Ive~G~~ 582 (607)
|||+..+|++||-||||-+|||.+...|++.+.++ ..+-||++.||..+.+..+ -+++.+++|+++....+
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999998876 3488999999999999765 57899999999876544
No 159
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5e-36 Score=293.86 Aligned_cols=173 Identities=28% Similarity=0.470 Sum_probs=146.1
Q ss_pred EEEEeEEEECCCCCC-CcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eE
Q 007337 397 VELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~-~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~ 440 (607)
|+++|++++|++... .++|+|+||++++||+++|+|+||||| ++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 689999999975311 269999999999999999999999999 78
Q ss_pred EEccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 441 IVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 441 ~V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
|++|++.+|+. |++||+.+... ...+ ++++.++++..++.+.+. ....+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHHH
Confidence 99999999985 99999976421 0111 345666777776655433 4567899999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999998874 4789999999999875 59999999999998765
No 160
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-36 Score=301.28 Aligned_cols=183 Identities=30% Similarity=0.490 Sum_probs=156.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++||+++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 369999999999999999999999999
Q ss_pred -----eEEEccCCCcccccHHHHhhcCCC--CCCCHHHH----HHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 -----ISIVSQEPVLFNCSIEENIAYGCD--GKASSADI----ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 -----i~~V~Q~~~Lf~gTIreNI~~g~~--~~~~~~~i----~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++|++|++.+|+.|++|||.++.. ...+++++ .++++.+++.+. +++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA-------VKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhCCcccCCHHHHH
Confidence 679999999999999999987531 11244443 344555555432 233455677899999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
|++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877799999999999875 59999999999999999999998
Q ss_pred hc
Q 007337 587 SK 588 (607)
Q Consensus 587 ~~ 588 (607)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 75
No 161
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-36 Score=302.00 Aligned_cols=181 Identities=32% Similarity=0.509 Sum_probs=154.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||| +
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 58999999999753 3469999999999999999999999999 7
Q ss_pred EEEccCCC--cccccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 440 SIVSQEPV--LFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 440 ~~V~Q~~~--Lf~gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+|++|+|. ++..|+++|+.++... ..+ ++++.++++..++.++.. ....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHHH
Confidence 99999985 5567899999886320 112 234667777777765433 23568999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 6899999999999988999999999999999999998765
No 162
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-36 Score=305.92 Aligned_cols=181 Identities=27% Similarity=0.489 Sum_probs=152.8
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc-------------------e----------------
Q 007337 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK-------------------I---------------- 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------i---------------- 439 (607)
|+++|++|+|++.. ..++|+|+||+|++||++||+|+||||| +
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 89999999997531 1359999999999999999999999999 2
Q ss_pred -------------------------EEEccCC--CcccccHHHHhhcCCC-CCCC----HHHHHHHHHHcCch-HHHHhC
Q 007337 440 -------------------------SIVSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAH-DFISNF 486 (607)
Q Consensus 440 -------------------------~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~-~~i~~l 486 (607)
+||+|+| .+|..|++|||.|+.. ...+ ++++.++++.+++. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~--- 159 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL--- 159 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh---
Confidence 6999986 6899999999998731 0122 23466777777764 332
Q ss_pred CccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hh
Q 007337 487 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QS 564 (607)
Q Consensus 487 p~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~ 564 (607)
.....+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.
T Consensus 160 --------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 160 --------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred --------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 24456899999999999999999999999999999999999999999998874 479999999999976 56
Q ss_pred cCEEEEEeCCEEeEecChhHHhhc
Q 007337 565 ADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 565 aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||+|++|++|+|++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998654
No 163
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=6e-36 Score=302.17 Aligned_cols=188 Identities=26% Similarity=0.394 Sum_probs=156.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 369999999999999999999999999
Q ss_pred --eEEEccCCCcccc-cHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 --ISIVSQEPVLFNC-SIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 --i~~V~Q~~~Lf~g-TIreNI~~g~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
++|++|++.+|++ |++||+.++.. ...+. +++.++++..++.+.... ....||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-----------MPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHH
Confidence 6899999999986 99999986421 01222 245556666666543322 3467999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
+||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 6899999999998765 9999999999999999999998
Q ss_pred hcC-CchHHHHH
Q 007337 587 SKG-GVYTALVK 597 (607)
Q Consensus 587 ~~~-g~y~~l~~ 597 (607)
+.. ..++.++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 643 34455554
No 164
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.1e-36 Score=306.68 Aligned_cols=180 Identities=28% Similarity=0.491 Sum_probs=152.8
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------e
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------I 439 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i 439 (607)
..|+++|++++|++ ..+|+||||+|++||++||+||||||| +
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 35999999999963 469999999999999999999999999 8
Q ss_pred EEEccCCCccc-ccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 440 SIVSQEPVLFN-CSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 440 ~~V~Q~~~Lf~-gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
+||||++.+|. .|++||+.+... ...+. +++.++++.+++.+ ..++.+ .+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN-------KADAKV----GELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-------HhcCch----hhCCHHHHHHHHHHH
Confidence 99999999985 799999986321 11222 23445555555543 345554 479999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhc
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||+++|++++|||||++||+.+.+.+.+.|+++. +++|+|++||+++.++. ||+|++|++|++++.|+.+++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47899999999999864 999999999999999999999764
No 165
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-36 Score=299.81 Aligned_cols=183 Identities=34% Similarity=0.513 Sum_probs=155.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999964 369999999999999999999999999
Q ss_pred ----eEEEccCCCcc-cccHHHHhhcCCC-CC--CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ----ISIVSQEPVLF-NCSIEENIAYGCD-GK--AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ----i~~V~Q~~~Lf-~gTIreNI~~g~~-~~--~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+| +.|++||+.++.. .. .+ ++++.++++.+++.+.+.. . ......+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~----~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---R----LDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---h----hcCCcccCCHHHH
Confidence 68999999755 6899999987521 00 11 3456778888887654321 2 2334568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999875 6999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14247 233 FTN 235 (250)
T ss_pred HcC
Confidence 764
No 166
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-36 Score=297.47 Aligned_cols=178 Identities=33% Similarity=0.489 Sum_probs=149.7
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
++++|++++|++ .++|+|+||++++||+++|+|+|||||
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999964 369999999999999999999999999
Q ss_pred ----eEEEccCCCcccc-cHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 ----ISIVSQEPVLFNC-SIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 ----i~~V~Q~~~Lf~g-TIreNI~~g~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++|++|++.+|.+ |++|||.++.. ...+ .+++.++++..++.+++.. ...+|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADR-----------FPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHH
Confidence 3689999999975 99999975310 0112 2334555666665544433 34689999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
|++||||++++|+++||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999999875 3799999999999986 5999999999999999999987
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 643
No 167
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.1e-36 Score=297.53 Aligned_cols=178 Identities=33% Similarity=0.492 Sum_probs=151.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
++++|++++|++ .++|+|+||++++||+++|+|+|||||
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 369999999999999999999999999
Q ss_pred eEEEccCCCccc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 ISIVSQEPVLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 i~~V~Q~~~Lf~-gTIreNI~~g~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++|++|++.+|. .|++||+.++.. ...+. +++.++++..++.+.+ ......||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERA-----------HHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHH-----------hcChhhcCHHHHHHHHH
Confidence 789999999886 699999987521 01222 2345556655554433 33447899999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||++++|+++||||||++||+++...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998875 4799999999999986 5999999999999999999998764
No 168
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-36 Score=298.72 Aligned_cols=183 Identities=32% Similarity=0.495 Sum_probs=157.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||.++|+|+|||||
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-CCC-C----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|+.|++||+.++.. ... + ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 689999999999999999987521 011 1 2346678888877554432 23456778999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+|+|||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777999999999998764 999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 754
No 169
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=6.6e-36 Score=283.22 Aligned_cols=143 Identities=38% Similarity=0.714 Sum_probs=133.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
|+++|++++|+.. +.++|+|+||+|++||+++|+|+||||| ++|
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEE
Confidence 5789999999753 2469999999999999999999999999 789
Q ss_pred EccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCE
Q 007337 442 VSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 521 (607)
Q Consensus 442 V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~I 521 (607)
++|++++|+.|++||| ..+||||||||++||||++++|++
T Consensus 80 ~~q~~~~~~~tv~~~i----------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 80 LNQRPYLFDTTLRNNL----------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EccCCeeecccHHHhh----------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999998 568999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEec
Q 007337 522 LLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESG 580 (607)
Q Consensus 522 llLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G 580 (607)
+||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999999999999999998765
No 170
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5e-36 Score=292.72 Aligned_cols=168 Identities=33% Similarity=0.557 Sum_probs=142.9
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------eEEEccCC
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------ISIVSQEP 446 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------i~~V~Q~~ 446 (607)
+++|++++|++ .++|+|+||+|++||+++|+||||||| ++||+|++
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 77 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRR 77 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccc
Confidence 46899999964 369999999999999999999999999 78999999
Q ss_pred Cc---ccccHHHHhhcCCCCC---------CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 447 VL---FNCSIEENIAYGCDGK---------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 447 ~L---f~gTIreNI~~g~~~~---------~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
.+ |+.|++|||.++.... ..++++.++++..++.+++.. ...+||||||||++||||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~a 146 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLLARA 146 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHH
Confidence 87 6789999998763210 123457788888888766543 235799999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++| +++.|
T Consensus 147 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 147 LVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999998875 5789999999999886 48999999986 66554
No 171
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.2e-36 Score=296.97 Aligned_cols=178 Identities=36% Similarity=0.554 Sum_probs=156.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|+. .++++|+||+|++||+++|+|+||||| ++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEE
Confidence 478999999974 369999999999999999999999999 7999
Q ss_pred ccCCCcccc-cHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 443 SQEPVLFNC-SIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 443 ~Q~~~Lf~g-TIreNI~~g~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+|++.+|.+ |++||+.++.. ....++++.++++..++.+++...| .+||||||||++||||++
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~laral~ 146 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARALV 146 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHh
Confidence 999999975 99999986521 0112456778888888887766655 589999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.++ .||+|++|++|++++.|+++++.+.
T Consensus 147 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999999999999988754 799999999999875 5999999999999999999998764
No 172
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-36 Score=291.16 Aligned_cols=168 Identities=34% Similarity=0.511 Sum_probs=146.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|++. . .|+||+|++||+++|+||||||| ++|+
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 5789999999642 2 39999999999999999999999 7899
Q ss_pred ccCCCcccc-cHHHHhhcCCCCC-----CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 443 SQEPVLFNC-SIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 443 ~Q~~~Lf~g-TIreNI~~g~~~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+|++.+|.+ |++||+.++.... .+++++.++++.+++.+.....| ..||||||||++||||++
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999999975 9999998763211 13456888999999887766655 379999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEeEec
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 580 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G 580 (607)
++|+++||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999998753 7899999999999865 9999999999998765
No 173
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-36 Score=298.11 Aligned_cols=183 Identities=33% Similarity=0.554 Sum_probs=157.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4899999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-C-CC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-G-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~-~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|+.|++||+.++.. . .. .++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 678999999999999999987521 0 11 2234667777777765442 234566789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999887789999999999976 46999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 233 ~~~ 235 (250)
T PRK14262 233 VER 235 (250)
T ss_pred HhC
Confidence 764
No 174
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-36 Score=300.60 Aligned_cols=186 Identities=27% Similarity=0.415 Sum_probs=157.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||| +
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5999999999963 369999999999999999999999999 7
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 440 SIVSQEPVLFNC-SIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 440 ~~V~Q~~~Lf~g-TIreNI~~g~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
+|++|++.++.+ |++||+.++... ...++++.++++.+++.+++...| .+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHHH
Confidence 899999877654 999999875210 112446788888888876655443 47999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
+||||++.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+.+|+.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 789999999999885 69999999999999999999986
Q ss_pred hcCCchHHHH
Q 007337 587 SKGGVYTALV 596 (607)
Q Consensus 587 ~~~g~y~~l~ 596 (607)
+. ..+..++
T Consensus 237 ~~-~~~~~~~ 245 (265)
T PRK10575 237 RG-ETLEQIY 245 (265)
T ss_pred CH-HHHHHHh
Confidence 53 2334444
No 175
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-35 Score=300.35 Aligned_cols=183 Identities=30% Similarity=0.478 Sum_probs=155.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999974 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-CCCCH-----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-GKASS-----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~~~-----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|..|++|||.++.. ...++ +++.++++..++.+.+ ..........||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-------~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDEL-------KDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchH-------HHHHhcCcccCCHHHH
Confidence 679999999999999999987521 01221 2234455555443322 2334567789999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877899999999999976 5999999999999999999999
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 254 ~~~ 256 (271)
T PRK14238 254 FSN 256 (271)
T ss_pred HcC
Confidence 764
No 176
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9.5e-36 Score=299.07 Aligned_cols=181 Identities=34% Similarity=0.494 Sum_probs=154.2
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
+.|+++|+++.|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999974 369999999999999999999999999
Q ss_pred -------------eEEEccCCCccc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCC
Q 007337 439 -------------ISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERG 498 (607)
Q Consensus 439 -------------i~~V~Q~~~Lf~-gTIreNI~~g~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G 498 (607)
++||+|++.+|+ .|++||+.++.. ...+ ++++.++++..++.+.+. ....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCc
Confidence 289999999997 599999986410 0111 234666677766655431 3456
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 576 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~I 576 (607)
..||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999998875 37999999999999885 999999999999
Q ss_pred eEecChhHHhhc
Q 007337 577 VESGTHEELLSK 588 (607)
Q Consensus 577 ve~G~~~eL~~~ 588 (607)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998754
No 177
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=293.10 Aligned_cols=177 Identities=34% Similarity=0.530 Sum_probs=154.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++||+++|+.. + .|+||+|++||+++|+|+||||| ++|+
T Consensus 2 l~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHHL---P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECCc---c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 7899999999632 2 39999999999999999999999 7899
Q ss_pred ccCCCcccc-cHHHHhhcCCCCC-----CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 443 SQEPVLFNC-SIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 443 ~Q~~~Lf~g-TIreNI~~g~~~~-----~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+|++.+|.+ |++|||.++.... .+++++.++++..++.+.+...| ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 999999985 9999998752101 12456888999999988777665 379999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 99999999999999999999999999988753 789999999999876 59999999999999999999987654
No 178
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=306.44 Aligned_cols=192 Identities=33% Similarity=0.445 Sum_probs=156.3
Q ss_pred cEEEEeEEEECCCCC-------CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------
Q 007337 396 EVELDDVWFAYPSRP-------NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-------~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------ 438 (607)
-|+++|++++|+... ...+|+||||+|++||++||||+|||||
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997421 2468999999999999999999999999
Q ss_pred ---------eEEEccCCC--ccc-ccHHHHhhcC-----C-CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCC
Q 007337 439 ---------ISIVSQEPV--LFN-CSIEENIAYG-----C-DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500 (607)
Q Consensus 439 ---------i~~V~Q~~~--Lf~-gTIreNI~~g-----~-~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~ 500 (607)
|+||+|+|. |++ -|+.+|+... . ......+++.++++.+++.+. .++. ....
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~------~~~~----~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPE------HYDR----YPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChH------HhcC----CCcc
Confidence 899999984 544 5899998631 0 101123457778888887532 2232 3467
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEe
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 577 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Iv 577 (607)
||||||||++|||||+.+|++||+|||||+||..+.+.|.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988754 789999999999997 59999999999999
Q ss_pred EecChhHHhhc-CCch-HHHHH
Q 007337 578 ESGTHEELLSK-GGVY-TALVK 597 (607)
Q Consensus 578 e~G~~~eL~~~-~g~y-~~l~~ 597 (607)
|.|+.+++.++ ...| +.++.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EECCHHHHhcCCCCHHHHHHHH
Confidence 99999999875 2334 44554
No 179
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.6e-36 Score=294.07 Aligned_cols=175 Identities=28% Similarity=0.440 Sum_probs=149.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
.|+++|++++|++ .++++|+||+|++||+++|+||||||| +
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5999999999963 369999999999999999999999999 7
Q ss_pred EEEccCCCcccccHHHHhhcCC---CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 440 SIVSQEPVLFNCSIEENIAYGC---DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 440 ~~V~Q~~~Lf~gTIreNI~~g~---~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+|++|++.+|+.|++||+.++. ....+++++.++++..++.+ +.......+||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 8999999999999999998641 11112344556666666532 2234556789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEe-CCEEeEecChh
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVS-DGEIVESGTHE 583 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~-~G~Ive~G~~~ 583 (607)
++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.++.||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 789999999999999999999995 67778899995
No 180
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-35 Score=298.58 Aligned_cols=183 Identities=31% Similarity=0.494 Sum_probs=158.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++||+++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999964 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCCC-CC---CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCDG-KA---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~~-~~---~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++|++|++.+|+.|++|||.++... .. .++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 5789999999999999999886320 11 13456677888887665532 2355677899999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh-hhcCEEEEEe---------CCEEeE
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVS---------DGEIVE 578 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l-~~aD~Iivl~---------~G~Ive 578 (607)
++||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+ ..||+|++|+ +|+|++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 999999999999999999999999999999999999987778999999999986 5689999998 899999
Q ss_pred ecChhHHhhc
Q 007337 579 SGTHEELLSK 588 (607)
Q Consensus 579 ~G~~~eL~~~ 588 (607)
.|+++|+.+.
T Consensus 240 ~~~~~~~~~~ 249 (264)
T PRK14243 240 FDRTEKIFNS 249 (264)
T ss_pred eCCHHHHHhC
Confidence 9999999764
No 181
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.5e-36 Score=296.62 Aligned_cols=176 Identities=31% Similarity=0.496 Sum_probs=147.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------e
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------I 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------i 439 (607)
|+++||+++|++ .++|+|+||++++||+++|+|+||||| +
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999974 369999999999999999999999999 7
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCC-CCCH-HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 440 SIVSQEPVLFNC-SIEENIAYGCDG-KASS-ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 440 ~~V~Q~~~Lf~g-TIreNI~~g~~~-~~~~-~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+|++|++.+|+. |++||+.++... ..++ +...++++..+ +++.........||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 899999999986 999999876321 1111 22233333322 2223344556789999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL 585 (607)
++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999999998754 7899999999999885 999999999999999999987
No 182
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=300.98 Aligned_cols=179 Identities=40% Similarity=0.615 Sum_probs=153.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|+. ..++++|+||+|++||+++|+|+|||||
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2369999999999999999999999999
Q ss_pred eEEEccCC--CcccccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 ISIVSQEP--VLFNCSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 i~~V~Q~~--~Lf~gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
|+|++|+| .+|+.|++|||.++... ..+ .+++.++++.+++.++... ....|||||+||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-----------PPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-----------ChhhCCHHHHHHHHH
Confidence 78999997 57899999999875310 122 2346677777777543322 245799999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998753 789999999999886 5999999999999999999998753
No 183
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-35 Score=300.16 Aligned_cols=184 Identities=30% Similarity=0.527 Sum_probs=157.1
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 45999999999964 369999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCC----CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCD----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++||+|++.+|+.|++|||.++.. ....+++++++++..++.+.+.. .+.....+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 468999999999999999987521 01124567788888877544432 234567789999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEE-EEeCCEEeEecChhHH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVA-VVSDGEIVESGTHEEL 585 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Ii-vl~~G~Ive~G~~~eL 585 (607)
|++|||||+++|+|||||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999765 99975 5799999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 754
No 184
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=297.83 Aligned_cols=194 Identities=28% Similarity=0.462 Sum_probs=161.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++||+++|++ .++|+|+||++++||+++|+|+|||||
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 369999999999999999999999999
Q ss_pred -------eEEEccCCCccc-ccHHHHhhcCCCC-------------CCCHHHHHHHHHHcCchHHHHhCCccccccccCC
Q 007337 439 -------ISIVSQEPVLFN-CSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGER 497 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~-gTIreNI~~g~~~-------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~ 497 (607)
++|++|++.+|. .|++||+.++... ...++++.++++..++.+.+. ..
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAH-----------QR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHh-----------CC
Confidence 378999999887 5999999875310 011335677777777765443 24
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCC
Q 007337 498 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDG 574 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G 574 (607)
...||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 467999999999999999999999999999999999999999999998753 78999999999975 569999999999
Q ss_pred EEeEecChhHHhhcCCchHHHHHHhhcCCCC
Q 007337 575 EIVESGTHEELLSKGGVYTALVKRQLQEPKT 605 (607)
Q Consensus 575 ~Ive~G~~~eL~~~~g~y~~l~~~~~~~~~~ 605 (607)
++++.|+++++ ......+++.....++++
T Consensus 230 ~i~~~g~~~~~--~~~~~~~~~~~~~~~~~~ 258 (262)
T PRK09984 230 HVFYDGSSQQF--DNERFDHLYRSINRVEEN 258 (262)
T ss_pred EEEEeCCHHHh--ccHHHHHHHhhhhccccc
Confidence 99999999997 334567777666555443
No 185
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=297.65 Aligned_cols=186 Identities=27% Similarity=0.497 Sum_probs=157.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
++++|++++|++ .++|+|+||++++||+++|+|+||||| ++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 369999999999999999999999999 89
Q ss_pred EEccCCCcccc-cHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 441 IVSQEPVLFNC-SIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 441 ~V~Q~~~Lf~g-TIreNI~~g~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
|++|++.+|.+ |++||+.++... ...++++.++++..++.+.... ....||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR-----------RLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcC-----------CcccCCHHHHHHHH
Confidence 99999999876 999999986210 1123456777888777655433 35689999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||||++++|+++||||||++||+++...+.+.|+++. +++|+|++||+++.++ .||+|++|++|++++.|+.+++.+.
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 228 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP 228 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH
Confidence 9999999999999999999999999999999998864 4789999999999875 6999999999999999999998653
Q ss_pred CCchHHHHH
Q 007337 589 GGVYTALVK 597 (607)
Q Consensus 589 ~g~y~~l~~ 597 (607)
..+.+.+.
T Consensus 229 -~~~~~~~~ 236 (255)
T PRK11231 229 -GLLRTVFD 236 (255)
T ss_pred -HHHHHHhC
Confidence 34455553
No 186
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=300.71 Aligned_cols=178 Identities=31% Similarity=0.536 Sum_probs=151.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 369999999999999999999999999
Q ss_pred eEEEccCCC--cccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 ISIVSQEPV--LFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 i~~V~Q~~~--Lf~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++||+|++. +|..|+.||+.++.. ...+. +++.++++..++.++.. .....||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 789999985 678899999987411 01222 34556777777765432 2356899999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||||+.+|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998874 4789999999999985 5999999999999999999988654
No 187
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1.8e-35 Score=298.24 Aligned_cols=190 Identities=31% Similarity=0.417 Sum_probs=155.1
Q ss_pred EEEEeEEEECCCC------CCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------
Q 007337 397 VELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~------~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------- 438 (607)
|+++||+|+|+.. .+.++|+|+||+|++||+++|+|+|||||
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 13469999999999999999999999999
Q ss_pred -------eEEEccCCC--cc-cccHHHHhhcCCC--CCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCC
Q 007337 439 -------ISIVSQEPV--LF-NCSIEENIAYGCD--GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 439 -------i~~V~Q~~~--Lf-~gTIreNI~~g~~--~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
++||+|+|. ++ ..|++|||.+... ... .++++.++++..++.+. ........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSE----------DADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChh----------hhhCChhhCC
Confidence 799999983 43 4799999965310 011 23445666666665321 1234567899
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEe
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVES 579 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~ 579 (607)
||||||++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998754 789999999999987 5999999999999999
Q ss_pred cChhHHhhcCC-chHHHH
Q 007337 580 GTHEELLSKGG-VYTALV 596 (607)
Q Consensus 580 G~~~eL~~~~g-~y~~l~ 596 (607)
|+++++..... .++.+.
T Consensus 233 g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred CCHHHHcCCCCHHHHHHH
Confidence 99999987433 444444
No 188
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=302.34 Aligned_cols=183 Identities=31% Similarity=0.535 Sum_probs=150.0
Q ss_pred CcEEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------
Q 007337 395 GEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------- 438 (607)
+.|+++|++++|++.. ..++|+|+||+|++||+++|+|+|||||
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997531 1359999999999999999999999999
Q ss_pred -------eEEEccCC--CcccccHHHHhhcCCC-CCCCHHH----HHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 -------ISIVSQEP--VLFNCSIEENIAYGCD-GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 -------i~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++||+|+| .+|+.|++|||.++.. ...+.++ +.++++..++ |.++ .......||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~---~~~~~~~LS~G 154 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQL-------PEDY---VKRSPFELSGG 154 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------ChhH---hcCChhhCCHH
Confidence 47999998 4788999999988631 0122222 3334444443 2221 23456789999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecC
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 581 (607)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 234 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 78999999999986 4699999999999999999
Q ss_pred hhHHhh
Q 007337 582 HEELLS 587 (607)
Q Consensus 582 ~~eL~~ 587 (607)
++++.+
T Consensus 235 ~~~~~~ 240 (289)
T PRK13645 235 PFEIFS 240 (289)
T ss_pred HHHHhc
Confidence 988754
No 189
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=297.94 Aligned_cols=184 Identities=32% Similarity=0.494 Sum_probs=156.6
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 46999999999964 369999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCCC-CC---CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCDG-KA---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~~-~~---~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++||+|++.+|..|++||+.++... .. .++++.++++.+++.+.+ +.........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 4689999999999999999986320 11 134566677777664432 23345566789999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh-hhcCEEEEEeC-----------CE
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSD-----------GE 575 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l-~~aD~Iivl~~-----------G~ 575 (607)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ ..||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 9999999999999999999999999999999999999887779999999999887 46999999996 67
Q ss_pred EeEecChhHHhhc
Q 007337 576 IVESGTHEELLSK 588 (607)
Q Consensus 576 Ive~G~~~eL~~~ 588 (607)
|++.|+.+++.+.
T Consensus 242 ~~~~~~~~~~~~~ 254 (269)
T PRK14259 242 LVEFNETKKIFNS 254 (269)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999764
No 190
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7.8e-36 Score=291.67 Aligned_cols=167 Identities=32% Similarity=0.527 Sum_probs=143.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++. .++|+|+||++++||+++|+|+|||||
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 369999999999999999999999999
Q ss_pred -eEEEccCCCccc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 -ISIVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 -i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++||+|++.+|. .|++||+.++.. ... .++++.++++..++.+.....| .+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hhcCHHHHHHHHH
Confidence 789999999998 599999987521 011 2345677888888766554433 4799999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 576 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~I 576 (607)
|||++++|+++|||||||+||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47999999999999875 899999999974
No 191
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=296.41 Aligned_cols=183 Identities=31% Similarity=0.530 Sum_probs=158.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++||+++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-CC-CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-GK-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~~-~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|+||++.+|+.|++|||.++.. .. .+ ++++.++++.+++.+++..+ +......||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHH
Confidence 689999999999999999987521 01 12 24467788888887765432 3455778999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998765 899999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
...
T Consensus 233 ~~~ 235 (250)
T PRK14266 233 FIN 235 (250)
T ss_pred HhC
Confidence 754
No 192
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.7e-35 Score=292.14 Aligned_cols=173 Identities=28% Similarity=0.428 Sum_probs=148.8
Q ss_pred cEEEEeEEEECCCCCC-CcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~-~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
.|+++|++++|++... .++|+|+||+|++||+++|+|+|||||
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 5899999999975311 359999999999999999999999999
Q ss_pred ----eEEEccCCCcccc-cHHHHhhcCC-----CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ----ISIVSQEPVLFNC-SIEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ----i~~V~Q~~~Lf~g-TIreNI~~g~-----~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++|++|++.+|.. |++|||.++. +....++++.++++..++.+.+...| ..||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHHH
Confidence 6899999999875 9999998641 00112346778888888877665544 4799999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEe
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~ 579 (607)
++|||||+++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 7899999999999999999999999999864
No 193
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-35 Score=298.47 Aligned_cols=185 Identities=36% Similarity=0.529 Sum_probs=159.9
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
.+.|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 357999999999974 369999999999999999999999999
Q ss_pred ----------eEEEccCCCcccccHHHHhhcCCC-C-----CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCC
Q 007337 439 ----------ISIVSQEPVLFNCSIEENIAYGCD-G-----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 439 ----------i~~V~Q~~~Lf~gTIreNI~~g~~-~-----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
++|++|++.+|++|++|||.++.. . ...++++.++++.+++.+++. +.+......||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCcccCC
Confidence 368999999999999999987521 0 112456777888877754333 34456678999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecC
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 581 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 581 (607)
||||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877789999999999985 699999999999999999
Q ss_pred hhHHhhc
Q 007337 582 HEELLSK 588 (607)
Q Consensus 582 ~~eL~~~ 588 (607)
++++...
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998753
No 194
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-35 Score=294.55 Aligned_cols=182 Identities=30% Similarity=0.450 Sum_probs=148.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4899999999963 369999999999999999999999999
Q ss_pred eEEEccCCCcccc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
++|++|++.+|++ |++||+.++.. ..+.++..+.++ +.++.++...++ .......||||||||++||||+++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~-~~~~~~~~~~~~-----~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~ 154 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGF-FAERDQFQERIK-----WVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRALMS 154 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhh-ccChhHHHHHHH-----HHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHHHh
Confidence 8899999999985 99999988632 122222222211 112222111111 233567899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhh
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
+|+|+||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 155 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 155 QPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 999999999999999999999999998864 479999999999865 5699999999999999999999864
No 195
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2e-35 Score=295.74 Aligned_cols=178 Identities=35% Similarity=0.507 Sum_probs=149.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
++++|++++|++ .++|+|+||+|++|++++|+|+|||||
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCccc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 ------ISIVSQEPVLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~-gTIreNI~~g~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++||+|++.+|+ .|++||+.++.. ...+. +++.++++..++.+ ........|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAG-----------KETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcc-----------hhhCChhhCChHH
Confidence 268999999985 799999986410 01222 23444455544433 2344567899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChh
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 583 (607)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988754 789999999999986 49999999999999999999
Q ss_pred HHhhc
Q 007337 584 ELLSK 588 (607)
Q Consensus 584 eL~~~ 588 (607)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98764
No 196
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=301.28 Aligned_cols=182 Identities=30% Similarity=0.500 Sum_probs=151.1
Q ss_pred EEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 397 VELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
|+++|++++|+... ..++|+|+||+|++|++++|+|+|||||
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 1369999999999999999999999999
Q ss_pred ----eEEEccCC--CcccccHHHHhhcCCC-CCCCHHH----HHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 ----ISIVSQEP--VLFNCSIEENIAYGCD-GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 ----i~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
|+|++|++ .+|+.|++|||.++.. ...+.++ +.++++..++.+. ........|||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~q 152 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQMR 152 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHHH
Confidence 57999998 6889999999987521 0123332 3445555555321 123456789999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
|++||||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999988743 789999999999885 5999999999999999999988
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 233 ~~~ 235 (280)
T PRK13649 233 FQD 235 (280)
T ss_pred hcC
Confidence 654
No 197
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.6e-35 Score=304.01 Aligned_cols=179 Identities=29% Similarity=0.481 Sum_probs=150.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------IS 440 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~ 440 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||| ++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 4899999999963 369999999999999999999999999 89
Q ss_pred EEccCCCccc-ccHHHHhhcCCC-CCCCHH----HHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 441 IVSQEPVLFN-CSIEENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 441 ~V~Q~~~Lf~-gTIreNI~~g~~-~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
|++|++.+|. .|++||+.+... ...+.+ ++.++++..++.+ ..++.+ ..||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-------~~~~~~----~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES-------KADVRV----ALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChh-------HhcCch----hhCCHHHHHHHHHHHH
Confidence 9999999984 799999975311 112322 3444555555433 334333 5799999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|+++|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998874 4789999999999886 5999999999999999999998754
No 198
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=297.71 Aligned_cols=183 Identities=34% Similarity=0.553 Sum_probs=157.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5999999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-----CCCC-HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-----GKAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-----~~~~-~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|+.|++||+.++.. .+.+ ++++.++++.+++.+++.. ........||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 568999999999999999987521 0111 2346678888888665432 23456778999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEe-----CCEEeEec
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS-----DGEIVESG 580 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~-----~G~Ive~G 580 (607)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999999999998877799999999999876 599999998 59999999
Q ss_pred ChhHHhhc
Q 007337 581 THEELLSK 588 (607)
Q Consensus 581 ~~~eL~~~ 588 (607)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (259)
T PRK14260 237 VTTQIFSN 244 (259)
T ss_pred CHHHHhcC
Confidence 99998754
No 199
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=8e-36 Score=291.53 Aligned_cols=166 Identities=36% Similarity=0.548 Sum_probs=144.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|+. +.++|+|+||+|++||+++|+|+|||||
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 2469999999999999999999999999
Q ss_pred -eEEEccCCCccc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 -ISIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 -i~~V~Q~~~Lf~-gTIreNI~~g~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++|++|+|.+|. .|++||+.++.. ....+++++++++..++.+++...| .+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 689999999995 699999987521 0112456788888888877655544 4799999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCE
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGE 575 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~ 575 (607)
|||++++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999864 47999999999998875 99999999985
No 200
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-35 Score=293.35 Aligned_cols=177 Identities=36% Similarity=0.608 Sum_probs=154.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|++ ++|+|+||+|++||+++|+|+||||| ++|+
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEE
Confidence 578999999963 37999999999999999999999999 7999
Q ss_pred ccCCCccc-ccHHHHhhcCCCC-CC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 443 SQEPVLFN-CSIEENIAYGCDG-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 443 ~Q~~~Lf~-gTIreNI~~g~~~-~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+|++.+|. .|++||+.++... .. .++++.++++..++.+++...| ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~laral~ 145 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ETLSGGEQQRVAIARALV 145 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------ccCCHHHHHHHHHHHHHH
Confidence 99999995 7999999875311 11 2345677888888877665544 579999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhc
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
++|++++|||||++||+.+.+.+.+.|+++.. ++|+|++||++..++. ||+|++|++|++++.|+++++.+.
T Consensus 146 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 146 VNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 99999999999999999999999999998754 7999999999999874 999999999999999999998765
No 201
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.5e-35 Score=296.88 Aligned_cols=178 Identities=35% Similarity=0.497 Sum_probs=151.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------e-------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------I------------- 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------i------------- 439 (607)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||| +
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999964 369999999999999999999999999 2
Q ss_pred ------------EEEccCCCccc-ccHHHHhhcCCC--CCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCC
Q 007337 440 ------------SIVSQEPVLFN-CSIEENIAYGCD--GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500 (607)
Q Consensus 440 ------------~~V~Q~~~Lf~-gTIreNI~~g~~--~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~ 500 (607)
+|++|++.+|. .|++||+.++.. ... .++++.++++..++.+.+.. ....
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADH-----------MPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhc-----------Chhh
Confidence 37899999885 899999987521 011 12346667777766655443 4468
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEe
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 577 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Iv 577 (607)
||||||||++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998753 789999999999985 59999999999999
Q ss_pred EecChhHHhhc
Q 007337 578 ESGTHEELLSK 588 (607)
Q Consensus 578 e~G~~~eL~~~ 588 (607)
+.|+++++.+.
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99999999764
No 202
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-35 Score=305.24 Aligned_cols=193 Identities=25% Similarity=0.403 Sum_probs=154.5
Q ss_pred EEEEeEEEECCCCCC-CcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~-~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
++++|++++|+.... ..+|+||||+|++||++||||+|||||
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999975321 369999999999999999999999999
Q ss_pred -------eEEEccCCC--ccc-ccHHH----HhhcCC--CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCC
Q 007337 439 -------ISIVSQEPV--LFN-CSIEE----NIAYGC--DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 439 -------i~~V~Q~~~--Lf~-gTIre----NI~~g~--~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
|+||+|+|. +++ -|+.+ |+.... .....++++.++++..++.+... .+......||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPAS--------RLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhCCchhCC
Confidence 799999995 332 35554 443321 10112345778888888864211 1335567899
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEe
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVES 579 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~ 579 (607)
||||||++|||||+.+|+++|+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 78999999999998 46999999999999999
Q ss_pred cChhHHhhc-CCch-HHHHH
Q 007337 580 GTHEELLSK-GGVY-TALVK 597 (607)
Q Consensus 580 G~~~eL~~~-~g~y-~~l~~ 597 (607)
|+.+++.++ ...| +.++.
T Consensus 236 g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred CCHHHHhhCCCChHHHHHHH
Confidence 999999875 3344 44544
No 203
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=300.77 Aligned_cols=184 Identities=32% Similarity=0.483 Sum_probs=156.0
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999964 359999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCC-CCC-C----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++||+|++.+|+.|++|||.++.. ... + ++++.++++..++.+.+. .........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS-------DRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh-------hHhhCChhhCCHHH
Confidence 568999999999999999987521 011 1 234556677766643322 12345567899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
|||++|||||+++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877789999999999975 599999999999999999999
Q ss_pred Hhhc
Q 007337 585 LLSK 588 (607)
Q Consensus 585 L~~~ 588 (607)
+.+.
T Consensus 268 ~~~~ 271 (286)
T PRK14275 268 LFTN 271 (286)
T ss_pred HHhC
Confidence 9764
No 204
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-35 Score=295.12 Aligned_cols=178 Identities=32% Similarity=0.489 Sum_probs=153.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||| ++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 369999999999999999999999999 78
Q ss_pred EEccCCCc-ccccHHHHhhcCCCCC-C----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 441 IVSQEPVL-FNCSIEENIAYGCDGK-A----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 441 ~V~Q~~~L-f~gTIreNI~~g~~~~-~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
|++|++.+ ++.|++||+.++.... . .++++.++++..++.++... ....||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGR-----------DYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99999988 6789999998863211 1 13456777887777654433 346899999999999999
Q ss_pred Hh------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 515 LM------MNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 515 ll------~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
|+ .+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 4789999999999886 6999999999999999999998
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 753
No 205
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-35 Score=299.89 Aligned_cols=182 Identities=30% Similarity=0.495 Sum_probs=151.8
Q ss_pred cEEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 396 EVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
.|+++|++++|++.. ..++|+|+||+|++||+++|+|+|||||
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 1469999999999999999999999999
Q ss_pred -----eEEEccCC--CcccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCch-HHHHhCCccccccccCCCCCCChhH
Q 007337 439 -----ISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 -----i~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~-~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++|++|+| .+|+.|++|||.++.. ...+. +++.++++.+++. ++ ......+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~-----------~~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDL-----------ISKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhH-----------hhCCcccCCHHH
Confidence 58999998 5888999999987521 11222 2345566666654 22 233466899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChh
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 583 (607)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999874 4789999999999875 69999999999999999999
Q ss_pred HHhhc
Q 007337 584 ELLSK 588 (607)
Q Consensus 584 eL~~~ 588 (607)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 87653
No 206
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=311.17 Aligned_cols=165 Identities=35% Similarity=0.565 Sum_probs=144.8
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc----------------------------------------eEEEccCCCccc-c
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK----------------------------------------ISIVSQEPVLFN-C 451 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------------i~~V~Q~~~Lf~-g 451 (607)
.+|+|+||+|++||+++|+||||||| ++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999 689999999996 5
Q ss_pred cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEec
Q 007337 452 SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 526 (607)
Q Consensus 452 TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE 526 (607)
|++|||.++.. ...+ ++++.++++.+++.++....| .+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999997521 0111 345778888888877766555 4799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 527 ATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 527 ~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||+||+.+.+.+++.|.++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999998874 4789999999999875 6999999999999999999999865
No 207
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8.3e-36 Score=290.75 Aligned_cols=166 Identities=36% Similarity=0.624 Sum_probs=140.2
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEE
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISI 441 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~ 441 (607)
+++|++++|++. ..++|+|+||+|++||+++|+||||||| ++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999752 2469999999999999999999999999 799
Q ss_pred EccCC--CcccccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 442 VSQEP--VLFNCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 442 V~Q~~--~Lf~gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
++|++ .+++.|++||+.++.. ...+ ++++.++++..++.+++.. ....||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDR-----------SPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcC-----------CcccCCHHHHHHHHHHHH
Confidence 99998 4678999999987521 0122 2345667777777655443 346899999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEeCCE
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVSDGE 575 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~-aD~Iivl~~G~ 575 (607)
++++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999988754 7899999999999987 99999999985
No 208
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-35 Score=296.57 Aligned_cols=178 Identities=23% Similarity=0.381 Sum_probs=149.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|++++|++ .++|+|+||++++||+++|+|+|||||
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999
Q ss_pred eEEEccCCCcccc-cHHHHhhcCCCC--------------CCC------HHHHHHHHHHcCchHHHHhCCccccccccCC
Q 007337 439 ISIVSQEPVLFNC-SIEENIAYGCDG--------------KAS------SADIENAAKMANAHDFISNFPEKYQTFVGER 497 (607)
Q Consensus 439 i~~V~Q~~~Lf~g-TIreNI~~g~~~--------------~~~------~~~i~~al~~a~l~~~i~~lp~G~~T~ige~ 497 (607)
++|++|++.+|.+ |++|||.++... ... .+++.++++.. |++......
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV-----------GLLEHANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC-----------ChhhhhhCC
Confidence 6789999999986 999999985210 000 01233333333 444445566
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCC
Q 007337 498 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDG 574 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~G 574 (607)
..+||||||||++||||++.+|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 788999999999999999999999999999999999999999999988753 6899999999999855 9999999999
Q ss_pred EEeEecChhHHhh
Q 007337 575 EIVESGTHEELLS 587 (607)
Q Consensus 575 ~Ive~G~~~eL~~ 587 (607)
++++.|+.+++..
T Consensus 231 ~i~~~~~~~~~~~ 243 (255)
T PRK11300 231 TPLANGTPEEIRN 243 (255)
T ss_pred eEEecCCHHHHhh
Confidence 9999999998864
No 209
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.1e-35 Score=296.65 Aligned_cols=194 Identities=25% Similarity=0.416 Sum_probs=158.9
Q ss_pred cEEEEeEEEECCCC------CCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------
Q 007337 396 EVELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~------~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------- 438 (607)
-|+++|++++|+.. .+.++|+|+||+|++||+++|+|||||||
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 12469999999999999999999999999
Q ss_pred -----eEEEccCCC--ccc-ccHHHHhhcCCC--CCC----CHHHHHHHHHHcCch-HHHHhCCccccccccCCCCCCCh
Q 007337 439 -----ISIVSQEPV--LFN-CSIEENIAYGCD--GKA----SSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 -----i~~V~Q~~~--Lf~-gTIreNI~~g~~--~~~----~~~~i~~al~~a~l~-~~i~~lp~G~~T~ige~G~~LSG 503 (607)
++|++|++. +++ -|+.+|+.+... ... .++++.++++.+++. +.... ...+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY-----------YPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc-----------CchhcCH
Confidence 789999985 443 489999865310 011 134577888888884 33221 2357999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEEeEec
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESG 580 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G 580 (607)
|||||++||||++++|+|+||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999976 9999999999999999
Q ss_pred ChhHHhhc--CCchHHHHHHhh
Q 007337 581 THEELLSK--GGVYTALVKRQL 600 (607)
Q Consensus 581 ~~~eL~~~--~g~y~~l~~~~~ 600 (607)
+++++.+. ...+++++....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~ 254 (267)
T PRK15112 233 STADVLASPLHELTKRLIAGHF 254 (267)
T ss_pred CHHHHhcCCCCHHHHHHHHhcc
Confidence 99999875 355677776544
No 210
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=307.75 Aligned_cols=175 Identities=31% Similarity=0.496 Sum_probs=153.7
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|++ |++++|++. .+ |+||+|++||+++|+|||||||
T Consensus 2 l~~-~l~k~~~~~----~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGDL----CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCCE----EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 899999632 23 8999999999999999999999
Q ss_pred --eEEEccCCCccc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 439 --ISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 439 --i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
++||+|++.+|+ .|++|||.++.. ..+++++.++++..++.++....| .+||||||||++|||||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~-----------~~LSgGq~qRvalaraL 143 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMA-KSMVAQFDKIVALLGIEPLLDRYP-----------GSLSGGEKQRVAIGRAL 143 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhh-hhhHHHHHHHHHHcCCchhhhCCc-----------ccCCHHHHHHHHHHHHH
Confidence 679999999996 699999998753 345677888999988877665544 58999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++..+.
T Consensus 144 ~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 144 LTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 999999999999999999999999999988754 689999999999775 59999999999999999999998753
No 211
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=295.72 Aligned_cols=179 Identities=25% Similarity=0.408 Sum_probs=154.8
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ ..+|+|+||++++||+++|+|+|||||
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999974 369999999999999999999999999
Q ss_pred eEEEccCCCccc-ccHHHHhhcCCCCC---------CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ISIVSQEPVLFN-CSIEENIAYGCDGK---------ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 i~~V~Q~~~Lf~-gTIreNI~~g~~~~---------~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++|++|++.+|. .|++||+.++.... ..++++.++++..++.++.. .....||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD-----------QSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhc-----------CCcccCChHHHHH
Confidence 799999998874 79999998752101 12345777888888766533 3457899999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHH
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL 585 (607)
++||||++++|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+ ..||+|++|++|++++.|+.+++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 78999999999976 55999999999999999999998
Q ss_pred hh
Q 007337 586 LS 587 (607)
Q Consensus 586 ~~ 587 (607)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 65
No 212
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=295.47 Aligned_cols=183 Identities=33% Similarity=0.517 Sum_probs=155.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|+. .++|+|+||+|++||+++|+|+|||||
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999973 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCC-CCC-C----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCD-GKA-S----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~-~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++.+|+.|++||+.++.. ... . ++++.++++.+++.+.+ .........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 458999999999999999987521 011 1 23455666776665333 2234456678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
||++||||++++|+++||||||++||+++.+.+.+.|+++.+++|+|+|||+++.++ .||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998876789999999999986 5999999999999999999888
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
...
T Consensus 235 ~~~ 237 (252)
T PRK14255 235 FLN 237 (252)
T ss_pred hcC
Confidence 764
No 213
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=296.10 Aligned_cols=184 Identities=33% Similarity=0.569 Sum_probs=157.8
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
+.|+++|++++|++ ..+|+|+||++++||+++|+|+|||||
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 46999999999963 359999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCC-----CCCC-HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCD-----GKAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~-----~~~~-~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++|++|++.+|+.|++||+.++.. ...+ ++++.++++.+++.+++.. ..+.....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHH
Confidence 778999999999999999987421 0111 2346678888887665542 2345678999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeC-----CEEe
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD-----GEIV 577 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~-----G~Iv 577 (607)
|||++||||++++|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998853 4799999999999886 5999999999 9999
Q ss_pred EecChhHHhhc
Q 007337 578 ESGTHEELLSK 588 (607)
Q Consensus 578 e~G~~~eL~~~ 588 (607)
+.|+++++.+.
T Consensus 236 ~~~~~~~~~~~ 246 (261)
T PRK14258 236 EFGLTKKIFNS 246 (261)
T ss_pred EeCCHHHHHhC
Confidence 99999999764
No 214
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-35 Score=295.72 Aligned_cols=184 Identities=33% Similarity=0.492 Sum_probs=158.4
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 19 ~~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 19 SVFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred ceEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 36999999999974 369999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCCC-C---CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCDG-K---ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~~-~---~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++|++|++.+|+.|++|||.++... . ..++++.++++.+++.+.+.. ........|||||||
T Consensus 96 ~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~q 168 (274)
T PRK14265 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQ 168 (274)
T ss_pred hHHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHH
Confidence 5689999999999999999886310 0 123456677888887655432 234556789999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEe---------CCEEe
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS---------DGEIV 577 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~---------~G~Iv 577 (607)
|++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+++
T Consensus 169 rv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~ 248 (274)
T PRK14265 169 RLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLV 248 (274)
T ss_pred HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEE
Confidence 99999999999999999999999999999999999999877899999999999885 699999997 89999
Q ss_pred EecChhHHhhc
Q 007337 578 ESGTHEELLSK 588 (607)
Q Consensus 578 e~G~~~eL~~~ 588 (607)
+.|+.+|+.+.
T Consensus 249 ~~g~~~~~~~~ 259 (274)
T PRK14265 249 EFSPTEQMFGS 259 (274)
T ss_pred EeCCHHHHHhC
Confidence 99999998764
No 215
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-35 Score=287.34 Aligned_cols=170 Identities=26% Similarity=0.449 Sum_probs=143.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------eEEEcc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------ISIVSQ 444 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------i~~V~Q 444 (607)
++++|++++|++ .++|+|+||++++||+++|+|+||||| ++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 578999999963 369999999999999999999999999 789999
Q ss_pred CCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC
Q 007337 445 EPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 518 (607)
Q Consensus 445 ~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~ 518 (607)
++.+|.+ |++||+.++.. ...+ ++++.++++..++.+.+ .....+||||||||++||||++.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9999875 99999987521 0111 23455666666655443 344568999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998864 4689999999999885 59999999999998765
No 216
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.8e-35 Score=295.47 Aligned_cols=177 Identities=29% Similarity=0.476 Sum_probs=151.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
++++|++++|++ .++|+|+||+|++||+++|+|+||||| ++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999964 369999999999999999999999999 78
Q ss_pred EEccCCC-cccccHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 441 IVSQEPV-LFNCSIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 441 ~V~Q~~~-Lf~gTIreNI~~g~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
|++|++. .+..|++||+.++... ..+++++.++++.+++.+... .....||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLAD-----------RDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHH
Confidence 9999985 4678999999886310 011235677777777755432 245689999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhh
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
||||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999998753 68999999999999 5699999999999999999999865
No 217
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-35 Score=300.97 Aligned_cols=184 Identities=32% Similarity=0.537 Sum_probs=157.5
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35999999999974 369999999999999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCCCC------------------CCCHHHHHHHHHHcCchHHHHhCCcccccc
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGCDG------------------KASSADIENAAKMANAHDFISNFPEKYQTF 493 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~~~------------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ 493 (607)
++||+|++.+|++|++|||.++... +..++++.++++.+++.++ +++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE-------VNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh-------hhHH
Confidence 4699999999999999999975210 0113446667777666443 3445
Q ss_pred ccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEE-EEE
Q 007337 494 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTV-AVV 571 (607)
Q Consensus 494 ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~I-ivl 571 (607)
+.....+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+| ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 5677889999999999999999999999999999999999999999999999877899999999999976 59997 578
Q ss_pred eCCEEeEecChhHHhhc
Q 007337 572 SDGEIVESGTHEELLSK 588 (607)
Q Consensus 572 ~~G~Ive~G~~~eL~~~ 588 (607)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999998754
No 218
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=294.83 Aligned_cols=183 Identities=32% Similarity=0.456 Sum_probs=160.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.+.+++.+++|.+ .++|+|+||+|++||+++|+|+|||||
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999963 469999999999999999999999999
Q ss_pred ------eEEEccCCCcccccHHHHhhcCCCC----CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ------ISIVSQEPVLFNCSIEENIAYGCDG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~gTIreNI~~g~~~----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++|++|++.+|+.|++|||.++... ...++++.++++.+++.+.+.. ..++...+|||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 7899999999999999999986310 1123568888999988766543 2346678999999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEe--------CCEEeEe
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS--------DGEIVES 579 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~--------~G~Ive~ 579 (607)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 9999999999999999999999999999999999999877789999999999875 599999996 8999999
Q ss_pred cChhHHhhc
Q 007337 580 GTHEELLSK 588 (607)
Q Consensus 580 G~~~eL~~~ 588 (607)
|+++++.+.
T Consensus 238 g~~~~~~~~ 246 (261)
T PRK14263 238 GPTAQIFQN 246 (261)
T ss_pred CCHHHHHhC
Confidence 999999864
No 219
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.7e-35 Score=304.30 Aligned_cols=194 Identities=25% Similarity=0.436 Sum_probs=154.4
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
-++++|++++|+... ..++++|+||+|++||++||||+|||||
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996421 2468999999999999999999999999
Q ss_pred -------eEEEccCCC--ccc-ccHHHHhhcCC--CCCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCC
Q 007337 439 -------ISIVSQEPV--LFN-CSIEENIAYGC--DGKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 439 -------i~~V~Q~~~--Lf~-gTIreNI~~g~--~~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
|+||+|+|. +++ -|+.+||.... ....+. +++.++++.+++ |++++ .++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CChHH-HhcCCcccCC
Confidence 799999983 443 57777764310 001232 234445555444 43332 3566778999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEe
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVES 579 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~ 579 (607)
||||||++|||||+.+|+++|+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 789999999999986 5999999999999999
Q ss_pred cChhHHhhc-CCchH-HHHH
Q 007337 580 GTHEELLSK-GGVYT-ALVK 597 (607)
Q Consensus 580 G~~~eL~~~-~g~y~-~l~~ 597 (607)
|+.+++.+. ...|. .|+.
T Consensus 244 g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred CCHHHHHhCCCCHHHHHHHH
Confidence 999999874 33454 4554
No 220
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.4e-35 Score=301.11 Aligned_cols=178 Identities=22% Similarity=0.423 Sum_probs=153.7
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
++++|++++|++ ..+|+|+||+|++||.+||+||+|||| ++|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEE
Confidence 789999999963 469999999999999999999999999 899
Q ss_pred EccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
+||++.+|.+ |++||+.+... ...+ .+++.++++..++.+. ......+||||||||++||||+
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE-----------QHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCchhhCCHHHHHHHHHHHHH
Confidence 9999999976 99999976321 0112 2345566666665544 3344578999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998778999999999998765 999999999999999999998764
No 221
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.3e-35 Score=306.56 Aligned_cols=171 Identities=30% Similarity=0.504 Sum_probs=147.2
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------------eEEEccCCC
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------------------ISIVSQEPV 447 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------------------i~~V~Q~~~ 447 (607)
..+|+|+||+|++||+++|+|+||||| ++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 357999999999999999999999999 789999999
Q ss_pred ccc-ccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCE
Q 007337 448 LFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 521 (607)
Q Consensus 448 Lf~-gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~I 521 (607)
+|+ .|++||+.++... ..+ +++..++++..++.++....| .+||||||||++|||||+++|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 7999999986310 112 245677888888876654433 46999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc-CCchH
Q 007337 522 LLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK-GGVYT 593 (607)
Q Consensus 522 llLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~ 593 (607)
||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.+ ...|.
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 999999999999999999999988754 78999999999986 66999999999999999999999865 34444
No 222
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-35 Score=291.43 Aligned_cols=183 Identities=30% Similarity=0.504 Sum_probs=149.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3889999999963 369999999999999999999999999
Q ss_pred eEEEccCCCccc-ccHHHHhhcCCCC--CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 439 ISIVSQEPVLFN-CSIEENIAYGCDG--KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 439 i~~V~Q~~~Lf~-gTIreNI~~g~~~--~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
++|++|++.+|+ .|++||+.++... ..+.++.++ .+.+.++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----RANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----HHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 889999999987 5999999875210 122221111 112233333 344444556788999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999998764 478999999999766 56999999999999999999998753
No 223
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.5e-35 Score=285.83 Aligned_cols=169 Identities=37% Similarity=0.581 Sum_probs=147.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
++++|++++|+. .++|+||++++||.++|+|+||||| ++||
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEE
Confidence 368999999962 4679999999999999999999999 7899
Q ss_pred ccCCCcccc-cHHHHhhcCC-CC----CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 443 SQEPVLFNC-SIEENIAYGC-DG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 443 ~Q~~~Lf~g-TIreNI~~g~-~~----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
+|+|.+|.+ |++||+.++. +. ..+++++.++++..++.+.....|. +||||||||++||||++
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~LS~G~~qrl~laral~ 144 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------QLSGGQRQRVALARCLV 144 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------cCCHHHHHHHHHHHHHh
Confidence 999999974 9999998642 10 1134567888999998877666653 79999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecC
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 581 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 581 (607)
++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|.
T Consensus 145 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 145 RPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 99999999999999999999999999998753 789999999999876 599999999999999874
No 224
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-35 Score=293.55 Aligned_cols=184 Identities=30% Similarity=0.508 Sum_probs=157.2
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ .++|+|+||++++||+++|+|++||||
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35999999999964 369999999999999999999999999
Q ss_pred ------eEEEccCCCcccc-cHHHHhhcCCCC-CC-CH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 ------ISIVSQEPVLFNC-SIEENIAYGCDG-KA-SS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~g-TIreNI~~g~~~-~~-~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++|++|+|.+|.+ |++|||.++... .. ++ +++.++++..++.+.+. .........|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHH
Confidence 7899999999975 999999975210 11 22 23556677777754331 12345677899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhH
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~e 584 (607)
|||++||||++++|+++||||||++||+.++..+.+.|.++.+++|+|+|||+++.+ ..||++++|++|++++.|+++|
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999999887789999999999998 5699999999999999999999
Q ss_pred Hhhc
Q 007337 585 LLSK 588 (607)
Q Consensus 585 L~~~ 588 (607)
+.+.
T Consensus 239 ~~~~ 242 (257)
T PRK14246 239 IFTS 242 (257)
T ss_pred HHhC
Confidence 9865
No 225
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-35 Score=294.16 Aligned_cols=183 Identities=33% Similarity=0.527 Sum_probs=152.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-++++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 4789999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCCccc-ccHHHHhhcCCC-CCC-CHHH----HHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 ------ISIVSQEPVLFN-CSIEENIAYGCD-GKA-SSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~-~~~~----i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++|++|++.+|+ .|++||+.++.. ... .+++ ..+.++..++.+.+ ++..+ ....+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~----~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEV---KDRLK----TPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhh---hhhhc----CCcccCCHHH
Confidence 569999999998 599999986521 011 2332 33334445444332 22333 3456899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhH
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~e 584 (607)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988778999999999999875 99999999999999999999
Q ss_pred Hhhc
Q 007337 585 LLSK 588 (607)
Q Consensus 585 L~~~ 588 (607)
+.+.
T Consensus 234 ~~~~ 237 (252)
T PRK14272 234 LFTN 237 (252)
T ss_pred HHhC
Confidence 9765
No 226
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-35 Score=295.15 Aligned_cols=183 Identities=32% Similarity=0.523 Sum_probs=154.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999974 369999999999999999999999999
Q ss_pred ------eEEEccCCCccc-ccHHHHhhcCCC--CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 ------ISIVSQEPVLFN-CSIEENIAYGCD--GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~-gTIreNI~~g~~--~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++|++|++.+|+ .|++||+.++.. ...+ ++++.++++..++.+.+. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 468899999987 599999986421 0111 234566777777754332 22345567899999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEe------CCEEeE
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS------DGEIVE 578 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~------~G~Ive 578 (607)
|||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999998877799999999999875 699999996 899999
Q ss_pred ecChhHHhhc
Q 007337 579 SGTHEELLSK 588 (607)
Q Consensus 579 ~G~~~eL~~~ 588 (607)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998764
No 227
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=7.8e-35 Score=290.36 Aligned_cols=183 Identities=31% Similarity=0.463 Sum_probs=158.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCccc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFN 450 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~ 450 (607)
-++++|++++|++ .++|+|+||+|++||+++|+|+||||| ++|++|++.++.
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~ 80 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDT 80 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEecccccccc
Confidence 4899999999974 369999999999999999999999999 899999998865
Q ss_pred ---ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEecc
Q 007337 451 ---CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 527 (607)
Q Consensus 451 ---gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~ 527 (607)
.|+++|+.+. + ..+++++.++++.+++.+.+.. ....||||||||++||||++++|+++|||||
T Consensus 81 ~l~~~~~~~~~~~-~-~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~laral~~~p~lllLDEP 147 (251)
T PRK09544 81 TLPLTVNRFLRLR-P-GTKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARALLNRPQLLVLDEP 147 (251)
T ss_pred ccChhHHHHHhcc-c-cccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4899998765 2 3567788999999998876543 2467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhcCCchHHHH
Q 007337 528 TSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKGGVYTALV 596 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 596 (607)
|++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++ +|++.|+++++.+ .+.|.+++
T Consensus 148 t~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~-~~~~~~~~ 217 (251)
T PRK09544 148 TQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL-HPEFISMF 217 (251)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC-CHHHHHHh
Confidence 999999999999999988753 789999999999985 5999999965 7999999999864 44555555
No 228
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-35 Score=302.73 Aligned_cols=194 Identities=24% Similarity=0.359 Sum_probs=157.0
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
-|+++|++++|+... ...+|+||||+|++||+++|+|+|||||
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 379999999996421 2469999999999999999999999999
Q ss_pred --------eEEEccCCCc--c-cccHHHHhhcCC----C-C----C--CCHHHHHHHHHHcCchHHHHhCCccccccccC
Q 007337 439 --------ISIVSQEPVL--F-NCSIEENIAYGC----D-G----K--ASSADIENAAKMANAHDFISNFPEKYQTFVGE 496 (607)
Q Consensus 439 --------i~~V~Q~~~L--f-~gTIreNI~~g~----~-~----~--~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige 496 (607)
|+||+|+|.. + .-||.+|+.... . . . ..++++.++++..++.+.-. ....
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~ 154 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRS 154 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhC
Confidence 7899999973 2 468999986420 0 0 0 01345778888888864211 1123
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeC
Q 007337 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSD 573 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~ 573 (607)
....||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++
T Consensus 155 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~ 234 (330)
T PRK15093 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC 234 (330)
T ss_pred CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 3468999999999999999999999999999999999999999999998754 789999999999995 5999999999
Q ss_pred CEEeEecChhHHhhc-CCchHH-HHH
Q 007337 574 GEIVESGTHEELLSK-GGVYTA-LVK 597 (607)
Q Consensus 574 G~Ive~G~~~eL~~~-~g~y~~-l~~ 597 (607)
|+|+|.|+.+++.+. ...|.+ ++.
T Consensus 235 G~ive~g~~~~i~~~p~~~y~~~ll~ 260 (330)
T PRK15093 235 GQTVETAPSKELVTTPHHPYTQALIR 260 (330)
T ss_pred CEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999999864 345644 444
No 229
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=6.1e-35 Score=286.87 Aligned_cols=168 Identities=30% Similarity=0.432 Sum_probs=142.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|+. +.++|+|+||+|++||+++|+|+|||||
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999953 2469999999999999999999999999
Q ss_pred -eEEEccCCCc-ccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 -ISIVSQEPVL-FNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 -i~~V~Q~~~L-f~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++|++|+|.+ ++.|++|||.++.. ...++ +++.++++..++.+++.. ...+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKN-----------FPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------CchhCCHHHHHHHHH
Confidence 6899999987 57899999987521 01222 245567777777665443 346899999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEe
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV 577 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Iv 577 (607)
|||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999874 46899999999999875 8999999999985
No 230
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.8e-35 Score=287.48 Aligned_cols=166 Identities=38% Similarity=0.542 Sum_probs=140.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++|+|+||++++||+++|+|+|||||
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999974 369999999999999999999999999
Q ss_pred eEEEccCCCccc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 ISIVSQEPVLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 i~~V~Q~~~Lf~-gTIreNI~~g~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++|++|++.+|. .|++||+.++.. ...+. +++.++++..++.+.+.. ...+||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA-----------YPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhh-----------CccccCHHHHHHHHH
Confidence 789999999986 699999987521 01222 345556666666544433 346899999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEE
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEI 576 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~I 576 (607)
|||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+|
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998753 789999999999986 5999999999975
No 231
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=6.6e-35 Score=302.09 Aligned_cols=179 Identities=30% Similarity=0.498 Sum_probs=151.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------IS 440 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~ 440 (607)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||| ++
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 5999999999964 369999999999999999999999999 89
Q ss_pred EEccCCCcc-cccHHHHhhcCCC-CCCCHH----HHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 441 IVSQEPVLF-NCSIEENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 441 ~V~Q~~~Lf-~gTIreNI~~g~~-~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
|+||++.+| ..|++||+.+... ...+.+ ++.++++.+++ ++..++.+ .+||||||||++||||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L-------~~~~~~~~----~~LS~G~kqrv~lA~a 186 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL-------ESKADARV----SDLSGGMKRRLTLARA 186 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------chhhCCCh----hhCCHHHHHHHHHHHH
Confidence 999999986 6799999986321 012222 23444554444 33445544 4799999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|+++|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|+|++.|+.+++.+.
T Consensus 187 L~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 187 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998874 4799999999999985 5999999999999999999999754
No 232
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=6e-35 Score=272.98 Aligned_cols=138 Identities=36% Similarity=0.578 Sum_probs=128.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCcccc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFNC 451 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~g 451 (607)
|+++|++++|++. +++|+|+||+|++||+++|+|+||||| ++|++|++.++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLG 78 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccc
Confidence 5789999999642 469999999999999999999999999 8999999999999
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 007337 452 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531 (607)
Q Consensus 452 TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL 531 (607)
|++|||.++ ....||||||||++||||++++|+++||||||++|
T Consensus 79 tv~~nl~~~------------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~L 122 (166)
T cd03223 79 TLREQLIYP------------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSAL 122 (166)
T ss_pred cHHHHhhcc------------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcccc
Confidence 999999763 24789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 007337 532 DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 574 (607)
Q Consensus 532 D~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G 574 (607)
|+++.+.+.+.|+++ ++|+|+|||+++....||+|++|++|
T Consensus 123 D~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 123 DEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred CHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 999999999999886 69999999999999999999999886
No 233
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=5.2e-35 Score=291.61 Aligned_cols=178 Identities=26% Similarity=0.394 Sum_probs=146.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 369999999999999999999999999
Q ss_pred -eEEEccCCCcccc-cHHHHhhcCCCC--------CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 -ISIVSQEPVLFNC-SIEENIAYGCDG--------KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 -i~~V~Q~~~Lf~g-TIreNI~~g~~~--------~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++||+|++.+|++ |++||+.+.... ..+ ++++.++++..++.+.. .+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cCcCHH
Confidence 6799999999875 899999763110 011 23455566666654221 111111 249999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEeEecC
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESGT 581 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~--aD~Iivl~~G~Ive~G~ 581 (607)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999875 36899999999999976 79999999999999999
Q ss_pred hhHHh
Q 007337 582 HEELL 586 (607)
Q Consensus 582 ~~eL~ 586 (607)
++++.
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98654
No 234
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-35 Score=291.27 Aligned_cols=172 Identities=33% Similarity=0.462 Sum_probs=146.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------eEEEccC
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------ISIVSQE 445 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------i~~V~Q~ 445 (607)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||| ++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 789999999964 369999999999999999999999999 5899999
Q ss_pred CCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 446 PVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 446 ~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
+.+|+ .|++||+.++.. ...+ ++++.++++..++.+... ....+||||||||++||||++++|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 99987 699999987521 0112 234667777777655433 345689999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEe--CCEEeEecCh
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVS--DGEIVESGTH 582 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~--~G~Ive~G~~ 582 (607)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+ +|+|++.++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999998863 3799999999999875 599999998 5999998865
No 235
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6.6e-35 Score=274.96 Aligned_cols=136 Identities=46% Similarity=0.761 Sum_probs=126.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++|++++|++. ..++++|+||+|++||.++|+|+||||| ++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999753 3469999999999999999999999999 78
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 441 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 441 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
|++|++.+|+.|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~q~~~~~~~tv~~~l-------------------------------------------LS~G~~qrv~la~al~~~p~ 116 (173)
T cd03246 80 YLPQDDELFSGSIAENI-------------------------------------------LSGGQRQRLGLARALYGNPR 116 (173)
T ss_pred EECCCCccccCcHHHHC-------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEI 576 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~I 576 (607)
++||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++
T Consensus 117 ~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 117 ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999998875 37899999999999999999999999974
No 236
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.8e-34 Score=284.98 Aligned_cols=174 Identities=36% Similarity=0.524 Sum_probs=140.4
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
|+++||+++|++.. +.++|+|+||+|++||+++|+|||||||
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 1269999999999999999999999999
Q ss_pred --eEEEccCCC--cc-cccHHHHhhcCCC---CCCCHHHHH----HHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 --ISIVSQEPV--LF-NCSIEENIAYGCD---GKASSADIE----NAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 --i~~V~Q~~~--Lf-~gTIreNI~~g~~---~~~~~~~i~----~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++|++|++. ++ ..|++|||.++.. ....+++.. ++++..++. +........+||||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~ 151 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLP----------EEVLNRYPHELSGGQR 151 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCC----------hhHhhCCchhcCHHHH
Confidence 689999993 44 5899999976411 011122211 333443332 1234455678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
||++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 152 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 152 QRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999998754 789999999999987 69999999999998765
No 237
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.3e-34 Score=288.39 Aligned_cols=192 Identities=30% Similarity=0.472 Sum_probs=158.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++| + .++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccc
Confidence 58999999999 2 259999999999999999999999999
Q ss_pred -eEEEccCCC-ccc--ccHHHHhhcCC---CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 -ISIVSQEPV-LFN--CSIEENIAYGC---DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 -i~~V~Q~~~-Lf~--gTIreNI~~g~---~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
++||+|++. .|. .|+.+|+.+.. .....+++++++++.+++.+. ++.++.....||||||||++|
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv~l 151 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRMMI 151 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHHHH
Confidence 779999984 444 58888875410 012345678888888887542 233456678899999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 231 (254)
T PRK10418 152 ALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231 (254)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999999999999999988743 689999999999985 5999999999999999999999765
Q ss_pred C-C-chHHHHHHh
Q 007337 589 G-G-VYTALVKRQ 599 (607)
Q Consensus 589 ~-g-~y~~l~~~~ 599 (607)
. . .++.++..+
T Consensus 232 ~~~~~~~~~~~~~ 244 (254)
T PRK10418 232 PKHAVTRSLVSAH 244 (254)
T ss_pred CCCHHHHHHHHhh
Confidence 3 2 344555544
No 238
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2e-34 Score=283.46 Aligned_cols=174 Identities=27% Similarity=0.427 Sum_probs=151.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------eEEEcc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------ISIVSQ 444 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------i~~V~Q 444 (607)
++++|++++|++ .++|+|+||++++||+++|+|+||||| ++|++|
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 478999999974 369999999999999999999999999 689999
Q ss_pred CCCccc-ccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 007337 445 EPVLFN-CSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRIL 522 (607)
Q Consensus 445 ~~~Lf~-gTIreNI~~g~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~Il 522 (607)
++.+|. .|++||+.++.. ...+++++.++++..++.+.... ....||||||||++||||++++|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999886 699999986421 12346678888888888765433 34679999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 523 LLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 523 lLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999998875 4789999999999885 699999999999999998765
No 239
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.2e-34 Score=292.36 Aligned_cols=188 Identities=30% Similarity=0.428 Sum_probs=153.0
Q ss_pred EEEEeEEEECCCC------CCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------
Q 007337 397 VELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~------~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------- 438 (607)
|+++||+|+|+.. .+.++|+|+||+|++||+++|+|+|||||
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8999999999731 02479999999999999999999999999
Q ss_pred -------eEEEccCCC--cc-cccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHhCCccccc-cccCCCCCC
Q 007337 439 -------ISIVSQEPV--LF-NCSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQT-FVGERGVRL 501 (607)
Q Consensus 439 -------i~~V~Q~~~--Lf-~gTIreNI~~g~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T-~ige~G~~L 501 (607)
++|++|++. ++ ..|++||+.+... ...+. +++.++++.. |+++ ........|
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~L 152 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAV-----------DLDDSVLDKRPPQL 152 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHc-----------CCChhHhhCCCccC
Confidence 889999983 33 5799999865310 01111 2344444444 4442 334567789
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeE
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 578 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive 578 (607)
|||||||++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.++ .||+|++|++|++++
T Consensus 153 S~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999988753 789999999999987 599999999999999
Q ss_pred ecChhHHhhcCCchHHH
Q 007337 579 SGTHEELLSKGGVYTAL 595 (607)
Q Consensus 579 ~G~~~eL~~~~g~y~~l 595 (607)
.|+++|+......|..-
T Consensus 233 ~g~~~~~~~~~~~~~~~ 249 (268)
T PRK10419 233 TQPVGDKLTFSSPAGRV 249 (268)
T ss_pred eCChhhccCCCCHHHHH
Confidence 99999998766655433
No 240
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=7.2e-35 Score=287.06 Aligned_cols=178 Identities=29% Similarity=0.470 Sum_probs=140.2
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
+.|+||+|+|+..+ .+++|+|+||+|++||+++|+||||||| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 57999999997642 3579999999999999999999999999 7
Q ss_pred EEEccCCCcccc-cHHHHhhcCCCC---CCCHHHHHHHHHHcCchH-HHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 440 SIVSQEPVLFNC-SIEENIAYGCDG---KASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 440 ~~V~Q~~~Lf~g-TIreNI~~g~~~---~~~~~~i~~al~~a~l~~-~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
+|++|++.+|++ |++|||.++... ....++.... ..++ .++.+ |+..........||||||||++||||
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~lara 157 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK----RVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQ 157 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHH----HHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHH
Confidence 899999999987 999999875210 1111111100 0111 11111 22222234567899999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCc--hhhhhcCEEEEEeCCEEeEec
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRL--STVQSADTVAVVSDGEIVESG 580 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl--~~l~~aD~Iivl~~G~Ive~G 580 (607)
++++|+++||||||++||+.+...+.+.|+++. +++|+|++||++ ...+.||+|++|++|++++.|
T Consensus 158 l~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998864 478999999998 456789999999999999876
No 241
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2e-34 Score=282.75 Aligned_cols=169 Identities=33% Similarity=0.507 Sum_probs=145.5
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
++++|+++.|++.. +.++|+|+||++++|++++|+|+|||||
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 2469999999999999999999999999
Q ss_pred --eEEEccCCCccc-ccHHHHhhcCCCC--CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 --ISIVSQEPVLFN-CSIEENIAYGCDG--KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 --i~~V~Q~~~Lf~-gTIreNI~~g~~~--~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
++|++|++.+|. .|+.||+.++... ..+ ++++.++++.+++.+++...| .+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hhCCHHHHHHH
Confidence 799999999997 7999999875310 122 234667777777766665554 57999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEE
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEI 576 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~I 576 (607)
+||||++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988763 7999999999998889999999999986
No 242
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.2e-34 Score=297.31 Aligned_cols=166 Identities=27% Similarity=0.438 Sum_probs=142.7
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEEEccCCCcccc-cHHH
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISIVSQEPVLFNC-SIEE 455 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~V~Q~~~Lf~g-TIre 455 (607)
.++|+|+||+|++||++||+||||||| ++|+||++.+|.. |++|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 469999999999999999999999999 8999999999975 9999
Q ss_pred HhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCC
Q 007337 456 NIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 530 (607)
Q Consensus 456 NI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSa 530 (607)
|+.+... ...+ ++++.++++..++.+... ....+||||||||++|||||+++|+++||||||++
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9987421 0112 335667777777754432 23467999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 531 LDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 531 LD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999998874 4689999999999886 5999999999999999999998764
No 243
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=2.3e-34 Score=300.99 Aligned_cols=171 Identities=34% Similarity=0.500 Sum_probs=146.3
Q ss_pred eEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------------eE
Q 007337 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------------IS 440 (607)
Q Consensus 401 ~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------------i~ 440 (607)
|++++|++. .+ |+||+|++||+++|+||||||| ++
T Consensus 4 ~l~~~~~~~----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDF----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCE----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 789999632 34 9999999999999999999999 57
Q ss_pred EEccCCCcccc-cHHHHhhcCCCCCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 441 IVSQEPVLFNC-SIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 441 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
||+|++.+|.. |++||+.++.. ... ++++.++++..++.+.... ....||||||||++|||||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGqkqRvalAraL 146 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMK-RARPSERRISFERVIELLGIGHLLGR-----------LPGRLSGGEKQRVAIGRAL 146 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhh-ccChhHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999999975 99999998642 111 2346677777766554433 3468999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 147 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (354)
T TIGR02142 147 LSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWAS 222 (354)
T ss_pred HcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998754 689999999999875 5999999999999999999998765
No 244
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-34 Score=288.61 Aligned_cols=177 Identities=32% Similarity=0.456 Sum_probs=150.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 789999999963 369999999999999999999999999
Q ss_pred ------eEEEccCCC-cccccHHHHhhcCCCCC------C---CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCC
Q 007337 439 ------ISIVSQEPV-LFNCSIEENIAYGCDGK------A---SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 439 ------i~~V~Q~~~-Lf~gTIreNI~~g~~~~------~---~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
++|++|++. +|+.|++||+.++.... . ++++++++++..++.+ .++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATA-----------LVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHh-----------hhcCCcccCC
Confidence 478999986 57899999998863100 1 1233556666665543 3445667899
Q ss_pred hhHHHHHHHHHHHh---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEE
Q 007337 503 GGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAV 570 (607)
Q Consensus 503 GGQkQRialARAll---------~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iiv 570 (607)
||||||++||||++ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998754 689999999999885 6999999
Q ss_pred EeCCEEeEecChhHHhh
Q 007337 571 VSDGEIVESGTHEELLS 587 (607)
Q Consensus 571 l~~G~Ive~G~~~eL~~ 587 (607)
|++|+|++.|+.+++.+
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999865
No 245
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.9e-34 Score=286.80 Aligned_cols=190 Identities=28% Similarity=0.457 Sum_probs=149.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999974 369999999999999999999999999
Q ss_pred --------eEEEccCCC--cc-cccHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 --------ISIVSQEPV--LF-NCSIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 --------i~~V~Q~~~--Lf-~gTIreNI~~g~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++||+|++. ++ +-|+.|||.+... ...+..+..+. +++.++.++-+ ++.+.....+|||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~-~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRAT-----AGDWLERVEID-AARIDDLPTTFSGGM 156 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHH-----HHHHHHHcCCC-hhHHhCCCccCCHHH
Confidence 368999984 33 3588889864210 01111122111 23344444221 134567778999999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecCh
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 582 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~ 582 (607)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988654 789999999999997 5999999999999999999
Q ss_pred hHHhhcC-CchHH
Q 007337 583 EELLSKG-GVYTA 594 (607)
Q Consensus 583 ~eL~~~~-g~y~~ 594 (607)
+++..+. ..|.+
T Consensus 237 ~~~~~~~~~~~~~ 249 (258)
T PRK11701 237 DQVLDDPQHPYTQ 249 (258)
T ss_pred HHHhcCCCCHHHH
Confidence 9997643 33543
No 246
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-34 Score=287.91 Aligned_cols=178 Identities=29% Similarity=0.452 Sum_probs=149.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIV 442 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V 442 (607)
.|+++|++++|++ +.++|+|+||+|++||+++|+|+||||| ++|+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEe
Confidence 5899999999963 2469999999999999999999999999 7899
Q ss_pred ccCCCc---ccccHHHHhhcCCC---------CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 443 SQEPVL---FNCSIEENIAYGCD---------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 443 ~Q~~~L---f~gTIreNI~~g~~---------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
+|++.+ +..++++|+.++.. ...+++++.++++..++.++.. +. ...||||||||++
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~----~~~LSgG~~qrv~ 152 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------RQ----IGELSGGQKKRVF 152 (272)
T ss_pred ccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------CC----cccCCHHHHHHHH
Confidence 999865 56689999976421 0112345677888888866543 22 3469999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhh
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+++++ +|++++.|+++++.+
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999999999999999999999999999998875 378999999999876 569999777 899999999999864
No 247
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-34 Score=281.66 Aligned_cols=191 Identities=32% Similarity=0.556 Sum_probs=153.0
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
++++|++.+|.... ...+++||||+|++||++||||+|||||
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899998887542 2468999999999999999999999999
Q ss_pred --------eEEEccCCCc-cc--cc----HHHHhhcCCCC---CCCHHHHHHHHHHcCchH---HHHhCCccccccccCC
Q 007337 439 --------ISIVSQEPVL-FN--CS----IEENIAYGCDG---KASSADIENAAKMANAHD---FISNFPEKYQTFVGER 497 (607)
Q Consensus 439 --------i~~V~Q~~~L-f~--gT----IreNI~~g~~~---~~~~~~i~~al~~a~l~~---~i~~lp~G~~T~ige~ 497 (607)
|++|+|||.- || -| +.|-+...... ..-.++..+.++.+++.+ .+.+.|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP---------- 151 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------- 151 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC----------
Confidence 9999999863 22 22 33333322100 011346778888888875 334444
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCC
Q 007337 498 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDG 574 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G 574 (607)
..||||||||+.||-|+..+|+++|-||||+|||..+.++|.+.|+++.+ +.|+|+|||++..+ +.||+|+||.+|
T Consensus 152 -helSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG 230 (316)
T COG0444 152 -HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG 230 (316)
T ss_pred -cccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence 67999999999999999999999999999999999999999999988764 88999999999976 469999999999
Q ss_pred EEeEecChhHHhhc--CCchHHHHHH
Q 007337 575 EIVESGTHEELLSK--GGVYTALVKR 598 (607)
Q Consensus 575 ~Ive~G~~~eL~~~--~g~y~~l~~~ 598 (607)
+|||.|+.+|+.++ ..+.+.|++.
T Consensus 231 ~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 231 RIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred EEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 99999999999975 3444555554
No 248
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-34 Score=272.93 Aligned_cols=150 Identities=27% Similarity=0.435 Sum_probs=132.8
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eE
Q 007337 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------IS 440 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~ 440 (607)
.|+++|++|+|++.. +.++|+|+||++++||+++|+|+||||| ++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 589999999997421 2469999999999999999999999999 68
Q ss_pred EEccCCCcccc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 441 IVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 441 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
|++|++.+|.+ |++||+.++.. ++ +||||||||++||||++++|
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~-----------~~------------------------~LSgGe~qrv~la~al~~~p 127 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSAL-----------LR------------------------GLSVEQRKRLTIGVELAAKP 127 (192)
T ss_pred EecccCccccCCcHHHHHHHHHH-----------Hh------------------------cCCHHHhHHHHHHHHHhcCC
Confidence 99999988875 99999987410 00 89999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEeC-CEEeEec
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSD-GEIVESG 580 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~--l~~aD~Iivl~~-G~Ive~G 580 (607)
+++||||||++||+.+...+.+.|+++. +++|+|+|||+++. ...||+|++|++ |++++.|
T Consensus 128 ~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 128 SILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999998864 37899999999984 577999999999 9999875
No 249
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.6e-33 Score=286.00 Aligned_cols=180 Identities=34% Similarity=0.571 Sum_probs=157.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------IS 440 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~ 440 (607)
.++++|++.+|.. ...+|+||||+|++|+.+|++||||||| +|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 4789999999973 2469999999999999999999999999 89
Q ss_pred EEccCCCcc-cccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 441 IVSQEPVLF-NCSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 441 ~V~Q~~~Lf-~gTIreNI~~g~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
||||+|.++ .-|++||+.|... ....++++.++++..+|.+.- ...-..||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 999999876 6799999988421 012356788899998887621 23456799999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhc
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~-~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|+++|++||||||||+||+.+...+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999998876 3 699999999999887 999999999999999999998654
No 250
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-33 Score=272.56 Aligned_cols=156 Identities=23% Similarity=0.355 Sum_probs=132.7
Q ss_pred cEEEEeEEEECCCC-CCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~-~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
.+.++||+|.|+.. .+.++|+|+||+|++||+++|+|+|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 37899999999853 34579999999999999999999999999
Q ss_pred --eEEEccCCCccc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 439 --ISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 439 --i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
++|++|++.+|. .|++|||.++.. .. ..+....||||||||++||||+
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~---------------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALR--CK---------------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhh--hc---------------------------cccchhhCCHHHHHHHHHHHHH
Confidence 789999998887 599999987621 10 1234467999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccC-chhh-hhcCEEEEEeCCEEeEec
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHR-LSTV-QSADTVAVVSDGEIVESG 580 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHr-l~~l-~~aD~Iivl~~G~Ive~G 580 (607)
+++|+++||||||++||+++++.+.+.|+++.+ +.|+|+++|+ ++.+ +.||+|++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 4677776655 4554 679999999999998765
No 251
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=297.65 Aligned_cols=194 Identities=30% Similarity=0.471 Sum_probs=156.0
Q ss_pred cEEEEeEEEECCCCCC-CcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSRPN-HMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~-~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
-++++|++..|..... ..+++||||+|.+||.+||||+|||||
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999988875522 258999999999999999999999999
Q ss_pred --------eEEEccCCC-cccc--cHHHHhh----cCCC--CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 --------ISIVSQEPV-LFNC--SIEENIA----YGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 --------i~~V~Q~~~-Lf~g--TIreNI~----~g~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
|+||+|+|+ .+|- ||.+-|. .... .+.-.++..+.++.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 999999986 3543 5555543 2211 01123456677788877665443 2234679
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeE
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 578 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive 578 (607)
|||||||+.||+||..+|++||+||||+|||+.++++|.+.|+++. .+.++|+|||.+..+. -||+|+||++|+|||
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876 5789999999999876 599999999999999
Q ss_pred ecChhHHhhc-CCch-HHHHHH
Q 007337 579 SGTHEELLSK-GGVY-TALVKR 598 (607)
Q Consensus 579 ~G~~~eL~~~-~g~y-~~l~~~ 598 (607)
.|+.++++++ .-.| +.|++.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh
Confidence 9999999985 3344 455443
No 252
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.4e-33 Score=280.00 Aligned_cols=178 Identities=24% Similarity=0.413 Sum_probs=145.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|++++|++ .++|+|+||+|++||++||+|+|||||
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4999999999973 369999999999999999999999999
Q ss_pred --eEEEccCCCcccc-cHHHHhhcCCCC--------CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 --ISIVSQEPVLFNC-SIEENIAYGCDG--------KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 --i~~V~Q~~~Lf~g-TIreNI~~g~~~--------~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
++|++|++.+|++ |+++|+.++... +.+ .+++.++++.+++.+.. .+..++ ..|||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~LSg 154 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSF------LSRNVN---EGFSG 154 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhh------hccccc---cCCCH
Confidence 5689999999875 789998764210 011 13345666666654211 122221 14999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEeEec
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESG 580 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~--aD~Iivl~~G~Ive~G 580 (607)
|||||++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998875 47899999999999875 8999999999999999
Q ss_pred ChhHH
Q 007337 581 THEEL 585 (607)
Q Consensus 581 ~~~eL 585 (607)
+++++
T Consensus 235 ~~~~~ 239 (252)
T CHL00131 235 DAELA 239 (252)
T ss_pred Chhhh
Confidence 99843
No 253
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-33 Score=265.61 Aligned_cols=135 Identities=38% Similarity=0.658 Sum_probs=124.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
++++|++++|++ .++|+|+||++++||.++|+|+||||| ++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE
Confidence 478999999974 369999999999999999999999999 689
Q ss_pred EccCCCcccc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 442 VSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
++|++.+|.+ |++||+. ||||||||++||||++++|+
T Consensus 78 ~~q~~~~~~~~tv~~~~~------------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 78 LPEEPSLYENLTVRENLK------------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EecCCccccCCcHHHHhh------------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 9999998876 9999974 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEE
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 576 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~I 576 (607)
++||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999875 3589999999999887 6999999999974
No 254
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-33 Score=264.11 Aligned_cols=135 Identities=57% Similarity=0.923 Sum_probs=125.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++|++++|++. ..++++|+||+|++|+.++|+||+|||| ++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999753 2369999999999999999999999999 78
Q ss_pred EEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 441 IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 441 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
|++|++.+|+.|++||+ ||||||||++||||++++|+
T Consensus 80 ~~~~~~~~~~~t~~e~l-------------------------------------------LS~G~~~rl~la~al~~~p~ 116 (171)
T cd03228 80 YVPQDPFLFSGTIRENI-------------------------------------------LSGGQRQRIAIARALLRDPP 116 (171)
T ss_pred EEcCCchhccchHHHHh-------------------------------------------hCHHHHHHHHHHHHHhcCCC
Confidence 88999888888888887 99999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 575 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~ 575 (607)
++||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||++++|++|+
T Consensus 117 llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 117 ILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999998877899999999999999999999999984
No 255
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.6e-33 Score=280.21 Aligned_cols=177 Identities=27% Similarity=0.425 Sum_probs=137.7
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++|+|+||+|++|++++|+|+|||||
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999974 369999999999999999999999999
Q ss_pred -eEEEccCCCcccc-cHHHHhhc-------CCCCC-CCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 -ISIVSQEPVLFNC-SIEENIAY-------GCDGK-ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 -i~~V~Q~~~Lf~g-TIreNI~~-------g~~~~-~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++|++|++.++.. |..+|+.+ ..... .+. +.+.+.++.. .+|+++.+... ...||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~--~~~LS~G 149 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL-------KMPEDLLTRSV--NVGFSGG 149 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc-------CCChhhcccCC--CCCCCHH
Confidence 6788888877654 44444322 11000 011 1122222222 24444443322 2379999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh--cCEEEEEeCCEEeEecC
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESGT 581 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~--aD~Iivl~~G~Ive~G~ 581 (607)
||||++||||++++|+|+||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~ 229 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999987754 6899999999999987 89999999999999999
Q ss_pred hhHH
Q 007337 582 HEEL 585 (607)
Q Consensus 582 ~~eL 585 (607)
+++.
T Consensus 230 ~~~~ 233 (248)
T PRK09580 230 FTLV 233 (248)
T ss_pred HHHH
Confidence 9865
No 256
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4.8e-34 Score=319.75 Aligned_cols=184 Identities=22% Similarity=0.417 Sum_probs=151.5
Q ss_pred cEEEEeEEEECCCC------CCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------
Q 007337 396 EVELDDVWFAYPSR------PNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~------~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------- 438 (607)
+++|.++. +++.. .++++|+|+|+++++||.+||+|||||||
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~ 95 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHH
Confidence 45666665 44322 14679999999999999999999999999
Q ss_pred -----eEEEccCCCccc-ccHHHHhhcCCC----CCCCHHH----HHHHHHHcCchHHHHhCCccccccccCC--CCCCC
Q 007337 439 -----ISIVSQEPVLFN-CSIEENIAYGCD----GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGER--GVRLS 502 (607)
Q Consensus 439 -----i~~V~Q~~~Lf~-gTIreNI~~g~~----~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~ige~--G~~LS 502 (607)
++||+|++++++ .||+|||.|+.. ...+.++ +.++++..+ |++..||.||+. +..||
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~~LS 168 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALG-------LRKCANTRIGVPGRVKGLS 168 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcC-------chhcCcCccCCCCCCCCcC
Confidence 699999999995 599999987531 1222222 333333333 345679999985 48999
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCch--hhhhcCEEEEEeCCEEeEe
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLS--TVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~--~l~~aD~Iivl~~G~Ive~ 579 (607)
||||||++|||||+++|++++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ ..+.+|+|++|++|+++++
T Consensus 169 gGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~ 248 (617)
T TIGR00955 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYL 248 (617)
T ss_pred cchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEE
Confidence 9999999999999999999999999999999999999999998754 799999999996 4688999999999999999
Q ss_pred cChhHHhh
Q 007337 580 GTHEELLS 587 (607)
Q Consensus 580 G~~~eL~~ 587 (607)
|+++|+.+
T Consensus 249 G~~~~~~~ 256 (617)
T TIGR00955 249 GSPDQAVP 256 (617)
T ss_pred CCHHHHHH
Confidence 99998853
No 257
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=4.6e-33 Score=311.69 Aligned_cols=169 Identities=30% Similarity=0.516 Sum_probs=144.6
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEEccCCCccc-ccHHHH
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIVSQEPVLFN-CSIEEN 456 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V~Q~~~Lf~-gTIreN 456 (607)
+.+|+|+|+++++||++||+||||||| ++||+|++.+|+ .|++||
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~ 160 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRET 160 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHH
Confidence 469999999999999999999999999 799999999995 699999
Q ss_pred hhcCC----CCCCCHHH----HHHHHHHcCchHHHHhCCccccccccCC-CCCCChhHHHHHHHHHHHhcCCCEEEEecc
Q 007337 457 IAYGC----DGKASSAD----IENAAKMANAHDFISNFPEKYQTFVGER-GVRLSGGQKQRVAIARALMMNPRILLLDEA 527 (607)
Q Consensus 457 I~~g~----~~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~ige~-G~~LSGGQkQRialARAll~~~~IllLDE~ 527 (607)
|.+.. +...++++ +.++++..++ ++..||.+|++ ...||||||||++|||||+++|+|++||||
T Consensus 161 l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 161 LVFCSLLRLPKSLTKQEKILVAESVISELGL-------TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 98752 21234433 3344444443 34568999864 778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEeCCEEeEecChhHHhh
Q 007337 528 TSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~--l~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
||+||+.++..+.+.|+++. +++|+|+++|+++. .+.+|+|++|++|+++..|+++++.+
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 99999999999999999875 58999999999984 57799999999999999999999864
No 258
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-33 Score=273.12 Aligned_cols=164 Identities=32% Similarity=0.498 Sum_probs=138.1
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------------
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------------- 438 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------------- 438 (607)
++ |++++|++. .+ |+||+|++ |+++|+|+|||||
T Consensus 3 ~~-~l~~~~~~~---~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPDF---TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCCe---ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 44 899999743 34 99999999 9999999999999
Q ss_pred -eEEEccCCCccc-ccHHHHhhcCCCCCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 439 -ISIVSQEPVLFN-CSIEENIAYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 439 -i~~V~Q~~~Lf~-gTIreNI~~g~~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
++|++|++.+|. .|++||+.++.. .. .++++.++++..++.+. +......||||||||++||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la 143 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLK-RKRNREDRISVDELLDLLGLDHL-----------LNRYPAQLSGGEKQRVALA 143 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHh-hCCHHHHHHHHHHHHHHcCCHhH-----------hhcCcccCCHHHHHHHHHH
Confidence 579999999995 599999987632 11 22345566666655433 3445678999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 144 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 144 RALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999988753 789999999999885 69999999999998876
No 259
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=4e-33 Score=275.11 Aligned_cols=161 Identities=36% Similarity=0.498 Sum_probs=135.5
Q ss_pred cccceEEeeCCCEEEEEcCCCCcc-------------------------------eEEEccCCCccc-ccHHHHhhcCCC
Q 007337 415 LKGITLKLLSGSKIALVGPSGGGK-------------------------------ISIVSQEPVLFN-CSIEENIAYGCD 462 (607)
Q Consensus 415 L~~isl~i~~Ge~vaiVG~sGsGK-------------------------------i~~V~Q~~~Lf~-gTIreNI~~g~~ 462 (607)
|+|+||+|++||+++|+|+||||| .+|++|++.+|. .|++||+.++..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 579999999999999999999999 379999999987 699999987410
Q ss_pred ---CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHH
Q 007337 463 ---GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAES 535 (607)
Q Consensus 463 ---~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~t 535 (607)
...++ +++.++++..++.+... .....||||||||++||||++++|+++||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~ 149 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAAD-----------KRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALT 149 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHc-----------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHH
Confidence 12222 23566677776655433 2346799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 536 EYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 536 e~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+..+++
T Consensus 150 ~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 150 RGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 9999999988643 789999999999875 59999999999999999876653
No 260
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8.5e-33 Score=277.17 Aligned_cols=189 Identities=29% Similarity=0.494 Sum_probs=147.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++||+++|++ .++|+|+||+|++|++++|+|+|||||
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999964 358999999999999999999999999
Q ss_pred --------eEEEccCCC--c-ccccHHHHhhcCC--CCCCCHHHHHHHHHHcCchHHHHhCCcccc-ccccCCCCCCChh
Q 007337 439 --------ISIVSQEPV--L-FNCSIEENIAYGC--DGKASSADIENAAKMANAHDFISNFPEKYQ-TFVGERGVRLSGG 504 (607)
Q Consensus 439 --------i~~V~Q~~~--L-f~gTIreNI~~g~--~~~~~~~~i~~al~~a~l~~~i~~lp~G~~-T~ige~G~~LSGG 504 (607)
++|++|++. + +..|+.+|+.+.. .......+.. ..+.++++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-----AAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 267788874 2 3458888885420 0001111111 1223444444 232 3456677899999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecC
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 581 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 581 (607)
||||++||||++++|+++||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 789999999999987 599999999999999999
Q ss_pred hhHHhhc-CCchHH
Q 007337 582 HEELLSK-GGVYTA 594 (607)
Q Consensus 582 ~~eL~~~-~g~y~~ 594 (607)
++++... ...|.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 233 TDQVLDDPQHPYTQ 246 (253)
T ss_pred HHHHhcCCCCHHHH
Confidence 9998764 334443
No 261
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=3.6e-33 Score=267.96 Aligned_cols=150 Identities=32% Similarity=0.538 Sum_probs=131.2
Q ss_pred cEEEEeEEEECCCC---CCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------
Q 007337 396 EVELDDVWFAYPSR---PNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~---~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------- 438 (607)
.|+++|++|+|+.. .+.++|+|+||++++||+++|+|+|||||
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 58999999999742 02469999999999999999999999999
Q ss_pred -eEEEccCCCccc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh
Q 007337 439 -ISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM 516 (607)
Q Consensus 439 -i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll 516 (607)
++|++|++.+|. .|++||+.++.. .. .||||||||++||||++
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~--~~---------------------------------~LS~G~~qrv~laral~ 127 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAK--LR---------------------------------GLSGGERKRVSIALELV 127 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHH--hc---------------------------------cCCHHHHHHHHHHHHHH
Confidence 578999998886 499999976411 00 89999999999999999
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCch-hh-hhcCEEEEEeCCEEeEec
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-TV-QSADTVAVVSDGEIVESG 580 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~-~l-~~aD~Iivl~~G~Ive~G 580 (607)
++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+ ..||+|++|++|++++.|
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999875 4789999999996 44 569999999999998764
No 262
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-33 Score=278.98 Aligned_cols=192 Identities=23% Similarity=0.358 Sum_probs=153.0
Q ss_pred cEEEEeEEEECCCC-----------------CCCcccccceEEeeCCCEEEEEcCCCCcc--------------------
Q 007337 396 EVELDDVWFAYPSR-----------------PNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~-----------------~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------- 438 (607)
+|+++||+..|... ...++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 57777776555331 13468999999999999999999999999
Q ss_pred ---eEEEccCCCcc-cccHHHHhhcCCC-CCCCHHHH----HHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 ---ISIVSQEPVLF-NCSIEENIAYGCD-GKASSADI----ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 ---i~~V~Q~~~Lf-~gTIreNI~~g~~-~~~~~~~i----~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
+++++|++.++ ..|++||+.++.. ...+.++. .++++..++.+++ ......||||||||+
T Consensus 84 ~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~Gq~qrv 152 (264)
T PRK13546 84 NGEVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFI-----------YQPVKKYSSGMRAKL 152 (264)
T ss_pred CCEEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCCcccCCHHHHHHH
Confidence 47888998776 4699999986411 02333333 3345555554433 335678999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
+||||++++|+||||||||++||+.+.+.+.+.|.++. .++|+|++||++..+. .||+|++|++|+|++.|+++++.+
T Consensus 153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999998764 4789999999999886 499999999999999999999998
Q ss_pred cCCchHHHHHH
Q 007337 588 KGGVYTALVKR 598 (607)
Q Consensus 588 ~~g~y~~l~~~ 598 (607)
....|.+.+..
T Consensus 233 ~~~~~~~~~~~ 243 (264)
T PRK13546 233 KYEAFLNDFKK 243 (264)
T ss_pred HhHHHHHHHHh
Confidence 76666655544
No 263
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=4.7e-33 Score=305.98 Aligned_cols=177 Identities=32% Similarity=0.476 Sum_probs=151.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++|++++|+|||||||
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999963 369999999999999999999999999
Q ss_pred eEEEccCCCcccc-cHHHHhhcCCCCCC--CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 439 ISIVSQEPVLFNC-SIEENIAYGCDGKA--SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 439 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~--~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
++||+|++.+|.. |++||+.++.. .. .++++.++++..++.+.. ......||||||||++|||||
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLP-KRQASMQKMKQLLAALGCQLDL-----------DSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccc-cchHHHHHHHHHHHHcCCCccc-----------cCChhhCCHHHHHHHHHHHHH
Confidence 7899999998874 99999998742 11 234566677776664322 233457999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++..
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999999998864 4689999999999875 599999999999999999988754
No 264
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.4e-33 Score=292.93 Aligned_cols=194 Identities=34% Similarity=0.492 Sum_probs=157.6
Q ss_pred CcEEEEeEEEECCCC--------CCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------
Q 007337 395 GEVELDDVWFAYPSR--------PNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------- 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~--------~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------- 438 (607)
.-++++|++..|... ....+++||||++++||++||||+|||||
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 347899999999852 13467999999999999999999999999
Q ss_pred ----------eEEEccCCCcc---cccHHHHhhcCC--CCCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCC
Q 007337 439 ----------ISIVSQEPVLF---NCSIEENIAYGC--DGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGV 499 (607)
Q Consensus 439 ----------i~~V~Q~~~Lf---~gTIreNI~~g~--~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~ 499 (607)
+=+|+|||+-. ..||+++|.--- .... .++++.+.++.++|.+. .......
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~ 428 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPH 428 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCch
Confidence 66889998743 689999986321 0011 12346667888877752 1223346
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQS-ADTVAVVSDGEI 576 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~-aD~Iivl~~G~I 576 (607)
.||||||||+||||||..+|+++|+||||||||+-+.+.|.+.|.++.+ +.|.|+|||+++.++. ||+|.||++|+|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 7999999999999999999999999999999999999999999987654 6899999999999976 999999999999
Q ss_pred eEecChhHHhhc-CCchHHHHHH
Q 007337 577 VESGTHEELLSK-GGVYTALVKR 598 (607)
Q Consensus 577 ve~G~~~eL~~~-~g~y~~l~~~ 598 (607)
||.|+.+++.+. ...|.+.+-.
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L~~ 531 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKLLA 531 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHHHH
Confidence 999999999875 6667655443
No 265
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-33 Score=293.39 Aligned_cols=190 Identities=25% Similarity=0.352 Sum_probs=153.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------e------EEEccCCCccc-c
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------I------SIVSQEPVLFN-C 451 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i------~~V~Q~~~Lf~-g 451 (607)
.++++|++|+|+.+...++|+|+||+|++|++++|+|++|||| | .++.+.+.+++ .
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~l 100 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQL 100 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCC
Confidence 5899999999986534579999999999999999999999999 2 23445555543 5
Q ss_pred cHHHHhhcCCC-CCCCHHH----HHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEec
Q 007337 452 SIEENIAYGCD-GKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 526 (607)
Q Consensus 452 TIreNI~~g~~-~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE 526 (607)
|++|||.++.. ...+.++ +.++++.+++.+++.. ....||||||||++|||||+.+|++|||||
T Consensus 101 TV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~-----------~~~~LSGGQrQRVaLArAL~~~P~LLLLDE 169 (549)
T PRK13545 101 TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQ-----------PVKTYSSGMKSRLGFAISVHINPDILVIDE 169 (549)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhC-----------CcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99999987421 0223333 4467777777665443 346799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhcCCchHHHH
Q 007337 527 ATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKGGVYTALV 596 (607)
Q Consensus 527 ~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 596 (607)
||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++...-..|...+
T Consensus 170 PTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~~~~~~~ 241 (549)
T PRK13545 170 ALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYDEFLKKY 241 (549)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHHHHHHHH
Confidence 999999999999999998864 47899999999998865 99999999999999999999987644554444
No 266
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.1e-33 Score=271.61 Aligned_cols=159 Identities=28% Similarity=0.470 Sum_probs=135.6
Q ss_pred EEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------------
Q 007337 399 LDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------------- 438 (607)
Q Consensus 399 ~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------------- 438 (607)
++|+++.|++ .++|+|+||++++||+++|+|+|||||
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999963 369999999999999999999999999
Q ss_pred eEEEccCCCccc-ccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 439 ISIVSQEPVLFN-CSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 439 i~~V~Q~~~Lf~-gTIreNI~~g~~-----~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
++|++|++.+|+ .|++||+.++.. ....++++.++++..++.++.. ....+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK-----------QKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhc-----------CChhhCCHHHHHHHHHH
Confidence 788999999997 799999987421 0112345677788777755433 23467999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEEEEE
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVV 571 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~aD~Iivl 571 (607)
|||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999999988753 78999999999999999999885
No 267
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.2e-32 Score=274.68 Aligned_cols=180 Identities=26% Similarity=0.437 Sum_probs=147.1
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEEE
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISIV 442 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~V 442 (607)
+++|+++. .+|+|+||+|++||+++|+|+||||| ++|+
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEe
Confidence 56777774 17999999999999999999999999 7899
Q ss_pred ccCCC-cccccHHHHhhcCCCCCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 443 SQEPV-LFNCSIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 443 ~Q~~~-Lf~gTIreNI~~g~~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
+|++. ++..|++||+.++.+...+ ++++.++++..++.+.. ......||||||||++||||+++
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhc
Confidence 99975 5578999999987421112 23456667766665433 33456899999999999999997
Q ss_pred -------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 518 -------NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 518 -------~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 679999999999999999999999998875 478999999999965 56999999999999999999998653
Q ss_pred CCchHHHH
Q 007337 589 GGVYTALV 596 (607)
Q Consensus 589 ~g~y~~l~ 596 (607)
....+.+
T Consensus 224 -~~~~~~~ 230 (248)
T PRK03695 224 -ENLAQVF 230 (248)
T ss_pred -hHHHHHh
Confidence 2334444
No 268
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=9.1e-33 Score=266.61 Aligned_cols=150 Identities=33% Similarity=0.545 Sum_probs=123.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
++++|++++|++ .++|+|+||++++||.++|+|+|||||
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999973 369999999999999999999999999
Q ss_pred -eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 -ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 -i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
++|++|++.+|+++..+|+. . .....||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~-----------~~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------R-----------YVNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------h-----------hccccCCHHHHHHHHHHHHHhc
Confidence 33444444443322111111 0 1124799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh--hcCEEEEEeCCEEeEecChhHHh
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ--SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~--~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.| ..|+.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999999998753 789999999999998 69999999999999999 44554
No 269
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-33 Score=309.51 Aligned_cols=192 Identities=28% Similarity=0.454 Sum_probs=155.9
Q ss_pred cEEEEeEEEECCCCC--------CCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------
Q 007337 396 EVELDDVWFAYPSRP--------NHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~--------~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------- 438 (607)
-++++|++++|+... ..++|+|+||+|++||++||+|+|||||
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 2368999999999999999999999999
Q ss_pred ----------eEEEccCCC--cc-cccHHHHhhcCC--CCCCC----HHHHHHHHHHcCch-HHHHhCCccccccccCCC
Q 007337 439 ----------ISIVSQEPV--LF-NCSIEENIAYGC--DGKAS----SADIENAAKMANAH-DFISNFPEKYQTFVGERG 498 (607)
Q Consensus 439 ----------i~~V~Q~~~--Lf-~gTIreNI~~g~--~~~~~----~~~i~~al~~a~l~-~~i~~lp~G~~T~ige~G 498 (607)
|+||+|+|. ++ .-|+.||+.++. ....+ ++++.++++.+++. +..... -
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----------~ 461 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRY-----------P 461 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCC-----------c
Confidence 699999984 66 469999997631 00111 24566777777774 333332 3
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCE
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGE 575 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~ 575 (607)
..||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+
T Consensus 462 ~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 462 HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQ 541 (623)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 57999999999999999999999999999999999999999999988753 689999999999886 499999999999
Q ss_pred EeEecChhHHhhc-CCch-HHHHHH
Q 007337 576 IVESGTHEELLSK-GGVY-TALVKR 598 (607)
Q Consensus 576 Ive~G~~~eL~~~-~g~y-~~l~~~ 598 (607)
|++.|+.+++... ...| +.++..
T Consensus 542 iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 542 IVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred EEEecCHHHHhcCCCCHHHHHHHhh
Confidence 9999999999764 3345 345543
No 270
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6e-33 Score=262.86 Aligned_cols=136 Identities=48% Similarity=0.706 Sum_probs=122.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++++|+||++++||.++|+|+|||||
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999964 369999999999999999999999999
Q ss_pred eEEEccCCCccc-ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 ISIVSQEPVLFN-CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
++|++|+|.+|. .|++||+.+. ||||||||++||||+++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~----------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG----------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec----------------------------------------CCHHHHHHHHHHHHHHC
Confidence 467788877774 4888887652 99999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCE
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGE 575 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~ 575 (607)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.++ .||+|++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999998765 589999999999998 599999999984
No 271
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-33 Score=258.94 Aligned_cols=185 Identities=32% Similarity=0.509 Sum_probs=155.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-++++|++..|.. .++|++|||++++||+++++|++|+||
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999974 479999999999999999999999999
Q ss_pred eEEEccCCCcc-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
|+||||.-.+| +-||+||+.+|.. ...+++.+ ...+++..+-+| -+......++.+|||||+|-+||||||..
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~-~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~ 153 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAY-ARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMS 153 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhh-cccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence 99999999999 6799999999832 11111111 111223334444 35556678899999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchh-hhhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
+|++|+|||||.+|-|.--+.|.+.|+++.+ +.|+++|-++... ++-||+.+||++|+|+.+|+.+||.++.
T Consensus 154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 154 RPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred CCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999998864 5599999999986 5689999999999999999999998763
No 272
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-33 Score=310.18 Aligned_cols=185 Identities=30% Similarity=0.457 Sum_probs=151.1
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
-|+++|++++|+... ..++|+||||+|++||++||||+|||||
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996421 2469999999999999999999999999
Q ss_pred --------------eEEEccCC--Cccc-ccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHhCCcccccccc
Q 007337 439 --------------ISIVSQEP--VLFN-CSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVG 495 (607)
Q Consensus 439 --------------i~~V~Q~~--~Lf~-gTIreNI~~g~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ig 495 (607)
|+||+|+| .++. -|++|||.++.. ...+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 16899998 5665 599999987421 01222 345566666665320 11223
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEe
Q 007337 496 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVS 572 (607)
Q Consensus 496 e~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~ 572 (607)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 44567999999999999999999999999999999999999999999998753 789999999999875 599999999
Q ss_pred CCEEeEecChhHHhhc
Q 007337 573 DGEIVESGTHEELLSK 588 (607)
Q Consensus 573 ~G~Ive~G~~~eL~~~ 588 (607)
+|+|++.|+++++...
T Consensus 244 ~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 244 QGEAVETGSVEQIFHA 259 (623)
T ss_pred CCeecccCCHHHhhcC
Confidence 9999999999998753
No 273
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.5e-32 Score=265.32 Aligned_cols=160 Identities=25% Similarity=0.395 Sum_probs=138.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
++++|++++|++ .++|+|+||+|++||++||+|+||||| ++|
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEE
Confidence 478999999964 368999999999999999999999999 899
Q ss_pred EccCCCcc-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 442 VSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 442 V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
++|++.++ +.|++||+.+..+ ..+++++.++++..++.++... ...+||||||||++||||++++|+
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDR-----------PVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred eccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcC-----------chhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999886 6899999988754 3467788899999988754322 245799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCch-hhhhcCEEEEE
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-TVQSADTVAVV 571 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~-~l~~aD~Iivl 571 (607)
++||||||++||+.+.+.+.+.|++.. +++|+|+|||+.. ....+|+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 4789999999766 55678898876
No 274
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-33 Score=304.91 Aligned_cols=177 Identities=27% Similarity=0.380 Sum_probs=147.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|||||||
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 369999999999999999999999999
Q ss_pred --eEEEccCCCccc-ccHHHHhhcCCCC----CCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 --ISIVSQEPVLFN-CSIEENIAYGCDG----KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 --i~~V~Q~~~Lf~-gTIreNI~~g~~~----~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++||+|++.+|. -|++|||.++... ..+. +++.++++..++.+ .......+|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHHHH
Confidence 689999998886 5999999886320 1122 23444555544422 223345679999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
|++|||||+.+|+|||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+|++.|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999998864 4789999999999886 5999999999999999998876
Q ss_pred h
Q 007337 586 L 586 (607)
Q Consensus 586 ~ 586 (607)
.
T Consensus 231 ~ 231 (506)
T PRK13549 231 T 231 (506)
T ss_pred C
Confidence 4
No 275
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.4e-33 Score=263.20 Aligned_cols=136 Identities=29% Similarity=0.533 Sum_probs=124.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++| +|+|+||++++||+++|+|+|||||
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48999999988 7999999999999999999999999
Q ss_pred eEEEccCC----CcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 439 ISIVSQEP----VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 439 i~~V~Q~~----~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
++|++|++ .+++.|++||+.++. . ||||||||++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~--~------------------------------------LS~G~~qrl~la~a 118 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS--L------------------------------------LSGGNQQKVVLARW 118 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh--h------------------------------------cCHHHHHHHHHHHH
Confidence 78999985 345689999998752 1 99999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 576 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~I 576 (607)
++++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 119 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 119 LARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999874 47899999999998876 999999999974
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-33 Score=305.01 Aligned_cols=178 Identities=25% Similarity=0.361 Sum_probs=148.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|||||||
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 369999999999999999999999999
Q ss_pred eEEEccCCCcccc-cHHHHhhcCCCC-----C---CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 ISIVSQEPVLFNC-SIEENIAYGCDG-----K---AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 i~~V~Q~~~Lf~g-TIreNI~~g~~~-----~---~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
++||+|++.+|.. |++||+.++... . .+ ++++.++++..++.+. ....-.+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHHH
Confidence 7899999988864 999999875310 0 01 1234455555554322 223345799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChh
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~ 583 (607)
|||++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999998864 3689999999999886 59999999999999999988
Q ss_pred HHhh
Q 007337 584 ELLS 587 (607)
Q Consensus 584 eL~~ 587 (607)
++..
T Consensus 231 ~~~~ 234 (510)
T PRK09700 231 DVSN 234 (510)
T ss_pred hCCH
Confidence 7643
No 277
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=246.75 Aligned_cols=157 Identities=32% Similarity=0.508 Sum_probs=136.8
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCcccccHH
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLFNCSIE 454 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf~gTIr 454 (607)
+.++|+|+||++.+||.+||.||||||| ++|+.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 5689999999999999999999999999 9999999999999999
Q ss_pred HHhhcCC---CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 007337 455 ENIAYGC---DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531 (607)
Q Consensus 455 eNI~~g~---~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL 531 (607)
||+-|-- ....+.+...+.++.+++.+. .+..+-.+||||+|||+||+|-|---|+||+|||+||||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l~~~----------~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFALPDS----------ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCCchh----------hhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 9998741 123455556666666666543 455667889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCCeEEEEccCchh-hhhcCEEEEEeCCEEe
Q 007337 532 DAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVSDGEIV 577 (607)
Q Consensus 532 D~~te~~i~~~l~~~~--~~~TvI~ItHrl~~-l~~aD~Iivl~~G~Iv 577 (607)
|+.+.+.|.+.|.++. ++..++.|||.... +++||+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999998876 46799999999987 9999999999999863
No 278
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.7e-32 Score=270.92 Aligned_cols=173 Identities=35% Similarity=0.483 Sum_probs=141.8
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcc--------------------------------------eEEEccCCC-ccc--cc
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGK--------------------------------------ISIVSQEPV-LFN--CS 452 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------------i~~V~Q~~~-Lf~--gT 452 (607)
+|+|+||+|++||+++|+|+||||| ++|++|++. .|. -|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 4789999999999999999999999 789999995 343 58
Q ss_pred HHHHhhcCC-----CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEecc
Q 007337 453 IEENIAYGC-----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 527 (607)
Q Consensus 453 IreNI~~g~-----~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~ 527 (607)
+.||+.+.. .....++++.++++.+++.+ + ++........||||||||++||||++++|+|+|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999986431 10112344677777777652 1 1234455678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc-CCchHH
Q 007337 528 TSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK-GGVYTA 594 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~~ 594 (607)
|++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++... ...|.+
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 999999999999999998753 789999999999985 6999999999999999999999864 344443
No 279
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-32 Score=304.38 Aligned_cols=182 Identities=32% Similarity=0.501 Sum_probs=150.4
Q ss_pred cEEEEeEEEECCCC--------CCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------
Q 007337 396 EVELDDVWFAYPSR--------PNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~--------~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------- 438 (607)
-|+++|++++|+.. .+.++|+|+||+|++||++||+|+|||||
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR 354 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence 48999999999631 12469999999999999999999999999
Q ss_pred ---------eEEEccCC--Cccc-ccHHHHhhcCCC---CCCC----HHHHHHHHHHcCchH-HHHhCCccccccccCCC
Q 007337 439 ---------ISIVSQEP--VLFN-CSIEENIAYGCD---GKAS----SADIENAAKMANAHD-FISNFPEKYQTFVGERG 498 (607)
Q Consensus 439 ---------i~~V~Q~~--~Lf~-gTIreNI~~g~~---~~~~----~~~i~~al~~a~l~~-~i~~lp~G~~T~ige~G 498 (607)
++||+|++ .+|+ .|++||+.++.. ...+ ++++.++++..++.+ .. ....
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~ 423 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETR-----------HRYP 423 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHH-----------hcCC
Confidence 58999998 3665 599999987410 0011 234556666666642 22 2334
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCE
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGE 575 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~ 575 (607)
.+||||||||++||||++.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 67999999999999999999999999999999999999999999998753 789999999999876 599999999999
Q ss_pred EeEecChhHHhhc
Q 007337 576 IVESGTHEELLSK 588 (607)
Q Consensus 576 Ive~G~~~eL~~~ 588 (607)
|++.|+.+++.+.
T Consensus 504 i~~~~~~~~~~~~ 516 (529)
T PRK15134 504 VVEQGDCERVFAA 516 (529)
T ss_pred EEEEcCHHHHhcC
Confidence 9999999999764
No 280
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-33 Score=242.36 Aligned_cols=178 Identities=34% Similarity=0.531 Sum_probs=150.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
+|++++++|.|... .+|.||+|+-+.|+++.+.||||+||
T Consensus 2 sirv~~in~~yg~~---q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEcccccccccc---hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 48999999999753 68999999999999999999999999
Q ss_pred -----eEEEccCCCcc-cccHHHHhhcCCC--CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 -----ISIVSQEPVLF-NCSIEENIAYGCD--GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 -----i~~V~Q~~~Lf-~gTIreNI~~g~~--~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
+|.|+|+-.|. .-|+-||+.-... ...++ .+-.+.++...|.++-+.+| ..|||||.
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggqq 147 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQQ 147 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccchh
Confidence 89999999987 5799999964310 01222 23445667777777776666 56999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
||+||||||.-+|++|++||||+||||+-.++|.+.|+++.. +.|-++|||..+..+ -|.+|+-||+|+|||.|+++-
T Consensus 148 qrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~~ 227 (242)
T COG4161 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred hhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchhh
Confidence 999999999999999999999999999988888888888754 789999999999876 489999999999999999976
Q ss_pred Hhh
Q 007337 585 LLS 587 (607)
Q Consensus 585 L~~ 587 (607)
.-+
T Consensus 228 ft~ 230 (242)
T COG4161 228 FTE 230 (242)
T ss_pred ccC
Confidence 544
No 281
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.2e-32 Score=300.43 Aligned_cols=177 Identities=29% Similarity=0.415 Sum_probs=146.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|||||||
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 369999999999999999999999999
Q ss_pred eEEEccCCCccc-ccHHHHhhcCCCC-----CCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ISIVSQEPVLFN-CSIEENIAYGCDG-----KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 i~~V~Q~~~Lf~-gTIreNI~~g~~~-----~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++||+|++.+|. -|++|||.++... ..+. +++.++++..++.+. ....-.+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 689999998886 5999999886320 1122 234445555544322 223345799999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999999998763 4689999999999875 59999999999999999987764
No 282
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=6.9e-31 Score=315.64 Aligned_cols=181 Identities=24% Similarity=0.410 Sum_probs=154.6
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------e
Q 007337 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i 439 (607)
.++++|++++|+.++ ++++|+|||+++++||++||+||||||| +
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 479999999996321 3579999999999999999999999999 7
Q ss_pred EEEccCCC-cccccHHHHhhcCC----CCCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 440 SIVSQEPV-LFNCSIEENIAYGC----DGKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 440 ~~V~Q~~~-Lf~gTIreNI~~g~----~~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
+||+|++. ++..|+|||+.++. |...++ +++.++++..++.+ -.|+.+|+.|.+||||||||++
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqrqRl~ 911 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQRKRLT 911 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHhhHHH
Confidence 99999865 56789999999752 212333 23567777776644 3689999999999999999999
Q ss_pred HHHHHhcCCC-EEEEeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhh--hhcCEEEEEeCC-EEeEecChh
Q 007337 511 IARALMMNPR-ILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTV--QSADTVAVVSDG-EIVESGTHE 583 (607)
Q Consensus 511 lARAll~~~~-IllLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~ItHrl~~l--~~aD~Iivl~~G-~Ive~G~~~ 583 (607)
|||||+++|+ ||+||||||+||+.+...+.+.|+++ .+++|+|+++|+++.. +.+|+|++|++| ++++.|+..
T Consensus 912 Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 9999999997 99999999999999999999999987 4579999999999963 689999999997 999999864
No 283
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=250.81 Aligned_cols=186 Identities=29% Similarity=0.539 Sum_probs=148.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.+..+|+..+|..+ ++.+++||+|++||.|++.||+|+||
T Consensus 4 ~L~a~~l~K~y~kr---~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhCCe---eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 47889999999754 79999999999999999999999999
Q ss_pred eEEEccCCCcc-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
|+|+||+|.+| .-|++|||..--+ ..+..-+..-+...+++.++.+ .+...-...|..||||||.|+.|||||..
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE--~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLE--IREKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHh--hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 99999999999 5699999986532 2221112222222222333322 22333345689999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCc-hhhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRL-STVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl-~~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+|+.++||||++++||.+-..|++.++.+.. +--+++.-|.. +|+.-|||.+++.+|+|..+|+++|+.++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 9999999999999999999999999988754 44555556777 58999999999999999999999999875
No 284
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.3e-32 Score=298.54 Aligned_cols=175 Identities=26% Similarity=0.365 Sum_probs=149.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++|++++|++ .++|+|+||+|++|++++|+||||||| ++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999974 359999999999999999999999999 67
Q ss_pred EEccCCCc---------ccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 441 IVSQEPVL---------FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 441 ~V~Q~~~L---------f~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
|++|++.+ +.-|++||+.++. ..++++.++++..++.+... .....||||||||++|
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLD-----------RRFKYLSTGETRKTLL 146 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhh-----------CCcccCCHHHHHHHHH
Confidence 99998653 2468999987652 23456778888887765433 2346799999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||||+++|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|+..|+.+++.+.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ 225 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcc
Confidence 9999999999999999999999999999999988743 689999999999875 4999999999999999999887653
No 285
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.1e-32 Score=268.68 Aligned_cols=170 Identities=26% Similarity=0.352 Sum_probs=133.3
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------e-------EEEccCCCc-ccc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------I-------SIVSQEPVL-FNC 451 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i-------~~V~Q~~~L-f~g 451 (607)
+.++|++.+|++ +++|+|+||+|++||+++|+|+||||| | ....+...+ .+.
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 99 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPEL 99 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCC
Confidence 667788888863 469999999999999999999999999 1 111222333 467
Q ss_pred cHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEec
Q 007337 452 SIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 526 (607)
Q Consensus 452 TIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE 526 (607)
|++||+.++.. ...+. +++.++++..++.+. .++. ...||||||||++||||++++|+++||||
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LSgG~~qrv~laral~~~p~llllDE 168 (224)
T cd03220 100 TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDF-------IDLP----VKTYSSGMKARLAFAIATALEPDILLIDE 168 (224)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-------hhCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999987531 01122 234555555555433 2333 35799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 527 ATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 527 ~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 169 P~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 169 VLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999988643 589999999999876 59999999999998765
No 286
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=3.4e-32 Score=269.60 Aligned_cols=158 Identities=28% Similarity=0.471 Sum_probs=129.1
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEEEc-cCCCcc-cccHH
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISIVS-QEPVLF-NCSIE 454 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~V~-Q~~~Lf-~gTIr 454 (607)
.++|+|+||+|++||+++|+|+||||| ++|++ |++.+| .-|++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~ 113 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVI 113 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHH
Confidence 469999999999999999999999999 68997 666675 67999
Q ss_pred HHhhcCCC-CCCCHH----HHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCC
Q 007337 455 ENIAYGCD-GKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 529 (607)
Q Consensus 455 eNI~~g~~-~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TS 529 (607)
||+.+... ...+.+ ++.++++..++.+. .++. ...||||||||++||||++++|+++||||||+
T Consensus 114 e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~~~----~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 182 (236)
T cd03267 114 DSFYLLAAIYDLPPARFKKRLDELSELLDLEEL-------LDTP----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTI 182 (236)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-------hcCC----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 99976421 012222 23445555555433 2333 35699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 530 ALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 530 aLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999998743 689999999999875 59999999999998765
No 287
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-33 Score=246.48 Aligned_cols=179 Identities=34% Similarity=0.541 Sum_probs=151.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|+..+|.+. .+|++|||+.++|+.|.|+|.|||||
T Consensus 6 ~l~v~dlHK~~G~~---eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhcccc---hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 58999999999754 59999999999999999999999999
Q ss_pred ------------eEEEccCCCcc-cccHHHHhhcC------CCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCC
Q 007337 439 ------------ISIVSQEPVLF-NCSIEENIAYG------CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 499 (607)
Q Consensus 439 ------------i~~V~Q~~~Lf-~gTIreNI~~g------~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~ 499 (607)
.+.|+|..-|. .-|+.||+.-+ .+..---|+-+..+.++|+.+--..-| .
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----------~ 151 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-----------A 151 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------c
Confidence 88999998887 57999998643 211001123344566777776654444 6
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEe
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV 577 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Iv 577 (607)
.|||||.||.||||||.-+|+++++|||||||||+---.+.+.++++. .++|.++|||.+.+.++ +.+|+.|++|+|-
T Consensus 152 ~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iE 231 (256)
T COG4598 152 HLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIE 231 (256)
T ss_pred ccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceec
Confidence 799999999999999999999999999999999998888888887765 58999999999999987 7899999999999
Q ss_pred EecChhHHhhc
Q 007337 578 ESGTHEELLSK 588 (607)
Q Consensus 578 e~G~~~eL~~~ 588 (607)
|+|+++++..+
T Consensus 232 E~G~P~qvf~n 242 (256)
T COG4598 232 EEGPPEQVFGN 242 (256)
T ss_pred ccCChHHHhcC
Confidence 99999999865
No 288
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.6e-32 Score=262.61 Aligned_cols=160 Identities=26% Similarity=0.360 Sum_probs=134.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||| ++|
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEE
Confidence 689999999964 369999999999999999999999999 899
Q ss_pred EccCCCcc-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 442 VSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 442 V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
++|++.++ ..|++||+.++.....++.++.++++..++.+.. +.. ...||||||||++||||++++|+
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~----~~~LS~G~~~rv~laral~~~p~ 147 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLI-------DYP----CGLLSSGQKRQVALLRLWMSKAK 147 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhh-------hCC----hhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999986 6899999998631112344566677766654432 222 24699999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEE
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 570 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iiv 570 (607)
++||||||++||+.+...+.+.|+++. +++|+|++||+.+.+..||.-++
T Consensus 148 ~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 148 LWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999863 57899999999999999997654
No 289
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.98 E-value=1.4e-32 Score=266.33 Aligned_cols=182 Identities=34% Similarity=0.550 Sum_probs=156.8
Q ss_pred cEEEEeEEEECCCCCC---------------------CcccccceEEeeCCCEEEEEcCCCCcc----------------
Q 007337 396 EVELDDVWFAYPSRPN---------------------HMVLKGITLKLLSGSKIALVGPSGGGK---------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~---------------------~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------- 438 (607)
.|+++||+.-+.+++. .--++|+||+|+.||+..|-|=|||||
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5888998877754321 123789999999999999999999999
Q ss_pred ------------------------eEEEccCCCcc-cccHHHHhhcCCC-----CCCCHHHHHHHHHHcCchHHHHhCCc
Q 007337 439 ------------------------ISIVSQEPVLF-NCSIEENIAYGCD-----GKASSADIENAAKMANAHDFISNFPE 488 (607)
Q Consensus 439 ------------------------i~~V~Q~~~Lf-~gTIreNI~~g~~-----~~~~~~~i~~al~~a~l~~~i~~lp~ 488 (607)
++.|+|..-|| .-||.||..||-+ ..-.+++..++++.+||++|=.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 99999998887 6899999999842 1112445778999999999877776
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCch-hhhhc
Q 007337 489 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLS-TVQSA 565 (607)
Q Consensus 489 G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~-~l~~a 565 (607)
..||||++||+.|||||..||+||++|||+|||||--....++.|.++- -.||+|+|||+|+ .++-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4689999999999999999999999999999999999999999887653 3799999999997 57889
Q ss_pred CEEEEEeCCEEeEecChhHHhhc
Q 007337 566 DTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 566 D~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||..|++|+|++.||++|++.+
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcC
Confidence 99999999999999999999875
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.98 E-value=3.9e-32 Score=298.47 Aligned_cols=172 Identities=27% Similarity=0.359 Sum_probs=143.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|+|||||
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 369999999999999999999999999
Q ss_pred eEEEccCCCcccc-cHHHHhhcCCCC---C-CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 ISIVSQEPVLFNC-SIEENIAYGCDG---K-AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 i~~V~Q~~~Lf~g-TIreNI~~g~~~---~-~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
++||+|++.+|.. |++||+.++... . .+ ++++.++++..++.+ ........||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHHH
Confidence 7899999998875 999999986310 1 12 223455555555432 12234567999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecC
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 581 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 581 (607)
+||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.++
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~ 223 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFD 223 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999998864 4689999999999875 599999999999987665
No 291
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.98 E-value=1.2e-31 Score=267.07 Aligned_cols=190 Identities=36% Similarity=0.551 Sum_probs=155.1
Q ss_pred CcEEEEeEEEECCCCC--------CCcccccceEEeeCCCEEEEEcCCCCcc----------------------------
Q 007337 395 GEVELDDVWFAYPSRP--------NHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------- 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~--------~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------- 438 (607)
.-++.+|+...|+-+. ...+.++|||+.++||+++|||+|||||
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~ 354 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLS 354 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccC
Confidence 3588999988887432 1346899999999999999999999999
Q ss_pred ----------eEEEccCCCc---ccccHHHHhhcC----CCCCCC----HHHHHHHHHHcCchHHHH-hCCccccccccC
Q 007337 439 ----------ISIVSQEPVL---FNCSIEENIAYG----CDGKAS----SADIENAAKMANAHDFIS-NFPEKYQTFVGE 496 (607)
Q Consensus 439 ----------i~~V~Q~~~L---f~gTIreNI~~g----~~~~~~----~~~i~~al~~a~l~~~i~-~lp~G~~T~ige 496 (607)
+-+|+|||+= -.-||.+=|.=| .| ..+ ++++.+|++.+|++.... ..|
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RYP--------- 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRYP--------- 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcCC---------
Confidence 7899999982 235666655443 22 233 456888999999986543 333
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC
Q 007337 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSD 573 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~ 573 (607)
..+|||||||||||||+.-+|.+++|||||||||-.-.++|.+.|+++- .+-+=++|+|+|..++. ||+|+||.+
T Consensus 425 --hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 425 --HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred --cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 5689999999999999999999999999999999999999999998763 46799999999999975 999999999
Q ss_pred CEEeEecChhHHhhc-CCchH-HHH
Q 007337 574 GEIVESGTHEELLSK-GGVYT-ALV 596 (607)
Q Consensus 574 G~Ive~G~~~eL~~~-~g~y~-~l~ 596 (607)
|+|||+|+-+++.++ ...|. .|+
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~~L~ 527 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTRALL 527 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHHHHH
Confidence 999999999999975 45553 444
No 292
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=5.2e-32 Score=262.32 Aligned_cols=161 Identities=20% Similarity=0.308 Sum_probs=137.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
|+++|++++|+. .++|+|+||+|++||+++|+|+||||| ++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEE
Confidence 689999999964 369999999999999999999999999 789
Q ss_pred EccCCCccc-ccHHHHhhcCCCC--CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC
Q 007337 442 VSQEPVLFN-CSIEENIAYGCDG--KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 518 (607)
Q Consensus 442 V~Q~~~Lf~-gTIreNI~~g~~~--~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~ 518 (607)
++|++.+++ .|++|||.++.+. ..+++++.++++..++.++... ....||||||||++||||++++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDV-----------PVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhC-----------ChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 6999999876321 1345678889999988765432 2457999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEE
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVV 571 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl 571 (607)
|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. .+|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999998764 47899999999999954 5566665
No 293
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.98 E-value=6.5e-32 Score=298.65 Aligned_cols=185 Identities=31% Similarity=0.458 Sum_probs=150.2
Q ss_pred cEEEEeEEEECCCC-CCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~-~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
-|+++|++++|+.. ...++|+|+||+|++||++||+|||||||
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 12469999999999999999999999999
Q ss_pred ---------eEEEccCCC--cc-cccHHHHhhcC------CCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCC
Q 007337 439 ---------ISIVSQEPV--LF-NCSIEENIAYG------CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500 (607)
Q Consensus 439 ---------i~~V~Q~~~--Lf-~gTIreNI~~g------~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~ 500 (607)
++||+|+|. ++ .-|+++|+.+. .+.....+++.++++.+++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 478999985 44 35899998642 110111345667777777753211 11234567
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEe
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 577 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Iv 577 (607)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|+
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 3789999999999876 59999999999999
Q ss_pred EecChhHHhhc
Q 007337 578 ESGTHEELLSK 588 (607)
Q Consensus 578 e~G~~~eL~~~ 588 (607)
+.|+.+++...
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998754
No 294
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.98 E-value=9.9e-33 Score=251.32 Aligned_cols=179 Identities=32% Similarity=0.485 Sum_probs=151.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
+++.+++.+|++ ....++||||+++.||.++|.|++|+|| ||+
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcce
Confidence 678999999975 3458999999999999999999999999 788
Q ss_pred EccCCCcc-cccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLF-NCSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf-~gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
++-+.-|+ .-|.||||.|+.. .+.+ +.++.+..+.-++.+.+ |+++ .+||-|+|||++|||||
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~-------~rRv----~~~S~G~kqkV~iARAl 148 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYL-------DRRV----GEFSTGMKQKVAIARAL 148 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHH-------HHHH----hhhchhhHHHHHHHHHH
Confidence 87666665 6799999988631 0122 34555566666665543 3344 46999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
.+||+|+|||||||+||-.+.+.+.+-+.++.. ++++|+-||-++.++ -||+|+++++|++|..|+.+++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999998765 899999999999998 7999999999999999999999765
No 295
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.98 E-value=7.5e-32 Score=263.13 Aligned_cols=164 Identities=23% Similarity=0.326 Sum_probs=137.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIV 442 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V 442 (607)
-++++|++++|++ .++++|+||+|++||+++|+|+||||| ++|+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~ 87 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYL 87 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEe
Confidence 5899999999964 359999999999999999999999999 6899
Q ss_pred ccCCCcccc-cHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 443 SQEPVLFNC-SIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 443 ~Q~~~Lf~g-TIreNI~~g~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
+|++.+|++ |++||+.++.. ....++...++++..++.+. .++ ....||||||||++||||++++|
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LS~G~~qrv~laral~~~p 156 (214)
T PRK13543 88 GHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGY-------EDT----LVRQLSAGQKKRLALARLWLSPA 156 (214)
T ss_pred ecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhh-------ccC----ChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999986 99999976421 01123445566666655432 233 33679999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeC
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSD 573 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~ 573 (607)
+++||||||++||+++.+.+.+.|++.. +++|+|++||+++.+. .||+|++++.
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 157 PLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999998753 4689999999999874 6899999875
No 296
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.98 E-value=2.9e-32 Score=298.92 Aligned_cols=174 Identities=25% Similarity=0.348 Sum_probs=143.6
Q ss_pred EEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------eEE
Q 007337 399 LDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------ISI 441 (607)
Q Consensus 399 ~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------i~~ 441 (607)
++|++++|++ .++|+|+||++++||+++|+|+||||| ++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 369999999999999999999999999 789
Q ss_pred EccCCCccc-ccHHHHhhcCCCC--C--CCHH----HHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 442 VSQEPVLFN-CSIEENIAYGCDG--K--ASSA----DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 442 V~Q~~~Lf~-gTIreNI~~g~~~--~--~~~~----~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
|+|++.+|. .|++||+.++... . .+.+ ++.++++..+ ++........+||||||||++||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELD-----------IDIDPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcC-----------CCCCccCchhhCCHHHHHHHHHH
Confidence 999998765 6999999876310 1 1222 2333333333 33333445678999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
|||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+.+++.
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 99999999999999999999999999999998864 4789999999999875 59999999999999999987763
No 297
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.98 E-value=3.2e-32 Score=258.34 Aligned_cols=162 Identities=32% Similarity=0.537 Sum_probs=125.7
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------eEEEccCCCcccccHHHHhhcCCC-CCCCHHH
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------ISIVSQEPVLFNCSIEENIAYGCD-GKASSAD 469 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~~~~~ 469 (607)
+++|++++|+. .++|+|+||++++||+++|+|+||||| .+..+. .+|+|+=| |.+ ...+..+
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~----~~G~v~~~---g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP----SSGEILLD---GKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC----CCcEEEEC---CEECCcCCHHH
Confidence 47899999964 369999999999999999999999999 333221 23433210 000 0011111
Q ss_pred H-------HHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHH
Q 007337 470 I-------ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA 542 (607)
Q Consensus 470 i-------~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~ 542 (607)
+ .++++.+++.+++. .....||||||||++||||++++|+++||||||++||+++...+.+.
T Consensus 71 ~~~~i~~~~q~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 139 (180)
T cd03214 71 LARKIAYVPQALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139 (180)
T ss_pred HHHHHhHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 1 12566666665543 34578999999999999999999999999999999999999999999
Q ss_pred HHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEec
Q 007337 543 MDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESG 580 (607)
Q Consensus 543 l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G 580 (607)
|+++.+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 140 l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 988755 68999999999997 569999999999998754
No 298
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.6e-31 Score=295.67 Aligned_cols=180 Identities=24% Similarity=0.353 Sum_probs=152.0
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCC--
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPV-- 447 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~-- 447 (607)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||| ++|++|++.
T Consensus 318 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~ 394 (530)
T PRK15064 318 NALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYD 394 (530)
T ss_pred ceEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEccccccc
Confidence 35999999999964 359999999999999999999999999 899999974
Q ss_pred cc-cccHHHHhhcCCCCCCCHHHHHHHHHHcCch-HHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 007337 448 LF-NCSIEENIAYGCDGKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525 (607)
Q Consensus 448 Lf-~gTIreNI~~g~~~~~~~~~i~~al~~a~l~-~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLD 525 (607)
++ ..|++||+.+......+++++.++++..++. +.. ......||||||||++||||++++|+|||||
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LSgGq~qrv~la~al~~~p~lllLD 463 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-----------KKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD 463 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-----------cCcccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44 3699999975421123456677888887773 222 2345689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEe-EecChhHHhhcCC
Q 007337 526 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESGTHEELLSKGG 590 (607)
Q Consensus 526 E~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Iv-e~G~~~eL~~~~g 590 (607)
|||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++..|
T Consensus 464 EPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~ 528 (530)
T PRK15064 464 EPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQG 528 (530)
T ss_pred CCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHhC
Confidence 999999999999999999886 4699999999998864 9999999999998 7899988876543
No 299
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=8.7e-32 Score=297.17 Aligned_cols=177 Identities=28% Similarity=0.448 Sum_probs=146.7
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------e---------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------I--------------------------- 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------i--------------------------- 439 (607)
|+++|++++|++ .++|+|+||++++||+++|+|+||||| +
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 369999999999999999999999999 1
Q ss_pred ----------------------------------EEEccC-CCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcC
Q 007337 440 ----------------------------------SIVSQE-PVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMAN 478 (607)
Q Consensus 440 ----------------------------------~~V~Q~-~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~ 478 (607)
+||+|+ +.+|+ -|++||+.++.. ...+ ++++.++++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 366786 56665 599999987421 0122 234666777777
Q ss_pred chHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEc
Q 007337 479 AHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIA 556 (607)
Q Consensus 479 l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~It 556 (607)
+.+... ..-.+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+||
T Consensus 158 l~~~~~-----------~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRIT-----------HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhh-----------cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 654432 33467999999999999999999999999999999999999999999988743 78999999
Q ss_pred cCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 557 HRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 557 Hrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
|+++.+. .||+|++|++|+|++.|+++++..
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9999986 599999999999999999988765
No 300
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=1.1e-31 Score=297.82 Aligned_cols=185 Identities=26% Similarity=0.424 Sum_probs=144.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCccc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFN 450 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~ 450 (607)
-|+++|++++|+. +.++|+|+||+|++|++++|+||||||| ++||+|+|.+++
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCC
Confidence 5899999999962 2469999999999999999999999999 799999999986
Q ss_pred c-cHHHHhhcCCC----------------CCCC---------HHHHHHHHHHcC-------chHHHHhCCccccccccCC
Q 007337 451 C-SIEENIAYGCD----------------GKAS---------SADIENAAKMAN-------AHDFISNFPEKYQTFVGER 497 (607)
Q Consensus 451 g-TIreNI~~g~~----------------~~~~---------~~~i~~al~~a~-------l~~~i~~lp~G~~T~ige~ 497 (607)
. |++||+.++.. .... ..++.+.++.++ +.+.++.+ |++ .....
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~-~~~~~ 160 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL--RCP-PWDAK 160 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC--CCC-cccCc
Confidence 5 99999987521 0000 011122222211 11122222 221 12334
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 007337 498 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 576 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~I 576 (607)
..+||||||||++||||++.+|++||||||||+||+++...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|++
T Consensus 161 ~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 5679999999999999999999999999999999999999999999886 3699999999998865 999999999998
Q ss_pred e-EecChhHHhh
Q 007337 577 V-ESGTHEELLS 587 (607)
Q Consensus 577 v-e~G~~~eL~~ 587 (607)
+ ..|++++..+
T Consensus 239 ~~~~g~~~~~~~ 250 (556)
T PRK11819 239 IPWEGNYSSWLE 250 (556)
T ss_pred EEecCCHHHHHH
Confidence 6 7899987654
No 301
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.98 E-value=1e-31 Score=296.67 Aligned_cols=186 Identities=26% Similarity=0.400 Sum_probs=149.3
Q ss_pred cEEEEeEEEECCC--CCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------e---------------
Q 007337 396 EVELDDVWFAYPS--RPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------I--------------- 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~--~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------i--------------- 439 (607)
-|+++|++++|+. ....++|+|+||+|++||+++|+||||||| +
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 112469999999999999999999999999 3
Q ss_pred ---------EEEccCCCccc-ccHHHHhhcCCCCCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 440 ---------SIVSQEPVLFN-CSIEENIAYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 440 ---------~~V~Q~~~Lf~-gTIreNI~~g~~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
+||+|++.+|+ -|++||+.++..... .++++.++++..++.+.- .+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHHH
Confidence 48899988886 599999976310011 123455666666664200 0001223446799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecCh
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTH 582 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~ 582 (607)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988743 789999999999886 5999999999999999999
Q ss_pred hHHhh
Q 007337 583 EELLS 587 (607)
Q Consensus 583 ~eL~~ 587 (607)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88754
No 302
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.98 E-value=1.6e-31 Score=300.73 Aligned_cols=180 Identities=33% Similarity=0.469 Sum_probs=152.6
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
.++++|++++|+... ..++|+|+||++++||+++|+|+|||||
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999997421 2469999999999999999999999999
Q ss_pred ----eEEEccCCCccc-ccHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ----ISIVSQEPVLFN-CSIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ----i~~V~Q~~~Lf~-gTIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++|++|++.+|+ .|+.||+.+.... ..+ +++..++++.+++.+.+ .....+|||||+||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-----------~~~~~~LS~Gq~qr 152 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRV-----------EYQPSQLSGGQQQR 152 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhh-----------cCCcccCCHHHHHH
Confidence 689999999996 5999999874210 111 22345556666555443 33445899999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHh
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
++|||||+++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.++.||++++|++|+++++|+.+|..
T Consensus 153 v~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 153 VSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 999999999999999999999999999999999998875 479999999999999999999999999999999999876
No 303
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.98 E-value=7.2e-32 Score=296.60 Aligned_cols=176 Identities=29% Similarity=0.426 Sum_probs=144.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
|+++|++++|++ .++|+|+||++++||+++|+|+|||||
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 369999999999999999999999999
Q ss_pred -eEEEccCCCccc-ccHHHHhhcCCCC-----CCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 -ISIVSQEPVLFN-CSIEENIAYGCDG-----KASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 -i~~V~Q~~~Lf~-gTIreNI~~g~~~-----~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
++||+|++.+|. -|++||+.++... ..+. +++.++++..++.+.. .+. ....|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~----~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTR----PVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccC----chhhCCHHHHH
Confidence 689999998876 4999999886320 0111 2344445554442211 112 24579999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
|++|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999998764 4689999999999886 4999999999999999987654
No 304
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.6e-31 Score=259.47 Aligned_cols=162 Identities=26% Similarity=0.384 Sum_probs=138.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEEc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIVS 443 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V~ 443 (607)
|+++|++++|++ ..+|+|+||+|++||+++|+|+||||| ++|++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLG 79 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEec
Confidence 789999999964 368999999999999999999999999 58999
Q ss_pred cCCCcc-cccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCE
Q 007337 444 QEPVLF-NCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 521 (607)
Q Consensus 444 Q~~~Lf-~gTIreNI~~g~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~I 521 (607)
|++.++ +.|++||+.+... ....++++.++++..++.++. ..| ...||||||||++||||++++|++
T Consensus 80 ~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~----------~~~LS~G~~qrl~la~al~~~p~l 148 (207)
T PRK13539 80 HRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLA-HLP----------FGYLSAGQKRRVALARLLVSNRPI 148 (207)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHH-cCC----------hhhcCHHHHHHHHHHHHHhcCCCE
Confidence 887765 6899999987421 123456688899999887643 222 247999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 522 LLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 522 llLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
+||||||++||+.+.+.+.+.|+++. +++|+|++||++..++. |+++.++.
T Consensus 149 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 149 WILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999998753 57899999999999998 99988855
No 305
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=1.3e-31 Score=297.24 Aligned_cols=185 Identities=28% Similarity=0.439 Sum_probs=150.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCccc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFN 450 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~ 450 (607)
-|+++|++++|++ ++++|+|+||+|++|++++|+|+||||| |+||+|+|++|+
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 4899999999962 2369999999999999999999999999 899999999985
Q ss_pred -ccHHHHhhcCCCC-----------------CCC--------HHHHHHHHHHcCchH-------HHHhCCccccccccCC
Q 007337 451 -CSIEENIAYGCDG-----------------KAS--------SADIENAAKMANAHD-------FISNFPEKYQTFVGER 497 (607)
Q Consensus 451 -gTIreNI~~g~~~-----------------~~~--------~~~i~~al~~a~l~~-------~i~~lp~G~~T~ige~ 497 (607)
-|++|||.++... ... ..++.++++.+++++ .++.+ |++ .....
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~-~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL--RCP-PWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC--CCC-cccCc
Confidence 5999999875210 001 124566666666543 22222 232 12445
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 007337 498 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEI 576 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~I 576 (607)
..+||||||||++||||++.+|++|||||||++||+++...+.+.|.+. ++|+|+|||+++.+.. ||+|++|++|++
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 6789999999999999999999999999999999999999999999876 4699999999999875 899999999997
Q ss_pred e-EecChhHHhh
Q 007337 577 V-ESGTHEELLS 587 (607)
Q Consensus 577 v-e~G~~~eL~~ 587 (607)
+ ..|++++..+
T Consensus 237 ~~~~g~~~~~~~ 248 (552)
T TIGR03719 237 IPWEGNYSSWLE 248 (552)
T ss_pred EEecCCHHHHHH
Confidence 6 6799987654
No 306
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.97 E-value=1.5e-31 Score=249.21 Aligned_cols=153 Identities=33% Similarity=0.416 Sum_probs=117.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------eEEEccCCCcccccHHHHhhcCCCCCCCHHH
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------ISIVSQEPVLFNCSIEENIAYGCDGKASSAD 469 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~ 469 (607)
|+++|++++|++ .++|+|+||+|++||.++|+|+||||| .+..+. .+|+|+ +... +.++..
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~----~~G~v~----~~g~-~~~~~~ 68 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP----DSGEIL----VDGK-EVSFAS 68 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC----CCeEEE----ECCE-ECCcCC
Confidence 578999999974 369999999999999999999999999 343332 345442 2211 111100
Q ss_pred HHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-C
Q 007337 470 IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-K 548 (607)
Q Consensus 470 i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~ 548 (607)
..+..+. .+ ||-.+ ||||||||++||||++++|+++||||||++||+++.+.+.+.|+++. +
T Consensus 69 ~~~~~~~-----~i-----~~~~q-------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~ 131 (163)
T cd03216 69 PRDARRA-----GI-----AMVYQ-------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ 131 (163)
T ss_pred HHHHHhc-----Ce-----EEEEe-------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC
Confidence 0011110 01 12111 99999999999999999999999999999999999999999998874 4
Q ss_pred CCeEEEEccCchhhh-hcCEEEEEeCCEEeE
Q 007337 549 GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 578 (607)
Q Consensus 549 ~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive 578 (607)
++|+|++||+++.+. .||++++|++|++++
T Consensus 132 ~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 132 GVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 789999999999775 599999999999975
No 307
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.97 E-value=1.2e-31 Score=263.31 Aligned_cols=164 Identities=30% Similarity=0.491 Sum_probs=136.3
Q ss_pred EEeeCCCEEEEEcCCCCcc-------------------------------eEEEccCCCc---ccccHHHHhhcCCC---
Q 007337 420 LKLLSGSKIALVGPSGGGK-------------------------------ISIVSQEPVL---FNCSIEENIAYGCD--- 462 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGK-------------------------------i~~V~Q~~~L---f~gTIreNI~~g~~--- 462 (607)
|+|++||+++|+|+||||| ++|++|++.+ |+.|++||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5789999999999999999 7999999876 56899999987521
Q ss_pred ------CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHH
Q 007337 463 ------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE 536 (607)
Q Consensus 463 ------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te 536 (607)
...+++++.++++..++.++... ....||||||||++||||++++|+++||||||++||+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~ 149 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADR-----------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ 149 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcC-----------ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 01123457788888887654422 3346999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhcCCchHHHH
Q 007337 537 YLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKGGVYTALV 596 (607)
Q Consensus 537 ~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 596 (607)
..+.+.|+++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+.+ .+..++
T Consensus 150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~~-~~~~~~ 209 (223)
T TIGR03771 150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDPA-PWMTTF 209 (223)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcChH-HHHHHh
Confidence 99999999875 4789999999999875 59999999 79999999999987643 344444
No 308
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.4e-31 Score=294.25 Aligned_cols=176 Identities=23% Similarity=0.376 Sum_probs=143.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCccc-
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFN- 450 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~- 450 (607)
|+++|++++|++ .++|+|+||+|++||+++|+||||||| ++|++|++.+|.
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~ 78 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEE 78 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCC
Confidence 789999999963 369999999999999999999999999 799999998875
Q ss_pred ccHHHHhhcCCCC---------------CC----------------------CHHHHHHHHHHcCchHHHHhCCcccccc
Q 007337 451 CSIEENIAYGCDG---------------KA----------------------SSADIENAAKMANAHDFISNFPEKYQTF 493 (607)
Q Consensus 451 gTIreNI~~g~~~---------------~~----------------------~~~~i~~al~~a~l~~~i~~lp~G~~T~ 493 (607)
-|++||+.++... .. .++++.++++..++.+..
T Consensus 79 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---------- 148 (530)
T PRK15064 79 FTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ---------- 148 (530)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH----------
Confidence 5999999875210 00 012233333333332211
Q ss_pred ccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEe
Q 007337 494 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS 572 (607)
Q Consensus 494 ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~ 572 (607)
......+||||||||++|||||+.+|++|||||||++||+++...+.+.|.+ .++|+|+|||+++.+. .||+|++|+
T Consensus 149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~ 226 (530)
T PRK15064 149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLD 226 (530)
T ss_pred hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEe
Confidence 1123568999999999999999999999999999999999999999999975 4799999999999875 599999999
Q ss_pred CCEE-eEecChhHHhh
Q 007337 573 DGEI-VESGTHEELLS 587 (607)
Q Consensus 573 ~G~I-ve~G~~~eL~~ 587 (607)
+|++ +..|++++.++
T Consensus 227 ~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 227 YGELRVYPGNYDEYMT 242 (530)
T ss_pred CCEEEEecCCHHHHHH
Confidence 9999 47899988764
No 309
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.1e-31 Score=238.00 Aligned_cols=173 Identities=30% Similarity=0.457 Sum_probs=143.3
Q ss_pred cEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
-|++++++..-++.. +..+|++|+|.|++||.+||||||||||
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 478888877665432 3468999999999999999999999999
Q ss_pred ----eEEEccCCCcc-cccHHHHhhcCCC----CCC-CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ----ISIVSQEPVLF-NCSIEENIAYGCD----GKA-SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ----i~~V~Q~~~Lf-~gTIreNI~~g~~----~~~-~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
+++|+|..+|. +-|-.||+.+--. ... ..+.-.+.+++++|.+-+...| .+||||+.||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 99999999876 7899999976321 011 1222455677777766655555 6799999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEeEe
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~ 579 (607)
+|||||+...|+||+-||||-+||.+|-.+|.+.+-.+- .+.|.|+|||++....+|||++.|.+|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999886543 47899999999999999999999999999863
No 310
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=2.3e-31 Score=261.82 Aligned_cols=165 Identities=31% Similarity=0.362 Sum_probs=133.8
Q ss_pred EEEEeEEEECCCC---C-CCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------
Q 007337 397 VELDDVWFAYPSR---P-NHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~---~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------- 438 (607)
|+++|++++|+.. . ..++|+|+||+|++||.++|+|+|||||
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 7899999999631 1 2469999999999999999999999999
Q ss_pred ----------eEEEccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCC
Q 007337 439 ----------ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 439 ----------i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
++|++|++.+|+ -|++|||.+... ...+ ++++.++++..++.+... .....+||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LS 151 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW----------HLPPATFS 151 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh----------hCCcccCC
Confidence 358999998876 599999976310 0122 234556666666544321 12366899
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEE
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVV 571 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl 571 (607)
||||||++||||++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|+.+
T Consensus 152 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 152 GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999999998874 3789999999999885 69999876
No 311
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=257.97 Aligned_cols=187 Identities=32% Similarity=0.506 Sum_probs=145.7
Q ss_pred cEEEEeEEEECCCCCC------CcccccceEEeeCCCEEEEEcCCCCcc-------eEEEc-cC-CCcccccHHHHhhcC
Q 007337 396 EVELDDVWFAYPSRPN------HMVLKGITLKLLSGSKIALVGPSGGGK-------ISIVS-QE-PVLFNCSIEENIAYG 460 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~------~~vL~~isl~i~~Ge~vaiVG~sGsGK-------i~~V~-Q~-~~Lf~gTIreNI~~g 460 (607)
-++++|++..|+.... ..+++||||+|++||+++|||+||||| ++... .+ ..+|+|.= |+.-
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~---i~~~ 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD---ITKL 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc---hhhc
Confidence 3789999999875421 368999999999999999999999999 22222 11 11233210 2111
Q ss_pred CCCCCCHHHHHHHHHHcCchH-HHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHH
Q 007337 461 CDGKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV 539 (607)
Q Consensus 461 ~~~~~~~~~i~~al~~a~l~~-~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i 539 (607)
+. +-..+++.+.++.+++.+ +....| ..||||||||++|||||.-+|++++.||||||||.-.+++|
T Consensus 81 ~~-~~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqI 148 (268)
T COG4608 81 SK-EERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI 148 (268)
T ss_pred ch-hHHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHH
Confidence 11 223467999999999877 444444 56999999999999999999999999999999999999999
Q ss_pred HHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhc-CCch-HHHHH
Q 007337 540 QDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK-GGVY-TALVK 597 (607)
Q Consensus 540 ~~~l~~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~-~g~y-~~l~~ 597 (607)
.+.+.++. .+-|.++|||+++.+++ ||+|.||..|+|||.|+-+|+.++ .-.| +.|+.
T Consensus 149 lnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~Ll~ 211 (268)
T COG4608 149 LNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKALLS 211 (268)
T ss_pred HHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHHHHH
Confidence 99987654 37899999999999986 999999999999999999999874 3334 44554
No 312
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=2e-31 Score=256.42 Aligned_cols=158 Identities=23% Similarity=0.359 Sum_probs=133.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------eEEEcc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------ISIVSQ 444 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------i~~V~Q 444 (607)
|+++|++++|++ +.++ ++||+|++||+++|+|+||||| ++|++|
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccC
Confidence 789999999963 2455 5999999999999999999999 679999
Q ss_pred CCCc-ccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEE
Q 007337 445 EPVL-FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILL 523 (607)
Q Consensus 445 ~~~L-f~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~Ill 523 (607)
++.+ |+.|++|||.++......++++.++++.+++.++.. ....+||||||||++||||++++|+++|
T Consensus 78 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rl~la~al~~~p~~ll 146 (195)
T PRK13541 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLD-----------EKCYSLSSGMQKIVAIARLIACQSDLWL 146 (195)
T ss_pred CcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhc-----------cChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8754 789999999886431124566788888888765533 3467899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhhhhcCEEE
Q 007337 524 LDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSADTVA 569 (607)
Q Consensus 524 LDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~ItHrl~~l~~aD~Ii 569 (607)
|||||++||+.+.+.+.+.|+.. .+++|+|+|||+++.++.||.|.
T Consensus 147 lDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 147 LDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999743 35799999999999999999774
No 313
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.97 E-value=9.6e-32 Score=295.69 Aligned_cols=181 Identities=23% Similarity=0.416 Sum_probs=145.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|+...+.++|+|+||+|++||++||+|+|||||
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953213469999999999999999999999999
Q ss_pred -eEEEccCC---Ccc-cccHHHHhhcCCCCC------CCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 -ISIVSQEP---VLF-NCSIEENIAYGCDGK------ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 -i~~V~Q~~---~Lf-~gTIreNI~~g~~~~------~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
++||+|++ .+| +-|+.||+.++.... .+. +++.++++..++.+ -........|||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 408 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKT----------ASPELAIARLSG 408 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccC----------CCcccccccCCH
Confidence 68999996 355 569999998752100 111 22344444444321 012344568999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecC
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 581 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 581 (607)
|||||++||||++.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+..|+
T Consensus 409 G~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~ 488 (506)
T PRK13549 409 GNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLI 488 (506)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 4789999999999875 599999999999999998
Q ss_pred hhHHh
Q 007337 582 HEELL 586 (607)
Q Consensus 582 ~~eL~ 586 (607)
.+++.
T Consensus 489 ~~~~~ 493 (506)
T PRK13549 489 NHNLT 493 (506)
T ss_pred cccCC
Confidence 88763
No 314
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=1.9e-31 Score=257.23 Aligned_cols=159 Identities=25% Similarity=0.347 Sum_probs=133.1
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
|+++|++++|++ .++|+|+||+|++||+++|+||||||| ++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEE
Confidence 578999999964 369999999999999999999999999 689
Q ss_pred EccCCCccc-ccHHHHhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 442 VSQEPVLFN-CSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 442 V~Q~~~Lf~-gTIreNI~~g~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
++|++.+|+ .|++||+.++... ...++++.++++..++.+++.. ...+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-----------PAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-----------ChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 7999999875321 1123468888998888766532 23579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhhhhcCEEEE
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSADTVAV 570 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~ItHrl~~l~~aD~Iiv 570 (607)
+++||||||++||+.+.+.+.+.|+++ .+++|+|++||+...+.. |+++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-ARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEee
Confidence 999999999999999999999999886 357899999999865543 55543
No 315
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=6.1e-29 Score=299.14 Aligned_cols=183 Identities=20% Similarity=0.298 Sum_probs=155.1
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------e
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------I 439 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i 439 (607)
..|+++|++++|+++ ..++|+|+||+|++||++||+|++|||| |
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 359999999999742 3469999999999999999999999999 8
Q ss_pred EEEccCCCccc-ccHHHHhhcCC-CCCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 440 SIVSQEPVLFN-CSIEENIAYGC-DGKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 440 ~~V~Q~~~Lf~-gTIreNI~~g~-~~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
||+||++.+++ -|++||+.+.. ....++ +.+.++++.+++.+.... ....||||||||++|||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk-----------~~~~LSGGqKqRLslA~ 2083 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADR-----------LAGTYSGGNKRKLSTAI 2083 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcC-----------ChhhCCHHHHHHHHHHH
Confidence 99999998885 69999997631 001222 335566777777655332 34679999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
||+.+|+|++||||||+||+.+.+.+.+.|+++. +++|+|++||+++.++ -||+|++|++|+++..|+.++|.++-
T Consensus 2084 ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2084 ALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 9999999999999999999999999999998864 5799999999999886 49999999999999999999997653
No 316
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=7.3e-31 Score=315.60 Aligned_cols=182 Identities=23% Similarity=0.379 Sum_probs=156.7
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------e
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------I 439 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i 439 (607)
..|+++|+++.|+++ +.++++|+||++++||+++|+|+||||| +
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 469999999999633 3569999999999999999999999999 8
Q ss_pred EEEccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 440 SIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 440 ~~V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
+|+||++.+|+ -|++|||.++.. ...+ ++++.+.++..++.+. ......+||||||||++|||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~-----------~~~~~~~LSGGqKQRLsLAr 1074 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHK-----------RNEEAQDLSGGMQRKLSVAI 1074 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHHHHH
Confidence 99999999986 599999987421 0122 2346666777666543 23455789999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||+.+|+|+|||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+++..|+.++|.++
T Consensus 1075 ALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1075 AFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 99999999999999999999999999999999877899999999999886 5999999999999999999999775
No 317
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=8.9e-31 Score=260.04 Aligned_cols=170 Identities=25% Similarity=0.344 Sum_probs=136.8
Q ss_pred EECCCCCCCcccccceEEee-----CCCEEEEEcCCCCcc------------------------eEEEccCCC-cccccH
Q 007337 404 FAYPSRPNHMVLKGITLKLL-----SGSKIALVGPSGGGK------------------------ISIVSQEPV-LFNCSI 453 (607)
Q Consensus 404 f~y~~~~~~~vL~~isl~i~-----~Ge~vaiVG~sGsGK------------------------i~~V~Q~~~-Lf~gTI 453 (607)
|+|++. .+.++|++|+++ +||+++|+|+||||| ++|++|++. .++.|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCH
Confidence 678753 458899999987 689999999999999 899999987 478999
Q ss_pred HHHhhcCCCCCC-CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCC
Q 007337 454 EENIAYGCDGKA-SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 532 (607)
Q Consensus 454 reNI~~g~~~~~-~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD 532 (607)
+||+.+...... ..+...++++..++.+.. ......||||||||++|||||+++|+++||||||++||
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD 147 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999976532111 123355667666665432 23456799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEe--EecChhHHh
Q 007337 533 AESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIV--ESGTHEELL 586 (607)
Q Consensus 533 ~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Iv--e~G~~~eL~ 586 (607)
+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+++..+ ..++++++.
T Consensus 148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 148 VEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999998753 799999999999987 59999999775433 456666654
No 318
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.3e-31 Score=251.76 Aligned_cols=160 Identities=34% Similarity=0.554 Sum_probs=145.7
Q ss_pred cceEEeeCCCEEEEEcCCCCcc----------------------------------------eEEEccCCCcc-cccHHH
Q 007337 417 GITLKLLSGSKIALVGPSGGGK----------------------------------------ISIVSQEPVLF-NCSIEE 455 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGK----------------------------------------i~~V~Q~~~Lf-~gTIre 455 (607)
++||+.+.-..+||-|+||||| ||||+||.-|| .-|+|-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5788888889999999999999 99999999999 579999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHH
Q 007337 456 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAES 535 (607)
Q Consensus 456 NI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~t 535 (607)
|++||.. ..+.++..+++..-++...+..+| ..||||||||+||+|||+.+|++|+||||.|+||-..
T Consensus 96 NL~YG~~-~~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 96 NLRYGMW-KSMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred chhhhhc-ccchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 9999975 556778999999999999998887 6799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 536 EYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 536 e~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
.+.++-.|+++.+ +--+++|||.+..+ +-||+|++|++||+...|.-+|.++.
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 9999999988754 45799999999865 66999999999999999999998765
No 319
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=1e-30 Score=254.50 Aligned_cols=165 Identities=16% Similarity=0.219 Sum_probs=133.7
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcc-----------------eE-------EEccCCCcccc-cHHHHhhcCCC-CCCCH
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGK-----------------IS-------IVSQEPVLFNC-SIEENIAYGCD-GKASS 467 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i~-------~V~Q~~~Lf~g-TIreNI~~g~~-~~~~~ 467 (607)
+|+|+||+|++||+++|+||||||| +. .+.|++.+|+. |++|||.+... ...+.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~~~ 81 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGLDG 81 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCCCH
Confidence 6899999999999999999999999 32 24566778875 99999987421 12344
Q ss_pred HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 007337 468 ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM 547 (607)
Q Consensus 468 ~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~ 547 (607)
++..+.+.. ...|+..+++.++ .||||||||++||||++++|+++||||||+++|+.+.+.+.+.+.+..
T Consensus 82 ~~~~~~~~~------~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~ 151 (213)
T PRK15177 82 DEFSHFCYQ------LTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQL 151 (213)
T ss_pred HHHHHHHHH------HhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHh
Confidence 444333211 2334555555554 499999999999999999999999999999999999999999887666
Q ss_pred CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 548 KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 548 ~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+++|+|++||+++.+. .||+|++|++|++++.|+-+++.+.
T Consensus 152 ~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 193 (213)
T PRK15177 152 QQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATAL 193 (213)
T ss_pred hCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHH
Confidence 7789999999999986 6999999999999999998887643
No 320
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-30 Score=287.87 Aligned_cols=172 Identities=22% Similarity=0.368 Sum_probs=138.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|+++.|. .+|+|+||+|++||+++|+|||||||
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 38999999999999999999999999
Q ss_pred eEEEccCC---Cccc-ccHHHHhhcCCCC---------C-CCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCC
Q 007337 439 ISIVSQEP---VLFN-CSIEENIAYGCDG---------K-ASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500 (607)
Q Consensus 439 i~~V~Q~~---~Lf~-gTIreNI~~g~~~---------~-~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~ 500 (607)
++||+|++ .+|+ -|++||+.++... . .+. +++.++++..++. ++-.+ ..-..
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~----~~~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVN----QNITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCcc----Ccccc
Confidence 68999984 4665 5999999875210 0 011 1233444444332 01123 33456
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeE
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 578 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive 578 (607)
||||||||++|||||+++|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998763 4789999999998764 699999999999999
Q ss_pred ecCh
Q 007337 579 SGTH 582 (607)
Q Consensus 579 ~G~~ 582 (607)
.++.
T Consensus 490 ~~~~ 493 (510)
T PRK09700 490 ILTN 493 (510)
T ss_pred EecC
Confidence 8866
No 321
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.97 E-value=8.2e-31 Score=251.14 Aligned_cols=139 Identities=34% Similarity=0.517 Sum_probs=117.9
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------eEEEccCC--Ccccc
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------------ISIVSQEP--VLFNC 451 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------------i~~V~Q~~--~Lf~g 451 (607)
.++|+|+||+|++||+++|+|+||||| ++|++|+| .+|+.
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999 68999998 57889
Q ss_pred cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEec
Q 007337 452 SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 526 (607)
Q Consensus 452 TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE 526 (607)
|++|||.++.. ...+ ++++.++++..++.++.... ...||||||||++||||++++|+++||||
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERP-----------THCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999987521 0122 23566777777776654443 36799999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh
Q 007337 527 ATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST 561 (607)
Q Consensus 527 ~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~ 561 (607)
||++||+.+.+.+.+.|+++. +++|+|+|||+++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999998874 47899999999864
No 322
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=2.2e-30 Score=258.04 Aligned_cols=198 Identities=32% Similarity=0.447 Sum_probs=155.2
Q ss_pred cEEEEeEEEECCCC-CCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 396 EVELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~-~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
-++++|++..|... ....++++|||+|++||++|+||+|||||
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 37888887766422 24578999999999999999999999999
Q ss_pred ---------eEEEccCCCcc-------cccHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCC
Q 007337 439 ---------ISIVSQEPVLF-------NCSIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVR 500 (607)
Q Consensus 439 ---------i~~V~Q~~~Lf-------~gTIreNI~~g~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~ 500 (607)
|+.|+|+|.-= ..-|.|-|.+-+. ...-++++.+.++.+++.+-= -.+..-.-.
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~--------~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE--------KRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh--------hhhhhCCcc
Confidence 99999999731 1224455554321 122356677888888876521 112223467
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEe
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV 577 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Iv 577 (607)
||||||||+.||-||..+|++||-||||.|||....++|.+.|+++. .+..+++|||+|..++. ||+|+||.+|+||
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 99999999999999999999999999999999999999999998764 37899999999999975 9999999999999
Q ss_pred EecChhHHhhc-CCch-HHHHHHhhc
Q 007337 578 ESGTHEELLSK-GGVY-TALVKRQLQ 601 (607)
Q Consensus 578 e~G~~~eL~~~-~g~y-~~l~~~~~~ 601 (607)
|.|+-++|.+. .-.| ++|.+....
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~aeP~ 263 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAEPS 263 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcCCC
Confidence 99999999875 4555 455554433
No 323
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=3.5e-30 Score=243.51 Aligned_cols=178 Identities=29% Similarity=0.482 Sum_probs=149.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------e
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------I 439 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------i 439 (607)
++.++++.+|.. -.+++|+||++++||++|++||+|||| |
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 678999999974 368999999999999999999999999 7
Q ss_pred EEEccCCCcc-cccHHHHhhcCCCC-----------CC--CH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 440 SIVSQEPVLF-NCSIEENIAYGCDG-----------KA--SS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 440 ~~V~Q~~~Lf-~gTIreNI~~g~~~-----------~~--~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
+--+|.+-+| +-|+-||+..+... .. ++ ++-.+.|+.++| +-.-.+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL-----------~~~a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL-----------GELADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC-----------chhhcchhhcC
Confidence 7889999999 56999999987210 01 12 223334444444 44445667789
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeE
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 578 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive 578 (607)
|+||+.|+.|||||..+|++|+||||.++|.+.-...+.+.|+++.+ +.|+++|-|+++.+. -||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999988889999998874 489999999999876 599999999999999
Q ss_pred ecChhHHhhc
Q 007337 579 SGTHEELLSK 588 (607)
Q Consensus 579 ~G~~~eL~~~ 588 (607)
+|+++|..++
T Consensus 231 eG~P~eV~~d 240 (250)
T COG0411 231 EGTPEEVRNN 240 (250)
T ss_pred cCCHHHHhcC
Confidence 9999998765
No 324
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.7e-30 Score=234.70 Aligned_cols=178 Identities=28% Similarity=0.486 Sum_probs=150.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+.+|+|++-.. +.+|+++||+++|||.+||+||+|+|| -+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999998764 469999999999999999999999999 67
Q ss_pred EEccCCCc-ccccHHHHhhcCCCCC-----CCHHH--HHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 441 IVSQEPVL-FNCSIEENIAYGCDGK-----ASSAD--IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 441 ~V~Q~~~L-f~gTIreNI~~g~~~~-----~~~~~--i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+.||+..| |+-|++|-+.||+-+. ..+++ ..+++.++++..+-. ..=..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~-----------R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAG-----------RDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhc-----------cchhhcCchHHHHHHHH
Confidence 89999888 9999999999996311 22344 667888887765432 12357999999999999
Q ss_pred HHHhcC------CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh-hhhcCEEEEEeCCEEeEecChhH
Q 007337 513 RALMMN------PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST-VQSADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 513 RAll~~------~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~-l~~aD~Iivl~~G~Ive~G~~~e 584 (607)
|.|.+= +++|+|||||||||..-.+.+.+..+++. .+..|+.|-|+|+. ...||+|++|.+||++..|+++|
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 999853 35889999999999999999999988875 47899999999996 56899999999999999999999
Q ss_pred Hhhc
Q 007337 585 LLSK 588 (607)
Q Consensus 585 L~~~ 588 (607)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8764
No 325
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=2.3e-30 Score=284.72 Aligned_cols=179 Identities=22% Similarity=0.362 Sum_probs=141.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|+.+.+..+|+|+||+|++||+++|+|+|||||
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4999999999953212469999999999999999999999999
Q ss_pred -eEEEccCC---Cccc-ccHHHHhhcCCCC------CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 -ISIVSQEP---VLFN-CSIEENIAYGCDG------KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 -i~~V~Q~~---~Lf~-gTIreNI~~g~~~------~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
++||+|++ .+|+ -|++||+.++... ..+ ++++.++++..++.+ . ........|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~---~~~~~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT-------A---SPFLPIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC-------C---CccCccccCCH
Confidence 58999996 3554 6999999875210 011 123444555544321 0 12233457999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecC
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 581 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 581 (607)
|||||++||||++++|++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.+. .||+|++|++|+|+..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999988764 4789999999999886 599999999999998775
Q ss_pred hhH
Q 007337 582 HEE 584 (607)
Q Consensus 582 ~~e 584 (607)
-++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 443
No 326
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=5.5e-30 Score=233.42 Aligned_cols=136 Identities=34% Similarity=0.559 Sum_probs=110.2
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------eEEEccCCCcccccHHHHhhcCCCCCCCHHH
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------ISIVSQEPVLFNCSIEENIAYGCDGKASSAD 469 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~ 469 (607)
++++|++++|++ .++|+|+||++++||.++|+|+||||| .+..+ ..+|+| .+. ..
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~----~~~G~i----~~~--~~----- 62 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE----PDEGIV----TWG--ST----- 62 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC----CCceEE----EEC--Ce-----
Confidence 478999999964 369999999999999999999999999 23322 124443 111 00
Q ss_pred HHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCC
Q 007337 470 IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG 549 (607)
Q Consensus 470 i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~ 549 (607)
. .+.-.|+ ||+||+||++||||++++|+++||||||++||+.+...+.+.|+++ +
T Consensus 63 -----~------~i~~~~~------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~ 117 (144)
T cd03221 63 -----V------KIGYFEQ------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--P 117 (144)
T ss_pred -----E------EEEEEcc------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--C
Confidence 0 0111111 9999999999999999999999999999999999999999999886 5
Q ss_pred CeEEEEccCchhhhh-cCEEEEEeCCE
Q 007337 550 RTVLVIAHRLSTVQS-ADTVAVVSDGE 575 (607)
Q Consensus 550 ~TvI~ItHrl~~l~~-aD~Iivl~~G~ 575 (607)
+|+|++||+++.+.. ||+|++|++|+
T Consensus 118 ~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 118 GTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 899999999999865 89999999985
No 327
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.6e-30 Score=284.06 Aligned_cols=174 Identities=22% Similarity=0.352 Sum_probs=140.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|+++. .+++|+||+|++||++||+|||||||
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 5899999842 38999999999999999999999999
Q ss_pred eEEEccCCC---cc-cccHHHHhhcCCCCC-------CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 ISIVSQEPV---LF-NCSIEENIAYGCDGK-------AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 i~~V~Q~~~---Lf-~gTIreNI~~g~~~~-------~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
++|++|++. +| +.|+.||+.++.... .+ ++++.++++..++.+ ........+|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKT----------PSREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCccc----------CCccCccccCCH
Confidence 679999972 55 589999998753101 01 123444444444310 112333458999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecC
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 581 (607)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+ +.||+|++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998864 378999999999988 4699999999999999999
Q ss_pred hhHHh
Q 007337 582 HEELL 586 (607)
Q Consensus 582 ~~eL~ 586 (607)
.+|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 88754
No 328
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=1.3e-29 Score=281.43 Aligned_cols=179 Identities=22% Similarity=0.315 Sum_probs=145.1
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCC-Cc
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEP-VL 448 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~-~L 448 (607)
.-|+++|++++|++ .++|+|+||+|++||+++|+|+||||| ++||+|++ .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~ 399 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDAL 399 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhc
Confidence 35999999999964 369999999999999999999999999 79999997 55
Q ss_pred cc-ccHHHHhhcCCCC---CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q 007337 449 FN-CSIEENIAYGCDG---KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLL 524 (607)
Q Consensus 449 f~-gTIreNI~~g~~~---~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllL 524 (607)
+. -|++||+.++... ...+.+..++++..++.+.. .......||||||||++||||++.+|++|||
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~qrv~la~al~~~p~lllL 469 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGD----------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLL 469 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhH----------hcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 54 5999999875310 11233344556655553211 1233457999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeC-CEEe-EecChhHHhhc
Q 007337 525 DEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSD-GEIV-ESGTHEELLSK 588 (607)
Q Consensus 525 DE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~-G~Iv-e~G~~~eL~~~ 588 (607)
||||++||+.+...+.+.|.++ . .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++++.
T Consensus 470 DEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 470 DEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred cCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999886 3 599999999998764 999999996 7886 47888887654
No 329
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.7e-29 Score=284.41 Aligned_cols=175 Identities=27% Similarity=0.397 Sum_probs=144.7
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCcc
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLF 449 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf 449 (607)
..|+++|++|+|++. .++|+|+||+|++|++++|+||||||| ++|++|++. .
T Consensus 507 ~~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~-~ 583 (718)
T PLN03073 507 PIISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHV-D 583 (718)
T ss_pred ceEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEecccc-c
Confidence 359999999999642 368999999999999999999999999 889999873 3
Q ss_pred cccHHHHhhcC----CCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 007337 450 NCSIEENIAYG----CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525 (607)
Q Consensus 450 ~gTIreNI~~g----~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLD 525 (607)
.-++.+|..+. .+ ..+++++.++++..++.+.... .....||||||||++||||++++|++||||
T Consensus 584 ~l~~~~~~~~~~~~~~~-~~~~~~i~~~L~~~gl~~~~~~----------~~~~~LSgGqkqRvaLAraL~~~p~lLLLD 652 (718)
T PLN03073 584 GLDLSSNPLLYMMRCFP-GVPEQKLRAHLGSFGVTGNLAL----------QPMYTLSGGQKSRVAFAKITFKKPHILLLD 652 (718)
T ss_pred cCCcchhHHHHHHHhcC-CCCHHHHHHHHHHCCCChHHhc----------CCccccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 34566664321 12 3457788889998888643221 234689999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEe-EecChhHH
Q 007337 526 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESGTHEEL 585 (607)
Q Consensus 526 E~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Iv-e~G~~~eL 585 (607)
|||++||+.+...+.+.|.+. +.|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 653 EPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 653 EPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred CCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999998875 3599999999999874 9999999999998 67888764
No 330
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.1e-29 Score=237.90 Aligned_cols=146 Identities=24% Similarity=0.376 Sum_probs=109.9
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcc------eEEEccCCCcccccH----HHHhhcCCCCCCCHHHHHHHHHHcCch
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGK------ISIVSQEPVLFNCSI----EENIAYGCDGKASSADIENAAKMANAH 480 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGK------i~~V~Q~~~Lf~gTI----reNI~~g~~~~~~~~~i~~al~~a~l~ 480 (607)
..++|+|+||++++|++++|+||||||| +..-.-+.. +.+.+ ++++.+- .+ .
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~-~~~~~~~~~~~~~~~~------~q--~--------- 68 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKAR-LISFLPKFSRNKLIFI------DQ--L--------- 68 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEE-ECCcccccccccEEEE------hH--H---------
Confidence 4578999999999999999999999999 311000000 11110 1112221 11 2
Q ss_pred HHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC--CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEcc
Q 007337 481 DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN--PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAH 557 (607)
Q Consensus 481 ~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~--~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItH 557 (607)
++++.++-+.. ...+...+||||||||++||||++++ |+++||||||++||+++.+.+.+.|+++. .++|+|+|||
T Consensus 69 ~~l~~~~L~~~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 69 QFLIDVGLGYL-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred HHHHHcCCCcc-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 34444432221 25667889999999999999999999 99999999999999999999999998875 4899999999
Q ss_pred CchhhhhcCEEEEEeCCE
Q 007337 558 RLSTVQSADTVAVVSDGE 575 (607)
Q Consensus 558 rl~~l~~aD~Iivl~~G~ 575 (607)
+++.+..||+|++|++|+
T Consensus 148 ~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 148 NLDVLSSADWIIDFGPGS 165 (176)
T ss_pred CHHHHHhCCEEEEECCCC
Confidence 999999999999997643
No 331
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.97 E-value=4.2e-30 Score=265.73 Aligned_cols=139 Identities=35% Similarity=0.557 Sum_probs=118.2
Q ss_pred eEEEccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 439 ISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 439 i~~V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
++||+|++.+|+. |++|||.++.. ...+ ++++.++++..++.++.... ..+||||||||++||
T Consensus 44 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGq~qRvala 112 (325)
T TIGR01187 44 INMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRK-----------PHQLSGGQQQRVALA 112 (325)
T ss_pred EEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCC-----------hhhCCHHHHHHHHHH
Confidence 8999999999975 99999998631 0122 23566777777776654443 357999999999999
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||+++|+++|||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+.
T Consensus 113 raL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 113 RALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999999988753 789999999999865 5999999999999999999999865
No 332
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2e-29 Score=283.06 Aligned_cols=175 Identities=25% Similarity=0.405 Sum_probs=146.7
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCC--C
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEP--V 447 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~--~ 447 (607)
..|+++|++++|++ .++|+|+||+|++|+++||+||||||| ++|++|++ .
T Consensus 311 ~~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~ 387 (638)
T PRK10636 311 PLLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEF 387 (638)
T ss_pred ceEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhh
Confidence 35999999999963 369999999999999999999999999 79999985 3
Q ss_pred cc-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchH-HHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 007337 448 LF-NCSIEENIAYGCDGKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525 (607)
Q Consensus 448 Lf-~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~-~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLD 525 (607)
+. +.|+.+|+....+ ...++++.++++..++.+ .. + .....||||||||++||||++++|++||||
T Consensus 388 l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~-------~----~~~~~LSgGekqRl~La~~l~~~p~lLlLD 455 (638)
T PRK10636 388 LRADESPLQHLARLAP-QELEQKLRDYLGGFGFQGDKV-------T----EETRRFSGGEKARLVLALIVWQRPNLLLLD 455 (638)
T ss_pred CCccchHHHHHHHhCc-hhhHHHHHHHHHHcCCChhHh-------c----CchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 44 3488998753222 334566777787777642 22 2 233579999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEe-EecChhHHh
Q 007337 526 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV-ESGTHEELL 586 (607)
Q Consensus 526 E~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Iv-e~G~~~eL~ 586 (607)
|||++||+.+...+.+.|.++ +.|+|+|||++..+. .||+|++|++|+|+ ..|++++..
T Consensus 456 EPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 456 EPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred CCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999987 459999999999986 49999999999997 689998874
No 333
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.4e-30 Score=232.59 Aligned_cols=173 Identities=30% Similarity=0.468 Sum_probs=142.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------eEEEccC
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------ISIVSQE 445 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------i~~V~Q~ 445 (607)
+..++++.+|+.. ..++|+|+|++|.+||.|+++||||||| =++|+|+
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 5678899999876 3569999999999999999999999999 5899999
Q ss_pred CCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 446 PVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 446 ~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
+-|++ -|+.||+.||-. ...+ .+...+.+..++|.++=. ..--.||||||||+.|||||.-+|
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiARALa~eP 151 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIARALAVEP 151 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHHHhhcCc
Confidence 98885 799999999842 0112 223445566666655421 123579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchh-hhhcCEEEEEe--CCEEeEecC
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLST-VQSADTVAVVS--DGEIVESGT 581 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~-l~~aD~Iivl~--~G~Ive~G~ 581 (607)
+.|+||||++|||+-|.+++++.|.++. .+|-+++|||.++. +--|++++||. .|||++.=+
T Consensus 152 ~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 152 QLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred ceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 9999999999999999999999987764 48999999999975 56799999997 489998643
No 334
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=2.3e-29 Score=279.32 Aligned_cols=177 Identities=24% Similarity=0.337 Sum_probs=143.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCC-cc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPV-LF 449 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~-Lf 449 (607)
.|+++|++++|++ .++|+|+||+|++|++++|+|+||||| |+|++|++. ++
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALD 398 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccC
Confidence 5999999999964 369999999999999999999999999 799999973 55
Q ss_pred -cccHHHHhhcCCCC-CCC--HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 007337 450 -NCSIEENIAYGCDG-KAS--SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525 (607)
Q Consensus 450 -~gTIreNI~~g~~~-~~~--~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLD 525 (607)
+-|++||+.++... ..+ +.+..++++..++.+. ........||||||||++||||++.+|++||||
T Consensus 399 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD 468 (552)
T TIGR03719 399 PNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS----------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468 (552)
T ss_pred CCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh----------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 46999999886320 111 2334455555554321 122334679999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeC-CEEe-EecChhHHhh
Q 007337 526 EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSD-GEIV-ESGTHEELLS 587 (607)
Q Consensus 526 E~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~-G~Iv-e~G~~~eL~~ 587 (607)
|||++||+.+...+.+.|+++ ..|+|+|||+++.+.. ||+|++|++ |+++ ..|++++..+
T Consensus 469 EPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 469 EPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred CCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999987 3599999999998864 999999997 5876 4688877644
No 335
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.96 E-value=2.3e-29 Score=264.33 Aligned_cols=174 Identities=34% Similarity=0.497 Sum_probs=144.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-++++|++.+|+. .++|+|+||++.+||..|++|.+|+||
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4899999999974 479999999999999999999999999
Q ss_pred eEEEccCCCcc-cccHHHHhhcCCCCC-----CCHHHHHHHHHHcCchHHHHhCC--ccccccccCCCCCCChhHHHHHH
Q 007337 439 ISIVSQEPVLF-NCSIEENIAYGCDGK-----ASSADIENAAKMANAHDFISNFP--EKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 i~~V~Q~~~Lf-~gTIreNI~~g~~~~-----~~~~~i~~al~~a~l~~~i~~lp--~G~~T~ige~G~~LSGGQkQRia 510 (607)
|+.|.||..|+ +-||.|||-+|+++. .+..++.+.++. .+..+- ...+++|+ +||+||||-++
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~-----~l~~lg~~~~~~~~v~----~LsiaqrQ~Ve 155 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARE-----LLARLGLDIDPDTLVG----DLSIAQRQMVE 155 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHH-----HHHHcCCCCChhhhhh----hCCHHHHHHHH
Confidence 99999999998 689999999997521 233444433332 122221 12555555 59999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecC
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 581 (607)
||||+..+++|+|||||||+|+.+-.+.+.+.++++. ++.++|+||||++.+ +-||+|.||.||+.+..++
T Consensus 156 IArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999997788888888875 689999999999876 5699999999999988776
No 336
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.96 E-value=5.7e-30 Score=281.30 Aligned_cols=172 Identities=23% Similarity=0.397 Sum_probs=139.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|+++ ++|+|+||+|++||+++|+|+|||||
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 589999973 26999999999999999999999999
Q ss_pred eEEEccCC---Ccc-cccHHHHhhcCCCCC-------CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 ISIVSQEP---VLF-NCSIEENIAYGCDGK-------AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 i~~V~Q~~---~Lf-~gTIreNI~~g~~~~-------~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
++||+|++ .+| +-|++||+.++.... .+ ++++.++++.+++. +-........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCchhhCCH
Confidence 69999997 344 579999998742100 11 12344444444431 1123345567999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecC
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 581 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 581 (607)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999999875 4789999999999875 599999999999999998
Q ss_pred hhHH
Q 007337 582 HEEL 585 (607)
Q Consensus 582 ~~eL 585 (607)
.+++
T Consensus 479 ~~~~ 482 (501)
T PRK10762 479 REQA 482 (501)
T ss_pred cccC
Confidence 7765
No 337
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=1.8e-29 Score=279.33 Aligned_cols=169 Identities=28% Similarity=0.337 Sum_probs=143.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------eEEEccCCCc-ccc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVL-FNC 451 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~~~L-f~g 451 (607)
-++++|++++|++ ..|+++||+|++||+++|+|+||||| ++|+||++.+ ++.
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~ 415 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDG 415 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCC
Confidence 5899999999963 25899999999999999999999999 7999999875 578
Q ss_pred cHHHHhhcCCCCCCC-HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCC
Q 007337 452 SIEENIAYGCDGKAS-SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 530 (607)
Q Consensus 452 TIreNI~~g~~~~~~-~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSa 530 (607)
|++||+.++.. ..+ +....++++..++.+... ..-..||||||||++|||||+++|++|||||||++
T Consensus 416 tv~e~l~~~~~-~~~~~~~~~~~L~~l~l~~~~~-----------~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~ 483 (590)
T PRK13409 416 TVEDLLRSITD-DLGSSYYKSEIIKPLQLERLLD-----------KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAH 483 (590)
T ss_pred cHHHHHHHHhh-hcChHHHHHHHHHHCCCHHHHh-----------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 99999988632 222 334667788777765432 23456999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecC
Q 007337 531 LDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGT 581 (607)
Q Consensus 531 LD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~ 581 (607)
||+.+...+.+.|+++.+ ++|+|+|||++..+. .||+|++|++ ++...|+
T Consensus 484 LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 484 LDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999998743 789999999999876 5999999965 8877776
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=3.9e-29 Score=281.30 Aligned_cols=175 Identities=26% Similarity=0.393 Sum_probs=144.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCC-Ccc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEP-VLF 449 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~-~Lf 449 (607)
-|+++|++++|++ .++|+|+||+|++|+++||+|+||||| |+|++|++ .++
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~~~l~ 395 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHRAELD 395 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcccccC
Confidence 5899999999964 369999999999999999999999999 89999986 355
Q ss_pred c-ccHHHHhhcCCCCCC--C--HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q 007337 450 N-CSIEENIAYGCDGKA--S--SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLL 524 (607)
Q Consensus 450 ~-gTIreNI~~g~~~~~--~--~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllL 524 (607)
+ -|+.||+.++.+ .. + +.++.+.++..++.+. -.++. ...||||||||++||||++.+|++|||
T Consensus 396 ~~~tv~e~l~~~~~-~~~~~~~~~~~~~~l~~~~l~~~------~~~~~----~~~LSgGekqRl~la~al~~~p~lLlL 464 (635)
T PRK11147 396 PEKTVMDNLAEGKQ-EVMVNGRPRHVLGYLQDFLFHPK------RAMTP----VKALSGGERNRLLLARLFLKPSNLLIL 464 (635)
T ss_pred CCCCHHHHHHhhcc-cccccchHHHHHHHHHhcCCCHH------HHhCh----hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4 599999987632 11 2 3345555665555321 12233 356999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEe-CCEEeE-ecChhHHh
Q 007337 525 DEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVS-DGEIVE-SGTHEELL 586 (607)
Q Consensus 525 DE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~-~G~Ive-~G~~~eL~ 586 (607)
||||++||+.+...+.+.|++. +.|+|+|||+++.+. .||+|++|+ +|+|.+ .|+|++-+
T Consensus 465 DEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~ 527 (635)
T PRK11147 465 DEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDAR 527 (635)
T ss_pred cCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHH
Confidence 9999999999999999999886 569999999999886 599999998 899977 57888764
No 339
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=3.3e-29 Score=300.08 Aligned_cols=181 Identities=27% Similarity=0.422 Sum_probs=152.2
Q ss_pred cEEEEeEEEECCCC----------CCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------
Q 007337 396 EVELDDVWFAYPSR----------PNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~----------~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------- 438 (607)
.+.++||+|..+.. ....+|+|+|++++||+++||+|||||||
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999987531 12369999999999999999999999999
Q ss_pred --------eEEEccCCCccc-ccHHHHhhcCC----CCCCCHH----HHHHHHHHcCchHHHHhCCccccccccCCC-CC
Q 007337 439 --------ISIVSQEPVLFN-CSIEENIAYGC----DGKASSA----DIENAAKMANAHDFISNFPEKYQTFVGERG-VR 500 (607)
Q Consensus 439 --------i~~V~Q~~~Lf~-gTIreNI~~g~----~~~~~~~----~i~~al~~a~l~~~i~~lp~G~~T~ige~G-~~ 500 (607)
++||+|++.++. .|++|||.+.. +.+.+++ .+.++++..++.+. .|+.+|..+ ..
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-------~~~~vg~~~~~~ 1019 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-------KDAIVGLPGVTG 1019 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-------hCCccCCCCCCC
Confidence 799999987765 69999998742 2123332 36677888777543 477787655 68
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEeC-CEE
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSD-GEI 576 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~--l~~aD~Iivl~~-G~I 576 (607)
||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +++|+|+++|+++. ...+|++++|++ |++
T Consensus 1020 LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 99999999999999999999999999999999999999999999874 47999999999984 578999999996 899
Q ss_pred eEecChh
Q 007337 577 VESGTHE 583 (607)
Q Consensus 577 ve~G~~~ 583 (607)
+..|+..
T Consensus 1100 v~~G~~~ 1106 (1470)
T PLN03140 1100 IYSGPLG 1106 (1470)
T ss_pred EEECCcc
Confidence 9999853
No 340
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.96 E-value=1.5e-29 Score=252.28 Aligned_cols=166 Identities=25% Similarity=0.332 Sum_probs=129.0
Q ss_pred EeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------e-----------------------
Q 007337 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------I----------------------- 439 (607)
Q Consensus 400 ~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i----------------------- 439 (607)
.||+++|+.. .++|+|+| .+++||+++|+|+||||| |
T Consensus 4 ~~~~~~y~~~--~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGPN--SFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecCc--chhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 3688999643 36899999 499999999999999999 3
Q ss_pred ---------EEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 440 ---------SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 440 ---------~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
+|++|++.+++.++.+|+...-.....++++.++++..++.+. +.....+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhhCCHHHHHHHH
Confidence 3445665555544444443321111124557777777766443 33456789999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
||||++++|+++|||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+ |+|++.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999988754 699999999999988 599999995 6676654
No 341
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=2.2e-29 Score=276.17 Aligned_cols=172 Identities=26% Similarity=0.356 Sum_probs=138.0
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++|++++|++ ..+|+|+||+|++||+++|+|||||||
T Consensus 259 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~ 335 (490)
T PRK10938 259 PRIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 (490)
T ss_pred ceEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHH
Confidence 35999999999964 359999999999999999999999999
Q ss_pred --eEEEccCCCccc---ccHHHHhhcCCC------CCCC---HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 --ISIVSQEPVLFN---CSIEENIAYGCD------GKAS---SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 --i~~V~Q~~~Lf~---gTIreNI~~g~~------~~~~---~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++|++|++.++. .|+++|+.++.. .... ++++.++++..++.+. ........||||
T Consensus 336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG 405 (490)
T PRK10938 336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWG 405 (490)
T ss_pred hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHH
Confidence 578899886642 477777654310 0011 2346666777666431 122334679999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEccCchhhhh--cCEEEEEeCCEEeEe
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTVQS--ADTVAVVSDGEIVES 579 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~-~TvI~ItHrl~~l~~--aD~Iivl~~G~Ive~ 579 (607)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ + .|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 406 q~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 406 QQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999999988753 3 469999999999964 899999999999865
No 342
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.96 E-value=2.3e-29 Score=276.68 Aligned_cols=175 Identities=23% Similarity=0.339 Sum_probs=139.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++. .+|+|+||+|++|+++||+|+|||||
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 15999999999999999999999999
Q ss_pred eEEEccCC---Cccc-ccHHHHhhcCC----CCCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ISIVSQEP---VLFN-CSIEENIAYGC----DGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 i~~V~Q~~---~Lf~-gTIreNI~~g~----~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++||||++ .+|. -|+.||+.... +.... ++++.++++..++. + .........||||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~----~~~~~~~~~LSgG~k 409 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIK------F----NHAEQAARTLSGGNQ 409 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCC------C----CCccCccccCCcHHH
Confidence 68999986 3564 59999995420 00001 12233444443332 0 123344567999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|+..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 4789999999999886 499999999999999998887
Q ss_pred Hhhc
Q 007337 585 LLSK 588 (607)
Q Consensus 585 L~~~ 588 (607)
+.+.
T Consensus 490 ~~~~ 493 (510)
T PRK15439 490 INVD 493 (510)
T ss_pred CCHH
Confidence 6543
No 343
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.96 E-value=7.9e-26 Score=231.81 Aligned_cols=477 Identities=18% Similarity=0.243 Sum_probs=303.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 74 IATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARL 153 (607)
Q Consensus 74 ~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 153 (607)
.-.++.+..+.+++.++-+=+.++..+..... ..-.+..+ .|+++.+=+..+.+..+ |+....+..++.++
T Consensus 122 ~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~----r~F~~~Ll-kW~liaiPAtFvNS~Ir----yle~klaLafrtrL 192 (728)
T KOG0064|consen 122 AQSFFLISRTFLSLFVAKLDGQLVKNIVRKRG----RQFLWDLL-KWFLIAIPASFVNSAIR----YLESKLALAFRTRL 192 (728)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhH----HHHHHHHH-HHHhhhccHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 34445555666666666666777776654321 11112222 33333332333333333 34444455556666
Q ss_pred HHHHHHHHhcCCchhhcccC-ch---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----H
Q 007337 154 RKNLFSHLINQEIAFYDVTR-TG---ELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLA----L 225 (607)
Q Consensus 154 r~~~~~~ll~~~~~~~~~~~-~G---~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~----l 225 (607)
....|+..+... .||.-.+ -| ..=|++++|+..+.+...+.+.++.-.++-++++-..+...+...+.-. .
T Consensus 193 ~~h~y~~Y~snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~ 271 (728)
T KOG0064|consen 193 TRHAYDMYLSNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAG 271 (728)
T ss_pred HHHHHHHHhccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhh
Confidence 666666655544 4443221 22 2235788999888877777666665555444444444433322221111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 226 VVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFF 305 (607)
Q Consensus 226 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (607)
+++.+...+.+.+..+..++..+...........=+..+.+-+.|-.|+-.+.+.++.++..+..........+...++.
T Consensus 272 lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~Yi 351 (728)
T KOG0064|consen 272 LVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYI 351 (728)
T ss_pred hHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223334444455556666666666666667788999999999999999999998888877765555444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HhcCCcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 306 GGLNAASTLSVIVVVIYGANL------------TITGSMT--------PGALTSFILYSLTVGSSVSGLSSLYTVAMKAA 365 (607)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~------------~~~g~lt--------~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 365 (607)
.+-+++.-- .|-|.-+ ...+... .-.+++.=.+.......+..+.+.+.++.+..
T Consensus 352 MleqF~mKY-----vWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLa 426 (728)
T KOG0064|consen 352 MLEQFVMKY-----TWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLA 426 (728)
T ss_pred HHHHHHHHH-----hhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443333211 1211111 1112211 11223333344455566677777888888888
Q ss_pred HHHHHHHHHhccCC-------------CCCCC------CCCCCCCC-----CCCcEEEEeEEEECCCCCCCcccccceEE
Q 007337 366 GASRRVFQLLDRVS-------------SMPKS------GNQCPLGD-----QDGEVELDDVWFAYPSRPNHMVLKGITLK 421 (607)
Q Consensus 366 ~~~~ri~~~l~~~~-------------~~~~~------~~~~~~~~-----~~~~I~~~~vsf~y~~~~~~~vL~~isl~ 421 (607)
..-.|+.+.++.-. +..+. .+..|.+. ....|.++||-.--|.. .-+...++|+
T Consensus 427 Gyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~--~vvv~~Ltf~ 504 (728)
T KOG0064|consen 427 GYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAG--DVLVPKLTFQ 504 (728)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCc--ceeecceeEE
Confidence 88888876553111 10000 00111111 12348899987776654 3578999999
Q ss_pred eeCCCEEEEEcCCCCcc-------------------------eEEEccCCCcccccHHHHhhcCCC------CCCCHHHH
Q 007337 422 LLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFNCSIEENIAYGCD------GKASSADI 470 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~gTIreNI~~g~~------~~~~~~~i 470 (607)
|++|..+.|.||+|||| +-|+||.|+.=-||+||.|-+-+. ..++|.++
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL 584 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDL 584 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHH
Confidence 99999999999999999 899999999999999999988532 35788999
Q ss_pred HHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCC
Q 007337 471 ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR 550 (607)
Q Consensus 471 ~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~ 550 (607)
++.++.+.|+. |.+-..|+|. +.+--.-||||+|||++.||.+|++|+--+|||+|||+-.+-|..+.++.++. +-
T Consensus 585 ~~iL~~v~L~~-i~qr~~g~da-~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi 660 (728)
T KOG0064|consen 585 EAILDIVHLEH-ILQREGGWDA-VRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GI 660 (728)
T ss_pred HHHHHHhhHHH-HHHhccChhh-hccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--Cc
Confidence 99999999975 5555667664 34445679999999999999999999999999999999999999999999885 89
Q ss_pred eEEEEccCchhhhhcCEEEEE
Q 007337 551 TVLVIAHRLSTVQSADTVAVV 571 (607)
Q Consensus 551 TvI~ItHrl~~l~~aD~Iivl 571 (607)
+.|-||||++..+.-..++-.
T Consensus 661 ~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 661 SLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred eEEEeecCccHHHHHHHHHhc
Confidence 999999999988766665555
No 344
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.96 E-value=1.7e-25 Score=224.52 Aligned_cols=273 Identities=27% Similarity=0.456 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 73 IIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAR 152 (607)
Q Consensus 73 ~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (607)
++++++.++..++.++.|++++.++|.+...... .......+.+.++++.++...+.....+...+.+.++..+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD------NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKD 75 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888889999999999999986544321 0112223333333444445555556666677899999999
Q ss_pred HHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007337 153 LRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTLLALVVVPAIS 232 (607)
Q Consensus 153 lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~ 232 (607)
+|.++++|+++.|.++|+++++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|+++++.+++.|+..
T Consensus 76 l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~ 155 (275)
T PF00664_consen 76 LRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLF 155 (275)
T ss_dssp HHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 233 VAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNAAS 312 (607)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (607)
++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..+..........++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (275)
T PF00664_consen 156 LISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFIS 235 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889889
Q ss_pred HHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 007337 313 TLSVIVVVIYGANL-TITGSMTPGALTSFILYSLTVGSSV 351 (607)
Q Consensus 313 ~~~~~~~~~~g~~~-~~~g~lt~g~l~~~~~~~~~~~~~l 351 (607)
.+..++++++|+++ +.+|.+|+|.++++..+...+..|+
T Consensus 236 ~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 236 YLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 88889999999999 9999999999999999999988885
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.9e-28 Score=272.57 Aligned_cols=174 Identities=21% Similarity=0.313 Sum_probs=136.7
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCcccc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFNC 451 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~g 451 (607)
|+++|++++|+. .++|+|+||+|++|+++|||||||||| ++|++|++..+..
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~ 78 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQ 78 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCC
Confidence 789999999964 369999999999999999999999999 6899998766666
Q ss_pred cHHHHhhcCCCCCC---------------------------------CHHHHHHHHHHcCchHHHHhCCcccc-ccccCC
Q 007337 452 SIEENIAYGCDGKA---------------------------------SSADIENAAKMANAHDFISNFPEKYQ-TFVGER 497 (607)
Q Consensus 452 TIreNI~~g~~~~~---------------------------------~~~~i~~al~~a~l~~~i~~lp~G~~-T~ige~ 497 (607)
|+.+++.-... .+ .++++.++++.. |+. ......
T Consensus 79 ~~~~~v~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l-----------gl~~~~~~~~ 146 (638)
T PRK10636 79 PALEYVIDGDR-EYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL-----------GFSNEQLERP 146 (638)
T ss_pred CHHHHHHHhhH-HHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-----------CCCchhhcCc
Confidence 77666542100 00 011222222222 222 122334
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEE
Q 007337 498 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 576 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~I 576 (607)
-..||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. +.|+|+|||+...+. .||+|++|++|++
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 5679999999999999999999999999999999999999999999875 579999999999986 5999999999999
Q ss_pred eE-ecChhHHhh
Q 007337 577 VE-SGTHEELLS 587 (607)
Q Consensus 577 ve-~G~~~eL~~ 587 (607)
+. .|+|++...
T Consensus 225 ~~~~g~~~~~~~ 236 (638)
T PRK10636 225 FEYTGNYSSFEV 236 (638)
T ss_pred EEecCCHHHHHH
Confidence 74 788877654
No 346
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.7e-28 Score=269.03 Aligned_cols=177 Identities=20% Similarity=0.350 Sum_probs=134.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++| .++|+|+||+|++||+++|+|+|||||
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 59999999974 248999999999999999999999999
Q ss_pred eEEEccCCC---ccc-ccHHHH-----hhcCCCC-C-CCHHHHHHHHHHcCchHHHHhCCccccc-cccCCCCCCChhHH
Q 007337 439 ISIVSQEPV---LFN-CSIEEN-----IAYGCDG-K-ASSADIENAAKMANAHDFISNFPEKYQT-FVGERGVRLSGGQK 506 (607)
Q Consensus 439 i~~V~Q~~~---Lf~-gTIreN-----I~~g~~~-~-~~~~~i~~al~~a~l~~~i~~lp~G~~T-~ige~G~~LSGGQk 506 (607)
++|++|++. +|. .|+.+| +.+.... . .+..+..+. +.+.++.+ |+.. ........||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSD-----TQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHH-----HHHHHHhc--CccCCCcccccccCCcHHH
Confidence 578999853 454 567666 4322110 0 111111111 12233333 2211 13445568999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~e 584 (607)
||++||||++++|+||||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999997764 4789999999999875 699999999999998776543
No 347
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=9.6e-28 Score=270.05 Aligned_cols=183 Identities=22% Similarity=0.442 Sum_probs=136.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCc-c
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVL-F 449 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~L-f 449 (607)
-|+++|++++|++ .++|+|+||+|++|+++||+||||||| ++|++|++.. .
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~ 79 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV 79 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC
Confidence 3899999999964 369999999999999999999999999 5788887643 3
Q ss_pred cccHHHHhhcCCC-----------------CCCCHHHHHHH------HHH-------cCchHHHHhCCccccccccCCCC
Q 007337 450 NCSIEENIAYGCD-----------------GKASSADIENA------AKM-------ANAHDFISNFPEKYQTFVGERGV 499 (607)
Q Consensus 450 ~gTIreNI~~g~~-----------------~~~~~~~i~~a------l~~-------a~l~~~i~~lp~G~~T~ige~G~ 499 (607)
.+|+.+++..+.. .+..++.+... +.. ..+.+.++.+ |+. ....-.
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~--~~~~~~ 155 (635)
T PRK11147 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GLD--PDAALS 155 (635)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CCC--CCCchh
Confidence 4677777542210 00000000000 000 0111222222 221 123446
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeE
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVE 578 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive 578 (607)
.||||||||++|||||+.+|+||||||||++||+++...+.+.|.++ +.|+|+|||+...+.. ||+|++|++|+++.
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 79999999999999999999999999999999999999999999887 4699999999999865 99999999999985
Q ss_pred -ecChhHHhh
Q 007337 579 -SGTHEELLS 587 (607)
Q Consensus 579 -~G~~~eL~~ 587 (607)
.|+|++.++
T Consensus 234 ~~g~~~~~~~ 243 (635)
T PRK11147 234 YPGNYDQYLL 243 (635)
T ss_pred ecCCHHHHHH
Confidence 599887654
No 348
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=5.3e-28 Score=237.49 Aligned_cols=167 Identities=23% Similarity=0.368 Sum_probs=118.8
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcceEE-----------------------------EccCCC---cc-cccHHHHh
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGKISI-----------------------------VSQEPV---LF-NCSIEENI 457 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGKi~~-----------------------------V~Q~~~---Lf-~gTIreNI 457 (607)
+.++|+|+||+|++||+++|+|+|||||-.+ .+++.. ++ .-++.+|.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 4579999999999999999999999999111 122111 11 12444554
Q ss_pred hcCCCCCCCHH---HHHHHHHH----c---CchHHHHhCCccccc-cccCCCCCCChhHHHHHHHHHHHhcCC--CEEEE
Q 007337 458 AYGCDGKASSA---DIENAAKM----A---NAHDFISNFPEKYQT-FVGERGVRLSGGQKQRVAIARALMMNP--RILLL 524 (607)
Q Consensus 458 ~~g~~~~~~~~---~i~~al~~----a---~l~~~i~~lp~G~~T-~ige~G~~LSGGQkQRialARAll~~~--~IllL 524 (607)
...+| ..+-. ++.+.... . ...+.++.+ |+.. ........||||||||++||||++++| +++||
T Consensus 87 ~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 87 TSRNP-RSTVGTVTEIYDYLRLLFARVGIRERLGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCCC-CccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 33222 11100 00000000 0 001233333 3332 245677889999999999999999998 59999
Q ss_pred eccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCCEEeEec
Q 007337 525 DEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESG 580 (607)
Q Consensus 525 DE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl------~~G~Ive~G 580 (607)
||||++||+.+...+.+.|+++. +++|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99999999999999999998764 478999999999999999999999 999999987
No 349
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.95 E-value=4.6e-28 Score=227.07 Aligned_cols=138 Identities=30% Similarity=0.378 Sum_probs=106.1
Q ss_pred EeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHH
Q 007337 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIEN 472 (607)
Q Consensus 400 ~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~ 472 (607)
.|++++|++ .++++++ |++++||+++|+||||||| .++.+. .+|+|+ +.. ..
T Consensus 4 ~~l~~~~~~---~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p----~~G~i~----~~g-~~-------- 62 (177)
T cd03222 4 PDCVKRYGV---FFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP----NGDNDE----WDG-IT-------- 62 (177)
T ss_pred CCeEEEECC---EEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCC----CCcEEE----ECC-EE--------
Confidence 578899963 3688884 9999999999999999999 333221 133332 100 00
Q ss_pred HHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CC
Q 007337 473 AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GR 550 (607)
Q Consensus 473 al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~ 550 (607)
+.-+|+-. .||||||||++||||++++|++++|||||++||+++.+.+.+.|+++.+ ++
T Consensus 63 ----------i~~~~q~~---------~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~ 123 (177)
T cd03222 63 ----------PVYKPQYI---------DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKK 123 (177)
T ss_pred ----------EEEEcccC---------CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCC
Confidence 00001100 1999999999999999999999999999999999999999999988643 38
Q ss_pred eEEEEccCchhhh-hcCEEEEEeCCEEe
Q 007337 551 TVLVIAHRLSTVQ-SADTVAVVSDGEIV 577 (607)
Q Consensus 551 TvI~ItHrl~~l~-~aD~Iivl~~G~Iv 577 (607)
|+|+|||+++.+. .||+|++|+++-.+
T Consensus 124 tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 124 TALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 9999999999987 59999999987554
No 350
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.5e-27 Score=236.53 Aligned_cols=94 Identities=32% Similarity=0.513 Sum_probs=85.3
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHHhcC---CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh
Q 007337 489 KYQT-FVGERGVRLSGGQKQRVAIARALMMN---PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 489 G~~T-~ige~G~~LSGGQkQRialARAll~~---~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~ 563 (607)
|+.. .+++....||||||||++|||||.++ |+++||||||++||+++...+.+.|+++. ++.|+|+|+|+++.++
T Consensus 157 gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~ 236 (261)
T cd03271 157 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK 236 (261)
T ss_pred CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4444 36788899999999999999999996 79999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEE------eCCEEeEecCh
Q 007337 564 SADTVAVV------SDGEIVESGTH 582 (607)
Q Consensus 564 ~aD~Iivl------~~G~Ive~G~~ 582 (607)
.||+|++| ++|+|+++|++
T Consensus 237 ~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 237 CADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999 89999999974
No 351
>PLN03073 ABC transporter F family; Provisional
Probab=99.95 E-value=6.5e-27 Score=263.54 Aligned_cols=186 Identities=20% Similarity=0.305 Sum_probs=135.8
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------eEEEccCCCcccccHH
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------ISIVSQEPVLFNCSIE 454 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------i~~V~Q~~~Lf~gTIr 454 (607)
..|+++|++|+|++ .++|+|+||+|++|+++||||+||||| |+|++|++.-.+-|+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 35999999999964 359999999999999999999999999 5688898654443553
Q ss_pred HHhhcCCC---------------------------------CCCCH----HHHHHHHHHcCch----------HHHHhCC
Q 007337 455 ENIAYGCD---------------------------------GKASS----ADIENAAKMANAH----------DFISNFP 487 (607)
Q Consensus 455 eNI~~g~~---------------------------------~~~~~----~~i~~al~~a~l~----------~~i~~lp 487 (607)
|.+.-... ...+. +++.++++..++. +.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 33211000 00011 1222322222211 112221
Q ss_pred ccccc-cccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-c
Q 007337 488 EKYQT-FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-A 565 (607)
Q Consensus 488 ~G~~T-~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-a 565 (607)
|++. .....-.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 2211 112223579999999999999999999999999999999999999999999886 7899999999999876 9
Q ss_pred CEEEEEeCCEEe-EecChhHHhh
Q 007337 566 DTVAVVSDGEIV-ESGTHEELLS 587 (607)
Q Consensus 566 D~Iivl~~G~Iv-e~G~~~eL~~ 587 (607)
|+|++|++|+++ ..|++++..+
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHHHH
Confidence 999999999996 5788876543
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=2.4e-27 Score=255.74 Aligned_cols=184 Identities=31% Similarity=0.476 Sum_probs=143.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCccc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFN 450 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~ 450 (607)
.|+++|++++|+. .++|+|+||++.+|++|+|||++|||| ++|++|++.+.+
T Consensus 3 ~i~~~~ls~~~g~---~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYGD---RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeCC---ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 4899999999953 479999999999999999999999999 999999999996
Q ss_pred c-cHHHHhhcCCCCCCC--HHHHHHHHH------------------H-------cCchHHHHhCCccccccccCCCCCCC
Q 007337 451 C-SIEENIAYGCDGKAS--SADIENAAK------------------M-------ANAHDFISNFPEKYQTFVGERGVRLS 502 (607)
Q Consensus 451 g-TIreNI~~g~~~~~~--~~~i~~al~------------------~-------a~l~~~i~~lp~G~~T~ige~G~~LS 502 (607)
. |++|.+..+.. +.. ..+++++.. . +.+...+..| |+... ...-.+||
T Consensus 80 ~~tv~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~~-~~~~~~LS 155 (530)
T COG0488 80 EKTVLDYVIEGFG-ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPDE-DRPVSSLS 155 (530)
T ss_pred CccHHHHHHhhhH-HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCcc-cCchhhcC
Confidence 5 99999988743 111 011111110 0 1111222222 22211 22335699
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEe-Eec
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESG 580 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Iv-e~G 580 (607)
||||-|++|||||+.+||||||||||.+||.++-..+.+-|.+. ++ |+|+|||+-+++.. |++|+.++.|++. ..|
T Consensus 156 GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~G 233 (530)
T COG0488 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKG 233 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecC
Confidence 99999999999999999999999999999999999999999875 45 99999999999975 9999999999874 567
Q ss_pred ChhHHhhc
Q 007337 581 THEELLSK 588 (607)
Q Consensus 581 ~~~eL~~~ 588 (607)
+|+.-++.
T Consensus 234 ny~~~~~~ 241 (530)
T COG0488 234 NYSSYLEQ 241 (530)
T ss_pred CHHHHHHH
Confidence 88776553
No 353
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=2.9e-27 Score=284.41 Aligned_cols=168 Identities=22% Similarity=0.267 Sum_probs=140.4
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc---------------------------------------eEEEccCCCccc-c
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------------ISIVSQEPVLFN-C 451 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------------i~~V~Q~~~Lf~-g 451 (607)
.++|+|+|+++++||.++|+||||||| ++||+|++.+|+ -
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 458999999999999999999999999 799999988876 5
Q ss_pred cHHHHhhcCC----CC----CCCHHHH-----HHHHHHcCchHHHHhCCccccccccC-CCCCCChhHHHHHHHHHHHhc
Q 007337 452 SIEENIAYGC----DG----KASSADI-----ENAAKMANAHDFISNFPEKYQTFVGE-RGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 452 TIreNI~~g~----~~----~~~~~~i-----~~al~~a~l~~~i~~lp~G~~T~ige-~G~~LSGGQkQRialARAll~ 517 (607)
|++||+.|+. |. ..++++. .++++..++ .+-.||.+|+ ....||||||||++|||||+.
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL-------SHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc-------ccccCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 9999998852 10 1233332 224444444 3446888886 467899999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCch--hhhhcCEEEEEeCCEEeEecChhHHh
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLS--TVQSADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~--~l~~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
+|+|++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ ..+.+|+|++|++|+++..|+.+++.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999999998753 789999999974 44679999999999999999998873
No 354
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.95 E-value=3.7e-27 Score=218.64 Aligned_cols=148 Identities=39% Similarity=0.635 Sum_probs=112.3
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------eEEEccCCCcccccHHHHhhcCCCCCCCHHHH
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------ISIVSQEPVLFNCSIEENIAYGCDGKASSADI 470 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i 470 (607)
+++|++|+|+.. ++++++||+|++|+.++|+|++|||| .+..+ ...|+| .+... +..+...
T Consensus 1 ~~~~~~~~~~~~---~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~----~~~G~i----~~~~~-~~~~~~~ 68 (157)
T cd00267 1 EIENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK----PTSGEI----LIDGK-DIAKLPL 68 (157)
T ss_pred CeEEEEEEeCCe---eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC----CCccEE----EECCE-EcccCCH
Confidence 368999999743 69999999999999999999999999 23222 124443 22211 1111000
Q ss_pred HHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C
Q 007337 471 ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-G 549 (607)
Q Consensus 471 ~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~ 549 (607)
.+..+. +.-+|+ |||||+||++||||++.+|++++|||||++||.++...+.+.|.+..+ +
T Consensus 69 ~~~~~~------i~~~~q------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~ 130 (157)
T cd00267 69 EELRRR------IGYVPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEG 130 (157)
T ss_pred HHHHhc------eEEEee------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC
Confidence 011111 111122 999999999999999999999999999999999999999999988654 4
Q ss_pred CeEEEEccCchhhhh-cCEEEEEeCCE
Q 007337 550 RTVLVIAHRLSTVQS-ADTVAVVSDGE 575 (607)
Q Consensus 550 ~TvI~ItHrl~~l~~-aD~Iivl~~G~ 575 (607)
+|++++||+++.++. ||+|++|++|+
T Consensus 131 ~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 131 RTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 899999999999988 59999999975
No 355
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=4e-27 Score=242.28 Aligned_cols=170 Identities=29% Similarity=0.457 Sum_probs=142.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.+++++++..||. ..+++||||+|++||+-|+.|++|+||
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999983 468999999999999999999999999
Q ss_pred eEEEccCCCcc-cccHHHHhhcCCCCCC----CH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 ISIVSQEPVLF-NCSIEENIAYGCDGKA----SS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 i~~V~Q~~~Lf-~gTIreNI~~g~~~~~----~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
|+.|.|.+.|+ +-|+.|||.+|.+... +. +++.+.++.. |++-...+.-..||-||+||+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y-----------Gl~vdp~~~V~dLsVG~qQRV 149 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY-----------GLPVDPDAKVADLSVGEQQRV 149 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh-----------CCCCCccceeecCCcchhHHH
Confidence 99999999998 5799999999975211 22 2333333333 333334455567999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEe
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVES 579 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~ 579 (607)
.|-+|||++|++||||||||.|-|.--..+.+.++++. .++|+|+|||+|..++. ||+|-||.+||++..
T Consensus 150 EIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 150 EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 99999999999999999999999998888888888764 58999999999998765 999999999998654
No 356
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=2.9e-27 Score=205.25 Aligned_cols=161 Identities=29% Similarity=0.439 Sum_probs=131.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.+.++||+.+-++ ...|-|+|++|.+||++-+.|||||||
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQ 78 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhh
Confidence 3578999988764 368999999999999999999999999
Q ss_pred eEEEccCCCccc-ccHHHHhhcCCCCCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 439 ISIVSQEPVLFN-CSIEENIAYGCDGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 439 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
+++.+||+|||+ -++-+||.|.-|.+.. ......|++..+++.+..+.| ..||||||.|++|-|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL~R 147 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVALLR 147 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHHHH
Confidence 999999999995 6999999998663332 233556788888888877666 568999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHh--cCCCeEEEEccCchhhhhcCEEEE
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSL--MKGRTVLVIAHRLSTVQSADTVAV 570 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~--~~~~TvI~ItHrl~~l~~aD~Iiv 570 (607)
+|+..|+.++||||+|.||..-...+.+-.-.. ..+--+|.|||++..++.-.+|+-
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie 206 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIE 206 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeee
Confidence 999999999999999999998666665554221 137889999999998885444443
No 357
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.7e-27 Score=216.20 Aligned_cols=177 Identities=27% Similarity=0.509 Sum_probs=151.5
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++||+.+|.+ +.+++|+|++|++|+.++|+||+|+|| ++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 789999999974 479999999999999999999999999 77
Q ss_pred EEccCCCc-ccccHHHHhhcCCCCCCC--------HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 441 IVSQEPVL-FNCSIEENIAYGCDGKAS--------SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 441 ~V~Q~~~L-f~gTIreNI~~g~~~~~~--------~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
+.-|+..+ -.-||||=+.||+- +++ ...+.+|++-.+|.+. .+-|- ..||||||||--|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRf-PYSqGRlt~eD~~~I~~aieyl~L~~l----~dryL-------d~LSGGQrQRAfI 146 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRF-PYSQGRLTKEDRRIINEAIEYLHLEDL----SDRYL-------DELSGGQRQRAFI 146 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCC-cccCCCCchHHHHHHHHHHHHhcccch----HHHhH-------Hhcccchhhhhhh
Confidence 78888877 46799999999973 332 2347788887776543 22222 3599999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|-.+.+|.+-++||||..+||-.-...+++.++++.+ +||+++|-|+.++.. .+|+|+-|++|+++.+|+++|+++.
T Consensus 147 AMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 147 AMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred heeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 9999999999999999999999988888888887643 899999999999876 5999999999999999999999875
No 358
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=3.9e-27 Score=282.30 Aligned_cols=175 Identities=23% Similarity=0.402 Sum_probs=139.5
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCccc-ccHH
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLFN-CSIE 454 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf~-gTIr 454 (607)
..+|+|+|++|+|||.++|+||||||| ++||+|++.+|. -|++
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 458999999999999999999999999 799999987775 6999
Q ss_pred HHhhcCCC----C-------CCCH----------HHHHHHHHHc---C------chHHHH--hCCccccccccCC-CCCC
Q 007337 455 ENIAYGCD----G-------KASS----------ADIENAAKMA---N------AHDFIS--NFPEKYQTFVGER-GVRL 501 (607)
Q Consensus 455 eNI~~g~~----~-------~~~~----------~~i~~al~~a---~------l~~~i~--~lp~G~~T~ige~-G~~L 501 (607)
||+.|+.. . +.+. +++....+++ + .++.++ .|.+-.||.||+. -..|
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 99987410 0 0011 1111111111 0 112222 3445568999865 4689
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCc--hhhhhcCEEEEEeCCEEe
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRL--STVQSADTVAVVSDGEIV 577 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl--~~l~~aD~Iivl~~G~Iv 577 (607)
|||||||++||||++.+|++++|||||++||+.+...+.+.|+++. .++|+|+++|++ +....+|+|++|++|+++
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~iv 417 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIV 417 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEE
Confidence 9999999999999999999999999999999999999999999875 378999999997 456789999999999999
Q ss_pred EecChhHHh
Q 007337 578 ESGTHEELL 586 (607)
Q Consensus 578 e~G~~~eL~ 586 (607)
..|+.+++.
T Consensus 418 y~G~~~~~~ 426 (1470)
T PLN03140 418 YQGPRDHIL 426 (1470)
T ss_pred EeCCHHHHH
Confidence 999998886
No 359
>PRK13409 putative ATPase RIL; Provisional
Probab=99.94 E-value=1.3e-26 Score=256.57 Aligned_cols=156 Identities=28% Similarity=0.403 Sum_probs=130.2
Q ss_pred eEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------e------------------------
Q 007337 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------I------------------------ 439 (607)
Q Consensus 401 ~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i------------------------ 439 (607)
+++.+|.. ...+|++++ ++++||+++|+||||||| +
T Consensus 78 ~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~ 154 (590)
T PRK13409 78 EPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKK 154 (590)
T ss_pred CceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHH
Confidence 47899964 236899999 999999999999999999 2
Q ss_pred --------E----EEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 440 --------S----IVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 440 --------~----~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
+ |++|.|.+|.+|++||+... + ..+++.++++..++.+.. ++ .-.+|||||||
T Consensus 155 ~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~-~~~~~~~~l~~l~l~~~~-------~~----~~~~LSgGe~q 219 (590)
T PRK13409 155 LYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---D-ERGKLDEVVERLGLENIL-------DR----DISELSGGELQ 219 (590)
T ss_pred HhccCcceeecccchhhhhhhhcchHHHHHHhh---h-HHHHHHHHHHHcCCchhh-------cC----ChhhCCHHHHH
Confidence 2 34556778889999999753 1 235677888887775432 33 33569999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCC
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDG 574 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G 574 (607)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999987668999999999998865 8999999873
No 360
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.94 E-value=4.2e-26 Score=253.05 Aligned_cols=186 Identities=31% Similarity=0.502 Sum_probs=158.2
Q ss_pred CcEEEEeEEEECCCCC--CCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------
Q 007337 395 GEVELDDVWFAYPSRP--NHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~--~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------- 438 (607)
..++++|+++.-+..+ .+.+|+|||.+++|||..||.|||||||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 4689999998876542 4679999999999999999999999999
Q ss_pred --eEEEccCCCcc-cccHHHHhhcCC----CCCCC----HHHHHHHHHHcCchHHHHhCCccccccccC-CCCCCChhHH
Q 007337 439 --ISIVSQEPVLF-NCSIEENIAYGC----DGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGE-RGVRLSGGQK 506 (607)
Q Consensus 439 --i~~V~Q~~~Lf-~gTIreNI~~g~----~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige-~G~~LSGGQk 506 (607)
.|||+||..++ +-||+|++.|.. |.+.+ +++++++++.-+|.+ + -||.||. .++.+|||||
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~-~------~~t~ig~~~~rgiSGGEr 176 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEK-C------ADTLIGNPGIRGLSGGER 176 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChh-h------ccceecCCCCCccccchh
Confidence 89999999987 679999998742 22223 344666666666652 2 5788984 4478999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEeCCEEeEecChh
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSDGEIVESGTHE 583 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~--l~~aD~Iivl~~G~Ive~G~~~ 583 (607)
+|++||--++.||+||+||||||+||+.+...+.+.|+++. +|||||+.=|+++. ....|++++|.+|+++..|+.+
T Consensus 177 kRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~ 256 (613)
T KOG0061|consen 177 KRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPR 256 (613)
T ss_pred hHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHH
Confidence 99999999999999999999999999999999999999864 58999999999974 6789999999999999999998
Q ss_pred HHhh
Q 007337 584 ELLS 587 (607)
Q Consensus 584 eL~~ 587 (607)
++.+
T Consensus 257 ~~~~ 260 (613)
T KOG0061|consen 257 ELLE 260 (613)
T ss_pred HHHH
Confidence 8754
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.94 E-value=4.6e-25 Score=238.12 Aligned_cols=178 Identities=28% Similarity=0.417 Sum_probs=154.1
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCC-Cc
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEP-VL 448 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~-~L 448 (607)
.-++++|++++|++. +++++++||.|++|++||||||+|+|| +||.+|+- .+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l 397 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDEL 397 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhc
Confidence 458999999999753 579999999999999999999999999 99999987 33
Q ss_pred -ccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEecc
Q 007337 449 -FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 527 (607)
Q Consensus 449 -f~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~ 527 (607)
-+.|+-|++.-..| +..+.+++..|...++...-. . ..-..||||||-|+.||+.++.+|.+||||||
T Consensus 398 ~~~~t~~d~l~~~~~-~~~e~~~r~~L~~f~F~~~~~------~----~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEP 466 (530)
T COG0488 398 DPDKTVLEELSEGFP-DGDEQEVRAYLGRFGFTGEDQ------E----KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEP 466 (530)
T ss_pred CccCcHHHHHHhhCc-cccHHHHHHHHHHcCCChHHH------h----CchhhcCHhHHHHHHHHHHhccCCCEEEEcCC
Confidence 35589999987765 445788999999988865432 2 23456999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEe-cChhHHhhc
Q 007337 528 TSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVES-GTHEELLSK 588 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~-G~~~eL~~~ 588 (607)
|.+||.++-..+.++|.+. .-|+|+|||+..++.. |++|+++++ ++.+. |+|++-.+.
T Consensus 467 TNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 467 TNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9999999999999999886 5799999999999975 999999999 78776 888886554
No 362
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-25 Score=212.78 Aligned_cols=173 Identities=25% Similarity=0.418 Sum_probs=134.5
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
.-|+++||++.|.+ +++|+|||++|++||.-+|+|++||||
T Consensus 30 ~li~l~~v~v~r~g---k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRNG---KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEECC---EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 35999999999974 479999999999999999999999999
Q ss_pred -eEEEccC---CCcccccHHHHhhcC------CCC-CCCHHHHHH---HHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 -ISIVSQE---PVLFNCSIEENIAYG------CDG-KASSADIEN---AAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 -i~~V~Q~---~~Lf~gTIreNI~~g------~~~-~~~~~~i~~---al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
||+|+-+ -+.=+.+++|=+.=| ... +++++++.+ .++.+++.+. .+..=..||-|
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-----------a~r~~~~LS~G 175 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-----------ADRPFGSLSQG 175 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-----------ccCchhhcCHh
Confidence 6666432 222244555554322 111 455555443 4555555442 22333569999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---CCeEEEEccCchhh-hhcCEEEEEeCCEEeEec
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK---GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESG 580 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~---~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G 580 (607)
||||+-|||||.++|.+|||||||++||....+.+.+.|.++.. ..|+|+|||+.+.+ +..++++.+++|+++.+|
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 99999999999999999999999999999999999999988753 56899999999876 568999999999999887
Q ss_pred C
Q 007337 581 T 581 (607)
Q Consensus 581 ~ 581 (607)
.
T Consensus 256 ~ 256 (257)
T COG1119 256 K 256 (257)
T ss_pred c
Confidence 4
No 363
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=2.3e-26 Score=211.94 Aligned_cols=167 Identities=28% Similarity=0.447 Sum_probs=138.7
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCc---ccc
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVL---FNC 451 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~L---f~g 451 (607)
++++|+++||+|+.|++|-|+|.+|||| ++-|+|||-. -+-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 5679999999999999999999999999 6778999974 467
Q ss_pred cHHHHhhcCCCC----CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEecc
Q 007337 452 SIEENIAYGCDG----KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 527 (607)
Q Consensus 452 TIreNI~~g~~~----~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~ 527 (607)
||.||+.++... ..+... ..=+.....+.+..+|.|++-.++.+-.-|||||||-++|+-|.++.|+||+|||=
T Consensus 98 TieENl~la~~Rg~~rgl~~~l--n~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSAL--NERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchhh--hHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999987421 122110 11123334467889999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCch-hhhhcCEEEEEeCCEEeEe
Q 007337 528 TSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLS-TVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~-~l~~aD~Iivl~~G~Ive~ 579 (607)
|+||||.+...|++.=.+.- .+-|.++|||.++ .+..-+|.++|++|+||-.
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999888887754432 3679999999997 5678899999999999865
No 364
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.93 E-value=2.4e-25 Score=208.88 Aligned_cols=185 Identities=25% Similarity=0.447 Sum_probs=154.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------eEEEc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------ISIVS 443 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------i~~V~ 443 (607)
.+++++|+.+|.+ ..+++|+||++++|+..+++|++|+|| |||.|
T Consensus 2 ~L~ie~vtK~Fg~---k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLP 78 (300)
T COG4152 2 ALEIEGVTKSFGD---KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLP 78 (300)
T ss_pred ceEEecchhccCc---eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccCh
Confidence 4789999999974 469999999999999999999999999 99999
Q ss_pred cCCCcc-cccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCE
Q 007337 444 QEPVLF-NCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI 521 (607)
Q Consensus 444 Q~~~Lf-~gTIreNI~~g~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~I 521 (607)
-+--|+ .-|+.|-|.|... ..++.+++.+-+. .|++.+.-.. --..+-..||-|-.|+|.+--|++++|++
T Consensus 79 EERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~-----~wLer~~i~~--~~~~kIk~LSKGnqQKIQfisaviHePeL 151 (300)
T COG4152 79 EERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQ-----AWLERLEIVG--KKTKKIKELSKGNQQKIQFISAVIHEPEL 151 (300)
T ss_pred hhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHH-----HHHHhccccc--cccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence 999997 6799999988531 2355555544333 4566553211 11244567999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhcCC
Q 007337 522 LLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKGG 590 (607)
Q Consensus 522 llLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~g 590 (607)
+|||||+|+|||.+.+.+.+.+.++. ++.|+|+-|||++.++. ||+++.|++|+.|-+|+-++..+..|
T Consensus 152 lILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 152 LILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred EEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999998764 58999999999999865 99999999999999999998877543
No 365
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.92 E-value=5.1e-25 Score=197.50 Aligned_cols=177 Identities=27% Similarity=0.471 Sum_probs=144.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCC---------
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPV--------- 447 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~--------- 447 (607)
.+.+.|||++++|+++||+|.+|||| |-.++|||-
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 46789999999999999999999999 888999985
Q ss_pred --cccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 007337 448 --LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525 (607)
Q Consensus 448 --Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLD 525 (607)
+.++.++-|=.+- + +...+++.+.++.+||..+=..+ .-..||-|||||+||||||.-+|+|+|-|
T Consensus 107 GqiLd~PL~l~T~~~-~-~~R~~~i~~TL~~VGL~Pdhan~----------~~~~la~~QKQRVaLARALIL~P~iIIaD 174 (267)
T COG4167 107 GQILDFPLRLNTDLE-P-EQRRKQIFETLRMVGLLPDHANY----------YPHMLAPGQKQRVALARALILRPKIIIAD 174 (267)
T ss_pred hhHhcchhhhcccCC-h-HHHHHHHHHHHHHhccCcccccc----------chhhcCchhHHHHHHHHHHhcCCcEEEeh
Confidence 4445555554443 2 34456799999999986543221 23579999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhc--CCchHHHHHHhh
Q 007337 526 EATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK--GGVYTALVKRQL 600 (607)
Q Consensus 526 E~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~--~g~y~~l~~~~~ 600 (607)
||..+||..-..++.+...++- .+-.-|+|+.++..+++ +|+|+||++|+++|.|+..|+++. ...-++|+++.-
T Consensus 175 eAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKRLIESHF 254 (267)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHHHHHHHh
Confidence 9999999998888877765442 47789999999999986 999999999999999999999875 455677877654
Q ss_pred c
Q 007337 601 Q 601 (607)
Q Consensus 601 ~ 601 (607)
.
T Consensus 255 g 255 (267)
T COG4167 255 G 255 (267)
T ss_pred c
Confidence 3
No 366
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.92 E-value=1e-24 Score=197.99 Aligned_cols=179 Identities=26% Similarity=0.425 Sum_probs=150.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++||+.++++- .+|+|+||+|.+||.-+|+||+|+||
T Consensus 5 iL~~~~vsVsF~GF---~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGGF---KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcce---eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 47899999999754 58999999999999999999999999
Q ss_pred -eEEEccCCCcc-cccHHHHhhcCCCC-------------CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 -ISIVSQEPVLF-NCSIEENIAYGCDG-------------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 -i~~V~Q~~~Lf-~gTIreNI~~g~~~-------------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
|+-=+|.|..| +-|++||+.+.... ...++++.+++...+|.+.-. ....+||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~-----------~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERD-----------RLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhh-----------hhhhhhcc
Confidence 66779999999 56999999765311 112336777787777765432 23567999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecCh
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTH 582 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~ 582 (607)
||||++.|+--+.++|++|+||||++++-.+-....-+.|+.+.+.+++++|-|++.+++. ||+|-||..|.+...|+-
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999655555667788888889999999999999974 999999999999999999
Q ss_pred hHHhhc
Q 007337 583 EELLSK 588 (607)
Q Consensus 583 ~eL~~~ 588 (607)
+|+-++
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 998654
No 367
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=1.9e-24 Score=207.27 Aligned_cols=131 Identities=28% Similarity=0.376 Sum_probs=109.6
Q ss_pred ccceEEeeCCCEEEEEcCCCCcc------------------------------------------eEEEccCCCcccccH
Q 007337 416 KGITLKLLSGSKIALVGPSGGGK------------------------------------------ISIVSQEPVLFNCSI 453 (607)
Q Consensus 416 ~~isl~i~~Ge~vaiVG~sGsGK------------------------------------------i~~V~Q~~~Lf~gTI 453 (607)
+++++++++| .++|+||||||| ++||+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 5789999999 999999999999 78999999888
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh----cCCCEEEEeccCC
Q 007337 454 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM----MNPRILLLDEATS 529 (607)
Q Consensus 454 reNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll----~~~~IllLDE~TS 529 (607)
|+. ...+++.++++. ++-.+ .....||||||||++||||+. ++|++++|||||+
T Consensus 89 -----~~~---~~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~ 146 (197)
T cd03278 89 -----YSI---ISQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDA 146 (197)
T ss_pred -----eeE---EehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcc
Confidence 321 123456666655 11122 344679999999999999986 5779999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 530 ALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 530 aLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
+||+.+...+.+.|+++.++.|+|+|||+++.+..||+++.|..
T Consensus 147 ~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 147 ALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 99999999999999998778999999999999999999999864
No 368
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=4.3e-24 Score=190.03 Aligned_cols=192 Identities=26% Similarity=0.452 Sum_probs=147.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-++++++|..|.+. .-.+||||++-|||..+|||+|||||
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 47889999999754 46799999999999999999999999
Q ss_pred --------eEEEccCCCcccccHHHHhhcCCCCCCCH-------HHHHHHHHHcCchHHHHhCCccccccccCCCCCCCh
Q 007337 439 --------ISIVSQEPVLFNCSIEENIAYGCDGKASS-------ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSG 503 (607)
Q Consensus 439 --------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~-------~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSG 503 (607)
-++|.|+|- +-+|-.+.-|. +.-+ ..|-+ +++ ...+|++...- ..+.+.+....+||
T Consensus 83 RR~L~RTeWG~VhQnP~---DGLRm~VSAG~--NiGERlma~G~RHYG~-iR~-~a~~WL~~VEI-~~~RiDD~PrtFSG 154 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR---DGLRMQVSAGG--NIGERLMAIGARHYGN-IRA-EAQDWLEEVEI-DLDRIDDLPRTFSG 154 (258)
T ss_pred HHHHhhhccceeecCcc---ccceeeeccCC--ccchhHHhhhhhhhhh-HHH-HHHHHHHhccc-CcccccCcccccch
Confidence 788999984 11121111110 1111 00111 111 12345554432 34567788899999
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEec
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESG 580 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G 580 (607)
|.+||+.|||-|...|+++.+||||-+||..-++++.+.++.+-. +-.+++|||.+...+ -+|+.+||++|+++|.|
T Consensus 155 GMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~G 234 (258)
T COG4107 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234 (258)
T ss_pred HHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccc
Confidence 999999999999999999999999999999999999999988754 569999999999887 49999999999999999
Q ss_pred ChhHHhhc-CCchHHHHHH
Q 007337 581 THEELLSK-GGVYTALVKR 598 (607)
Q Consensus 581 ~~~eL~~~-~g~y~~l~~~ 598 (607)
-.+..+.. ...|-+|+-+
T Consensus 235 LTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 235 LTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred cccccccCCCCchHHHHHH
Confidence 88888764 5667776543
No 369
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=1.7e-23 Score=198.59 Aligned_cols=167 Identities=25% Similarity=0.410 Sum_probs=134.1
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcc-----------------------eEEEccC--CCcccccHHHHhhcC-----
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQE--PVLFNCSIEENIAYG----- 460 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~--~~Lf~gTIreNI~~g----- 460 (607)
..++|+||||++++||+++|||++|||| ++.+--- .+--+-|-||||.+-
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G 118 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILG 118 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhC
Confidence 3468999999999999999999999999 2221111 112246899999752
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHH
Q 007337 461 CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQ 540 (607)
Q Consensus 461 ~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~ 540 (607)
-..+..++.+.+.++-+.|.+|+.. | -.+.|-|.+-|||.|=|.-.+|+|||+||..|..|+.=.++=.
T Consensus 119 ~~~~ei~~~~~eIieFaELG~fi~~-P----------vktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~ 187 (249)
T COG1134 119 LTRKEIDEKVDEIIEFAELGDFIDQ-P----------VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL 187 (249)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhC-c----------hhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence 1112245667788888889888642 2 3578999999999999999999999999999999999555555
Q ss_pred HHHHHh-cCCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhc
Q 007337 541 DAMDSL-MKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 541 ~~l~~~-~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+.+.++ .+++|+|+|||.++.+++ ||++++|++|+|+..|+.+|.++.
T Consensus 188 ~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~~ 237 (249)
T COG1134 188 ERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIPA 237 (249)
T ss_pred HHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHHH
Confidence 666665 678999999999999875 999999999999999999998764
No 370
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=5.6e-24 Score=207.34 Aligned_cols=156 Identities=22% Similarity=0.280 Sum_probs=113.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEee-CCCEEEEEcCCCCcc------e-----------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLL-SGSKIALVGPSGGGK------I----------------------------- 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~-~Ge~vaiVG~sGsGK------i----------------------------- 439 (607)
.|+++|.. +|.+. ++++|+.. +|++++|+|+||||| |
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAE 77 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEE
Confidence 58999987 76432 46677654 589999999999999 2
Q ss_pred -EEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCcc-ccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 440 -SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEK-YQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 440 -~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G-~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
++++|++.. ...++.++ ..+.+++.+.. .++.| +++.+.....+||||||||++||||+..
T Consensus 78 v~~~f~~~~~----~~~~~r~~---gl~~~~~~~~~----------~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 78 VSFTFQLGGK----KYRVERSR---GLDYDQFTRIV----------LLPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEECCe----EEEEEEec---CCCHHHHHHhh----------hhhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 333333311 11111111 12333332221 12333 5666677888999999999999999974
Q ss_pred ----------CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEeCCE
Q 007337 518 ----------NPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVSDGE 575 (607)
Q Consensus 518 ----------~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~-aD~Iivl~~G~ 575 (607)
+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|-
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 6799999999999999999999999988765 7899999999998754 79999999884
No 371
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.9e-23 Score=192.67 Aligned_cols=180 Identities=29% Similarity=0.492 Sum_probs=149.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|++.+-.+. +++|+++||+|++||..||-||+||||
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 37899999987532 479999999999999999999999999
Q ss_pred --eEEEccCCCcccc-cHHHHhhcCCCC-----C---CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 --ISIVSQEPVLFNC-SIEENIAYGCDG-----K---ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 --i~~V~Q~~~Lf~g-TIreNI~~g~~~-----~---~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
|.+.+|.|.=++| |+.+=+..+... . ...+++.++++..++++... +-.|+ ..+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l------~R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFL------ERYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHh------hcccC---CCcCcchHH
Confidence 8889999998887 555555432110 0 12456888888888887332 22222 459999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhc--CEEEEEeCCEEeEecChhH
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSA--DTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~a--D~Iivl~~G~Ive~G~~~e 584 (607)
|..|+-+++-+|++.|||||-|+||-.+-+.|.+.+..+. +++++++|||.-..+... |++.||-+|+|+..|.. |
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998875 478999999999998876 99999999999999999 8
Q ss_pred Hhh
Q 007337 585 LLS 587 (607)
Q Consensus 585 L~~ 587 (607)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 775
No 372
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.90 E-value=1.1e-23 Score=240.78 Aligned_cols=104 Identities=35% Similarity=0.526 Sum_probs=93.7
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHHhcCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh
Q 007337 489 KYQT-FVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 489 G~~T-~ige~G~~LSGGQkQRialARAll~~~---~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~ 563 (607)
|++. .++.....||||||||++|||||+++| ++|||||||++||+++.+.+.+.|+++. +++|+|+|+|+++.++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4443 367788999999999999999999999 9999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEE------eCCEEeEecChhHHhhcCCch
Q 007337 564 SADTVAVV------SDGEIVESGTHEELLSKGGVY 592 (607)
Q Consensus 564 ~aD~Iivl------~~G~Ive~G~~~eL~~~~g~y 592 (607)
.||+|++| ++|+|++.|+++++.+....|
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccH
Confidence 99999999 799999999999998765443
No 373
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.90 E-value=6.3e-24 Score=192.27 Aligned_cols=100 Identities=46% Similarity=0.742 Sum_probs=91.4
Q ss_pred cccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCccccc-HHHHh
Q 007337 415 LKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLFNCS-IEENI 457 (607)
Q Consensus 415 L~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf~gT-IreNI 457 (607)
|+|+||+|++|++++|+|++|||| ++|++|++.+|++. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 689999999999999999999999 99999999999877 9999
Q ss_pred hcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCC
Q 007337 458 AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 529 (607)
Q Consensus 458 ~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TS 529 (607)
..+++++++++.+++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 -------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 -------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23567889999888765 46788888899999999999999999999999999999996
No 374
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=1.2e-22 Score=232.03 Aligned_cols=97 Identities=33% Similarity=0.533 Sum_probs=88.5
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHHhc---CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh
Q 007337 489 KYQT-FVGERGVRLSGGQKQRVAIARALMM---NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 489 G~~T-~ige~G~~LSGGQkQRialARAll~---~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~ 563 (607)
|++. .+++....|||||+||++|||+|.+ +|++|||||||++||+.+...+.+.|.++. +++|+|+|+|+++.++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 4443 3678889999999999999999997 599999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEE------eCCEEeEecChhHH
Q 007337 564 SADTVAVV------SDGEIVESGTHEEL 585 (607)
Q Consensus 564 ~aD~Iivl------~~G~Ive~G~~~eL 585 (607)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 375
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=193.79 Aligned_cols=178 Identities=21% Similarity=0.339 Sum_probs=130.2
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc--------------------eEEEccCCCcccccHHH--HhhcCCC-------C
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK--------------------ISIVSQEPVLFNCSIEE--NIAYGCD-------G 463 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------i~~V~Q~~~Lf~gTIre--NI~~g~~-------~ 463 (607)
++.+||||+||+|++++++|++|+|| -|++|++ -....-. |.-||.. +
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~---~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR---RREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch---hHHHHHHHHHHHhhhhheeeeech
Confidence 57899999999999999999999999 2333333 1111111 1112210 0
Q ss_pred CCCHHHHHHHHHHcCchH-------HHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHH
Q 007337 464 KASSADIENAAKMANAHD-------FISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE 536 (607)
Q Consensus 464 ~~~~~~i~~al~~a~l~~-------~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te 536 (607)
-.++-++.+++....-++ +.+-| +++..+-..-..||=|||-|..||-||+++|+||+|||||=.||-.+.
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq 192 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQ 192 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHH
Confidence 011122223322222222 22222 456666677789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhcCCchHHH
Q 007337 537 YLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 595 (607)
Q Consensus 537 ~~i~~~l~~~~--~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l 595 (607)
..|.+.+++.. .++||++.||.++-+ .-||+|++|++|+++..|+.++|.++-+.|+.+
T Consensus 193 ~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~ 254 (325)
T COG4586 193 ANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254 (325)
T ss_pred HHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEE
Confidence 99999997653 578999999999876 469999999999999999999998886666543
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=9.9e-23 Score=203.08 Aligned_cols=117 Identities=23% Similarity=0.220 Sum_probs=93.7
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCchHHH--HhCCccccc-------cccCCCCCCChhHHHHHHHHHHHh----cCCCE
Q 007337 455 ENIAYGCDGKASSADIENAAKMANAHDFI--SNFPEKYQT-------FVGERGVRLSGGQKQRVAIARALM----MNPRI 521 (607)
Q Consensus 455 eNI~~g~~~~~~~~~i~~al~~a~l~~~i--~~lp~G~~T-------~ige~G~~LSGGQkQRialARAll----~~~~I 521 (607)
+|+.+... ..+.++++.+++.+++.+.- ..+|+|..+ ...+.+..||||||||++||||++ ++|++
T Consensus 105 ~~~~l~~~-~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~i 183 (243)
T cd03272 105 DEYFLDKK-NVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPF 183 (243)
T ss_pred CEEEECCe-EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCE
Confidence 44444322 46888999999998876421 112344322 235678899999999999999996 46899
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 007337 522 LLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 522 llLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~ 572 (607)
+||||||++||+.+.+.+.+.|+++.+++|+|+++|+.+..+.||+|++|+
T Consensus 184 lllDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 184 YLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 999999999999999999999999877889999999999999999999985
No 377
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.88 E-value=3.8e-22 Score=237.12 Aligned_cols=101 Identities=31% Similarity=0.458 Sum_probs=91.7
Q ss_pred ccccc-ccCCCCCCChhHHHHHHHHHHHh---cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh
Q 007337 489 KYQTF-VGERGVRLSGGQKQRVAIARALM---MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 489 G~~T~-ige~G~~LSGGQkQRialARAll---~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~ 563 (607)
|++.. .++...+||||||||++|||||+ ++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|+|+++.++
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~ 876 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVK 876 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 56554 67888899999999999999998 5999999999999999999999999998874 4789999999999999
Q ss_pred hcCEEEEEe------CCEEeEecChhHHhhcC
Q 007337 564 SADTVAVVS------DGEIVESGTHEELLSKG 589 (607)
Q Consensus 564 ~aD~Iivl~------~G~Ive~G~~~eL~~~~ 589 (607)
.||+|++|+ +|++++.|+++++....
T Consensus 877 ~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~~ 908 (1809)
T PRK00635 877 VADYVLELGPEGGNLGGYLLASCSPEELIHLH 908 (1809)
T ss_pred hCCEEEEEccCCCCCCCEEEEeCCHHHHHhcc
Confidence 999999996 79999999999998643
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=5.8e-23 Score=199.27 Aligned_cols=164 Identities=20% Similarity=0.247 Sum_probs=122.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------eEEEccCCCcccc-c
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------ISIVSQEPVLFNC-S 452 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------i~~V~Q~~~Lf~g-T 452 (607)
.|+++|.- +|.. ..+++++++ +.++|+||+|||| +++++|+..+++. |
T Consensus 5 ~l~l~nfk-~~~~---~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 5 KLVLENFK-SYAG---EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEEECcc-cCCC---CeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCc
Confidence 47777765 6653 358898887 8999999999999 6677787766553 6
Q ss_pred HHHHhhcCCCCCCCHHHH-----HHHHHH----cCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc----CC
Q 007337 453 IEENIAYGCDGKASSADI-----ENAAKM----ANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM----NP 519 (607)
Q Consensus 453 IreNI~~g~~~~~~~~~i-----~~al~~----a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~----~~ 519 (607)
.++++.+... ....+.+ ...-.. .+-...+..||++.++.+ ..||+|||||++||||++. +|
T Consensus 76 ~~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~----~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 76 SCSVEVHFQE-IIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI----SNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred eEEEEEEEEe-CCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch----hhcCHHHHHHHHHHHHHHhcccCCC
Confidence 7777666532 1111100 000000 011123556788887765 4799999999999999963 58
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
++++|||||++||+.+...+.+.++++.++.|+|+|||+.+..+.||+|++|..
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999999999999999999999998778899999999998999999999954
No 379
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.2e-22 Score=182.42 Aligned_cols=160 Identities=25% Similarity=0.416 Sum_probs=127.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
++.+|++..-+ +..++.++||++.+||.+-|+||+|||| +.|
T Consensus 3 L~a~~L~~~R~---e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~y 79 (209)
T COG4133 3 LEAENLSCERG---ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLY 79 (209)
T ss_pred chhhhhhhccC---cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHH
Confidence 34566665543 4479999999999999999999999999 334
Q ss_pred EccCCCc-ccccHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC
Q 007337 442 VSQEPVL-FNCSIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 518 (607)
Q Consensus 442 V~Q~~~L-f~gTIreNI~~g~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~ 518 (607)
+...|-+ -.-|+.||+.|... ...+++.+++|++.++|.++ +++|-+ +||-||+.|+||||-.+..
T Consensus 80 LGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~~----------~LSAGQqRRvAlArL~ls~ 148 (209)
T COG4133 80 LGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPVG----------QLSAGQQRRVALARLWLSP 148 (209)
T ss_pred hhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccchh----------hcchhHHHHHHHHHHHcCC
Confidence 4444444 46799999999753 11357889999999999864 555543 4999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhhhhcCEEEEE
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQSADTVAVV 571 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~ItHrl~~l~~aD~Iivl 571 (607)
+|++||||||+|||.++...+...+... -++-.||..||+...++.+ ++.-+
T Consensus 149 ~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a-~~~~~ 201 (209)
T COG4133 149 APLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASA-QIRRL 201 (209)
T ss_pred CCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCcc-ceEEe
Confidence 9999999999999999999998888664 4578999999998777554 33333
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.87 E-value=6.6e-22 Score=190.97 Aligned_cols=129 Identities=26% Similarity=0.344 Sum_probs=106.2
Q ss_pred eEEeeCCCEEEEEcCCCCcc-------------------------------------eEEEccCC-----Cccc-ccHHH
Q 007337 419 TLKLLSGSKIALVGPSGGGK-------------------------------------ISIVSQEP-----VLFN-CSIEE 455 (607)
Q Consensus 419 sl~i~~Ge~vaiVG~sGsGK-------------------------------------i~~V~Q~~-----~Lf~-gTIre 455 (607)
++++.+| +++|+||||||| +++++|++ .++. -|+.|
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~ 95 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILE 95 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhh
Confidence 4566677 999999999999 77888887 3332 28888
Q ss_pred HhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH------HHHHHHHhcCCCEEEEeccCC
Q 007337 456 NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR------VAIARALMMNPRILLLDEATS 529 (607)
Q Consensus 456 NI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR------ialARAll~~~~IllLDE~TS 529 (607)
|+.+.. ++++.+.+ .+....||+||+|| ++||||+..+|++++|||||+
T Consensus 96 ~~~~~~-----~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~ 150 (204)
T cd03240 96 NVIFCH-----QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTT 150 (204)
T ss_pred ceeeec-----hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCcc
Confidence 887651 23333222 45567899999996 799999999999999999999
Q ss_pred CCCHHHHH-HHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeC
Q 007337 530 ALDAESEY-LVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 530 aLD~~te~-~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
+||+.+.. .+.+.|.++.+ ++|+|+|||+++.+..||+|++|++
T Consensus 151 ~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 151 NLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred ccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999988 99999988765 6899999999999999999999965
No 381
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=2.2e-22 Score=178.67 Aligned_cols=168 Identities=29% Similarity=0.392 Sum_probs=123.0
Q ss_pred cEEEEeEEEECCC----CCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------
Q 007337 396 EVELDDVWFAYPS----RPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~----~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------- 438 (607)
.+..+|++.++.- +-.-|+++|+||+++.||+|.+-|||||||
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 3677777655421 112479999999999999999999999999
Q ss_pred -----------eEEEccCCCcccc-----cHHHHh-hcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 -----------ISIVSQEPVLFNC-----SIEENI-AYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 -----------i~~V~Q~~~Lf~g-----TIreNI-~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
||||+|---..+. -+.|-+ ..|-+.+.-.++....+...++-+.+=+|| ...+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~La----------PaTF 153 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLA----------PATF 153 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCC----------Cccc
Confidence 8899885332221 122222 223221111223344455555555555554 4689
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhhh-hcCEEEEEeC
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTVQ-SADTVAVVSD 573 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~ItHrl~~l~-~aD~Iivl~~ 573 (607)
|||++||+.|||.+.-|-|||+|||||++||+.+.+.+.+.|.+. .++...|=|-|+-+.-+ -|||++-|..
T Consensus 154 SGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred CCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999999865 36888999999987654 4899987753
No 382
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.87 E-value=8.5e-22 Score=197.06 Aligned_cols=148 Identities=20% Similarity=0.232 Sum_probs=114.0
Q ss_pred CCEEEEEcCCCCcc----------------------------------------eEEEccCCCc----------ccccHH
Q 007337 425 GSKIALVGPSGGGK----------------------------------------ISIVSQEPVL----------FNCSIE 454 (607)
Q Consensus 425 Ge~vaiVG~sGsGK----------------------------------------i~~V~Q~~~L----------f~gTIr 454 (607)
...++||||||||| +++++|++.. -.-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 67999999999999 6788888521 145778
Q ss_pred HHhhcCCC-------CCCCHHHHHHHHHHcCchHH--HHhCCccc-------cccccCCCCCCChhHHHHHHHHHHHh--
Q 007337 455 ENIAYGCD-------GKASSADIENAAKMANAHDF--ISNFPEKY-------QTFVGERGVRLSGGQKQRVAIARALM-- 516 (607)
Q Consensus 455 eNI~~g~~-------~~~~~~~i~~al~~a~l~~~--i~~lp~G~-------~T~ige~G~~LSGGQkQRialARAll-- 516 (607)
+||.++.. .....+++.++++.+++.-+ -.-+|+|- ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~ 184 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALL 184 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHh
Confidence 77765421 12345778888998887510 00011110 01233456789999999999999997
Q ss_pred --cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 007337 517 --MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 517 --~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~ 572 (607)
++|+++||||||++||+.+...+.+.|+++.++.|+|+|||+.+.++.||+|+-+.
T Consensus 185 ~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 185 LFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999999878889999999999999999999875
No 383
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.85 E-value=1.2e-21 Score=202.73 Aligned_cols=173 Identities=25% Similarity=0.400 Sum_probs=144.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEcc---CCC
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQ---EPV 447 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q---~~~ 447 (607)
-|.++||+|.|+++ ..+++++||-|.++++||+|||+|+|| +++-.| +..
T Consensus 389 vi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~l 466 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQL 466 (614)
T ss_pred eEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhc
Confidence 58999999999865 379999999999999999999999998 333333 334
Q ss_pred cccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEecc
Q 007337 448 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 527 (607)
Q Consensus 448 Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~ 527 (607)
-++-|.-||+.---+..-..+++...+..+||..+....|. .+||+|||.||..||.+++.|.|||||||
T Consensus 467 dl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~l~~kqP~lLlLDEP 536 (614)
T KOG0927|consen 467 DLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFARLAVKQPHLLLLDEP 536 (614)
T ss_pred CcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHHHHhcCCcEEEecCC
Confidence 56777778876533323566789999999999877665552 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeE-ecCh
Q 007337 528 TSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVE-SGTH 582 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive-~G~~ 582 (607)
|++||-++-....++|.+. .-++|+|||....+.+ |++|.+.+||++.. .|.+
T Consensus 537 tnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 537 TNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred CcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 9999999999999999886 6799999999999875 99999999998854 4544
No 384
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=2.6e-21 Score=192.89 Aligned_cols=110 Identities=20% Similarity=0.170 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHcCchHHHHh--CCccccccccCCC---------CCCChhHHHHHHHHHHHhc----CCCEEEEeccC
Q 007337 464 KASSADIENAAKMANAHDFISN--FPEKYQTFVGERG---------VRLSGGQKQRVAIARALMM----NPRILLLDEAT 528 (607)
Q Consensus 464 ~~~~~~i~~al~~a~l~~~i~~--lp~G~~T~ige~G---------~~LSGGQkQRialARAll~----~~~IllLDE~T 528 (607)
..+.+++.+.++.++++.+... +|+|.-+.+.+.. .+||||||||++||||++. +|+++||||||
T Consensus 108 ~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt 187 (247)
T cd03275 108 VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVD 187 (247)
T ss_pred EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEeccc
Confidence 4678889999999998644222 4566666665543 7899999999999999986 48999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEEEEEeC
Q 007337 529 SALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 529 SaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
++||+.+...+.+.|.++.+ +.|+|+|||+.+.++.||+|++|..
T Consensus 188 ~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 188 AALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred ccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 99999999999999998765 7899999999999999999999964
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.83 E-value=2.6e-20 Score=192.93 Aligned_cols=189 Identities=22% Similarity=0.400 Sum_probs=129.3
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------eEEEccCCCcccccHHH
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------ISIVSQEPVLFNCSIEE 455 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------i~~V~Q~~~Lf~gTIre 455 (607)
..|.++|++++|.+ .++++|..|++.+|++++|+|++|||| +...+++..-=..+.-+
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 46999999999974 468999999999999999999999999 22222221110111111
Q ss_pred HhhcCCCC-----CCCHHHHHHHHHHcCchHH------HHh--------------CCccccccc-cCCCCCCChhHHHHH
Q 007337 456 NIAYGCDG-----KASSADIENAAKMANAHDF------ISN--------------FPEKYQTFV-GERGVRLSGGQKQRV 509 (607)
Q Consensus 456 NI~~g~~~-----~~~~~~i~~al~~a~l~~~------i~~--------------lp~G~~T~i-ge~G~~LSGGQkQRi 509 (607)
-+.+.... ++-.|++..+++....+++ ... -..|+.... ...-.+||||||-|+
T Consensus 151 ~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~ 230 (614)
T KOG0927|consen 151 AVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRA 230 (614)
T ss_pred HHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHH
Confidence 11100000 0000111122111111100 000 011322222 234578999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCC-eEEEEccCchhhhh-cCEEEEEeCCE-EeEecChhHHh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR-TVLVIAHRLSTVQS-ADTVAVVSDGE-IVESGTHEELL 586 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~-TvI~ItHrl~~l~~-aD~Iivl~~G~-Ive~G~~~eL~ 586 (607)
+|||||+.+|++|+|||||.+||.++-.-+.+.|.+. ++ |.++++|.-.++.. |-.|+.|++++ +...|+|++..
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 9999999999999999999999999999999999886 45 99999999999975 99999999999 77889999887
Q ss_pred hc
Q 007337 587 SK 588 (607)
Q Consensus 587 ~~ 588 (607)
..
T Consensus 309 ~t 310 (614)
T KOG0927|consen 309 KT 310 (614)
T ss_pred hH
Confidence 64
No 386
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.83 E-value=2.2e-18 Score=199.84 Aligned_cols=185 Identities=22% Similarity=0.378 Sum_probs=156.6
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..+..+|++..|+... . +.+++|+.|++||+.++-|++||||
T Consensus 563 ~~~~~~~L~k~y~~~~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 3588999999998652 2 8999999999999999999999999
Q ss_pred -eEEEccCCCcc-cccHHHHhhcCC-CCCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 -ISIVSQEPVLF-NCSIEENIAYGC-DGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 -i~~V~Q~~~Lf-~gTIreNI~~g~-~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
+||+||+..|+ .-|.||.+.+.. -.... ++.+...++..++.+... ++ -.++|||+|.||++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-------~~----~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-------KQ----VRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-------cc----hhhCCCcchhhHHH
Confidence 89999998887 679999997642 11112 233677777777776543 22 46899999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCC-eEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhcC
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR-TVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~-TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
|-|++.+|++++|||||+++||.+++.+.+.|.++.++. -+|+.||..+..+. |||+..|-+|++...|+.++|-.+-
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsrf 789 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSRY 789 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhhc
Confidence 999999999999999999999999999999999987644 99999999999875 9999999999999999999997664
Q ss_pred Cch
Q 007337 590 GVY 592 (607)
Q Consensus 590 g~y 592 (607)
|.+
T Consensus 790 G~g 792 (885)
T KOG0059|consen 790 GSG 792 (885)
T ss_pred CCc
Confidence 443
No 387
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.82 E-value=5.1e-20 Score=194.09 Aligned_cols=178 Identities=25% Similarity=0.400 Sum_probs=136.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.++++|++.. ..++|+||++++||+++|.|-.|||+
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4677876532 14789999999999999999999999
Q ss_pred eEEEccC----CCcccccHHHHhhcCCCCCCCHH-HHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 439 ISIVSQE----PVLFNCSIEENIAYGCDGKASSA-DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 439 i~~V~Q~----~~Lf~gTIreNI~~g~~~~~~~~-~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
|+|||-| -.+..-||++||++..-...... -+...-+..-..+++..|.-.-..+ ...-.+||||-.|++.|||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~-~~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSP-EQPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCc-cchhhcCCchhhhhHHHHH
Confidence 9999865 44678999999988621111101 2333334444445666553221111 1334579999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecC
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 581 (607)
.|..+|+||||||||-++|--+.+.|.+.|+++. +++++|+||-.+..+ ..||||+||.+|+|+..=+
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999875 579999999999866 4899999999999987433
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=8.2e-20 Score=175.42 Aligned_cols=81 Identities=21% Similarity=0.253 Sum_probs=72.2
Q ss_pred cCCCCCCChhHHHHHHHHHHH----hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC----CCeEEEEccCchhhhhcC
Q 007337 495 GERGVRLSGGQKQRVAIARAL----MMNPRILLLDEATSALDAESEYLVQDAMDSLMK----GRTVLVIAHRLSTVQSAD 566 (607)
Q Consensus 495 ge~G~~LSGGQkQRialARAl----l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~----~~TvI~ItHrl~~l~~aD 566 (607)
.+...+||||||||++||||+ +.+|+++||||||++||+.+...+.+.|++... ++|+|++||+++.+.++|
T Consensus 104 ~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d 183 (198)
T cd03276 104 VRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSD 183 (198)
T ss_pred CCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCccccccccc
Confidence 345668999999999999999 689999999999999999999999999988643 358999999999999999
Q ss_pred EEEEEeCCE
Q 007337 567 TVAVVSDGE 575 (607)
Q Consensus 567 ~Iivl~~G~ 575 (607)
+|-+|..++
T Consensus 184 ~v~~~~~~~ 192 (198)
T cd03276 184 DVKVFRMKD 192 (198)
T ss_pred ceeEEEecC
Confidence 999998754
No 389
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.82 E-value=8.7e-20 Score=171.96 Aligned_cols=86 Identities=24% Similarity=0.245 Sum_probs=79.7
Q ss_pred HHHhCCccccccccCCCCCCChhHHHHHHHHHHHh----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEc
Q 007337 482 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIA 556 (607)
Q Consensus 482 ~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll----~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~It 556 (607)
.+..+|+|..|++ ||||||||++||||+. .+|+++++||||++||+.+...+.+.|.++.+ ++|+|+||
T Consensus 82 ~~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiS 155 (178)
T cd03239 82 SYFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVIT 155 (178)
T ss_pred ceEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 3678999999999 9999999999999984 79999999999999999999999999988754 48999999
Q ss_pred cCchhhhhcCEEEEEeC
Q 007337 557 HRLSTVQSADTVAVVSD 573 (607)
Q Consensus 557 Hrl~~l~~aD~Iivl~~ 573 (607)
|+++.+..+|+++++++
T Consensus 156 H~~~~~~~adrvi~i~~ 172 (178)
T cd03239 156 LKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHhhCCeEEEEEE
Confidence 99999999999999986
No 390
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.81 E-value=4.3e-20 Score=209.40 Aligned_cols=167 Identities=28% Similarity=0.443 Sum_probs=143.2
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEEEccC-CCcccccHH
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISIVSQE-PVLFNCSIE 454 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~V~Q~-~~Lf~gTIr 454 (607)
...+|+|||=-++||..+|+.|+||||| +|||.|+ .++=.-|||
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVr 882 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVR 882 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchH
Confidence 4579999999999999999999999999 8999885 567789999
Q ss_pred HHhhcCC----CCCCCHHH----HHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC-CEEEEe
Q 007337 455 ENIAYGC----DGKASSAD----IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP-RILLLD 525 (607)
Q Consensus 455 eNI~~g~----~~~~~~~~----i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~-~IllLD 525 (607)
|-+.|.. |.+.+++| ++++++..++.+.= |..||.-|..||..||.|+.||=-|..|| .|+.||
T Consensus 883 ESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD 955 (1391)
T KOG0065|consen 883 ESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD 955 (1391)
T ss_pred HHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec
Confidence 9998752 33444333 67788877776653 55699999999999999999999999999 899999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--hhhcCEEEEEeC-CEEeEecChhH
Q 007337 526 EATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--VQSADTVAVVSD-GEIVESGTHEE 584 (607)
Q Consensus 526 E~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~--l~~aD~Iivl~~-G~Ive~G~~~e 584 (607)
||||+||+++...|.+.++++. .|+|++..=|+++. .+..|+++.|++ |+.|-.|+-.+
T Consensus 956 EPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999874 69999999999984 689999999975 79998887433
No 391
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=6.5e-20 Score=188.99 Aligned_cols=180 Identities=24% Similarity=0.321 Sum_probs=138.7
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------eEEEccCC----------Cccc
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------ISIVSQEP----------VLFN 450 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------i~~V~Q~~----------~Lf~ 450 (607)
..+|..+|.+.+|.. +.+|++-+|++..|.++++||++|+|| +-=|+|+. .+-.
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~ 154 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLES 154 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhc
Confidence 356899999999974 469999999999999999999999999 22234433 2334
Q ss_pred ccHHHHhhcCCC---CCCCHHHHHH-HHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEec
Q 007337 451 CSIEENIAYGCD---GKASSADIEN-AAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 526 (607)
Q Consensus 451 gTIreNI~~g~~---~~~~~~~i~~-al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE 526 (607)
+|-|.-+..-.+ ...+.+++.. +++-.+..+.....|- ..||||=|=|++||||++++||||||||
T Consensus 155 D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLARAlf~~pDlLLLDE 224 (582)
T KOG0062|consen 155 DTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALARALFAKPDLLLLDE 224 (582)
T ss_pred cHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHHHHhcCCCEEeecC
Confidence 444444433221 0113456555 7888888888777763 4699999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEE-eEecChhHHhhc
Q 007337 527 ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEI-VESGTHEELLSK 588 (607)
Q Consensus 527 ~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~I-ve~G~~~eL~~~ 588 (607)
||..||..+-..+.+.|... ..|+|+|+|.-+++.. |--|+.+++=|+ ...|++++..+.
T Consensus 225 PTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 225 PTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred CcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 99999999999999999886 4899999999999965 777888887665 345777666543
No 392
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.77 E-value=2.8e-19 Score=176.39 Aligned_cols=109 Identities=25% Similarity=0.350 Sum_probs=96.6
Q ss_pred hHHHHhCCccccccccCCCCCCChhH--------HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHH--HHHHHHHHhcCC
Q 007337 480 HDFISNFPEKYQTFVGERGVRLSGGQ--------KQRVAIARALMMNPRILLLDEATSALDAESEY--LVQDAMDSLMKG 549 (607)
Q Consensus 480 ~~~i~~lp~G~~T~ige~G~~LSGGQ--------kQRialARAll~~~~IllLDE~TSaLD~~te~--~i~~~l~~~~~~ 549 (607)
-|.+..+|+++++.+++.|.++|||| +||+++||+++++++|.+| ||+++|+.+|. .+.+.++. .+
T Consensus 109 iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~--~~ 184 (249)
T cd01128 109 LDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKG--TG 184 (249)
T ss_pred EECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhc--CC
Confidence 36788999999999999999999999 9999999999999999999 99999987665 34444443 57
Q ss_pred CeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHH
Q 007337 550 RTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVK 597 (607)
Q Consensus 550 ~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~ 597 (607)
+|.|+++||+.+..++|.|.||+.|++ |++|+..++.|+.++.
T Consensus 185 ~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~~~ 227 (249)
T cd01128 185 NMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRMWL 227 (249)
T ss_pred CcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHHHH
Confidence 999999999999999999999999997 8899988888887765
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.6e-18 Score=177.32 Aligned_cols=186 Identities=27% Similarity=0.358 Sum_probs=146.3
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCcc
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLF 449 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf 449 (607)
..+++.+|+|.|++.+ .+.+.+++++++.-+++++||++|+|| |+|-.|.-.=|
T Consensus 361 p~l~i~~V~f~y~p~~-y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhvd~ 439 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSE-YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHVDF 439 (582)
T ss_pred CeeEEEeeeccCCCcc-hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhhhH
Confidence 4699999999998763 279999999999999999999999999 77877754322
Q ss_pred -cccHHH--HhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEec
Q 007337 450 -NCSIEE--NIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 526 (607)
Q Consensus 450 -~gTIre--NI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE 526 (607)
+-.+.. -..=-.| .-++++|++.|...|+...+..-| -..||||||-|+++|-+.+.+|.+|||||
T Consensus 440 l~~~v~~vd~~~~~~p-G~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 440 LDKNVNAVDFMEKSFP-GKTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred HHHHhHHHHHHHHhCC-CCCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 222111 1100112 337899999999887776654322 14599999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEeE-ecChhHHhhcCCchHHHHHHhhc
Q 007337 527 ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVE-SGTHEELLSKGGVYTALVKRQLQ 601 (607)
Q Consensus 527 ~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive-~G~~~eL~~~~g~y~~l~~~~~~ 601 (607)
||.+||-++-..+-++|+.. +--||+|||..+++.. |+.+++.++|+|.. .|+.+ .|+++...+.+
T Consensus 509 PTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~-------~yKkl~~~e~~ 576 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGID-------KYKKLLGAELR 576 (582)
T ss_pred CCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHH-------HHHHHHHHHHh
Confidence 99999999999999999886 5679999999999975 99999999999965 23222 37777766654
No 394
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=4.7e-18 Score=183.80 Aligned_cols=101 Identities=37% Similarity=0.564 Sum_probs=91.5
Q ss_pred cccCCCCCCChhHHHHHHHHHHHhcCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEE
Q 007337 493 FVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTV 568 (607)
Q Consensus 493 ~ige~G~~LSGGQkQRialARAll~~~---~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~I 568 (607)
.+|+--..|||||.|||-||.-|.+++ -+|||||||.+|-.+--+++++.|.++. ++.|||+|-|.|+.++.||.|
T Consensus 815 ~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~I 894 (935)
T COG0178 815 KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWI 894 (935)
T ss_pred ecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEE
Confidence 479999999999999999999999987 9999999999999988888888887764 589999999999999999999
Q ss_pred EEE------eCCEEeEecChhHHhhcCCchH
Q 007337 569 AVV------SDGEIVESGTHEELLSKGGVYT 593 (607)
Q Consensus 569 ivl------~~G~Ive~G~~~eL~~~~g~y~ 593 (607)
+-| +.|+|+.+||++|+.+..+.|-
T Consensus 895 IDLGPeGG~~GG~iva~GTPeeva~~~~S~T 925 (935)
T COG0178 895 IDLGPEGGDGGGEIVASGTPEEVAKVKASYT 925 (935)
T ss_pred EEcCCCCCCCCceEEEecCHHHHHhCccchh
Confidence 999 4689999999999998766654
No 395
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.75 E-value=2.1e-19 Score=160.46 Aligned_cols=174 Identities=27% Similarity=0.431 Sum_probs=139.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~~ 441 (607)
+.++||+.+ .-|-.+|..+..||.+=+|||+|||| =+|
T Consensus 4 ~qln~v~~~-------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 4 MQLNDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeecccccc-------ccccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHH
Confidence 566776543 13567899999999999999999999 345
Q ss_pred Ecc-CCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc---
Q 007337 442 VSQ-EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM--- 517 (607)
Q Consensus 442 V~Q-~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~--- 517 (607)
.+| +...|.-.+..-+++..|...-.+++.+++.+.+++|- ++..-..|||||+||+-||-.+++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DK-----------L~Rs~~qLSGGEWQRVRLAav~LQv~P 145 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQITP 145 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccch-----------hhhhhhhcCcccceeeEEeEEEEEecC
Confidence 554 56789999999999987632223446666666555543 455567899999999999998885
Q ss_pred --C--CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCch-hhhhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 518 --N--PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS-TVQSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 518 --~--~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~-~l~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
| .++|++|||-+.||...+..+...|.+++ .+.|+|+-.|+++ |+++||+++.+..|++..+|..+|.+..
T Consensus 146 d~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 146 DANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 2 37899999999999998888887777765 5899999999996 8999999999999999999999998764
No 396
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.74 E-value=1.6e-17 Score=198.11 Aligned_cols=106 Identities=25% Similarity=0.389 Sum_probs=93.2
Q ss_pred HHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC---CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccC
Q 007337 483 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN---PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR 558 (607)
Q Consensus 483 i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~---~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHr 558 (607)
+..+--||-+ +|+.-..|||||.|||-||..|.++ +.+|||||||.+|+++.-+.+.+.+.++. .+.|+|+|.|+
T Consensus 1683 L~~vGLgYl~-LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~ 1761 (1809)
T PRK00635 1683 LIDNGLGYLP-LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHD 1761 (1809)
T ss_pred HHHcCCCeee-CCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3334446654 7999999999999999999999976 78999999999999998888889988763 58999999999
Q ss_pred chhhhhcCEEEEE------eCCEEeEecChhHHhhcC
Q 007337 559 LSTVQSADTVAVV------SDGEIVESGTHEELLSKG 589 (607)
Q Consensus 559 l~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~~ 589 (607)
+..++.||.|+-| +.|+|+.+||++|+.+..
T Consensus 1762 ~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1762 PALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred HHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 9999999999999 468999999999998764
No 397
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.73 E-value=2.5e-17 Score=159.89 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH----hcCCCEEEEeccCCCCCHHHHHHHHH
Q 007337 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL----MMNPRILLLDEATSALDAESEYLVQD 541 (607)
Q Consensus 466 ~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl----l~~~~IllLDE~TSaLD~~te~~i~~ 541 (607)
+.+++.+++..... |.+..+|.+.+.. ..+...||||||||+.+|+++ +.+|+++|+||||++||+.+.+.+.+
T Consensus 94 ~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~ 171 (213)
T cd03277 94 PQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFD 171 (213)
T ss_pred chHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHH
Confidence 34556666666544 6667777776543 456779999999998877554 58999999999999999999999999
Q ss_pred HHHHhcCC---CeEEEEccCchh-hhhcC--EEEEEeCCE
Q 007337 542 AMDSLMKG---RTVLVIAHRLST-VQSAD--TVAVVSDGE 575 (607)
Q Consensus 542 ~l~~~~~~---~TvI~ItHrl~~-l~~aD--~Iivl~~G~ 575 (607)
.|.+..+. .|+|+|||++.. +..|| +|++|++|+
T Consensus 172 ~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 172 MLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99887543 479999999854 44455 788888875
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=1.5e-17 Score=152.80 Aligned_cols=190 Identities=27% Similarity=0.365 Sum_probs=143.0
Q ss_pred EEEeEEEECCCC-CCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------------
Q 007337 398 ELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------------- 438 (607)
Q Consensus 398 ~~~~vsf~y~~~-~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------------- 438 (607)
.++|++..+... ....+.+++|++...||..++||+|||||
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 344544443322 13457899999999999999999999999
Q ss_pred ------eEEEccCCCcccc---c----HHHHhhcCCCC-------CCCHHHHHHHHHHcCchH--HHHhCCccccccccC
Q 007337 439 ------ISIVSQEPVLFNC---S----IEENIAYGCDG-------KASSADIENAAKMANAHD--FISNFPEKYQTFVGE 496 (607)
Q Consensus 439 ------i~~V~Q~~~Lf~g---T----IreNI~~g~~~-------~~~~~~i~~al~~a~l~~--~i~~lp~G~~T~ige 496 (607)
|+.++|+|.-.-+ + +-+||-.+.-+ .-...+-.+.++.+|+.| +|++ .|-.+
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP~E--- 158 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYPYE--- 158 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCcch---
Confidence 8899999975422 2 45666443210 112345567888999865 3432 33333
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh-hhcCEEEEEeC
Q 007337 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV-QSADTVAVVSD 573 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l-~~aD~Iivl~~ 573 (607)
|--|+-|++.||-|+..+|++||-||||.++|+.|..+|...|.++- .+-|+++++|++.++ +.||+|-||--
T Consensus 159 ----lTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 159 ----LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred ----hccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 44577899999999999999999999999999999999999987654 367899999999987 46999999999
Q ss_pred CEEeEecChhHHhhc-CCch-HHHHH
Q 007337 574 GEIVESGTHEELLSK-GGVY-TALVK 597 (607)
Q Consensus 574 G~Ive~G~~~eL~~~-~g~y-~~l~~ 597 (607)
|+-+|.+.-++|++. .-.| +.|.+
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqALi~ 260 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQALIR 260 (330)
T ss_pred cccccccchhHHhcCCCCchHHHHHH
Confidence 999999999999985 3344 44443
No 399
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.6e-17 Score=164.78 Aligned_cols=173 Identities=29% Similarity=0.382 Sum_probs=119.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCC---
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPV--- 447 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~--- 447 (607)
-+-++||+|.||+. .|.+++++|-|.--.+||||||+|.|| |++-.|..-
T Consensus 586 vLGlH~VtFgy~gq--kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L 663 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ--KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEAL 663 (807)
T ss_pred eeecccccccCCCC--CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhh
Confidence 46789999999865 579999999999999999999999999 555444321
Q ss_pred cccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEecc
Q 007337 448 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 527 (607)
Q Consensus 448 Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~ 527 (607)
=-..|--|-+.-+ .+.+-++-+.++-..||... -+|. .-..||||||.|+++|--.++.|||||||||
T Consensus 664 ~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~~PDvlILDEP 731 (807)
T KOG0066|consen 664 NGEETPVEYLQRK--FNLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALGGPDVLILDEP 731 (807)
T ss_pred ccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence 0111222222111 01122222333333232211 1111 2357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcC-EEEEEeCCEEeE-ecChhH
Q 007337 528 TSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSAD-TVAVVSDGEIVE-SGTHEE 584 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD-~Iivl~~G~Ive-~G~~~e 584 (607)
|.+||-++-..+-++|.+. +-.||+|||.-..+...| ..+|+++-.|-| .|.+++
T Consensus 732 TNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 732 TNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred CCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 9999999999999999986 568999999988876543 456666654433 355544
No 400
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=4.2e-17 Score=165.24 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 007337 500 RLSGGQKQRVAIARALMM----NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 575 (607)
Q Consensus 500 ~LSGGQkQRialARAll~----~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~ 575 (607)
.|||||+||++|||+++. +|++++|||||++||+.+...+.+.+.++.+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997653 9999999999999999999999999999878899999999999999999999999874
No 401
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.72 E-value=4.4e-17 Score=165.71 Aligned_cols=160 Identities=28% Similarity=0.419 Sum_probs=122.0
Q ss_pred eEEEECCCCCCCcccccceEEe-----eCCCEEEEEcCCCCcc----------------------eEEEccCC-Cccccc
Q 007337 401 DVWFAYPSRPNHMVLKGITLKL-----LSGSKIALVGPSGGGK----------------------ISIVSQEP-VLFNCS 452 (607)
Q Consensus 401 ~vsf~y~~~~~~~vL~~isl~i-----~~Ge~vaiVG~sGsGK----------------------i~~V~Q~~-~Lf~gT 452 (607)
+.-++|++- ...+.+..|++ ..||.++++||+|-|| ++|=||-- .-|+||
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gt 417 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGT 417 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCc
Confidence 344566543 23556777765 4668999999999999 89999942 239999
Q ss_pred HHHHhhcCCCCCCCHHHHH-HHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 007337 453 IEENIAYGCDGKASSADIE-NAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531 (607)
Q Consensus 453 IreNI~~g~~~~~~~~~i~-~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL 531 (607)
|++=+.-..+..+.+..++ +.++-.++++.+ ...-.+||||+.||+|||-||.+++|+|+||||++.|
T Consensus 418 V~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~-----------e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 418 VEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL-----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred HHHHHHHhhhhhcccchhHHhhcCccchHHHH-----------hcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 9998765433223333332 445555554443 3345679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC
Q 007337 532 DAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSD 573 (607)
Q Consensus 532 D~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~ 573 (607)
|.+..-.+.+.|++.. .++|.++|-|++..+.. +|+++|.+.
T Consensus 487 DvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 487 DVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999988888888765 47899999999999875 899999964
No 402
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.72 E-value=7.5e-17 Score=166.76 Aligned_cols=180 Identities=24% Similarity=0.439 Sum_probs=142.1
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
..-++++|++..-+. +.+.+++|||+|++||+++|.|-.|.|-
T Consensus 255 ~~vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 255 EVVLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CeEEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 345899999986432 3468999999999999999999999986
Q ss_pred ---eEEEccCCC----cccccHHHHhhcCCCCC--------CCHHHHHHHHHHcCchHHHHhC---CccccccccCCCCC
Q 007337 439 ---ISIVSQEPV----LFNCSIEENIAYGCDGK--------ASSADIENAAKMANAHDFISNF---PEKYQTFVGERGVR 500 (607)
Q Consensus 439 ---i~~V~Q~~~----Lf~gTIreNI~~g~~~~--------~~~~~i~~al~~a~l~~~i~~l---p~G~~T~ige~G~~ 500 (607)
++|||.|-+ ..+-|+.||+.++.-.. .+..++.+.++. .++.+ +.+-++ .-.+
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-----li~~fdVr~~~~~~----~a~~ 403 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARE-----LIEEFDVRAPSPDA----PARS 403 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHH-----HHHHcCccCCCCCc----chhh
Confidence 789998874 68899999999875311 122333333322 23322 233333 3467
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHh-cCCCeEEEEccCchhh-hhcCEEEEEeCCEEeE
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL-MKGRTVLVIAHRLSTV-QSADTVAVVSDGEIVE 578 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~-~~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive 578 (607)
||||+.||+-+||-+.++|++||...||-+||..+.+.|.+.|.+. .+++.+++|+-.|+.+ .-||+|.||.+|+|+.
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 9999999999999999999999999999999999999999888765 4689999999999865 6799999999999998
Q ss_pred ecChhH
Q 007337 579 SGTHEE 584 (607)
Q Consensus 579 ~G~~~e 584 (607)
..+.++
T Consensus 484 ~~~~~~ 489 (501)
T COG3845 484 IVPPEE 489 (501)
T ss_pred cccccc
Confidence 777665
No 403
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.71 E-value=4.4e-17 Score=186.87 Aligned_cols=138 Identities=24% Similarity=0.380 Sum_probs=106.3
Q ss_pred CCcccccHHHHhhcCCCCCCCHH--H-----HHHHHHHcCchHHHHhCCcccccc-ccCCCCCCChhHHHHHHHHHHHhc
Q 007337 446 PVLFNCSIEENIAYGCDGKASSA--D-----IENAAKMANAHDFISNFPEKYQTF-VGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 446 ~~Lf~gTIreNI~~g~~~~~~~~--~-----i~~al~~a~l~~~i~~lp~G~~T~-ige~G~~LSGGQkQRialARAll~ 517 (607)
+.++..||.|-+.|...-..+.+ + +.+..+.. ++++.+ |++.. ....-.+|||||||||+|||||..
T Consensus 432 ~~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl---~~L~~v--GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~ 506 (943)
T PRK00349 432 GEVSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERL---KFLVDV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGS 506 (943)
T ss_pred HHHhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH---HHhhcc--ccCCCCCCCchhhCCHHHHHHHHHHHHHhh
Confidence 34567788888877532111221 1 11122221 234443 55433 466778999999999999999999
Q ss_pred CC--CEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEEEEE------eCCEEeEecChhHHhhc
Q 007337 518 NP--RILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSK 588 (607)
Q Consensus 518 ~~--~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~ 588 (607)
+| ++|||||||++||++....+.+.|+++.+ ++|+|+|+|+++.+..||+|++| ++|+|+..|+.+++.+.
T Consensus 507 ~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 507 GLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 97 99999999999999999999999988753 78999999999999999999999 99999999999998654
No 404
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=1.1e-16 Score=193.80 Aligned_cols=119 Identities=25% Similarity=0.299 Sum_probs=106.1
Q ss_pred cccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH------HHHHHHHHhcCCCE
Q 007337 448 LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ------RVAIARALMMNPRI 521 (607)
Q Consensus 448 Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ------RialARAll~~~~I 521 (607)
.|+||++|||.+ +| +.+++ +.+++.++.++++..+|.| +|.++.+| +||||||| |++||||++.+|++
T Consensus 1153 ~~~~~~~~~i~~-~~-~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~~i 1226 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RS-DADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGI 1226 (1311)
T ss_pred HcCccHHHHhhc-CC-CCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCCCE
Confidence 599999999999 66 67766 7999999999999999999 99999886 89999999 99999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc------CCCeEEEEccCchhhh------hcCEEEEEe
Q 007337 522 LLLDEATSALDAESEYLVQDAMDSLM------KGRTVLVIAHRLSTVQ------SADTVAVVS 572 (607)
Q Consensus 522 llLDE~TSaLD~~te~~i~~~l~~~~------~~~TvI~ItHrl~~l~------~aD~Iivl~ 572 (607)
|+|||||++||+.+...+.+.|..+. .+.|+|+|||++..+. .+|+.+-+.
T Consensus 1227 l~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1227 IALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLK 1289 (1311)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeee
Confidence 99999999999999999998887763 3679999999999876 456766553
No 405
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=8.3e-17 Score=184.28 Aligned_cols=100 Identities=30% Similarity=0.457 Sum_probs=89.8
Q ss_pred ccccc-ccCCCCCCChhHHHHHHHHHHHhcCC--CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh
Q 007337 489 KYQTF-VGERGVRLSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS 564 (607)
Q Consensus 489 G~~T~-ige~G~~LSGGQkQRialARAll~~~--~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~ 564 (607)
|++.. ++.....|||||+||++|||||..+| ++|||||||++||++....+.+.|+++. +++|+|+|+|+++.++.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 44432 56778899999999999999999986 8999999999999999999999998874 47899999999999999
Q ss_pred cCEEEEE------eCCEEeEecChhHHhhc
Q 007337 565 ADTVAVV------SDGEIVESGTHEELLSK 588 (607)
Q Consensus 565 aD~Iivl------~~G~Ive~G~~~eL~~~ 588 (607)
||+|++| ++|+|++.|+.+++.+.
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 89999999999998643
No 406
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.67 E-value=4.5e-17 Score=157.10 Aligned_cols=144 Identities=16% Similarity=0.208 Sum_probs=101.4
Q ss_pred cccceEEeeCCC-EEEEEcCCCCcc------e---EEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHH
Q 007337 415 LKGITLKLLSGS-KIALVGPSGGGK------I---SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFIS 484 (607)
Q Consensus 415 L~~isl~i~~Ge-~vaiVG~sGsGK------i---~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~ 484 (607)
..++||++.+|+ .++|+||+|||| + .+.+|.....+. .++..++. ++....
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~--~~~~~~~~-----------------~~~~~~ 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA--AEGSSLPV-----------------FENIFA 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc--cccccCcC-----------------ccEEEE
Confidence 347899999996 699999999999 2 223333322221 11221110 111111
Q ss_pred hCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEccCchhh
Q 007337 485 NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD-AMDSLM-KGRTVLVIAHRLSTV 562 (607)
Q Consensus 485 ~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~-~l~~~~-~~~TvI~ItHrl~~l 562 (607)
.+ |.+..+.+.-..+|+|+|||..|++++ .+|+++++||||+++|+.+...+.. .++.+. .++|+|++||..+..
T Consensus 78 ~l--g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~ 154 (200)
T cd03280 78 DI--GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELK 154 (200)
T ss_pred ec--CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHH
Confidence 11 222234455578999999999999995 8999999999999999998777754 455543 378999999998888
Q ss_pred hhcCEEEEEeCCEEeEec
Q 007337 563 QSADTVAVVSDGEIVESG 580 (607)
Q Consensus 563 ~~aD~Iivl~~G~Ive~G 580 (607)
+.||++++|++|+++..+
T Consensus 155 ~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 155 AYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHhcCCCeEEEEEEEec
Confidence 899999999999997663
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.66 E-value=4.9e-16 Score=144.59 Aligned_cols=73 Identities=29% Similarity=0.408 Sum_probs=67.6
Q ss_pred CChhHHHHHHHHHHHhc----CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEEEEEeC
Q 007337 501 LSGGQKQRVAIARALMM----NPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 501 LSGGQkQRialARAll~----~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
||+||+||++|||++.. +|+++|||||++++|++....+.+.+.+... ++|+|++||+++....+|++++|+.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999999999999986 7899999999999999999999999987644 5899999999999999999999965
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.63 E-value=4.3e-16 Score=158.57 Aligned_cols=154 Identities=24% Similarity=0.379 Sum_probs=115.8
Q ss_pred eEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------------
Q 007337 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------------ 438 (607)
Q Consensus 401 ~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------------ 438 (607)
++.-+|..+ ...|.++- +.++|+.++|+|++|-||
T Consensus 79 e~vHRYg~N--gFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVN--GFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCC--ceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 456677543 23444433 357999999999999999
Q ss_pred -----------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHH
Q 007337 439 -----------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQ 507 (607)
Q Consensus 439 -----------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQ 507 (607)
+-||.-=|-.+.||++|=+.--++ . -...++.+..+|.+ .+...-..||||+-|
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de-~---g~~devve~l~L~n-----------vl~r~v~~LSGGELQ 220 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDE-R---GKFDEVVERLGLEN-----------VLDRDVSELSGGELQ 220 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhhhh-c---CcHHHHHHHhcchh-----------hhhhhhhhcCchHHH
Confidence 334555566777777776654322 1 12334444444443 344456789999999
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEe
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVS 572 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~-aD~Iivl~ 572 (607)
|+|||-|+.|++|+|++|||||-||-...-..-+.|+++.+ +|+||+|-|+|..+.. +|.|.++-
T Consensus 221 r~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 221 RVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999988888888998887 6999999999999975 88888774
No 409
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.61 E-value=7e-15 Score=135.05 Aligned_cols=188 Identities=20% Similarity=0.325 Sum_probs=130.5
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------eEEEccCCCc--------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------ISIVSQEPVL-------- 448 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i~~V~Q~~~L-------- 448 (607)
+..|+++++.|+|+.. + |++-|+|+++|.|..+.+||.+|||| |.+..-+|+-
T Consensus 11 ~~aievsgl~f~y~~~-d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS-D-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC-C-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 4579999999999875 3 89999999999999999999999999 3333333321
Q ss_pred ---c-cccHHHHhhcCCC----CCCCHHHHHHHHHHcCchHHHH--hCCccccccccCCCCCCChhHHHHHHHHHHHhcC
Q 007337 449 ---F-NCSIEENIAYGCD----GKASSADIENAAKMANAHDFIS--NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 518 (607)
Q Consensus 449 ---f-~gTIreNI~~g~~----~~~~~~~i~~al~~a~l~~~i~--~lp~G~~T~ige~G~~LSGGQkQRialARAll~~ 518 (607)
+ -|.=..|.....+ .+++-++ .+.-++-.++.. .|-+=+|-.+-=+-..+|-|||.|+.|+-.|++.
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae~---mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~P 165 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAEH---MIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKP 165 (291)
T ss_pred ceeEecccccccccccccccccccccHHH---HHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccc
Confidence 0 0011111111100 0122222 222222222210 1111123333335567899999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
=++|+|||.|--||.-..+.+.+-++... +++|+|+.||=..-++ .+.+++.|.+|+++..-++++..
T Consensus 166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~~~~i~ 236 (291)
T KOG2355|consen 166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLKYQKIK 236 (291)
T ss_pred eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccccchhh
Confidence 99999999999999999999999987654 5889999999998665 58999999999999866555543
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.61 E-value=7.6e-16 Score=150.38 Aligned_cols=151 Identities=19% Similarity=0.166 Sum_probs=100.9
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcceEEEccCCCcccccHHHHhhcCCCCCCCHHH---HHHHHHHcCchHHHHhCC
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSAD---IENAAKMANAHDFISNFP 487 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGKi~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~---i~~al~~a~l~~~i~~lp 487 (607)
...+.+|+++++++++.+.|.||+||||..+.-+=.. -++.-.+-+.-| .+..+ +.+.+...++.+.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---~~~la~~g~~vp--a~~~~~~~~~~il~~~~l~d~----- 85 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---IVLMAQIGCFVP--CDSADIPIVDCILARVGASDS----- 85 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---HHHHHHhCCCcC--cccEEEeccceeEeeeccccc-----
Confidence 3468899999999999999999999999111000000 011222221111 11110 0111222222211
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHH--hcCCCEEEEecc---CCCCCHHHHHH-HHHHHHHhcCCCeEEEEccCchh
Q 007337 488 EKYQTFVGERGVRLSGGQKQRVAIARAL--MMNPRILLLDEA---TSALDAESEYL-VQDAMDSLMKGRTVLVIAHRLST 561 (607)
Q Consensus 488 ~G~~T~ige~G~~LSGGQkQRialARAl--l~~~~IllLDE~---TSaLD~~te~~-i~~~l~~~~~~~TvI~ItHrl~~ 561 (607)
...++|.|++|+..+|+++ +.+|+++||||| |+.+|+.+... +.+.+.+ ..++|+|++||..+.
T Consensus 86 ---------~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el 155 (222)
T cd03285 86 ---------QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHEL 155 (222)
T ss_pred ---------hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHH
Confidence 1357999999999999999 899999999999 99999985543 3355543 247899999997667
Q ss_pred hhhcCEEEEEeCCEEeEecC
Q 007337 562 VQSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 562 l~~aD~Iivl~~G~Ive~G~ 581 (607)
.+.||++..+++|++...++
T Consensus 156 ~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 156 TALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHhhcCCCeEEEEEEEEEe
Confidence 77899999999999977653
No 411
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.60 E-value=9.1e-15 Score=147.23 Aligned_cols=154 Identities=29% Similarity=0.444 Sum_probs=118.7
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEEcc--CCCcccccHHHH
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIVSQ--EPVLFNCSIEEN 456 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V~Q--~~~Lf~gTIreN 456 (607)
..+|+|+||+|+||+.++|||+||||| -+.+|- ||.+=.-||.|.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tileh 475 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEH 475 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHH
Confidence 368999999999999999999999999 122332 333334466666
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHH
Q 007337 457 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE 536 (607)
Q Consensus 457 I~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te 536 (607)
+.=- .-|-..-.+++..+++.|-+. |. ..=..||-|||-|..||+++...|.+++.||.-|+||+.|.
T Consensus 476 l~s~---tGD~~~AveILnraGlsDAvl-----yR----r~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA 543 (593)
T COG2401 476 LRSK---TGDLNAAVEILNRAGLSDAVL-----YR----RKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTA 543 (593)
T ss_pred Hhhc---cCchhHHHHHHHhhccchhhh-----hh----ccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHH
Confidence 5311 112223457788888876543 22 22356999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--CCCeEEEEccCchhhhh--cCEEEEEeCCEEe
Q 007337 537 YLVQDAMDSLM--KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIV 577 (607)
Q Consensus 537 ~~i~~~l~~~~--~~~TvI~ItHrl~~l~~--aD~Iivl~~G~Iv 577 (607)
..+...|.++. .+.|.++||||.+.+.. -|+++.+.=|+..
T Consensus 544 ~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 544 VRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 99999998877 58899999999998875 5898888766543
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=8.9e-15 Score=147.76 Aligned_cols=88 Identities=22% Similarity=0.224 Sum_probs=69.1
Q ss_pred CCccccccccCCCC----CCChhHHHHHHHHHHHh---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeE
Q 007337 486 FPEKYQTFVGERGV----RLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTV 552 (607)
Q Consensus 486 lp~G~~T~ige~G~----~LSGGQkQRialARAll---------~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~Tv 552 (607)
-|+.++..+.-++. -+|+||+|+++|||++. ++|+++||||||++||+.....+.+.+.+. . .+
T Consensus 165 g~~~d~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~ 241 (270)
T cd03242 165 GPHRDDLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QT 241 (270)
T ss_pred CCChhheEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CE
Confidence 46666666554443 37999999999999974 799999999999999999999999999775 2 45
Q ss_pred EEEccCchhhhh-c---CEEEEEeCCEE
Q 007337 553 LVIAHRLSTVQS-A---DTVAVVSDGEI 576 (607)
Q Consensus 553 I~ItHrl~~l~~-a---D~Iivl~~G~I 576 (607)
++++|....+.+ | ++|+.+++|+|
T Consensus 242 ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 242 FVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred EEEeCCchhccchhccCccEEEEeCcEE
Confidence 555555544433 4 78999999986
No 413
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.57 E-value=4.8e-15 Score=168.87 Aligned_cols=169 Identities=27% Similarity=0.424 Sum_probs=142.1
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eEEEccCCCcc-cccHH
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ISIVSQEPVLF-NCSIE 454 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~~V~Q~~~Lf-~gTIr 454 (607)
-.+|+|+|.-++||+.+-+.||.|||| ++|.+|+...| .-|+|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 368999999999999999999999999 88999877666 68999
Q ss_pred HHhhcCCC--------CCCCHHHHH-----HHHHHcCchHHHHhCCccccccccCC-CCCCChhHHHHHHHHHHHhcCCC
Q 007337 455 ENIAYGCD--------GKASSADIE-----NAAKMANAHDFISNFPEKYQTFVGER-GVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 455 eNI~~g~~--------~~~~~~~i~-----~al~~a~l~~~i~~lp~G~~T~ige~-G~~LSGGQkQRialARAll~~~~ 520 (607)
|-|.|... ++.++.|.. .+++.- .|....||.||.+ .+..|||||.|+++|-++..++.
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkil-------GL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~ 280 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKIL-------GLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPAS 280 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHh-------CchhhccceecccccccccCcccceeeeeeeeecCcc
Confidence 99988421 123444433 233333 4556799999975 56799999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCch--hhhhcCEEEEEeCCEEeEecChhHHhh
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLS--TVQSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~--~l~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
++.+||+|-+||+-|.-+|.++|+++.+ +.|.++.=|+.+ +..-.|+|++|.+|+++-+|+.++.+.
T Consensus 281 ~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~ 351 (1391)
T KOG0065|consen 281 ILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLP 351 (1391)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHH
Confidence 9999999999999999999999987643 778888888875 688899999999999999999988754
No 414
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.54 E-value=7.2e-15 Score=164.58 Aligned_cols=106 Identities=29% Similarity=0.459 Sum_probs=91.3
Q ss_pred HHHHHHHHcCchHHHHhCCccccccccCCC------CCCChhHHHHHHHHHHHh----------cCCCEEEEeccC-CCC
Q 007337 469 DIENAAKMANAHDFISNFPEKYQTFVGERG------VRLSGGQKQRVAIARALM----------MNPRILLLDEAT-SAL 531 (607)
Q Consensus 469 ~i~~al~~a~l~~~i~~lp~G~~T~ige~G------~~LSGGQkQRialARAll----------~~~~IllLDE~T-SaL 531 (607)
.+.+.|+..+. ++...+|+++++.+++.| .+||||||||++||||++ .+|+++|||||| ++|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~l 510 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGAL 510 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCccc
Confidence 35555555543 445568999999999988 689999999999999887 599999999998 789
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC-CEE
Q 007337 532 DAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD-GEI 576 (607)
Q Consensus 532 D~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~-G~I 576 (607)
|+.+...+.+.|.++ +++|+|+|||+......||++++|++ |+.
T Consensus 511 d~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 511 DAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred chhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999999999988 78999999999999999999999986 543
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=5.9e-14 Score=141.88 Aligned_cols=180 Identities=22% Similarity=0.424 Sum_probs=132.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------eEEEccCCCcccccHHHH
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------ISIVSQEPVLFNCSIEEN 456 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------i~~V~Q~~~Lf~gTIreN 456 (607)
.|.++|.+.+-. ....+.|-||+|-.|.++++|||+|-|| +-|+.|+..-=+.|--+-
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~t 340 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDT 340 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHH
Confidence 478888777654 3468899999999999999999999999 678888877655554444
Q ss_pred hhcCCC------------------CCC-CHHHHHH---HHHHcCch-------HHHHhCCccccccccCCC-CCCChhHH
Q 007337 457 IAYGCD------------------GKA-SSADIEN---AAKMANAH-------DFISNFPEKYQTFVGERG-VRLSGGQK 506 (607)
Q Consensus 457 I~~g~~------------------~~~-~~~~i~~---al~~a~l~-------~~i~~lp~G~~T~ige~G-~~LSGGQk 506 (607)
++-.+. .+. -.|++.+ -+++.|++ ..+.. -|++-..-++. ..+|||=|
T Consensus 341 vl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGFskEMQ~rPt~kFSGGWR 418 (807)
T KOG0066|consen 341 VLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGFSKEMQERPTTKFSGGWR 418 (807)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCCChhHhcCCccccCCcee
Confidence 432210 000 0122222 22332222 12222 26666676665 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh-cCEEEEEeCCEEe-EecCh
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS-ADTVAVVSDGEIV-ESGTH 582 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Iv-e~G~~ 582 (607)
-|++|||||+-.|-+|.|||||.+||-..--.+.+.|..+ .+|.++|+|.-.++.+ |..|+.||+-+.- ..|+|
T Consensus 419 MRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 419 MRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred eehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 9999999999999999999999999999888888888887 6899999999999976 8999999987762 34555
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.45 E-value=1.7e-13 Score=132.38 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=70.9
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHH-HHHhc-CCCeEEEEccCchhhhhcCEEEEEe
Q 007337 495 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA-MDSLM-KGRTVLVIAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 495 ge~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~-l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~ 572 (607)
.++-..+|++++| +..+-+...+|+++||||||+++|+.....+... ++.+. .++|+|++||+.+.++.+|++..++
T Consensus 86 ~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~ 164 (202)
T cd03243 86 SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVK 164 (202)
T ss_pred cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeE
Confidence 3444567777776 6666777899999999999999999866655444 33332 4789999999999999999999999
Q ss_pred CCEEeEecChhHH
Q 007337 573 DGEIVESGTHEEL 585 (607)
Q Consensus 573 ~G~Ive~G~~~eL 585 (607)
+|++.+.++.+++
T Consensus 165 ~~~~~~~~~~~~~ 177 (202)
T cd03243 165 NLHMEELITTGGL 177 (202)
T ss_pred EEEEEEEecCCee
Confidence 9999988865444
No 417
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.40 E-value=8.7e-13 Score=126.70 Aligned_cols=116 Identities=16% Similarity=0.247 Sum_probs=78.7
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc----------------------eEEEccCCCcc-cccHHHHhhcCCCCCCCHH
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK----------------------ISIVSQEPVLF-NCSIEENIAYGCDGKASSA 468 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~ 468 (607)
+++++|++++ +|+.++|+||||||| -.++.|...+| .-|++||+.++.. ...+
T Consensus 14 ~~v~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s--~~~~ 89 (199)
T cd03283 14 KRVANDIDME--KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGIS--YFYA 89 (199)
T ss_pred CeecceEEEc--CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccC--hHHH
Confidence 4678888766 579999999999999 13455644444 6689999988742 2222
Q ss_pred HHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHH-HHHHhc
Q 007337 469 DIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD-AMDSLM 547 (607)
Q Consensus 469 ~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~-~l~~~~ 547 (607)
+..+ +.+.++.+. .++|+++|+||||+++|+.....+.. .++.+.
T Consensus 90 e~~~------~~~iL~~~~----------------------------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~ 135 (199)
T cd03283 90 ELRR------LKEIVEKAK----------------------------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLK 135 (199)
T ss_pred HHHH------HHHHHHhcc----------------------------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHH
Confidence 2222 122222221 07999999999999999997665443 344432
Q ss_pred -CCCeEEEEccCchhhhhc
Q 007337 548 -KGRTVLVIAHRLSTVQSA 565 (607)
Q Consensus 548 -~~~TvI~ItHrl~~l~~a 565 (607)
++.|+|++||+++.+...
T Consensus 136 ~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 136 NKNTIGIISTHDLELADLL 154 (199)
T ss_pred HCCCEEEEEcCcHHHHHhh
Confidence 478999999999876544
No 418
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.39 E-value=7.4e-13 Score=147.18 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=72.3
Q ss_pred CCCChhHHHHHHHHHHHhcC----CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 007337 499 VRLSGGQKQRVAIARALMMN----PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 574 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~----~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G 574 (607)
..|||||+||++|||+++.. |+++||||||++||+.+...+.+.|.++.+++|+|+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46899999999999999875 69999999999999999999999999988899999999999999999999999987
Q ss_pred E
Q 007337 575 E 575 (607)
Q Consensus 575 ~ 575 (607)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 419
>PRK10869 recombination and repair protein; Provisional
Probab=99.36 E-value=2e-12 Score=142.57 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHHHhc----CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 007337 500 RLSGGQKQRVAIARALMM----NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 575 (607)
Q Consensus 500 ~LSGGQkQRialARAll~----~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~ 575 (607)
.+||||+||++|||+++. +|+++|||||+++||..+...+.+.|+++.+++|+|+|||.+..+..||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 589999999999999996 5899999999999999999999999999878899999999999999999999998753
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.35 E-value=4.9e-12 Score=124.06 Aligned_cols=73 Identities=30% Similarity=0.405 Sum_probs=60.1
Q ss_pred CCChhHHHHHHHH----HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 007337 500 RLSGGQKQRVAIA----RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 500 ~LSGGQkQRialA----RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~ 572 (607)
.||||||-+++|| ..-+.++|++||||+.++||+.....+.+.|.+..+++-+|++||+..+...||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999997 333578999999999999999999999999999988899999999999999999998873
No 421
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=1.2e-11 Score=119.07 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=86.8
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcceEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchH-HHHhCCcc
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHD-FISNFPEK 489 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGKi~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~-~i~~lp~G 489 (607)
++++.+|+++++++|+.++|.|||||||..+.-+=..+ .+..++-+.-| +...++ .+.+ ....++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~---~~la~~G~~vp--a~~~~l-------~~~d~I~~~~~~- 81 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL---AIMAQIGCFVP--AEYATL-------PIFNRLLSRLSN- 81 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH---HHHHHcCCCcc--hhhcCc-------cChhheeEecCC-
Confidence 34789999999999999999999999992211110000 13333332211 111000 1111 1122222
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHH-HHHHHHHHHHhc-CCCeEEEEccCchhhhhcC
Q 007337 490 YQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAES-EYLVQDAMDSLM-KGRTVLVIAHRLSTVQSAD 566 (607)
Q Consensus 490 ~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~t-e~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD 566 (607)
+..+.++-+.+|+|++|+. .+-++..+|+++|||||++++|+.. .....+.++.+. .++|+|++||..+.++.++
T Consensus 82 -~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 82 -DDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred -ccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 2124456678999999764 4455778999999999999999974 333333333332 3789999999999876543
No 422
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.28 E-value=9.9e-12 Score=121.01 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=94.9
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcceEEEccCCCcccccHHHHhhc---CCCCCCCHHHHHHHHHHcCchHHHHhCCc
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAY---GCDGKASSADIENAAKMANAHDFISNFPE 488 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGKi~~V~Q~~~Lf~gTIreNI~~---g~~~~~~~~~i~~al~~a~l~~~i~~lp~ 488 (607)
..+.+|+++++++ +.++|+||+||||..+.-+- .-+..+ |.+.... .+.+. .+.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i--------~~~~~l~~~g~~vp~~---------~~~i~-~~~---- 74 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQV--------ALIALLAQIGSFVPAS---------KAEIG-VVD---- 74 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHH--------HHHHHHhccCCeeccc---------cceec-cee----
Confidence 3578899999887 99999999999991111100 000011 1110010 11110 000
Q ss_pred cccccccCCCCCCChhHHHHH----HHHHHHh--cCCCEEEEecc---CCCCCHHH-HHHHHHHHHHhcCCCeEEEEccC
Q 007337 489 KYQTFVGERGVRLSGGQKQRV----AIARALM--MNPRILLLDEA---TSALDAES-EYLVQDAMDSLMKGRTVLVIAHR 558 (607)
Q Consensus 489 G~~T~ige~G~~LSGGQkQRi----alARAll--~~~~IllLDE~---TSaLD~~t-e~~i~~~l~~~~~~~TvI~ItHr 558 (607)
..-+.++. ..++|.||.++. .|++++- .+|+++||||| |+++|... ...+.+.+.+. .++|+|++||.
T Consensus 75 ~i~~~~~~-~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~ 152 (216)
T cd03284 75 RIFTRIGA-SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHY 152 (216)
T ss_pred eEeccCCc-hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCc
Confidence 11233332 346788877754 4777765 59999999999 99999874 34555556442 37899999999
Q ss_pred chhhhhcCEEEEEeCCEEeEecChhHH
Q 007337 559 LSTVQSADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 559 l~~l~~aD~Iivl~~G~Ive~G~~~eL 585 (607)
.+..+.+|++-.+++|++...++-+++
T Consensus 153 ~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 153 HELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 888888888888888988776655554
No 423
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.26 E-value=1e-07 Score=99.91 Aligned_cols=280 Identities=13% Similarity=0.070 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 82 ASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHL 161 (607)
Q Consensus 82 ~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 161 (607)
....++......+.+.|.+...-..+.. .+.+..+..+..+..+.++......+..|+......+.+..|...+.++-
T Consensus 104 ~v~l~V~~n~w~~~FydaLq~al~~~~~--~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~irWR~wLT~~yl~~W 181 (409)
T PRK11098 104 LVQVSVAVNAWYAPFYDLIQTALSSPGK--VTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHW 181 (409)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455556666777776541000000 01222333333344444444455556667666666777777777777766
Q ss_pred hcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------------HHHHHHHH
Q 007337 162 INQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL-------------TLLALVVV 228 (607)
Q Consensus 162 l~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l-------------~li~l~~~ 228 (607)
++.. ..+ + -=+|++.|+++..+........++.++++.+..+.+++.++..+ ..++++-.
T Consensus 182 l~~r--~ie--n---PDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiya 254 (409)
T PRK11098 182 QKLR--HIE--G---AAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWS 254 (409)
T ss_pred HhcC--CCC--C---ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHH
Confidence 6443 111 2 34699999999999888888888888989988899999888753 33334334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 229 PAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEK-NEISRYSEKVDETLKLGLQQAKVVGLFFGG 307 (607)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (607)
.+-..+..++++++.++.-+.++..+.....+.-.=++.+ +.|. ...+++.+..++..+...+. ......
T Consensus 255 i~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~~----~~l~~f 325 (409)
T PRK11098 255 LFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFHY----MYFNIA 325 (409)
T ss_pred HHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4444555667777777776666666555543322222222 1222 23333444333333332222 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007337 308 LNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVS 379 (607)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 379 (607)
......+..++-..+.+.....|++|.|.+......+.++...++.+.+.+..+.+-.+..+|+.++.+..+
T Consensus 326 ~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~l~ 397 (409)
T PRK11098 326 RILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAALD 397 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 233333444444455677888999999999999999999999999999999999999999999999876543
No 424
>PRK12369 putative transporter; Reviewed
Probab=99.22 E-value=2.6e-07 Score=95.00 Aligned_cols=281 Identities=16% Similarity=0.093 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 81 IASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSH 160 (607)
Q Consensus 81 ~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 160 (607)
.....++....+.+.+.|.+......|.+. .....+..+..+.++.++...+.....|+..+...+.+..|...+.++
T Consensus 28 ~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~--~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~~ 105 (326)
T PRK12369 28 YQVSLNVAINEWYGDFYDLLQKAKIEPNNH--TAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLKF 105 (326)
T ss_pred HHHHHhhhhhHHhHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666677777776421011000 122333334444444445555556677777777777888888888887
Q ss_pred HhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------------HHHHHHH
Q 007337 161 LINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLT------------LLALVVV 228 (607)
Q Consensus 161 ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~------------li~l~~~ 228 (607)
-+...-. -++ +- +|++.|++...+........++.+++..+..+.+++.+++.+. .++++..
T Consensus 106 wl~~~~~--iDN-PD---QRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiya 179 (326)
T PRK12369 106 WRNKRDN--IEG-SS---QRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLIS 179 (326)
T ss_pred HhcCCCC--CCC-cc---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHHH
Confidence 7763211 112 22 6999999999998888888889999999999999998775443 2233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 229 PAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQE-KNEISRYSEKVDETLKLGLQQAKVVGLFFGG 307 (607)
Q Consensus 229 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (607)
.+...+..++++++.+...+.++..+.....+.-.=++-+. | .| ....+++.+..+...+...+..+. ...
T Consensus 180 i~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~-~E~~~l~~~f~~v~~n~~~~~~~~~~l----~~~ 251 (326)
T PRK12369 180 LGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y-AKPETLIELFTGLRFNYFRLFLHYGYF----NIW 251 (326)
T ss_pred HHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h-hhHHHHHHHHHHHHHHHHHHHHHHHhH----HHH
Confidence 44445556677777777666655555544322211111111 1 11 233444444444433333322222 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 308 LNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
......+..++-..+.+.....|+++.|.+......+..+..++..+.+.+..+.+-.+..+|+.++.+.
T Consensus 252 ~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 252 LISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334444444556778889999999999999999999999999999999999999999999998754
No 425
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.22 E-value=6.3e-11 Score=129.24 Aligned_cols=139 Identities=28% Similarity=0.396 Sum_probs=100.6
Q ss_pred cccHHHHhhcCCCCCCCHHH---HHHHHHHc-CchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC--CCEEE
Q 007337 450 NCSIEENIAYGCDGKASSAD---IENAAKMA-NAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN--PRILL 523 (607)
Q Consensus 450 ~gTIreNI~~g~~~~~~~~~---i~~al~~a-~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~--~~Ill 523 (607)
.-+|+|-..|...-+.++.+ ....++.. .=-.|+...--||-|. ......|||||.|||-||+.+-.. -=+||
T Consensus 428 ~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYV 506 (935)
T COG0178 428 EMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYV 506 (935)
T ss_pred hccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEE
Confidence 44677777666432222322 11222211 0113555555555553 445678999999999999999987 46889
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCCEEeEecChhHHhhcC
Q 007337 524 LDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSKG 589 (607)
Q Consensus 524 LDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~~ 589 (607)
||||+.+|-+.--.++.+.|+++. .+.|+|+|-|+.++++.||+|+-| ..|+|+.+|+++|+++++
T Consensus 507 LDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 507 LDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLANP 579 (935)
T ss_pred ecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhCC
Confidence 999999999985555556666653 489999999999999999999998 479999999999999875
No 426
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.20 E-value=1.2e-07 Score=96.37 Aligned_cols=226 Identities=15% Similarity=0.119 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 76 TVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVARLRK 155 (607)
Q Consensus 76 ~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 155 (607)
+++.++.+.+++....+.+.+.+.+.... .......++.++++.+..+++.....|+....+.+.+..+..
T Consensus 33 l~l~l~~~~lsv~~~~~~g~~~~aL~~~d---------~~~f~~~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~ 103 (281)
T PF06472_consen 33 LLLLLARVYLSVRINFWNGDFYNALQQKD---------LQAFWRLLLLFLLLAIASALLNSILKYLRQRLALRWREWLTR 103 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666677777788888776532 223334444555555666666777788888888888888888
Q ss_pred HHHHHHhcCCchhhccc----CchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHH
Q 007337 156 NLFSHLINQEIAFYDVT----RTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL-LALVVVPA 230 (607)
Q Consensus 156 ~~~~~ll~~~~~~~~~~----~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l-i~l~~~~l 230 (607)
.+.++-++-. .||.-. ...+.=+|++.|++.+.+.....+..++.+++.++.....++..++.+++ ++++...+
T Consensus 104 ~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~ 182 (281)
T PF06472_consen 104 HLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAIL 182 (281)
T ss_pred HHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 8888888777 555422 23455669999999999999998889999999999999999998888887 55666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 231 ISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKVVGLFFGGLNA 310 (607)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (607)
...+..++++...++..+.++..++......-..++.+.|-.|+-|+.+.++..+...+..+...+..........+..+
T Consensus 183 ~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~ 262 (281)
T PF06472_consen 183 GTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNF 262 (281)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999998999999999999999999999999888888776666655555554444443
Q ss_pred H
Q 007337 311 A 311 (607)
Q Consensus 311 ~ 311 (607)
.
T Consensus 263 ~ 263 (281)
T PF06472_consen 263 Y 263 (281)
T ss_pred H
Confidence 3
No 427
>PRK01156 chromosome segregation protein; Provisional
Probab=99.15 E-value=9e-11 Score=138.39 Aligned_cols=76 Identities=30% Similarity=0.400 Sum_probs=67.2
Q ss_pred CCCCCChhHHHHHHH------HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC---C-CeEEEEccCchhhhhcC
Q 007337 497 RGVRLSGGQKQRVAI------ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK---G-RTVLVIAHRLSTVQSAD 566 (607)
Q Consensus 497 ~G~~LSGGQkQRial------ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~---~-~TvI~ItHrl~~l~~aD 566 (607)
....|||||+||++| ||+++.+|++++|||||++||+.+...+.+.+...+. + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 5999999999999999999999998888888865332 2 48999999999999999
Q ss_pred EEEEEe
Q 007337 567 TVAVVS 572 (607)
Q Consensus 567 ~Iivl~ 572 (607)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 428
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.13 E-value=1.5e-10 Score=117.64 Aligned_cols=173 Identities=23% Similarity=0.342 Sum_probs=123.7
Q ss_pred EEECCCCCCCcccccceEEeeCCC-----EEEEEcCCCCcc-----------------------eEEEccCC-CcccccH
Q 007337 403 WFAYPSRPNHMVLKGITLKLLSGS-----KIALVGPSGGGK-----------------------ISIVSQEP-VLFNCSI 453 (607)
Q Consensus 403 sf~y~~~~~~~vL~~isl~i~~Ge-----~vaiVG~sGsGK-----------------------i~~V~Q~~-~Lf~gTI 453 (607)
.++||+- ...+.+..|.|+.|+ .+...|++|-|| ++|=||.- .=|.||+
T Consensus 342 ~y~Yp~m--~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tv 419 (592)
T KOG0063|consen 342 RYSYPKM--KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTV 419 (592)
T ss_pred eeccCcc--eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchH
Confidence 4678753 467889999999985 678899999999 88888863 3588898
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCH
Q 007337 454 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 533 (607)
Q Consensus 454 reNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~ 533 (607)
|+-+. +++|.+--.-.+..++.. |--.+-.++..-.+||||+.||+|||=+|-+.+++++.|||.+-||+
T Consensus 420 R~ll~---------~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDS 489 (592)
T KOG0063|consen 420 RQLLH---------TKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDS 489 (592)
T ss_pred HHHHH---------HHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcCh
Confidence 87552 122222222222222222 33334445666789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh--cCCCeEEEEccCchhhh-hcCEEEEEeC--CEEeEecChhHHhh
Q 007337 534 ESEYLVQDAMDSL--MKGRTVLVIAHRLSTVQ-SADTVAVVSD--GEIVESGTHEELLS 587 (607)
Q Consensus 534 ~te~~i~~~l~~~--~~~~TvI~ItHrl~~l~-~aD~Iivl~~--G~Ive~G~~~eL~~ 587 (607)
+....--..+++. ..+||-.+|-|.+-... -|||++|.+. ....-.-+++.|++
T Consensus 490 eQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 490 EQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 9776666666553 35799999999986654 4999999875 33333344555544
No 429
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=99.11 E-value=3.4e-07 Score=87.41 Aligned_cols=178 Identities=15% Similarity=0.147 Sum_probs=134.0
Q ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 63 ALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLF 142 (607)
Q Consensus 63 ~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (607)
+.++.+++++.....+.+...++.++.|++.+..||.+.++.. . ..+.+.++.++..+....|..+-
T Consensus 3 ~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~---------~----~~~~~~~~~l~~~~igaaRR~~D 69 (237)
T PF13748_consen 3 AIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDV---------W----QALMYAALVLLMWAIGAARRIYD 69 (237)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH---------H----HHHHHHHHHHHHHHHhhhhHHHh
Confidence 4678899999999999999999999999999999999876531 1 12233333444445555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 007337 143 SSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKLTL 222 (607)
Q Consensus 143 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 222 (607)
.++-.++..++-..++.+-- .+..+.+.+..|.+- ...+.||+-..++.++.+++++++++++++.++.++++
T Consensus 70 TRvf~rIy~~la~~vi~~qr------~~~~~~S~i~ARv~l-sRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~ 142 (237)
T PF13748_consen 70 TRVFSRIYAELAVPVILSQR------QQGLSVSTIAARVAL-SREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGL 142 (237)
T ss_pred hHHHHHHHHHHhHHHHHHHH------HhCCChhHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665544432 344677889999865 66688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 223 LALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIA 260 (607)
Q Consensus 223 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (607)
.+++.+.++..+...+.++..+...+.....++..+.+
T Consensus 143 ~~l~~l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV~~i 180 (237)
T PF13748_consen 143 ACLLILALFLLILPRFARRNYRLYRRLNNRLEKEVDII 180 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHh
Confidence 99999888888888888877777776666555554443
No 430
>PRK03918 chromosome segregation protein; Provisional
Probab=99.10 E-value=1.7e-10 Score=136.26 Aligned_cols=75 Identities=33% Similarity=0.413 Sum_probs=67.1
Q ss_pred CCCChhHHH------HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEEEEE
Q 007337 499 VRLSGGQKQ------RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVV 571 (607)
Q Consensus 499 ~~LSGGQkQ------RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~aD~Iivl 571 (607)
..|||||+| |+||||++..+|+++||||||++||+.+...+.+.|..+.. +.|+|+|||+......||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 56667788999999999999999999999999999887643 57999999999999999999999
Q ss_pred eC
Q 007337 572 SD 573 (607)
Q Consensus 572 ~~ 573 (607)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 431
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.06 E-value=2.2e-10 Score=139.60 Aligned_cols=75 Identities=27% Similarity=0.329 Sum_probs=68.9
Q ss_pred CCCCCChhHHHHHHHHHHH----hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 007337 497 RGVRLSGGQKQRVAIARAL----MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 571 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAl----l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl 571 (607)
....||||||||++|||++ +++||++||||||++||+.+...+.+.|..+.++.|+|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 3468999999999999998 57889999999999999999999999999887788999999999999999999765
No 432
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=7.5e-10 Score=132.11 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=69.1
Q ss_pred CCCCChhHHHHHHHHHHHhc----------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hc
Q 007337 498 GVRLSGGQKQRVAIARALMM----------NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SA 565 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~----------~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~a 565 (607)
-.+||||+++|++||+||.. +|++|+|||||++||+++...+.+.|..+. .++||++|||...... .+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 46899999999999999985 799999999999999999999999998764 4789999999998765 58
Q ss_pred CEEEEEeCC
Q 007337 566 DTVAVVSDG 574 (607)
Q Consensus 566 D~Iivl~~G 574 (607)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
No 433
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.99 E-value=2.9e-10 Score=96.34 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=42.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc------------------------------eEEEccCCCcccccHHHHhhc
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK------------------------------ISIVSQEPVLFNCSIEENIAY 459 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------i~~V~Q~~~Lf~gTIreNI~~ 459 (607)
++|+++||++++|+.++|+||||||| ++|+||+ +|++||||||.+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~Ni~~ 77 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELIKRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRLNIFL 77 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhhCCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHhhcee
Confidence 58999999999999999999999999 6778887 999999999988
No 434
>PRK00064 recF recombination protein F; Reviewed
Probab=98.98 E-value=1.2e-09 Score=114.71 Aligned_cols=76 Identities=26% Similarity=0.350 Sum_probs=66.4
Q ss_pred CCCChhHHHHHHHHHHHh---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh---cC
Q 007337 499 VRLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS---AD 566 (607)
Q Consensus 499 ~~LSGGQkQRialARAll---------~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~---aD 566 (607)
..+|+||+|+++||+++. ++|||+|||||+|.||+.....+.+.+.+. ++++++.||....++. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999885 799999999999999999999998888653 4689999998876544 46
Q ss_pred EEEEEeCCEE
Q 007337 567 TVAVVSDGEI 576 (607)
Q Consensus 567 ~Iivl~~G~I 576 (607)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 435
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.97 E-value=1.1e-09 Score=133.40 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=69.8
Q ss_pred CCCCChhHHHHHHHHHHHh----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 498 GVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 498 G~~LSGGQkQRialARAll----~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
...||||||++++||+++. ++||++|||||+++||+.....+.+.|..+.++.++|+|||+..++..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 3579999999999999997 578999999999999999999999999988777899999999999999999988753
No 436
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.94 E-value=5.4e-09 Score=101.61 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHH-HHHHHHHHHHHhcC----CCeEEEEccCchhhhhc
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAE-SEYLVQDAMDSLMK----GRTVLVIAHRLSTVQSA 565 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~-te~~i~~~l~~~~~----~~TvI~ItHrl~~l~~a 565 (607)
--+-||+++|+++..+|+++|||||++++|+. ........++.+.+ ..++|++||.++.++..
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 34569999999999999999999999999987 45555556666543 24899999999988765
No 437
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.93 E-value=1.5e-09 Score=103.19 Aligned_cols=71 Identities=18% Similarity=0.189 Sum_probs=53.3
Q ss_pred ccCCCCCCChhHHHHHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHH-HHHHHhc--CCCeEEEEccCchhhhhcCE
Q 007337 494 VGERGVRLSGGQKQRVAIARALMM--NPRILLLDEATSALDAESEYLVQ-DAMDSLM--KGRTVLVIAHRLSTVQSADT 567 (607)
Q Consensus 494 ige~G~~LSGGQkQRialARAll~--~~~IllLDE~TSaLD~~te~~i~-~~l~~~~--~~~TvI~ItHrl~~l~~aD~ 567 (607)
+.++-..+|+|++| +++++.. +|+++|+|||++++|+.....+. ..++.+. .++|+|++||..+..+.+|+
T Consensus 55 ~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 55 LAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred hhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 34555678888877 5555555 99999999999999999655554 4445443 26899999999987777774
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.91 E-value=6.6e-09 Score=118.56 Aligned_cols=130 Identities=21% Similarity=0.274 Sum_probs=86.5
Q ss_pred cEEEEeEEEECCCCCCCccccc-----ceEEeeCC-CEEEEEcCCCCcc---------------eE-EEccCCCcccccH
Q 007337 396 EVELDDVWFAYPSRPNHMVLKG-----ITLKLLSG-SKIALVGPSGGGK---------------IS-IVSQEPVLFNCSI 453 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~-----isl~i~~G-e~vaiVG~sGsGK---------------i~-~V~Q~~~Lf~gTI 453 (607)
.+.++++.. |++++ +|+++.++ +.++|+||+|+|| .| +||..... .-.+
T Consensus 295 ~i~l~~~rh--------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~-~~~~ 365 (771)
T TIGR01069 295 KIILENARH--------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHS-EIPY 365 (771)
T ss_pred CEEEccccC--------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccc-cccc
Confidence 577777543 23333 68888887 9999999999999 22 44443320 0012
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCH
Q 007337 454 EENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 533 (607)
Q Consensus 454 reNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~ 533 (607)
.+++.- ...+ +-.+.++-..||+|++|+..+++++ .+|+++|||||++++|+
T Consensus 366 ~d~i~~----~i~~-----------------------~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~ 417 (771)
T TIGR01069 366 FEEIFA----DIGD-----------------------EQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDP 417 (771)
T ss_pred hhheee----ecCh-----------------------HhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCH
Confidence 223211 0111 1112334567999999999999987 78999999999999999
Q ss_pred HHHHHHH-HHHHHhc-CCCeEEEEccCchhh
Q 007337 534 ESEYLVQ-DAMDSLM-KGRTVLVIAHRLSTV 562 (607)
Q Consensus 534 ~te~~i~-~~l~~~~-~~~TvI~ItHrl~~l 562 (607)
..-..+. ..+..+. +++++|++||..+..
T Consensus 418 ~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 418 DEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 9666664 3444432 478999999998754
No 439
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=98.90 E-value=1.5e-09 Score=110.40 Aligned_cols=135 Identities=24% Similarity=0.371 Sum_probs=100.6
Q ss_pred eCCCEEEEEcCCCCcc-----------------------------------------------------eEEEccCCCcc
Q 007337 423 LSGSKIALVGPSGGGK-----------------------------------------------------ISIVSQEPVLF 449 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK-----------------------------------------------------i~~V~Q~~~Lf 449 (607)
+||+..++||.+|-|| .-||.|=|-.-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 5999999999999999 23555556666
Q ss_pred cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCC
Q 007337 450 NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 529 (607)
Q Consensus 450 ~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TS 529 (607)
.|++.+++.--.+ .+...+++...+|...+. ..-..||||+-||.+||-+..+++|++++|||.|
T Consensus 178 k~~v~~~l~~~~~----r~~~~~~~~~~~L~~~~~-----------re~~~lsggelqrfaia~~~vq~advyMFDEpSs 242 (592)
T KOG0063|consen 178 KGTVGSLLDRKDE----RDNKEEVCDQLDLNNLLD-----------REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSS 242 (592)
T ss_pred HHHHHHHHHHHhh----cccHHHHHHHHHHhhHHH-----------hhhhhcccchhhhhhhhhhhhhhcceeEecCCcc
Confidence 6777777643221 112334444433332221 2235699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEe
Q 007337 530 ALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVS 572 (607)
Q Consensus 530 aLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~ 572 (607)
-||-.....-...|+.+. .++-+|+|-|.|+.+.. .|-|..+-
T Consensus 243 YLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 243 YLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 999997777777777654 58899999999998874 78888874
No 440
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.83 E-value=2.8e-08 Score=94.67 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=87.1
Q ss_pred EEEEcCCCCcceEEEccCCC--cccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhC-CccccccccCCCCCCChh
Q 007337 428 IALVGPSGGGKISIVSQEPV--LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNF-PEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 428 vaiVG~sGsGKi~~V~Q~~~--Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~l-p~G~~T~ige~G~~LSGG 504 (607)
+.|.|++|+||-.++.|-.+ +-+| ++..|... +.+.+++.+-++..+.. +..+ ..|....+......+|+|
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g---~~v~~~s~-e~~~~~~~~~~~~~g~~--~~~l~~~g~l~~~d~~~~~~s~~ 75 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTL-EESPEELIENAESLGWD--LERLEDEGLLAIVDADPDEIGPA 75 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC---CcEEEEEC-CCCHHHHHHHHHHcCCC--hHHHHhcCCeEEEecCccccchh
Confidence 67999999999222211100 0000 11222221 34556666666655543 2221 234445555666788999
Q ss_pred HHH-----HHHHHHH-HhcCCCEEEEeccCCCCC---HHHHHHHHHHHHHhc-CCCeEEEEccCchh---------h-hh
Q 007337 505 QKQ-----RVAIARA-LMMNPRILLLDEATSALD---AESEYLVQDAMDSLM-KGRTVLVIAHRLST---------V-QS 564 (607)
Q Consensus 505 QkQ-----RialARA-ll~~~~IllLDE~TSaLD---~~te~~i~~~l~~~~-~~~TvI~ItHrl~~---------l-~~ 564 (607)
|+| +..+.++ .-.+|+++++||||+.+| ......+.+.+..+. .+.|+|+++|.... + ..
T Consensus 76 ~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~ 155 (187)
T cd01124 76 ESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGDVEYL 155 (187)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCceeEe
Confidence 999 3444444 446899999999999999 666666666665542 47899999998764 3 45
Q ss_pred cCEEEEEeC
Q 007337 565 ADTVAVVSD 573 (607)
Q Consensus 565 aD~Iivl~~ 573 (607)
||.|+.|+.
T Consensus 156 aD~ii~l~~ 164 (187)
T cd01124 156 VDGVIRLRL 164 (187)
T ss_pred eeEEEEEEE
Confidence 899999973
No 441
>PRK02224 chromosome segregation protein; Provisional
Probab=98.83 E-value=6e-09 Score=123.01 Aligned_cols=76 Identities=33% Similarity=0.450 Sum_probs=66.5
Q ss_pred CCCChhHHH------HHHHHHHHhcC------CCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEccCchhhhh
Q 007337 499 VRLSGGQKQ------RVAIARALMMN------PRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTVQS 564 (607)
Q Consensus 499 ~~LSGGQkQ------RialARAll~~------~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~-~TvI~ItHrl~~l~~ 564 (607)
..||||||| |+|+||++..+ ++++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999863 367999999999999999999988877643 3 489999999999999
Q ss_pred cCEEEEEeCC
Q 007337 565 ADTVAVVSDG 574 (607)
Q Consensus 565 aD~Iivl~~G 574 (607)
||++++|+..
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999753
No 442
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.80 E-value=1e-08 Score=121.80 Aligned_cols=75 Identities=33% Similarity=0.401 Sum_probs=63.7
Q ss_pred CCCCChhHHHHHHHHHHHhc--------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcC-E
Q 007337 498 GVRLSGGQKQRVAIARALMM--------NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSAD-T 567 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~--------~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD-~ 567 (607)
-..|||||+||++|||||.. +|++|+|||||++||+.+...+.+.|..+. .++||++|||-.......+ +
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 46899999999999999995 899999999999999999999999998874 5799999999766665543 4
Q ss_pred EEEEe
Q 007337 568 VAVVS 572 (607)
Q Consensus 568 Iivl~ 572 (607)
|.|-.
T Consensus 1027 i~V~k 1031 (1047)
T PRK10246 1027 IKVKK 1031 (1047)
T ss_pred EEEEE
Confidence 44443
No 443
>PRK13695 putative NTPase; Provisional
Probab=98.80 E-value=4.3e-09 Score=99.16 Aligned_cols=81 Identities=14% Similarity=0.198 Sum_probs=66.2
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCEEEEec--cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 496 ERGVRLSGGQKQRVAIARALMMNPRILLLDE--ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 496 e~G~~LSGGQkQRialARAll~~~~IllLDE--~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
.....+||+++-++.+++..+++|+++++|| |+..+|+...+.+.+++ + .++++|+++|.-..-..+|+|..+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhHHHHHHHhccCC
Confidence 3345699999999999999999999999999 55566655555555555 2 47999999999666678999999999
Q ss_pred CEEeEe
Q 007337 574 GEIVES 579 (607)
Q Consensus 574 G~Ive~ 579 (607)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999876
No 444
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.79 E-value=1.1e-08 Score=117.16 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=61.2
Q ss_pred ccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHH-HHHhc-CCCeEEEEccCchhhhhcCEEEEE
Q 007337 494 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA-MDSLM-KGRTVLVIAHRLSTVQSADTVAVV 571 (607)
Q Consensus 494 ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~-l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl 571 (607)
+.++-+.+|+|++|+..|+|++ .+|+++|||||++++|+.....+..+ +..+. +++|+|++||..+....+.....+
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 3345678999999999999999 89999999999999999966655444 33332 478999999998876654332233
Q ss_pred eCCEE
Q 007337 572 SDGEI 576 (607)
Q Consensus 572 ~~G~I 576 (607)
.++.+
T Consensus 463 ~~~~~ 467 (782)
T PRK00409 463 ENASV 467 (782)
T ss_pred EEEEE
Confidence 34544
No 445
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.75 E-value=1.4e-08 Score=98.82 Aligned_cols=120 Identities=22% Similarity=0.216 Sum_probs=68.4
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc---------eEEEccCCCcc-----cccHHHHhhcCCCCCCCHHHHHHHHHHc
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK---------ISIVSQEPVLF-----NCSIEENIAYGCDGKASSADIENAAKMA 477 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK---------i~~V~Q~~~Lf-----~gTIreNI~~g~~~~~~~~~i~~al~~a 477 (607)
.++.+|+++++++|++++|.||+|+|| +.+.+|....- .-.+.++|
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i-------------------- 77 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSV-------------------- 77 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceE--------------------
Confidence 468899999999999999999999999 12222222111 11122222
Q ss_pred CchHHHHhCCccccccccCCC---CCCC--hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHH---H-HHHHHHHHHHhcC
Q 007337 478 NAHDFISNFPEKYQTFVGERG---VRLS--GGQKQRVAIARALMMNPRILLLDEATSALDAE---S-EYLVQDAMDSLMK 548 (607)
Q Consensus 478 ~l~~~i~~lp~G~~T~ige~G---~~LS--GGQkQRialARAll~~~~IllLDE~TSaLD~~---t-e~~i~~~l~~~~~ 548 (607)
-|.+|.+. .++| ..+-+|++-.=.-..+++++|||||.++.|+. + ...+.+.+.+. .
T Consensus 78 -------------~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~ 143 (222)
T cd03287 78 -------------LTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-K 143 (222)
T ss_pred -------------EEEecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-c
Confidence 11111100 0111 12223332222223579999999986665544 3 23445555443 4
Q ss_pred CCeEEEEccCchhhhhc
Q 007337 549 GRTVLVIAHRLSTVQSA 565 (607)
Q Consensus 549 ~~TvI~ItHrl~~l~~a 565 (607)
++|+|++||..+.....
T Consensus 144 ~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 144 KCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCeEEEEcccHHHHHHH
Confidence 78999999999875543
No 446
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.71 E-value=1.6e-09 Score=122.00 Aligned_cols=161 Identities=14% Similarity=0.138 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 244 ELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRY-----SEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIV 318 (607)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (607)
+.............+.+.|.+.++.+||..+.|......| .....+..+...+..........+...+......+
T Consensus 30 ~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~ 109 (644)
T PRK10733 30 RKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPM 109 (644)
T ss_pred ccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHH
Confidence 3344444455567778889999999999999888776666 45555555444443333333333334445555677
Q ss_pred HHHHHHHHHhcCCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCC
Q 007337 319 VVIYGANLTITGSMTPG---ALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDG 395 (607)
Q Consensus 319 ~~~~g~~~~~~g~lt~g---~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 395 (607)
++++|+++++.+.++.| .+++|..+...+..| ..+...+..+.....+.+|+.++.+...+..
T Consensus 110 il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~------------- 175 (644)
T PRK10733 110 LLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS------------- 175 (644)
T ss_pred HHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH-------------
Confidence 78899999999999998 777777766666666 5566667777777777788877765422100
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
..+++..++++| +.++||+||||
T Consensus 176 ------------------~~~~~~~~~~~g--ill~G~~G~GK 198 (644)
T PRK10733 176 ------------------RFQKLGGKIPKG--VLMVGPPGTGK 198 (644)
T ss_pred ------------------HHHhcCCCCCCc--EEEECCCCCCH
Confidence 001122245666 99999999999
No 447
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.68 E-value=2.1e-07 Score=91.61 Aligned_cols=143 Identities=12% Similarity=0.181 Sum_probs=77.2
Q ss_pred eeCCCEEEEEcCCCCcceEEEccCCC--cccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCC-ccccccccCCC
Q 007337 422 LLSGSKIALVGPSGGGKISIVSQEPV--LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFP-EKYQTFVGERG 498 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGKi~~V~Q~~~--Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp-~G~~T~ige~G 498 (607)
+++|+.+.|+|++||||..+..|-.+ +-+| ++..+-.. +.+.+++.+-++..+.+ ++.+- .|.--.+ +-.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~-e~~~~~~~~~~~~~g~~--~~~~~~~~~l~~~-~~~ 93 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVST-QLTTTEFIKQMMSLGYD--INKKLISGKLLYI-PVY 93 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeC-CCCHHHHHHHHHHhCCc--hHHHhhcCcEEEE-Eec
Confidence 78999999999999999111111000 0000 11222211 22344444444443331 11110 0100000 111
Q ss_pred CCCChhHHHHHHHHHHHhc----CCCEEEEeccCCCC----CHHHHHHHHHHHHHhcC-CCeEEEEccCchhhh------
Q 007337 499 VRLSGGQKQRVAIARALMM----NPRILLLDEATSAL----DAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQ------ 563 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~----~~~IllLDE~TSaL----D~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~------ 563 (607)
..+|+++.++-.++|.+-. +|+++++||||+.+ |+...+.+.+.++.+.+ ++|+ ++||......
T Consensus 94 ~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~ 172 (230)
T PRK08533 94 PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTI 172 (230)
T ss_pred ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEeccccccccccee
Confidence 2467777666555554443 69999999999999 77766778888776644 5655 4556554321
Q ss_pred ---hcCEEEEEe
Q 007337 564 ---SADTVAVVS 572 (607)
Q Consensus 564 ---~aD~Iivl~ 572 (607)
-||-|+.|+
T Consensus 173 ~~~~~DgvI~L~ 184 (230)
T PRK08533 173 LRTAATMLIRLE 184 (230)
T ss_pred EEEeeeEEEEEE
Confidence 257788776
No 448
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.60 E-value=9.6e-08 Score=95.66 Aligned_cols=69 Identities=23% Similarity=0.412 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh--h------------hhcCEEEEEeC
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST--V------------QSADTVAVVSD 573 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~--l------------~~aD~Iivl~~ 573 (607)
-..++|+ .+|+++|+|||++ +..+...++.+..++|+|+++|..+. + ..+|++++|++
T Consensus 186 ~~~~i~~--~~P~villDE~~~------~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~ 257 (270)
T TIGR02858 186 MMMLIRS--MSPDVIVVDEIGR------EEDVEALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSR 257 (270)
T ss_pred HHHHHHh--CCCCEEEEeCCCc------HHHHHHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEec
Confidence 4556666 4999999999974 23344444444468999999997655 3 45899999998
Q ss_pred CEEeEecChhHHh
Q 007337 574 GEIVESGTHEELL 586 (607)
Q Consensus 574 G~Ive~G~~~eL~ 586 (607)
|+ ..|+.+++.
T Consensus 258 ~~--~~g~~~~i~ 268 (270)
T TIGR02858 258 RK--GPGTVEAVY 268 (270)
T ss_pred CC--CCCceeecc
Confidence 86 667766553
No 449
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.57 E-value=8.7e-08 Score=100.66 Aligned_cols=63 Identities=35% Similarity=0.421 Sum_probs=56.9
Q ss_pred CCCChhHHHHHHHHHHHhc---------CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh
Q 007337 499 VRLSGGQKQRVAIARALMM---------NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~---------~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~ 563 (607)
..+|.||+++++||.++.. +|||+|||||+|.||+.....+.+.|.+. +.+++++||.++.++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999998753 679999999987654
No 450
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.55 E-value=0.00098 Score=66.77 Aligned_cols=226 Identities=16% Similarity=0.062 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 135 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (607)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 214 (607)
..+..++......|-+..|..-.+++--++ ++.--..+|+..|+-+....+-.....++.++.+.+..+-+++
T Consensus 73 ~v~~~ff~shyiFrWR~Am~~yY~~~W~~~-------r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~ 145 (315)
T PF05992_consen 73 AVLNSFFVSHYIFRWRTAMNEYYMSHWPKL-------RHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILW 145 (315)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444566666666666654433 2333346799999999998887777788888878777777777
Q ss_pred HHhHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHH
Q 007337 215 ATSWKLT-------------LLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEIS 281 (607)
Q Consensus 215 ~~~~~l~-------------li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 281 (607)
..+.... .++++...+-.++....+.++-.+.-+.++..+...+.+ +-|=.. .-.+..+...+
T Consensus 146 ~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeL---V~gED~-~~ra~~~tl~e 221 (315)
T PF05992_consen 146 ELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKEL---VYGEDD-ANRAQPPTLRE 221 (315)
T ss_pred HHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHH---HhcCcc-cccCCchhHHH
Confidence 6653332 122222222233334445555545444444444444322 222111 12233344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 282 RYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVA 361 (607)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~ 361 (607)
.|.+.++.+.+............... ..+..+....+.......|.+|.|.+......+.++..+++.+.+.+..+
T Consensus 222 LF~~Vr~Ny~rly~hy~yfni~~~~y----~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~ti 297 (315)
T PF05992_consen 222 LFSNVRRNYFRLYFHYMYFNIARISY----LQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWTTI 297 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 56665655555444443333222222 22222233334456667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 007337 362 MKAAGASRRVFQLL 375 (607)
Q Consensus 362 ~~~~~~~~ri~~~l 375 (607)
.+-....+|+.++-
T Consensus 298 vEL~Si~kRL~~FE 311 (315)
T PF05992_consen 298 VELRSIYKRLRAFE 311 (315)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999874
No 451
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.55 E-value=5.7e-08 Score=94.83 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccC-----CCCCHHHHHHHHHHHHHh
Q 007337 505 QKQRVAIARALMMNPRILLLDEAT-----SALDAESEYLVQDAMDSL 546 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~T-----SaLD~~te~~i~~~l~~~ 546 (607)
|+|++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~ 203 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA 203 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999886
No 452
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.45 E-value=5.9e-07 Score=87.28 Aligned_cols=134 Identities=19% Similarity=0.219 Sum_probs=73.7
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcceEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCcccc
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQ 491 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGKi~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~ 491 (607)
.++-+|++|++++|++++|.||+|+||..+..+=.. ..+.-++-+.-| ++.. .+.- -+..-
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~---~~~la~~G~~vp--a~~~---------~i~~-----~~~i~ 77 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCL---AVIMAQMGMDVP--AKSM---------RLSL-----VDRIF 77 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHH---HHHHHHcCCccC--cccc---------Eecc-----ccEEE
Confidence 468899999999999999999999999111100000 000001111111 1000 0000 01122
Q ss_pred ccccCC------CCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHH-HHHhcC--CCeEEEEccCchhh
Q 007337 492 TFVGER------GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDA-MDSLMK--GRTVLVIAHRLSTV 562 (607)
Q Consensus 492 T~ige~------G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~-l~~~~~--~~TvI~ItHrl~~l 562 (607)
|.+|.. -+.++ -+-+|++-.=....+|+++|||||.++.|+.....+..+ ++.+.+ ++++|++||..+..
T Consensus 78 ~~~~~~d~~~~~~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~ 156 (218)
T cd03286 78 TRIGARDDIMKGESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLC 156 (218)
T ss_pred EecCcccccccCcchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 222211 11111 233444322222368899999999999999865555555 555444 78999999999876
Q ss_pred hhc
Q 007337 563 QSA 565 (607)
Q Consensus 563 ~~a 565 (607)
...
T Consensus 157 ~~~ 159 (218)
T cd03286 157 DEF 159 (218)
T ss_pred HHh
Confidence 543
No 453
>PRK14079 recF recombination protein F; Provisional
Probab=98.44 E-value=4.3e-07 Score=95.04 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=61.1
Q ss_pred CCCChhHHHHHHHHHHHh---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEE
Q 007337 499 VRLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVA 569 (607)
Q Consensus 499 ~~LSGGQkQRialARAll---------~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Ii 569 (607)
.-+|+||+++++||+.|. .+|||++||||+|.||+.....+.+.|... ..+.|.-| +.-..+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t---~~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGT---EAPPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcC---CCCCCCceEE
Confidence 357999999999999998 899999999999999999988888888653 23444433 3456789999
Q ss_pred EEeCCEEeE
Q 007337 570 VVSDGEIVE 578 (607)
Q Consensus 570 vl~~G~Ive 578 (607)
++++|++.-
T Consensus 337 ~~~~~~~~~ 345 (349)
T PRK14079 337 RIEAGVFTP 345 (349)
T ss_pred EEeccEecC
Confidence 999998753
No 454
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.44 E-value=1.6e-06 Score=92.60 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=49.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEccCchhhhhcCEEEEEeCCEEeEecChhH
Q 007337 527 ATSALDAESEYLVQDAMDSLM---KGR-----TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 527 ~TSaLD~~te~~i~~~l~~~~---~~~-----TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~e 584 (607)
.|+++|+..-..+.+.++++. ++. |+++.+|+++. +.||++.++.+|+|+..++-.+
T Consensus 276 ~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 478999999998888888775 355 99999999986 8899999999999999987544
No 455
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.41 E-value=4.6e-06 Score=82.50 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=80.8
Q ss_pred EeeCCCEEEEEcCCCCcc-----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHH
Q 007337 421 KLLSGSKIALVGPSGGGK-----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFI 483 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK-----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i 483 (607)
-+++|..+.|.|++|||| +.|+..+ -+.+++.+-++..+++ ..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e-------------------~~~~~~~~~~~~~g~~-~~ 80 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE-------------------NTSKSYLKQMESVKID-IS 80 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC-------------------CCHHHHHHHHHHCCCC-hh
Confidence 489999999999999999 3333332 2233344434444321 11
Q ss_pred HhCCcccccccc---CCCCCCChhHHHHHHHHHHHhc--CCCEEEEeccCCCCC---HHHHHHHHHHHHHh-cCCCeEEE
Q 007337 484 SNFPEKYQTFVG---ERGVRLSGGQKQRVAIARALMM--NPRILLLDEATSALD---AESEYLVQDAMDSL-MKGRTVLV 554 (607)
Q Consensus 484 ~~lp~G~~T~ig---e~G~~LSGGQkQRialARAll~--~~~IllLDE~TSaLD---~~te~~i~~~l~~~-~~~~TvI~ 554 (607)
+.+..|+-..+. ++-...|.++++.+...+..+. +|+++++||||+.+| .+.-..+.+.++.+ .+++|+++
T Consensus 81 ~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvll 160 (234)
T PRK06067 81 DFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILI 160 (234)
T ss_pred HHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 111122211111 1223457789999999999997 899999999996544 44334444445432 24789999
Q ss_pred EccCchh--------hhhcCEEEEEeC
Q 007337 555 IAHRLST--------VQSADTVAVVSD 573 (607)
Q Consensus 555 ItHrl~~--------l~~aD~Iivl~~ 573 (607)
++|.... ..-+|-++.|+.
T Consensus 161 t~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 161 TLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred EecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 9997653 223577777763
No 456
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.35 E-value=4.8e-07 Score=104.90 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=58.1
Q ss_pred HhcCCCEEEEeccCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEccCchhh----------hhcCEEEEEeCCEEeEecC
Q 007337 515 LMMNPRILLLDEATSAL-DAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV----------QSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 515 ll~~~~IllLDE~TSaL-D~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l----------~~aD~Iivl~~G~Ive~G~ 581 (607)
+..+|+++++|||++.| |+...+.+.+.+++.. .+.+++++||+++.+ ..||.+++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 6889999999988753 478999999999876 4799999999999877664
No 457
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.27 E-value=1.3e-06 Score=106.17 Aligned_cols=62 Identities=26% Similarity=0.317 Sum_probs=55.2
Q ss_pred CCCCCChhHHHHHH----HHHH--------HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch
Q 007337 497 RGVRLSGGQKQRVA----IARA--------LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560 (607)
Q Consensus 497 ~G~~LSGGQkQRia----lARA--------ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~ 560 (607)
+...||||||||++ +|+| +..+|++++|||||++||+.+...+.+.+.++ +.++|++||++-
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 35789999999996 6866 44799999999999999999999999999887 799999999983
No 458
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.26 E-value=2.3e-06 Score=101.06 Aligned_cols=77 Identities=26% Similarity=0.376 Sum_probs=66.6
Q ss_pred CCCCChhHHHHHH------HHHHHhcC--CCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEE
Q 007337 498 GVRLSGGQKQRVA------IARALMMN--PRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTV 568 (607)
Q Consensus 498 G~~LSGGQkQRia------lARAll~~--~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~aD~I 568 (607)
-..|||||+=.++ ||..+-.+ -+.++|||||..||+++-..+.++|..+.. ++++++|||..+....+|.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~~ 892 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADVR 892 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCeE
Confidence 4589999987555 45555577 799999999999999999999999988765 59999999999999999999
Q ss_pred EEEeCC
Q 007337 569 AVVSDG 574 (607)
Q Consensus 569 ivl~~G 574 (607)
+.++..
T Consensus 893 i~V~k~ 898 (908)
T COG0419 893 IRVKKD 898 (908)
T ss_pred EEEEec
Confidence 999764
No 459
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.22 E-value=7.9e-06 Score=75.36 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=45.9
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHH----------HHHHHHHHHHHhc-CCCeEEEEccCchhh
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE----------SEYLVQDAMDSLM-KGRTVLVIAHRLSTV 562 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~----------te~~i~~~l~~~~-~~~TvI~ItHrl~~l 562 (607)
...+.++.++++.+++...+|+++|+||+++-++.. ..+.+.+.+.... .+.|+|+++|.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 344566677889999999999999999999655543 3344444443332 378999999988644
No 460
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.19 E-value=2.5e-06 Score=88.69 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccc-----------cceEEeeCCCEEEEE
Q 007337 363 KAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLK-----------GITLKLLSGSKIALV 431 (607)
Q Consensus 363 ~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~-----------~isl~i~~Ge~vaiV 431 (607)
+...+.+|++++++.++....+ + ....+.++|+||+|.||+. .++|+ |+++.|.+||+++||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~~----~-e~~~~ri~Fe~LTf~YP~e--r~~Le~~~~~~~~R~id~~~pig~Gq~~~Iv 174 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGDD----P-EKAKNRVLFENLTPLYPNE--RLRLETSTEDLSTRVLDLFAPIGKGQRGLIV 174 (415)
T ss_pred eccccHhHHHHHhCCCccCCCC----c-cccCCCeEEEEeeecCCCc--cceeecCccccceeeeeeEEEeCCCCEEEEE
Confidence 3456789999999876543211 1 2234689999999999864 37896 999999999999999
Q ss_pred cCCCCcc
Q 007337 432 GPSGGGK 438 (607)
Q Consensus 432 G~sGsGK 438 (607)
||+||||
T Consensus 175 G~~g~GK 181 (415)
T TIGR00767 175 APPKAGK 181 (415)
T ss_pred CCCCCCh
Confidence 9999999
No 461
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.14 E-value=1.3e-05 Score=85.03 Aligned_cols=162 Identities=20% Similarity=0.178 Sum_probs=98.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcceEEE-----ccCCCcccccHHHHhhcCCCCCCCHHH-
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKISIV-----SQEPVLFNCSIEENIAYGCDGKASSAD- 469 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGKi~~V-----~Q~~~Lf~gTIreNI~~g~~~~~~~~~- 469 (607)
.++-++++-.|... ..+++++ +++.+||+++|+|++|+||-.+. .+.+. .+-| ...|.. ..+-.+
T Consensus 130 ~~~r~~i~~~l~TG--iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI---~~iGer-g~ev~e~ 200 (432)
T PRK06793 130 AFEREEITDVFETG--IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD--INVI---SLVGER-GREVKDF 200 (432)
T ss_pred chheechhhccCCC--CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC--eEEE---EeCCCC-cccHHHH
Confidence 35666666666543 4577774 99999999999999999991110 01110 0100 011211 111111
Q ss_pred HHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh-------cCCCEEEEeccCCCCCHHHHHHHHHH
Q 007337 470 IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM-------MNPRILLLDEATSALDAESEYLVQDA 542 (607)
Q Consensus 470 i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll-------~~~~IllLDE~TSaLD~~te~~i~~~ 542 (607)
+++.+...++. .|.+=-.-.+-|.|+|+|.+.+.+.. .++-++++||+|...|+. +.|...
T Consensus 201 ~~~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~ 268 (432)
T PRK06793 201 IRKELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIA 268 (432)
T ss_pred HHHHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHH
Confidence 12222222211 22333445778999999999999887 678888999999999997 445445
Q ss_pred HHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEeEecC
Q 007337 543 MDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 543 l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 581 (607)
+.+.. .+.|..+-+|-...+++|-+ .++|.|...++
T Consensus 269 ~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 269 VKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred hcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 54443 46788887885556666654 36787765543
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.09 E-value=1.3e-06 Score=86.65 Aligned_cols=124 Identities=19% Similarity=0.289 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCCcc--------eEEEccCCCcc---cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCcccccc
Q 007337 425 GSKIALVGPSGGGK--------ISIVSQEPVLF---NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTF 493 (607)
Q Consensus 425 Ge~vaiVG~sGsGK--------i~~V~Q~~~Lf---~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ 493 (607)
|....|+||+|+|| +++..-.||+- .-+-..++.|..- +.+.+++.+=++..+.+--...+++.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~-Ed~~~~i~~Rl~~i~~~~~~~~~~~rl--- 76 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA-EDPREEIHRRLEAILQHLEPDDAGDRL--- 76 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC-CCCHHHHHHHHHHHHhhcCCcCcccce---
Confidence 67889999999999 33333344432 1122445556543 344445544333322110000111111
Q ss_pred ccCCCCCCChhHHHHHHHHH----------------HHhcCCCEEEEeccCCC------CCHHHHHHHHHHHHHhc--CC
Q 007337 494 VGERGVRLSGGQKQRVAIAR----------------ALMMNPRILLLDEATSA------LDAESEYLVQDAMDSLM--KG 549 (607)
Q Consensus 494 ige~G~~LSGGQkQRialAR----------------All~~~~IllLDE~TSa------LD~~te~~i~~~l~~~~--~~ 549 (607)
-..+|+.|++.+++ +..++|+++|+| |+++ .|+..-..+.+.|.++. .+
T Consensus 77 ------~~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g 149 (239)
T cd01125 77 ------FIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTG 149 (239)
T ss_pred ------EEeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhC
Confidence 11245667766655 345799999999 7764 68887778888887754 37
Q ss_pred CeEEEEccCc
Q 007337 550 RTVLVIAHRL 559 (607)
Q Consensus 550 ~TvI~ItHrl 559 (607)
+|+|+++|..
T Consensus 150 ~avl~v~H~~ 159 (239)
T cd01125 150 AAILLVHHVR 159 (239)
T ss_pred CEEEEEeccC
Confidence 8999999976
No 463
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.08 E-value=1.8e-06 Score=88.87 Aligned_cols=72 Identities=17% Similarity=0.234 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCC-eEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHh
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR-TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~-TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
.=.++++|-.+|+++++|||.+ .+ +.+.++....+. +++..+|-.+.....||+..|-.|++...|...+.+
T Consensus 208 ~~~l~~~Lr~~pd~ii~gE~r~---~e----~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 208 KDLLQSCLRMRPDRIILGELRG---DE----AFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCCeEEEeccCC---HH----HHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 4467788889999999999997 22 233444443454 569999999988889999999999998888877765
No 464
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.96 E-value=1.4e-05 Score=66.25 Aligned_cols=59 Identities=34% Similarity=0.370 Sum_probs=40.0
Q ss_pred CccccccccCCCCCCChhHHHH-H------HHHHHHhc------CCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 007337 487 PEKYQTFVGERGVRLSGGQKQR-V------AIARALMM------NPRILLLDEATSALDAESEYLVQDAMDS 545 (607)
Q Consensus 487 p~G~~T~ige~G~~LSGGQkQR-i------alARAll~------~~~IllLDE~TSaLD~~te~~i~~~l~~ 545 (607)
|+|-+...-..-..+||||||. + |+|-.+-. .+++++|||||+.||+++.+.+.+.+++
T Consensus 19 ~~g~~~~~~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 19 EDGNEVETSRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp TTEECTCEEEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCceeeeeccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 3344433344456899999964 2 23333333 2699999999999999999888887753
No 465
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.94 E-value=6.7e-06 Score=79.08 Aligned_cols=56 Identities=27% Similarity=0.364 Sum_probs=44.4
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 571 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl 571 (607)
++++|+..+|+++++||+. |.++-..+.+ ....+++++.++|..+.....||++.|
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~~G~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALT---AAETGHLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHHcCCEEEEEecCCcHHHHHhHHHhh
Confidence 5889999999999999996 6665444333 334589999999999988888888766
No 466
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.91 E-value=0.00023 Score=63.25 Aligned_cols=66 Identities=36% Similarity=0.426 Sum_probs=50.8
Q ss_pred cccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHH-------HHHHhcCCCeEEEEccC
Q 007337 493 FVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD-------AMDSLMKGRTVLVIAHR 558 (607)
Q Consensus 493 ~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~-------~l~~~~~~~TvI~ItHr 558 (607)
...+......+++.++..+++|-..+++++++||+....+......... .......+..+|.++|.
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 53 IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 3445567788999999999999999999999999999999987765543 22233456777777873
No 467
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.77 E-value=7.2e-05 Score=74.31 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=53.1
Q ss_pred CCCChhHHHHHHHHHHHhcCC---CEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhh
Q 007337 499 VRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTV 562 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~---~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l 562 (607)
..+|.|+||.+.|+-+++..+ .++++|||-++|.|...+.+.+.|....+ +.-+|+.||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999999998766 99999999999999999999999988765 78899999998765
No 468
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.70 E-value=0.16 Score=57.50 Aligned_cols=86 Identities=10% Similarity=0.098 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 67 PDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSAS 146 (607)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (607)
.+.+.....+.+.++..++..+.+.....++..+.+. ... ......+++.+++..++..+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (588)
T PRK13657 12 QYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDA----------ISG-KGDIFPLLAAWAGFGLFNIIAGVLVARHA 80 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcc-cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555555554443221 000 12223334444445566666677777778
Q ss_pred HHHHHHHHHHHHHHHhc
Q 007337 147 ERVVARLRKNLFSHLIN 163 (607)
Q Consensus 147 ~~~~~~lr~~~~~~ll~ 163 (607)
.++..+++..+...+++
T Consensus 81 ~~~~~~~~~~l~~~l~~ 97 (588)
T PRK13657 81 DRLAHRRRLAVLTEYFE 97 (588)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888877665543
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.70 E-value=2.2e-06 Score=93.81 Aligned_cols=65 Identities=17% Similarity=0.239 Sum_probs=45.9
Q ss_pred CCCCChhHHHHHHHH--HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchh--------h-h-h
Q 007337 498 GVRLSGGQKQRVAIA--RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLST--------V-Q-S 564 (607)
Q Consensus 498 G~~LSGGQkQRialA--RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~--------l-~-~ 564 (607)
...+|+||+||+.|+ .++..+|+.+ ....+.+.+.++.+. .++|+|+++|+.+. + . -
T Consensus 113 ~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~l 182 (484)
T TIGR02655 113 NYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFV 182 (484)
T ss_pred HHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEe
Confidence 357899999999999 6666655433 345566666665542 48999999998753 1 2 4
Q ss_pred cCEEEEEe
Q 007337 565 ADTVAVVS 572 (607)
Q Consensus 565 aD~Iivl~ 572 (607)
||-|+.|+
T Consensus 183 aDgVI~L~ 190 (484)
T TIGR02655 183 SDNVVILR 190 (484)
T ss_pred eeeEEEEE
Confidence 79999886
No 470
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.00014 Score=74.94 Aligned_cols=76 Identities=26% Similarity=0.303 Sum_probs=55.8
Q ss_pred CCChhHHHHHHHH---------HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcC---E
Q 007337 500 RLSGGQKQRVAIA---------RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSAD---T 567 (607)
Q Consensus 500 ~LSGGQkQRialA---------RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD---~ 567 (607)
-.|-||+.-+++| +..-.++|||+|||.+|.||..-...+.+.. + ....|.|.-|+....-..-+ +
T Consensus 275 ~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~~-~-~~~Q~fvT~t~~~~~~~~~~~~~~ 352 (363)
T COG1195 275 FASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDTI-E-LGVQVFVTTTDLEDIDDNLDENAQ 352 (363)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhhc-c-cCCeEEEEccCHHHhhhhhhccce
Confidence 4799998887776 3444678999999999999999888888773 2 24456665565544332333 8
Q ss_pred EEEEeCCEEe
Q 007337 568 VAVVSDGEIV 577 (607)
Q Consensus 568 Iivl~~G~Iv 577 (607)
++.+++|+|.
T Consensus 353 ~f~V~~g~i~ 362 (363)
T COG1195 353 MFHVEDGKIT 362 (363)
T ss_pred EEEEecceec
Confidence 9999999874
No 471
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.60 E-value=0.25 Score=57.02 Aligned_cols=41 Identities=15% Similarity=-0.027 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Q 007337 127 IVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIA 167 (607)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ 167 (607)
..++..++..+-.++..+...++..++..++-.++++.-+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~ 232 (694)
T TIGR03375 192 GVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLG 232 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33334455566666666777777777777777766655443
No 472
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.56 E-value=7.9e-05 Score=90.22 Aligned_cols=86 Identities=30% Similarity=0.338 Sum_probs=72.3
Q ss_pred HHhCCccccccccCCCCCCChhHHHHHHHHHHH----hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 007337 483 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL----MMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR 558 (607)
Q Consensus 483 i~~lp~G~~T~ige~G~~LSGGQkQRialARAl----l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHr 558 (607)
|...|.|-... +-..||||||--.|||=-+ |+.+|+++|||.=++||..+..++.+.|.+..++.=-|+||||
T Consensus 1052 i~a~ppgK~~~---~l~~LSGGEKsLtAlAllFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr 1128 (1163)
T COG1196 1052 ISARPPGKKLQ---SLSLLSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHR 1128 (1163)
T ss_pred EEEECCCCCcc---chhhcCCcHHHHHHHHHHHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcC
Confidence 44445554433 5567999999999988654 4788999999999999999999999999999877779999999
Q ss_pred chhhhhcCEEEEE
Q 007337 559 LSTVQSADTVAVV 571 (607)
Q Consensus 559 l~~l~~aD~Iivl 571 (607)
..+...||+++-+
T Consensus 1129 ~~~m~~ad~l~GV 1141 (1163)
T COG1196 1129 KGTMEAADRLVGV 1141 (1163)
T ss_pred hHHHHHHHHHeee
Confidence 9999999998754
No 473
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.53 E-value=0.31 Score=56.43 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007337 132 SVCTALRAWLFSSASERVVARLRKNLFSHLIN 163 (607)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 163 (607)
.+...+..++..........++..++-+++.+
T Consensus 211 ~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~ 242 (711)
T TIGR00958 211 SIASSVSAGLRGGSFNYTMARINLRIREDLFR 242 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555556666666666555544
No 474
>COG3910 Predicted ATPase [General function prediction only]
Probab=97.53 E-value=0.00083 Score=62.07 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=62.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh--hhcCEEEEEeCCEE
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV--QSADTVAVVSDGEI 576 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l--~~aD~Iivl~~G~I 576 (607)
..|-|+-=-=-+.|.+ ++.-|+|||||-|+|-+.-+-.+...|.++. .+.-+|+.||.+-.+ +.| +|+-++.+-|
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A-~I~~~~~~g~ 206 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGA-EIYEISESGI 206 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCc-EEEEEecCCc
Confidence 3488887655556654 6679999999999999998888888888764 467899999998765 445 7888887764
Q ss_pred eEecChhHH
Q 007337 577 VESGTHEEL 585 (607)
Q Consensus 577 ve~G~~~eL 585 (607)
+.-+++|.
T Consensus 207 -~~~~fe~t 214 (233)
T COG3910 207 -EERDFEET 214 (233)
T ss_pred -cccchHHH
Confidence 34455553
No 475
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=8.6e-05 Score=80.01 Aligned_cols=123 Identities=18% Similarity=0.271 Sum_probs=70.2
Q ss_pred ceEEeeCCCEEEEEcCCCCcc-------------------eEEEccCCCcccccHHHHhhcCC-----CCC--CCHHHHH
Q 007337 418 ITLKLLSGSKIALVGPSGGGK-------------------ISIVSQEPVLFNCSIEENIAYGC-----DGK--ASSADIE 471 (607)
Q Consensus 418 isl~i~~Ge~vaiVG~sGsGK-------------------i~~V~Q~~~Lf~gTIreNI~~g~-----~~~--~~~~~i~ 471 (607)
.+..+++|+.+++|||+|+|| +++|++|+ |.-+..||+.++. +.. .+..+.
T Consensus 249 ~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt--~RigA~EQLr~~AeilGVpv~~~~~~~Dl- 325 (484)
T PRK06995 249 EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS--YRIGGHEQLRIYGKILGVPVHAVKDAADL- 325 (484)
T ss_pred ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc--cchhHHHHHHHHHHHhCCCeeccCCchhH-
Confidence 334456789999999999999 88999998 6677889997631 100 111111
Q ss_pred HHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC-----CEEEEeccCCCCCHHHHHHHHHHHHHh
Q 007337 472 NAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP-----RILLLDEATSALDAESEYLVQDAMDSL 546 (607)
Q Consensus 472 ~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~-----~IllLDE~TSaLD~~te~~i~~~l~~~ 546 (607)
. ..+..+.+.+...|..-|.+-. ...+.-+.++++++ .+|+||..+..-|- .+.++..
T Consensus 326 -~-------~aL~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l------~~i~~~f 388 (484)
T PRK06995 326 -R-------LALSELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTL------NEVVQAY 388 (484)
T ss_pred -H-------HHHHhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHH------HHHHHHh
Confidence 1 1234444555556666443211 11233333444444 68999988876332 2222221
Q ss_pred c-CCCeEEEEccCch
Q 007337 547 M-KGRTVLVIAHRLS 560 (607)
Q Consensus 547 ~-~~~TvI~ItHrl~ 560 (607)
. .+.+-+++|+=-+
T Consensus 389 ~~~~~~g~IlTKlDe 403 (484)
T PRK06995 389 RGPGLAGCILTKLDE 403 (484)
T ss_pred ccCCCCEEEEeCCCC
Confidence 1 2567777777443
No 476
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.52 E-value=0.32 Score=56.19 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=19.1
Q ss_pred cccccceEEeeCCCEEEEEcCC---CCcc-eEEEc
Q 007337 413 MVLKGITLKLLSGSKIALVGPS---GGGK-ISIVS 443 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~s---GsGK-i~~V~ 443 (607)
..++|++|+-++++.-.+-+-| -.|+ +++|.
T Consensus 456 i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG 490 (694)
T TIGR01846 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVG 490 (694)
T ss_pred EEEEEEEEEcCCCCccccccceEEECCCCEEEEEC
Confidence 4678999988766544443433 2343 77773
No 477
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.45 E-value=0.00081 Score=70.43 Aligned_cols=156 Identities=25% Similarity=0.294 Sum_probs=105.6
Q ss_pred EEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcceEEEccCCCcccccHHHHhhcCCC-------CC--CCH---HH
Q 007337 402 VWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCD-------GK--ASS---AD 469 (607)
Q Consensus 402 vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGKi~~V~Q~~~Lf~gTIreNI~~g~~-------~~--~~~---~~ 469 (607)
|+|.-|++ -.+.+ +-|++| .+.|||..=-||- |+.+-|..|-. .+ .++ -+
T Consensus 227 ve~~LP~~---g~v~G--MGIp~G-vTlIvGGGyHGKS------------TLL~Ale~GVYnHipGDGRE~VVT~~~avk 288 (448)
T PF09818_consen 227 VEIELPNG---GTVTG--MGIPKG-VTLIVGGGYHGKS------------TLLEALERGVYNHIPGDGREFVVTDPDAVK 288 (448)
T ss_pred EEEECCCC---CEEEE--EeeCCc-EEEEECCCCccHH------------HHHHHHHhcccCCCCCCCceEEEECCCceE
Confidence 66666653 23444 468999 9999999999991 12222221110 00 000 00
Q ss_pred H----HHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC-----CHHHHHHH-
Q 007337 470 I----ENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL-----DAESEYLV- 539 (607)
Q Consensus 470 i----~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL-----D~~te~~i- 539 (607)
+ -...+.+.+..||.+||.|.||. -=--.|=||---|=-.|..||=..+++||+||=|||- |..-++.|
T Consensus 289 irAEDGR~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~ 367 (448)
T PF09818_consen 289 IRAEDGRSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVS 367 (448)
T ss_pred EEecCCceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhc
Confidence 0 12466788999999999999988 3334567999999999999999999999999999997 66656666
Q ss_pred ------------HHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 007337 540 ------------QDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 576 (607)
Q Consensus 540 ------------~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~I 576 (607)
...+.+...-.|++++.--=.++..||+|++||+=+.
T Consensus 368 k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 368 KEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred cCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccc
Confidence 2223233333455555555568999999999998654
No 478
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.33 E-value=0.00012 Score=81.52 Aligned_cols=74 Identities=31% Similarity=0.350 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHHHHh----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 007337 499 VRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 499 ~~LSGGQkQRialARAll----~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~ 572 (607)
..||||||--+|||=-+. -.+|.|||||.-+|||++-...|-..|+++....--|..|-|++.+..||+.+-+.
T Consensus 1096 ~QLSGGQKsvvALaLIFaIQrcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~vAdKfygV~ 1173 (1200)
T KOG0964|consen 1096 EQLSGGQKSVVALALIFAIQRCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLSVADKFYGVK 1173 (1200)
T ss_pred HHhcCchHHHHHHHHHHHHHhcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHHHHHhhhcee
Confidence 369999999999997665 35699999999999999999999999999988877888999999999999998553
No 479
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=97.21 E-value=0.0017 Score=75.76 Aligned_cols=135 Identities=21% Similarity=0.213 Sum_probs=79.8
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcceEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCcccc
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQ 491 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGKi~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~ 491 (607)
..+-+|+++. +.+..+.|.||+.+||-.|+-|-..+ .|.-.+-..-| ++. |.+ .+-+..-
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~---~ilAq~G~~VP--a~~---------a~i-----~~~d~I~ 654 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALI---VLLAQIGSFVP--AES---------ARI-----GIVDRIF 654 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHH---HHHHhcCCcee--ccc---------eEe-----cccCeee
Confidence 3566788887 67789999999999993332221100 01111111111 111 111 1113445
Q ss_pred ccccCCC---CCCChhHHHHHHHHHHHhc--CCCEEEEecc---CCCCCHHH-HHHHHHHHHHhcCCCeEEEEccCchhh
Q 007337 492 TFVGERG---VRLSGGQKQRVAIARALMM--NPRILLLDEA---TSALDAES-EYLVQDAMDSLMKGRTVLVIAHRLSTV 562 (607)
Q Consensus 492 T~ige~G---~~LSGGQkQRialARAll~--~~~IllLDE~---TSaLD~~t-e~~i~~~l~~~~~~~TvI~ItHrl~~l 562 (607)
|.+|... .++|-=......+++++-+ +++++||||+ ||.+|..+ ...+.+.|.+. .+++++++||..+..
T Consensus 655 triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~ 733 (854)
T PRK05399 655 TRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELT 733 (854)
T ss_pred eccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHH
Confidence 6666421 2234444677788888776 8999999999 99999663 33344555442 258999999997766
Q ss_pred hhcCE
Q 007337 563 QSADT 567 (607)
Q Consensus 563 ~~aD~ 567 (607)
..+|+
T Consensus 734 ~l~~~ 738 (854)
T PRK05399 734 ELEEK 738 (854)
T ss_pred HHhhh
Confidence 55554
No 480
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.20 E-value=0.72 Score=53.45 Aligned_cols=154 Identities=10% Similarity=0.083 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhH-HHHH--HHHHHHHHHH
Q 007337 123 SIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDT-QIIK--NAATTNLSEA 199 (607)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~-~~i~--~~~~~~~~~~ 199 (607)
.+++.+++..++..+-.++...+..++..++...+-.++++.-.. .+....-++-+.|+ .++. +.+...+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~----l~~~~~~~~~~g~~~~r~~~~~~i~~~~~~~ 270 (710)
T TIGR03796 195 PLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILR----LPVRFFAQRHAGDIASRVQLNDQVAEFLSGQ 270 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHHcCCcccHHHHHhhhHHHHHHHHHHH
Confidence 333444444555666666666777777777777777766544332 23333333322222 2222 2222222222
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHhccHHH
Q 007337 200 LRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELS-HKTQAAAATAASIAEESFGAIRTVRSFAQEKN 278 (607)
Q Consensus 200 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 278 (607)
+...+.-++.+++.+.+.+.......+++.+..++...+.....+.. +...+.............+.++-++.......
T Consensus 271 ~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~ 350 (710)
T TIGR03796 271 LATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGL 350 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccC
Confidence 22222222222222223333332222223333344444444444443 34444454555555666666666666555544
Q ss_pred HH
Q 007337 279 EI 280 (607)
Q Consensus 279 ~~ 280 (607)
..
T Consensus 351 e~ 352 (710)
T TIGR03796 351 ES 352 (710)
T ss_pred CH
Confidence 33
No 481
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.16 E-value=0.77 Score=53.01 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007337 125 FLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLIN 163 (607)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 163 (607)
++.+++..++..+-.++......++..++...+-.++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 217 (686)
T TIGR03797 179 ALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWD 217 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555666666666667777777766666654
No 482
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.16 E-value=0.0003 Score=73.60 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEE
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVA 569 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Ii 569 (607)
=++++||-.+||++++||+. |+++.....++ ...|.+++...|..+.....||++
T Consensus 186 ~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 186 NALRAALREDPDVILIGEMR---DLETVELALTA---AETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred HHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---HHcCCcEEEEEcCCCHHHHHHHHH
Confidence 35888999999999999997 88877655554 335899999999987766555554
No 483
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.16 E-value=0.79 Score=53.08 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 129 IVGSVCTALRAWLFSSASERVVARLRKNLFSHLI 162 (607)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 162 (607)
++..++..+..++...+..++..++..++-.+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (708)
T TIGR01193 203 IIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYI 236 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555566666666665555554
No 484
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.13 E-value=0.67 Score=51.68 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007337 131 GSVCTALRAWLFSSASERVVARLRKNLFSHLINQE 165 (607)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 165 (607)
..++..+..++......+...++..++-.++++.-
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 96 (529)
T TIGR02868 62 FGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRL 96 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666677777777776666665443
No 485
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.12 E-value=0.74 Score=51.98 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=20.9
Q ss_pred CcccccceEEeeCCCEEEEEcCCC----CcceEEEcc
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSG----GGKISIVSQ 444 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sG----sGKi~~V~Q 444 (607)
.-.++|++|.-++++.-.+-+-|= -.|+++|..
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~ 377 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGR 377 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECC
Confidence 356899999987665555555442 233888743
No 486
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.11 E-value=0.0065 Score=59.75 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=71.5
Q ss_pred EeeCCCEEEEEcCCCCcceEEEccCC--CcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhC-CccccccccC-
Q 007337 421 KLLSGSKIALVGPSGGGKISIVSQEP--VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNF-PEKYQTFVGE- 496 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGKi~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~l-p~G~~T~ige- 496 (607)
-+++|+.+.|.|++||||-.+..|-. .+-+| ++..|... +.+.+++.+-++..+.. ++.+ .+|.-..+.+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g---~~~~~is~-e~~~~~i~~~~~~~g~~--~~~~~~~~~l~i~d~~ 89 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDG---DPVIYVTT-EESRESIIRQAAQFGMD--FEKAIEEGKLVIIDAL 89 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEEc-cCCHHHHHHHHHHhCCC--HHHHhhcCCEEEEEcc
Confidence 58899999999999999911111100 00000 11122211 23344554444444432 1111 1121111111
Q ss_pred ---CC--CCCC-hhHHHHHHHHHHHhc----CCCEEEEeccCCCC--CHHHHHHHHHHHHHhc--CCCeEEEEccCchh-
Q 007337 497 ---RG--VRLS-GGQKQRVAIARALMM----NPRILLLDEATSAL--DAESEYLVQDAMDSLM--KGRTVLVIAHRLST- 561 (607)
Q Consensus 497 ---~G--~~LS-GGQkQRialARAll~----~~~IllLDE~TSaL--D~~te~~i~~~l~~~~--~~~TvI~ItHrl~~- 561 (607)
+. ..+. -...+...-+|.+.+ +++++++|.++.-+ ++...+.+...+.+.+ .++|+|+++|...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~ 169 (229)
T TIGR03881 90 MKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITT 169 (229)
T ss_pred ccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccC
Confidence 00 0111 123344445555543 47889999987754 3333333333343322 48999999995431
Q ss_pred -------hh-hcCEEEEEe
Q 007337 562 -------VQ-SADTVAVVS 572 (607)
Q Consensus 562 -------l~-~aD~Iivl~ 572 (607)
++ -||-|+.|+
T Consensus 170 ~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 170 SQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred CCCcccceEEEEeEEEEEE
Confidence 22 379999887
No 487
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.08 E-value=0.00025 Score=75.41 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=25.2
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.+|++||+++++||.++|+|||||||
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGK 45 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGK 45 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCH
Confidence 57999999999999999999999999
No 488
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=97.08 E-value=0.0026 Score=65.44 Aligned_cols=146 Identities=21% Similarity=0.219 Sum_probs=100.0
Q ss_pred EEeeCCCEEEEEcCCCCcceEEE-----ccCCCcccccHHHHhhcCCCC--CCCHHHHHHH-------HHHcCchHHHHh
Q 007337 420 LKLLSGSKIALVGPSGGGKISIV-----SQEPVLFNCSIEENIAYGCDG--KASSADIENA-------AKMANAHDFISN 485 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGKi~~V-----~Q~~~Lf~gTIreNI~~g~~~--~~~~~~i~~a-------l~~a~l~~~i~~ 485 (607)
+-|++| +..|+|++=-||..++ .|+.+ ..|+-. -.++....+| ..-..+..||+.
T Consensus 238 mgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnH----------ipGDGRE~vVTd~~lakaeae~gr~vsg~D~SlFi~~ 306 (554)
T COG3044 238 MGIPQG-ITLITGGNFHGKTTLLTAIERGVDNH----------IPGDGRERVVTDVKLAKAEAEEGRCVSGLDLSLFINH 306 (554)
T ss_pred cCCCcc-eEEEecCCccchhHHHHHHHhccccc----------CCCCCceEEEehhhhhhhhcccceeeeccchHHHHHh
Confidence 568899 9999999999993322 12222 223211 1233322221 122346689999
Q ss_pred CCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCH-----H-----HHH---HHHHHHHHhcCC-Ce
Q 007337 486 FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA-----E-----SEY---LVQDAMDSLMKG-RT 551 (607)
Q Consensus 486 lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~-----~-----te~---~i~~~l~~~~~~-~T 551 (607)
||.|-+|+---.|. =||--+|=-.|=||+=..++++++||=|||..- . .++ -+.+.+.++..+ -+
T Consensus 307 LPggkdTp~fvtgd-ASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~gd~iS 385 (554)
T COG3044 307 LPGGKDTPDFVTGD-ASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRGDLIS 385 (554)
T ss_pred CCCCCCCcccccCC-CCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhccCceE
Confidence 99999998765553 599999999999999999999999999999743 1 122 233334444333 68
Q ss_pred EEEEccCch-hhhhcCEEEEEeCCEEe
Q 007337 552 VLVIAHRLS-TVQSADTVAVVSDGEIV 577 (607)
Q Consensus 552 vI~ItHrl~-~l~~aD~Iivl~~G~Iv 577 (607)
+|.||--+. .+..+|+++|||+-|-+
T Consensus 386 ~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 386 TIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred EEEEeccchhhhhhcceEEEecccCcc
Confidence 888888876 56789999999987655
No 489
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.99 E-value=0.00067 Score=65.17 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=58.1
Q ss_pred EEEEEcCCCCcc---------------eEEEccCCCcccccHHHHhh-----cCCCCCCCHHHHHHHHHHcCchHHHHhC
Q 007337 427 KIALVGPSGGGK---------------ISIVSQEPVLFNCSIEENIA-----YGCDGKASSADIENAAKMANAHDFISNF 486 (607)
Q Consensus 427 ~vaiVG~sGsGK---------------i~~V~Q~~~Lf~gTIreNI~-----~g~~~~~~~~~i~~al~~a~l~~~i~~l 486 (607)
.++|+|+||||| +.++++|.+...-+.+++.. +..|...+.+.+.+.++...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-------- 72 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLK-------- 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHH--------
Confidence 489999999999 68899998775544444332 22222233333333333222
Q ss_pred CccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHH
Q 007337 487 PEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 534 (607)
Q Consensus 487 p~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~ 534 (607)
.|- .+.-..-+.|.|++++-.+ ..++++++|+|.|++..++.
T Consensus 73 -~~~--~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 73 -NGK--SVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred -CCC--CEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 221 1222334677777776554 56889999999999998763
No 490
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.97 E-value=1 Score=50.95 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007337 125 FLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLIN 163 (607)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 163 (607)
++..++..++.++..++..+...++..+++..+-.++++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 97 (585)
T TIGR01192 59 LALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFG 97 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556677777888888888888888888777764
No 491
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.95 E-value=0.00061 Score=64.90 Aligned_cols=69 Identities=19% Similarity=0.143 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCch---hhhhcCEEEEEeCC
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLS---TVQSADTVAVVSDG 574 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~---~l~~aD~Iivl~~G 574 (607)
|+-+|-.||.++..||+.+..+| +-+||...+.+.+.+.+... ++++|+-+|.+. .-..||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 77899999999999999988777 77999999999988877643 369999999984 34679999999875
No 492
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.95 E-value=0.98 Score=50.56 Aligned_cols=28 Identities=21% Similarity=0.061 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 134 CTALRAWLFSSASERVVARLRKNLFSHL 161 (607)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~lr~~~~~~l 161 (607)
+..+..++......++..++...+-.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 85 (544)
T TIGR01842 58 FLGLLDALRSFVLVRIGEKLDGALNQPI 85 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444443333
No 493
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.87 E-value=0.007 Score=54.01 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc------CCCeEEEEccCch
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM------KGRTVLVIAHRLS 560 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~------~~~TvI~ItHrl~ 560 (607)
++.....++...++.++++||+-.. ++.....+.+.+.... ++.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999998765 5556666777776653 4668888888654
No 494
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=96.84 E-value=1.2 Score=50.06 Aligned_cols=121 Identities=9% Similarity=0.058 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhH-HHHH---HHHHHHHHHHH
Q 007337 125 FLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDT-QIIK---NAATTNLSEAL 200 (607)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~-~~i~---~~~~~~~~~~~ 200 (607)
.+++++..++..+-.+.......+...++...+-+++++.-.. .+...+-+.=..|. .++. +.+...+...+
T Consensus 57 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~----~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~ 132 (571)
T TIGR02203 57 PLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLG----LPVSFFDRQPTGTLLSRITFDSEQVASAATDAF 132 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555566666666666666666666666665433222 23333322211111 1221 11222333333
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 201 RNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKT 249 (607)
Q Consensus 201 ~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~ 249 (607)
..++..++.+++.+.+.+.+.....+++.+..++..++.....+..++.
T Consensus 133 ~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~ 181 (571)
T TIGR02203 133 IVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRI 181 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555554444444444455555555444444333
No 495
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=96.79 E-value=1.3 Score=49.80 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007337 132 SVCTALRAWLFSSASERVVARLRKNLFSHLIN 163 (607)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 163 (607)
.++..+..+.......++..++...+-.++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 99 (576)
T TIGR02204 68 ALVLALGTAARFYLVTWLGERVVADIRRAVFA 99 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444544444555555555555444443
No 496
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.00097 Score=74.92 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=67.9
Q ss_pred cccccccCCC------CCCChhHHHHHHHHHH----HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 007337 489 KYQTFVGERG------VRLSGGQKQRVAIARA----LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR 558 (607)
Q Consensus 489 G~~T~ige~G------~~LSGGQkQRialARA----ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHr 558 (607)
||+-.|+=+| ..||||||-.+||+=- .++.+|+|||||.-+|||---.+-|-+-|+..+++.--|+|+=.
T Consensus 1065 GLEvkV~~G~iWKeSL~ELSGGQRSLVALsLIlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSLK 1144 (1174)
T KOG0933|consen 1065 GLEVKVKFGGIWKESLSELSGGQRSLVALSLILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSLK 1144 (1174)
T ss_pred ceEEEEEeCccHHHHHHHhcCchHHHHHHHHHHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEch
Confidence 4555554333 5799999999997543 35899999999999999999888889999999999999999988
Q ss_pred chhhhhcCEEEE
Q 007337 559 LSTVQSADTVAV 570 (607)
Q Consensus 559 l~~l~~aD~Iiv 570 (607)
--...+||+++-
T Consensus 1145 eGMF~NANvLFr 1156 (1174)
T KOG0933|consen 1145 EGMFNNANVLFR 1156 (1174)
T ss_pred hhccccchhhhe
Confidence 888888887764
No 497
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=96.78 E-value=1.5 Score=50.25 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccC-chHHHHHHHHhHHHHHHHHHHHHHHH
Q 007337 121 ILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTR-TGELLSRLSEDTQIIKNAATTNLSEA 199 (607)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~-~G~i~~r~~~d~~~i~~~~~~~~~~~ 199 (607)
++.++++.++..++..+..|+..++..+++.++...+.++.++. ..+++-.. .+..-+.++.=++.+..+ ...+...
T Consensus 138 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~-~~~~~~~~~d~~~g~~~srlt~Dv~~i-~~~~~~~ 215 (659)
T TIGR00954 138 LFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSG-FTFYKVSNLDSRIQNPDQLLTQDVEKF-CDSVVEL 215 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CceEEeccCCCCCCCccccHHHHHHHH-HHHHHHH
Confidence 44444555556666677777766666666666666666666553 33333222 223444555545555444 4445555
Q ss_pred HHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 200 LRNLSTAFIGLGFMFATSWK-LTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAAS 258 (607)
Q Consensus 200 ~~~~~~~i~~~~~l~~~~~~-l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (607)
+..++..++.++.....-+. +.....+++.+++++...+.+...+...+......+..+
T Consensus 216 ~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 275 (659)
T TIGR00954 216 YSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEG 275 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 55555655555544444443 555555555566666666666655544444444333333
No 498
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=96.68 E-value=0.78 Score=45.62 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=46.5
Q ss_pred HHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 325 NLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 325 ~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
.....|++|.|.+..+...+.++..+++-+.+.++.+.+...-.+|+.++-..
T Consensus 339 PsivAgkitlG~~~QI~n~FgqVr~SfqylinsWTTIveL~SIyKRLraFE~~ 391 (405)
T COG1133 339 PSIVAGKITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRAFEAA 391 (405)
T ss_pred hHHHhchhhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 34456889999999999999999999999999999999999999999988543
No 499
>PRK09183 transposase/IS protein; Provisional
Probab=96.65 E-value=0.0073 Score=60.55 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=29.8
Q ss_pred hcCCCEEEEeccCC-CCCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 007337 516 MMNPRILLLDEATS-ALDAESEYLVQDAMDSLMKGRTVLVIAHR 558 (607)
Q Consensus 516 l~~~~IllLDE~TS-aLD~~te~~i~~~l~~~~~~~TvI~ItHr 558 (607)
+.+++++++||.-. ..|.+....+.+.+......+.+|+.|+.
T Consensus 162 ~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~ 205 (259)
T PRK09183 162 VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNL 205 (259)
T ss_pred hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCC
Confidence 57899999999953 46777766788888665544554444444
No 500
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.60 E-value=0.0037 Score=71.28 Aligned_cols=60 Identities=20% Similarity=0.282 Sum_probs=42.2
Q ss_pred CCCChhHHHHHH------HHHHHhcCCCEEEEeccCCCCCHHHHHHHH-HHHHHhcCCCeEEEEccCchh
Q 007337 499 VRLSGGQKQRVA------IARALMMNPRILLLDEATSALDAESEYLVQ-DAMDSLMKGRTVLVIAHRLST 561 (607)
Q Consensus 499 ~~LSGGQkQRia------lARAll~~~~IllLDE~TSaLD~~te~~i~-~~l~~~~~~~TvI~ItHrl~~ 561 (607)
..|||||||-++ |+++.-.+.|++ +|||++.||++....+. +.+... ..-||++||.-+.
T Consensus 550 ~~lS~Ge~~~~~la~~~al~~~~~~~~p~i-iD~p~~~lD~~~r~~l~~~~~~~~--~~QvIils~d~e~ 616 (650)
T TIGR03185 550 ERLSAGERQILAIALLWGLAKVSGRRLPVI-IDTPLGRLDSSHRENLVVNYFPKA--SHQVLLLSTDEEV 616 (650)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCEE-EcCCccccChHHHHHHHHHHhhcc--CCeEEEEechHhh
Confidence 579999999874 334333567884 69999999997655554 455443 4678888887654
Done!