Query 007337
Match_columns 607
No_of_seqs 292 out of 2193
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 23:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 3.5E-96 1E-100 881.6 73.4 546 54-600 58-654 (1321)
2 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-90 4E-95 772.9 70.3 532 61-602 14-581 (587)
3 4f4c_A Multidrug resistance pr 100.0 9.9E-93 3.4E-97 851.7 52.8 542 56-603 738-1320(1321)
4 4a82_A Cystic fibrosis transme 100.0 7.3E-90 2.5E-94 766.3 67.0 539 58-599 2-576 (578)
5 3qf4_B Uncharacterized ABC tra 100.0 6E-90 2E-94 769.3 64.3 537 55-603 22-594 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 7.1E-87 2.4E-91 743.3 74.3 533 56-600 11-580 (582)
7 2yl4_A ATP-binding cassette SU 100.0 1.2E-86 3.9E-91 743.5 73.0 542 57-603 6-587 (595)
8 3b60_A Lipid A export ATP-bind 100.0 8E-87 2.7E-91 743.0 71.3 533 56-600 11-580 (582)
9 3g5u_A MCG1178, multidrug resi 100.0 2.3E-85 7.8E-90 786.1 58.4 547 54-601 31-627 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 2.5E-79 8.5E-84 733.9 57.6 543 56-602 691-1273(1284)
11 3nh6_A ATP-binding cassette SU 100.0 5.6E-61 1.9E-65 488.0 24.1 242 358-602 15-292 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 4.8E-49 1.7E-53 390.5 27.3 203 395-599 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 7.6E-49 2.6E-53 392.1 26.6 206 395-601 16-256 (260)
14 2ixe_A Antigen peptide transpo 100.0 1.6E-47 5.6E-52 384.5 25.8 206 395-601 15-259 (271)
15 1mv5_A LMRA, multidrug resista 100.0 1.9E-48 6.4E-53 386.0 17.9 201 397-600 2-239 (243)
16 2cbz_A Multidrug resistance-as 100.0 3.8E-47 1.3E-51 374.8 23.7 203 396-601 3-231 (237)
17 2pze_A Cystic fibrosis transme 100.0 7.2E-47 2.5E-51 371.0 24.1 199 395-596 5-227 (229)
18 3gd7_A Fusion complex of cysti 100.0 3.2E-46 1.1E-50 391.2 23.6 194 393-589 16-244 (390)
19 2bbs_A Cystic fibrosis transme 100.0 2E-43 6.8E-48 357.2 21.7 193 395-595 39-255 (290)
20 3tui_C Methionine import ATP-b 100.0 4.2E-42 1.4E-46 354.8 18.3 183 395-588 23-254 (366)
21 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-41 3.9E-46 341.7 19.0 182 396-590 7-236 (275)
22 3tif_A Uncharacterized ABC tra 100.0 6.1E-42 2.1E-46 337.1 16.0 180 397-586 2-233 (235)
23 1ji0_A ABC transporter; ATP bi 100.0 6.5E-41 2.2E-45 331.0 20.3 184 396-588 6-229 (240)
24 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-40 4.2E-45 343.9 18.9 180 396-589 4-230 (359)
25 2yz2_A Putative ABC transporte 100.0 5.8E-40 2E-44 329.1 21.7 182 397-589 3-229 (266)
26 3rlf_A Maltose/maltodextrin im 100.0 1.8E-40 6.1E-45 344.9 18.4 180 396-589 3-225 (381)
27 1vpl_A ABC transporter, ATP-bi 100.0 4.5E-40 1.5E-44 327.2 20.2 180 395-588 14-236 (256)
28 2olj_A Amino acid ABC transpor 100.0 3.3E-40 1.1E-44 329.2 18.7 180 396-589 24-250 (263)
29 4g1u_C Hemin import ATP-bindin 100.0 3.5E-40 1.2E-44 330.1 18.3 179 396-588 11-238 (266)
30 2nq2_C Hypothetical ABC transp 100.0 4.6E-40 1.6E-44 326.9 17.8 179 396-588 4-218 (253)
31 2pcj_A ABC transporter, lipopr 100.0 5.2E-40 1.8E-44 321.1 16.6 173 396-582 4-223 (224)
32 2yyz_A Sugar ABC transporter, 100.0 1.6E-39 5.3E-44 336.8 20.5 180 396-589 3-225 (359)
33 1z47_A CYSA, putative ABC-tran 100.0 1.3E-39 4.3E-44 336.7 19.3 182 395-589 13-237 (355)
34 1g6h_A High-affinity branched- 100.0 1.4E-39 4.7E-44 324.9 19.0 175 396-584 7-239 (257)
35 2it1_A 362AA long hypothetical 100.0 1E-39 3.6E-44 338.5 18.2 180 396-589 3-225 (362)
36 2onk_A Molybdate/tungstate ABC 100.0 2.4E-39 8.2E-44 319.0 18.7 175 397-589 2-218 (240)
37 1b0u_A Histidine permease; ABC 100.0 2.6E-39 8.9E-44 323.5 18.7 180 396-589 6-244 (262)
38 1v43_A Sugar-binding transport 100.0 3.3E-39 1.1E-43 336.0 20.1 180 396-589 11-233 (372)
39 3d31_A Sulfate/molybdate ABC t 100.0 2.6E-39 9E-44 334.1 18.2 178 397-589 2-219 (348)
40 1oxx_K GLCV, glucose, ABC tran 100.0 3.3E-39 1.1E-43 334.7 18.8 180 396-589 3-232 (353)
41 2qi9_C Vitamin B12 import ATP- 100.0 9.3E-39 3.2E-43 316.4 20.1 174 396-587 4-222 (249)
42 2ihy_A ABC transporter, ATP-bi 100.0 4.7E-39 1.6E-43 323.9 15.5 179 396-588 21-253 (279)
43 1g29_1 MALK, maltose transport 100.0 1.1E-38 3.8E-43 332.7 18.6 180 396-589 3-231 (372)
44 2d2e_A SUFC protein; ABC-ATPas 100.0 7.6E-39 2.6E-43 318.2 16.3 175 396-584 3-230 (250)
45 2zu0_C Probable ATP-dependent 100.0 6E-38 2.1E-42 314.4 20.2 178 396-587 20-254 (267)
46 2pjz_A Hypothetical protein ST 100.0 1.2E-37 4E-42 310.8 17.8 177 397-588 2-216 (263)
47 1sgw_A Putative ABC transporte 100.0 2.2E-36 7.5E-41 292.2 13.0 166 395-576 9-210 (214)
48 2v9p_A Replication protein E1; 100.0 7E-40 2.4E-44 331.6 -19.6 224 329-601 37-277 (305)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.1E-31 1E-35 291.0 13.4 177 396-587 287-493 (538)
50 2iw3_A Elongation factor 3A; a 100.0 1E-29 3.5E-34 290.6 26.3 176 395-588 434-636 (986)
51 3bk7_A ABC transporter ATP-bin 100.0 4.3E-31 1.5E-35 292.6 14.1 177 396-587 357-563 (607)
52 3pih_A Uvrabc system protein A 100.0 2.2E-30 7.5E-35 296.1 18.7 134 451-595 767-910 (916)
53 3ozx_A RNAse L inhibitor; ATP 100.0 1.6E-30 5.6E-35 284.3 15.3 177 395-586 268-476 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 3.3E-30 1.1E-34 291.6 17.2 131 451-592 505-645 (670)
55 3j16_B RLI1P; ribosome recycli 100.0 3.5E-30 1.2E-34 284.7 13.6 177 399-588 349-560 (608)
56 2iw3_A Elongation factor 3A; a 100.0 7.3E-30 2.5E-34 291.8 15.8 174 396-581 671-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.5E-29 5.2E-34 286.2 11.7 96 496-591 198-302 (670)
58 3bk7_A ABC transporter ATP-bin 100.0 2.8E-28 9.7E-33 270.1 15.0 161 396-574 83-304 (607)
59 1yqt_A RNAse L inhibitor; ATP- 99.9 4.7E-28 1.6E-32 265.7 13.1 160 397-574 21-234 (538)
60 2vf7_A UVRA2, excinuclease ABC 99.9 2E-26 6.9E-31 261.4 18.3 100 493-592 723-832 (842)
61 2r6f_A Excinuclease ABC subuni 99.9 6.5E-26 2.2E-30 257.1 19.1 105 489-593 833-948 (972)
62 2ygr_A Uvrabc system protein A 99.9 1.1E-25 3.6E-30 256.4 20.1 112 482-595 846-968 (993)
63 3j16_B RLI1P; ribosome recycli 99.9 4.5E-26 1.5E-30 252.0 14.3 160 401-576 82-299 (608)
64 3ozx_A RNAse L inhibitor; ATP 99.9 4.6E-26 1.6E-30 249.2 11.9 158 400-575 3-214 (538)
65 4aby_A DNA repair protein RECN 99.9 1.2E-24 3.9E-29 232.9 13.2 80 501-580 296-381 (415)
66 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.5E-27 8.5E-32 254.1 -13.3 165 396-587 118-338 (460)
67 4gp7_A Metallophosphoesterase; 99.9 8.6E-24 3E-28 197.6 2.6 146 417-568 1-168 (171)
68 1e69_A Chromosome segregation 99.9 3E-22 1E-26 206.5 14.0 100 485-584 198-310 (322)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.7E-22 2.3E-26 207.0 13.0 82 497-578 276-364 (365)
70 2vf7_A UVRA2, excinuclease ABC 99.8 2.1E-21 7.1E-26 220.4 11.9 96 494-589 373-477 (842)
71 3b85_A Phosphate starvation-in 99.8 7.3E-22 2.5E-26 189.9 -1.1 65 504-576 108-172 (208)
72 1z6g_A Guanylate kinase; struc 99.8 7.7E-23 2.6E-27 198.9 -11.6 134 413-573 11-193 (218)
73 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 4E-19 1.4E-23 160.9 11.1 88 489-576 41-142 (148)
74 1ye8_A Protein THEP1, hypothet 99.8 1.3E-20 4.6E-25 176.7 0.2 81 492-578 68-159 (178)
75 2ygr_A Uvrabc system protein A 99.8 8.9E-19 3E-23 199.7 14.4 138 446-588 464-618 (993)
76 2r6f_A Excinuclease ABC subuni 99.8 4.5E-19 1.5E-23 201.4 11.7 136 448-588 449-601 (972)
77 2pt7_A CAG-ALFA; ATPase, prote 99.8 1.4E-22 4.7E-27 209.0 -18.4 199 331-575 75-291 (330)
78 3pih_A Uvrabc system protein A 99.8 1.8E-18 6.1E-23 198.0 11.9 96 494-589 458-562 (916)
79 3kta_B Chromosome segregation 99.7 1.1E-17 3.7E-22 155.4 10.9 79 498-576 62-146 (173)
80 3aez_A Pantothenate kinase; tr 99.7 3.1E-20 1.1E-24 189.6 -9.4 156 394-574 41-245 (312)
81 2dpy_A FLII, flagellum-specifi 99.7 8.5E-20 2.9E-24 194.7 -7.4 159 395-587 130-344 (438)
82 1tq4_A IIGP1, interferon-induc 99.7 4.3E-19 1.5E-23 186.9 -6.3 141 412-569 36-248 (413)
83 2o5v_A DNA replication and rep 99.6 3.4E-16 1.2E-20 162.3 9.9 82 500-586 265-355 (359)
84 2o8b_B DNA mismatch repair pro 99.6 3.8E-16 1.3E-20 181.8 10.7 155 395-582 749-937 (1022)
85 2ewv_A Twitching motility prot 99.6 6.7E-19 2.3E-23 184.4 -14.3 143 413-561 126-353 (372)
86 3asz_A Uridine kinase; cytidin 99.6 2.7E-18 9.3E-23 165.7 -9.6 131 422-559 3-161 (211)
87 1tf7_A KAIC; homohexamer, hexa 99.6 7.7E-16 2.6E-20 169.1 7.9 152 397-575 258-444 (525)
88 4ad8_A DNA repair protein RECN 99.6 1.2E-15 3.9E-20 167.4 8.8 76 499-574 395-473 (517)
89 3thx_A DNA mismatch repair pro 99.6 2.1E-15 7.1E-20 173.5 10.9 156 395-585 630-811 (934)
90 1znw_A Guanylate kinase, GMP k 99.6 5.2E-18 1.8E-22 163.4 -9.9 145 412-573 9-203 (207)
91 3b9q_A Chloroplast SRP recepto 99.6 2.2E-16 7.6E-21 160.3 -0.4 138 416-576 91-284 (302)
92 2eyu_A Twitching motility prot 99.6 3.5E-18 1.2E-22 170.2 -14.0 151 397-560 6-241 (261)
93 1ewq_A DNA mismatch repair pro 99.6 2.7E-15 9.1E-20 169.7 7.4 137 394-565 548-704 (765)
94 3sop_A Neuronal-specific septi 99.5 1.2E-16 4.1E-21 159.8 -4.3 114 427-563 4-154 (270)
95 2obl_A ESCN; ATPase, hydrolase 99.5 4.5E-16 1.5E-20 161.0 -2.2 171 396-586 45-254 (347)
96 2og2_A Putative signal recogni 99.5 8.3E-16 2.8E-20 159.0 -0.3 137 417-576 149-341 (359)
97 1odf_A YGR205W, hypothetical 3 99.5 9.4E-17 3.2E-21 162.1 -7.4 111 423-535 29-169 (290)
98 3qkt_A DNA double-strand break 99.5 2.8E-14 9.6E-19 147.8 10.6 78 498-575 246-332 (339)
99 1cr0_A DNA primase/helicase; R 99.5 6.4E-14 2.2E-18 142.4 12.4 151 413-576 23-237 (296)
100 3auy_A DNA double-strand break 99.5 4.6E-14 1.6E-18 148.1 10.4 75 499-573 279-360 (371)
101 2jeo_A Uridine-cytidine kinase 99.5 8.6E-15 2.9E-19 144.6 2.2 146 411-587 11-187 (245)
102 2i3b_A HCR-ntpase, human cance 99.5 1.7E-15 5.9E-20 143.0 -3.4 85 492-580 75-169 (189)
103 1w1w_A Structural maintenance 99.5 1.5E-13 5.1E-18 147.2 10.8 75 498-572 331-410 (430)
104 1lvg_A Guanylate kinase, GMP k 99.4 9.7E-17 3.3E-21 153.3 -14.7 137 423-587 2-183 (198)
105 3thx_B DNA mismatch repair pro 99.4 8.1E-14 2.8E-18 159.9 6.7 149 395-568 639-805 (918)
106 2f1r_A Molybdopterin-guanine d 99.4 2.2E-15 7.6E-20 139.8 -6.4 43 476-522 82-125 (171)
107 1tf7_A KAIC; homohexamer, hexa 99.4 5.3E-15 1.8E-19 162.4 -5.5 151 412-574 25-210 (525)
108 1pzn_A RAD51, DNA repair and r 99.4 2.6E-14 8.9E-19 148.3 -0.6 164 414-586 119-314 (349)
109 1lw7_A Transcriptional regulat 99.3 2.3E-14 7.8E-19 150.1 -3.8 114 414-528 157-329 (365)
110 2qag_C Septin-7; cell cycle, c 99.3 6.8E-14 2.3E-18 147.8 -1.8 134 395-562 10-180 (418)
111 4a74_A DNA repair and recombin 99.3 5.3E-13 1.8E-17 130.0 3.9 141 421-574 21-200 (231)
112 3jvv_A Twitching mobility prot 99.3 5E-13 1.7E-17 138.5 3.8 137 400-574 92-246 (356)
113 2ehv_A Hypothetical protein PH 99.3 1E-13 3.4E-18 137.0 -1.5 71 503-573 120-207 (251)
114 2w0m_A SSO2452; RECA, SSPF, un 99.3 6.2E-12 2.1E-16 122.4 11.2 150 412-574 9-192 (235)
115 2gza_A Type IV secretion syste 99.3 2.8E-16 9.7E-21 164.0 -22.2 189 320-514 52-301 (361)
116 1wb9_A DNA mismatch repair pro 99.3 8.9E-13 3.1E-17 150.0 4.5 152 395-579 576-750 (800)
117 1nlf_A Regulatory protein REPA 99.3 9.5E-12 3.2E-16 125.2 10.1 66 494-562 112-184 (279)
118 2cvh_A DNA repair and recombin 99.3 9.5E-12 3.2E-16 120.1 9.0 143 413-574 7-185 (220)
119 1pui_A ENGB, probable GTP-bind 99.2 3.3E-13 1.1E-17 129.5 -2.8 55 494-548 143-198 (210)
120 3c8u_A Fructokinase; YP_612366 99.2 1.1E-14 3.7E-19 140.2 -15.8 102 422-528 19-140 (208)
121 2qnr_A Septin-2, protein NEDD5 99.1 1.1E-12 3.7E-17 133.4 -4.8 131 400-561 2-169 (301)
122 2qag_B Septin-6, protein NEDD5 99.1 1.8E-11 6E-16 128.8 2.3 151 396-557 16-217 (427)
123 3szr_A Interferon-induced GTP- 99.1 1.5E-12 5E-17 144.9 -6.8 154 396-586 10-236 (608)
124 1rj9_A FTSY, signal recognitio 99.0 6.7E-11 2.3E-15 120.0 1.5 55 501-562 203-261 (304)
125 1s96_A Guanylate kinase, GMP k 98.9 1.3E-10 4.5E-15 112.2 -0.2 60 512-587 101-160 (219)
126 1n0w_A DNA repair protein RAD5 98.8 4.4E-09 1.5E-13 102.8 6.8 144 421-574 20-209 (243)
127 1zp6_A Hypothetical protein AT 98.8 1.2E-10 4E-15 109.9 -4.5 54 497-558 106-159 (191)
128 1nij_A Hypothetical protein YJ 98.6 1.2E-09 4.2E-14 111.8 -5.8 50 500-560 141-190 (318)
129 2bdt_A BH3686; alpha-beta prot 98.6 9.9E-12 3.4E-16 117.3 -19.9 78 502-585 96-182 (189)
130 3ec2_A DNA replication protein 98.5 1.3E-07 4.3E-12 88.1 7.7 45 516-560 98-144 (180)
131 3lda_A DNA repair protein RAD5 98.5 8.5E-08 2.9E-12 100.6 7.1 145 421-575 174-364 (400)
132 2kjq_A DNAA-related protein; s 98.5 1.5E-07 5.1E-12 84.9 7.6 44 514-558 79-124 (149)
133 1sxj_E Activator 1 40 kDa subu 98.4 1E-07 3.5E-12 98.7 4.7 46 515-561 131-176 (354)
134 2qm8_A GTPase/ATPase; G protei 98.4 3.8E-09 1.3E-13 108.9 -6.6 45 499-547 209-259 (337)
135 1udx_A The GTP-binding protein 98.4 2.2E-08 7.4E-13 105.6 -1.1 130 415-558 147-307 (416)
136 2bbw_A Adenylate kinase 4, AK4 98.4 2.1E-08 7.3E-13 98.5 -1.4 64 498-573 150-218 (246)
137 2oap_1 GSPE-2, type II secreti 98.4 6.4E-10 2.2E-14 120.6 -14.6 141 413-566 248-458 (511)
138 2yhs_A FTSY, cell division pro 98.4 3.7E-08 1.3E-12 104.9 -1.1 23 416-438 284-306 (503)
139 1ls1_A Signal recognition part 98.3 7.8E-07 2.7E-11 89.7 7.6 124 397-555 77-218 (295)
140 1p9r_A General secretion pathw 98.3 2.4E-09 8.1E-14 113.1 -11.7 24 498-523 291-314 (418)
141 2rcn_A Probable GTPase ENGC; Y 98.2 5.2E-08 1.8E-12 100.3 -4.1 89 414-515 205-328 (358)
142 2px0_A Flagellar biosynthesis 98.2 2.1E-06 7.1E-11 86.5 7.5 120 423-578 103-246 (296)
143 1vma_A Cell division protein F 98.2 2.9E-06 1E-10 85.7 8.5 81 418-529 97-197 (306)
144 2dr3_A UPF0273 protein PH0284; 98.2 1.1E-05 3.8E-10 78.5 11.9 70 504-573 112-196 (247)
145 2eyu_A Twitching motility prot 98.2 5.8E-07 2E-11 89.0 2.6 59 508-572 88-146 (261)
146 3e70_C DPA, signal recognition 98.1 2.4E-06 8.3E-11 87.2 5.4 66 507-577 232-307 (328)
147 2r6a_A DNAB helicase, replicat 98.1 2E-05 6.7E-10 84.5 12.7 152 413-576 191-401 (454)
148 2zr9_A Protein RECA, recombina 98.1 1.5E-05 5E-10 82.3 11.2 76 506-581 125-237 (349)
149 2x8a_A Nuclear valosin-contain 98.0 1E-08 3.6E-13 102.5 -14.4 43 500-544 137-191 (274)
150 3qf4_A ABC transporter, ATP-bi 97.9 0.015 5.1E-07 64.1 33.0 32 128-159 77-108 (587)
151 3lnc_A Guanylate kinase, GMP k 97.9 1.8E-08 6E-13 98.1 -14.2 26 413-438 15-40 (231)
152 1htw_A HI0065; nucleotide-bind 97.8 1.7E-06 5.9E-11 78.6 -1.4 57 400-459 11-97 (158)
153 2ce7_A Cell division protein F 97.8 3.4E-05 1.2E-09 82.6 8.1 69 503-571 93-183 (476)
154 1cke_A CK, MSSA, protein (cyti 97.8 2.1E-06 7.3E-11 82.7 -1.4 58 467-529 93-151 (227)
155 2ius_A DNA translocase FTSK; n 97.7 2.5E-06 8.6E-11 91.8 -1.5 60 500-560 268-343 (512)
156 2qt1_A Nicotinamide riboside k 97.6 4.8E-06 1.6E-10 79.2 -1.6 40 419-461 15-67 (207)
157 3tr0_A Guanylate kinase, GMP k 97.6 2.9E-05 1E-09 73.3 3.0 122 419-545 1-186 (205)
158 2yv5_A YJEQ protein; hydrolase 97.5 1.3E-05 4.3E-10 81.1 -1.0 82 420-513 160-300 (302)
159 4a1f_A DNAB helicase, replicat 97.4 0.00029 9.8E-09 71.9 8.0 105 414-532 35-141 (338)
160 3nwj_A ATSK2; P loop, shikimat 97.4 1.6E-05 5.5E-10 77.9 -1.6 41 396-438 17-61 (250)
161 1in4_A RUVB, holliday junction 97.3 1E-06 3.5E-11 90.7 -11.5 39 397-438 19-64 (334)
162 1iy2_A ATP-dependent metallopr 97.3 1E-06 3.5E-11 88.1 -11.6 36 398-438 51-86 (278)
163 3k1j_A LON protease, ATP-depen 97.2 8E-06 2.8E-10 90.8 -5.9 46 499-545 182-227 (604)
164 1svm_A Large T antigen; AAA+ f 97.2 2.3E-06 8E-11 88.9 -9.6 35 495-529 277-312 (377)
165 1sq5_A Pantothenate kinase; P- 97.2 4E-06 1.4E-10 85.1 -8.2 122 395-533 36-199 (308)
166 2xau_A PRE-mRNA-splicing facto 97.2 9.3E-05 3.2E-09 84.4 1.4 64 500-563 190-256 (773)
167 3vaa_A Shikimate kinase, SK; s 97.2 0.00013 4.4E-09 68.8 2.2 34 405-438 5-38 (199)
168 1ixz_A ATP-dependent metallopr 97.1 1.2E-06 4.2E-11 86.2 -13.1 37 397-438 26-62 (254)
169 4a82_A Cystic fibrosis transme 97.1 0.12 4E-06 56.8 25.1 99 65-164 5-103 (578)
170 3ice_A Transcription terminati 97.0 0.00013 4.4E-09 74.9 0.3 43 394-438 131-187 (422)
171 1lw7_A Transcriptional regulat 97.0 1.4E-05 4.7E-10 83.2 -7.1 87 500-588 258-356 (365)
172 3qf4_B Uncharacterized ABC tra 96.9 0.28 9.7E-06 53.9 26.9 100 55-163 19-118 (598)
173 4e22_A Cytidylate kinase; P-lo 96.8 0.00022 7.6E-09 69.9 0.2 68 423-498 25-146 (252)
174 2e87_A Hypothetical protein PH 96.7 0.0026 9E-08 65.6 8.1 61 499-560 230-293 (357)
175 1ni3_A YCHF GTPase, YCHF GTP-b 96.7 1E-05 3.5E-10 84.4 -10.2 63 518-582 139-208 (392)
176 2yl4_A ATP-binding cassette SU 96.7 1 3.4E-05 49.5 38.5 10 398-407 359-368 (595)
177 2dy1_A Elongation factor G; tr 96.7 0.00046 1.6E-08 77.3 1.8 42 517-562 98-139 (665)
178 3kta_A Chromosome segregation 96.7 0.00051 1.8E-08 63.4 1.7 22 416-438 18-39 (182)
179 3bh0_A DNAB-like replicative h 96.7 0.00038 1.3E-08 70.7 0.9 105 413-531 56-164 (315)
180 2z43_A DNA repair and recombin 96.6 0.00073 2.5E-08 68.8 2.7 143 421-573 103-289 (324)
181 3a00_A Guanylate kinase, GMP k 96.6 0.00053 1.8E-08 63.7 1.3 39 488-526 126-169 (186)
182 2ewv_A Twitching motility prot 96.6 0.00076 2.6E-08 70.0 2.4 57 508-570 199-255 (372)
183 1jjv_A Dephospho-COA kinase; P 96.5 0.00078 2.7E-08 63.5 2.1 70 501-573 60-132 (206)
184 3b60_A Lipid A export ATP-bind 96.4 1.4 4.9E-05 48.1 34.2 38 128-165 71-108 (582)
185 1u0l_A Probable GTPase ENGC; p 96.2 0.00076 2.6E-08 67.9 0.1 68 420-488 164-290 (301)
186 3t34_A Dynamin-related protein 96.1 0.0028 9.6E-08 65.4 3.8 61 500-562 154-216 (360)
187 2ffh_A Protein (FFH); SRP54, s 95.9 0.014 4.7E-07 61.3 7.9 138 399-557 79-246 (425)
188 3kl4_A SRP54, signal recogniti 95.8 0.019 6.5E-07 60.4 8.4 15 424-438 96-110 (433)
189 1t9h_A YLOQ, probable GTPase E 95.8 0.0024 8.1E-08 64.2 1.3 62 420-482 168-288 (307)
190 3ney_A 55 kDa erythrocyte memb 95.7 0.00089 3E-08 62.8 -1.9 20 419-438 13-32 (197)
191 1fnn_A CDC6P, cell division co 95.7 0.028 9.6E-07 58.0 9.0 45 517-562 124-172 (389)
192 3llm_A ATP-dependent RNA helic 95.6 0.019 6.5E-07 55.2 7.1 51 502-554 162-213 (235)
193 3b9p_A CG5977-PA, isoform A; A 95.6 0.044 1.5E-06 54.4 9.9 71 502-572 97-187 (297)
194 3hr8_A Protein RECA; alpha and 95.6 0.13 4.5E-06 52.5 13.4 18 421-438 57-74 (356)
195 1v5w_A DMC1, meiotic recombina 95.5 0.0046 1.6E-07 63.4 2.2 143 421-573 118-308 (343)
196 3euj_A Chromosome partition pr 95.5 0.0054 1.8E-07 65.4 2.7 35 398-438 8-42 (483)
197 3b5x_A Lipid A export ATP-bind 95.4 4.1 0.00014 44.5 40.2 37 128-164 71-107 (582)
198 1u94_A RECA protein, recombina 95.3 0.12 4.2E-06 52.9 12.3 72 506-577 127-235 (356)
199 2dhr_A FTSH; AAA+ protein, hex 95.1 0.00038 1.3E-08 74.9 -7.6 36 398-438 42-77 (499)
200 2q6t_A DNAB replication FORK h 94.9 0.073 2.5E-06 56.4 9.4 103 414-531 189-295 (444)
201 2z4s_A Chromosomal replication 94.9 0.045 1.5E-06 58.0 7.6 67 516-582 191-263 (440)
202 2qtf_A Protein HFLX, GTP-bindi 94.8 0.0049 1.7E-07 63.6 -0.2 49 495-547 299-352 (364)
203 3euj_A Chromosome partition pr 94.7 0.057 1.9E-06 57.5 7.9 77 492-572 371-464 (483)
204 3tqc_A Pantothenate kinase; bi 94.2 0.016 5.6E-07 58.4 2.1 108 413-533 74-211 (321)
205 2j41_A Guanylate kinase; GMP, 94.0 0.019 6.6E-07 53.6 2.2 19 420-438 1-19 (207)
206 3uie_A Adenylyl-sulfate kinase 93.7 0.011 3.7E-07 55.4 -0.4 27 412-438 12-38 (200)
207 1l8q_A Chromosomal replication 93.4 0.11 3.8E-06 52.3 6.7 44 516-559 96-141 (324)
208 3bgw_A DNAB-like replicative h 93.3 0.14 4.6E-06 54.3 7.5 24 415-438 187-210 (444)
209 3h4m_A Proteasome-activating n 93.1 0.2 6.7E-06 49.2 7.8 56 508-563 100-170 (285)
210 1xp8_A RECA protein, recombina 92.7 0.38 1.3E-05 49.4 9.4 70 506-575 138-244 (366)
211 1kgd_A CASK, peripheral plasma 92.6 0.044 1.5E-06 50.2 2.2 16 423-438 3-18 (180)
212 4fcw_A Chaperone protein CLPB; 92.6 0.17 5.9E-06 50.3 6.7 35 510-545 110-145 (311)
213 2zts_A Putative uncharacterize 92.5 1.5 5E-05 41.6 13.0 56 517-572 134-206 (251)
214 1ega_A Protein (GTP-binding pr 92.3 0.056 1.9E-06 54.1 2.6 55 501-562 101-162 (301)
215 2w58_A DNAI, primosome compone 92.1 0.18 6.2E-06 46.7 5.7 13 426-438 55-67 (202)
216 2qby_A CDC6 homolog 1, cell di 92.0 0.041 1.4E-06 56.5 1.2 45 518-562 128-176 (386)
217 1ypw_A Transitional endoplasmi 91.7 0.2 6.8E-06 57.2 6.6 56 507-562 286-353 (806)
218 1njg_A DNA polymerase III subu 91.7 0.043 1.5E-06 51.9 0.9 44 518-562 126-169 (250)
219 2b8t_A Thymidine kinase; deoxy 91.6 0.36 1.2E-05 45.8 7.2 51 518-572 89-150 (223)
220 2o5v_A DNA replication and rep 91.5 0.072 2.5E-06 54.6 2.4 24 414-438 16-39 (359)
221 1zu4_A FTSY; GTPase, signal re 91.4 0.073 2.5E-06 53.7 2.3 24 415-438 95-118 (320)
222 4dcu_A GTP-binding protein ENG 91.4 0.27 9.2E-06 52.2 6.8 59 503-563 87-145 (456)
223 2i1q_A DNA repair and recombin 91.3 0.041 1.4E-06 55.5 0.4 144 421-573 94-290 (322)
224 3tau_A Guanylate kinase, GMP k 91.2 0.079 2.7E-06 49.7 2.2 16 423-438 6-21 (208)
225 2vhj_A Ntpase P4, P4; non- hyd 91.0 0.45 1.5E-05 47.7 7.5 18 421-438 119-136 (331)
226 1lv7_A FTSH; alpha/beta domain 91.0 0.53 1.8E-05 45.4 8.0 22 415-438 37-58 (257)
227 3bos_A Putative DNA replicatio 90.6 0.32 1.1E-05 45.9 6.0 42 517-558 103-147 (242)
228 3dm5_A SRP54, signal recogniti 90.6 1.3 4.3E-05 46.5 10.8 15 424-438 99-113 (443)
229 3lxx_A GTPase IMAP family memb 90.2 0.23 7.9E-06 47.4 4.6 56 501-557 93-154 (239)
230 4eun_A Thermoresistant glucoki 89.9 0.12 4.1E-06 48.0 2.2 20 419-438 23-42 (200)
231 1y63_A LMAJ004144AAA protein; 89.7 0.12 4.1E-06 47.4 1.9 22 417-438 2-23 (184)
232 1j8m_F SRP54, signal recogniti 89.2 3.3 0.00011 40.9 12.2 20 418-438 92-111 (297)
233 3d8b_A Fidgetin-like protein 1 88.9 0.77 2.6E-05 46.8 7.5 16 423-438 115-130 (357)
234 3syl_A Protein CBBX; photosynt 88.8 1 3.6E-05 44.5 8.3 55 518-572 130-202 (309)
235 3cf0_A Transitional endoplasmi 88.7 0.32 1.1E-05 48.4 4.3 19 420-438 44-62 (301)
236 3cmu_A Protein RECA, recombina 88.6 0.89 3E-05 56.3 8.8 27 412-438 1066-1094(2050)
237 1g5t_A COB(I)alamin adenosyltr 88.4 0.35 1.2E-05 44.8 4.0 67 506-573 106-179 (196)
238 4eaq_A DTMP kinase, thymidylat 88.1 0.16 5.4E-06 48.5 1.6 24 415-438 13-39 (229)
239 1f6b_A SAR1; gtpases, N-termin 87.7 0.071 2.4E-06 49.4 -1.1 33 403-438 6-38 (198)
240 1w1w_A Structural maintenance 87.7 0.19 6.6E-06 52.8 2.1 34 396-438 6-39 (430)
241 2r8r_A Sensor protein; KDPD, P 87.3 0.58 2E-05 44.3 4.9 45 513-557 79-125 (228)
242 2qz4_A Paraplegin; AAA+, SPG7, 87.1 2.1 7.2E-05 40.9 9.1 16 423-438 37-52 (262)
243 4b4t_L 26S protease subunit RP 86.7 1.4 4.6E-05 46.3 7.8 56 508-563 264-334 (437)
244 1knq_A Gluconate kinase; ALFA/ 86.3 0.22 7.7E-06 44.8 1.5 16 423-438 6-21 (175)
245 1f2t_A RAD50 ABC-ATPase; DNA d 85.7 0.34 1.2E-05 42.7 2.3 21 417-438 16-36 (149)
246 1sxj_D Activator 1 41 kDa subu 85.6 0.74 2.5E-05 46.4 5.1 43 518-561 133-175 (353)
247 3cmw_A Protein RECA, recombina 85.5 4.1 0.00014 49.8 12.1 137 422-575 729-902 (1706)
248 2p67_A LAO/AO transport system 84.9 0.22 7.5E-06 50.6 0.7 26 413-438 44-69 (341)
249 2vp4_A Deoxynucleoside kinase; 84.7 0.31 1.1E-05 46.3 1.7 20 419-438 14-33 (230)
250 1qhl_A Protein (cell division 84.7 0.028 9.7E-07 53.7 -5.7 32 396-438 9-40 (227)
251 1oix_A RAS-related protein RAB 84.3 0.49 1.7E-05 43.3 2.8 37 507-545 152-188 (191)
252 1kag_A SKI, shikimate kinase I 84.3 0.35 1.2E-05 43.3 1.7 15 424-438 3-17 (173)
253 2qor_A Guanylate kinase; phosp 84.3 0.35 1.2E-05 45.0 1.7 17 422-438 9-25 (204)
254 2chg_A Replication factor C sm 83.7 4.6 0.00016 36.9 9.5 43 517-560 101-143 (226)
255 1rz3_A Hypothetical protein rb 83.6 0.33 1.1E-05 45.1 1.3 18 421-438 18-35 (201)
256 1m2o_B GTP-binding protein SAR 83.3 0.4 1.4E-05 43.8 1.7 24 414-438 13-36 (190)
257 2gza_A Type IV secretion syste 82.6 0.24 8.2E-06 50.8 -0.1 66 502-574 236-302 (361)
258 3cmu_A Protein RECA, recombina 82.6 4.2 0.00014 50.5 10.5 70 506-575 447-553 (2050)
259 3uk6_A RUVB-like 2; hexameric 82.2 1.4 4.9E-05 44.7 5.6 37 519-557 190-226 (368)
260 3n70_A Transport activator; si 81.4 2.7 9.4E-05 36.3 6.4 40 518-558 76-115 (145)
261 3cmw_A Protein RECA, recombina 81.0 6.1 0.00021 48.4 11.1 68 507-574 448-552 (1706)
262 1xwi_A SKD1 protein; VPS4B, AA 80.7 1.4 4.8E-05 44.2 4.7 17 422-438 42-58 (322)
263 2qp9_X Vacuolar protein sortin 80.3 3.6 0.00012 41.8 7.7 61 511-571 136-214 (355)
264 2v3c_C SRP54, signal recogniti 80.1 6.4 0.00022 41.1 9.7 13 426-438 100-112 (432)
265 1ly1_A Polynucleotide kinase; 79.9 3.6 0.00012 36.6 6.8 13 426-438 3-15 (181)
266 4b4t_M 26S protease regulatory 79.8 2.9 9.8E-05 43.8 6.9 18 421-438 211-228 (434)
267 2pez_A Bifunctional 3'-phospho 79.8 0.63 2.2E-05 42.0 1.7 16 423-438 3-18 (179)
268 2v1u_A Cell division control p 79.7 4.9 0.00017 40.6 8.7 43 518-560 130-178 (387)
269 3lxw_A GTPase IMAP family memb 79.4 1.9 6.5E-05 41.3 5.1 59 502-561 86-151 (247)
270 2i9o_A MHB8A peptide; beta-hai 79.2 1.2 4.2E-05 27.2 2.2 17 4-20 6-22 (37)
271 3t15_A Ribulose bisphosphate c 79.0 0.48 1.7E-05 46.9 0.6 15 424-438 35-49 (293)
272 1d2n_A N-ethylmaleimide-sensit 78.9 1.7 5.9E-05 42.1 4.6 53 511-563 117-181 (272)
273 1hqc_A RUVB; extended AAA-ATPa 78.8 6 0.00021 39.0 8.8 29 517-546 89-117 (324)
274 4b4t_J 26S protease regulatory 78.8 3.2 0.00011 42.9 6.7 59 513-571 236-316 (405)
275 3co5_A Putative two-component 78.4 3.9 0.00013 35.3 6.3 40 518-558 75-115 (143)
276 2zan_A Vacuolar protein sortin 78.2 5.2 0.00018 41.9 8.4 58 514-571 223-298 (444)
277 4b4t_K 26S protease regulatory 77.3 5.3 0.00018 41.7 8.0 53 511-563 258-325 (428)
278 4ad8_A DNA repair protein RECN 77.0 0.56 1.9E-05 50.6 0.4 24 414-438 50-73 (517)
279 2ga8_A Hypothetical 39.9 kDa p 76.9 0.35 1.2E-05 49.1 -1.1 26 413-438 10-37 (359)
280 1jr3_A DNA polymerase III subu 76.4 0.67 2.3E-05 47.1 0.8 42 518-560 119-160 (373)
281 3zvl_A Bifunctional polynucleo 76.2 9.4 0.00032 39.6 9.6 19 420-438 253-271 (416)
282 1jcn_A Inosine monophosphate d 75.7 0.033 1.1E-06 60.2 -9.7 70 513-586 28-101 (514)
283 1ypw_A Transitional endoplasmi 75.5 0.75 2.6E-05 52.5 1.0 22 417-438 503-524 (806)
284 3hu3_A Transitional endoplasmi 75.4 6.1 0.00021 42.0 8.0 17 422-438 235-251 (489)
285 2gj8_A MNME, tRNA modification 75.1 0.93 3.2E-05 40.6 1.3 16 423-438 2-17 (172)
286 4b4t_I 26S protease regulatory 74.2 6.2 0.00021 41.0 7.4 57 508-564 265-336 (437)
287 3qks_A DNA double-strand break 73.9 1.4 4.8E-05 40.9 2.3 21 417-438 16-36 (203)
288 4b4t_H 26S protease regulatory 73.4 5.2 0.00018 42.0 6.7 64 508-571 292-377 (467)
289 1m7g_A Adenylylsulfate kinase; 73.3 1.1 3.7E-05 41.8 1.3 19 420-438 20-38 (211)
290 3cm0_A Adenylate kinase; ATP-b 73.1 1 3.5E-05 40.7 1.1 16 423-438 2-17 (186)
291 3pfi_A Holliday junction ATP-d 72.9 12 0.00041 37.2 9.2 55 516-571 104-181 (338)
292 1ex7_A Guanylate kinase; subst 72.8 1.2 4.2E-05 40.8 1.5 12 427-438 3-14 (186)
293 3m6a_A ATP-dependent protease 72.6 0.87 3E-05 49.4 0.6 25 413-438 97-121 (543)
294 1qhx_A CPT, protein (chloramph 72.5 1.5 5.3E-05 39.1 2.2 15 424-438 2-16 (178)
295 2qby_B CDC6 homolog 3, cell di 72.5 1.9 6.6E-05 43.9 3.2 52 509-560 123-175 (384)
296 2f9l_A RAB11B, member RAS onco 72.4 1.9 6.5E-05 39.4 2.8 36 509-546 130-165 (199)
297 3qkt_A DNA double-strand break 72.3 1.4 4.9E-05 44.4 2.1 21 417-438 16-36 (339)
298 3trf_A Shikimate kinase, SK; a 71.3 1.7 5.7E-05 39.3 2.1 15 424-438 4-18 (185)
299 3vfd_A Spastin; ATPase, microt 71.2 10 0.00035 38.8 8.4 16 423-438 146-161 (389)
300 2yvu_A Probable adenylyl-sulfa 70.5 1.3 4.4E-05 40.2 1.1 18 421-438 9-26 (186)
301 3cr8_A Sulfate adenylyltranfer 70.4 0.95 3.2E-05 49.1 0.2 19 420-438 364-382 (552)
302 1kht_A Adenylate kinase; phosp 70.3 1.8 6.1E-05 39.1 2.1 15 424-438 2-16 (192)
303 2qag_A Septin-2, protein NEDD5 69.9 0.34 1.2E-05 49.7 -3.3 36 394-438 15-50 (361)
304 2p5t_B PEZT; postsegregational 69.6 1.1 3.9E-05 43.0 0.6 18 421-438 28-45 (253)
305 1q3t_A Cytidylate kinase; nucl 69.4 1.9 6.6E-05 40.8 2.2 17 422-438 13-29 (236)
306 1ko7_A HPR kinase/phosphatase; 69.1 2.1 7E-05 42.7 2.3 25 413-438 133-157 (314)
307 3u61_B DNA polymerase accessor 69.0 18 0.00063 35.5 9.5 44 518-561 105-148 (324)
308 3r20_A Cytidylate kinase; stru 68.7 1.8 6.2E-05 41.2 1.8 15 424-438 8-22 (233)
309 2v54_A DTMP kinase, thymidylat 68.5 2.1 7.2E-05 39.2 2.2 15 424-438 3-17 (204)
310 3pxi_A Negative regulator of g 67.8 14 0.00046 41.7 9.1 28 517-545 578-605 (758)
311 3iij_A Coilin-interacting nucl 67.8 1.4 4.8E-05 39.6 0.7 16 423-438 9-24 (180)
312 1qvr_A CLPB protein; coiled co 67.7 4 0.00014 46.8 4.7 32 512-544 653-685 (854)
313 1ojl_A Transcriptional regulat 67.5 6.9 0.00024 38.6 5.9 41 518-559 96-147 (304)
314 3be4_A Adenylate kinase; malar 67.2 12 0.0004 34.6 7.2 15 424-438 4-18 (217)
315 3kb2_A SPBC2 prophage-derived 67.1 2.2 7.5E-05 37.7 1.9 13 426-438 2-14 (173)
316 2rhm_A Putative kinase; P-loop 67.1 1.8 6.1E-05 39.2 1.3 16 423-438 3-18 (193)
317 3t61_A Gluconokinase; PSI-biol 67.0 2 6.8E-05 39.5 1.7 14 425-438 18-31 (202)
318 2www_A Methylmalonic aciduria 66.9 2.8 9.7E-05 42.5 2.9 16 423-438 72-87 (349)
319 3lw7_A Adenylate kinase relate 66.3 2.2 7.5E-05 37.6 1.8 13 426-438 2-14 (179)
320 2j37_W Signal recognition part 66.2 15 0.00052 39.0 8.5 14 425-438 101-114 (504)
321 2c95_A Adenylate kinase 1; tra 65.8 2.2 7.6E-05 38.7 1.7 16 423-438 7-22 (196)
322 2wwf_A Thymidilate kinase, put 65.3 2.5 8.5E-05 38.9 2.0 16 423-438 8-23 (212)
323 3d3q_A TRNA delta(2)-isopenten 65.3 3.5 0.00012 41.5 3.2 22 426-447 8-41 (340)
324 2if2_A Dephospho-COA kinase; a 65.0 2.2 7.5E-05 39.2 1.5 12 427-438 3-14 (204)
325 1nn5_A Similar to deoxythymidy 64.9 2.5 8.7E-05 38.9 2.0 17 422-438 6-22 (215)
326 2vli_A Antibiotic resistance p 63.5 2.7 9.4E-05 37.6 1.9 16 423-438 3-18 (183)
327 1sxj_C Activator 1 40 kDa subu 63.4 1.1 3.7E-05 45.2 -1.0 26 413-438 32-59 (340)
328 2qmh_A HPR kinase/phosphorylas 63.1 3.9 0.00013 37.8 2.8 25 413-438 23-47 (205)
329 1oix_A RAS-related protein RAB 62.9 2.5 8.7E-05 38.3 1.5 12 427-438 31-42 (191)
330 1uf9_A TT1252 protein; P-loop, 62.6 2.5 8.6E-05 38.6 1.4 14 425-438 8-21 (203)
331 2plr_A DTMP kinase, probable t 62.3 2.7 9.4E-05 38.5 1.7 15 424-438 3-17 (213)
332 1q57_A DNA primase/helicase; d 61.9 37 0.0013 35.9 10.7 24 415-438 232-255 (503)
333 2bwj_A Adenylate kinase 5; pho 61.9 2.3 8E-05 38.6 1.1 17 422-438 9-25 (199)
334 1xjc_A MOBB protein homolog; s 61.9 4.6 0.00016 36.2 3.0 22 426-447 5-43 (169)
335 1gvn_B Zeta; postsegregational 61.8 2.9 9.9E-05 41.1 1.8 15 424-438 32-46 (287)
336 2f9l_A RAB11B, member RAS onco 61.7 3 0.0001 38.0 1.8 12 427-438 7-18 (199)
337 2whx_A Serine protease/ntpase/ 61.3 36 0.0012 37.1 10.7 40 516-556 275-315 (618)
338 3a8t_A Adenylate isopentenyltr 61.1 2.9 0.0001 42.0 1.7 15 424-438 39-53 (339)
339 2xxa_A Signal recognition part 60.8 74 0.0025 32.9 12.5 15 424-438 99-113 (433)
340 1aky_A Adenylate kinase; ATP:A 60.3 3.7 0.00013 38.2 2.2 16 423-438 2-17 (220)
341 1vht_A Dephospho-COA kinase; s 59.7 3.3 0.00011 38.5 1.7 15 424-438 3-17 (218)
342 1np6_A Molybdopterin-guanine d 59.2 3.7 0.00013 37.0 1.9 14 425-438 6-19 (174)
343 2zej_A Dardarin, leucine-rich 59.0 3.6 0.00012 36.9 1.8 12 427-438 4-15 (184)
344 4ag6_A VIRB4 ATPase, type IV s 58.5 3.8 0.00013 42.1 2.1 37 400-438 9-48 (392)
345 1a7j_A Phosphoribulokinase; tr 58.5 3.6 0.00012 40.5 1.8 25 424-448 4-45 (290)
346 1tev_A UMP-CMP kinase; ploop, 58.5 3.4 0.00012 37.2 1.5 15 424-438 2-16 (196)
347 2cdn_A Adenylate kinase; phosp 57.4 4.5 0.00015 36.9 2.2 16 423-438 18-33 (201)
348 2wji_A Ferrous iron transport 57.4 4 0.00014 35.8 1.8 50 510-564 71-123 (165)
349 3cf2_A TER ATPase, transitiona 57.1 3.9 0.00013 46.2 2.0 63 509-571 288-369 (806)
350 1sxj_B Activator 1 37 kDa subu 56.6 26 0.00088 34.1 7.9 42 518-560 107-148 (323)
351 2jaq_A Deoxyguanosine kinase; 56.3 4.4 0.00015 36.8 1.9 12 427-438 2-13 (205)
352 3exa_A TRNA delta(2)-isopenten 55.8 4.1 0.00014 40.6 1.7 23 425-447 3-37 (322)
353 2ze6_A Isopentenyl transferase 55.7 3.8 0.00013 39.4 1.4 12 427-438 3-14 (253)
354 1zd8_A GTP:AMP phosphotransfer 55.6 4.4 0.00015 37.9 1.8 16 423-438 5-20 (227)
355 1via_A Shikimate kinase; struc 55.3 4.1 0.00014 36.3 1.5 12 427-438 6-17 (175)
356 2iyv_A Shikimate kinase, SK; t 55.2 4.1 0.00014 36.5 1.5 14 425-438 2-15 (184)
357 2dby_A GTP-binding protein; GD 55.1 1.8 6.2E-05 44.3 -1.1 51 427-481 3-61 (368)
358 3auy_A DNA double-strand break 54.7 4.5 0.00015 41.3 1.9 22 416-438 17-38 (371)
359 1zak_A Adenylate kinase; ATP:A 54.5 4.2 0.00014 37.9 1.5 15 424-438 4-18 (222)
360 3tlx_A Adenylate kinase 2; str 53.4 4.7 0.00016 38.4 1.6 16 423-438 27-42 (243)
361 1gtv_A TMK, thymidylate kinase 53.2 2.7 9.4E-05 38.7 -0.1 72 427-499 2-97 (214)
362 1ukz_A Uridylate kinase; trans 53.2 4.6 0.00016 36.9 1.5 15 424-438 14-28 (203)
363 3fb4_A Adenylate kinase; psych 52.7 5.2 0.00018 36.9 1.8 12 427-438 2-13 (216)
364 3szr_A Interferon-induced GTP- 52.7 11 0.00038 41.2 4.7 54 503-557 168-223 (608)
365 1e6c_A Shikimate kinase; phosp 51.5 5.1 0.00018 35.3 1.5 13 426-438 3-15 (173)
366 3tqf_A HPR(Ser) kinase; transf 51.1 10 0.00035 34.2 3.3 24 414-438 6-29 (181)
367 3umf_A Adenylate kinase; rossm 50.9 4.4 0.00015 38.0 1.0 17 422-438 26-42 (217)
368 1nks_A Adenylate kinase; therm 50.8 5.4 0.00018 35.8 1.5 12 427-438 3-14 (194)
369 3dl0_A Adenylate kinase; phosp 50.8 5.8 0.0002 36.6 1.8 12 427-438 2-13 (216)
370 3end_A Light-independent proto 50.4 45 0.0016 32.4 8.5 102 422-529 38-167 (307)
371 2wjg_A FEOB, ferrous iron tran 50.4 6 0.00021 35.2 1.8 13 426-438 8-20 (188)
372 2pt5_A Shikimate kinase, SK; a 49.7 6.6 0.00023 34.4 1.9 12 427-438 2-13 (168)
373 1zuh_A Shikimate kinase; alpha 49.6 6.7 0.00023 34.5 1.9 14 425-438 7-20 (168)
374 2z0h_A DTMP kinase, thymidylat 49.1 6.4 0.00022 35.5 1.8 12 427-438 2-13 (197)
375 3bs4_A Uncharacterized protein 49.0 1.3E+02 0.0043 28.7 11.1 18 421-438 17-34 (260)
376 2grj_A Dephospho-COA kinase; T 49.0 6.5 0.00022 36.0 1.8 13 426-438 13-25 (192)
377 1uj2_A Uridine-cytidine kinase 49.0 6.3 0.00022 37.6 1.8 13 426-438 23-35 (252)
378 3ake_A Cytidylate kinase; CMP 48.9 6.5 0.00022 35.8 1.8 12 427-438 4-15 (208)
379 3a4m_A L-seryl-tRNA(SEC) kinas 48.9 6.1 0.00021 37.9 1.7 15 424-438 3-17 (260)
380 1qf9_A UMP/CMP kinase, protein 48.3 6.1 0.00021 35.4 1.5 14 425-438 6-19 (194)
381 3v9p_A DTMP kinase, thymidylat 48.2 7.3 0.00025 36.8 2.0 16 423-438 23-38 (227)
382 3foz_A TRNA delta(2)-isopenten 47.8 6.6 0.00022 39.0 1.7 14 425-438 10-23 (316)
383 2pbr_A DTMP kinase, thymidylat 47.3 7.5 0.00026 34.9 1.9 12 427-438 2-13 (195)
384 3o8b_A HCV NS3 protease/helica 47.2 50 0.0017 36.3 8.8 29 518-547 318-346 (666)
385 1jbk_A CLPB protein; beta barr 46.8 8.2 0.00028 34.1 2.1 16 423-438 41-56 (195)
386 1kao_A RAP2A; GTP-binding prot 46.1 7.7 0.00026 33.4 1.8 12 427-438 5-16 (167)
387 1z2a_A RAS-related protein RAB 45.9 7.9 0.00027 33.5 1.8 12 427-438 7-18 (168)
388 2orv_A Thymidine kinase; TP4A 45.8 43 0.0015 31.5 6.9 51 517-572 89-150 (234)
389 2f6r_A COA synthase, bifunctio 45.8 7 0.00024 38.1 1.5 14 425-438 75-88 (281)
390 3q72_A GTP-binding protein RAD 44.9 7.7 0.00026 33.6 1.5 13 427-439 4-16 (166)
391 2dyk_A GTP-binding protein; GT 44.7 8.4 0.00029 33.1 1.8 52 509-563 70-122 (161)
392 3q85_A GTP-binding protein REM 44.7 8.4 0.00029 33.4 1.8 13 427-439 4-16 (169)
393 3l0o_A Transcription terminati 44.3 4.5 0.00015 41.5 -0.2 22 417-438 167-188 (427)
394 1r8s_A ADP-ribosylation factor 44.0 8.8 0.0003 33.1 1.8 51 509-561 58-113 (164)
395 2ged_A SR-beta, signal recogni 43.8 8.7 0.0003 34.4 1.8 15 424-438 47-61 (193)
396 1z08_A RAS-related protein RAB 43.7 8.9 0.0003 33.3 1.8 13 427-439 8-20 (170)
397 1c1y_A RAS-related protein RAP 43.5 9.1 0.00031 33.0 1.8 12 427-438 5-16 (167)
398 3lv8_A DTMP kinase, thymidylat 43.4 9.4 0.00032 36.2 2.0 15 424-438 26-40 (236)
399 2nzj_A GTP-binding protein REM 43.4 9 0.00031 33.4 1.8 13 427-439 6-18 (175)
400 1ky3_A GTP-binding protein YPT 43.4 8.9 0.00031 33.6 1.8 13 427-439 10-22 (182)
401 1u8z_A RAS-related protein RAL 43.4 9.1 0.00031 32.9 1.8 12 427-438 6-17 (168)
402 1g16_A RAS-related protein SEC 43.2 8.5 0.00029 33.3 1.5 12 427-438 5-16 (170)
403 2lkc_A Translation initiation 43.1 10 0.00036 33.1 2.1 16 423-438 6-21 (178)
404 3tmk_A Thymidylate kinase; pho 43.1 9.5 0.00033 35.6 1.9 16 423-438 3-18 (216)
405 1ek0_A Protein (GTP-binding pr 43.0 9.3 0.00032 33.0 1.8 50 510-563 67-122 (170)
406 3eph_A TRNA isopentenyltransfe 42.9 7.9 0.00027 39.9 1.4 22 426-447 3-36 (409)
407 2h92_A Cytidylate kinase; ross 42.7 8.7 0.0003 35.4 1.6 14 425-438 3-16 (219)
408 2ce2_X GTPase HRAS; signaling 42.5 8.9 0.0003 32.9 1.5 12 427-438 5-16 (166)
409 1wms_A RAB-9, RAB9, RAS-relate 42.4 9.5 0.00032 33.4 1.8 12 427-438 9-20 (177)
410 4edh_A DTMP kinase, thymidylat 42.4 9.1 0.00031 35.6 1.7 16 423-438 4-19 (213)
411 2erx_A GTP-binding protein DI- 42.4 9.5 0.00033 33.0 1.8 12 427-438 5-16 (172)
412 1z0j_A RAB-22, RAS-related pro 42.1 9.7 0.00033 32.9 1.8 12 427-438 8-19 (170)
413 3crm_A TRNA delta(2)-isopenten 41.9 9.4 0.00032 38.1 1.8 23 426-448 6-40 (323)
414 4tmk_A Protein (thymidylate ki 41.8 10 0.00035 35.3 1.9 15 424-438 2-16 (213)
415 3ihw_A Centg3; RAS, centaurin, 41.8 9.8 0.00033 34.0 1.8 12 427-438 22-33 (184)
416 1r2q_A RAS-related protein RAB 41.0 10 0.00036 32.7 1.8 12 427-438 8-19 (170)
417 2p65_A Hypothetical protein PF 40.6 9.3 0.00032 33.7 1.4 16 423-438 41-56 (187)
418 1upt_A ARL1, ADP-ribosylation 40.4 11 0.00037 32.7 1.8 14 425-438 7-20 (171)
419 1fzq_A ADP-ribosylation factor 40.3 9.9 0.00034 33.8 1.5 13 426-438 17-29 (181)
420 1ak2_A Adenylate kinase isoenz 40.3 12 0.00041 35.1 2.2 16 423-438 14-29 (233)
421 3tw8_B RAS-related protein RAB 40.3 11 0.00037 33.1 1.8 12 427-438 11-22 (181)
422 3cbq_A GTP-binding protein REM 40.3 11 0.00037 34.2 1.8 12 427-438 25-36 (195)
423 2fn4_A P23, RAS-related protei 40.1 10 0.00034 33.3 1.5 12 427-438 11-22 (181)
424 2hxs_A RAB-26, RAS-related pro 39.8 11 0.00038 33.0 1.8 14 427-440 8-21 (178)
425 3ld9_A DTMP kinase, thymidylat 39.8 11 0.00036 35.5 1.7 16 423-438 19-34 (223)
426 1sky_E F1-ATPase, F1-ATP synth 39.4 11 0.00039 39.6 2.0 24 414-438 141-164 (473)
427 3sr0_A Adenylate kinase; phosp 39.4 11 0.00038 34.8 1.8 12 427-438 2-13 (206)
428 2y8e_A RAB-protein 6, GH09086P 39.1 11 0.00037 33.0 1.5 12 427-438 16-27 (179)
429 1e4v_A Adenylate kinase; trans 38.8 11 0.00037 34.8 1.5 12 427-438 2-13 (214)
430 3bc1_A RAS-related protein RAB 38.8 12 0.0004 33.2 1.8 53 505-561 80-139 (195)
431 1moz_A ARL1, ADP-ribosylation 38.4 9.7 0.00033 33.6 1.2 15 424-438 17-31 (183)
432 2oil_A CATX-8, RAS-related pro 38.4 12 0.00041 33.4 1.8 12 427-438 27-38 (193)
433 3kkq_A RAS-related protein M-R 38.3 12 0.00041 33.0 1.8 12 427-438 20-31 (183)
434 2g6b_A RAS-related protein RAB 38.3 12 0.00041 32.8 1.8 56 505-562 70-129 (180)
435 2i7u_A Four-alpha-helix bundle 38.2 10 0.00036 25.8 0.9 8 13-20 29-36 (62)
436 3pqc_A Probable GTP-binding pr 37.9 11 0.00038 33.5 1.4 13 426-438 24-36 (195)
437 4dsu_A GTPase KRAS, isoform 2B 37.9 12 0.00042 33.0 1.8 12 427-438 6-17 (189)
438 2fu5_C RAS-related protein RAB 37.8 12 0.00043 32.9 1.8 16 427-442 10-25 (183)
439 2xb4_A Adenylate kinase; ATP-b 37.8 12 0.00041 34.8 1.8 12 427-438 2-13 (223)
440 2cxx_A Probable GTP-binding pr 37.8 11 0.00038 33.4 1.4 12 427-438 3-14 (190)
441 1svi_A GTP-binding protein YSX 37.7 11 0.00038 33.6 1.4 15 424-438 22-36 (195)
442 1mh1_A RAC1; GTP-binding, GTPa 37.6 13 0.00043 32.8 1.8 52 510-563 68-123 (186)
443 2a9k_A RAS-related protein RAL 37.4 13 0.00043 32.8 1.8 13 426-438 19-31 (187)
444 2efe_B Small GTP-binding prote 37.2 13 0.00044 32.6 1.8 13 427-439 14-26 (181)
445 2r62_A Cell division protease 37.0 4.7 0.00016 38.7 -1.3 20 510-529 95-114 (268)
446 2cjw_A GTP-binding protein GEM 36.9 13 0.00044 33.5 1.8 49 511-563 73-128 (192)
447 3cf2_A TER ATPase, transitiona 36.4 19 0.00066 40.6 3.4 17 422-438 508-524 (806)
448 3t1o_A Gliding protein MGLA; G 36.4 13 0.00046 33.0 1.8 15 427-441 16-30 (198)
449 2q6t_A DNAB replication FORK h 36.4 63 0.0022 33.5 7.2 71 500-572 292-396 (444)
450 1z0f_A RAB14, member RAS oncog 36.3 14 0.00046 32.3 1.8 55 505-561 74-132 (179)
451 3con_A GTPase NRAS; structural 36.2 14 0.00046 32.9 1.8 12 427-438 23-34 (190)
452 2bme_A RAB4A, RAS-related prot 36.2 13 0.00043 32.9 1.5 54 505-562 69-128 (186)
453 3bwd_D RAC-like GTP-binding pr 36.1 16 0.00054 32.0 2.2 49 510-562 71-125 (182)
454 1m7b_A RND3/RHOE small GTP-bin 36.0 13 0.00044 33.0 1.5 47 512-562 72-124 (184)
455 2gf9_A RAS-related protein RAB 36.0 14 0.00047 32.9 1.8 12 427-438 24-35 (189)
456 3t5g_A GTP-binding protein RHE 35.8 13 0.00044 32.7 1.5 12 427-438 8-19 (181)
457 3clv_A RAB5 protein, putative; 35.7 14 0.00047 33.0 1.8 52 504-560 102-158 (208)
458 1p5z_B DCK, deoxycytidine kina 35.5 13 0.00046 35.5 1.7 17 422-438 21-37 (263)
459 2bov_A RAla, RAS-related prote 35.5 14 0.00048 33.2 1.8 12 427-438 16-27 (206)
460 1z06_A RAS-related protein RAB 35.4 14 0.00048 32.8 1.8 56 502-561 77-139 (189)
461 3k53_A Ferrous iron transport 35.2 13 0.00044 35.8 1.5 36 527-562 144-181 (271)
462 1ksh_A ARF-like protein 2; sma 35.2 14 0.00049 32.6 1.8 16 423-438 16-31 (186)
463 2ohf_A Protein OLA1, GTP-bindi 35.1 12 0.00041 38.5 1.3 18 421-438 18-35 (396)
464 1nrj_B SR-beta, signal recogni 35.1 14 0.00049 33.7 1.8 13 426-438 13-25 (218)
465 1mky_A Probable GTP-binding pr 34.5 14 0.00048 38.5 1.8 13 426-438 181-193 (439)
466 3t5d_A Septin-7; GTP-binding p 34.4 13 0.00046 35.7 1.5 12 427-438 10-21 (274)
467 2fg5_A RAB-22B, RAS-related pr 34.3 14 0.00048 33.1 1.5 12 427-438 25-36 (192)
468 2wv9_A Flavivirin protease NS2 34.2 1.6E+02 0.0054 32.4 10.3 15 424-438 240-254 (673)
469 3c5c_A RAS-like protein 12; GD 34.1 15 0.00052 32.7 1.8 12 427-438 23-34 (187)
470 2a5j_A RAS-related protein RAB 34.0 16 0.00053 32.7 1.8 13 427-439 23-35 (191)
471 2iwr_A Centaurin gamma 1; ANK 33.9 12 0.00042 32.7 1.1 13 426-438 8-20 (178)
472 2ew1_A RAS-related protein RAB 33.9 14 0.00049 33.6 1.5 53 508-562 88-144 (201)
473 1zbd_A Rabphilin-3A; G protein 33.7 16 0.00054 32.9 1.8 12 427-438 10-21 (203)
474 1vg8_A RAS-related protein RAB 33.6 16 0.00053 33.0 1.8 12 427-438 10-21 (207)
475 1ltq_A Polynucleotide kinase; 33.6 15 0.00052 35.7 1.8 13 426-438 3-15 (301)
476 3reg_A RHO-like small GTPase; 33.4 16 0.00055 32.6 1.8 51 510-562 86-140 (194)
477 3tkl_A RAS-related protein RAB 33.2 16 0.00055 32.5 1.8 12 427-438 18-29 (196)
478 2fh5_B SR-beta, signal recogni 33.2 16 0.00055 33.2 1.8 13 426-438 8-20 (214)
479 3fkq_A NTRC-like two-domain pr 33.1 2.6E+02 0.009 27.8 11.2 106 423-536 141-276 (373)
480 2il1_A RAB12; G-protein, GDP, 33.1 16 0.00056 32.6 1.8 56 505-562 85-144 (192)
481 2b6h_A ADP-ribosylation factor 32.9 15 0.00052 32.9 1.5 16 423-438 27-42 (192)
482 2qu8_A Putative nucleolar GTP- 32.7 16 0.00056 33.7 1.8 13 426-438 30-42 (228)
483 3dz8_A RAS-related protein RAB 32.7 16 0.00053 32.7 1.5 57 503-561 80-140 (191)
484 1zj6_A ADP-ribosylation factor 32.7 16 0.00053 32.5 1.5 15 424-438 15-29 (187)
485 2atv_A RERG, RAS-like estrogen 32.6 17 0.00057 32.6 1.8 13 426-438 29-41 (196)
486 2p5s_A RAS and EF-hand domain 32.6 17 0.00057 32.7 1.8 15 424-438 27-41 (199)
487 3cph_A RAS-related protein SEC 32.6 17 0.00057 33.0 1.8 14 425-438 20-33 (213)
488 1x3s_A RAS-related protein RAB 32.5 17 0.00058 32.3 1.8 13 426-438 16-28 (195)
489 2h57_A ADP-ribosylation factor 32.5 16 0.00053 32.6 1.5 13 426-438 22-34 (190)
490 4bas_A ADP-ribosylation factor 32.3 17 0.00058 32.4 1.8 13 426-438 18-30 (199)
491 2gf0_A GTP-binding protein DI- 32.3 16 0.00054 32.7 1.5 13 426-438 9-21 (199)
492 2hf9_A Probable hydrogenase ni 32.3 16 0.00054 33.7 1.5 13 426-438 39-51 (226)
493 2q3h_A RAS homolog gene family 32.2 17 0.00059 32.6 1.8 48 512-563 85-138 (201)
494 3l0i_B RAS-related protein RAB 32.2 18 0.00062 32.5 1.9 15 427-441 35-49 (199)
495 2bcg_Y Protein YP2, GTP-bindin 32.2 16 0.00054 33.0 1.5 12 427-438 10-21 (206)
496 3oes_A GTPase rhebl1; small GT 32.1 16 0.00055 32.9 1.5 15 424-438 23-37 (201)
497 4djt_A GTP-binding nuclear pro 32.1 17 0.00058 33.2 1.8 12 427-438 13-24 (218)
498 1zd9_A ADP-ribosylation factor 32.1 17 0.00059 32.3 1.8 13 426-438 23-35 (188)
499 2xtp_A GTPase IMAP family memb 31.7 16 0.00055 34.7 1.5 55 506-562 93-152 (260)
500 2fv8_A H6, RHO-related GTP-bin 31.6 16 0.00056 33.1 1.5 12 427-438 27-38 (207)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.5e-96 Score=881.59 Aligned_cols=546 Identities=33% Similarity=0.527 Sum_probs=492.6
Q ss_pred ccchHHHHHHhhcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------------CCchhHHHHHHHHHH
Q 007337 54 ANVGFGRVLALAKPDA-GKLIIATVALLIASVSSILIPKFGGKIIDIVSGDT-------------ETPEQKAEALAAVRS 119 (607)
Q Consensus 54 ~~~~~~~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~-------------~~~~~~~~~~~~~~~ 119 (607)
.++++.++|+|..++. ..++++++++++.++..++.+++++.++|.+.... ............+..
T Consensus 58 ~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1321)
T 4f4c_A 58 NKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMN 137 (1321)
T ss_dssp SCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHH
T ss_pred CCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHH
Confidence 4678999999877654 44456677777777777777888888887653110 000011122333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHH
Q 007337 120 TILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEA 199 (607)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~ 199 (607)
+++.++++.++..++.+++.+++.++++++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777778888899999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHH
Q 007337 200 LRNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNE 279 (607)
Q Consensus 200 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 279 (607)
+..+++++++++++++++|.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 280 ISRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYT 359 (607)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~ 359 (607)
.++|.+..++..+...+.....++...+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..++..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 377 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA 377 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCC-CCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 360 VAMKAAGASRRVFQLLDRVSSMPKSGN-QCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 360 ~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.++++.++++|+.++++.+++.+.... ..+..+..++|+|+||+|+||++++.++|+|+||+|++||++||||||||||
T Consensus 378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGK 457 (1321)
T 4f4c_A 378 VLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGK 457 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCH
T ss_pred HHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcH
Confidence 999999999999999998765433221 2222334578999999999998777899999999999999999999999999
Q ss_pred ------------------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHH
Q 007337 439 ------------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDF 482 (607)
Q Consensus 439 ------------------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~ 482 (607)
|+||+||||||+|||||||+||+| +++++++++||+.|++++|
T Consensus 458 STll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~-~~~~~~v~~a~~~a~l~~~ 536 (1321)
T 4f4c_A 458 STIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKE-GITREEMVAACKMANAEKF 536 (1321)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcc-cchHHHHHHHHHHccchhH
Confidence 999999999999999999999987 7999999999999999999
Q ss_pred HHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 007337 483 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 562 (607)
Q Consensus 483 i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l 562 (607)
|+.||+||||+|||+|.+||||||||||||||+|+||+||||||||||||+++|+.|+++|.+++++||+|+||||++++
T Consensus 537 i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i 616 (1321)
T 4f4c_A 537 IKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI 616 (1321)
T ss_dssp HHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT
T ss_pred HHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHhh
Q 007337 563 QSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 563 ~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~~ 600 (607)
++||+|+||++|+|+|+|+|+||++++|.|+++++.|.
T Consensus 617 ~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 617 RNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp TTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHH
T ss_pred HhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhh
Confidence 99999999999999999999999999999999998764
No 2
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-90 Score=772.85 Aligned_cols=532 Identities=26% Similarity=0.414 Sum_probs=484.5
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 61 VLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAW 140 (607)
Q Consensus 61 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (607)
++++++++++.+++++++.++..++.++.|++++.++|.+..... ...+..+.+.++++.++..++.+++.+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (587)
T 3qf4_A 14 LARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--------FSLVLKTGILMLIVALIGAVGGIGCTV 85 (587)
T ss_dssp GGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788899999999999999999999999999999998754321 223334455556666777788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 007337 141 LFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATSWKL 220 (607)
Q Consensus 141 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 220 (607)
+..+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++..++.+++++++++.++|.+
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 165 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKL 165 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 221 TLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQAKV 300 (607)
Q Consensus 221 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 300 (607)
++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+.
T Consensus 166 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 245 (587)
T 3qf4_A 166 SSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSL 245 (587)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007337 301 VGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSS 380 (607)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 380 (607)
......+..++..+..++++++|++++.+|.+++|.++++..+...+..|+..++..+..++++..+++|+.++++.+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 325 (587)
T 3qf4_A 246 IVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPA 325 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------
Q 007337 381 MPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------- 438 (607)
Q Consensus 381 ~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------- 438 (607)
..+.....+.++..+.|+++||+|+|++. ++++|+|+||+|++||++||||||||||
T Consensus 326 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 326 IEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred cCCCCCccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 43322222222345689999999999754 4679999999999999999999999999
Q ss_pred --------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 --------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 --------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++||||+|++|++||+|||.++.+ +.++++++++++.++++++++.+|+|++|.+||+|.+||||
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgG 483 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHH
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHH
Confidence 999999999999999999999986 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhH
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~e 584 (607)
||||++||||+++||+|+|||||||+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|+|+|+|
T Consensus 484 qrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HhhcCCchHHHHHHhhcC
Q 007337 585 LLSKGGVYTALVKRQLQE 602 (607)
Q Consensus 585 L~~~~g~y~~l~~~~~~~ 602 (607)
|+++++.|+++++.|...
T Consensus 564 l~~~~~~~~~~~~~~~~~ 581 (587)
T 3qf4_A 564 LLEHCKPYREIYESQFGN 581 (587)
T ss_dssp HHHHCHHHHHHHHHHC--
T ss_pred HHhCCcHHHHHHHHHhcc
Confidence 999999999999988643
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.9e-93 Score=851.73 Aligned_cols=542 Identities=35% Similarity=0.543 Sum_probs=463.6
Q ss_pred chHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 56 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 135 (607)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (607)
..+.+++.+.+++++.++++++++++........++++..+++.....+.... .....|.++++++.++..++.
T Consensus 738 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~i~~ 811 (1321)
T 4f4c_A 738 TNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFL------SQGHFWALMFLVLAAAQGICS 811 (1321)
T ss_dssp CCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTT------TTHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhh------hHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888888888888888888888887654332111 112234555666677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc--cCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 136 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV--TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM 213 (607)
Q Consensus 136 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l 213 (607)
+++.+++...+.++..++|.++|++++++|++||+. +++|+++||+++|++.+++.+...+..++..++.+++.++++
T Consensus 812 ~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~ 891 (1321)
T 4f4c_A 812 FLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLA 891 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeee
Confidence 899999999999999999999999999999999986 789999999999999999999998999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 007337 214 FATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKL 293 (607)
Q Consensus 214 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 293 (607)
++++|++++++++++|++++...++.++.++...+..+..++....+.|+++|+++||+|++|+.+.++|.+..+...+.
T Consensus 892 ~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~ 971 (1321)
T 4f4c_A 892 FFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKE 971 (1321)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888887777776666777777888888999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 294 GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGA--LTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRV 371 (607)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri 371 (607)
..+......+...+...+..+..++++++|++++..+..+.+. ++.++.+......|+..+...+..+.++..+.+|+
T Consensus 972 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri 1051 (1321)
T 4f4c_A 972 AIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGII 1051 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777788888888899999999888776654 34444444444567778888899999999999999
Q ss_pred HHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------
Q 007337 372 FQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------- 438 (607)
Q Consensus 372 ~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------- 438 (607)
.++++.+++.+......+.++..+.|+|+||+|+||++++.++|+|+||+|+|||+|||||||||||
T Consensus 1052 ~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p 1131 (1321)
T 4f4c_A 1052 FGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT 1131 (1321)
T ss_dssp HHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC
T ss_pred HHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC
Confidence 9999987765443333334455688999999999998767789999999999999999999999999
Q ss_pred -----------------------eEEEccCCCcccccHHHHhhcCC-CCCCCHHHHHHHHHHcCchHHHHhCCccccccc
Q 007337 439 -----------------------ISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFV 494 (607)
Q Consensus 439 -----------------------i~~V~Q~~~Lf~gTIreNI~~g~-~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~i 494 (607)
|+||||||+||+|||||||+||. |.+++|+++++||+.|++++||++||+||||+|
T Consensus 1132 ~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~v 1211 (1321)
T 4f4c_A 1132 LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRV 1211 (1321)
T ss_dssp SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEE
T ss_pred CCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEe
Confidence 99999999999999999999994 447899999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 007337 495 GERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 574 (607)
Q Consensus 495 ge~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G 574 (607)
||+|.+|||||||||||||||+|||+||||||||||||++||+.|+++|++.+++||+|+|||||+|+++||+|+|||+|
T Consensus 1212 ge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G 1291 (1321)
T 4f4c_A 1212 GDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNG 1291 (1321)
T ss_dssp TTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSS
T ss_pred cCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEecChhHHhhcCCchHHHHHHhhcCC
Q 007337 575 EIVESGTHEELLSKGGVYTALVKRQLQEP 603 (607)
Q Consensus 575 ~Ive~G~~~eL~~~~g~y~~l~~~~~~~~ 603 (607)
+|+|+|+|+||++++|.|++|++.|..++
T Consensus 1292 ~IvE~Gth~eLl~~~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1292 TIIEKGTHTQLMSEKGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp SEEEEECHHHHHHCC--------------
T ss_pred EEEEECCHHHHHhCCcHHHHHHHHHHhcc
Confidence 99999999999999999999999887654
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=7.3e-90 Score=766.30 Aligned_cols=539 Identities=36% Similarity=0.536 Sum_probs=489.1
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 58 FGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTAL 137 (607)
Q Consensus 58 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (607)
+++++++++++++.++.+++++++..++.++.|++++.++|.+....... ...........+++.++++.++..++.++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT-TDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999886532210 00101111133444555666777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 138 RAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFATS 217 (607)
Q Consensus 138 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 217 (607)
+.++..+++.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++.+++++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988878888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Q 007337 218 WKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQQ 297 (607)
Q Consensus 218 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 297 (607)
|++++++++++|+++++..++.++.++..++..+..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007337 298 AKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDR 377 (607)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~ 377 (607)
.+.......+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..++..+..++++..+++|+.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------
Q 007337 378 VSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------- 438 (607)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------- 438 (607)
+++..+.....+.++..+.|+++||+|+|++. ++++|+|+||+|++||++||||||||||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 399 (578)
T 4a82_A 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399 (578)
T ss_dssp CCSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEE
T ss_pred CCcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence 76543322222223345689999999999864 4579999999999999999999999999
Q ss_pred -----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 439 -----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 439 -----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
++||||+|++|++||+|||.+|.+ +.++++++++++.++++++++.+|+|+||.+||+|.+|
T Consensus 400 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 400 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp ETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred ECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 899999999999999999999986 68899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecC
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~ 581 (607)
|||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|+|+
T Consensus 479 SgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 558 (578)
T 4a82_A 479 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGT 558 (578)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred hhHHhhcCCchHHHHHHh
Q 007337 582 HEELLSKGGVYTALVKRQ 599 (607)
Q Consensus 582 ~~eL~~~~g~y~~l~~~~ 599 (607)
|+||+++++.|+++++.|
T Consensus 559 ~~el~~~~~~~~~~~~~q 576 (578)
T 4a82_A 559 HRELIAKQGAYEHLYSIQ 576 (578)
T ss_dssp HHHHHHTTSHHHHHHTTT
T ss_pred HHHHHhCCcHHHHHHHhh
Confidence 999999999999999766
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6e-90 Score=769.34 Aligned_cols=537 Identities=32% Similarity=0.515 Sum_probs=492.8
Q ss_pred cchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 55 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 134 (607)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (607)
...+++++++++++++.++.++++.++..++.++.|++++.++|.+..... ...+..++++++++.++..++
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 93 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--------FDLLPRYMLILGTIYALTSLL 93 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--------GGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------HHHHHHHHHHHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999998764321 112334455666667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 135 TALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMF 214 (607)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 214 (607)
.+++.++..+++.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++.+++++++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~ 173 (598)
T 3qf4_B 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMF 173 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q 007337 215 ATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLG 294 (607)
Q Consensus 215 ~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 294 (607)
.++|++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 174 ~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 253 (598)
T 3qf4_B 174 RVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVG 253 (598)
T ss_dssp HHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 295 LQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQL 374 (607)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~ 374 (607)
.+..+.......+..++..+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+++|+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~ 333 (598)
T 3qf4_B 254 TKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEI 333 (598)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------
Q 007337 375 LDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------- 438 (607)
Q Consensus 375 l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------- 438 (607)
++.+++..... ..+.++..+.|+++||+|+|++ ++++|+|+||+|++||++||||||||||
T Consensus 334 l~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 334 LDLEEEKDDPD-AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp TTSCCCCCCSS-CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred HcCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 98876543221 1222334568999999999974 3579999999999999999999999999
Q ss_pred --------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCC
Q 007337 439 --------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 498 (607)
Q Consensus 439 --------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G 498 (607)
++||||+|++|++||+|||.++++ ..++++++++++.++++++++.+|+|++|.+||+|
T Consensus 411 ~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g 489 (598)
T 3qf4_B 411 QILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG 489 (598)
T ss_dssp EEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHH
T ss_pred EEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCC
Confidence 999999999999999999999986 67889999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeE
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 578 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive 578 (607)
.+|||||||||+||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 569 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVE 569 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCCchHHHHHHhhcCC
Q 007337 579 SGTHEELLSKGGVYTALVKRQLQEP 603 (607)
Q Consensus 579 ~G~~~eL~~~~g~y~~l~~~~~~~~ 603 (607)
+|+|+||++++|.|++++..|....
T Consensus 570 ~g~~~~l~~~~~~~~~~~~~~~~~~ 594 (598)
T 3qf4_B 570 MGKHDELIQKRGFYYELFTSQYGLV 594 (598)
T ss_dssp CSCHHHHHHTTCHHHHHHHHHHGGG
T ss_pred ECCHHHHHhCCCHHHHHHHHHhhhh
Confidence 9999999999999999999886543
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.1e-87 Score=743.34 Aligned_cols=533 Identities=32% Similarity=0.498 Sum_probs=485.2
Q ss_pred chHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 56 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 135 (607)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (607)
..+++++++.+++++.++.++++.++..++.++.|++++.++|.+..... ...+..+++.++++.++..++.
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 82 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--------SNFLRILPFMILGLMFVRGLSG 82 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888999998889999999999999999999999998753211 1122223333555667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 136 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 215 (607)
Q Consensus 136 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 215 (607)
+++.++..+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++..++.++++++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 162 (582)
T 3b5x_A 83 FASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFW 162 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 007337 216 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGL 295 (607)
Q Consensus 216 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 295 (607)
++|++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...
T Consensus 163 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 242 (582)
T 3b5x_A 163 NSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTM 242 (582)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 296 QQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 375 (607)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l 375 (607)
+..+.......+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..+...+..++++..+++|+.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l 322 (582)
T 3b5x_A 243 KLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLM 322 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------
Q 007337 376 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------- 438 (607)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------- 438 (607)
+.+++.++.. .+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++||||||||||
T Consensus 323 ~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 399 (582)
T 3b5x_A 323 DLETERDNGK--YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS 399 (582)
T ss_pred cCCCcCCCCC--CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 8765432211 1112234679999999999753 2579999999999999999999999999
Q ss_pred -------------------eEEEccCCCcccccHHHHhhcCC-CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCC
Q 007337 439 -------------------ISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 498 (607)
Q Consensus 439 -------------------i~~V~Q~~~Lf~gTIreNI~~g~-~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G 498 (607)
++||||+|++|++||+|||.++. + +.++++++++++.++++++++.+|+||||.+||+|
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~ 478 (582)
T 3b5x_A 400 ICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEG-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENG 478 (582)
T ss_pred EEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCC-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCC
Confidence 89999999999999999999986 4 57889999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeE
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 578 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive 578 (607)
.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIE 558 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCCchHHHHHHhh
Q 007337 579 SGTHEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 579 ~G~~~eL~~~~g~y~~l~~~~~ 600 (607)
.|+|+||+++++.|+++++.|.
T Consensus 559 ~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 559 RGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred ECCHHHHHhCCcHHHHHHHHhh
Confidence 9999999999999999999874
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-86 Score=743.54 Aligned_cols=542 Identities=46% Similarity=0.713 Sum_probs=469.8
Q ss_pred hHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 57 GFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTA 136 (607)
Q Consensus 57 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (607)
.+++++++.+++++.++.++++.++..++.++.|++++.++|.+........ ...+..+++.++++.++..++.+
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 80 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDY-----SDNLTRLCLGLSAVFLCGAAANA 80 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCC-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh-----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999999999999999999999998753211000 01122334444555666777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 137 LRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFAT 216 (607)
Q Consensus 137 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 216 (607)
++.++..+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++.+...+..++..++.+++.+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 160 (595)
T 2yl4_A 81 IRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFV 160 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 007337 217 SWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGLQ 296 (607)
Q Consensus 217 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 296 (607)
+|++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 161 ~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 240 (595)
T 2yl4_A 161 SPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARK 240 (595)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007337 297 QAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLD 376 (607)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~ 376 (607)
..+.......+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..+...+..++++..+++|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~ 320 (595)
T 2yl4_A 241 EAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLE 320 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888888888999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCc-EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------
Q 007337 377 RVSSMPKSGNQCPLGDQDGE-VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------- 438 (607)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~-I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------- 438 (607)
.+++.++.....+..+..+. |+++||+|+|+++++.++|+|+||+|++||++||||||||||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 400 (595)
T 2yl4_A 321 REPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGT 400 (595)
T ss_dssp CCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEE
T ss_pred CCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence 76543322111111223467 999999999975433579999999999999999999999999
Q ss_pred -------------------eEEEccCCCcccccHHHHhhcCCCC--CCCHHHHHHHHHHcCchHHHHhCCccccccccCC
Q 007337 439 -------------------ISIVSQEPVLFNCSIEENIAYGCDG--KASSADIENAAKMANAHDFISNFPEKYQTFVGER 497 (607)
Q Consensus 439 -------------------i~~V~Q~~~Lf~gTIreNI~~g~~~--~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~ 497 (607)
++||||+|++|++||+|||.++.+. ..++++++++++.++++++++.+|+|+||.+||+
T Consensus 401 i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~ 480 (595)
T 2yl4_A 401 ISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEK 480 (595)
T ss_dssp EEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS
T ss_pred EEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCC
Confidence 8999999999999999999998752 1688999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEe
Q 007337 498 GVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIV 577 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Iv 577 (607)
|.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+
T Consensus 481 ~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 481 GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKIT 560 (595)
T ss_dssp SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EecChhHHhh-cCCchHHHHHHhhcCC
Q 007337 578 ESGTHEELLS-KGGVYTALVKRQLQEP 603 (607)
Q Consensus 578 e~G~~~eL~~-~~g~y~~l~~~~~~~~ 603 (607)
|.|+|+||++ .++.|+++++.|....
T Consensus 561 ~~g~~~~l~~~~~~~~~~~~~~q~~~~ 587 (595)
T 2yl4_A 561 EYGKHEELLSKPNGIYRKLMNKQSFIS 587 (595)
T ss_dssp EEECSCC------C-------------
T ss_pred EECCHHHHHhCCChHHHHHHHHhhccc
Confidence 9999999998 4899999998876543
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=8e-87 Score=742.97 Aligned_cols=533 Identities=33% Similarity=0.508 Sum_probs=485.1
Q ss_pred chHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 56 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 135 (607)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (607)
..+++++++.+++++.++.++++.++..++.++.|++++.++|.+..... ...+..+++.++++.++..++.
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 82 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--------RSVLLWMPLVVIGLMILRGITS 82 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--------HHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999989999999999999999999999997653211 1122223333555667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 136 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFMFA 215 (607)
Q Consensus 136 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 215 (607)
+++.++..+++.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++..++.+++.+++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 162 (582)
T 3b60_A 83 YISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFY 162 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q 007337 216 TSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKLGL 295 (607)
Q Consensus 216 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 295 (607)
++|++++++++++|+++++..++.++.++..++..+..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...
T Consensus 163 ~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~ 242 (582)
T 3b60_A 163 YSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGM 242 (582)
T ss_dssp HTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007337 296 QQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLL 375 (607)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l 375 (607)
+..+...+...+..++..+..++++++|++++.+|.+|+|.+++++.+...+..|+..++..+..++++..+++|+.+++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l 322 (582)
T 3b60_A 243 KMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAIL 322 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------
Q 007337 376 DRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------- 438 (607)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------- 438 (607)
+.+++.++.. .+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++||||||||||
T Consensus 323 ~~~~~~~~~~--~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 399 (582)
T 3b60_A 323 DSEQEKDEGK--RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH 399 (582)
T ss_dssp HSCCSCCCCC--BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred cCCCCccCCC--CCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence 8766533211 1112234679999999999743 2579999999999999999999999999
Q ss_pred -------------------eEEEccCCCcccccHHHHhhcCC-CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCC
Q 007337 439 -------------------ISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 498 (607)
Q Consensus 439 -------------------i~~V~Q~~~Lf~gTIreNI~~g~-~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G 498 (607)
++||||+|++|++||+|||.++. + +.++++++++++.++++++++++|+|+||.+||+|
T Consensus 400 i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~ 478 (582)
T 3b60_A 400 ILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478 (582)
T ss_dssp EEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTS
T ss_pred EEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCC
Confidence 89999999999999999999986 4 57899999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeE
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVE 578 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive 578 (607)
.+||||||||++||||++++|+|+|||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|++
T Consensus 479 ~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 558 (582)
T 3b60_A 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVE 558 (582)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ecChhHHhhcCCchHHHHHHhh
Q 007337 579 SGTHEELLSKGGVYTALVKRQL 600 (607)
Q Consensus 579 ~G~~~eL~~~~g~y~~l~~~~~ 600 (607)
.|+|+||+++++.|+++++.|.
T Consensus 559 ~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 559 RGTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp EECHHHHHHHTSSHHHHHHHTC
T ss_pred ecCHHHHHHcCCHHHHHHHHhc
Confidence 9999999999999999998874
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.3e-85 Score=786.11 Aligned_cols=547 Identities=36% Similarity=0.536 Sum_probs=487.5
Q ss_pred ccchHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-------CCc-h----hHHHHHHHHHHH
Q 007337 54 ANVGFGRVLALAKP-DAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDT-------ETP-E----QKAEALAAVRST 120 (607)
Q Consensus 54 ~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~-------~~~-~----~~~~~~~~~~~~ 120 (607)
....+.+++++..+ ++..++++++++++..++.++.|++++.++|.+.... ... . ........+..+
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp --CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 34567788888754 5666778888888999999999999999998764210 000 0 000111233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccCchHHHHHHHHhHHHHHHHHHHHHHHHH
Q 007337 121 ILSIFLIVIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDVTRTGELLSRLSEDTQIIKNAATTNLSEAL 200 (607)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~~r~~~d~~~i~~~~~~~~~~~~ 200 (607)
++.++++.++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++.+...+..++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~ 190 (1284)
T 3g5u_A 111 AYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFF 190 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHH
Q 007337 201 RNLSTAFIGLGFMFATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEI 280 (607)
Q Consensus 201 ~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 280 (607)
..++++++++++++.++|++++++++++|+++++..++.++.++..++.++..++..+.+.|+++|+++||+|++|+.+.
T Consensus 191 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~ 270 (1284)
T 3g5u_A 191 QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 281 SRYSEKVDETLKLGLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTV 360 (607)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~ 360 (607)
++|.+..++..+...+..+..++..++..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1284)
T 3g5u_A 271 ERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEA 350 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888999999999999999999999998888888888999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCC-CCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-
Q 007337 361 AMKAAGASRRVFQLLDRVSSMPKS-GNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK- 438 (607)
Q Consensus 361 ~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK- 438 (607)
++++..+++|+.++++.+++.+.. ....++++..+.|+|+||+|+|+++++.++|+|+||+|++||++||||||||||
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKS 430 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKS 430 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHH
Confidence 999999999999999887654321 111122234578999999999987545689999999999999999999999999
Q ss_pred -----------------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHH
Q 007337 439 -----------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFI 483 (607)
Q Consensus 439 -----------------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i 483 (607)
|+||||||+||++||+|||.+|.+ +.++++++++++.|++++++
T Consensus 431 Tl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~-~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE-DVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCS-SCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCC-CCCHHHHHHHHHHhCcHHHH
Confidence 899999999999999999999986 78999999999999999999
Q ss_pred HhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh
Q 007337 484 SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 484 ~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~ 563 (607)
+.+|+||||.+||+|.+|||||||||+||||++++|+||||||||||||+++|+.+++++++..+++|+|+||||+++++
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred hcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHhhc
Q 007337 564 SADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 601 (607)
Q Consensus 564 ~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~~~ 601 (607)
+||+|+||++|+|+|+|+|+||+++++.|++++..|..
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 627 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTA 627 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC-
T ss_pred cCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999976643
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.5e-79 Score=733.92 Aligned_cols=543 Identities=33% Similarity=0.508 Sum_probs=482.3
Q ss_pred chHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 56 VGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCT 135 (607)
Q Consensus 56 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (607)
..+.+++++.+++++.++++++++++..++.++.|++++.+++.+....... . .......+.+.++++.++..++.
T Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~l~i~~~~~~ 766 (1284)
T 3g5u_A 691 ASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPE-T---QRQNSNLFSLLFLILGIISFITF 766 (1284)
T ss_dssp CCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT-H---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcch-h---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888889999999999999999999998776432211 1 11222334455566666777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcc--cCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 136 ALRAWLFSSASERVVARLRKNLFSHLINQEIAFYDV--TRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLGFM 213 (607)
Q Consensus 136 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l 213 (607)
+++.+++.+.+.++..++|.++|++++++|+.||++ +++|++++|+++|++.+++.+...+..++..++.+++.++++
T Consensus 767 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~ 846 (1284)
T 3g5u_A 767 FLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIIS 846 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999994 789999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHH
Q 007337 214 FATSWKLTLLALVVVPAISVAVRKFGRFLRELSHKTQAAAATAASIAEESFGAIRTVRSFAQEKNEISRYSEKVDETLKL 293 (607)
Q Consensus 214 ~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 293 (607)
+.++|.+++++++++|+++++..+..+..++...+..+..+.....+.|+++|+++||+|++|+.+.++|.+..+...+.
T Consensus 847 ~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~ 926 (1284)
T 3g5u_A 847 LIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRN 926 (1284)
T ss_dssp HSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888888888888888889999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 294 GLQQAKVVGLFFGGLNAASTLSVIVVVIYGANLTITGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQ 373 (607)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~ 373 (607)
..+.....+....+...+..+..++++++|++++..|.++++.++.++.+......|+..+...+..+.++..+.+|+.+
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 1006 (1284)
T 3g5u_A 927 AMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIR 1006 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888889999999999999999999999999888888888998888888888999999999999
Q ss_pred HhccCCCCCCCC-CCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------
Q 007337 374 LLDRVSSMPKSG-NQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------- 438 (607)
Q Consensus 374 ~l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------- 438 (607)
+++.+++..... ...++++..+.|+++||+|+|+++++.++|+|+||+|++||++||||||||||
T Consensus 1007 ~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1007 IIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp HHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred HHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 998866543211 11122234578999999999986545579999999999999999999999999
Q ss_pred ----------------------eEEEccCCCcccccHHHHhhcCCCC-CCCHHHHHHHHHHcCchHHHHhCCcccccccc
Q 007337 439 ----------------------ISIVSQEPVLFNCSIEENIAYGCDG-KASSADIENAAKMANAHDFISNFPEKYQTFVG 495 (607)
Q Consensus 439 ----------------------i~~V~Q~~~Lf~gTIreNI~~g~~~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ig 495 (607)
++||||||.+|++||+|||.++.+. ..++++++++++.++++++++.+|+||||.||
T Consensus 1087 ~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1087 AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred CCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccC
Confidence 8999999999999999999998652 36899999999999999999999999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCE
Q 007337 496 ERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGE 575 (607)
Q Consensus 496 e~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~ 575 (607)
|+|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++++.||+|+||++|+
T Consensus 1167 e~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~ 1246 (1284)
T 3g5u_A 1167 DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGK 1246 (1284)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBE
T ss_pred CCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EeEecChhHHhhcCCchHHHHHHhhcC
Q 007337 576 IVESGTHEELLSKGGVYTALVKRQLQE 602 (607)
Q Consensus 576 Ive~G~~~eL~~~~g~y~~l~~~~~~~ 602 (607)
|+|.|+|+||++++|.|++|++.|...
T Consensus 1247 i~~~g~~~~l~~~~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1247 VKEHGTHQQLLAQKGIYFSMVSVQAGA 1273 (1284)
T ss_dssp EEEEECHHHHHHSCSHHHHHHHHHC--
T ss_pred EEEECCHHHHHhCCCHHHHHHHHHhhc
Confidence 999999999999999999999987643
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=5.6e-61 Score=487.96 Aligned_cols=242 Identities=44% Similarity=0.700 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCc
Q 007337 358 YTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGG 437 (607)
Q Consensus 358 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsG 437 (607)
+..++++.++++|++++++.+++........+.+...+.|+++||+|+|++ ..++|+||||+|++||++|||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 456677889999999999876543322222222233467999999999974 347999999999999999999999999
Q ss_pred c------------------------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchH
Q 007337 438 K------------------------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHD 481 (607)
Q Consensus 438 K------------------------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~ 481 (607)
| |+||+|+|++|++||+|||.++.+ ..++++++++++.+++++
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcHH
Confidence 9 999999999999999999999976 688999999999999999
Q ss_pred HHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 007337 482 FISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 561 (607)
Q Consensus 482 ~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~ 561 (607)
++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||+++
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred hhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHhhcC
Q 007337 562 VQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQE 602 (607)
Q Consensus 562 l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~~~~ 602 (607)
+..||+|+||++|+|++.|+|+||++.++.|+++++.|...
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~~ 292 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQ 292 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHCC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999987653
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.8e-49 Score=390.51 Aligned_cols=203 Identities=48% Similarity=0.743 Sum_probs=190.4
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..|+++||+|+|++. +.++|+|+||+|++||++||+|||||||
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999532 3469999999999999999999999999
Q ss_pred eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcC
Q 007337 439 ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMN 518 (607)
Q Consensus 439 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~ 518 (607)
|+||+|+|.+|+.|++|||.++.+ ..+++++.++++.+++.+++..+|.|+++.+++++.+||||||||++|||||+++
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCccccccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 899999999999999999999864 5678889999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhc-CCchHHHHH
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSK-GGVYTALVK 597 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~-~g~y~~l~~ 597 (607)
|+++|||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++|+++. .+.|++++.
T Consensus 164 p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 164 PKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 9999999999999999999999999988778999999999999999999999999999999999999987 888999887
Q ss_pred Hh
Q 007337 598 RQ 599 (607)
Q Consensus 598 ~~ 599 (607)
.|
T Consensus 244 ~~ 245 (247)
T 2ff7_A 244 LQ 245 (247)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=7.6e-49 Score=392.08 Aligned_cols=206 Identities=46% Similarity=0.776 Sum_probs=192.5
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------e
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------I 439 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i 439 (607)
..|+++|++|+|++....++|+|+||+|++||+++|+||||||| |
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTE
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccE
Confidence 35999999999975322469999999999999999999999999 8
Q ss_pred EEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 440 SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 440 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
+||+|+|.+|+.|++|||.++.. ..+++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999854 45678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHh
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~ 599 (607)
+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++++++..+.|.+++..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999999877899999999999999999999999999999999999998889999999877
Q ss_pred hc
Q 007337 600 LQ 601 (607)
Q Consensus 600 ~~ 601 (607)
..
T Consensus 255 ~~ 256 (260)
T 2ghi_A 255 SG 256 (260)
T ss_dssp HC
T ss_pred hh
Confidence 54
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.6e-47 Score=384.55 Aligned_cols=206 Identities=47% Similarity=0.767 Sum_probs=187.8
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
+.|+++||+|+|++..+.++|+|+||+|++||+++|+|||||||
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975212579999999999999999999999999
Q ss_pred eEEEccCCCcccccHHHHhhcCCCCCCCH-HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 ISIVSQEPVLFNCSIEENIAYGCDGKASS-ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~-~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
|+||+|+|.+|+.|++|||.++.+ ..++ +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999854 3343 66788889999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHH
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 595 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l 595 (607)
+|+|||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 253 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM 253 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHH
Confidence 9999999999999999999999999998754 79999999999999899999999999999999999999888999999
Q ss_pred HHHhhc
Q 007337 596 VKRQLQ 601 (607)
Q Consensus 596 ~~~~~~ 601 (607)
+..+..
T Consensus 254 ~~~~~~ 259 (271)
T 2ixe_A 254 VEALAA 259 (271)
T ss_dssp HHC---
T ss_pred HHHhhc
Confidence 877643
No 15
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-48 Score=385.98 Aligned_cols=201 Identities=48% Similarity=0.760 Sum_probs=188.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------eE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------IS 440 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i~ 440 (607)
|+++|++|+|++ +.++|+|+||+|++||+++|+||||||| ++
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 3469999999999999999999999999 89
Q ss_pred EEccCCCcccccHHHHhhcC-CCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 441 IVSQEPVLFNCSIEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 441 ~V~Q~~~Lf~gTIreNI~~g-~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
||||+|.+|++|++|||.++ .+ ..++++++++++.+++.+++..+|.|++|.+++.+.+||||||||++|||||+++|
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p 158 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEG-DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP 158 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTS-CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEcCCCccccccHHHHHhhhccC-CCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998 43 56788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHh
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQ 599 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~ 599 (607)
+++|||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|++++..+
T Consensus 159 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 238 (243)
T 1mv5_A 159 KILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (243)
T ss_dssp SEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhh
Confidence 99999999999999999999999998777899999999999999999999999999999999999998888888888765
Q ss_pred h
Q 007337 600 L 600 (607)
Q Consensus 600 ~ 600 (607)
.
T Consensus 239 ~ 239 (243)
T 1mv5_A 239 L 239 (243)
T ss_dssp C
T ss_pred h
Confidence 4
No 16
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.8e-47 Score=374.75 Aligned_cols=203 Identities=31% Similarity=0.525 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------eEEEccCCCccccc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFNCS 452 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~~~Lf~gT 452 (607)
.|+++|++|+|+.. +.++|+|+||+|++||+++|+||||||| ++||+|+|++|+.|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCCCcCCCcC
Confidence 38999999999642 3579999999999999999999999999 79999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCC
Q 007337 453 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 532 (607)
Q Consensus 453 IreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD 532 (607)
++|||.++.. .++++..++++.+++.+++..+|.|++|.+++++.+||||||||++|||||+++|+|+|||||||+||
T Consensus 82 v~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD 159 (237)
T 2cbz_A 82 LRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159 (237)
T ss_dssp HHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred HHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence 9999999853 34456778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH---HhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHhhc
Q 007337 533 AESEYLVQDAMD---SLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 601 (607)
Q Consensus 533 ~~te~~i~~~l~---~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~~~ 601 (607)
+.+++.+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++.|+++++++..+.|.+++..|..
T Consensus 160 ~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 231 (237)
T 2cbz_A 160 AHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYAS 231 (237)
T ss_dssp HHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHHHHHh
Confidence 999999999984 444689999999999999999999999999999999999999999999999887643
No 17
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.2e-47 Score=371.02 Aligned_cols=199 Identities=29% Similarity=0.442 Sum_probs=180.0
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------eEEEccCCCcccc
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFNC 451 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~~~Lf~g 451 (607)
+.|+++|++|+|+.. +.++|+|+||+|++||++||+||||||| ++||||+|++|++
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCCCSB
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcccCC
Confidence 369999999999743 3579999999999999999999999999 8999999999999
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 007337 452 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531 (607)
Q Consensus 452 TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL 531 (607)
|++|||.++.. ..+.++.++++.+++.+++..+|.+++|.+++++.+||||||||++|||||+++|+++|||||||+|
T Consensus 84 tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~L 161 (229)
T 2pze_A 84 TIKENIIFGVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 161 (229)
T ss_dssp CHHHHHHTTSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTS
T ss_pred CHHHHhhccCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCC
Confidence 99999999843 4556677888999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH-HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHH
Q 007337 532 DAESEYLVQDAM-DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALV 596 (607)
Q Consensus 532 D~~te~~i~~~l-~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~ 596 (607)
|+.+++.+.+.+ .++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|.+++
T Consensus 162 D~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 227 (229)
T 2pze_A 162 DVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKL 227 (229)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHh
Confidence 999999999874 55556899999999999998999999999999999999999988777777654
No 18
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-46 Score=391.17 Aligned_cols=194 Identities=23% Similarity=0.429 Sum_probs=182.6
Q ss_pred CCCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------
Q 007337 393 QDGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------- 438 (607)
Q Consensus 393 ~~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------- 438 (607)
..+.|+++||+++|+.. +.++|+||||+|++||+++|+|||||||
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhC
Confidence 34579999999999643 4579999999999999999999999999
Q ss_pred -eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 -ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 -i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
++||+|++.+|+.|++|||.+.. ...+++++++++.+++.+++..+|.+++|.++++|.+||||||||++|||||++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 89999999999999999998763 457889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
+|++||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||+|+||++|+|++.|+++|+++..
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p 244 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYP 244 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCC
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999887789999999999999999999999999999999999998753
No 19
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2e-43 Score=357.21 Aligned_cols=193 Identities=28% Similarity=0.435 Sum_probs=160.5
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------eEEEccCCCcccc
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLFNC 451 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~~~Lf~g 451 (607)
+.|+++|++|.| .++|+|+||+|++||++||+||||||| ++||||+|.+|++
T Consensus 39 ~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~~l~~~ 113 (290)
T 2bbs_A 39 DSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPG 113 (290)
T ss_dssp -----------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSCCCCSS
T ss_pred ceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCCccCcc
Confidence 469999999964 259999999999999999999999999 8999999999999
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 007337 452 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531 (607)
Q Consensus 452 TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL 531 (607)
|++|||. +. ...+.++.++++.+++.+++..+|.+++|.+++.+.+||||||||++|||||+++|+++|||||||+|
T Consensus 114 tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~L 190 (290)
T 2bbs_A 114 TIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (290)
T ss_dssp BHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred cHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccC
Confidence 9999998 63 34456677888999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHH-HHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHH
Q 007337 532 DAESEYLVQDAM-DSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTAL 595 (607)
Q Consensus 532 D~~te~~i~~~l-~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l 595 (607)
|+.++..+.+.+ +++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|...
T Consensus 191 D~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 255 (290)
T 2bbs_A 191 DVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSK 255 (290)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHHH
Confidence 999999999874 4444689999999999999999999999999999999999997655555443
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.2e-42 Score=354.83 Aligned_cols=183 Identities=32% Similarity=0.488 Sum_probs=157.8
Q ss_pred CcEEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 395 GEVELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
.-|+++|++++|+... ..++|+||||+|++||++||+|||||||
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4599999999997431 2468999999999999999999999999
Q ss_pred ----eEEEccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ----ISIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ----i~~V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
|+||+|++.+|+. |++|||.++.. ...+ ++++.++++.+++.+.... ...+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~-----------~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDS-----------YPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC-----------CTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcC-----------ChhhCCHHHHHH
Confidence 8999999999865 99999988521 0122 3457778888887665433 346899999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHH
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL 585 (607)
++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999998874 38999999999999864 999999999999999999999
Q ss_pred hhc
Q 007337 586 LSK 588 (607)
Q Consensus 586 ~~~ 588 (607)
+..
T Consensus 252 ~~~ 254 (366)
T 3tui_C 252 FSH 254 (366)
T ss_dssp HSS
T ss_pred HhC
Confidence 875
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.2e-41 Score=341.65 Aligned_cols=182 Identities=30% Similarity=0.506 Sum_probs=156.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++|+|++. .++|+||||+|++||+++|+|||||||
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999743 359999999999999999999999999
Q ss_pred -eEEEccCC--CcccccHHHHhhcCCC-CCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 439 -ISIVSQEP--VLFNCSIEENIAYGCD-GKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 -i~~V~Q~~--~Lf~gTIreNI~~g~~-~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
|+||+|+| .+|+.|++|||.++.. ...+. +++.++++.+++.+... ....+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHHH
Confidence 89999998 5889999999988631 01232 34667777777755432 344679999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhh
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++|+++
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999998875 3899999999999986 599999999999999999999987
Q ss_pred cCC
Q 007337 588 KGG 590 (607)
Q Consensus 588 ~~g 590 (607)
...
T Consensus 234 ~~~ 236 (275)
T 3gfo_A 234 EKE 236 (275)
T ss_dssp HHH
T ss_pred CHH
Confidence 543
No 22
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.1e-42 Score=337.14 Aligned_cols=180 Identities=32% Similarity=0.443 Sum_probs=150.4
Q ss_pred EEEEeEEEECCCCC-CCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 397 VELDDVWFAYPSRP-NHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~-~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
|+++|++|+|+... ..++|+|+||+|++||++||+|||||||
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2369999999999999999999999999
Q ss_pred ---eEEEccCCCcccc-cHHHHhhcCCC----CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 439 ---ISIVSQEPVLFNC-SIEENIAYGCD----GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 439 ---i~~V~Q~~~Lf~g-TIreNI~~g~~----~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
++||+|+|.+|+. |++||+.++.. ...+ .+++.++++.+++.+.. .......||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 8999999999987 99999987410 0122 23455666666664321 1345678999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEE 584 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~e 584 (607)
||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988753 899999999999888999999999999999998877
Q ss_pred Hh
Q 007337 585 LL 586 (607)
Q Consensus 585 L~ 586 (607)
+.
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.5e-41 Score=331.02 Aligned_cols=184 Identities=29% Similarity=0.469 Sum_probs=154.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|||||||
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999
Q ss_pred eEEEccCCCcccc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 439 ISIVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 439 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
++||+|++.+|.+ |++||+.++.....+.++..+.++ +.++.++ |++........+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 8999999999987 999999987411122222222222 2344443 45555667788999999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 589999999999775 57999999999999999999998753
No 24
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-40 Score=343.86 Aligned_cols=180 Identities=31% Similarity=0.521 Sum_probs=156.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+||||+|++||+++|+|||||||
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 469999999999999999999999999
Q ss_pred -eEEEccCCCccc-ccHHHHhhcCCCC-CC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH
Q 007337 439 -ISIVSQEPVLFN-CSIEENIAYGCDG-KA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI 511 (607)
Q Consensus 439 -i~~V~Q~~~Lf~-gTIreNI~~g~~~-~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial 511 (607)
|+||+|++.+|+ -|++|||.|+... .. .++++.++++.+++.++.... ..+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~-----------~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRY-----------PHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSC-----------GGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHH
Confidence 899999999996 5999999997420 11 234677888888887654443 35799999999999
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||||+.+|++||||||||+||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.+.
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776653 4899999999998775 5999999999999999999999875
Q ss_pred C
Q 007337 589 G 589 (607)
Q Consensus 589 ~ 589 (607)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 3
No 25
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.8e-40 Score=329.10 Aligned_cols=182 Identities=30% Similarity=0.476 Sum_probs=158.7
Q ss_pred EEEEeEEEECCCCCC--CcccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEE
Q 007337 397 VELDDVWFAYPSRPN--HMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISI 441 (607)
Q Consensus 397 I~~~~vsf~y~~~~~--~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~ 441 (607)
|+++|++++|+.... .++|+|+||+|++||+++|+||||||| ++|
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~ 82 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEE
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEE
Confidence 799999999962211 469999999999999999999999999 699
Q ss_pred EccCC--CcccccHHHHhhcCCC----CCCCHHHHHHHHHHcCch--HHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 442 VSQEP--VLFNCSIEENIAYGCD----GKASSADIENAAKMANAH--DFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 442 V~Q~~--~Lf~gTIreNI~~g~~----~~~~~~~i~~al~~a~l~--~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
|+|+| .+++.|++|||.++.. ....++++.++++.+++. ++....| .+||||||||++|||
T Consensus 83 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~lAr 151 (266)
T 2yz2_A 83 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIAS 151 (266)
T ss_dssp ECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHHHHH
Confidence 99996 5788999999998632 112356788999999997 6655443 579999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhcC
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
||+++|+|+|||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 152 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 152 VIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred HHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence 9999999999999999999999999999998874 48999999999999875 9999999999999999999997653
No 26
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.8e-40 Score=344.89 Aligned_cols=180 Identities=33% Similarity=0.505 Sum_probs=156.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++|++++|++ .++|+||||+|++||+++|+||||||| |+|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 4899999999963 469999999999999999999999999 899
Q ss_pred EccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+|+. |++|||.|+.. ...+ ++++.++++.+++.++.... ..+||||||||++|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCC-----------GGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhHCCHHHHHHHHHHHHH
Confidence 9999999965 99999998621 0122 34577888888877654433 357999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|+||++|+|++.|+++|+.+..
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999999999988743 799999999998764 69999999999999999999998753
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.5e-40 Score=327.17 Aligned_cols=180 Identities=33% Similarity=0.500 Sum_probs=156.3
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------e
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------I 439 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i 439 (607)
+.|+++|++++|++ .++|+|+||+|++||+++|+||||||| +
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 35999999999963 469999999999999999999999999 8
Q ss_pred EEEccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 440 SIVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 440 ~~V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
+||||++.+|.. |++||+.++.. ...+ ++++.++++.+++.++.. ....+||||||||++|||
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHHH
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHHH
Confidence 999999999877 99999987521 0122 245777888888765432 234679999999999999
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHhhc
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
||+++|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999999998874 47999999999999876 999999999999999999999753
No 28
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.3e-40 Score=329.16 Aligned_cols=180 Identities=35% Similarity=0.489 Sum_probs=155.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++|+|++ .++|+|+||+|++||++||+|||||||
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999963 469999999999999999999999999
Q ss_pred -eEEEccCCCcccc-cHHHHhhcCC--CCCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHH
Q 007337 439 -ISIVSQEPVLFNC-SIEENIAYGC--DGKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVA 510 (607)
Q Consensus 439 -i~~V~Q~~~Lf~g-TIreNI~~g~--~~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRia 510 (607)
++||+|++.+|+. |++|||.++. ....+ ++++.++++.+++.++. .....+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHHH
Confidence 6899999999976 9999998852 11122 34567778887776543 2345689999999999
Q ss_pred HHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhc
Q 007337 511 IARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998874 4799999999999886 5999999999999999999999865
Q ss_pred C
Q 007337 589 G 589 (607)
Q Consensus 589 ~ 589 (607)
.
T Consensus 250 ~ 250 (263)
T 2olj_A 250 P 250 (263)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.5e-40 Score=330.07 Aligned_cols=179 Identities=29% Similarity=0.472 Sum_probs=155.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------e
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------I 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------i 439 (607)
-|+++|++++|++ .++|+||||+|++||++||+||||||| +
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999963 479999999999999999999999999 8
Q ss_pred EEEccCCCc-ccccHHHHhhcCCC---CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 440 SIVSQEPVL-FNCSIEENIAYGCD---GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 440 ~~V~Q~~~L-f~gTIreNI~~g~~---~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
+|++|++.+ |+.|++||+.++.. ....++++.++++.+++.+... ....+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHHH
Confidence 999999887 78899999998742 1223556888888888765422 22357999999999999999
Q ss_pred hc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 516 MM------NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 516 l~------~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
++ +|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988743 469999999999876 69999999999999999999987
Q ss_pred hc
Q 007337 587 SK 588 (607)
Q Consensus 587 ~~ 588 (607)
+.
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 30
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.6e-40 Score=326.94 Aligned_cols=179 Identities=25% Similarity=0.356 Sum_probs=154.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------eEEEccCCCcc-cc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVLF-NC 451 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~~~Lf-~g 451 (607)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||| ++||||+|.+| +.
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~ 81 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAY 81 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCC
Confidence 4899999999962 2369999999999999999999999999 79999999987 67
Q ss_pred cHHHHhhcCCCC---------CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 007337 452 SIEENIAYGCDG---------KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRIL 522 (607)
Q Consensus 452 TIreNI~~g~~~---------~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~Il 522 (607)
|++|||.++... ...++++.++++..++.++.. ....+||||||||++|||||+++|++|
T Consensus 82 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p~ll 150 (253)
T 2nq2_C 82 SVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLILIARAIASECKLI 150 (253)
T ss_dssp BHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999986310 011345778888888766533 235689999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhc
Q 007337 523 LLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 523 lLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|+ ++.|+++++.+.
T Consensus 151 lLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp EESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 99999999999999999999988754 79999999999988 5799999999999 999999998753
No 31
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=5.2e-40 Score=321.12 Aligned_cols=173 Identities=27% Similarity=0.344 Sum_probs=148.6
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++++|++ .++|+|+||+|++||+++|+|||||||
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 469999999999999999999999999
Q ss_pred ---eEEEccCCCccc-ccHHHHhhcCCC-CCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 ---ISIVSQEPVLFN-CSIEENIAYGCD-GKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 ---i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
++||+|++.+|. -|++||+.++.. ... .++++.++++.+++.+.. .....+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 789999999986 599999987521 011 134566777777765432 233468999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEEeEecCh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTH 582 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~ 582 (607)
+|||||+.+|+++|||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++|++|++++.|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 47999999999998888999999999999999863
No 32
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.6e-39 Score=336.82 Aligned_cols=180 Identities=30% Similarity=0.510 Sum_probs=158.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||| ++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 3899999999963 469999999999999999999999999 899
Q ss_pred EccCCCcccc-cHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFNC-SIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+|+. |++|||.|+... ..+ ++++.++++.+++.++....| .+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999975 999999997321 111 346788899988877655444 57999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999988753 79999999999976 569999999999999999999998764
No 33
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.3e-39 Score=336.65 Aligned_cols=182 Identities=30% Similarity=0.538 Sum_probs=158.0
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eE
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------IS 440 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~ 440 (607)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||| ++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 46999999999942 2469999999999999999999999999 89
Q ss_pred EEccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH
Q 007337 441 IVSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA 514 (607)
Q Consensus 441 ~V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA 514 (607)
||+|++.+|+. |++|||.|+.. ...+ ++++.++++..++.++....| .+||||||||++||||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalArA 159 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALARA 159 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 99999998621 0122 346788888888876654443 5799999999999999
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
|+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+.++.
T Consensus 160 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 160 LAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999988753 799999999999875 59999999999999999999998753
No 34
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.4e-39 Score=324.87 Aligned_cols=175 Identities=26% Similarity=0.406 Sum_probs=150.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|||||||
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 369999999999999999999999999
Q ss_pred eEEEccCCCccc-ccHHHHhhcCCCC---C-----------CC----HHHHHHHHHHcCchHHHHhCCccccccccCCCC
Q 007337 439 ISIVSQEPVLFN-CSIEENIAYGCDG---K-----------AS----SADIENAAKMANAHDFISNFPEKYQTFVGERGV 499 (607)
Q Consensus 439 i~~V~Q~~~Lf~-gTIreNI~~g~~~---~-----------~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~ 499 (607)
++||+|++.+|. .|++|||.++... . .+ .+++.++++..++.+ .......
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-----------LYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-----------hhCCCch
Confidence 899999999986 6999999986321 1 11 123555555555543 3445567
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEEe
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV 577 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Iv 577 (607)
+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999998874 3799999999999875 69999999999999
Q ss_pred EecChhH
Q 007337 578 ESGTHEE 584 (607)
Q Consensus 578 e~G~~~e 584 (607)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
No 35
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1e-39 Score=338.50 Aligned_cols=180 Identities=38% Similarity=0.603 Sum_probs=156.7
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||| ++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 3899999999953 469999999999999999999999999 899
Q ss_pred EccCCCcccc-cHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFNC-SIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+|+. |++|||.|+.. ...+ ++++.++++.+++.++....| .+||||||||++|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999975 99999998621 0122 345778888888866544433 57999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999988753 79999999999876 569999999999999999999998754
No 36
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-39 Score=319.03 Aligned_cols=175 Identities=33% Similarity=0.495 Sum_probs=152.0
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|+ + +|+|+||+|++ |+++|+||||||| ++||
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 68999999995 2 59999999999 9999999999999 7899
Q ss_pred ccCCCcccc-cHHHHhhcCCCCCC----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhc
Q 007337 443 SQEPVLFNC-SIEENIAYGCDGKA----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 443 ~Q~~~Lf~g-TIreNI~~g~~~~~----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~ 517 (607)
+|++.+|+. |++||+.++.. .. +++++.++++..++.++.. ....+||||||||++|||||++
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLD-----------RKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTT-----------CCGGGSCHHHHHHHHHHHHHTT
T ss_pred cCCCccCCCCcHHHHHHHHHH-HcCCchHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHHHHHc
Confidence 999999987 99999999742 11 1345777777777755432 2345799999999999999999
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
+|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++.+..
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999999988743 79999999999976 569999999999999999999998654
No 37
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-39 Score=323.46 Aligned_cols=180 Identities=34% Similarity=0.473 Sum_probs=155.5
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------e------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------I------------ 439 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------i------------ 439 (607)
.|+++|++++|++ .++|+|+||+|++||++||+||||||| +
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999963 469999999999999999999999999 3
Q ss_pred -------------EEEccCCCcccc-cHHHHhhcCC--CCCCC----HHHHHHHHHHcCchHH-HHhCCccccccccCCC
Q 007337 440 -------------SIVSQEPVLFNC-SIEENIAYGC--DGKAS----SADIENAAKMANAHDF-ISNFPEKYQTFVGERG 498 (607)
Q Consensus 440 -------------~~V~Q~~~Lf~g-TIreNI~~g~--~~~~~----~~~i~~al~~a~l~~~-i~~lp~G~~T~ige~G 498 (607)
+||+|++.+|+. |++|||.++. ....+ ++++.++++..++.++ ... ..
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGK-----------YP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTS-----------CG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcC-----------Cc
Confidence 489999999876 9999998842 00122 3457788888888776 333 34
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh-hcCEEEEEeCCEE
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ-SADTVAVVSDGEI 576 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~-~aD~Iivl~~G~I 576 (607)
.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 6799999999999999999999999999999999999999999998874 4799999999999886 6999999999999
Q ss_pred eEecChhHHhhcC
Q 007337 577 VESGTHEELLSKG 589 (607)
Q Consensus 577 ve~G~~~eL~~~~ 589 (607)
++.|+++++.+..
T Consensus 232 ~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 232 EEEGDPEQVFGNP 244 (262)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEeCCHHHHHhCc
Confidence 9999999998653
No 38
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=3.3e-39 Score=335.98 Aligned_cols=180 Identities=30% Similarity=0.519 Sum_probs=152.3
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISI 441 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~ 441 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||| |+|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 4999999999963 469999999999999999999999999 899
Q ss_pred EccCCCcccc-cHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 442 VSQEPVLFNC-SIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 442 V~Q~~~Lf~g-TIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
|+|++.+|+. |++|||.|+... ..+ ++++.++++.+++.++....| .+||||||||++|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 9999999964 999999997421 122 245778888888876654443 58999999999999999
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++.
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999988753 79999999999886 569999999999999999999998753
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.6e-39 Score=334.10 Aligned_cols=178 Identities=35% Similarity=0.578 Sum_probs=156.4
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEE
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V 442 (607)
|+++|++++|+ +. +|+|+||+|++||+++|+||||||| ++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 78999999995 34 9999999999999999999999999 8999
Q ss_pred ccCCCcccc-cHHHHhhcCCC--CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 443 SQEPVLFNC-SIEENIAYGCD--GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 443 ~Q~~~Lf~g-TIreNI~~g~~--~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
+|++.+|+. |++|||.|+.. ....++++.++++..++.++....| .+||||||||++|||||+++|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHcCC
Confidence 999999976 99999998621 0112377888999988876544433 579999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhhcC
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLSKG 589 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~~~ 589 (607)
++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+.++.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999988743 79999999999876 569999999999999999999998753
No 40
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=3.3e-39 Score=334.66 Aligned_cols=180 Identities=34% Similarity=0.543 Sum_probs=157.4
Q ss_pred cEEEEeEEEECCCCCCCc--ccccceEEeeCCCEEEEEcCCCCcc-----------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHM--VLKGITLKLLSGSKIALVGPSGGGK----------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~--vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------- 438 (607)
.|+++|++++|++ .+ +|+|+||+|++||+++|+|||||||
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999953 35 9999999999999999999999999
Q ss_pred ----eEEEccCCCcccc-cHHHHhhcCCCC-CCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 ----ISIVSQEPVLFNC-SIEENIAYGCDG-KAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 ----i~~V~Q~~~Lf~g-TIreNI~~g~~~-~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++||+|++.+|+. |++|||.|+... ..+ ++++.++++..++.++....| .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 6899999999975 999999997421 122 345778888888877654443 5799999999
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHH
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL 585 (607)
++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988743 799999999999764 6999999999999999999999
Q ss_pred hhcC
Q 007337 586 LSKG 589 (607)
Q Consensus 586 ~~~~ 589 (607)
+++.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8753
No 41
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=9.3e-39 Score=316.36 Aligned_cols=174 Identities=25% Similarity=0.376 Sum_probs=155.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------------eE
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------------IS 440 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------------i~ 440 (607)
-|+++|++|+ ++|+|+||+|++||+++|+||||||| ++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEE
Confidence 3899999986 48999999999999999999999999 79
Q ss_pred EEccCCCcccc-cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 441 IVSQEPVLFNC-SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 441 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
||+|++.+|.. |++||+.++.....+++++.++++..++.++.. ....+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999999865 999999997421224777889999988876532 345689999999999999999999
Q ss_pred C-------EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhh-hhcCEEEEEeCCEEeEecChhHHhh
Q 007337 520 R-------ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTV-QSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 520 ~-------IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l-~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
+ +||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999998874 479999999999998 6799999999999999999999875
No 42
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4.7e-39 Score=323.87 Aligned_cols=179 Identities=27% Similarity=0.390 Sum_probs=152.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|||||||
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999963 469999999999999999999999999
Q ss_pred -eEEEccCCCc-ccc--cHHHHhhcCCCC------CCC---HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH
Q 007337 439 -ISIVSQEPVL-FNC--SIEENIAYGCDG------KAS---SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ 505 (607)
Q Consensus 439 -i~~V~Q~~~L-f~g--TIreNI~~g~~~------~~~---~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ 505 (607)
|+||+|++.+ |.. |++|||.++... ..+ ++++.++++..++.++. .....+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHHH
Confidence 5799999875 555 999999986310 012 23466777777765432 23456799999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeE--EEEccCchhh-hhcCEEEEEeCCEEeEecC
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTV--LVIAHRLSTV-QSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~Tv--I~ItHrl~~l-~~aD~Iivl~~G~Ive~G~ 581 (607)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+ +.||+|++|++|+|++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988743 7899 9999999987 5699999999999999999
Q ss_pred hhHHhhc
Q 007337 582 HEELLSK 588 (607)
Q Consensus 582 ~~eL~~~ 588 (607)
++++.+.
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998753
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-38 Score=332.74 Aligned_cols=180 Identities=30% Similarity=0.536 Sum_probs=156.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++|++++|++ .++|+|+||+|++||+++|+|||||||
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3899999999963 469999999999999999999999999
Q ss_pred ---eEEEccCCCccc-ccHHHHhhcCCC-CCCC----HHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHH
Q 007337 439 ---ISIVSQEPVLFN-CSIEENIAYGCD-GKAS----SADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRV 509 (607)
Q Consensus 439 ---i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~~----~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRi 509 (607)
|+||+|++.+|+ -|++|||.|+.. ...+ ++++.++++..++.++....| .+||||||||+
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHHHH
Confidence 589999999996 599999998621 0122 245778888888876544433 57999999999
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhh-hcCEEEEEeCCEEeEecChhHHh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQ-SADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
+|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++|++
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999988753 799999999999874 69999999999999999999998
Q ss_pred hcC
Q 007337 587 SKG 589 (607)
Q Consensus 587 ~~~ 589 (607)
++.
T Consensus 229 ~~p 231 (372)
T 1g29_1 229 DKP 231 (372)
T ss_dssp HSC
T ss_pred hCc
Confidence 753
No 44
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.6e-39 Score=318.19 Aligned_cols=175 Identities=27% Similarity=0.477 Sum_probs=142.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
-|+++|++|+|++ .++|+|+||+|++||+++|+|||||||
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999963 469999999999999999999999999
Q ss_pred --eEEEccCCCcccc-cHHHHhhcCCC----CCCC----HHHHHHHHHHcCch-HHHHhCCccccccccCCCCC-CChhH
Q 007337 439 --ISIVSQEPVLFNC-SIEENIAYGCD----GKAS----SADIENAAKMANAH-DFISNFPEKYQTFVGERGVR-LSGGQ 505 (607)
Q Consensus 439 --i~~V~Q~~~Lf~g-TIreNI~~g~~----~~~~----~~~i~~al~~a~l~-~~i~~lp~G~~T~ige~G~~-LSGGQ 505 (607)
++||+|+|.+|++ |++||+.++.. ...+ .+++.++++..++. +.. +..+ .+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~~----~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL-------SRYL----NEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGG-------GSBT----TCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHh-------cCCc----ccCCCHHH
Confidence 6789999999975 99999987420 0111 23456666666663 222 2222 34 99999
Q ss_pred HHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEeEecCh
Q 007337 506 KQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVESGTH 582 (607)
Q Consensus 506 kQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~--aD~Iivl~~G~Ive~G~~ 582 (607)
|||++|||||+++|+++|||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999999875 47899999999999886 599999999999999998
Q ss_pred hH
Q 007337 583 EE 584 (607)
Q Consensus 583 ~e 584 (607)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 73
No 45
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6e-38 Score=314.43 Aligned_cols=178 Identities=26% Similarity=0.400 Sum_probs=148.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------- 438 (607)
.|+++||+|+|++ .++|+|+||+|++||+++|+|||||||
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 469999999999999999999999999
Q ss_pred --eEEEccCCCcccc-cHHHHhhcCC--------CCCCCH----HHHHHHHHHcCchHHHHhCCccccccccCCC--CCC
Q 007337 439 --ISIVSQEPVLFNC-SIEENIAYGC--------DGKASS----ADIENAAKMANAHDFISNFPEKYQTFVGERG--VRL 501 (607)
Q Consensus 439 --i~~V~Q~~~Lf~g-TIreNI~~g~--------~~~~~~----~~i~~al~~a~l~~~i~~lp~G~~T~ige~G--~~L 501 (607)
++||+|+|.+|++ |++||+.++. ....+. +++.++++..++. +.+.++. .+|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~~~L 165 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP-----------EDLLTRSVNVGF 165 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC-----------TTTTTSBTTTTC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCC-----------hhHhcCCcccCC
Confidence 7899999999876 8999986531 001232 2355556555543 2222332 259
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh--cCEEEEEeCCEEeE
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS--ADTVAVVSDGEIVE 578 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~--aD~Iivl~~G~Ive 578 (607)
|||||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998874 37899999999999875 89999999999999
Q ss_pred ecChhHHhh
Q 007337 579 SGTHEELLS 587 (607)
Q Consensus 579 ~G~~~eL~~ 587 (607)
.|+++++..
T Consensus 246 ~g~~~~~~~ 254 (267)
T 2zu0_C 246 SGDFTLVKQ 254 (267)
T ss_dssp EECTTHHHH
T ss_pred EcCHHHHhh
Confidence 999998743
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-37 Score=310.77 Aligned_cols=177 Identities=19% Similarity=0.282 Sum_probs=152.8
Q ss_pred EEEEeEEEECCCC-CCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------eE-EE
Q 007337 397 VELDDVWFAYPSR-PNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------IS-IV 442 (607)
Q Consensus 397 I~~~~vsf~y~~~-~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------i~-~V 442 (607)
|+++|++++|++. ...++|+|+||+|+ ||+++|+||||||| ++ ||
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~v 80 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTNL 80 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEECC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEEe
Confidence 7899999999631 01469999999999 99999999999999 36 99
Q ss_pred ccCCCcccccHHHHhhcCCC-CCCCHHHHHHHHHHcCch-HHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC
Q 007337 443 SQEPVLFNCSIEENIAYGCD-GKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR 520 (607)
Q Consensus 443 ~Q~~~Lf~gTIreNI~~g~~-~~~~~~~i~~al~~a~l~-~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~ 520 (607)
+|+|.+ +.|++||+.++.+ ...+++++.++++..++. +. ......+||||||||++|||||+++|+
T Consensus 81 ~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~~~p~ 148 (263)
T 2pjz_A 81 PEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALASQPE 148 (263)
T ss_dssp GGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred CCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 999999 9999999988631 023567788888887765 33 344567899999999999999999999
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh-hhcC-EEEEEeCCEEeEecChhHHhhc
Q 007337 521 ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV-QSAD-TVAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 521 IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l-~~aD-~Iivl~~G~Ive~G~~~eL~~~ 588 (607)
++|||||||+||+.+.+.+.+.|+++.+ |+|+|||+++.+ +.|| +|++|++|++++.|+++|+.+.
T Consensus 149 lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 149 IVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred EEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 9999999999999999999999998744 999999999987 5799 9999999999999999998753
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-36 Score=292.21 Aligned_cols=166 Identities=23% Similarity=0.350 Sum_probs=139.0
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------------eEEEc
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------------ISIVS 443 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------------i~~V~ 443 (607)
..|+++|++++|+ + ++|+|+||+|++||+++|+||||||| ++||+
T Consensus 9 ~~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 9 SKLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp CEEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred ceEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 3699999999995 3 69999999999999999999999999 58999
Q ss_pred cCCCcccc-cHHHHhhcCCC--C-CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 444 QEPVLFNC-SIEENIAYGCD--G-KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 444 Q~~~Lf~g-TIreNI~~g~~--~-~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~ 519 (607)
|+|.+|.+ |++|||.++.. . ..+++++.++++..++. .. .....+||||||||++|||||+++|
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~-~~~~~~LSgGqkqrv~laraL~~~p 152 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-----------DL-KKKLGELSQGTIRRVQLASTLLVNA 152 (214)
T ss_dssp SSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-----------CT-TSBGGGSCHHHHHHHHHHHHTTSCC
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----------cC-CCChhhCCHHHHHHHHHHHHHHhCC
Confidence 99999986 99999988521 0 12356677777776553 33 4556789999999999999999999
Q ss_pred CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 007337 520 RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVVSDGEI 576 (607)
Q Consensus 520 ~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl~~G~I 576 (607)
+++|||||||+||+.+...+.+.|+++. +++|+|+|||+++.+..++..+++.+|+|
T Consensus 153 ~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 153 EIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp SEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence 9999999999999999999999998874 47899999999999887555555667776
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=7e-40 Score=331.63 Aligned_cols=224 Identities=14% Similarity=0.152 Sum_probs=184.1
Q ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEEEEeEEEECCC
Q 007337 329 TGSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVELDDVWFAYPS 408 (607)
Q Consensus 329 ~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~ 408 (607)
.+..+-+...+|+.+..+ ..|+..+...+..++++..+.+|+.++++.+++...... +..+..+.|+++||+|+|+
T Consensus 37 ~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y~- 112 (305)
T 2v9p_A 37 LAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELITF- 112 (305)
T ss_dssp HTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHHH-
T ss_pred HhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEcC-
Confidence 345666788888877666 479999999999999999999999999987543221111 1011123589999999996
Q ss_pred CCCCcccccceEEeeCCCEEEEEcCCCCcc---------------eEEEccCCCcccccHHH-HhhcCCCCCCCHHHHHH
Q 007337 409 RPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------ISIVSQEPVLFNCSIEE-NIAYGCDGKASSADIEN 472 (607)
Q Consensus 409 ~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------i~~V~Q~~~Lf~gTIre-NI~~g~~~~~~~~~i~~ 472 (607)
.++|+|+||+|++|++++||||||||| ++|++|+|++|++|++| ||.++. +.++
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v~q~~~lf~~ti~~~ni~~~~--~~~~----- 182 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVD--DATH----- 182 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEECGGGTTSGGGGGGGTTCSCEEEE--EECH-----
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEEEEecCccccccccHHHHhhccCc--cccH-----
Confidence 369999999999999999999999999 67899999999999998 999972 4553
Q ss_pred HHHHcCchHHHHh-CCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCe
Q 007337 473 AAKMANAHDFISN-FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRT 551 (607)
Q Consensus 473 al~~a~l~~~i~~-lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~T 551 (607)
+++++++. ||+|++ |.+|||||||| |||++++|+||| ||+||+++++.+.+
T Consensus 183 -----~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------- 234 (305)
T 2v9p_A 183 -----ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------- 234 (305)
T ss_dssp -----HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----------
T ss_pred -----HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----------
Confidence 23567777 999998 78999999999 999999999999 99999999988852
Q ss_pred EEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhhcCCchHHHHHHhhc
Q 007337 552 VLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLSKGGVYTALVKRQLQ 601 (607)
Q Consensus 552 vI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~~~g~y~~l~~~~~~ 601 (607)
+|||+++++.||+| +|++|+|++.|+|+|| ++.|++++..+..
T Consensus 235 ---ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~~ 277 (305)
T 2v9p_A 235 ---LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLDL 277 (305)
T ss_dssp ---GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTTC
T ss_pred ---HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHccc
Confidence 39999999999999 9999999999999999 7889988876543
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=3.1e-31 Score=290.95 Aligned_cols=177 Identities=27% Similarity=0.303 Sum_probs=147.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------eEEEccCCCc-ccc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVL-FNC 451 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~~~L-f~g 451 (607)
.++++|++++|.+ ..|+++||+|++||++||+||||||| ++||||++.. ++.
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~ 362 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEG 362 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSS
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCC
Confidence 5899999999953 36899999999999999999999999 8999999876 678
Q ss_pred cHHHHhhcC-CCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCC
Q 007337 452 SIEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 530 (607)
Q Consensus 452 TIreNI~~g-~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSa 530 (607)
|+.||+... .+....++++.++++..++.+. ......+||||||||++|||||+++|++|||||||++
T Consensus 363 tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~ 431 (538)
T 1yqt_A 363 TVYELLSKIDASKLNSNFYKTELLKPLGIIDL-----------YDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAY 431 (538)
T ss_dssp BHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccc
Confidence 999998753 1101123445555555554332 2334567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeC--CEEeEecChhHHhh
Q 007337 531 LDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD--GEIVESGTHEELLS 587 (607)
Q Consensus 531 LD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~--G~Ive~G~~~eL~~ 587 (607)
||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++..|++++++.
T Consensus 432 LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 432 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999874 3899999999999886 5999999986 78888999988765
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=1e-29 Score=290.55 Aligned_cols=176 Identities=23% Similarity=0.288 Sum_probs=150.4
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc----------------------eEEEccCC-C-ccc
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK----------------------ISIVSQEP-V-LFN 450 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------i~~V~Q~~-~-Lf~ 450 (607)
..+...|++++|++ .++|+|+||+|++|++++|+||||||| ++|++|++ . ...
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSD 510 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTT
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccC
Confidence 35888899999963 469999999999999999999999999 47888875 3 346
Q ss_pred ccHHHHhhcCCCCCCCHHHHHHHHHHcCch-HHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCC
Q 007337 451 CSIEENIAYGCDGKASSADIENAAKMANAH-DFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 529 (607)
Q Consensus 451 gTIreNI~~g~~~~~~~~~i~~al~~a~l~-~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TS 529 (607)
-|++||+.+... .. ++++.++++..++. +.... . -..||||||||++|||||+.+|+|||||||||
T Consensus 511 ltv~e~l~~~~~-~~-~~~v~~~L~~lgL~~~~~~~-------~----~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 511 TSVLDFVFESGV-GT-KEAIKDKLIEFGFTDEMIAM-------P----ISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp SBHHHHHHTTCS-SC-HHHHHHHHHHTTCCHHHHHS-------B----GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred CcHHHHHHHhhc-CH-HHHHHHHHHHcCCChhhhcC-------C----cccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 799999986211 22 77889999999884 33332 2 24699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEe-EecChhHHhhc
Q 007337 530 ALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIV-ESGTHEELLSK 588 (607)
Q Consensus 530 aLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Iv-e~G~~~eL~~~ 588 (607)
+||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|+++ ..|+++++.+.
T Consensus 578 ~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp TCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 9999999999999988 6899999999999986 59999999999997 58999998753
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=4.3e-31 Score=292.61 Aligned_cols=177 Identities=27% Similarity=0.304 Sum_probs=148.2
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------eEEEccCCCc-ccc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------ISIVSQEPVL-FNC 451 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i~~V~Q~~~L-f~g 451 (607)
.++++|++++|.+ ..|+++||+|++||++||+||||||| ++||||++.+ ++.
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~ 432 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEG 432 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSS
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCC
Confidence 5899999999953 36899999999999999999999999 8999999876 678
Q ss_pred cHHHHhhcC-CCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCC
Q 007337 452 SIEENIAYG-CDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA 530 (607)
Q Consensus 452 TIreNI~~g-~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSa 530 (607)
|++||+... ......++++.++++..++.+. ....-.+||||||||++|||||+++|++|||||||++
T Consensus 433 tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~ 501 (607)
T 3bk7_A 433 TVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAY 501 (607)
T ss_dssp BHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTT
T ss_pred cHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccC
Confidence 999999764 1100123456666766665432 2233457999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeC--CEEeEecChhHHhh
Q 007337 531 LDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD--GEIVESGTHEELLS 587 (607)
Q Consensus 531 LD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~--G~Ive~G~~~eL~~ 587 (607)
||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++..|++++++.
T Consensus 502 LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 502 LDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999874 4899999999999886 5999999986 88888999988875
No 52
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=2.2e-30 Score=296.08 Aligned_cols=134 Identities=28% Similarity=0.423 Sum_probs=109.6
Q ss_pred ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC---CEEEEecc
Q 007337 451 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEA 527 (607)
Q Consensus 451 gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~---~IllLDE~ 527 (607)
.|++||+.|... ....++..++++.+++ |+ ..+|+.+.+|||||||||+|||||+++| +|||||||
T Consensus 767 ~tv~eal~f~~~-~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEP 835 (916)
T 3pih_A 767 MTVDEALEFFKN-IPSIKRTLQVLHDVGL---------GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEP 835 (916)
T ss_dssp SBHHHHHHHTTT-CHHHHHHHHHHHHTTG---------GG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEEST
T ss_pred CCHHHHHHHHhc-chhHHHHHHHHHHcCC---------ch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECC
Confidence 456666666532 2223344455555554 22 3478889999999999999999999876 79999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCCEEeEecChhHHhhcCCchHHH
Q 007337 528 TSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSKGGVYTAL 595 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~~g~y~~l 595 (607)
||+||+.+++.+.+.|+++. +++|+|+|+|+++.++.||+|++| ++|+|+++|+|+|+++..+.|..-
T Consensus 836 TsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~ 910 (916)
T 3pih_A 836 TVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGR 910 (916)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHH
Confidence 99999999999999998874 489999999999999999999999 899999999999999887777543
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=1.6e-30 Score=284.35 Aligned_cols=177 Identities=23% Similarity=0.308 Sum_probs=145.1
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------eEEEccCCCc-c
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------ISIVSQEPVL-F 449 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------i~~V~Q~~~L-f 449 (607)
..++++|++++|.+ ..|++.||+|++||+++|+||||||| ++|+||++.. +
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNY 343 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhccccc
Confidence 35899999999953 46888899999999999999999999 8999999765 5
Q ss_pred cccHHHHhhcCCCCC--CCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEecc
Q 007337 450 NCSIEENIAYGCDGK--ASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA 527 (607)
Q Consensus 450 ~gTIreNI~~g~~~~--~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~ 527 (607)
..|++||+.+..... ...+.+.++++..++.+. ......+||||||||++|||||+++|+|||||||
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 899999998743211 223445666666666543 2334567999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEeEecChhHHh
Q 007337 528 TSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSD--GEIVESGTHEELL 586 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~--G~Ive~G~~~eL~ 586 (607)
|++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|+||++ |++...|++.++.
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999998874 47899999999998875 999999986 5666667665543
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=3.3e-30 Score=291.64 Aligned_cols=131 Identities=27% Similarity=0.398 Sum_probs=104.1
Q ss_pred ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCC---CEEEEecc
Q 007337 451 CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEA 527 (607)
Q Consensus 451 gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~---~IllLDE~ 527 (607)
-|++||+.+... ....++..++++..++. + ...+....+||||||||++|||||+++| +|||||||
T Consensus 505 ltv~e~l~~~~~-~~~~~~~~~~l~~~~l~---------~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEP 573 (670)
T 3ux8_A 505 MTVEDALDFFAS-IPKIKRKLETLYDVGLG---------Y-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEP 573 (670)
T ss_dssp SBHHHHHHHTTT-CHHHHHHHHHHHHTTCT---------T-SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEEST
T ss_pred CCHHHHHHHHHH-hhhHHHHHHHHHHcCCc---------h-hhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCC
Confidence 478888877632 11222333444433331 1 2345667889999999999999999886 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCCEEeEecChhHHhhcCCch
Q 007337 528 TSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSKGGVY 592 (607)
Q Consensus 528 TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~~g~y 592 (607)
||+||+.+...+.+.|+++. +++|+|+|||+++.+..||+|++| ++|+|++.|+++|+.+....|
T Consensus 574 t~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~~~~ 645 (670)
T 3ux8_A 574 TTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESH 645 (670)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCTTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCCccH
Confidence 99999999999999998874 479999999999999999999999 899999999999998765544
No 55
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.5e-30 Score=284.72 Aligned_cols=177 Identities=24% Similarity=0.341 Sum_probs=147.9
Q ss_pred EEeEEEECCCCCCCcccccceEEeeCC-----CEEEEEcCCCCcc-----------------------eEEEccCCC-cc
Q 007337 399 LDDVWFAYPSRPNHMVLKGITLKLLSG-----SKIALVGPSGGGK-----------------------ISIVSQEPV-LF 449 (607)
Q Consensus 399 ~~~vsf~y~~~~~~~vL~~isl~i~~G-----e~vaiVG~sGsGK-----------------------i~~V~Q~~~-Lf 449 (607)
.++++|+|+.. ..+++|+||++++| |+++|+||||||| ++|+||++. .|
T Consensus 349 ~~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 349 SASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCC
T ss_pred ccceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccC
Confidence 36788999753 35899999999999 8899999999999 899999965 57
Q ss_pred cccHHHHhhcCCC-CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccC
Q 007337 450 NCSIEENIAYGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEAT 528 (607)
Q Consensus 450 ~gTIreNI~~g~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~T 528 (607)
+.|++||+..... ...+.+...++++..++.+. ....-..||||||||++|||||.++|+||||||||
T Consensus 427 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 427 PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred CccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 8999999864321 12345556677777766543 22334679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhhhh-cCEEEEEeC--CEEeEecChhHHhhc
Q 007337 529 SALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQS-ADTVAVVSD--GEIVESGTHEELLSK 588 (607)
Q Consensus 529 SaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~--G~Ive~G~~~eL~~~ 588 (607)
++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++..|++++++..
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999998864 48999999999998865 999999996 999999999999875
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=7.3e-30 Score=291.77 Aligned_cols=174 Identities=27% Similarity=0.426 Sum_probs=133.9
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCc--
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVL-- 448 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~L-- 448 (607)
-|+++|++|+|++. +.++|+|+||+|++||++||+||||||| ++|++|++..
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l 749 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHI 749 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHHG
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhhh
Confidence 38999999999753 3579999999999999999999999999 7899998632
Q ss_pred ---ccccHHHHhhc------------------------------------------------------------------
Q 007337 449 ---FNCSIEENIAY------------------------------------------------------------------ 459 (607)
Q Consensus 449 ---f~gTIreNI~~------------------------------------------------------------------ 459 (607)
.+.|+++|+.+
T Consensus 750 ~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l 829 (986)
T 2iw3_A 750 ESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGM 829 (986)
T ss_dssp GGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTS
T ss_pred hcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhc
Confidence 23466666532
Q ss_pred CCC----------------------------------------CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCC
Q 007337 460 GCD----------------------------------------GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGV 499 (607)
Q Consensus 460 g~~----------------------------------------~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~ 499 (607)
+.. ....++++.++++..++.+... ......
T Consensus 830 ~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~---------~~~~~~ 900 (986)
T 2iw3_A 830 KSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV---------SHSRIR 900 (986)
T ss_dssp TTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH---------HHSCGG
T ss_pred ccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh---------cCCCcc
Confidence 100 0011233444444444432110 123456
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCEEeE
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGEIVE 578 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~Ive 578 (607)
+||||||||++|||||+++|+||||||||++||+.+...+.+.|++. ++|+|+|||+++.+. .||+|++|++|++++
T Consensus 901 ~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 89999999999999999999999999999999999999999999875 679999999999885 699999999999998
Q ss_pred ecC
Q 007337 579 SGT 581 (607)
Q Consensus 579 ~G~ 581 (607)
.|+
T Consensus 979 ~G~ 981 (986)
T 2iw3_A 979 SGH 981 (986)
T ss_dssp ---
T ss_pred eCC
Confidence 775
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=1.5e-29 Score=286.21 Aligned_cols=96 Identities=27% Similarity=0.425 Sum_probs=87.7
Q ss_pred CCCCCCChhHHHHHHHHHHHhcCCC--EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE-
Q 007337 496 ERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV- 571 (607)
Q Consensus 496 e~G~~LSGGQkQRialARAll~~~~--IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl- 571 (607)
.....||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+..||+|++|
T Consensus 198 ~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~ 277 (670)
T 3ux8_A 198 RSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIG 277 (670)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEEC
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEec
Confidence 3456799999999999999999988 999999999999999999999998764 479999999999999999999999
Q ss_pred -----eCCEEeEecChhHHhhcCCc
Q 007337 572 -----SDGEIVESGTHEELLSKGGV 591 (607)
Q Consensus 572 -----~~G~Ive~G~~~eL~~~~g~ 591 (607)
++|++++.|+++++.+....
T Consensus 278 ~g~~~~~G~i~~~g~~~~~~~~~~~ 302 (670)
T 3ux8_A 278 PGAGIHGGEVVAAGTPEEVMNDPNS 302 (670)
T ss_dssp SSSGGGCCSEEEEECHHHHHTCTTC
T ss_pred ccccccCCEEEEecCHHHHhcCchh
Confidence 89999999999999876543
No 58
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.95 E-value=2.8e-28 Score=270.07 Aligned_cols=161 Identities=27% Similarity=0.402 Sum_probs=131.0
Q ss_pred cEEE--------EeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------e-----------
Q 007337 396 EVEL--------DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------I----------- 439 (607)
Q Consensus 396 ~I~~--------~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i----------- 439 (607)
.|++ +|++++|++. ..+|+|+| +|++||++||+||||||| +
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 8999999642 25899999 999999999999999999 1
Q ss_pred -------------------EEEccC----CCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccC
Q 007337 440 -------------------SIVSQE----PVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE 496 (607)
Q Consensus 440 -------------------~~V~Q~----~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige 496 (607)
++++|. +.++.+|++||+.... ..+++.++++..++.+.. +..
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~----~~~~~~~~L~~lgL~~~~-------~~~--- 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD----EVGKFEEVVKELELENVL-------DRE--- 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC----CSSCHHHHHHHTTCTTGG-------GSB---
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH----HHHHHHHHHHHcCCCchh-------CCC---
Confidence 244554 3344569999987532 124577788888775442 222
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCC
Q 007337 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDG 574 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G 574 (607)
-.+||||||||++|||||+++|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+++
T Consensus 226 -~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 226 -LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp -GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 34699999999999999999999999999999999999999999998874 48999999999998764 9999999864
No 59
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.95 E-value=4.7e-28 Score=265.65 Aligned_cols=160 Identities=28% Similarity=0.394 Sum_probs=125.3
Q ss_pred EEE-EeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------e-------------------
Q 007337 397 VEL-DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------I------------------- 439 (607)
Q Consensus 397 I~~-~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i------------------- 439 (607)
.++ +|++++|++. .++|+|+| +|++||++||+||||||| +
T Consensus 21 ~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 455 6899999642 25899999 999999999999999999 1
Q ss_pred -----------EEEccCCC----cccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 440 -----------SIVSQEPV----LFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 440 -----------~~V~Q~~~----Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++++|+.. ++.+|++||+.... ..+++.++++..++.++ .+. .-.+||||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~----~~~~~~~~l~~lgl~~~-------~~~----~~~~LSgG 162 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD----ETGKLEEVVKALELENV-------LER----EIQHLSGG 162 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC----SSSCHHHHHHHTTCTTT-------TTS----BGGGCCHH
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh----HHHHHHHHHHHcCCChh-------hhC----ChhhCCHH
Confidence 24445432 23358888876431 12456777887776433 122 23569999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhh-cCEEEEEeCC
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQS-ADTVAVVSDG 574 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~-aD~Iivl~~G 574 (607)
||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 163 ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 9999999999999999999999999999999999999998764 47999999999998865 9999999864
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.94 E-value=2e-26 Score=261.36 Aligned_cols=100 Identities=29% Similarity=0.476 Sum_probs=91.3
Q ss_pred cccCCCCCCChhHHHHHHHHHHHhcC---CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEE
Q 007337 493 FVGERGVRLSGGQKQRVAIARALMMN---PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTV 568 (607)
Q Consensus 493 ~ige~G~~LSGGQkQRialARAll~~---~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~I 568 (607)
.++....+||||||||++|||||+++ |+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.++.||+|
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 35777889999999999999999996 79999999999999999999999998864 589999999999999999999
Q ss_pred EEE------eCCEEeEecChhHHhhcCCch
Q 007337 569 AVV------SDGEIVESGTHEELLSKGGVY 592 (607)
Q Consensus 569 ivl------~~G~Ive~G~~~eL~~~~g~y 592 (607)
++| ++|+|++.|+++++.+....|
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 999 699999999999998865444
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.93 E-value=6.5e-26 Score=257.11 Aligned_cols=105 Identities=33% Similarity=0.478 Sum_probs=93.6
Q ss_pred cccc-cccCCCCCCChhHHHHHHHHHHHhcCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhh
Q 007337 489 KYQT-FVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 489 G~~T-~ige~G~~LSGGQkQRialARAll~~~---~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~ 563 (607)
|+.. ..+....+||||||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.
T Consensus 833 gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~ 912 (972)
T 2r6f_A 833 GLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK 912 (972)
T ss_dssp TCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred CCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 4444 467778899999999999999999875 9999999999999999999999998864 5899999999999999
Q ss_pred hcCEEEEE------eCCEEeEecChhHHhhcCCchH
Q 007337 564 SADTVAVV------SDGEIVESGTHEELLSKGGVYT 593 (607)
Q Consensus 564 ~aD~Iivl------~~G~Ive~G~~~eL~~~~g~y~ 593 (607)
.||+|++| ++|+|++.|+++++.+....|.
T Consensus 913 ~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~~t 948 (972)
T 2r6f_A 913 TADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHT 948 (972)
T ss_dssp TCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTCHH
T ss_pred hCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchhHH
Confidence 99999999 7899999999999987655553
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.93 E-value=1.1e-25 Score=256.38 Aligned_cols=112 Identities=29% Similarity=0.467 Sum_probs=97.1
Q ss_pred HHHhCCccccc-cccCCCCCCChhHHHHHHHHHHHhcCC---CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEc
Q 007337 482 FISNFPEKYQT-FVGERGVRLSGGQKQRVAIARALMMNP---RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIA 556 (607)
Q Consensus 482 ~i~~lp~G~~T-~ige~G~~LSGGQkQRialARAll~~~---~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~It 556 (607)
.++.+ |+.. .++....+||||||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. .++|+|+||
T Consensus 846 ~L~~l--gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvis 923 (993)
T 2ygr_A 846 TLVDV--GLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923 (993)
T ss_dssp HHHHT--TGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHc--CCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 34444 4444 567888899999999999999999875 9999999999999999999999998864 589999999
Q ss_pred cCchhhhhcCEEEEE------eCCEEeEecChhHHhhcCCchHHH
Q 007337 557 HRLSTVQSADTVAVV------SDGEIVESGTHEELLSKGGVYTAL 595 (607)
Q Consensus 557 Hrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~~g~y~~l 595 (607)
|+++.+..||+|++| ++|+|++.|+++++.+....|...
T Consensus 924 Hdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~~~~~t~~ 968 (993)
T 2ygr_A 924 HNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASYTGK 968 (993)
T ss_dssp CCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHHCTTCHHHH
T ss_pred CCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHhCCHHHHHH
Confidence 999999999999999 689999999999998876555443
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.5e-26 Score=251.96 Aligned_cols=160 Identities=23% Similarity=0.320 Sum_probs=121.6
Q ss_pred eEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------eEEE-------------------------------
Q 007337 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------ISIV------------------------------- 442 (607)
Q Consensus 401 ~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------i~~V------------------------------- 442 (607)
|++++|... ...|++++ ++++||++||+||||||| .+..
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 468999743 35778777 699999999999999999 1111
Q ss_pred -----------ccCCC----ccc---ccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 443 -----------SQEPV----LFN---CSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 443 -----------~Q~~~----Lf~---gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
+|... .+. .++.+++.... ...++++.++++..++.++.. ..-.+||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG 225 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM--EKSPEDVKRYIKILQLENVLK-----------RDIEKLSGG 225 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC--CSCHHHHHHHHHHHTCTGGGG-----------SCTTTCCHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh--hhHHHHHHHHHHHcCCcchhC-----------CChHHCCHH
Confidence 11100 001 14555554432 234567778888877765432 334679999
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhh-cCEEEEEeCCEE
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQS-ADTVAVVSDGEI 576 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~-aD~Iivl~~G~I 576 (607)
||||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|..
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999998754 7899999999998865 999999987653
No 64
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.93 E-value=4.6e-26 Score=249.16 Aligned_cols=158 Identities=20% Similarity=0.324 Sum_probs=124.0
Q ss_pred EeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------e-----------------------
Q 007337 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------I----------------------- 439 (607)
Q Consensus 400 ~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i----------------------- 439 (607)
++++.+|..+ ...|.++. .+++||++||+||||||| +
T Consensus 3 ~~~~~~~~~~--~f~l~~l~-~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN--GFKLFGLP-TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT--SCEEECCC-CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC--ceeecCCC-CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3567889753 24444433 256999999999999999 1
Q ss_pred -------------EEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHH
Q 007337 440 -------------SIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQK 506 (607)
Q Consensus 440 -------------~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQk 506 (607)
.|++|.+.++.+|+++++.... ..+++.++++..++.++. +.. -.+||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~----~~~~~~~~l~~l~l~~~~-------~~~----~~~LSgGe~ 144 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID----ERGKKDEVKELLNMTNLW-------NKD----ANILSGGGL 144 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC----CSSCHHHHHHHTTCGGGT-------TSB----GGGCCHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcch----hHHHHHHHHHHcCCchhh-------cCC----hhhCCHHHH
Confidence 2334555667788888876432 123567788888775532 222 356999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh-hcCEEEEEeCCE
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ-SADTVAVVSDGE 575 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~-~aD~Iivl~~G~ 575 (607)
||++|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999999877999999999999875 599999998753
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=1.2e-24 Score=232.93 Aligned_cols=80 Identities=25% Similarity=0.372 Sum_probs=76.4
Q ss_pred CChhHHHHHHHHHHHhcCC--CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE----eCC
Q 007337 501 LSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV----SDG 574 (607)
Q Consensus 501 LSGGQkQRialARAll~~~--~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl----~~G 574 (607)
||||||||++|||+|+++| ++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+..||+|++| ++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G 375 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDG 375 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCC
Confidence 8999999999999999999 9999999999999999999999999987789999999999999999999999 999
Q ss_pred EEeEec
Q 007337 575 EIVESG 580 (607)
Q Consensus 575 ~Ive~G 580 (607)
+++...
T Consensus 376 ~~~~~~ 381 (415)
T 4aby_A 376 RTVSHV 381 (415)
T ss_dssp EEEEEE
T ss_pred ceEEEE
Confidence 987653
No 66
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.5e-27 Score=254.08 Aligned_cols=165 Identities=13% Similarity=0.119 Sum_probs=127.1
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------------eEEEccCC
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------------ISIVSQEP 446 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------------i~~V~Q~~ 446 (607)
.++++|++|+| .++||++++|++++|+||||||| ++||||++
T Consensus 118 mi~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 118 MKYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp HHHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred hhhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 35666666665 26999999999999999999999 34678988
Q ss_pred Cccc----ccHHHHhhcCCCC---CCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHH--Hhc
Q 007337 447 VLFN----CSIEENIAYGCDG---KASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARA--LMM 517 (607)
Q Consensus 447 ~Lf~----gTIreNI~~g~~~---~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARA--ll~ 517 (607)
.+|. .|++||+ ++... ...++++.++++.. |++.... ..+||||||||++|||| |++
T Consensus 189 ~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrlalAra~rL~~ 254 (460)
T 2npi_A 189 SATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLGQVVGQRLHL 254 (460)
T ss_dssp EEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHHHHHHHHhcc
Confidence 6543 5899999 76320 01112233333333 3333332 67899999999999999 999
Q ss_pred CCCE----EEEec-cCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch------hh-hhcCE-----EEEEe-CCEEeEe
Q 007337 518 NPRI----LLLDE-ATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS------TV-QSADT-----VAVVS-DGEIVES 579 (607)
Q Consensus 518 ~~~I----llLDE-~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~------~l-~~aD~-----Iivl~-~G~Ive~ 579 (607)
+|++ +|||| |||+||+. ...+.+.+++. ++|+|+|+|+.+ .+ ..||+ |++|+ +|+|+ .
T Consensus 255 ~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~ 330 (460)
T 2npi_A 255 DPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-A 330 (460)
T ss_dssp CHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-C
T ss_pred CcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-E
Confidence 9999 99999 99999999 77777777664 789999999987 33 56999 99999 99999 9
Q ss_pred cChhHHhh
Q 007337 580 GTHEELLS 587 (607)
Q Consensus 580 G~~~eL~~ 587 (607)
|+++++.+
T Consensus 331 g~~~~~~~ 338 (460)
T 2npi_A 331 VDDVYKRS 338 (460)
T ss_dssp CCHHHHHH
T ss_pred CCHHHHhh
Confidence 99998854
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.87 E-value=8.6e-24 Score=197.63 Aligned_cols=146 Identities=12% Similarity=0.143 Sum_probs=95.1
Q ss_pred cceEEeeCCCEEEEEcCCCCcceEEEc---cCCCcccc-cHHHHhhcCCCCCC-CHHHHHHHHHHcCchHHHHhCCcccc
Q 007337 417 GITLKLLSGSKIALVGPSGGGKISIVS---QEPVLFNC-SIEENIAYGCDGKA-SSADIENAAKMANAHDFISNFPEKYQ 491 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGKi~~V~---Q~~~Lf~g-TIreNI~~g~~~~~-~~~~i~~al~~a~l~~~i~~lp~G~~ 491 (607)
|+||++++||.++|+|||||||-+++- ......+. .++. +.+.++... -.....+.+.. .....+..|+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~ 75 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRG-LMSDDENDQTVTGAAFDVLHY----IVSKRLQLGKL 75 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHH-HHCSSTTCGGGHHHHHHHHHH----HHHHHHHTTCC
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHH-HhcCcccchhhHHHHHHHHHH----HHHHHHhCCCe
Confidence 689999999999999999999911111 00011111 2221 222211010 01111111111 11122344666
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHH----------------HHHHHHHHHhc-CCCeEEE
Q 007337 492 TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESE----------------YLVQDAMDSLM-KGRTVLV 554 (607)
Q Consensus 492 T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te----------------~~i~~~l~~~~-~~~TvI~ 554 (607)
+.+.... ..|||||||++||||+..+|++++|||||++||+.++ +.+.+.|+++. ++.|+|+
T Consensus 76 ~~~~~~~-~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~ 154 (171)
T 4gp7_A 76 TVVDATN-VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVY 154 (171)
T ss_dssp EEEESCC-CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEE
T ss_pred EEEECCC-CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEE
Confidence 6665443 4599999999999999999999999999999999955 67777765442 4899999
Q ss_pred EccCchhhhhcCEE
Q 007337 555 IAHRLSTVQSADTV 568 (607)
Q Consensus 555 ItHrl~~l~~aD~I 568 (607)
|||+++.+..++++
T Consensus 155 vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 155 ILNSPEEVEEVVFE 168 (171)
T ss_dssp EECSHHHHHHEEEE
T ss_pred EeCCHHHhhhhhhc
Confidence 99999999888765
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=3e-22 Score=206.55 Aligned_cols=100 Identities=21% Similarity=0.260 Sum_probs=78.6
Q ss_pred hCCccccccccC------CCCCCChhHHHHHHHHHHHh----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 007337 485 NFPEKYQTFVGE------RGVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLV 554 (607)
Q Consensus 485 ~lp~G~~T~ige------~G~~LSGGQkQRialARAll----~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ 554 (607)
.++.|+++.++. ....||||||||++|||||. ++|+++|||||||+||+.+...+.+.|+++.+++|+|+
T Consensus 198 ~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~ 277 (322)
T 1e69_A 198 ILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIV 277 (322)
T ss_dssp ------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEE
T ss_pred cccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Confidence 456677776542 34689999999999999996 78999999999999999999999999998877889999
Q ss_pred EccCchhhhhcCEE--EEEeCCEE-eEecChhH
Q 007337 555 IAHRLSTVQSADTV--AVVSDGEI-VESGTHEE 584 (607)
Q Consensus 555 ItHrl~~l~~aD~I--ivl~~G~I-ve~G~~~e 584 (607)
|||+.+.+..||++ ++|++|+. +...+-+|
T Consensus 278 ~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 278 ITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp ECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred EECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 99999888999987 88888865 33334443
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=6.7e-22 Score=206.98 Aligned_cols=82 Identities=22% Similarity=0.352 Sum_probs=75.7
Q ss_pred CCCCCChhHHHHHHHHHHHh------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEE
Q 007337 497 RGVRLSGGQKQRVAIARALM------MNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVA 569 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAll------~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Ii 569 (607)
...+||||||||++|||||. ++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++....||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 45579999999999999999 7999999999999999999999999998874 4799999999999999999999
Q ss_pred EEeCCEEeE
Q 007337 570 VVSDGEIVE 578 (607)
Q Consensus 570 vl~~G~Ive 578 (607)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
No 70
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.84 E-value=2.1e-21 Score=220.36 Aligned_cols=96 Identities=29% Similarity=0.417 Sum_probs=87.6
Q ss_pred ccCCCCCCChhHHHHHHHHHHHhcCC--CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEE
Q 007337 494 VGERGVRLSGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 570 (607)
Q Consensus 494 ige~G~~LSGGQkQRialARAll~~~--~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iiv 570 (607)
.+..-..|||||||||+|||||.++| .+|||||||++||++..+.+.+.|+++. .+.|+|+|+|+++.++.||+|++
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~ 452 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVD 452 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEE
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEE
Confidence 45566799999999999999999999 4999999999999999999999888764 37899999999999999999999
Q ss_pred E------eCCEEeEecChhHHhhcC
Q 007337 571 V------SDGEIVESGTHEELLSKG 589 (607)
Q Consensus 571 l------~~G~Ive~G~~~eL~~~~ 589 (607)
| ++|+++..|+++++.+..
T Consensus 453 lgpgaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 453 VGPEAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp ECSSSGGGCCSEEEEECGGGGGGCT
T ss_pred eCCCcccCCCEEEEecCHHHHHhch
Confidence 9 799999999999998753
No 71
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.81 E-value=7.3e-22 Score=189.88 Aligned_cols=65 Identities=17% Similarity=0.196 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEE
Q 007337 504 GQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEI 576 (607)
Q Consensus 504 GQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~I 576 (607)
|||||++|||||+.+|++||||||||+ +...+.+.|+++.+++|+| |||+++.+. ++...++|..
T Consensus 108 Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 108 VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 999999999999999999999999999 8888999998874578888 999998664 4555667643
No 72
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.80 E-value=7.7e-23 Score=198.91 Aligned_cols=134 Identities=15% Similarity=0.166 Sum_probs=96.1
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEEccCCCcc----------
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIVSQEPVLF---------- 449 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V~Q~~~Lf---------- 449 (607)
..|+||||+|++|++++|+||||||| ++|++|++.+|
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 90 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFL 90 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchh
Confidence 47999999999999999999999999 24667766544
Q ss_pred -cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHH-----HHHHhcCCCEEE
Q 007337 450 -NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAI-----ARALMMNPRILL 523 (607)
Q Consensus 450 -~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRial-----ARAll~~~~Ill 523 (607)
.+++++| .+|. +++++.++++.... ..++ .+||||||||++| ||+++++|++++
T Consensus 91 ~~~~~~~~-~~g~----~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 91 EYDNYANN-FYGT----LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp EEEEETTE-EEEE----EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hhhhcccc-cCCC----cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 3445555 3442 24556666665332 1222 6799999999999 999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeC
Q 007337 524 LDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSD 573 (607)
Q Consensus 524 LDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~ 573 (607)
|||||+++|.+++..+.+.+.+..+++| ++| +..||.|+|+++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999988777777 788 578999988865
No 73
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.79 E-value=4e-19 Score=160.85 Aligned_cols=88 Identities=28% Similarity=0.366 Sum_probs=76.4
Q ss_pred cccccc-----cCCCCCCChhHHHHHHHH------HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEc
Q 007337 489 KYQTFV-----GERGVRLSGGQKQRVAIA------RALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIA 556 (607)
Q Consensus 489 G~~T~i-----ge~G~~LSGGQkQRialA------RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~It 556 (607)
+|++.+ .....+||||||||++|| ||++++|++++|||||++||+.+...+.+.|.++. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677665 234678999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cCchhhhhcCEEEEE--eCCEE
Q 007337 557 HRLSTVQSADTVAVV--SDGEI 576 (607)
Q Consensus 557 Hrl~~l~~aD~Iivl--~~G~I 576 (607)
|+......||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999877889999999 56643
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.78 E-value=1.3e-20 Score=176.71 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=67.8
Q ss_pred ccccCCCCCCChhHHHHHHHHHH-----HhcCCCEEEEec--cCCCCCHHHHHHHHHHHHHhcCCCeEEEEcc---Cchh
Q 007337 492 TFVGERGVRLSGGQKQRVAIARA-----LMMNPRILLLDE--ATSALDAESEYLVQDAMDSLMKGRTVLVIAH---RLST 561 (607)
Q Consensus 492 T~ige~G~~LSGGQkQRialARA-----ll~~~~IllLDE--~TSaLD~~te~~i~~~l~~~~~~~TvI~ItH---rl~~ 561 (607)
..+++.+.+||||||||++|||| ++.+|+++|||| ||+++|+.+.+.+.+.+++ .+.|+|+++| +.+.
T Consensus 68 ~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~ 145 (178)
T 1ye8_A 68 KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPL 145 (178)
T ss_dssp SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHH
T ss_pred ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchH
Confidence 35677788999999999999996 999999999999 9999999999999998876 4677999996 5555
Q ss_pred hhh-cCEEEEEeCCEEeE
Q 007337 562 VQS-ADTVAVVSDGEIVE 578 (607)
Q Consensus 562 l~~-aD~Iivl~~G~Ive 578 (607)
+.. ||+ ++|+|++
T Consensus 146 ~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 146 VKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC----TTCEEEE
T ss_pred HHHHHhc----CCcEEEE
Confidence 543 665 5677766
No 75
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.78 E-value=8.9e-19 Score=199.69 Aligned_cols=138 Identities=22% Similarity=0.353 Sum_probs=106.6
Q ss_pred CCcccccHHHHhhcCCCCCCCHHH--H-----HHHHHHcCchHHHHhCCcccccc-ccCCCCCCChhHHHHHHHHHHHhc
Q 007337 446 PVLFNCSIEENIAYGCDGKASSAD--I-----ENAAKMANAHDFISNFPEKYQTF-VGERGVRLSGGQKQRVAIARALMM 517 (607)
Q Consensus 446 ~~Lf~gTIreNI~~g~~~~~~~~~--i-----~~al~~a~l~~~i~~lp~G~~T~-ige~G~~LSGGQkQRialARAll~ 517 (607)
..+++-||.|++.|...-..+.++ + .+..+.. +++..+ |++.. ....-.+|||||||||+||+||..
T Consensus 464 ~q~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl---~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~aL~~ 538 (993)
T 2ygr_A 464 AEVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL---GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLATQIGS 538 (993)
T ss_dssp GCSSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH---HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH---HHHhhC--CCCccccCCCcccCCHHHHHHHHHHHHHhh
Confidence 346788999999996432234311 1 1111111 223322 44432 445567899999999999999999
Q ss_pred C--CCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCCEEeEecChhHHhhc
Q 007337 518 N--PRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSK 588 (607)
Q Consensus 518 ~--~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~ 588 (607)
+ |++|||||||++||+...+.+.+.|+++. .++|+|+|+|+++.++.||+|++| ++|+|+..|+++++.+.
T Consensus 539 ~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 539 GLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 8 58999999999999999889998888764 479999999999999999999999 69999999999999875
No 76
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=4.5e-19 Score=201.37 Aligned_cols=136 Identities=23% Similarity=0.362 Sum_probs=105.1
Q ss_pred cccccHHHHhhcCCCCCCCHHH-------HHHHHHHcCchHHHHhCCcccccc-ccCCCCCCChhHHHHHHHHHHHhcCC
Q 007337 448 LFNCSIEENIAYGCDGKASSAD-------IENAAKMANAHDFISNFPEKYQTF-VGERGVRLSGGQKQRVAIARALMMNP 519 (607)
Q Consensus 448 Lf~gTIreNI~~g~~~~~~~~~-------i~~al~~a~l~~~i~~lp~G~~T~-ige~G~~LSGGQkQRialARAll~~~ 519 (607)
+..-||.|++.|...-..++++ +.+..+.. +++..+ |++.. ....-.+|||||||||+||+||..+|
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHHH--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhhC--CCCccccCCccccCCHHHHHHHHHHHHHhhCC
Confidence 4677999999986422233311 11222221 123332 44432 34556789999999999999999984
Q ss_pred --CEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEEE------eCCEEeEecChhHHhhc
Q 007337 520 --RILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAVV------SDGEIVESGTHEELLSK 588 (607)
Q Consensus 520 --~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iivl------~~G~Ive~G~~~eL~~~ 588 (607)
++|||||||++||+.....+.+.|+++. .+.|+|+|+|+++.++.||+|++| ++|+|+..|+++++.+.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999999999999899999998875 478999999999999999999999 79999999999999874
No 77
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.76 E-value=1.4e-22 Score=209.03 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=118.6
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcEE---------EE
Q 007337 331 SMTPGALTSFILYSLTVGSSVSGLSS-LYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCPLGDQDGEVE---------LD 400 (607)
Q Consensus 331 ~lt~g~l~~~~~~~~~~~~~l~~l~~-~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~I~---------~~ 400 (607)
.+|.+.+.+++.+...+..+ .+.. ....+..+..+..|+..+++.|................+.++ |+
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~~~~~~~ir~~~~~~i~l~~l~~~g~~~ 152 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYN 152 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSSTTCCEEEEECCCCCCCCHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCCCCceEEEeCCCCCCCCHHHHHhCCCcC
Confidence 68888888887766554433 1111 111122222334555555543221110000000000112345 66
Q ss_pred eEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHH
Q 007337 401 DVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENA 473 (607)
Q Consensus 401 ~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~a 473 (607)
|++| | .++++++|+++++|+.++|+||||||| .++++.+ .|+| ++..+.+..
T Consensus 153 ~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~----~g~i----~i~~~~e~~------- 211 (330)
T 2pt7_A 153 LLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE----ERII----SIEDTEEIV------- 211 (330)
T ss_dssp TSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT----SCEE----EEESSCCCC-------
T ss_pred chhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcEE----EECCeeccc-------
Confidence 6777 6 248999999999999999999999999 3343322 2222 111110110
Q ss_pred HHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCC-eE
Q 007337 474 AKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGR-TV 552 (607)
Q Consensus 474 l~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~-Tv 552 (607)
+. ..++... .+. | |||+||++|||||.++|++++|||||+. + +.+.|+.+..++ |+
T Consensus 212 -----~~----~~~~~i~-~~~--g----gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~~~l~~~~~g~~tv 268 (330)
T 2pt7_A 212 -----FK----HHKNYTQ-LFF--G----GNITSADCLKSCLRMRPDRIILGELRSS---E----AYDFYNVLCSGHKGT 268 (330)
T ss_dssp -----CS----SCSSEEE-EEC--B----TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HHHHHHHHHTTCCCE
T ss_pred -----cc----cchhEEE-EEe--C----CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HHHHHHHHhcCCCEE
Confidence 00 0011000 000 1 8999999999999999999999999992 2 445566555555 79
Q ss_pred EEEccCchhhhhcCEEEEEeCCE
Q 007337 553 LVIAHRLSTVQSADTVAVVSDGE 575 (607)
Q Consensus 553 I~ItHrl~~l~~aD~Iivl~~G~ 575 (607)
|+++|+++....||+|++|++|+
T Consensus 269 i~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 269 LTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEEEcccHHHHHhhhheehhcCC
Confidence 99999999999999999999885
No 78
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.75 E-value=1.8e-18 Score=198.00 Aligned_cols=96 Identities=29% Similarity=0.455 Sum_probs=88.1
Q ss_pred ccCCCCCCChhHHHHHHHHHHHhcCCC--EEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEE
Q 007337 494 VGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 570 (607)
Q Consensus 494 ige~G~~LSGGQkQRialARAll~~~~--IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iiv 570 (607)
......+||||||||++|||||.++|+ +|||||||++||+.....+.+.|+++. .++|+|+|+|+++.+..||+|++
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~ 537 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIID 537 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEE
Confidence 345567899999999999999999877 999999999999999999999999874 37899999999999999999999
Q ss_pred E------eCCEEeEecChhHHhhcC
Q 007337 571 V------SDGEIVESGTHEELLSKG 589 (607)
Q Consensus 571 l------~~G~Ive~G~~~eL~~~~ 589 (607)
| ++|+|+..|+++|+++..
T Consensus 538 lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 538 IGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp EESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EcCCcccCCCEEEEeechhhhhcCc
Confidence 9 899999999999998753
No 79
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.73 E-value=1.1e-17 Score=155.41 Aligned_cols=79 Identities=28% Similarity=0.299 Sum_probs=72.0
Q ss_pred CCCCChhHHHHHHHHHHHh----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE--
Q 007337 498 GVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV-- 571 (607)
Q Consensus 498 G~~LSGGQkQRialARAll----~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl-- 571 (607)
...||||||||++|||++. ++|+++||||||++||+.+++.+.+.|+++.++.++|+|||+..+...||+|+.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 4679999999999999995 6689999999999999999999999999988889999999999999999999855
Q ss_pred eCCEE
Q 007337 572 SDGEI 576 (607)
Q Consensus 572 ~~G~I 576 (607)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 57754
No 80
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.71 E-value=3.1e-20 Score=189.61 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=113.5
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEE-----------------------eeCCCEEEEEcCCCCcc------------
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLK-----------------------LLSGSKIALVGPSGGGK------------ 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~-----------------------i~~Ge~vaiVG~sGsGK------------ 438 (607)
.+.|+++||++.|. |+++++++. +++|+++||+|+|||||
T Consensus 41 ~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 41 GEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45699999999993 567777765 89999999999999999
Q ss_pred -------eEEEccCCCcccccHHHHhhcCC----CCCCCHHHHHHHHHHcCchHHHHhCCcccc-ccccCCCCCCChhHH
Q 007337 439 -------ISIVSQEPVLFNCSIEENIAYGC----DGKASSADIENAAKMANAHDFISNFPEKYQ-TFVGERGVRLSGGQK 506 (607)
Q Consensus 439 -------i~~V~Q~~~Lf~gTIreNI~~g~----~~~~~~~~i~~al~~a~l~~~i~~lp~G~~-T~ige~G~~LSGGQk 506 (607)
+++|+||+++++.|++||+.+.. +...+.+.+.+.++ .+..|.. ..+ ..|||||+
T Consensus 116 ~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~---------~l~~~~~~~~~----~~lS~G~~ 182 (312)
T 3aez_A 116 RWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVT---------SVKSGSDYACA----PVYSHLHY 182 (312)
T ss_dssp TSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHH---------HHHTTCSCEEE----EEEETTTT
T ss_pred ccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHH---------HhCCCcccCCc----ccCChhhh
Confidence 79999999999999999997642 21223344444443 3333443 333 47999999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh--hhcCEEEEEeCC
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV--QSADTVAVVSDG 574 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l--~~aD~Iivl~~G 574 (607)
||+++|||++.+|+|+|||||++.+|+.. ..+.+.+ ..+|+|+|..+.. +..+|.+.+.+|
T Consensus 183 qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 183 DIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF--DFSLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC--SEEEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred hhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc--CcEEEEECCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998632 1233332 3568888877653 234454444443
No 81
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=8.5e-20 Score=194.66 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=124.1
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------------------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------------------------ 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------------------------ 438 (607)
..++++|+++.|+. ...+|+++ |+|++||+++|+|+|||||
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45899999999974 24699999 9999999999999999999
Q ss_pred --------eEEEccC--CCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHH
Q 007337 439 --------ISIVSQE--PVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQR 508 (607)
Q Consensus 439 --------i~~V~Q~--~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQR 508 (607)
++||+|+ +....-|+.+|+.+.. ++... +...+.. +-+...+||||| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-------e~~~~-~~~~v~~------------~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-------EDFRD-RGQHVLL------------IMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-------HHHHT-TTCEEEE------------EEECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-------HHHHh-CCCCHHH------------HHHhHHHHHHHH-HH
Confidence 4677773 3334557777776531 11110 0000111 113356799999 99
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-----CC-----eEEEEccCchhhhhcCEEEEEeCCEEeE
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-----GR-----TVLVIAHRLSTVQSADTVAVVSDGEIVE 578 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-----~~-----TvI~ItHrl~~l~~aD~Iivl~~G~Ive 578 (607)
++|| +++|++ |++||+.+...+.+.++++.+ ++ |++++||+++ .+.||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 899998 999999999999999988755 43 9999999999 88899999999999999
Q ss_pred ecChhHHhh
Q 007337 579 SGTHEELLS 587 (607)
Q Consensus 579 ~G~~~eL~~ 587 (607)
.|+++++..
T Consensus 336 ~~~~~~~~~ 344 (438)
T 2dpy_A 336 SRRLAEAGH 344 (438)
T ss_dssp CHHHHHTTC
T ss_pred eCCHHHccC
Confidence 999988754
No 82
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.68 E-value=4.3e-19 Score=186.90 Aligned_cols=141 Identities=17% Similarity=0.232 Sum_probs=113.2
Q ss_pred CcccccceEEeeCCC--------------------EEEEEcCCCCcc---------------------------eEEEcc
Q 007337 412 HMVLKGITLKLLSGS--------------------KIALVGPSGGGK---------------------------ISIVSQ 444 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge--------------------~vaiVG~sGsGK---------------------------i~~V~Q 444 (607)
+.+|+||||+|++|+ .+||+||||||| .++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 999999999999 268999
Q ss_pred CCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh--HHHHHHHHHHHhc-----
Q 007337 445 EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG--QKQRVAIARALMM----- 517 (607)
Q Consensus 445 ~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG--QkQRialARAll~----- 517 (607)
++...+-|++||+.++.+ ++++.++++..++.+. +..+ . |||| ||||++||||+.+
T Consensus 116 ~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~la~aL~~~~~p~ 178 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDIAKAISMMKKEF 178 (413)
T ss_dssp CSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHHHHHHHHTTCEE
T ss_pred ccccCCeeehHhhcccch----HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHHHHHHHhcCCCe
Confidence 986667899999988743 2356777887776532 2222 2 8999 9999999999999
Q ss_pred -----CCCEEEEeccCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEccCchh--hhh-cCEEE
Q 007337 518 -----NPRILLLDEATSALDAESEYLVQDAMDSLM----------KGRTVLVIAHRLST--VQS-ADTVA 569 (607)
Q Consensus 518 -----~~~IllLDE~TSaLD~~te~~i~~~l~~~~----------~~~TvI~ItHrl~~--l~~-aD~Ii 569 (607)
+|++++||||||+||+.++..+.+.|+++. ..+++++.||.++- ++. ||+|.
T Consensus 179 ~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 179 YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp EEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred EEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999999988887763 12567778998875 443 66663
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.64 E-value=3.4e-16 Score=162.27 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=76.2
Q ss_pred CCChhHHHHHHHHHHHh---------cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEE
Q 007337 500 RLSGGQKQRVAIARALM---------MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAV 570 (607)
Q Consensus 500 ~LSGGQkQRialARAll---------~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iiv 570 (607)
.|||||+||++|||+|. .+|||||||||||+||+...+.+.+.|.++. .|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998863 89999999 454 8999999
Q ss_pred EeCCEEeEecChhHHh
Q 007337 571 VSDGEIVESGTHEELL 586 (607)
Q Consensus 571 l~~G~Ive~G~~~eL~ 586 (607)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999873
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.63 E-value=3.8e-16 Score=181.85 Aligned_cols=155 Identities=17% Similarity=0.149 Sum_probs=110.3
Q ss_pred CcEEEEe-----EEEECCCCCCCcccccceEEeeC-------CCEEEEEcCCCCcc---------------eE-EEccCC
Q 007337 395 GEVELDD-----VWFAYPSRPNHMVLKGITLKLLS-------GSKIALVGPSGGGK---------------IS-IVSQEP 446 (607)
Q Consensus 395 ~~I~~~~-----vsf~y~~~~~~~vL~~isl~i~~-------Ge~vaiVG~sGsGK---------------i~-~V~Q~~ 446 (607)
..|+++| +++.|++ +.++++|+||++++ |+.++|+||||||| ++ ||||++
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~ 826 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEV 826 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSE
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCc
Confidence 4599999 9999953 34799999999987 99999999999999 55 999998
Q ss_pred CcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEec
Q 007337 447 VLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDE 526 (607)
Q Consensus 447 ~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE 526 (607)
. .-|+.|||..- .++.+.+. .|. ..+|+++++ +++||++..+|+++||||
T Consensus 827 ~--~l~v~d~I~~r----------------ig~~d~~~---~~~--------stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 827 C--RLTPIDRVFTR----------------LGASDRIM---SGE--------STFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp E--EECCCSBEEEE----------------CC--------------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred C--CCCHHHHHHHH----------------cCCHHHHh---hch--------hhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 3 66777777321 12222221 122 356777765 999999999999999999
Q ss_pred cCCCCCHHH-HHHHHHHHHHhc-C-CCeEEEEccCchhhhh-cCEEEEEeCCEEe--EecCh
Q 007337 527 ATSALDAES-EYLVQDAMDSLM-K-GRTVLVIAHRLSTVQS-ADTVAVVSDGEIV--ESGTH 582 (607)
Q Consensus 527 ~TSaLD~~t-e~~i~~~l~~~~-~-~~TvI~ItHrl~~l~~-aD~Iivl~~G~Iv--e~G~~ 582 (607)
||+++|+.. ...+.+.|+.+. + ++|+|++||.++.+.. +|++.|+ +|++. +.|+.
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999985 566677776664 3 7899999999998764 8998886 58887 55543
No 85
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.61 E-value=6.7e-19 Score=184.44 Aligned_cols=143 Identities=21% Similarity=0.205 Sum_probs=120.7
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEEcc-----CCCcccccHH
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIVSQ-----EPVLFNCSIE 454 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V~Q-----~~~Lf~gTIr 454 (607)
++|++++ +++|+.++|+||||||| ++||+| ++..|+++|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3567665 88999999999999999 568999 8999999999
Q ss_pred HHhhcCCCCCC-------CHHHHHHHHHHcCchH----------------HH-------------HhCCccccccccCCC
Q 007337 455 ENIAYGCDGKA-------SSADIENAAKMANAHD----------------FI-------------SNFPEKYQTFVGERG 498 (607)
Q Consensus 455 eNI~~g~~~~~-------~~~~i~~al~~a~l~~----------------~i-------------~~lp~G~~T~ige~G 498 (607)
+|+... | +. +++.++.+++.++... -+ ..+|+++++.|++++
T Consensus 204 ~~L~~~-p-d~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl 281 (372)
T 2ewv_A 204 AALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRL 281 (372)
T ss_dssp HHTTSC-C-SEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEE
T ss_pred HHhhhC-c-CEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEe
Confidence 999984 4 45 7788888888876421 11 235779999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCCE--EEEeccCCCCCHH----H-----HHHHHHHHHHhcCCCeEEEEccCchh
Q 007337 499 VRLSGGQKQRVAIARALMMNPRI--LLLDEATSALDAE----S-----EYLVQDAMDSLMKGRTVLVIAHRLST 561 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~I--llLDE~TSaLD~~----t-----e~~i~~~l~~~~~~~TvI~ItHrl~~ 561 (607)
..+||| ||+++||+++.+|+| +|+||+||+||.. + +..++++++...+++|.+.++||++.
T Consensus 282 ~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 282 LPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999 999999999999999 9999999999975 3 45688888888899999999999984
No 86
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.60 E-value=2.7e-18 Score=165.74 Aligned_cols=131 Identities=14% Similarity=0.156 Sum_probs=99.3
Q ss_pred eeCCCEEEEEcCCCCcc--------------eEEEccCCCcccc---cHHHHhhc--CCCCCCCHHHHHHHHHHcCchHH
Q 007337 422 LLSGSKIALVGPSGGGK--------------ISIVSQEPVLFNC---SIEENIAY--GCDGKASSADIENAAKMANAHDF 482 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK--------------i~~V~Q~~~Lf~g---TIreNI~~--g~~~~~~~~~i~~al~~a~l~~~ 482 (607)
.++|+++||+|+||||| ++|++||+++++. |+++|+.+ +.+...+.+++.++++..++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLP 82 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCC
Confidence 57999999999999999 7899999999854 56666544 33323466778888877766554
Q ss_pred HHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCC-------CCHHHHHHHHHHHHHhc--CCCeEE
Q 007337 483 ISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSA-------LDAESEYLVQDAMDSLM--KGRTVL 553 (607)
Q Consensus 483 i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSa-------LD~~te~~i~~~l~~~~--~~~TvI 553 (607)
+.. | .+++..|+++. |+||+++||+++.+|+++++||||++ ||+.++..+.+.+.+.. +++|++
T Consensus 83 ~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~ 155 (211)
T 3asz_A 83 VEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLE 155 (211)
T ss_dssp EEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHH
T ss_pred cCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHH
Confidence 433 3 33333333221 46899999999999999999999999 99999999999887642 589999
Q ss_pred EEccCc
Q 007337 554 VIAHRL 559 (607)
Q Consensus 554 ~ItHrl 559 (607)
.++|+.
T Consensus 156 ~~~~~~ 161 (211)
T 3asz_A 156 GVVAQY 161 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999984
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.59 E-value=7.7e-16 Score=169.05 Aligned_cols=152 Identities=15% Similarity=0.052 Sum_probs=108.6
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc------------------eEEEccCCCcccccHHHHhh
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK------------------ISIVSQEPVLFNCSIEENIA 458 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------------------i~~V~Q~~~Lf~gTIreNI~ 458 (607)
++.+++++.|++- ..+| +..+++|+.++|+|++|||| +.|++|++. .++++|..
T Consensus 258 ~~~~~l~~g~~~l--d~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~---~~l~~~~~ 329 (525)
T 1tf7_A 258 SSNVRVSSGVVRL--DEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESR---AQLLRNAY 329 (525)
T ss_dssp CCCCEECCSCHHH--HHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCH---HHHHHHHH
T ss_pred cccceeecChHHH--HHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCH---HHHHHHHH
Confidence 3455665555320 0133 34899999999999999999 456677762 36666653
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHH----
Q 007337 459 YGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE---- 534 (607)
Q Consensus 459 ~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~---- 534 (607)
-. ..+.+++ ... |+..........|||||+||+++||++..+|+++|+| ||++||..
T Consensus 330 ~~---g~~~~~~----~~~-----------g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~ 390 (525)
T 1tf7_A 330 SW---GMDFEEM----ERQ-----------NLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNN 390 (525)
T ss_dssp TT---SCCHHHH----HHT-----------TSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHH
T ss_pred Hc---CCCHHHH----HhC-----------CCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChH
Confidence 21 1222221 111 2222233344679999999999999999999999999 99999998
Q ss_pred -HHHHHHHHHHHhc-CCCeEEEEccCc----------hhhh-hcCEEEEEeCCE
Q 007337 535 -SEYLVQDAMDSLM-KGRTVLVIAHRL----------STVQ-SADTVAVVSDGE 575 (607)
Q Consensus 535 -te~~i~~~l~~~~-~~~TvI~ItHrl----------~~l~-~aD~Iivl~~G~ 575 (607)
..+.+.+.++.+. .++|+|+|+|.. ..+. .||+|++|++|+
T Consensus 391 ~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 391 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 7888777776553 478999999998 5554 599999999886
No 88
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.59 E-value=1.2e-15 Score=167.36 Aligned_cols=76 Identities=22% Similarity=0.348 Sum_probs=71.3
Q ss_pred CCC-ChhHHHHHHHHHHHhcCC--CEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 007337 499 VRL-SGGQKQRVAIARALMMNP--RILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 574 (607)
Q Consensus 499 ~~L-SGGQkQRialARAll~~~--~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G 574 (607)
.+| |||||||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999887789999999999999999999999654
No 89
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.59 E-value=2.1e-15 Score=173.52 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=111.4
Q ss_pred CcEEEEeEEEECCCC--CCCcccccceEEeeCCCEEEEEcCCCCcc------e----------EEEccCCCcccccHHHH
Q 007337 395 GEVELDDVWFAYPSR--PNHMVLKGITLKLLSGSKIALVGPSGGGK------I----------SIVSQEPVLFNCSIEEN 456 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~--~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------i----------~~V~Q~~~Lf~gTIreN 456 (607)
+.|++++...-+-+. ....+++|+||++++|+.++|+||||||| + ++||++...+
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~------- 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEV------- 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEE-------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccc-------
Confidence 458888865433221 13578999999999999999999999999 2 2333332110
Q ss_pred hhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccC---CCCCCChhHHHHHHHHHHH--hcCCCEEEEeccCCCC
Q 007337 457 IAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGE---RGVRLSGGQKQRVAIARAL--MMNPRILLLDEATSAL 531 (607)
Q Consensus 457 I~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige---~G~~LSGGQkQRialARAl--l~~~~IllLDE~TSaL 531 (607)
+ .. +..-+.+|. --..+|+|++++..+|+++ ..+|+++||||||+++
T Consensus 703 ---~---~~----------------------d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 703 ---S---IV----------------------DCILARVGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754 (934)
T ss_dssp ---E---CC----------------------SEEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred ---h---HH----------------------HHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 0 00 011122221 1246899999999999999 8999999999999999
Q ss_pred CHHHHHHH-HHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHH
Q 007337 532 DAESEYLV-QDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEEL 585 (607)
Q Consensus 532 D~~te~~i-~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL 585 (607)
|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...++.+++
T Consensus 755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 755 STYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 99866665 44444443 38999999999999999999999999999988877665
No 90
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.58 E-value=5.2e-18 Score=163.44 Aligned_cols=145 Identities=16% Similarity=0.173 Sum_probs=87.6
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc--------------------------------eEEEccCCCccc-ccHHHHhh
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------ISIVSQEPVLFN-CSIEENIA 458 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------i~~V~Q~~~Lf~-gTIreNI~ 458 (607)
.++++| .+|++||+++|+||||||| ++|++|++.+|. -|+++|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 468888 7999999999999999999 568888877764 34455543
Q ss_pred cCC-------CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH---HHhcCCCEEEEeccC
Q 007337 459 YGC-------DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR---ALMMNPRILLLDEAT 528 (607)
Q Consensus 459 ~g~-------~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR---All~~~~IllLDE~T 528 (607)
... ....+.+++.+.++.+.- .+ + ...++|.+.++-..++ |++.+|++++|||||
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~--~~----------~---~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~ 151 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVP--VL----------I---EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARL 151 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCC--EE----------E---ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCe--EE----------E---EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHH
Confidence 110 001123334433332200 00 0 0112333333333333 889999999999999
Q ss_pred CCC----CHHHHHHHHHHHHHhc--CCCeEEEEccCchhhh-hcCEEEEEeC
Q 007337 529 SAL----DAESEYLVQDAMDSLM--KGRTVLVIAHRLSTVQ-SADTVAVVSD 573 (607)
Q Consensus 529 SaL----D~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l~-~aD~Iivl~~ 573 (607)
+++ |+...+.+.+.++++. .+.|+|+|||+++.+. .||+|++|..
T Consensus 152 ~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 152 IGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred HhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 998 6778889998888764 3789999999999775 5999999853
No 91
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.56 E-value=2.2e-16 Score=160.34 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=93.0
Q ss_pred ccceEEeeCCCEEEEEcCCCCcc------------------------------------------eEEEccCCC-cc-cc
Q 007337 416 KGITLKLLSGSKIALVGPSGGGK------------------------------------------ISIVSQEPV-LF-NC 451 (607)
Q Consensus 416 ~~isl~i~~Ge~vaiVG~sGsGK------------------------------------------i~~V~Q~~~-Lf-~g 451 (607)
+++||++++|+.++||||||||| ++|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 45788899999999999999999 567777765 44 45
Q ss_pred cHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC--EEEEeccCC
Q 007337 452 SIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATS 529 (607)
Q Consensus 452 TIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~--IllLDE~TS 529 (607)
|++||+.++.....+ . ..++.+++.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 171 ~v~e~l~~~~~~~~d-~---~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD-V---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHTTCS-E---EEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHcCCc-c---hHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 777777654210110 0 11122222111 11122 2378 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEcc---------Cchhhh-hcCEEEEEeCCEE
Q 007337 530 ALDAESEYLVQDAMDSLMKGRTVLVIAH---------RLSTVQ-SADTVAVVSDGEI 576 (607)
Q Consensus 530 aLD~~te~~i~~~l~~~~~~~TvI~ItH---------rl~~l~-~aD~Iivl~~G~I 576 (607)
++|+.+.. +.+.+. .+.|+|++|| .++.+. ..+.|..+..|+.
T Consensus 232 glD~~~~~---~~~~~~-~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHHH-TCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHHh-cCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 223221 3799999999 334443 4679999999964
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.56 E-value=3.5e-18 Score=170.16 Aligned_cols=151 Identities=21% Similarity=0.220 Sum_probs=120.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEEc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIVS 443 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V~ 443 (607)
++++|++|. ++|+|+| +++|+.++|+||||||| +++++
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~ 76 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVN 76 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEE
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeee
Confidence 456666642 4899999 99999999999999999 23455
Q ss_pred c-----CCCcccccHHHHhhcCCCCCC-------CHHHHHHHHHHcCc-----------------hHHH-----------
Q 007337 444 Q-----EPVLFNCSIEENIAYGCDGKA-------SSADIENAAKMANA-----------------HDFI----------- 483 (607)
Q Consensus 444 Q-----~~~Lf~gTIreNI~~g~~~~~-------~~~~i~~al~~a~l-----------------~~~i----------- 483 (607)
| ++..|..+|+.|+... | +. |.+.++++++.+.- +..+
T Consensus 77 q~~~gl~~~~l~~~la~aL~~~-p-~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~ 154 (261)
T 2eyu_A 77 QREVGEDTKSFADALRAALRED-P-DVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQV 154 (261)
T ss_dssp EEEBTTTBSCHHHHHHHHHHHC-C-SEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHhhC-C-CEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchH
Confidence 5 5556788899998874 4 33 77777777765431 1111
Q ss_pred -HhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCE--EEEeccCCCCCHHH---------HHHHHHHHHHhcCCCe
Q 007337 484 -SNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRI--LLLDEATSALDAES---------EYLVQDAMDSLMKGRT 551 (607)
Q Consensus 484 -~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~I--llLDE~TSaLD~~t---------e~~i~~~l~~~~~~~T 551 (607)
..+++++++.|++++.++||| ||+++||+++.+|+| +|+||+||++|... +..++++++...+++|
T Consensus 155 ~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t 232 (261)
T 2eyu_A 155 RIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLI 232 (261)
T ss_dssp HHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSS
T ss_pred HHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCC
Confidence 235678999999999999999 999999999999999 99999999999873 4578888888889999
Q ss_pred EEEEccCch
Q 007337 552 VLVIAHRLS 560 (607)
Q Consensus 552 vI~ItHrl~ 560 (607)
.+.++||++
T Consensus 233 ~~~~a~r~~ 241 (261)
T 2eyu_A 233 TLEDAMEAS 241 (261)
T ss_dssp CHHHHHHHC
T ss_pred CHHHHHHHh
Confidence 999999987
No 93
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.55 E-value=2.7e-15 Score=169.70 Aligned_cols=137 Identities=18% Similarity=0.207 Sum_probs=92.9
Q ss_pred CCcEEEEeEEEECCCC--CCCcccccceEEeeCCCEEEEEcCCCCcc------eE---EEccCCCcccccHHHHhhcCCC
Q 007337 394 DGEVELDDVWFAYPSR--PNHMVLKGITLKLLSGSKIALVGPSGGGK------IS---IVSQEPVLFNCSIEENIAYGCD 462 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~--~~~~vL~~isl~i~~Ge~vaiVG~sGsGK------i~---~V~Q~~~Lf~gTIreNI~~g~~ 462 (607)
.+.|+++++ ++|-- .+.++++|+||+ |+.++|+||||||| ++ +.+|...+.... +. .+
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~-~~--~i--- 616 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAE-EA--HL--- 616 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSS-EE--EE---
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehh-cc--ce---
Confidence 356899987 45531 135799999999 99999999999999 11 112321111000 00 00
Q ss_pred CCCCHHHHHHHHHHcCchHHHHhCCccccccccC---CCCCCChhHHHHHHHHHHH--hcCCCEEEEecc---CCCCCHH
Q 007337 463 GKASSADIENAAKMANAHDFISNFPEKYQTFVGE---RGVRLSGGQKQRVAIARAL--MMNPRILLLDEA---TSALDAE 534 (607)
Q Consensus 463 ~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige---~G~~LSGGQkQRialARAl--l~~~~IllLDE~---TSaLD~~ 534 (607)
+.- + .+-+.++- -...+|+|++|++.+|+++ +.+|+++||||| ||++|..
T Consensus 617 ---------------~~v------~-~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~ 674 (765)
T 1ewq_A 617 ---------------PLF------D-GIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGV 674 (765)
T ss_dssp ---------------CCC------S-EEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHH
T ss_pred ---------------eeH------H-HhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHH
Confidence 000 0 01111110 0124799999999999999 999999999999 9999998
Q ss_pred HH-HHHHHHHHHhcCCCeEEEEccCchhhhhc
Q 007337 535 SE-YLVQDAMDSLMKGRTVLVIAHRLSTVQSA 565 (607)
Q Consensus 535 te-~~i~~~l~~~~~~~TvI~ItHrl~~l~~a 565 (607)
+. ..+.+.|.+ .++|+|++||..+....+
T Consensus 675 ~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 675 AIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 75 578888877 589999999998877655
No 94
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.54 E-value=1.2e-16 Score=159.83 Aligned_cols=114 Identities=17% Similarity=0.210 Sum_probs=79.4
Q ss_pred EEEEEcCCCCcc---------------------------------eEEEccCCCcccc-cHHHHhhcCCCCCCC---HHH
Q 007337 427 KIALVGPSGGGK---------------------------------ISIVSQEPVLFNC-SIEENIAYGCDGKAS---SAD 469 (607)
Q Consensus 427 ~vaiVG~sGsGK---------------------------------i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~---~~~ 469 (607)
.+|||||||||| ++|++|++.++.. |+.||+.||.. ... .+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~-~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ-INNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC-SBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh-cccHHHHHH
Confidence 489999999999 8999999988755 99999999863 221 123
Q ss_pred HHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCC
Q 007337 470 IENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG 549 (607)
Q Consensus 470 i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~ 549 (607)
+.+.++ .++...++ ..||||||||+++|||+.. +++|||||+.||+.. ..+.+.|. +.
T Consensus 83 i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~---~~ 140 (270)
T 3sop_A 83 IEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLS---KV 140 (270)
T ss_dssp HHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHH---TT
T ss_pred HHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHH---hc
Confidence 333333 23322222 2599999999999999875 999999999999986 33334443 34
Q ss_pred CeEEEEccCchhhh
Q 007337 550 RTVLVIAHRLSTVQ 563 (607)
Q Consensus 550 ~TvI~ItHrl~~l~ 563 (607)
+++|+|.|+.+.+.
T Consensus 141 ~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 141 VNIIPVIAKADTMT 154 (270)
T ss_dssp SEEEEEETTGGGSC
T ss_pred CcEEEEEeccccCC
Confidence 89999999987664
No 95
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.52 E-value=4.5e-16 Score=160.99 Aligned_cols=171 Identities=16% Similarity=0.216 Sum_probs=126.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------eEEEccCCCcccccHHHHhh
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------ISIVSQEPVLFNCSIEENIA 458 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i~~V~Q~~~Lf~gTIreNI~ 458 (607)
.++.+++++.|+. ...+|+++ |+|.+||+++|+|+||||| +.++.+++ ..+++.+.
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~----~ev~~~i~ 117 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG----REVNEFLA 117 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH----HHHHHHHT
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH----HHHHHHHH
Confidence 4788999999974 34699999 9999999999999999999 44555442 12333221
Q ss_pred ------------cCCC-CCCCHHHHHHHHHHcCchHHHHhCCccccccc-cCCCCCCChhHHHHHHHHHHHhcCCCEEEE
Q 007337 459 ------------YGCD-GKASSADIENAAKMANAHDFISNFPEKYQTFV-GERGVRLSGGQKQRVAIARALMMNPRILLL 524 (607)
Q Consensus 459 ------------~g~~-~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~i-ge~G~~LSGGQkQRialARAll~~~~IllL 524 (607)
+... .....+++..+...+.+.+.... .|.+..+ -+.-.+||+|| ||+++| +.+|++
T Consensus 118 ~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 118 LLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp TSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred hhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 1110 01224556666666666555443 2433211 13456899999 999999 688887
Q ss_pred eccCCCCCHHHHHHHHHHHHHhc---CCC-----eEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHh
Q 007337 525 DEATSALDAESEYLVQDAMDSLM---KGR-----TVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 525 DE~TSaLD~~te~~i~~~l~~~~---~~~-----TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
|+++|+.....+.+.++++. ++. |++++||+++ -+-||++++|.+|+|+..|+.+++.
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~ 254 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEEN 254 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTT
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcC
Confidence 99999999999999998875 256 8999999999 6789999999999999999887763
No 96
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.52 E-value=8.3e-16 Score=159.05 Aligned_cols=137 Identities=20% Similarity=0.268 Sum_probs=93.9
Q ss_pred cceEEeeCCCEEEEEcCCCCcc------------------------------------------eEEEccCCC-c-cccc
Q 007337 417 GITLKLLSGSKIALVGPSGGGK------------------------------------------ISIVSQEPV-L-FNCS 452 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGK------------------------------------------i~~V~Q~~~-L-f~gT 452 (607)
++||++++|+.++|||+||||| ++|++|++. + ...|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 5788899999999999999999 567777765 4 3557
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC--EEEEeccCCC
Q 007337 453 IEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR--ILLLDEATSA 530 (607)
Q Consensus 453 IreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~--IllLDE~TSa 530 (607)
++|||.++.....+ . ..++.+++.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 229 v~e~l~~~~~~~~d-~---~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 229 LSKAVKRGKEEGYD-V---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHTTCS-E---EEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHhCCCH-H---HHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 77887664210111 0 11122222111 11112 2378 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEcc---------Cchhh-hhcCEEEEEeCCEE
Q 007337 531 LDAESEYLVQDAMDSLMKGRTVLVIAH---------RLSTV-QSADTVAVVSDGEI 576 (607)
Q Consensus 531 LD~~te~~i~~~l~~~~~~~TvI~ItH---------rl~~l-~~aD~Iivl~~G~I 576 (607)
+|+.+... .+.+. .+.|+|++|| .++.+ ...+.|..+..|+.
T Consensus 290 lD~~~~~~---~~~~~-~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQAR---EFNEV-VGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHHH---HHHHH-TCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHHH---HHHHh-cCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99986532 23221 3799999999 33444 34679999999963
No 97
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.52 E-value=9.4e-17 Score=162.15 Aligned_cols=111 Identities=13% Similarity=0.133 Sum_probs=80.3
Q ss_pred eCCCEEEEEcCCCCcc--------------------eEEEccCCCcccccHHHHhhcCCCCC--CCHHHHHHHHHHcCch
Q 007337 423 LSGSKIALVGPSGGGK--------------------ISIVSQEPVLFNCSIEENIAYGCDGK--ASSADIENAAKMANAH 480 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK--------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~--~~~~~i~~al~~a~l~ 480 (607)
+++.+|+|+|+||||| +.+|+||+++|+.++++|+.++.+.. .+....-++.....+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 3578999999999999 34559999999999999998753200 0000001122233456
Q ss_pred HHHHhCCcccccc------ccCCCCCCChhHHHHHHHH--HHHhcCCCEEEEeccCCCCCHHH
Q 007337 481 DFISNFPEKYQTF------VGERGVRLSGGQKQRVAIA--RALMMNPRILLLDEATSALDAES 535 (607)
Q Consensus 481 ~~i~~lp~G~~T~------ige~G~~LSGGQkQRialA--RAll~~~~IllLDE~TSaLD~~t 535 (607)
+++..+++|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|+++
T Consensus 109 ~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 109 EVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 7899999998764 4566889999999999998 666 999999999999999864
No 98
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.51 E-value=2.8e-14 Score=147.85 Aligned_cols=78 Identities=31% Similarity=0.404 Sum_probs=69.5
Q ss_pred CCCCChhHHH------HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccCchhhhhcCEEEE
Q 007337 498 GVRLSGGQKQ------RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHRLSTVQSADTVAV 570 (607)
Q Consensus 498 G~~LSGGQkQ------RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l~~aD~Iiv 570 (607)
-..||||||| |+++|||+..+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998764 46799999999988889999999
Q ss_pred Ee--CCE
Q 007337 571 VS--DGE 575 (607)
Q Consensus 571 l~--~G~ 575 (607)
|+ +|.
T Consensus 326 l~~~~g~ 332 (339)
T 3qkt_A 326 ISLENGS 332 (339)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 85 454
No 99
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.51 E-value=6.4e-14 Score=142.40 Aligned_cols=151 Identities=16% Similarity=0.142 Sum_probs=93.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc------------------eEEEccCCCcccccHHHHhhcC--CCCCC-------
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK------------------ISIVSQEPVLFNCSIEENIAYG--CDGKA------- 465 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK------------------i~~V~Q~~~Lf~gTIreNI~~g--~~~~~------- 465 (607)
++|+++++.+++|+.++|+|++|||| +.|+..+.. ...++..+... .. ..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~--~~~~~~r~~~~~~~~-~~~~~~~l~ 99 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES--VEETAEDLIGLHNRV-RLRQSDSLK 99 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC--HHHHHHHHHHHHTTC-CGGGCHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC--HHHHHHHHHHHHcCC-Chhhccccc
Confidence 47999999999999999999999999 233333211 11122222110 00 11
Q ss_pred ----CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhH-HHHHHHHHHHhcCCCEEEEeccCC---C---CCH-
Q 007337 466 ----SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQ-KQRVAIARALMMNPRILLLDEATS---A---LDA- 533 (607)
Q Consensus 466 ----~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQ-kQRialARAll~~~~IllLDE~TS---a---LD~- 533 (607)
+++++.++++. .++..+-+ +.+...++|.+| +||+. |+|+..+|+++|+||||+ + +|.
T Consensus 100 ~~~~~~~~~~~~~~~-----~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~ 169 (296)
T 1cr0_A 100 REIIENGKFDQWFDE-----LFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER 169 (296)
T ss_dssp HHHHHHTHHHHHHHH-----HHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred cCCCCHHHHHHHHHH-----HhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence 11112221111 11112211 223335689999 77777 999999999999999999 4 444
Q ss_pred HHHHHHHHHHHHhcC--CCeEEEEccCc--h--------------------hh-hhcCEEEEEeCCEE
Q 007337 534 ESEYLVQDAMDSLMK--GRTVLVIAHRL--S--------------------TV-QSADTVAVVSDGEI 576 (607)
Q Consensus 534 ~te~~i~~~l~~~~~--~~TvI~ItHrl--~--------------------~l-~~aD~Iivl~~G~I 576 (607)
.....+.+.|+++.+ ++|+|+++|.. + .+ ..||+|++|++|+.
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455677777776643 79999999995 3 34 47999999999875
No 100
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.49 E-value=4.6e-14 Score=148.09 Aligned_cols=75 Identities=29% Similarity=0.376 Sum_probs=68.6
Q ss_pred CCCChhHHHHH------HHHHHHhcC-CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEE
Q 007337 499 VRLSGGQKQRV------AIARALMMN-PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVV 571 (607)
Q Consensus 499 ~~LSGGQkQRi------alARAll~~-~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl 571 (607)
..|||||+||+ ++|||+..+ |+++||||||++||+.+...+.+.|.++.+++|+|+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 47999999988 678999999 99999999999999999999999999875567999999999877889999999
Q ss_pred eC
Q 007337 572 SD 573 (607)
Q Consensus 572 ~~ 573 (607)
++
T Consensus 359 ~k 360 (371)
T 3auy_A 359 KK 360 (371)
T ss_dssp EE
T ss_pred Ee
Confidence 73
No 101
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.47 E-value=8.6e-15 Score=144.65 Aligned_cols=146 Identities=13% Similarity=0.107 Sum_probs=90.0
Q ss_pred CCcccccceEEeeCCCEEEEEcCCCCcc----------------------eEEEccCCCcccccHHHHhhcCCC------
Q 007337 411 NHMVLKGITLKLLSGSKIALVGPSGGGK----------------------ISIVSQEPVLFNCSIEENIAYGCD------ 462 (607)
Q Consensus 411 ~~~vL~~isl~i~~Ge~vaiVG~sGsGK----------------------i~~V~Q~~~Lf~gTIreNI~~g~~------ 462 (607)
+.++|+|+||++++|+++||+||+|||| ++|++|+++...-|..+|+.+...
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~ 90 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDH 90 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTS
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCC
Confidence 4579999999999999999999999999 248999975445699999865321
Q ss_pred -CCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHH
Q 007337 463 -GKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD 541 (607)
Q Consensus 463 -~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~ 541 (607)
...+.+++.+.++. +.++.+..+ ..||+||+||+++ |++..+|+++|||||....|..
T Consensus 91 ~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~------- 149 (245)
T 2jeo_A 91 PDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE------- 149 (245)
T ss_dssp GGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH-------
T ss_pred cccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCccccccHH-------
Confidence 01222333333332 223444443 4699999999988 6888999999999998887764
Q ss_pred HHHHhcCCCeEEEEccCch-hhhh-cCEEEEEeCCEEeEecChhHHhh
Q 007337 542 AMDSLMKGRTVLVIAHRLS-TVQS-ADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 542 ~l~~~~~~~TvI~ItHrl~-~l~~-aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
+.++ .+.|++++||... ..+. ++.+ ++|+ +.+++.+
T Consensus 150 -l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 150 -IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp -HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred -HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 2233 3789999999743 3333 3323 6664 5666654
No 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.46 E-value=1.7e-15 Score=143.05 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=68.4
Q ss_pred ccccCCCCCCChhHHHHH-HHHH---HHhcCCCEEEEec--cCCCCCHHHHHHHHHHHHHhcCCCeEEE--Ec--cCchh
Q 007337 492 TFVGERGVRLSGGQKQRV-AIAR---ALMMNPRILLLDE--ATSALDAESEYLVQDAMDSLMKGRTVLV--IA--HRLST 561 (607)
Q Consensus 492 T~ige~G~~LSGGQkQRi-alAR---All~~~~IllLDE--~TSaLD~~te~~i~~~l~~~~~~~TvI~--It--Hrl~~ 561 (607)
.++|+.+..+|||||+++ +++| |+.++|+++|||| ||..+|....+.+.+.+.. .+|+|+ ++ |+.+
T Consensus 75 ~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~- 150 (189)
T 2i3b_A 75 CRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP- 150 (189)
T ss_dssp EESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-
T ss_pred cccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-
Confidence 478999999999999999 5566 7899999999999 8888999877777766653 456664 44 9876
Q ss_pred hhhcCEEEEEeCCEEeEec
Q 007337 562 VQSADTVAVVSDGEIVESG 580 (607)
Q Consensus 562 l~~aD~Iivl~~G~Ive~G 580 (607)
...+|+|..+++|+|++-.
T Consensus 151 ~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 151 LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CTTHHHHHTTCCSEEEECC
T ss_pred hHHHHHHeecCCcEEEEeC
Confidence 5677888889999998754
No 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.45 E-value=1.5e-13 Score=147.21 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=68.9
Q ss_pred CCCCChhHHHHHHHHHHHh----cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccCchhhhhcCEEEEEe
Q 007337 498 GVRLSGGQKQRVAIARALM----MNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 498 G~~LSGGQkQRialARAll----~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHrl~~l~~aD~Iivl~ 572 (607)
...||||||||++|||++. ++||++|||||||+||+.+...+.+.|.+... +.|+|+|||+...+..||++++|.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 3469999999999999999 68999999999999999999999999988753 679999999999999999999986
No 104
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.42 E-value=9.7e-17 Score=153.33 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=100.2
Q ss_pred eCCCEEEEEcCCCCcc-------e--------------------------EEE-----------ccCCCcccccHHHHhh
Q 007337 423 LSGSKIALVGPSGGGK-------I--------------------------SIV-----------SQEPVLFNCSIEENIA 458 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK-------i--------------------------~~V-----------~Q~~~Lf~gTIreNI~ 458 (607)
++|++++|+||||||| . .|. +|++++|++|+++|+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~- 80 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNL- 80 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEE-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCcc-
Confidence 5899999999999999 0 022 467788999999998
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHH-HHhcCCCEEEEeccCCCCCHHHHH
Q 007337 459 YGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIAR-ALMMNPRILLLDEATSALDAESEY 537 (607)
Q Consensus 459 ~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialAR-All~~~~IllLDE~TSaLD~~te~ 537 (607)
+|. ++++++++++.....-+ ...|+|+++.... ++ .|| +++++|++++|||+||++|.++|+
T Consensus 81 ~g~----~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 81 YGT----SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp EEE----EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred CCC----CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 763 57889999986433221 2356788876432 22 677 899999999999999999999999
Q ss_pred HHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhh
Q 007337 538 LVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 538 ~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
.|++.|.+..++ +.++| ++ ..+|+|+|+++ -..++++|.+
T Consensus 144 ~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 144 SLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp HHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 999999876544 46678 45 88999999875 2345555543
No 105
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.42 E-value=8.1e-14 Score=159.91 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=94.3
Q ss_pred CcEEEEeEEEECC------CCCCCcccccceEEeeCCCEEEEEcCCCCcc---------eEEEccCCCcccccHHHHhhc
Q 007337 395 GEVELDDVWFAYP------SRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------ISIVSQEPVLFNCSIEENIAY 459 (607)
Q Consensus 395 ~~I~~~~vsf~y~------~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------i~~V~Q~~~Lf~gTIreNI~~ 459 (607)
+.|++++.. +| ...+..+++|+||++++|+.++|+||||||| +.+.+|........ .-.+
T Consensus 639 ~~i~i~~~r--HP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~---~~~i 713 (918)
T 3thx_B 639 RKIVIKNGR--HPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAE---EATI 713 (918)
T ss_dssp CEEEEEEEC--CHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSS---EEEE
T ss_pred CcEEEEecc--chhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccch---hhhh
Confidence 357777753 22 1114579999999999999999999999999 21222211100000 0000
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHH
Q 007337 460 GCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLV 539 (607)
Q Consensus 460 g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i 539 (607)
+ ..+ +++...++.+. +..+-..+|+|++|+..|+|+ ..+|+++||||||+++|+.....+
T Consensus 714 ~---~~d-----~i~~~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i 773 (918)
T 3thx_B 714 G---IVD-----GIFTRMGAADN-----------IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAI 773 (918)
T ss_dssp E---CCS-----EEEEEC---------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHH
T ss_pred h---HHH-----HHHHhCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHH
Confidence 0 000 00111111111 122335789999999999999 899999999999999999977666
Q ss_pred H-HHHHHhc--CCCeEEEEccCchhhhhcCEE
Q 007337 540 Q-DAMDSLM--KGRTVLVIAHRLSTVQSADTV 568 (607)
Q Consensus 540 ~-~~l~~~~--~~~TvI~ItHrl~~l~~aD~I 568 (607)
. ..++.+. .++|+|++||.++....||+.
T Consensus 774 ~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 774 AYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred HHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 6 4454442 489999999999887766643
No 106
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.41 E-value=2.2e-15 Score=139.79 Aligned_cols=43 Identities=12% Similarity=0.147 Sum_probs=40.6
Q ss_pred HcCchHHHHh-CCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEE
Q 007337 476 MANAHDFISN-FPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRIL 522 (607)
Q Consensus 476 ~a~l~~~i~~-lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~Il 522 (607)
.+++++++.. || |+||.|+|+ |||||||||+||||++++|+++
T Consensus 82 ~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 82 GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 7899999999 99 999999995 9999999999999999999874
No 107
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.39 E-value=5.3e-15 Score=162.42 Aligned_cols=151 Identities=19% Similarity=0.169 Sum_probs=90.5
Q ss_pred CcccccceE-EeeCCCEEEEEcCCCCcce---------EEEc-cCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCch
Q 007337 412 HMVLKGITL-KLLSGSKIALVGPSGGGKI---------SIVS-QEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAH 480 (607)
Q Consensus 412 ~~vL~~isl-~i~~Ge~vaiVG~sGsGKi---------~~V~-Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~ 480 (607)
.++|+|+|+ .|++|+.++|+|||||||- +..+ .+..++ .-|. + +..++.+..+..+..
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~--------v~g~--~-~~~~~~~~~~~~g~~ 93 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF--------VTFE--E-TPQDIIKNARSFGWD 93 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE--------EESS--S-CHHHHHHHHGGGTCC
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE--------EEEe--C-CHHHHHHHHHHcCCC
Confidence 479999999 9999999999999999991 1111 111110 0011 1 222232222222221
Q ss_pred -HHHHhCCc-cccccc-cCCC----CCCChhHHHHHHHHHHHh-cCCCEEEEeccCCC-----CCHHHHHHHHHHHHHhc
Q 007337 481 -DFISNFPE-KYQTFV-GERG----VRLSGGQKQRVAIARALM-MNPRILLLDEATSA-----LDAESEYLVQDAMDSLM 547 (607)
Q Consensus 481 -~~i~~lp~-G~~T~i-ge~G----~~LSGGQkQRialARAll-~~~~IllLDE~TSa-----LD~~te~~i~~~l~~~~ 547 (607)
+....-+. -+.+.- .+.. ..+.- ..+.-.++++|- .+|++++|||||+. +|+...+.+.+.++.+.
T Consensus 94 ~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~ 172 (525)
T 1tf7_A 94 LAKLVDEGKLFILDASPDPEGQEVVGGFDL-SALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLK 172 (525)
T ss_dssp HHHHHHTTSEEEEECCCCSSCCSCCSSHHH-HHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHhhccCcEEEEecCcccchhhhhcccCH-HHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 00000000 000000 0000 11111 234556677774 68999999999985 58898888888887663
Q ss_pred -CCCeEEEEccCchhh---------hh-cCEEEEEeCC
Q 007337 548 -KGRTVLVIAHRLSTV---------QS-ADTVAVVSDG 574 (607)
Q Consensus 548 -~~~TvI~ItHrl~~l---------~~-aD~Iivl~~G 574 (607)
.++|+|+|||+++.+ .. ||+|++|++|
T Consensus 173 ~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 173 QIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp HHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 489999999999874 44 9999999984
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.39 E-value=2.6e-14 Score=148.34 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=93.5
Q ss_pred ccccc-eEEeeCCCEEEEEcCCCCcc------eEEEccCCCcc---cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHH
Q 007337 414 VLKGI-TLKLLSGSKIALVGPSGGGK------ISIVSQEPVLF---NCSIEENIAYGCDGKASSADIENAAKMANAHDFI 483 (607)
Q Consensus 414 vL~~i-sl~i~~Ge~vaiVG~sGsGK------i~~V~Q~~~Lf---~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i 483 (607)
.|+++ ++.|++|+.++|+||+|||| ++..-|.+.-. .|++ |.+........+++...++..++...
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~v---i~i~~e~~~~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV---IWIDTENTFRPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEE---EEEESSSCCCHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeE---EEEeCCCCCCHHHHHHHHHHcCCCHH-
Confidence 46665 68999999999999999999 22222211000 1110 11111111234556666665554322
Q ss_pred HhCCccccccccCCCCCCChhHHHHHHHHHHHh-------cCCCEEEEeccCCCCCHHH------------HHHHHHHHH
Q 007337 484 SNFPEKYQTFVGERGVRLSGGQKQRVAIARALM-------MNPRILLLDEATSALDAES------------EYLVQDAMD 544 (607)
Q Consensus 484 ~~lp~G~~T~ige~G~~LSGGQkQRialARAll-------~~~~IllLDE~TSaLD~~t------------e~~i~~~l~ 544 (607)
.+-+.. .+.. ..-|++|+|++.++|+++ .+|+++|+||||+.+|++. -+.+.+.|.
T Consensus 195 -~v~~ni--~~~~--~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~ 269 (349)
T 1pzn_A 195 -EVLKHI--YVAR--AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLH 269 (349)
T ss_dssp -HHGGGE--EEEE--CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred -HHhhCE--EEEe--cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHH
Confidence 111111 0111 012688999999999999 6899999999999999863 134444455
Q ss_pred Hhc--CCCeEEEEccCchhhhh-cCEEEEEeCCEEeEecChhHHh
Q 007337 545 SLM--KGRTVLVIAHRLSTVQS-ADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 545 ~~~--~~~TvI~ItHrl~~l~~-aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
++. .++|+|+++|....... ++.+.+...|++++.+.+..|.
T Consensus 270 ~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 270 RLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp HHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred HHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 443 37899999998765432 2446778889999888877764
No 109
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.35 E-value=2.3e-14 Score=150.14 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=62.9
Q ss_pred ccccceEEeeC--CCEEEEEcCCCCcc------------------------------------------eEEEccCCCcc
Q 007337 414 VLKGITLKLLS--GSKIALVGPSGGGK------------------------------------------ISIVSQEPVLF 449 (607)
Q Consensus 414 vL~~isl~i~~--Ge~vaiVG~sGsGK------------------------------------------i~~V~Q~~~Lf 449 (607)
+.+.|+++|++ |++++|+|+||||| |++++|++.+|
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35689999999 99999999999999 12334445556
Q ss_pred cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCcc--ccc--------cccCCCCCCChhHHHHHHHHHHH---h
Q 007337 450 NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEK--YQT--------FVGERGVRLSGGQKQRVAIARAL---M 516 (607)
Q Consensus 450 ~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G--~~T--------~ige~G~~LSGGQkQRialARAl---l 516 (607)
++|++|||.+++. +..+..............++..++.+ ++. +..++|.++|+||+||++++|+| +
T Consensus 237 ~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~ 315 (365)
T 1lw7_A 237 AVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLL 315 (365)
T ss_dssp HHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHH
T ss_pred HHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHH
Confidence 6666666666543 33333444444444444555554433 222 11244555666666666666666 5
Q ss_pred c--CCCEEEEeccC
Q 007337 517 M--NPRILLLDEAT 528 (607)
Q Consensus 517 ~--~~~IllLDE~T 528 (607)
+ +++|+++||||
T Consensus 316 ~~~~~~ililde~~ 329 (365)
T 1lw7_A 316 DKYKVPYIEIESPS 329 (365)
T ss_dssp HGGGCCCEEEECSS
T ss_pred HHcCCCEEEeCCCC
Confidence 4 56666666664
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=6.8e-14 Score=147.79 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=81.9
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc--------------------------------eEEE
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK--------------------------------ISIV 442 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK--------------------------------i~~V 442 (607)
+.|+++|++++|+. ..+++|+||+| +|||+||||| ++++
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v 80 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVL 80 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEE
Confidence 45899999999964 36999999998 9999999999 5677
Q ss_pred ccCCCcc-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCC-
Q 007337 443 SQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPR- 520 (607)
Q Consensus 443 ~Q~~~Lf-~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~- 520 (607)
+|++.++ .-||.||+.++.. .+.++.++.+ .+++.. .++.+.+||++||||++++|+
T Consensus 81 ~q~~~~~~~Ltv~Dt~g~~~~--~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal~~d~~~ 139 (418)
T 2qag_C 81 IKEGGVQLLLTIVDTPGFGDA--VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQMPDNRV 139 (418)
T ss_dssp ------CEEEEEEECC-------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCCCCCC-C
T ss_pred EecCCcccceeeeechhhhhh--ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHhccCCCe
Confidence 7877765 6799999988753 2222222221 122321 244566789999999999999
Q ss_pred --EEEEeccC-CCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 007337 521 --ILLLDEAT-SALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 562 (607)
Q Consensus 521 --IllLDE~T-SaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l 562 (607)
++++|||| ++||+... .+.+ .+..+.++|+|.|+.+.+
T Consensus 140 ~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 140 QCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred eEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence 99999999 58998764 2333 334578999999988764
No 111
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.32 E-value=5.3e-13 Score=129.98 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=83.3
Q ss_pred EeeCCCEEEEEcCCCCcc------e-EEEccCC-C--cccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHH--HHhCCc
Q 007337 421 KLLSGSKIALVGPSGGGK------I-SIVSQEP-V--LFNCSIEENIAYGCDGKASSADIENAAKMANAHDF--ISNFPE 488 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK------i-~~V~Q~~-~--Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~--i~~lp~ 488 (607)
.|++|+.++|+||||||| + +.+...+ . .-.+.+ .+..+...+.+++....+..++... .+.+-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~- 95 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVI----WIDTENTFRPERIREIAQNRGLDPDEVLKHIY- 95 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEE----EEESSSCCCHHHHHHHHHHTTSCHHHHHHTEE-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEE----EEECCCCCCHHHHHHHHHHcCCCHHHHhhcEE-
Confidence 689999999999999999 2 1111110 0 000111 1111112345566667766665432 11110
Q ss_pred cccccccCCCCCCCh-hHHHHHHHHHHHhc-------CCCEEEEeccCCCCCHH-------HH-----HHHHHHHHHhc-
Q 007337 489 KYQTFVGERGVRLSG-GQKQRVAIARALMM-------NPRILLLDEATSALDAE-------SE-----YLVQDAMDSLM- 547 (607)
Q Consensus 489 G~~T~ige~G~~LSG-GQkQRialARAll~-------~~~IllLDE~TSaLD~~-------te-----~~i~~~l~~~~- 547 (607)
+ ....++ .|++++..+++++. +|++++|||||+.+|++ .+ ..+.+.|.++.
T Consensus 96 -----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~ 167 (231)
T 4a74_A 96 -----V---ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN 167 (231)
T ss_dssp -----E---EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----E---EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 0 112333 44555777777777 99999999999999984 22 24555665543
Q ss_pred -CCCeEEEEccC----chhhh-hcCEEEEEeCC
Q 007337 548 -KGRTVLVIAHR----LSTVQ-SADTVAVVSDG 574 (607)
Q Consensus 548 -~~~TvI~ItHr----l~~l~-~aD~Iivl~~G 574 (607)
.++|+|+|||. ...+. .||++++|++|
T Consensus 168 ~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 168 LYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 37999999994 44454 58999999875
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.31 E-value=5e-13 Score=138.51 Aligned_cols=137 Identities=22% Similarity=0.296 Sum_probs=91.8
Q ss_pred EeEEEECCCCCCCcccccceE-------EeeCCCEEEEEcCCCCcc-------eEEEccC--CCcccccHHHHhhcCCCC
Q 007337 400 DDVWFAYPSRPNHMVLKGITL-------KLLSGSKIALVGPSGGGK-------ISIVSQE--PVLFNCSIEENIAYGCDG 463 (607)
Q Consensus 400 ~~vsf~y~~~~~~~vL~~isl-------~i~~Ge~vaiVG~sGsGK-------i~~V~Q~--~~Lf~gTIreNI~~g~~~ 463 (607)
.+++++|... ..+.|+++.+ .+.+|+.++|+||||||| +++++.+ -.+ -|+.|++.+..+
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i--~t~ed~~e~~~~- 167 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI--LTIEDPIEFVHE- 167 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE--EEEESSCCSCCC-
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE--EEccCcHHhhhh-
Confidence 4678887654 4567888776 778999999999999999 3444332 111 122222222110
Q ss_pred CCCHHHHHHHHHHcCchHHHHhCCccc--cccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHH
Q 007337 464 KASSADIENAAKMANAHDFISNFPEKY--QTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQD 541 (607)
Q Consensus 464 ~~~~~~i~~al~~a~l~~~i~~lp~G~--~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~ 541 (607)
. +.++ +..++... ++-.+ +|||||.++|+++++|||| |+++...+.+
T Consensus 168 ~----------------------~~~~v~q~~~~~~~--~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~ 216 (356)
T 3jvv_A 168 S----------------------KKCLVNQREVHRDT--LGFSE----ALRSALREDPDIILVGEMR---DLETIRLALT 216 (356)
T ss_dssp C----------------------SSSEEEEEEBTTTB--SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHH
T ss_pred c----------------------cccceeeeeecccc--CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHH
Confidence 0 0011 12233332 33333 9999999999999999999 7887666555
Q ss_pred HHHHhcCCCeEEEEccCchhhhhcCEEEEEeCC
Q 007337 542 AMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDG 574 (607)
Q Consensus 542 ~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G 574 (607)
+. ..++|+++++|..+.+..+||+++|..|
T Consensus 217 ~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 217 AA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp HH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred HH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 53 3589999999999999999999988543
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.31 E-value=1e-13 Score=136.97 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCC-----HHHHHHHHHHHHHhc-CCCeEEEEccCchhh----------hhc-
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALD-----AESEYLVQDAMDSLM-KGRTVLVIAHRLSTV----------QSA- 565 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD-----~~te~~i~~~l~~~~-~~~TvI~ItHrl~~l----------~~a- 565 (607)
-++.++...+..-..+|++++|||||+.+| +...+.+.+.++.+. .++|+|++||.++.. ..|
T Consensus 120 ~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~a 199 (251)
T 2ehv_A 120 VDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIA 199 (251)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGC
T ss_pred HHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEee
Confidence 344444444444457999999999999997 556666777666543 489999999999876 567
Q ss_pred CEEEEEeC
Q 007337 566 DTVAVVSD 573 (607)
Q Consensus 566 D~Iivl~~ 573 (607)
|+|++|++
T Consensus 200 D~vi~l~~ 207 (251)
T 2ehv_A 200 RGVIVLDL 207 (251)
T ss_dssp SEEEEEEE
T ss_pred eEEEEEee
Confidence 99999963
No 114
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.31 E-value=6.2e-12 Score=122.42 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=93.5
Q ss_pred CcccccceE-EeeCCCEEEEEcCCCCcc------eE-EE-cc-CCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchH
Q 007337 412 HMVLKGITL-KLLSGSKIALVGPSGGGK------IS-IV-SQ-EPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHD 481 (607)
Q Consensus 412 ~~vL~~isl-~i~~Ge~vaiVG~sGsGK------i~-~V-~Q-~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~ 481 (607)
.+.|+++.. .+++|+.++|+||+|||| ++ .. ++ ... .+... +.+.+++.+.+...+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v----------~~~~~-~~~~~~~~~~~~~~~~~- 76 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPC----------IYVTT-EESRDSIIRQAKQFNWD- 76 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCE----------EEEES-SSCHHHHHHHHHHTTCC-
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE----------EEEEc-ccCHHHHHHHHHHhcch-
Confidence 357888887 899999999999999999 11 11 11 111 11111 22333443333322221
Q ss_pred HHHhCCccccccccCC---------CCCCChhHHHHHHHHHHHhcCCC--EEEEeccCCCC--CHHHHHHHHHHHHHhc-
Q 007337 482 FISNFPEKYQTFVGER---------GVRLSGGQKQRVAIARALMMNPR--ILLLDEATSAL--DAESEYLVQDAMDSLM- 547 (607)
Q Consensus 482 ~i~~lp~G~~T~ige~---------G~~LSGGQkQRialARAll~~~~--IllLDE~TSaL--D~~te~~i~~~l~~~~- 547 (607)
...+....-+.+.+. -...|.+|.++...+.+...+|+ ++++||||+.+ |+...+.+.+.|+++.
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~ 155 (235)
T 2w0m_A 77 -FEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLN 155 (235)
T ss_dssp -CGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHH
T ss_pred -HHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHH
Confidence 001100000001000 02348999998888877778999 99999999888 9988888888887763
Q ss_pred -CCCeEEEEccCc--------hhh-hhcCEEEEEeCC
Q 007337 548 -KGRTVLVIAHRL--------STV-QSADTVAVVSDG 574 (607)
Q Consensus 548 -~~~TvI~ItHrl--------~~l-~~aD~Iivl~~G 574 (607)
.++|+|+++|.. ..+ ..||+|++|++.
T Consensus 156 ~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 156 KWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 478999999998 334 459999999864
No 115
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.29 E-value=2.8e-16 Score=164.00 Aligned_cols=189 Identities=11% Similarity=-0.034 Sum_probs=122.7
Q ss_pred HHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC-CCCCCCcE
Q 007337 320 VIYGANLTIT-GSMTPGALTSFILYSLTVGSSVSGLSSLYTVAMKAAGASRRVFQLLDRVSSMPKSGNQCP-LGDQDGEV 397 (607)
Q Consensus 320 ~~~g~~~~~~-g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~-~~~~~~~I 397 (607)
.+.|.+.+.. +.+|.+.+.+++.+...+..| .+......+..+..+..|+..++ ++.......... .....+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3445555555 789999999988877665544 22222222222333445666665 221111100000 00112345
Q ss_pred ---------EEEeEEEE---CCCCCCCccc---------ccceEEeeCCCEEEEEcCCCCcc------------------
Q 007337 398 ---------ELDDVWFA---YPSRPNHMVL---------KGITLKLLSGSKIALVGPSGGGK------------------ 438 (607)
Q Consensus 398 ---------~~~~vsf~---y~~~~~~~vL---------~~isl~i~~Ge~vaiVG~sGsGK------------------ 438 (607)
+|+||+|+ |++. +.++| +++||+|++|+.++|+|||||||
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred CHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 89999999 8642 23455 99999999999999999999999
Q ss_pred ----------------eEEEc-cCCCc---ccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCC
Q 007337 439 ----------------ISIVS-QEPVL---FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 498 (607)
Q Consensus 439 ----------------i~~V~-Q~~~L---f~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G 498 (607)
++|++ |++.+ +..|+++||..+.. ..++..+...++.+.+++++..+|.|++|.+++-+
T Consensus 207 ~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H 285 (361)
T 2gza_A 207 TIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSITSCH 285 (361)
T ss_dssp EEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEE
T ss_pred EECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEEC
Confidence 88999 99887 89999999998754 23333344445556677899999999999999988
Q ss_pred CCCChhHHHHHHHHHH
Q 007337 499 VRLSGGQKQRVAIARA 514 (607)
Q Consensus 499 ~~LSGGQkQRialARA 514 (607)
.+-+.+..+|+.....
T Consensus 286 ~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 286 AGSCELTFERLALMVL 301 (361)
T ss_dssp CSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 8889999999987763
No 116
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.29 E-value=8.9e-13 Score=149.98 Aligned_cols=152 Identities=15% Similarity=0.163 Sum_probs=93.3
Q ss_pred CcEEEEeEEEECCCC----CCCcccccceEEeeCCCEEEEEcCCCCcc---------e-------EEEccCCCcccccHH
Q 007337 395 GEVELDDVWFAYPSR----PNHMVLKGITLKLLSGSKIALVGPSGGGK---------I-------SIVSQEPVLFNCSIE 454 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~----~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------i-------~~V~Q~~~Lf~gTIr 454 (607)
+.|++++.. +|-- .+..+++|+||+ ++|+.++|+||||||| + .+||++.. .-++.
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~--~i~~~ 650 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKV--EIGPI 650 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEE--EECCC
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcc--cceeH
Confidence 357887753 3321 135789999999 9999999999999999 1 13333210 00000
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHH
Q 007337 455 ENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAE 534 (607)
Q Consensus 455 eNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~ 534 (607)
++| | ...+..+.+ ..+-..+|+++++ ++.+.....+|+++||||||+++|+.
T Consensus 651 ~~i-~---------------~~~~~~d~l-----------~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 651 DRI-F---------------TRVGAADDL-----------ASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp CEE-E---------------EEEC----------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHH-H---------------hhCCHHHHH-----------HhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 000 0 000111111 1112346777765 44444568999999999999888886
Q ss_pred HHHH-HHHHHHHhc--CCCeEEEEccCchhhhhcCEEEEEeCCEEeEe
Q 007337 535 SEYL-VQDAMDSLM--KGRTVLVIAHRLSTVQSADTVAVVSDGEIVES 579 (607)
Q Consensus 535 te~~-i~~~l~~~~--~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~ 579 (607)
.... ..+.++.+. .++|+|++||..+....||++..+++|++...
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 4333 345555543 37999999999998888998877777776543
No 117
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.27 E-value=9.5e-12 Score=125.19 Aligned_cols=66 Identities=12% Similarity=0.202 Sum_probs=50.8
Q ss_pred ccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCC--CCCHHHH---HHHHHHHHHhc--CCCeEEEEccCchhh
Q 007337 494 VGERGVRLSGGQKQRVAIARALMMNPRILLLDEATS--ALDAESE---YLVQDAMDSLM--KGRTVLVIAHRLSTV 562 (607)
Q Consensus 494 ige~G~~LSGGQkQRialARAll~~~~IllLDE~TS--aLD~~te---~~i~~~l~~~~--~~~TvI~ItHrl~~l 562 (607)
.+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..+.+.|.++. .++|+|+|+|.....
T Consensus 112 ~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 112 IGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp TTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred CCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 3455678999998865 78899999999999999 9998544 67777777664 389999999987654
No 118
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.26 E-value=9.5e-12 Score=120.14 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=90.8
Q ss_pred cccccceE-EeeCCCEEEEEcCCCCcc------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCch--HHH
Q 007337 413 MVLKGITL-KLLSGSKIALVGPSGGGK------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAH--DFI 483 (607)
Q Consensus 413 ~vL~~isl-~i~~Ge~vaiVG~sGsGK------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~--~~i 483 (607)
+.|+++.. .+++|+.++|+|++|||| ++.-+..+.+| +..+...+.+++.+.++..++. +..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~---------i~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAY---------VDTEGGFSPERLVQMAETRGLNPEEAL 77 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEE---------EESSCCCCHHHHHHHHHTTTCCHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEE---------EECCCCCCHHHHHHHHHhcCCChHHHh
Confidence 45676655 689999999999999999 22211111111 1111123455565555544432 111
Q ss_pred HhCCccccccccCCCCCCChh--HHHHHHHHHHHhcC-CCEEEEeccCCCCCHHHH--------HHHHHHHHHhcC--CC
Q 007337 484 SNFPEKYQTFVGERGVRLSGG--QKQRVAIARALMMN-PRILLLDEATSALDAESE--------YLVQDAMDSLMK--GR 550 (607)
Q Consensus 484 ~~lp~G~~T~ige~G~~LSGG--QkQRialARAll~~-~~IllLDE~TSaLD~~te--------~~i~~~l~~~~~--~~ 550 (607)
+.+ .+. .+|++ |+|+++.+|+++++ |+++|+||||+.+|+..+ ..+.+.|+++.+ ++
T Consensus 78 ~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~ 147 (220)
T 2cvh_A 78 SRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNI 147 (220)
T ss_dssp HHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred hcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 111 111 23444 47899999999986 999999999999998532 334444655543 78
Q ss_pred eEEEEccCch-------------hh-hhcCEEEEEeCC
Q 007337 551 TVLVIAHRLS-------------TV-QSADTVAVVSDG 574 (607)
Q Consensus 551 TvI~ItHrl~-------------~l-~~aD~Iivl~~G 574 (607)
|+|+++|... .+ ..||.|++|++.
T Consensus 148 ~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 148 PVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred EEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999999865 23 469999999764
No 119
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.23 E-value=3.3e-13 Score=129.49 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=48.2
Q ss_pred ccCCCCCCChhHHHH-HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC
Q 007337 494 VGERGVRLSGGQKQR-VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK 548 (607)
Q Consensus 494 ige~G~~LSGGQkQR-ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~ 548 (607)
++.+-..+|+||||| +..||+++++|+++++||||||+|..+...+.+.|.+..+
T Consensus 143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 355666799999999 8999999999999999999999999999999998877643
No 120
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.19 E-value=1.1e-14 Score=140.21 Aligned_cols=102 Identities=15% Similarity=0.148 Sum_probs=78.0
Q ss_pred eeCCCEEEEEcCCCCcc-----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHH
Q 007337 422 LLSGSKIALVGPSGGGK-----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFIS 484 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK-----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~ 484 (607)
.++|++++|+||||||| +++|+||.+.++.+.++|+........ ..+.+...+.+++.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~ 93 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGA-----PETFDFEGFQRLCH 93 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTS-----GGGBCHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCC-----CchhhHHHHHHHHH
Confidence 57899999999999999 589999999999999988742210011 01111222334455
Q ss_pred hCCcc--ccccccCCCCCCChhHHHHHHHH-HHHhcCCCEEEEeccC
Q 007337 485 NFPEK--YQTFVGERGVRLSGGQKQRVAIA-RALMMNPRILLLDEAT 528 (607)
Q Consensus 485 ~lp~G--~~T~ige~G~~LSGGQkQRialA-RAll~~~~IllLDE~T 528 (607)
.|+.| +++++.++|..+|+||+||+++| |+++.+++++++|||.
T Consensus 94 ~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 94 ALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 55555 77889999999999999999998 9999999998899985
No 121
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.13 E-value=1.1e-12 Score=133.42 Aligned_cols=131 Identities=15% Similarity=0.143 Sum_probs=66.4
Q ss_pred EeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEEccCC
Q 007337 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIVSQEP 446 (607)
Q Consensus 400 ~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V~Q~~ 446 (607)
+|++++|.. ..++++++|+| +|+|+||+|| +++++|++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC--
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC
Confidence 477888863 46999999998 9999999999 23444543
Q ss_pred Cc-ccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEe
Q 007337 447 VL-FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLD 525 (607)
Q Consensus 447 ~L-f~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLD 525 (607)
.+ ..-||.||..++.. ....+++....+. +.+. ++ ..-.++|||||||+++|||+. ++++|
T Consensus 73 ~~~~~ltv~Dt~g~~~~-~~~~e~~~~l~~~--l~~~-------~~----~~~~~~sgg~rqrv~~ara~~----ll~ld 134 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDA-INCRDCFKTIISY--IDEQ-------FE----RYLHDESGLNRRHIIDNRVHC----CFYFI 134 (301)
T ss_dssp -CCEEEEEEEEC------------CTTHHHH--HHHH-------HH----HHHHHHTSSCCTTCCCCCCCE----EEEEE
T ss_pred CcccCcchhhhhhhhhh-cCcHHHHHHHHHH--HHHH-------HH----HHHHHhCHHhhhhhhhhhhhh----eeeee
Confidence 33 24466666666532 1111111111111 1111 11 112458999999999999985 99999
Q ss_pred ccCCC-CCHHHHHHHHHHHHHhcC--CCeEEEEccCchh
Q 007337 526 EATSA-LDAESEYLVQDAMDSLMK--GRTVLVIAHRLST 561 (607)
Q Consensus 526 E~TSa-LD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~ 561 (607)
|||++ ||+... +.++++.+ +.++|+.+|++.+
T Consensus 135 ePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 135 SPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred cCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99986 999874 33333322 5677888898753
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.10 E-value=1.8e-11 Score=128.77 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=98.8
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCE--EEEEcCCCCcc----------------------------eEEEccC
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSK--IALVGPSGGGK----------------------------ISIVSQE 445 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~--vaiVG~sGsGK----------------------------i~~V~Q~ 445 (607)
.+++++ +++|++ .+ |+++||++++|+. +||||+||||| ++|++|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec
Confidence 466677 788863 34 9999999999999 99999999999 7999999
Q ss_pred CCcc-cccHHHHhhcCCCCCCCHHHHHH----HHHHcCchHHHHh-------CCcccccc-------ccCCCCCCChhHH
Q 007337 446 PVLF-NCSIEENIAYGCDGKASSADIEN----AAKMANAHDFISN-------FPEKYQTF-------VGERGVRLSGGQK 506 (607)
Q Consensus 446 ~~Lf-~gTIreNI~~g~~~~~~~~~i~~----al~~a~l~~~i~~-------lp~G~~T~-------ige~G~~LSGGQk 506 (607)
+.++ +-|+.||+.+|.. .+.+.-++ .++. .+.+.+.. ++..-|+. |-+.+..|+-.+
T Consensus 91 ~~l~~~ltv~D~~~~g~~--~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D- 166 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQ--INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD- 166 (427)
T ss_dssp --CEEEEEEEEEECCCC---CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-
T ss_pred Cccccccchhhhhhhhhc--cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-
Confidence 9887 6799999999853 44321111 1111 11122222 12223333 234455677666
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHH-hc-CCCeEEEEcc
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS-LM-KGRTVLVIAH 557 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~-~~-~~~TvI~ItH 557 (607)
+.++|+|..+++|+++|++|..|.+.--..+.+.|++ +. .+.+++.++.
T Consensus 167 --ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 167 --LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred --HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 8999999999999999999999988866667777765 32 4667888775
No 123
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.09 E-value=1.5e-12 Score=144.91 Aligned_cols=154 Identities=18% Similarity=0.342 Sum_probs=95.3
Q ss_pred cEEEEeEEEECCCCCCCcccccc----------eEEeeCCCEEEEEcCCCCcc---------------------------
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGI----------TLKLLSGSKIALVGPSGGGK--------------------------- 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~i----------sl~i~~Ge~vaiVG~sGsGK--------------------------- 438 (607)
.++++|+++.|+.. ..++|+.+ +++++. +||||+|||||
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999643 23455544 366665 99999999999
Q ss_pred -------------eEEEccCCCcc-cccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChh
Q 007337 439 -------------ISIVSQEPVLF-NCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGG 504 (607)
Q Consensus 439 -------------i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGG 504 (607)
++|++|++.++ ..|++|||.+.. .. +.. .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~-------------~~------~~~-----------~~~~~s-- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ-------------NA------IAG-----------EGMGIS-- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH-------------HH------HHC-----------SSSCCC--
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH-------------HH------hcC-----------Cccccc--
Confidence 56777777665 457777775431 00 000 011111
Q ss_pred HHHHHHHHHHHhcCCCEEEEecc------CCCCCHHHHHHHHHHHHHhcC---CCeEEEEccCchhh--------hh---
Q 007337 505 QKQRVAIARALMMNPRILLLDEA------TSALDAESEYLVQDAMDSLMK---GRTVLVIAHRLSTV--------QS--- 564 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~------TSaLD~~te~~i~~~l~~~~~---~~TvI~ItHrl~~l--------~~--- 564 (607)
++++.++++...+|+++++||| |++||+.+++.+.+.++++.+ +.++++++|.++.. +.
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 2444555555668999999999 999999999999999988643 45788889997632 22
Q ss_pred --cCEEEEEeCCEEeEecChhHHh
Q 007337 565 --ADTVAVVSDGEIVESGTHEELL 586 (607)
Q Consensus 565 --aD~Iivl~~G~Ive~G~~~eL~ 586 (607)
...|+|+.++.+++.|+.+++.
T Consensus 213 ~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 213 EGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCCSEEEEEECGGGSSSSSTTCCC
T ss_pred cCCceEEEecchhhcCcccHHHHH
Confidence 3579999999999999876543
No 124
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.99 E-value=6.7e-11 Score=119.98 Aligned_cols=55 Identities=24% Similarity=0.257 Sum_probs=38.1
Q ss_pred CChhHHHHHHHHHHHhcCCC--EEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEccCchhh
Q 007337 501 LSGGQKQRVAIARALMMNPR--ILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAHRLSTV 562 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~--IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~l 562 (607)
++..++||.+||||+..+|+ +++|| |++..| +.+.++++. .+.|+|+|||...+.
T Consensus 203 ~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~~~~~~~~~~~~~t~iivTh~d~~a 261 (304)
T 1rj9_A 203 MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GLEQAKKFHEAVGLTGVIVTKLDGTA 261 (304)
T ss_dssp HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HHHHHHHHHHHHCCSEEEEECTTSSC
T ss_pred HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HHHHHHHHHHHcCCcEEEEECCcccc
Confidence 46778999999999999999 55566 444443 333333221 278999999986543
No 125
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.91 E-value=1.3e-10 Score=112.22 Aligned_cols=60 Identities=12% Similarity=0.268 Sum_probs=49.0
Q ss_pred HHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEeCCEEeEecChhHHhh
Q 007337 512 ARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVSDGEIVESGTHEELLS 587 (607)
Q Consensus 512 ARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~~G~Ive~G~~~eL~~ 587 (607)
++.++..++++||| ||+++.+.+.+.+. +++|+++++|+++.+.. |+ ++.| .++.+++.+
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 46677889999999 99999999998775 57899999999998876 33 6667 577777754
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.80 E-value=4.4e-09 Score=102.84 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=75.0
Q ss_pred EeeCCCEEEEEcCCCCcc------eEEEccCCCcccccHHHHhhcC-CCCCCCHHHHHHHHHHcCchH--HHHhCCcccc
Q 007337 421 KLLSGSKIALVGPSGGGK------ISIVSQEPVLFNCSIEENIAYG-CDGKASSADIENAAKMANAHD--FISNFPEKYQ 491 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK------i~~V~Q~~~Lf~gTIreNI~~g-~~~~~~~~~i~~al~~a~l~~--~i~~lp~G~~ 491 (607)
-+++|+.++|+||+|||| ++.-.+.+.-+ |....+..+. .+...+.+++.+.++..+... ..+.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~-g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----- 93 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDR-GGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNV----- 93 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGG-TCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTE-----
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhc-CCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCe-----
Confidence 489999999999999999 22200000000 0000111111 111234556666666555431 11111
Q ss_pred ccccCCCCCCChhHH-HHHHHHHHHh--cCCCEEEEeccCCCCCHH-------HHH-----HHHHHHHHhc--CCCeEEE
Q 007337 492 TFVGERGVRLSGGQK-QRVAIARALM--MNPRILLLDEATSALDAE-------SEY-----LVQDAMDSLM--KGRTVLV 554 (607)
Q Consensus 492 T~ige~G~~LSGGQk-QRialARAll--~~~~IllLDE~TSaLD~~-------te~-----~i~~~l~~~~--~~~TvI~ 554 (607)
.+. ...++.+. +.+.-+++++ .+|+++++||||+.+|+. +++ .+.+.|.++. .++|+|+
T Consensus 94 -~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~ 169 (243)
T 1n0w_A 94 -AYA---RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVI 169 (243)
T ss_dssp -EEE---ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred -EEE---ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 010 12455543 3344444554 479999999999999986 432 3333444432 2799999
Q ss_pred EccCchhhh--------------------hcCEEEEEeCC
Q 007337 555 IAHRLSTVQ--------------------SADTVAVVSDG 574 (607)
Q Consensus 555 ItHrl~~l~--------------------~aD~Iivl~~G 574 (607)
++|-..... .||.|++|+.|
T Consensus 170 ~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 170 TNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp EC-------------------------CCTTCEEEEEEEC
T ss_pred EeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 999654322 68999999875
No 127
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.80 E-value=1.2e-10 Score=109.93 Aligned_cols=54 Identities=13% Similarity=-0.088 Sum_probs=37.4
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 007337 497 RGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR 558 (607)
Q Consensus 497 ~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHr 558 (607)
....+|+||+||+++||++.++|+++ +|++..+.+.+.+..+....++++.||.
T Consensus 106 ~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 106 PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSG 159 (191)
T ss_dssp CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTT
T ss_pred CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCC
Confidence 34579999999999999999999876 5777666666665443221233444543
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.56 E-value=1.2e-09 Score=111.78 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=42.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~ 560 (607)
++||||+||...+|+++.+|+++ ||| +.+.+.|+++.++.|++++||...
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 58999999999999999999887 888 667777777777899999999753
No 129
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.56 E-value=9.9e-12 Score=117.30 Aligned_cols=78 Identities=10% Similarity=0.097 Sum_probs=56.0
Q ss_pred ChhHHHHHHHHH------HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEccC-chhhh-hcCEEEEEe
Q 007337 502 SGGQKQRVAIAR------ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIAHR-LSTVQ-SADTVAVVS 572 (607)
Q Consensus 502 SGGQkQRialAR------All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~ItHr-l~~l~-~aD~Iivl~ 572 (607)
|+|++|++.++. +++++++...+|+ .+|+...+. .+.+..+. .+.|+|..+|. ++.+. .||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 888888888888 8888888888884 789986666 67776653 35799999999 88775 499998 9
Q ss_pred CCEEeEecChhHH
Q 007337 573 DGEIVESGTHEEL 585 (607)
Q Consensus 573 ~G~Ive~G~~~eL 585 (607)
+|+++..|+.+-|
T Consensus 170 ~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 170 NPRFIFCMAGDPL 182 (189)
T ss_dssp CGGGSCC------
T ss_pred CCcEEEeecCCch
Confidence 9999999987665
No 130
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.53 E-value=1.3e-07 Score=88.13 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=38.8
Q ss_pred hcCCCEEEEeccCC-CCCHHHHHHHHHHHHHhc-CCCeEEEEccCch
Q 007337 516 MMNPRILLLDEATS-ALDAESEYLVQDAMDSLM-KGRTVLVIAHRLS 560 (607)
Q Consensus 516 l~~~~IllLDE~TS-aLD~~te~~i~~~l~~~~-~~~TvI~ItHrl~ 560 (607)
+.+|++|+||||++ .+|+.....+.+.+.... +++|+|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 56999999999996 899999888888887654 6899999999874
No 131
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.53 E-value=8.5e-08 Score=100.62 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=82.3
Q ss_pred EeeCCCEEEEEcCCCCcc------eEEEccCCCcccccHHHHhhc-CCCCCCCHHHHHHHHHHcCchHH--HHhCCcccc
Q 007337 421 KLLSGSKIALVGPSGGGK------ISIVSQEPVLFNCSIEENIAY-GCDGKASSADIENAAKMANAHDF--ISNFPEKYQ 491 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK------i~~V~Q~~~Lf~gTIreNI~~-g~~~~~~~~~i~~al~~a~l~~~--i~~lp~G~~ 491 (607)
-|++|+.++|+||||||| +++--+.|.-.-|. .....| ......+.+++.+.++..++... ++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~-~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni----- 247 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG-EGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNV----- 247 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC-SSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTE-----
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCC-CCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcE-----
Confidence 589999999999999999 22222222100000 000111 11112456677777777776421 1111
Q ss_pred ccccCCCCCCCh-hHHHHHHHHHHHh--cCCCEEEEeccCCCCCHHHH------------HHHHHHHHHhc--CCCeEEE
Q 007337 492 TFVGERGVRLSG-GQKQRVAIARALM--MNPRILLLDEATSALDAESE------------YLVQDAMDSLM--KGRTVLV 554 (607)
Q Consensus 492 T~ige~G~~LSG-GQkQRialARAll--~~~~IllLDE~TSaLD~~te------------~~i~~~l~~~~--~~~TvI~ 554 (607)
.+.. ..++ .|.+.+.-+++++ .+|+++++||||+.+|++.. ..+.+.|+++. .++|+|+
T Consensus 248 -~~~~---~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl 323 (400)
T 3lda_A 248 -AYAR---AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV 323 (400)
T ss_dssp -EEEE---CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred -EEec---cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1111 1122 3455565555554 46999999999999997633 45556666553 3799999
Q ss_pred EccCch-------------------h-hhhcCEEEEEeCCE
Q 007337 555 IAHRLS-------------------T-VQSADTVAVVSDGE 575 (607)
Q Consensus 555 ItHrl~-------------------~-l~~aD~Iivl~~G~ 575 (607)
|+|-.. . -..+|.++.|++++
T Consensus 324 v~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 324 TNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp EEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred EEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 999832 1 23489999998763
No 132
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.52 E-value=1.5e-07 Score=84.90 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=32.6
Q ss_pred HHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCe-EEEEccC
Q 007337 514 ALMMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRT-VLVIAHR 558 (607)
Q Consensus 514 All~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~T-vI~ItHr 558 (607)
+++.+|++|+||||++ +|...+..+.+.+.++. +++| +|++||+
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4567899999999998 66555777878777654 3577 6766664
No 133
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=1e-07 Score=98.75 Aligned_cols=46 Identities=17% Similarity=0.365 Sum_probs=39.6
Q ss_pred HhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 007337 515 LMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 561 (607)
Q Consensus 515 ll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~ 561 (607)
+..+|+++|+|||++ ||+.+...+.+.+++..+++++|++||+++.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 678999999999999 9999999999999987778899999999864
No 134
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.42 E-value=3.8e-09 Score=108.88 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=38.7
Q ss_pred CCCChhHHHHHHHHHHHhc------CCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 007337 499 VRLSGGQKQRVAIARALMM------NPRILLLDEATSALDAESEYLVQDAMDSLM 547 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~------~~~IllLDE~TSaLD~~te~~i~~~l~~~~ 547 (607)
..+|+|++|+++.|++++. +|+++. |||+|.++-..+.+.|.+..
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 3479999999999999987 688876 99999998888888887753
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.41 E-value=2.2e-08 Score=105.63 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=78.0
Q ss_pred cccceEEeeCCCEEEEEcCCCCcc-------------------------eEEEccCCCcccccHHHHhhcCCC----CCC
Q 007337 415 LKGITLKLLSGSKIALVGPSGGGK-------------------------ISIVSQEPVLFNCSIEENIAYGCD----GKA 465 (607)
Q Consensus 415 L~~isl~i~~Ge~vaiVG~sGsGK-------------------------i~~V~Q~~~Lf~gTIreNI~~g~~----~~~ 465 (607)
-++++|+++.|+.|+|||++|||| +++|.|+. -..-++.|+..+... ...
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhh
Confidence 478999999999999999999999 56676654 112233333322100 011
Q ss_pred CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 007337 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS 545 (607)
Q Consensus 466 ~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~ 545 (607)
.. .+.+.++.|.. .+..+ +.. .+.-.+||+||+||.++||++..+|.|+++ +.+|...+ ...+.+.+
T Consensus 226 ~~-~fl~~~era~~--lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~ 292 (416)
T 1udx_A 226 GL-EFLRHIARTRV--LLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALAD 292 (416)
T ss_dssp CH-HHHHHHTSSSE--EEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHH
T ss_pred hH-HHHHHHHHHHh--hhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHH
Confidence 11 12222222211 11111 000 112246999999999999999999999999 89998755 33334433
Q ss_pred hc--CCCeEEEEccC
Q 007337 546 LM--KGRTVLVIAHR 558 (607)
Q Consensus 546 ~~--~~~TvI~ItHr 558 (607)
.. .+.+++.||..
T Consensus 293 ~l~~~g~~vi~iSA~ 307 (416)
T 1udx_A 293 ALAREGLAVLPVSAL 307 (416)
T ss_dssp HHHTTTSCEEECCTT
T ss_pred HHHhcCCeEEEEECC
Confidence 32 35688877643
No 136
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.40 E-value=2.1e-08 Score=98.53 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=46.0
Q ss_pred CCCCChhHHHHHHHHHHH-hcCCCEEEEe----ccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 007337 498 GVRLSGGQKQRVAIARAL-MMNPRILLLD----EATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 498 G~~LSGGQkQRialARAl-l~~~~IllLD----E~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~ 572 (607)
...||| |+ ||+ +.+|++++|| |||+++|..++..+.+.+.++.+. + ..-+...+..+++++++
T Consensus 150 ~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~-~----~~v~~~~~~~~~~~~id 217 (246)
T 2bbw_A 150 IHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDV-A----KPVIELYKSRGVLHQFS 217 (246)
T ss_dssp EETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH-H----HHHHHHHHHTTCEEEEE
T ss_pred CcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHh-H----HHHHHHHhhcCcEEEEC
Confidence 346888 66 888 9999999999 999999999999999888775332 1 00012233456677776
Q ss_pred C
Q 007337 573 D 573 (607)
Q Consensus 573 ~ 573 (607)
.
T Consensus 218 ~ 218 (246)
T 2bbw_A 218 G 218 (246)
T ss_dssp C
T ss_pred C
Confidence 5
No 137
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.36 E-value=6.4e-10 Score=120.61 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=89.6
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc---------------------------------eEEEccCCCccc--ccHHHHh
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK---------------------------------ISIVSQEPVLFN--CSIEENI 457 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK---------------------------------i~~V~Q~~~Lf~--gTIreNI 457 (607)
.+++++++.+++|+.++|+||||||| ++++.|+.. .. -|+++++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~-~~~~~~~~~~l 326 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM-GEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS-SSCCBCHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc-ccCCcCHHHHH
Confidence 46889999999999999999999999 223333332 22 3677776
Q ss_pred hcC---CC-----CCCCHHHHHHHHHHcCc-------------hHH---HHhCCcccccccc-------CCCCCCChhHH
Q 007337 458 AYG---CD-----GKASSADIENAAKMANA-------------HDF---ISNFPEKYQTFVG-------ERGVRLSGGQK 506 (607)
Q Consensus 458 ~~g---~~-----~~~~~~~i~~al~~a~l-------------~~~---i~~lp~G~~T~ig-------e~G~~LSGGQk 506 (607)
... +| .+..+.+...++++++- .+. +...|.|....+. .....+|||||
T Consensus 327 ~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 327 RAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp HTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 422 11 13444556666665431 122 2233344433322 23346799999
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEE--EccCchhhhh-cC
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLV--IAHRLSTVQS-AD 566 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~--ItHrl~~l~~-aD 566 (607)
||.++|. + | |++||+++.+.+.+.|.++.+ ++|+++ +||.++.+.. |+
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9987751 1 6 999999877777666665543 678875 8999998753 43
No 138
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.35 E-value=3.7e-08 Score=104.85 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.8
Q ss_pred ccceEEeeCCCEEEEEcCCCCcc
Q 007337 416 KGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 416 ~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+++||++++|++++|||+|||||
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGK 306 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGK 306 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSH
T ss_pred CCceeeccCCeEEEEECCCcccH
Confidence 57899999999999999999999
No 139
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.31 E-value=7.8e-07 Score=89.72 Aligned_cols=124 Identities=16% Similarity=0.102 Sum_probs=79.9
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------eEEEccCCCcccccHHHHhhc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------ISIVSQEPVLFNCSIEENIAY 459 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i~~V~Q~~~Lf~gTIreNI~~ 459 (607)
+.++++++.|+.. . ++++|+ +|+.++++|++|||| +.++..|+.- +++
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~-~~~------- 141 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR-PAA------- 141 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC-HHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc-HhH-------
Confidence 5566777778532 1 678888 999999999999999 5566555431 000
Q ss_pred CCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEecc-CCCCCHHHHHH
Q 007337 460 GCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEA-TSALDAESEYL 538 (607)
Q Consensus 460 g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~-TSaLD~~te~~ 538 (607)
.+++....+..++. -+|. +..-...+-||.+|+++..+++|++|+||| ++++|+..-..
T Consensus 142 -------~~ql~~~~~~~~l~----~~~~---------~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~ 201 (295)
T 1ls1_A 142 -------REQLRLLGEKVGVP----VLEV---------MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE 201 (295)
T ss_dssp -------HHHHHHHHHHHTCC----EEEC---------CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH
T ss_pred -------HHHHHHhcccCCeE----EEEc---------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH
Confidence 11122222222211 1111 112344566899999998899999999999 99999987777
Q ss_pred HHHHHHHhcCCCeEEEE
Q 007337 539 VQDAMDSLMKGRTVLVI 555 (607)
Q Consensus 539 i~~~l~~~~~~~TvI~I 555 (607)
+.+.......+.+++++
T Consensus 202 l~~~~~~~~~~~~~lv~ 218 (295)
T 1ls1_A 202 LARLKEVLGPDEVLLVL 218 (295)
T ss_dssp HHHHHHHHCCSEEEEEE
T ss_pred HHHHhhhcCCCEEEEEE
Confidence 77766665555555444
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.30 E-value=2.4e-09 Score=113.14 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=21.6
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCEEE
Q 007337 498 GVRLSGGQKQRVAIARALMMNPRILL 523 (607)
Q Consensus 498 G~~LSGGQkQRialARAll~~~~Ill 523 (607)
..+|||||+|| ||||++.+|++..
T Consensus 291 ~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 291 SSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHHHHHHHHH--hhhhhcCCCCccC
Confidence 35799999999 9999999999876
No 141
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.20 E-value=5.2e-08 Score=100.34 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=60.8
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcc----------------------------------eEEEccCCCcccc-cHHHHhh
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGK----------------------------------ISIVSQEPVLFNC-SIEENIA 458 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGK----------------------------------i~~V~Q~~~Lf~g-TIreNI~ 458 (607)
-++++++. .+|++++|+|+||||| +++++|++++++. |++++-.
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 46777774 5899999999999999 4688899888754 8888633
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHH
Q 007337 459 YGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARAL 515 (607)
Q Consensus 459 ~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAl 515 (607)
. ..+.+++.+. +.++++.+ |+.-.....-.+|| ||+||++||+++
T Consensus 284 ~----~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 284 W----HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp C----CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred c----CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 2 3444444321 22333332 33333344557899 999999999986
No 142
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.19 E-value=2.1e-06 Score=86.54 Aligned_cols=120 Identities=15% Similarity=0.249 Sum_probs=75.4
Q ss_pred eCCCEEEEEcCCCCcc------------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHH
Q 007337 423 LSGSKIALVGPSGGGK------------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFIS 484 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK------------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~ 484 (607)
++|+.++++|++|||| +.++.+|++ ..+..|++. ...+..++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~--r~~a~eqL~-------------~~~~~~gl----- 162 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY--RIAAVEQLK-------------TYAELLQA----- 162 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS--STTHHHHHH-------------HHHTTTTC-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc--cchHHHHHH-------------HHHHhcCC-----
Confidence 4799999999999999 788888883 333333332 22222221
Q ss_pred hCCccccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc---CCCeEEEE--ccCc
Q 007337 485 NFPEKYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM---KGRTVLVI--AHRL 559 (607)
Q Consensus 485 ~lp~G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~---~~~TvI~I--tHrl 559 (607)
| -... .+ ++..+.+|+++ ++++++|+| |+++|+..+..+.+...-+. .+.+++++ +|..
T Consensus 163 --~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~ 226 (296)
T 2px0_A 163 --P----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY 226 (296)
T ss_dssp --C----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH
T ss_pred --C----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH
Confidence 1 1111 12 34567778764 999999999 99999876665554332221 23345666 8987
Q ss_pred hhhhh-cCEEEEEeCCEEeE
Q 007337 560 STVQS-ADTVAVVSDGEIVE 578 (607)
Q Consensus 560 ~~l~~-aD~Iivl~~G~Ive 578 (607)
+.+.. +|++-.++.+.|+-
T Consensus 227 ~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 227 EDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 76654 67665566676664
No 143
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.18 E-value=2.9e-06 Score=85.73 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=54.9
Q ss_pred ceEEeeCCCEEEEEcCCCCcc-----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCch
Q 007337 418 ITLKLLSGSKIALVGPSGGGK-----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAH 480 (607)
Q Consensus 418 isl~i~~Ge~vaiVG~sGsGK-----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~ 480 (607)
++++.++|+.++|+|++|||| +.++..|++ .... .+++...++..++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~--r~~a-------------~eqL~~~~~~~gl- 160 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF--RAAA-------------IEQLKIWGERVGA- 160 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT--CHHH-------------HHHHHHHHHHHTC-
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc--cHHH-------------HHHHHHHHHHcCC-
Confidence 345567899999999999999 555555542 1111 1223333333222
Q ss_pred HHHHhCCccccccccCCCCCCChhHHHHH---HHHHHHhcCCCEEEEeccCC
Q 007337 481 DFISNFPEKYQTFVGERGVRLSGGQKQRV---AIARALMMNPRILLLDEATS 529 (607)
Q Consensus 481 ~~i~~lp~G~~T~ige~G~~LSGGQkQRi---alARAll~~~~IllLDE~TS 529 (607)
| . + ...|||+.|++ +|+||+.++|+++|+|+|..
T Consensus 161 ------~----~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 161 ------T----V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ------E----E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ------c----E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1 1 1 13579999999 99999999999999999984
No 144
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.16 E-value=1.1e-05 Score=78.54 Aligned_cols=70 Identities=10% Similarity=0.195 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHh--cCCCEEEEeccCCCC--CHHHHHHHHHHHHHhc--CCCeEEEEccCchh---------hhhcCEE
Q 007337 504 GQKQRVAIARALM--MNPRILLLDEATSAL--DAESEYLVQDAMDSLM--KGRTVLVIAHRLST---------VQSADTV 568 (607)
Q Consensus 504 GQkQRialARAll--~~~~IllLDE~TSaL--D~~te~~i~~~l~~~~--~~~TvI~ItHrl~~---------l~~aD~I 568 (607)
...+.+..++.++ .+|+++++|++++-+ |+...+.+...+.+.. .++|+|+++|.... ...||.|
T Consensus 112 ~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~v 191 (247)
T 2dr3_A 112 DIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGI 191 (247)
T ss_dssp SHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEE
Confidence 3445455555555 479999999999887 5533344444444432 47899999998764 3568999
Q ss_pred EEEeC
Q 007337 569 AVVSD 573 (607)
Q Consensus 569 ivl~~ 573 (607)
+.|+.
T Consensus 192 i~L~~ 196 (247)
T 2dr3_A 192 IRLDL 196 (247)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99964
No 145
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.16 E-value=5.8e-07 Score=88.96 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEEEe
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iivl~ 572 (607)
|++|||||..+|++++||||| |+++...+.+ ....++|+++++|..+....||++++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 9987554443 3346899999999999888888876664
No 146
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.08 E-value=2.4e-06 Score=87.20 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh----------hhcCEEEEEeCCEE
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV----------QSADTVAVVSDGEI 576 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l----------~~aD~Iivl~~G~I 576 (607)
+.-.++|++..++++++||.+|. .|.... .+.+.+. .+.|.|++||--.+. ...-.|..+..|+-
T Consensus 232 eL~~i~ral~~de~llvLDa~t~-~~~~~~---~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 232 EMKKIARVTKPNLVIFVGDALAG-NAIVEQ---ARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHHHHHHCCSEEEEEEEGGGT-THHHHH---HHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHhcCCCCEEEEecHHH-HHHHHH---HHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 34458999999999999996665 333321 1222222 378999999954321 12346777877764
Q ss_pred e
Q 007337 577 V 577 (607)
Q Consensus 577 v 577 (607)
+
T Consensus 307 v 307 (328)
T 3e70_C 307 Y 307 (328)
T ss_dssp T
T ss_pred c
Confidence 4
No 147
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.07 E-value=2e-05 Score=84.54 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=89.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc------------------eEEEccCCCcccccHHHHhh---cCCC------CCC
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK------------------ISIVSQEPVLFNCSIEENIA---YGCD------GKA 465 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK------------------i~~V~Q~~~Lf~gTIreNI~---~g~~------~~~ 465 (607)
+.|+++..-+++|+.+.|.|++|+|| +.|++-+-. ...+++.+. ++-+ ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~l~~g~l 268 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS--AQQLVMRMLCAEGNINAQNLRTGKL 268 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC--HHHHHHHHHHHHHTCCHHHHHTSCC
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHHHHcCCCHHHHhcCCC
Confidence 46788887899999999999999999 233332211 011222211 1100 023
Q ss_pred CHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHHHHHh--cCCCEEEEeccCCCCCHH--------H
Q 007337 466 SSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALDAE--------S 535 (607)
Q Consensus 466 ~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialARAll--~~~~IllLDE~TSaLD~~--------t 535 (607)
+++++.++.+++ +.+...| -.+-+ ...+|++|.+ +.||++. .+|+++|+|+++.-.++. .
T Consensus 269 ~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~ 338 (454)
T 2r6a_A 269 TPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQE 338 (454)
T ss_dssp CHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHH
T ss_pred CHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHH
Confidence 444433332221 1222222 11212 2468999876 6778776 579999999999987431 1
Q ss_pred HHHHHHHHHHhc--CCCeEEEEcc-----------Cch---------hhhhcCEEEEEeCCEE
Q 007337 536 EYLVQDAMDSLM--KGRTVLVIAH-----------RLS---------TVQSADTVAVVSDGEI 576 (607)
Q Consensus 536 e~~i~~~l~~~~--~~~TvI~ItH-----------rl~---------~l~~aD~Iivl~~G~I 576 (607)
-..+.+.|+.+. .++|+|+++| |+. .-..||.|++|..++.
T Consensus 339 i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 339 VSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 144555555443 2789999999 132 2346999999987654
No 148
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.07 E-value=1.5e-05 Score=82.27 Aligned_cols=76 Identities=22% Similarity=0.290 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcC--CCEEEEeccCCCC----------CH---HHHHHHHHHHHHh-----cCCCeEEEEccCch-----
Q 007337 506 KQRVAIARALMMN--PRILLLDEATSAL----------DA---ESEYLVQDAMDSL-----MKGRTVLVIAHRLS----- 560 (607)
Q Consensus 506 kQRialARAll~~--~~IllLDE~TSaL----------D~---~te~~i~~~l~~~-----~~~~TvI~ItHrl~----- 560 (607)
.|-+.++|++.++ |+++|+|++++-+ |+ ...+.+.+.++++ ..++|+|+++|-..
T Consensus 125 e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~ 204 (349)
T 2zr9_A 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVM 204 (349)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC------
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcc
Confidence 3567789998865 9999999999998 32 1222334444333 13899999999543
Q ss_pred -----------hh-hhcCEEEEEeCCEEeEecC
Q 007337 561 -----------TV-QSADTVAVVSDGEIVESGT 581 (607)
Q Consensus 561 -----------~l-~~aD~Iivl~~G~Ive~G~ 581 (607)
.+ ..||.++.++.+++...|+
T Consensus 205 ~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 205 FGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 13 4699999998877655554
No 149
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.97 E-value=1e-08 Score=102.46 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=34.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCC------------CCCHHHHHHHHHHHH
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATS------------ALDAESEYLVQDAMD 544 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TS------------aLD~~te~~i~~~l~ 544 (607)
.|||||+||..+++|+..+|+++ |||+. .-|.+....|.+.+.
T Consensus 137 ~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 137 EMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 58999999999999999999975 99975 236667766666553
No 150
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.94 E-value=0.015 Score=64.07 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 128 VIVGSVCTALRAWLFSSASERVVARLRKNLFS 159 (607)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 159 (607)
.++..+..+...+...++..+++.++-.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~ 108 (587)
T 3qf4_A 77 AVGGIGCTVFASYASQNFGADLRRDLFRKVLS 108 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33444444455555555556666655555543
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.88 E-value=1.8e-08 Score=98.12 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=16.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
...+++||++++|++++|+|||||||
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGK 40 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGK 40 (231)
T ss_dssp -------CCEECCCEEEEECSCC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCH
Confidence 46789999999999999999999999
No 152
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.81 E-value=1.7e-06 Score=78.62 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=45.8
Q ss_pred EeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------------e-------EEEccCCCcc
Q 007337 400 DDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------------I-------SIVSQEPVLF 449 (607)
Q Consensus 400 ~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------------i-------~~V~Q~~~Lf 449 (607)
+|++++|. ...+++++||+|++|++++|+||+|||| + .+++|++.+|
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 45566674 2468999999999999999999999999 1 2578888888
Q ss_pred cccHHHHhhc
Q 007337 450 NCSIEENIAY 459 (607)
Q Consensus 450 ~gTIreNI~~ 459 (607)
.-|+.||+.+
T Consensus 88 ~ltv~e~l~~ 97 (158)
T 1htw_A 88 RLADPEELEF 97 (158)
T ss_dssp TCSCTTHHHH
T ss_pred cCCcHHHHHH
Confidence 7788888843
No 153
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.79 E-value=3.4e-05 Score=82.58 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCC----------CCCHHHHHHHHHHHHHh-----cCCCeEEEEccCchhhh----
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATS----------ALDAESEYLVQDAMDSL-----MKGRTVLVIAHRLSTVQ---- 563 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TS----------aLD~~te~~i~~~l~~~-----~~~~TvI~ItHrl~~l~---- 563 (607)
|++++|-.+++|....|.|+++||+.+ +.|.+.++.+.+.+..+ ..+..+|..||+++.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 788999999999999999999999944 55666555555555433 13567888999986542
Q ss_pred ---hcCEEEEE
Q 007337 564 ---SADTVAVV 571 (607)
Q Consensus 564 ---~aD~Iivl 571 (607)
.+|+.+.+
T Consensus 173 R~gRFd~~i~i 183 (476)
T 2ce7_A 173 RPGRFDKKIVV 183 (476)
T ss_dssp STTSSCEEEEC
T ss_pred ccCcceeEeec
Confidence 46666554
No 154
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.77 E-value=2.1e-06 Score=82.74 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCchHHHHhCCcccccccc-CCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCC
Q 007337 467 SADIENAAKMANAHDFISNFPEKYQTFVG-ERGVRLSGGQKQRVAIARALMMNPRILLLDEATS 529 (607)
Q Consensus 467 ~~~i~~al~~a~l~~~i~~lp~G~~T~ig-e~G~~LSGGQkQRialARAll~~~~IllLDE~TS 529 (607)
++++.+++..+..++.+...+.+..+.+. ++|.-++|+ .++++++++++++|+.+++.
T Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 93 TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 46788899999999999988888777663 567788887 56778889999999988764
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.75 E-value=2.5e-06 Score=91.77 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=41.3
Q ss_pred CCChhHHHHH----------HHHHHHhcCCC-EEEEeccCCCCCHHHHHHHHHHHHHh---cC--CCeEEEEccCch
Q 007337 500 RLSGGQKQRV----------AIARALMMNPR-ILLLDEATSALDAESEYLVQDAMDSL---MK--GRTVLVIAHRLS 560 (607)
Q Consensus 500 ~LSGGQkQRi----------alARAll~~~~-IllLDE~TSaLD~~te~~i~~~l~~~---~~--~~TvI~ItHrl~ 560 (607)
.+||||+||. ++||++...|. ++++||+++.+|... ..+.+.|.++ .+ +.++|++|||++
T Consensus 268 ~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 268 ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 3688888753 46777778898 788999999988432 3344444322 22 679999999998
No 156
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.61 E-value=4.8e-06 Score=79.18 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=34.2
Q ss_pred eEEeeCCCEEEEEcCCCCcc-------------eEEEccCCCcccccHHHHhhcCC
Q 007337 419 TLKLLSGSKIALVGPSGGGK-------------ISIVSQEPVLFNCSIEENIAYGC 461 (607)
Q Consensus 419 sl~i~~Ge~vaiVG~sGsGK-------------i~~V~Q~~~Lf~gTIreNI~~g~ 461 (607)
-=++++|++++|+|++|||| +.+++||++++++ +|+.++.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCG---GGSCBCT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCH---hHhhccc
Confidence 34578999999999999999 8899999999987 6776653
No 157
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.55 E-value=2.9e-05 Score=73.29 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=66.6
Q ss_pred eEEeeCCCEEEEEcCCCCcc--------------------------------eEEEccCCCcccc-cHHHHhhcCCC---
Q 007337 419 TLKLLSGSKIALVGPSGGGK--------------------------------ISIVSQEPVLFNC-SIEENIAYGCD--- 462 (607)
Q Consensus 419 sl~i~~Ge~vaiVG~sGsGK--------------------------------i~~V~Q~~~Lf~g-TIreNI~~g~~--- 462 (607)
|+++++|+.++|+||||||| ++|++|++.+|.. +..+|+.....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYE 80 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeec
Confidence 57788999999999999999 5688888877654 33334332100
Q ss_pred --CCCCHHHHHHHHHHc----------CchHHHHhCCcc------------ccccccCCCCCCChhHHHHHHHHHHHh--
Q 007337 463 --GKASSADIENAAKMA----------NAHDFISNFPEK------------YQTFVGERGVRLSGGQKQRVAIARALM-- 516 (607)
Q Consensus 463 --~~~~~~~i~~al~~a----------~l~~~i~~lp~G------------~~T~ige~G~~LSGGQkQRialARAll-- 516 (607)
.....+++.++++.. ++.......|+. +..++-++|..-....++|++-++...
T Consensus 81 ~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~ 160 (205)
T 3tr0_A 81 RHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAH 160 (205)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 011234455555442 111222233332 112233566555566788888887755
Q ss_pred -cCCCEEEEeccCCCCCHH-HHHHHHHHHHH
Q 007337 517 -MNPRILLLDEATSALDAE-SEYLVQDAMDS 545 (607)
Q Consensus 517 -~~~~IllLDE~TSaLD~~-te~~i~~~l~~ 545 (607)
+.++.+|.++ |.+ +.+.+.+.|..
T Consensus 161 ~~~~d~vi~n~-----~~~~~~~~l~~~i~~ 186 (205)
T 3tr0_A 161 YKEFDYLVVND-----NFDQAVQNLIHIISA 186 (205)
T ss_dssp GGGCSEEEECS-----SHHHHHHHHHHHHHH
T ss_pred ccCCCEEEECC-----CHHHHHHHHHHHHHH
Confidence 3477777654 443 55555555543
No 158
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.46 E-value=1.3e-05 Score=81.13 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=58.9
Q ss_pred EEeeCCCEEEEEcCCCCcc--------------------------------------eEEEccCCCcc------cccHHH
Q 007337 420 LKLLSGSKIALVGPSGGGK--------------------------------------ISIVSQEPVLF------NCSIEE 455 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGK--------------------------------------i~~V~Q~~~Lf------~gTIre 455 (607)
+++.+|++++++|+||||| ++||+|+|-+. .-|+ |
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLTGEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHHSCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHHHhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 3456899999999999999 58999999653 4578 8
Q ss_pred Hh--hcC---------C---CCCCCHHHHHHHHHHcCchH-HHHhCCccccccccCCCCCCChhHHHHHHHHH
Q 007337 456 NI--AYG---------C---DGKASSADIENAAKMANAHD-FISNFPEKYQTFVGERGVRLSGGQKQRVAIAR 513 (607)
Q Consensus 456 NI--~~g---------~---~~~~~~~~i~~al~~a~l~~-~i~~lp~G~~T~ige~G~~LSGGQkQRialAR 513 (607)
|+ .|+ . +.....+.+.++++..++.+ .....| ..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 98 443 1 11112356888899888875 333322 348898888999987
No 159
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.39 E-value=0.00029 Score=71.91 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=63.4
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcceEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHH--HcCchHHHHhCCcccc
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAK--MANAHDFISNFPEKYQ 491 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGKi~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~--~a~l~~~i~~lp~G~~ 491 (607)
-|+.+.--+++|+.+.|.|++|+||.+++.|-..-..- =..++.++.- +.+.+++..=+- .+++. +..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSl-Ems~~ql~~Rlls~~~~v~--~~~l~~--- 107 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DDRGVAVFSL-EMSAEQLALRALSDLTSIN--MHDLES--- 107 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TTCEEEEEES-SSCHHHHHHHHHHHHHCCC--HHHHHH---
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC-CCCHHHHHHHHHHHhhCCC--HHHHhc---
Confidence 45665556899999999999999992222110000000 0011223322 566666544221 12221 111111
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCC
Q 007337 492 TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALD 532 (607)
Q Consensus 492 T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD 532 (607)
.+||++++||++.|...+.+++++|.|+|...+|
T Consensus 108 -------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 108 -------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp -------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred -------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 2699999999999999999999999999976655
No 160
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.36 E-value=1.6e-05 Score=77.86 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=26.1
Q ss_pred cEEEEeE-EEECCCCCCCcccccceEEeeC---CCEEEEEcCCCCcc
Q 007337 396 EVELDDV-WFAYPSRPNHMVLKGITLKLLS---GSKIALVGPSGGGK 438 (607)
Q Consensus 396 ~I~~~~v-sf~y~~~~~~~vL~~isl~i~~---Ge~vaiVG~sGsGK 438 (607)
.++++|+ +|+|++ +.++|+|+||+|++ |+.++|+|++||||
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGK 61 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGK 61 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCH
Confidence 5899999 999932 35799999999999 99999999999999
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.30 E-value=1e-06 Score=90.66 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=29.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCC-------CEEEEEcCCCCcc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSG-------SKIALVGPSGGGK 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~G-------e~vaiVG~sGsGK 438 (607)
++.++++..|.. ..+++++++.+++| +.++|+||+|+||
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GK 64 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGK 64 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcH
Confidence 334455555542 35899999999877 8999999999999
No 162
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.27 E-value=1e-06 Score=88.07 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=28.3
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+++++...|. ...+++++++++++| ++|+||+||||
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGK 86 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGK 86 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChH
Confidence 3445555553 235899999999999 99999999999
No 163
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.25 E-value=8e-06 Score=90.81 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=40.3
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS 545 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~ 545 (607)
..+|+|++|++..++....++.+|+|||... |++.....+.+.|++
T Consensus 182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 4599999999999999999999999999998 799888888888874
No 164
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.25 E-value=2.3e-06 Score=88.88 Aligned_cols=35 Identities=6% Similarity=-0.045 Sum_probs=30.4
Q ss_pred cCCCCCCChhHHHHHHHHHHHhcCCCEEE-EeccCC
Q 007337 495 GERGVRLSGGQKQRVAIARALMMNPRILL-LDEATS 529 (607)
Q Consensus 495 ge~G~~LSGGQkQRialARAll~~~~Ill-LDE~TS 529 (607)
.++-..+++|.+||++.+.+++.+|++++ ||+|+.
T Consensus 277 d~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 277 TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp EECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred ChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 34556689999999999988899999998 999987
No 165
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.21 E-value=4e-06 Score=85.15 Aligned_cols=122 Identities=11% Similarity=0.106 Sum_probs=70.7
Q ss_pred CcEEEEeEEEECCCCCCCcccccceEEe-------------------eCCCEEEEEcCCCCcc-----------------
Q 007337 395 GEVELDDVWFAYPSRPNHMVLKGITLKL-------------------LSGSKIALVGPSGGGK----------------- 438 (607)
Q Consensus 395 ~~I~~~~vsf~y~~~~~~~vL~~isl~i-------------------~~Ge~vaiVG~sGsGK----------------- 438 (607)
+.|+++||++.|. ++++++|+++ ++|+++||+|+|||||
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4689999999993 5899999988 9999999999999999
Q ss_pred --eEEEccCCCcccccHHHHhhcCC----CCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCCChhHHHHHHHH
Q 007337 439 --ISIVSQEPVLFNCSIEENIAYGC----DGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRLSGGQKQRVAIA 512 (607)
Q Consensus 439 --i~~V~Q~~~Lf~gTIreNI~~g~----~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~LSGGQkQRialA 512 (607)
+.++++|.+-.+...++++.+-. +...+-++..+.+ ..+..|... +--.-.+.+.+ +|+..+
T Consensus 111 G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~---------~~l~~~~~~-i~~P~~~~~~~--~~~~~~ 178 (308)
T 1sq5_A 111 RRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV---------SDLKSGVPN-VTAPVYSHLIY--DVIPDG 178 (308)
T ss_dssp CCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHH---------HHHTTTCSC-EEECCEETTTT--EECTTC
T ss_pred CeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHH---------HHHhCCCCc-eeccccccccc--Cccccc
Confidence 23444454433334555543321 1122333332222 222223220 10001111222 344333
Q ss_pred HHHhcCCCEEEEeccCCCCCH
Q 007337 513 RALMMNPRILLLDEATSALDA 533 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~ 533 (607)
.+...+++++|+|.|..-.|.
T Consensus 179 ~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 179 DKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CEEEC-CCEEEEECTTTTCCG
T ss_pred ceecCCCCEEEECchhhCCCc
Confidence 355678899999999887763
No 166
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.15 E-value=9.3e-05 Score=84.38 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=50.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCC-CCCHHHHHHHHHHHHHhcCC-CeEEE-EccCchhhh
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATS-ALDAESEYLVQDAMDSLMKG-RTVLV-IAHRLSTVQ 563 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TS-aLD~~te~~i~~~l~~~~~~-~TvI~-ItHrl~~l~ 563 (607)
-+|+|+.+|..++++++.+++++|+|||.. .+|.+.-..+.+.+....++ +++++ .||..+.+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 468999999999999999999999999997 89988666666666665544 45555 488876543
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.15 E-value=0.00013 Score=68.76 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=15.0
Q ss_pred ECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 405 AYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 405 ~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+|++++..+.++|+||++++|+.++|+|++||||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGK 38 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGK 38 (199)
T ss_dssp -------------------CCCEEEEECCTTSCH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCH
Confidence 4665666789999999999999999999999999
No 168
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.09 E-value=1.2e-06 Score=86.22 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=29.8
Q ss_pred EEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 397 VELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 397 I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.+++++...|. ...+++++++++++| ++|+||+||||
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GK 62 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGK 62 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCH
Confidence 34566666663 235899999999999 99999999999
No 169
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.05 E-value=0.12 Score=56.82 Aligned_cols=99 Identities=9% Similarity=0.035 Sum_probs=56.2
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 65 AKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSS 144 (607)
Q Consensus 65 ~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (607)
+.++.+.....+++.++..++..+.+.+...++..+.+.-.... .......+......+.+..++..++..+..+....
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (578)
T 4a82_A 5 YLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNH-ALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQY 83 (578)
T ss_dssp HHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666667777777777777877777776643211000 00001212122233344444455566667777777
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 007337 145 ASERVVARLRKNLFSHLINQ 164 (607)
Q Consensus 145 ~~~~~~~~lr~~~~~~ll~~ 164 (607)
...++..++..++-.++++.
T Consensus 84 ~~~~~~~~~~~~lr~~l~~~ 103 (578)
T 4a82_A 84 LAQWTSNKILYDIRKKLYNH 103 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77888888888877776543
No 170
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.97 E-value=0.00013 Score=74.92 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=39.1
Q ss_pred CCcEEEEeEEEECCCCCCCcccc--------------cceEEeeCCCEEEEEcCCCCcc
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLK--------------GITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~--------------~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.+.|+|+|++|.||.. ...|+ |+++.|.+||+++|+|++|+||
T Consensus 131 ~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GK 187 (422)
T 3ice_A 131 RNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGK 187 (422)
T ss_dssp TTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSH
T ss_pred cCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCCh
Confidence 4679999999999964 46888 8999999999999999999999
No 171
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.97 E-value=1.4e-05 Score=83.18 Aligned_cols=87 Identities=11% Similarity=0.052 Sum_probs=63.1
Q ss_pred CCChhHHHHHHHHHHHh-cCCCEEEEec---cC------CCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhhhhcCE
Q 007337 500 RLSGGQKQRVAIARALM-MNPRILLLDE---AT------SALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTVQSADT 567 (607)
Q Consensus 500 ~LSGGQkQRialARAll-~~~~IllLDE---~T------SaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l~~aD~ 567 (607)
.+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.|.++.+ +.|+++++|--..-+.+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45778888999999885 5999999999 65 68999999999999977655 8899999986545555777
Q ss_pred EEEEeCCEEeEecChhHHhhc
Q 007337 568 VAVVSDGEIVESGTHEELLSK 588 (607)
Q Consensus 568 Iivl~~G~Ive~G~~~eL~~~ 588 (607)
+.++++ +.+.|+.+||.++
T Consensus 338 i~~i~~--~l~~~~~~~~~~~ 356 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQNT 356 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC-
T ss_pred HHHHHH--HhcccchhHhhcC
Confidence 766654 5566777777543
No 172
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.93 E-value=0.28 Score=53.93 Aligned_cols=100 Identities=11% Similarity=0.011 Sum_probs=49.7
Q ss_pred cchHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007337 55 NVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVC 134 (607)
Q Consensus 55 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (607)
+..+..+.+++ .+.+.....+++.++..++..+...+.-.++..+.+.-. ...-.......+++.++..++
T Consensus 19 ~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~--------~~~~~~~~~~~~~~~~~~~~~ 89 (598)
T 3qf4_B 19 KNPTATLRRLL-GYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVF--------VPRRFDLLPRYMLILGTIYAL 89 (598)
T ss_dssp SCHHHHHHHHG-GGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------TTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------ccCCHHHHHHHHHHHHHHHHH
Confidence 34444444444 444444445555555555555555554444443321100 000011223334444455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007337 135 TALRAWLFSSASERVVARLRKNLFSHLIN 163 (607)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 163 (607)
..+..+.......++..++..++-.++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 118 (598)
T 3qf4_B 90 TSLLFWLQGKIMLTLSQDVVFRLRKELFE 118 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777777777766643
No 173
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.78 E-value=0.00022 Score=69.90 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=44.8
Q ss_pred eCCCEEEEEcCCCCcc------------------------------------------------eEEEcc------CCCc
Q 007337 423 LSGSKIALVGPSGGGK------------------------------------------------ISIVSQ------EPVL 448 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK------------------------------------------------i~~V~Q------~~~L 448 (607)
++|++|+|+|+||||| +++++| ..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 7899999999999999 344442 3345
Q ss_pred ccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCC
Q 007337 449 FNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERG 498 (607)
Q Consensus 449 f~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G 498 (607)
++.++.+||. .+++.+++..+..++.+......+...++++|
T Consensus 105 ~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~ 146 (252)
T 4e22_A 105 EGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRRQRAFREAP 146 (252)
T ss_dssp TTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSS
T ss_pred CCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhCC
Confidence 5556665553 24566667777777777666655555555433
No 174
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.0026 Score=65.60 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCCChhHHHHHHHHHHHhcCCCEEEEe-ccCCCCCHHHHHHHHHHHHHhcCCCeEEEEc--cCch
Q 007337 499 VRLSGGQKQRVAIARALMMNPRILLLD-EATSALDAESEYLVQDAMDSLMKGRTVLVIA--HRLS 560 (607)
Q Consensus 499 ~~LSGGQkQRialARAll~~~~IllLD-E~TSaLD~~te~~i~~~l~~~~~~~TvI~It--Hrl~ 560 (607)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++++|+|. |++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 457999999887 66656777888999 9999999998888888887765588999998 6664
No 175
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.75 E-value=1e-05 Score=84.35 Aligned_cols=63 Identities=13% Similarity=0.166 Sum_probs=51.0
Q ss_pred CC--CEEEEeccCCCCCHHHHHHHHHHHHHh-cC-CCeEEEEccCchhhh-hcCEEE-EEeCC-EEeEecCh
Q 007337 518 NP--RILLLDEATSALDAESEYLVQDAMDSL-MK-GRTVLVIAHRLSTVQ-SADTVA-VVSDG-EIVESGTH 582 (607)
Q Consensus 518 ~~--~IllLDE~TSaLD~~te~~i~~~l~~~-~~-~~TvI~ItHrl~~l~-~aD~Ii-vl~~G-~Ive~G~~ 582 (607)
|| +|.++|||++.+|++.-+...+.+... .+ ++|+ ++|.+..+. -||+|. +|++| +++..|+.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 88 999999999999999888888888776 44 4453 499997764 599999 99999 88876654
No 176
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.71 E-value=1 Score=49.48 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=6.0
Q ss_pred EEEeEEEECC
Q 007337 398 ELDDVWFAYP 407 (607)
Q Consensus 398 ~~~~vsf~y~ 407 (607)
.++|++|+-+
T Consensus 359 vl~~isl~i~ 368 (595)
T 2yl4_A 359 IFQDFSLSIP 368 (595)
T ss_dssp EEEEEEEEEC
T ss_pred cccceEEEEc
Confidence 4666666654
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.67 E-value=0.00046 Score=77.35 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=32.3
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 562 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l 562 (607)
.|..++++| |++.+|++++..+..+.. .+.++|++.|..+..
T Consensus 98 ad~~ilVvD-~~~g~~~qt~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 98 ADAALVAVS-AEAGVQVGTERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp CSEEEEEEE-TTTCSCHHHHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred cCcEEEEEc-CCcccchhHHHHHHHHHH---ccCCEEEEecCCchh
Confidence 467778888 999999999876655443 378899999998753
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.66 E-value=0.00051 Score=63.36 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.6
Q ss_pred ccceEEeeCCCEEEEEcCCCCcc
Q 007337 416 KGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 416 ~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+++++++.+| .++|+|+|||||
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGK 39 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGK 39 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSH
T ss_pred ccEEEecCCC-cEEEECCCCCCH
Confidence 6788999999 999999999999
No 179
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.65 E-value=0.00038 Score=70.67 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=64.2
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcceEEEccCCC--cccccHHHHhhcCCCCCCCHHHHHHHHHHc--CchHHHHhCCc
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGKISIVSQEPV--LFNCSIEENIAYGCDGKASSADIENAAKMA--NAHDFISNFPE 488 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGKi~~V~Q~~~--Lf~gTIreNI~~g~~~~~~~~~i~~al~~a--~l~~~i~~lp~ 488 (607)
+-|+++.--+++|+.+.|.|++|+||.++..|-.. ...| ++..+..- +.+.+++.+=+... ++. +..+-.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~sl-E~s~~~l~~R~~~~~~~i~--~~~l~~ 129 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSL-EMGKKENIKRLIVTAGSIN--AQKIKA 129 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEES-SSCHHHHHHHHHHHHTTCC--HHHHHS
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEEC-CCCHHHHHHHHHHHHcCCC--HHHHhc
Confidence 35677765689999999999999999222222110 0011 23444433 56666655433321 221 111111
Q ss_pred cccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 007337 489 KYQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531 (607)
Q Consensus 489 G~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL 531 (607)
|. ..||++++||++.|...+.++++++.|+|...+
T Consensus 130 ~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 130 AR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV 164 (315)
T ss_dssp CH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH
T ss_pred CC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 11 128999999999999999999999999986543
No 180
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.62 E-value=0.00073 Score=68.79 Aligned_cols=143 Identities=17% Similarity=0.194 Sum_probs=76.5
Q ss_pred EeeCCCEEEEEcCCCCcc------eEEEccCCCcccccHHHHhhcCCC-CCCCHHHHHHHHHHcCchH--HHHhCCcccc
Q 007337 421 KLLSGSKIALVGPSGGGK------ISIVSQEPVLFNCSIEENIAYGCD-GKASSADIENAAKMANAHD--FISNFPEKYQ 491 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK------i~~V~Q~~~Lf~gTIreNI~~g~~-~~~~~~~i~~al~~a~l~~--~i~~lp~G~~ 491 (607)
-+++|+.+.|.|++|||| ++.-.|.+.-+.| ...+..|..- ...+.+++.+.++..+.+. .++.+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg-~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l----- 176 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG-LSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNI----- 176 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC-CSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTE-----
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC-CCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccE-----
Confidence 588999999999999999 2221122210100 0012222221 1234677777777665532 11111
Q ss_pred ccccCCCCCCChh-HHHHHHHHHHHh---cCCCEEEEeccCCCCCHH-------HH--HHHHHH---HHHhc--CCCeEE
Q 007337 492 TFVGERGVRLSGG-QKQRVAIARALM---MNPRILLLDEATSALDAE-------SE--YLVQDA---MDSLM--KGRTVL 553 (607)
Q Consensus 492 T~ige~G~~LSGG-QkQRialARAll---~~~~IllLDE~TSaLD~~-------te--~~i~~~---l~~~~--~~~TvI 553 (607)
.+.+ ..++. +.+.+..+++++ .+++++|+|+.++-.+.+ ++ ..+.+. |.++. .++|+|
T Consensus 177 -~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi 252 (324)
T 2z43_A 177 -YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVI 252 (324)
T ss_dssp -EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEE
T ss_pred -EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 0111 11222 456788888888 569999999999876432 11 223333 33332 278899
Q ss_pred EEccCchhh-----------------hhcCEEEEEeC
Q 007337 554 VIAHRLSTV-----------------QSADTVAVVSD 573 (607)
Q Consensus 554 ~ItHrl~~l-----------------~~aD~Iivl~~ 573 (607)
++.|-.... ..+|.++.++.
T Consensus 253 ~~nq~~~~~~~~~~~~~~~~gg~~l~~~~d~~l~l~r 289 (324)
T 2z43_A 253 ITNQVMARPDMFYGDPTVAVGGHTLYHVPGIRIQLKK 289 (324)
T ss_dssp EEEEC------------------------CEEEEEEE
T ss_pred EEcceeecCCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence 888754221 24788888864
No 181
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.59 E-value=0.00053 Score=63.73 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=6.9
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHHh-----cCCCEEEEec
Q 007337 488 EKYQTFVGERGVRLSGGQKQRVAIARALM-----MNPRILLLDE 526 (607)
Q Consensus 488 ~G~~T~ige~G~~LSGGQkQRialARAll-----~~~~IllLDE 526 (607)
+-+...+-++|..-....+||++-|++-+ +.+|.+|..+
T Consensus 126 ~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 126 EDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ---------------------------------CCCCSEEEECS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCcEEEECc
Confidence 45666777888887788899999998765 5677777765
No 182
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.56 E-value=0.00076 Score=70.05 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhhcCEEEE
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQSADTVAV 570 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~aD~Iiv 570 (607)
+.+|+++|..+|+++++|||| |+++- ..+++....+.+++.++|..+....+|+++.
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~ 255 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAAETGHLVFGTLHTNTAIDTIHRIVD 255 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHHTTTCEEEECCCCCSHHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHHhcCCEEEEEECcchHHHHHHHHHH
Confidence 569999999999999999999 77653 3344444458999999998776666666543
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.52 E-value=0.00078 Score=63.51 Aligned_cols=70 Identities=14% Similarity=0.125 Sum_probs=44.9
Q ss_pred CChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh---hhhcCEEEEEeC
Q 007337 501 LSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST---VQSADTVAVVSD 573 (607)
Q Consensus 501 LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~---l~~aD~Iivl~~ 573 (607)
.+.|+.+|..+++.++.+|+.+-.+ ++.++|...+.+.+.+... .+.++|+-+|-+.. .+.||.+++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3788999999999999888654333 3345666666666655543 45688888887754 467999999964
No 184
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.44 E-value=1.4 Score=48.07 Aligned_cols=38 Identities=13% Similarity=0.131 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007337 128 VIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQE 165 (607)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~ 165 (607)
.++..++..+..+.......+...++..++-.++++.-
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 108 (582)
T 3b60_A 71 VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHM 108 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666677777777777777777777765443
No 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.23 E-value=0.00076 Score=67.92 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=49.3
Q ss_pred EEeeCCCEEEEEcCCCCcc---------------------------------------eEEEccCCCc------------
Q 007337 420 LKLLSGSKIALVGPSGGGK---------------------------------------ISIVSQEPVL------------ 448 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGK---------------------------------------i~~V~Q~~~L------------ 448 (607)
|++.+|++++|+||||||| ++||+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 4567899999999999999 4688898853
Q ss_pred ----c-cccHHHHhhcCCCC--CCCHHHHHHHHHHcCch-HHHHhCCc
Q 007337 449 ----F-NCSIEENIAYGCDG--KASSADIENAAKMANAH-DFISNFPE 488 (607)
Q Consensus 449 ----f-~gTIreNI~~g~~~--~~~~~~i~~al~~a~l~-~~i~~lp~ 488 (607)
| +-|+ ||+.|+... ...++++.++++..+|. +.....|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3 4477 899885310 12245689999999994 55555553
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.13 E-value=0.0028 Score=65.44 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=37.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-C-CeEEEEccCchhh
Q 007337 500 RLSGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMK-G-RTVLVIAHRLSTV 562 (607)
Q Consensus 500 ~LSGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~-~TvI~ItHrl~~l 562 (607)
..++.++|+..++++.+++|+++||.-..+..|..++ ...+.++.+.+ + +|+++++ ..+.+
T Consensus 154 q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-~~~~l~~~~~~~~~~~i~V~n-K~Dl~ 216 (360)
T 3t34_A 154 QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-DAIKISREVDPSGDRTFGVLT-KIDLM 216 (360)
T ss_dssp CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC-HHHHHHHHSCTTCTTEEEEEE-CGGGC
T ss_pred CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH-HHHHHHHHhcccCCCEEEEEe-CCccC
Confidence 3678899999999999999998777743334454432 23334444322 3 4555555 44443
No 187
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.92 E-value=0.014 Score=61.32 Aligned_cols=138 Identities=21% Similarity=0.137 Sum_probs=76.9
Q ss_pred EEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc-----------------eEEEccCCCccc-----ccHHH-
Q 007337 399 LDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK-----------------ISIVSQEPVLFN-----CSIEE- 455 (607)
Q Consensus 399 ~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK-----------------i~~V~Q~~~Lf~-----gTIre- 455 (607)
.++++..|++. . ++++|+ +|+.++++|++|||| +.++..|++=-. .+.++
T Consensus 79 ~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~ 151 (425)
T 2ffh_A 79 YEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEK 151 (425)
T ss_dssp HHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhccc
Confidence 34555566432 1 567777 899999999999999 667766653211 12222
Q ss_pred -HhhcCC-CCCCCHHHH-HHHHHHcCchHHHHhC-CccccccccCCCCCCC---hhHHHHHHHHHHHhcCCCEEEEeccC
Q 007337 456 -NIAYGC-DGKASSADI-ENAAKMANAHDFISNF-PEKYQTFVGERGVRLS---GGQKQRVAIARALMMNPRILLLDEAT 528 (607)
Q Consensus 456 -NI~~g~-~~~~~~~~i-~~al~~a~l~~~i~~l-p~G~~T~ige~G~~LS---GGQkQRialARAll~~~~IllLDE~T 528 (607)
|+.+.. ....+..++ .++ ++.+ .++||..|=+....++ .-..+..+++|++..++-++++| ++
T Consensus 152 ~gv~v~~~~~~~~p~~i~~~~---------l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~ 221 (425)
T 2ffh_A 152 VGVPVLEVMDGESPESIRRRV---------EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AM 221 (425)
T ss_dssp HTCCEEECCTTCCHHHHHHHH---------HHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GG
T ss_pred CCccEEecCCCCCHHHHHHHH---------HHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-cc
Confidence 332211 112334444 223 3333 2577776655443443 34567778888886666777788 45
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEcc
Q 007337 529 SALDAESEYLVQDAMDSLMKGRTVLVIAH 557 (607)
Q Consensus 529 SaLD~~te~~i~~~l~~~~~~~TvI~ItH 557 (607)
++.|..... +.+... -+.|.|++|+
T Consensus 222 tgq~av~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 222 TGQEALSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp GTTHHHHHH---HHHHHH-TCCCEEEEES
T ss_pred chHHHHHHH---HHHHhc-CCceEEEEeC
Confidence 555554221 223322 2457777775
No 188
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.82 E-value=0.019 Score=60.38 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=13.9
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
++..++++|++||||
T Consensus 96 ~~~vI~lvG~~GsGK 110 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGK 110 (433)
T ss_dssp SSEEEEECCCTTSCH
T ss_pred CCeEEEEECCCCCCH
Confidence 568999999999999
No 189
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.78 E-value=0.0024 Score=64.21 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=44.6
Q ss_pred EEeeCCCEEEEEcCCCCcc--------------------------------------eEEEccCCCccc-----ccHHHH
Q 007337 420 LKLLSGSKIALVGPSGGGK--------------------------------------ISIVSQEPVLFN-----CSIEEN 456 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGK--------------------------------------i~~V~Q~~~Lf~-----gTIreN 456 (607)
+++.+|++++|+|+||||| ++|++|+|-++. -|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 5677999999999999999 478999997764 578 99
Q ss_pred hh--cC------------C--CCCCCHHHHHHHHHHcCchHH
Q 007337 457 IA--YG------------C--DGKASSADIENAAKMANAHDF 482 (607)
Q Consensus 457 I~--~g------------~--~~~~~~~~i~~al~~a~l~~~ 482 (607)
|. |. + ........+.++++..++.+.
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 93 21 0 001123457888888887653
No 190
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.73 E-value=0.00089 Score=62.76 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=16.0
Q ss_pred eEEeeCCCEEEEEcCCCCcc
Q 007337 419 TLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 419 sl~i~~Ge~vaiVG~sGsGK 438 (607)
|+...+|+.++|+|||||||
T Consensus 13 ~~~~~~g~~ivl~GPSGaGK 32 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGR 32 (197)
T ss_dssp ---CCSCCEEEEECCTTSSH
T ss_pred cCCCCCCCEEEEECcCCCCH
Confidence 34456899999999999999
No 191
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.65 E-value=0.028 Score=58.02 Aligned_cols=45 Identities=11% Similarity=0.015 Sum_probs=32.3
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhc----CCCeEEEEccCchhh
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLM----KGRTVLVIAHRLSTV 562 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~----~~~TvI~ItHrl~~l 562 (607)
.+|.++++||+... |......+.+.+.+.. .+.++|++||+....
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999987 7776666666664432 366888889988543
No 192
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.62 E-value=0.019 Score=55.17 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCC-CCCHHHHHHHHHHHHHhcCCCeEEE
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATS-ALDAESEYLVQDAMDSLMKGRTVLV 554 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TS-aLD~~te~~i~~~l~~~~~~~TvI~ 554 (607)
+.|+-.+. .+.-+++-+++|+||+-. .+|........+.+....++..+|+
T Consensus 162 Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 162 TVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp EHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEE
Confidence 45655554 344689999999999976 4776655434444544444443333
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.59 E-value=0.044 Score=54.43 Aligned_cols=71 Identities=27% Similarity=0.279 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHH----------HHHHHHHHHHhcC-----CCeEEEEccCchh-----
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAES----------EYLVQDAMDSLMK-----GRTVLVIAHRLST----- 561 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~t----------e~~i~~~l~~~~~-----~~TvI~ItHrl~~----- 561 (607)
++++++|-.+++|...+|.++++||+.+-.+... ...+...+..... +..+|..|++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4688888889998889999999999988776432 2223344443321 2346667887643
Q ss_pred hhhcCEEEEEe
Q 007337 562 VQSADTVAVVS 572 (607)
Q Consensus 562 l~~aD~Iivl~ 572 (607)
.+++|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 34678776653
No 194
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.57 E-value=0.13 Score=52.53 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=17.0
Q ss_pred EeeCCCEEEEEcCCCCcc
Q 007337 421 KLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK 438 (607)
-+++|+.+.|.||+||||
T Consensus 57 Gi~~G~i~~I~GppGsGK 74 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGK 74 (356)
T ss_dssp SEETTEEEEEEESTTSSH
T ss_pred CccCCcEEEEECCCCCCH
Confidence 388999999999999999
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.49 E-value=0.0046 Score=63.35 Aligned_cols=143 Identities=13% Similarity=0.139 Sum_probs=76.2
Q ss_pred EeeCCCEEEEEcCCCCcc------eEEEccCCCcccccHHHHhhcCC-CCCCCHHHHHHHHHHcCchH--HHHhCCcccc
Q 007337 421 KLLSGSKIALVGPSGGGK------ISIVSQEPVLFNCSIEENIAYGC-DGKASSADIENAAKMANAHD--FISNFPEKYQ 491 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK------i~~V~Q~~~Lf~gTIreNI~~g~-~~~~~~~~i~~al~~a~l~~--~i~~lp~G~~ 491 (607)
-+++|+.+.|.|++|||| ++.-.|.|.-+.|. ..+..|.. +...+.+++.+.++..+++. .++.+ +
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~-~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l---~- 192 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP-GGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNV---L- 192 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBC-CCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTE---E-
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCC-CCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhce---e-
Confidence 488999999999999999 22211222111000 01112221 11234667777666655532 11211 0
Q ss_pred ccccCCCCCCCh-hHHHHHHHHHHHh----cCCCEEEEeccCCCCCHH-------HH-----HHHHHHHHHhc--CCCeE
Q 007337 492 TFVGERGVRLSG-GQKQRVAIARALM----MNPRILLLDEATSALDAE-------SE-----YLVQDAMDSLM--KGRTV 552 (607)
Q Consensus 492 T~ige~G~~LSG-GQkQRialARAll----~~~~IllLDE~TSaLD~~-------te-----~~i~~~l~~~~--~~~Tv 552 (607)
+-. ..++ -+.+.+..++.++ .+++++|+|+.++-.+++ ++ ..+...|.++. .+.|+
T Consensus 193 --~~~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~V 267 (343)
T 1v5w_A 193 --YAR---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAV 267 (343)
T ss_dssp --EEE---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred --Eee---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 000 0122 2346666677777 568999999999877543 11 22333333332 27788
Q ss_pred EEEccCchh-------------------h-hhcCEEEEEeC
Q 007337 553 LVIAHRLST-------------------V-QSADTVAVVSD 573 (607)
Q Consensus 553 I~ItHrl~~-------------------l-~~aD~Iivl~~ 573 (607)
|++.|--.. + ..+|.++.|+.
T Consensus 268 i~~nq~~~~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r 308 (343)
T 1v5w_A 268 FVTNQMTADPGATMTFQADPKKPIGGHILAHASTTRISLRK 308 (343)
T ss_dssp EEEECC-------------------CCTTTTSSSEEEEEEE
T ss_pred EEEeeceecCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence 888774321 2 34788888874
No 196
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.47 E-value=0.0054 Score=65.42 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=28.4
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
++.++++.. ..+|+|+||+|++ ++++|+|||||||
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGK 42 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGK 42 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSH
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcH
Confidence 455555432 1479999999999 9999999999999
No 197
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.36 E-value=4.1 Score=44.45 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007337 128 VIVGSVCTALRAWLFSSASERVVARLRKNLFSHLINQ 164 (607)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 164 (607)
.++..++..+..+.......+...++..++-.++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (582)
T 3b5x_A 71 ILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNH 107 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666677777777777776666544
No 198
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.34 E-value=0.12 Score=52.87 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=43.9
Q ss_pred HHHHHHHHHHh--cCCCEEEEeccCCCCC-HH------------HHHHHHHHHHHhc-----CCCeEEEEccCch-----
Q 007337 506 KQRVAIARALM--MNPRILLLDEATSALD-AE------------SEYLVQDAMDSLM-----KGRTVLVIAHRLS----- 560 (607)
Q Consensus 506 kQRialARAll--~~~~IllLDE~TSaLD-~~------------te~~i~~~l~~~~-----~~~TvI~ItHrl~----- 560 (607)
.|-+.++|.+. .+++++|+|.+++-.. .+ .++.+.+.++++. .++|+|++.|--.
T Consensus 127 e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~ 206 (356)
T 1u94_A 127 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 206 (356)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------
T ss_pred HHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcc
Confidence 35567777775 5799999999998763 21 1123333443331 3789998887432
Q ss_pred -----------hh-hhcCEEEEEeCCEEe
Q 007337 561 -----------TV-QSADTVAVVSDGEIV 577 (607)
Q Consensus 561 -----------~l-~~aD~Iivl~~G~Iv 577 (607)
.+ ..||.++.+...+..
T Consensus 207 fg~~~~~~gG~~l~~~advrl~l~r~~~~ 235 (356)
T 1u94_A 207 FGNPETTTGGNALKFYASVRLDIRRIGAV 235 (356)
T ss_dssp ------CTTCSHHHHHCSEEEEEEEEEEE
T ss_pred cCCCcccCCCcceeeeccEEEEEEEeeee
Confidence 12 358888888765544
No 199
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.13 E-value=0.00038 Score=74.88 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=27.4
Q ss_pred EEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 398 ELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 398 ~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+++++...|. .+..++++++++++| +.|+||+|+||
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGK 77 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGK 77 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCH
Confidence 3444444342 235789999999999 99999999999
No 200
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.89 E-value=0.073 Score=56.40 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=57.3
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcceEEEccCCCcccccH--HHHhhcCCCCCCCHHHHHHHHH--HcCchHHHHhCCcc
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGKISIVSQEPVLFNCSI--EENIAYGCDGKASSADIENAAK--MANAHDFISNFPEK 489 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGKi~~V~Q~~~Lf~gTI--reNI~~g~~~~~~~~~i~~al~--~a~l~~~i~~lp~G 489 (607)
-|+.+.--+++|+.+.|.|++|+||.+++-|-.. +... ..+..+..- +.+.+++.+-+. .+++. ...+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~--~~a~~~g~~vl~~sl-E~~~~~l~~R~~~~~~~i~--~~~l--- 260 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ--NAALKEGVGVGIYSL-EMPAAQLTLRMMCSEARID--MNRV--- 260 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEES-SSCHHHHHHHHHHHHTTCC--TTTC---
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEEC-CCCHHHHHHHHHHHHcCCC--HHHH---
Confidence 4666654589999999999999999222211000 0000 011223322 455665544321 22221 1111
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCC
Q 007337 490 YQTFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSAL 531 (607)
Q Consensus 490 ~~T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaL 531 (607)
. . .+||..+++|+.-|-..+.+.++++.|+|...+
T Consensus 261 -~-----~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~ 295 (444)
T 2q6t_A 261 -R-----L-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTL 295 (444)
T ss_dssp -C-----G-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBH
T ss_pred -h-----C-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCH
Confidence 1 1 258888999988887777788888888764443
No 201
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.87 E-value=0.045 Score=57.98 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=43.2
Q ss_pred hc-CCCEEEEeccCCCCCH-HHHHHHHHHHHHhc-CCCeEEEEccCch-hhhh-cCEEEE-EeCCEEeEecCh
Q 007337 516 MM-NPRILLLDEATSALDA-ESEYLVQDAMDSLM-KGRTVLVIAHRLS-TVQS-ADTVAV-VSDGEIVESGTH 582 (607)
Q Consensus 516 l~-~~~IllLDE~TSaLD~-~te~~i~~~l~~~~-~~~TvI~ItHrl~-~l~~-aD~Iiv-l~~G~Ive~G~~ 582 (607)
++ ++++|++||+..-.+. .+...+.+.+..+. .++++|+.||+.. .+.. .+++.- ++.|.+++.+.+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 45 8999999999988775 46777777776643 4678888999843 2211 122221 345666665544
No 202
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.76 E-value=0.0049 Score=63.63 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=36.3
Q ss_pred cCCCCCCChhHHHHHHHH----HHH-hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 007337 495 GERGVRLSGGQKQRVAIA----RAL-MMNPRILLLDEATSALDAESEYLVQDAMDSLM 547 (607)
Q Consensus 495 ge~G~~LSGGQkQRialA----RAl-l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~ 547 (607)
+.+--.+|+|++||+.++ +++ ..+|++ +|+||+|.++-..+.+.|.+..
T Consensus 299 ~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 299 LNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 444445788899988887 666 444454 8999999998888888876643
No 203
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.71 E-value=0.057 Score=57.52 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=56.9
Q ss_pred ccccCCCCCCChhHHHHHHHHH--HHhc---------------CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 007337 492 TFVGERGVRLSGGQKQRVAIAR--ALMM---------------NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLV 554 (607)
Q Consensus 492 T~ige~G~~LSGGQkQRialAR--All~---------------~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ 554 (607)
+........+||||+|-.-+|. |+++ .-.+++|||| |-+|++..+...+.++++ +-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 4455556779999999543332 2221 1257999999 999999999999999876 677777
Q ss_pred EccCchhhhhcCEEEEEe
Q 007337 555 IAHRLSTVQSADTVAVVS 572 (607)
Q Consensus 555 ItHrl~~l~~aD~Iivl~ 572 (607)
+|=. ...+.+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7766 6667889999875
No 204
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.16 E-value=0.016 Score=58.43 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=64.9
Q ss_pred cccccceEEeeCCC------EEEEEcCCCCcc-------------------eEEEccCCCcccccHHHHhh----cCCCC
Q 007337 413 MVLKGITLKLLSGS------KIALVGPSGGGK-------------------ISIVSQEPVLFNCSIEENIA----YGCDG 463 (607)
Q Consensus 413 ~vL~~isl~i~~Ge------~vaiVG~sGsGK-------------------i~~V~Q~~~Lf~gTIreNI~----~g~~~ 463 (607)
+.|++++..+.+++ .+||+|+||||| ++++++|.+..+...++... +|.|.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~ 153 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPE 153 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcc
Confidence 46778888887776 899999999999 77899999888766655432 34343
Q ss_pred CCCHHHHHHHHHHcCchHHHHhCCcccc-ccccCCCCCCChhHHHHHHHHHHHhcCCCEEEEeccCCCCCH
Q 007337 464 KASSADIENAAKMANAHDFISNFPEKYQ-TFVGERGVRLSGGQKQRVAIARALMMNPRILLLDEATSALDA 533 (607)
Q Consensus 464 ~~~~~~i~~al~~a~l~~~i~~lp~G~~-T~ige~G~~LSGGQkQRialARAll~~~~IllLDE~TSaLD~ 533 (607)
..+.+.+.+.++ .+..|.+ ..+- ..|-+..+|+.-+......|+|+|++.+..-.|.
T Consensus 154 ~~D~~~l~~~L~---------~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 154 SYDMPSLLRVLN---------AIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp GBCHHHHHHHHH---------HHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cccHHHHHHHHH---------hhhccccccccc----hhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 345554444443 3333431 1110 0111112232222334578999999998875544
No 205
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.04 E-value=0.019 Score=53.57 Aligned_cols=19 Identities=47% Similarity=0.643 Sum_probs=15.8
Q ss_pred EEeeCCCEEEEEcCCCCcc
Q 007337 420 LKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGK 438 (607)
++|++|+.++|+|+|||||
T Consensus 1 m~i~~g~~i~l~G~~GsGK 19 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGK 19 (207)
T ss_dssp ---CCCCEEEEECSTTSCH
T ss_pred CCCCCCCEEEEECCCCCCH
Confidence 4688999999999999999
No 206
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.65 E-value=0.011 Score=55.37 Aligned_cols=27 Identities=30% Similarity=0.254 Sum_probs=24.3
Q ss_pred CcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 412 HMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 412 ~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
....+..++..++|+.++|+|+|||||
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGK 38 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGK 38 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCH
Confidence 346788888899999999999999999
No 207
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.40 E-value=0.11 Score=52.27 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=29.3
Q ss_pred hcCCCEEEEeccCCCC-CHHHHHHHHHHHHHhc-CCCeEEEEccCc
Q 007337 516 MMNPRILLLDEATSAL-DAESEYLVQDAMDSLM-KGRTVLVIAHRL 559 (607)
Q Consensus 516 l~~~~IllLDE~TSaL-D~~te~~i~~~l~~~~-~~~TvI~ItHrl 559 (607)
++++++|++||+..-- |..+...+...+.... .++.+|+.+++.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5679999999997633 3356666777766543 356666666643
No 208
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.34 E-value=0.14 Score=54.26 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=19.7
Q ss_pred cccceEEeeCCCEEEEEcCCCCcc
Q 007337 415 LKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 415 L~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
|+.+.--+++|+.+.|.|++|+||
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GK 210 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGK 210 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCh
Confidence 444433578999999999999999
No 209
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.05 E-value=0.2 Score=49.24 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCC----------CHHHHHHHHHHHHHhc-----CCCeEEEEccCchhhh
Q 007337 508 RVAIARALMMNPRILLLDEATSAL----------DAESEYLVQDAMDSLM-----KGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaL----------D~~te~~i~~~l~~~~-----~~~TvI~ItHrl~~l~ 563 (607)
+-.+.++--.+|.|+++||.-.-. |.+....+.+.+..+- .+..+|..|++.+.+.
T Consensus 100 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 100 KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 334445555678999999985432 4455566666555431 2345777788776543
No 210
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.67 E-value=0.38 Score=49.40 Aligned_cols=70 Identities=17% Similarity=0.178 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhc--CCCEEEEeccCCCCC-H------------HHHHHHHHHHHHh---c--CCCeEEEEccCchh----
Q 007337 506 KQRVAIARALMM--NPRILLLDEATSALD-A------------ESEYLVQDAMDSL---M--KGRTVLVIAHRLST---- 561 (607)
Q Consensus 506 kQRialARAll~--~~~IllLDE~TSaLD-~------------~te~~i~~~l~~~---~--~~~TvI~ItHrl~~---- 561 (607)
.|-+.+++.+.+ +++++|+|..++-.- . ..++.+.+.++++ . .++|+|++.|--.-
T Consensus 138 e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~ 217 (366)
T 1xp8_A 138 EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVM 217 (366)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-------
T ss_pred HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcc
Confidence 356677888874 589999999987551 1 1123344555444 1 36777777663211
Q ss_pred -------------hhhcCEEEEEeCCE
Q 007337 562 -------------VQSADTVAVVSDGE 575 (607)
Q Consensus 562 -------------l~~aD~Iivl~~G~ 575 (607)
-..||.++.+..++
T Consensus 218 fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 218 YGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp --------CHHHHHHHCSEEEEEEEES
T ss_pred cCCccccCCcchhhheeeEEEEEEecc
Confidence 13488888887554
No 211
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.62 E-value=0.044 Score=50.16 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=14.9
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.+|+.++|+|||||||
T Consensus 3 ~~g~~i~i~GpsGsGK 18 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGR 18 (180)
T ss_dssp CCCCEEEEECCTTSSH
T ss_pred CCCCEEEEECCCCCCH
Confidence 3799999999999999
No 212
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.55 E-value=0.17 Score=50.30 Aligned_cols=35 Identities=14% Similarity=0.333 Sum_probs=25.1
Q ss_pred HHHHHHhcCC-CEEEEeccCCCCCHHHHHHHHHHHHH
Q 007337 510 AIARALMMNP-RILLLDEATSALDAESEYLVQDAMDS 545 (607)
Q Consensus 510 alARAll~~~-~IllLDE~TSaLD~~te~~i~~~l~~ 545 (607)
.+..++.+.| .++++||+ -.+++.....+.+.+.+
T Consensus 110 ~~~~~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 110 QLTEAVRRRPYSVILFDAI-EKAHPDVFNILLQMLDD 145 (311)
T ss_dssp HHHHHHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhc
Confidence 3455555544 79999998 45678777777777765
No 213
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.47 E-value=1.5 Score=41.63 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=34.2
Q ss_pred cCCCEEEEeccCCC----CCHHHHHHHHHHHHHhc--CCCeEEEEccCchh----------h-hhcCEEEEEe
Q 007337 517 MNPRILLLDEATSA----LDAESEYLVQDAMDSLM--KGRTVLVIAHRLST----------V-QSADTVAVVS 572 (607)
Q Consensus 517 ~~~~IllLDE~TSa----LD~~te~~i~~~l~~~~--~~~TvI~ItHrl~~----------l-~~aD~Iivl~ 572 (607)
.+++.+++|.-+.- -|......+...|.++. .++|+++++|--.. + ..||-|+.|+
T Consensus 134 ~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred cCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 47899999976532 13333444445554433 37899999885421 1 2589998885
No 214
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=92.30 E-value=0.056 Score=54.08 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=34.1
Q ss_pred CChhHHHHHHHHHHHh--cCCCEEEEeccCCCCCHHH-HHHHHHHHHHhcC--C--CeEEEEccCchhh
Q 007337 501 LSGGQKQRVAIARALM--MNPRILLLDEATSALDAES-EYLVQDAMDSLMK--G--RTVLVIAHRLSTV 562 (607)
Q Consensus 501 LSGGQkQRialARAll--~~~~IllLDE~TSaLD~~t-e~~i~~~l~~~~~--~--~TvI~ItHrl~~l 562 (607)
+|+|++ .+++++. ..|.|+++ +-+|... ...+.+.+.++.+ + .++.+.||.-.-+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 899986 5667666 67888888 5677765 4555555555432 2 2444556665433
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.09 E-value=0.18 Score=46.69 Aligned_cols=13 Identities=38% Similarity=0.486 Sum_probs=12.4
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
..+.|.||+|+||
T Consensus 55 ~~~~l~G~~GtGK 67 (202)
T 2w58_A 55 KGLYLHGSFGVGK 67 (202)
T ss_dssp CEEEEECSTTSSH
T ss_pred CeEEEECCCCCCH
Confidence 7899999999999
No 216
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.99 E-value=0.041 Score=56.49 Aligned_cols=45 Identities=13% Similarity=0.213 Sum_probs=26.5
Q ss_pred CCCEEEEeccCCCCCH---HHHHHHHHHHHHh-cCCCeEEEEccCchhh
Q 007337 518 NPRILLLDEATSALDA---ESEYLVQDAMDSL-MKGRTVLVIAHRLSTV 562 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~---~te~~i~~~l~~~-~~~~TvI~ItHrl~~l 562 (607)
.|.++++||+....|. +.-..+.+.+... ..+.++|++||+.+..
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 3789999999887643 2222333333221 1246789999988643
No 217
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.72 E-value=0.2 Score=57.22 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCC------HHHHHHHHHHHHHhcC------CCeEEEEccCchhh
Q 007337 507 QRVAIARALMMNPRILLLDEATSALD------AESEYLVQDAMDSLMK------GRTVLVIAHRLSTV 562 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD------~~te~~i~~~l~~~~~------~~TvI~ItHrl~~l 562 (607)
-+-.+..|.-..|.++++||+-+.+. .+.++.+.+.+..++. +..+|..||+.+.+
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 34455556667799999999966553 2334455555544332 34778889997655
No 218
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.66 E-value=0.043 Score=51.94 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=32.2
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV 562 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l 562 (607)
++.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 468999999876 68777777777776554456778888876543
No 219
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.57 E-value=0.36 Score=45.80 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=35.1
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC-----------chhhhhcCEEEEEe
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR-----------LSTVQSADTVAVVS 572 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHr-----------l~~l~~aD~Iivl~ 572 (607)
+++++++||+-- ++.+.-. +...|.+ .+.++|++-|+ ...+..||.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6654222 2233444 38899999993 24567899999874
No 220
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=91.52 E-value=0.072 Score=54.63 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=22.7
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcc
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.++++++++++| .++|+|||||||
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GK 39 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGK 39 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCCh
Confidence 468999999999 999999999999
No 221
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.43 E-value=0.073 Score=53.71 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.4
Q ss_pred cccceEEeeCCCEEEEEcCCCCcc
Q 007337 415 LKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 415 L~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
++++||++++|+.++|+|++||||
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GK 118 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGK 118 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSH
T ss_pred ccCccccCCCCeEEEEECCCCCCH
Confidence 457888889999999999999999
No 222
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=91.41 E-value=0.27 Score=52.18 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~ 563 (607)
+.|++-...++..+++++++|+....+.-.......+.+.+++ .++.+|+|.+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchh
Confidence 3588888999999999998887554444333334456666654 4789999999887653
No 223
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.32 E-value=0.041 Score=55.54 Aligned_cols=144 Identities=20% Similarity=0.185 Sum_probs=73.1
Q ss_pred EeeCCCEEEEEcCCCCcc------eEE---Ecc-CCCcc----cccHH-HHhhcCCC-CCCCHHHHHHHHHHcCchH--H
Q 007337 421 KLLSGSKIALVGPSGGGK------ISI---VSQ-EPVLF----NCSIE-ENIAYGCD-GKASSADIENAAKMANAHD--F 482 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK------i~~---V~Q-~~~Lf----~gTIr-eNI~~g~~-~~~~~~~i~~al~~a~l~~--~ 482 (607)
-+++|+.+.|.|++|||| +++ .++ +.|-. .|-.. .+..|..- ...+.+++.+-++..+++. .
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 478999999999999999 221 111 00000 01000 12233221 1234677777777666532 1
Q ss_pred HHhCCccccccccCCCCCCChh-HHHHHHHHHHHhc---CCCEEEEeccCCCCCH---------HHHHHHH---HHHHHh
Q 007337 483 ISNFPEKYQTFVGERGVRLSGG-QKQRVAIARALMM---NPRILLLDEATSALDA---------ESEYLVQ---DAMDSL 546 (607)
Q Consensus 483 i~~lp~G~~T~ige~G~~LSGG-QkQRialARAll~---~~~IllLDE~TSaLD~---------~te~~i~---~~l~~~ 546 (607)
++.+ .+-+ ..+.- +.+-+..++.+++ +++++|+|..++-... +.+..+. ..|.++
T Consensus 174 ~~~l------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~l 244 (322)
T 2i1q_A 174 LDNT------FVAR---AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKL 244 (322)
T ss_dssp HHTE------EEEE---CSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred hcCE------EEEe---CCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 1111 0100 01222 3345555666664 5899999998865422 1112233 333333
Q ss_pred c--CCCeEEEEccCch----------------hh-hhcCEEEEEeC
Q 007337 547 M--KGRTVLVIAHRLS----------------TV-QSADTVAVVSD 573 (607)
Q Consensus 547 ~--~~~TvI~ItHrl~----------------~l-~~aD~Iivl~~ 573 (607)
. .++|+|++.|--. .+ ..+|.++.++.
T Consensus 245 a~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 245 ADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp HHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred HHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 2 3677777765211 12 35888998874
No 224
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.21 E-value=0.079 Score=49.73 Aligned_cols=16 Identities=56% Similarity=0.750 Sum_probs=15.3
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++|+.++|+|||||||
T Consensus 6 ~~g~~i~l~GpsGsGK 21 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGK 21 (208)
T ss_dssp CCCCEEEEECCTTSCH
T ss_pred CCCcEEEEECcCCCCH
Confidence 5899999999999999
No 225
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.03 E-value=0.45 Score=47.71 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=16.8
Q ss_pred EeeCCCEEEEEcCCCCcc
Q 007337 421 KLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK 438 (607)
-+++|..+.|.||+|+||
T Consensus 119 Gi~~gsviLI~GpPGsGK 136 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGK 136 (331)
T ss_dssp EEEESEEEEEECSCSSSH
T ss_pred CCCCCcEEEEEcCCCCCH
Confidence 578999999999999999
No 226
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.01 E-value=0.53 Score=45.38 Aligned_cols=22 Identities=36% Similarity=0.729 Sum_probs=13.9
Q ss_pred cccceEEeeCCCEEEEEcCCCCcc
Q 007337 415 LKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 415 L~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
++++++.+++| +.|+||+|+||
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGK 58 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGK 58 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCH
T ss_pred HHHcCCCCCCe--EEEECcCCCCH
Confidence 44455555555 99999999999
No 227
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.63 E-value=0.32 Score=45.91 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=26.7
Q ss_pred cCCCEEEEeccCCCCC-HHHHHHHHHHHHHhcC-CCe-EEEEccC
Q 007337 517 MNPRILLLDEATSALD-AESEYLVQDAMDSLMK-GRT-VLVIAHR 558 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD-~~te~~i~~~l~~~~~-~~T-vI~ItHr 558 (607)
.+++++++||+...-+ ......+.+.+..... ++. +|++++.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~ 147 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASA 147 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 6789999999766433 2235566666655432 444 7777764
No 228
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.57 E-value=1.3 Score=46.53 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=13.5
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
++..++++|++||||
T Consensus 99 ~p~vIlivG~~G~GK 113 (443)
T 3dm5_A 99 KPTILLMVGIQGSGK 113 (443)
T ss_dssp SSEEEEEECCTTSSH
T ss_pred CCeEEEEECcCCCCH
Confidence 457899999999999
No 229
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=90.23 E-value=0.23 Score=47.42 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=33.0
Q ss_pred CChhHHHHHHHHHHH---hcCCCEEEEeccCCCCCHHHHHHHHHHHHHh---cCCCeEEEEcc
Q 007337 501 LSGGQKQRVAIARAL---MMNPRILLLDEATSALDAESEYLVQDAMDSL---MKGRTVLVIAH 557 (607)
Q Consensus 501 LSGGQkQRialARAl---l~~~~IllLDE~TSaLD~~te~~i~~~l~~~---~~~~TvI~ItH 557 (607)
.|+.+.|+ .+.|.+ +++++++|+..+.+.++......+...+... ....++|+++|
T Consensus 93 ~~~~~~~~-~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 93 VPNAETSK-EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp --CHHHHH-HHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCHHHHHH-HHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 44444443 344444 4578999999888888886555554443321 12357888887
No 230
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=89.95 E-value=0.12 Score=48.04 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=14.9
Q ss_pred eEEeeCCCEEEEEcCCCCcc
Q 007337 419 TLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 419 sl~i~~Ge~vaiVG~sGsGK 438 (607)
.++.++|+.++|+|++||||
T Consensus 23 ~m~~~~g~~i~l~G~~GsGK 42 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGK 42 (200)
T ss_dssp -----CCCEEEEECCTTSCH
T ss_pred hhcCCCCcEEEEECCCCCCH
Confidence 35668999999999999999
No 231
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.67 E-value=0.12 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=17.6
Q ss_pred cceEEeeCCCEEEEEcCCCCcc
Q 007337 417 GITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGK 438 (607)
++|++.++|..++|+|++||||
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGK 23 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGK 23 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSH
T ss_pred CcCcCCCCCCEEEEECCCCCCH
Confidence 5788899999999999999999
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.23 E-value=3.3 Score=40.94 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=18.0
Q ss_pred ceEEeeCCCEEEEEcCCCCcc
Q 007337 418 ITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 418 isl~i~~Ge~vaiVG~sGsGK 438 (607)
++++.+ |+.++++|++|+||
T Consensus 92 i~~~~~-~~vi~i~G~~G~GK 111 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGK 111 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSST
T ss_pred cccCCC-CeEEEEECCCCCCH
Confidence 677766 99999999999999
No 233
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.88 E-value=0.77 Score=46.82 Aligned_cols=16 Identities=44% Similarity=0.630 Sum_probs=14.2
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++..-+.|.||+|+||
T Consensus 115 ~~~~~vLl~GppGtGK 130 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGK 130 (357)
T ss_dssp SCCSEEEEESSTTSSH
T ss_pred CCCceEEEECCCCCCH
Confidence 4567899999999999
No 234
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.77 E-value=1 Score=44.45 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=34.3
Q ss_pred CCCEEEEeccCCCC--------CHHHHHHHHHHHHHhcCCCeEEEEccC----------chhhhhcCEEEEEe
Q 007337 518 NPRILLLDEATSAL--------DAESEYLVQDAMDSLMKGRTVLVIAHR----------LSTVQSADTVAVVS 572 (607)
Q Consensus 518 ~~~IllLDE~TSaL--------D~~te~~i~~~l~~~~~~~TvI~ItHr----------l~~l~~aD~Iivl~ 572 (607)
++.++++||.-.-. +.+....+.+.+.+...+..+|.+++. .....++|.++.+.
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~ 202 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFP 202 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEEC
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcC
Confidence 57899999987433 555556666777664344566666653 23445666666553
No 235
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.66 E-value=0.32 Score=48.41 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=17.1
Q ss_pred EEeeCCCEEEEEcCCCCcc
Q 007337 420 LKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGK 438 (607)
+.++++..+.|.||+|+||
T Consensus 44 ~~~~~~~~vLL~Gp~GtGK 62 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGK 62 (301)
T ss_dssp HCCCCCSEEEEECSSSSSH
T ss_pred cCCCCCceEEEECCCCcCH
Confidence 4578899999999999999
No 236
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.62 E-value=0.89 Score=56.33 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=23.7
Q ss_pred Ccccccce--EEeeCCCEEEEEcCCCCcc
Q 007337 412 HMVLKGIT--LKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 412 ~~vL~~is--l~i~~Ge~vaiVG~sGsGK 438 (607)
.+.|+++. .-+++|+.+.++|++||||
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGK 1094 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGK 1094 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCH
Confidence 35678876 5799999999999999999
No 237
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.36 E-value=0.35 Score=44.80 Aligned_cols=67 Identities=19% Similarity=0.150 Sum_probs=47.8
Q ss_pred HHHHHHHHHHh--cCCCEEEEeccCCCC--CHHHHHHHHHHHHHhcCCCeEEEEccCc---hhhhhcCEEEEEeC
Q 007337 506 KQRVAIARALM--MNPRILLLDEATSAL--DAESEYLVQDAMDSLMKGRTVLVIAHRL---STVQSADTVAVVSD 573 (607)
Q Consensus 506 kQRialARAll--~~~~IllLDE~TSaL--D~~te~~i~~~l~~~~~~~TvI~ItHrl---~~l~~aD~Iivl~~ 573 (607)
++.+.-||..+ .+.|++||||.+.++ +-.....+.+.|.+... ++-+++|=|. +.++.||.|--|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~-~~~vIlTGr~ap~~l~e~AD~VTem~~ 179 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG-HQTVIITGRGCHRDILDLADTVSELRP 179 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT-TCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC-CCEEEEECCCCcHHHHHhCcceeeecc
Confidence 45566677777 457999999999864 44466778888887544 4555555554 36789999988865
No 238
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.07 E-value=0.16 Score=48.51 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=15.9
Q ss_pred cccceEEee---CCCEEEEEcCCCCcc
Q 007337 415 LKGITLKLL---SGSKIALVGPSGGGK 438 (607)
Q Consensus 415 L~~isl~i~---~Ge~vaiVG~sGsGK 438 (607)
|.++|++++ +|..++|.|++||||
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGK 39 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGK 39 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCH
Confidence 556666665 999999999999999
No 239
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=87.69 E-value=0.071 Score=49.43 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=23.1
Q ss_pred EEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 403 WFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 403 sf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+|+|++. .++++++|++.+++ +|+++|++|+||
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGK 38 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGK 38 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSH
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCH
Confidence 4667754 36899999998887 689999999999
No 240
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=87.69 E-value=0.19 Score=52.84 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=26.0
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.|+++|+ .+|.+. . ++++.+|+.++|+|||||||
T Consensus 6 ~l~~~~~-~~~~~~------~--~~~~~~~~~~~i~G~nG~GK 39 (430)
T 1w1w_A 6 GLELSNF-KSYRGV------T--KVGFGESNFTSIIGPNGSGK 39 (430)
T ss_dssp EEEEESC-SSCCSE------E--EEECTTCSEEEEECSTTSSH
T ss_pred EEEEeCE-EEECCc------e--eEEecCCCEEEEECCCCCCH
Confidence 5788888 567421 1 25577899999999999999
No 241
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.30 E-value=0.58 Score=44.34 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=26.2
Q ss_pred HHHhcCCCEEEEeccCCC-CCHH-HHHHHHHHHHHhcCCCeEEEEcc
Q 007337 513 RALMMNPRILLLDEATSA-LDAE-SEYLVQDAMDSLMKGRTVLVIAH 557 (607)
Q Consensus 513 RAll~~~~IllLDE~TSa-LD~~-te~~i~~~l~~~~~~~TvI~ItH 557 (607)
.++.++|+++|+||+-.. .+.. ++..+++....+-.+.-++..+|
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 334468999999997642 3322 33344433333334666777776
No 242
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.12 E-value=2.1 Score=40.92 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=13.2
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++..-+.|.||+|+||
T Consensus 37 ~~~~~vll~G~~GtGK 52 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGK 52 (262)
T ss_dssp CCCCEEEEESCTTSSH
T ss_pred CCCceEEEECCCCCCH
Confidence 3445688999999999
No 243
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.70 E-value=1.4 Score=46.27 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCC----------CHHHHHHHHHHHHHhc-----CCCeEEEEccCchhhh
Q 007337 508 RVAIARALMMNPRILLLDEATSAL----------DAESEYLVQDAMDSLM-----KGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaL----------D~~te~~i~~~l~~~~-----~~~TvI~ItHrl~~l~ 563 (607)
|-...+|--..|.|+++||.-+-. |....+.+.+.|..+- .+..+|..|+|++.+.
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 444555556789999999986432 3334444444444331 2346888899998764
No 244
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.30 E-value=0.22 Score=44.83 Aligned_cols=16 Identities=38% Similarity=0.495 Sum_probs=14.9
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.+|+.++|+|++||||
T Consensus 6 ~~g~~i~l~G~~GsGK 21 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGK 21 (175)
T ss_dssp TTSEEEEEECSTTSCH
T ss_pred CCCcEEEEEcCCCCCH
Confidence 4689999999999999
No 245
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.72 E-value=0.34 Score=42.72 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=16.2
Q ss_pred cceEEeeCCCEEEEEcCCCCcc
Q 007337 417 GITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+.++++.+| ..+|+||+||||
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGK 36 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGK 36 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSH
T ss_pred ceEEEcCCC-eEEEECCCCCCH
Confidence 344555554 889999999999
No 246
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.63 E-value=0.74 Score=46.44 Aligned_cols=43 Identities=16% Similarity=0.340 Sum_probs=32.6
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 561 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~ 561 (607)
++.|+++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6678888888888888876555557777776653
No 247
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=85.50 E-value=4.1 Score=49.85 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=69.4
Q ss_pred eeCCCEEEEEcCCCCcceEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchHHHHhCCccccccccCCCCCC
Q 007337 422 LLSGSKIALVGPSGGGKISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKMANAHDFISNFPEKYQTFVGERGVRL 501 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGKi~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~~i~~lp~G~~T~ige~G~~L 501 (607)
+++|+.|.|.|++|+||..+..|=..-... -..+..|..- +.+.+++. ++..+++. +.+ ....+ .
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~-~g~~VlyiS~-Ees~~ql~--A~~lGvd~--~~L-----~i~~~--~-- 793 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR-EGKTCAFIDA-EHALDPIY--ARKLGVDI--DNL-----LCSQP--D-- 793 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEECT-TSCCCHHH--HHHTTCCG--GGC-----EEECC--S--
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH-cCCCeEEEec-cchHHHHH--HHHcCCCh--hhe-----EEecC--C--
Confidence 899999999999999992111110000000 0001222221 22222332 44444321 111 00111 1
Q ss_pred ChhHHHHHHHHHHHh--cCCCEEEEeccCCCCC-HH------------HHHHHHHHHHHh-----cCCCeEEEEccCch-
Q 007337 502 SGGQKQRVAIARALM--MNPRILLLDEATSALD-AE------------SEYLVQDAMDSL-----MKGRTVLVIAHRLS- 560 (607)
Q Consensus 502 SGGQkQRialARAll--~~~~IllLDE~TSaLD-~~------------te~~i~~~l~~~-----~~~~TvI~ItHrl~- 560 (607)
+. .|-++.+|.+. .+|+++++|+.++-.. ++ .++.+.+.++++ ..++++|+++|--.
T Consensus 794 ~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~ 871 (1706)
T 3cmw_A 794 TG--EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMK 871 (1706)
T ss_dssp SH--HHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEEC
T ss_pred cH--HHHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 22 36667777665 4799999999887652 11 123344444332 13789999888211
Q ss_pred ---------------hh-hhcCEEEEEeCCE
Q 007337 561 ---------------TV-QSADTVAVVSDGE 575 (607)
Q Consensus 561 ---------------~l-~~aD~Iivl~~G~ 575 (607)
.+ ..||.++.+..++
T Consensus 872 ~g~~~Gdp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 872 IGVMFGNPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp TTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred cccccCCccccCCcchhhheeeEEEEEEecc
Confidence 12 3588888886443
No 248
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.87 E-value=0.22 Score=50.64 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=24.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.+++++++++++|..++|+|++|+||
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GK 69 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGK 69 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCH
Confidence 47889999999999999999999999
No 249
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=84.73 E-value=0.31 Score=46.32 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=17.7
Q ss_pred eEEeeCCCEEEEEcCCCCcc
Q 007337 419 TLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 419 sl~i~~Ge~vaiVG~sGsGK 438 (607)
+.+.++|+.++|+|++||||
T Consensus 14 ~~~~~~g~~i~i~G~~GsGK 33 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGK 33 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCH
T ss_pred cCCCCCceEEEEECCCCCCH
Confidence 44568999999999999999
No 250
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=84.70 E-value=0.028 Score=53.74 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=24.4
Q ss_pred cEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 396 EVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 396 ~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.|+++|++..|+ . ++++++ +.++|+|||||||
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGK 40 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGK 40 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHH
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCH
Confidence 578888765442 1 466666 8999999999999
No 251
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=84.33 E-value=0.49 Score=43.27 Aligned_cols=37 Identities=22% Similarity=0.195 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 007337 507 QRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDS 545 (607)
Q Consensus 507 QRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~ 545 (607)
+...+||++.++|+++++| |||+|.++...+.+.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999988888887765
No 252
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=84.33 E-value=0.35 Score=43.34 Aligned_cols=15 Identities=53% Similarity=0.855 Sum_probs=13.9
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
.|+.++|+|++||||
T Consensus 3 ~~~~i~l~G~~GsGK 17 (173)
T 1kag_A 3 EKRNIFLVGPMGAGK 17 (173)
T ss_dssp CCCCEEEECCTTSCH
T ss_pred CCCeEEEECCCCCCH
Confidence 478999999999999
No 253
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.30 E-value=0.35 Score=44.97 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=15.8
Q ss_pred eeCCCEEEEEcCCCCcc
Q 007337 422 LLSGSKIALVGPSGGGK 438 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK 438 (607)
..+|..++|+|+|||||
T Consensus 9 ~~~~~~i~l~G~sGsGK 25 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGK 25 (204)
T ss_dssp CCCCCCEEEECCTTSCH
T ss_pred cccCCEEEEECCCCCCH
Confidence 46899999999999999
No 254
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.69 E-value=4.6 Score=36.85 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=29.5
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~ 560 (607)
.++.++++||+-. +++.....+.+.+.+...+..+|++|++..
T Consensus 101 ~~~~vliiDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEADA-LTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGGG-SCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChhh-cCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 4678999999754 566666677777766544455666666654
No 255
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=83.64 E-value=0.33 Score=45.07 Aligned_cols=18 Identities=28% Similarity=0.283 Sum_probs=16.3
Q ss_pred EeeCCCEEEEEcCCCCcc
Q 007337 421 KLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK 438 (607)
..++|++++|+|++||||
T Consensus 18 ~~~~~~~i~i~G~~GsGK 35 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGK 35 (201)
T ss_dssp CCSSSEEEEEEECTTSSH
T ss_pred ccCCCeEEEEECCCCCCH
Confidence 357899999999999999
No 256
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=83.29 E-value=0.4 Score=43.82 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=12.4
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcc
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+++++|++.++. +|+++|++|+||
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGK 36 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGK 36 (190)
T ss_dssp -----------C-EEEEEESTTSSH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCH
Confidence 678999988776 899999999999
No 257
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=82.63 E-value=0.24 Score=50.81 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=49.1
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCC-CeEEEEccCchhhhhcCEEEEEeCC
Q 007337 502 SGGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKG-RTVLVIAHRLSTVQSADTVAVVSDG 574 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~-~TvI~ItHrl~~l~~aD~Iivl~~G 574 (607)
+++..+|-.|++++-.+|+.+++||++.+ + +.+.|+.+..+ .|++..+|..+....+||+..|..|
T Consensus 236 ~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~----~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 236 NAPVTAATLLRSCLRMKPTRILLAELRGG---E----AYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp ---CCHHHHHHHHTTSCCSEEEESCCCST---H----HHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred ccccCHHHHHHHHHhcCCCEEEEcCchHH---H----HHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 56778999999999999999999999862 2 23344443333 5789999999888888888888765
No 258
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.56 E-value=4.2 Score=50.48 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhc--CCCEEEEeccCCCCC-HH------------HHHHHHHHHHHh-----cCCCeEEEEccCchh----
Q 007337 506 KQRVAIARALMM--NPRILLLDEATSALD-AE------------SEYLVQDAMDSL-----MKGRTVLVIAHRLST---- 561 (607)
Q Consensus 506 kQRialARAll~--~~~IllLDE~TSaLD-~~------------te~~i~~~l~~~-----~~~~TvI~ItHrl~~---- 561 (607)
.|-++++|.+.+ +|+++++|..++-.. ++ ..+.+.+.++.+ ..++++|+++|--..
T Consensus 447 e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~ 526 (2050)
T 3cmu_A 447 EQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 526 (2050)
T ss_dssp HHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCC
T ss_pred HHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccc
Confidence 356778887763 699999999887652 11 123344555544 247888888773211
Q ss_pred ------------h-hhcCEEEEEeCCE
Q 007337 562 ------------V-QSADTVAVVSDGE 575 (607)
Q Consensus 562 ------------l-~~aD~Iivl~~G~ 575 (607)
+ ..||.++.+....
T Consensus 527 ~g~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 527 FGNPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp SSCCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred cCCCcCCCCcchhhhhCCEEEEEEecc
Confidence 2 3588888876543
No 259
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.17 E-value=1.4 Score=44.68 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=23.5
Q ss_pred CCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEcc
Q 007337 519 PRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAH 557 (607)
Q Consensus 519 ~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItH 557 (607)
|.|+++||+- .++.+....+.+.+.+. ....+++.+.
T Consensus 190 ~~vl~IDEi~-~l~~~~~~~L~~~le~~-~~~~~ii~t~ 226 (368)
T 3uk6_A 190 PGVLFIDEVH-MLDIESFSFLNRALESD-MAPVLIMATN 226 (368)
T ss_dssp BCEEEEESGG-GSBHHHHHHHHHHTTCT-TCCEEEEEES
T ss_pred CceEEEhhcc-ccChHHHHHHHHHhhCc-CCCeeeeecc
Confidence 6799999996 45666666666555443 2345555555
No 260
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=81.36 E-value=2.7 Score=36.35 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=27.3
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR 558 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHr 558 (607)
+..++++||.- .+++.....+.+.+.....+..+|..|++
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 56799999985 57888777777777544334445555554
No 261
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=80.99 E-value=6.1 Score=48.36 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=41.3
Q ss_pred HHHHHHHHHh--cCCCEEEEeccCCCCC-HH------------HHHHHHHHHHHhc-----CCCeEEEEccCch------
Q 007337 507 QRVAIARALM--MNPRILLLDEATSALD-AE------------SEYLVQDAMDSLM-----KGRTVLVIAHRLS------ 560 (607)
Q Consensus 507 QRialARAll--~~~~IllLDE~TSaLD-~~------------te~~i~~~l~~~~-----~~~TvI~ItHrl~------ 560 (607)
|-+.++|.+. .+|+++++|..++-.. ++ .++.+.+.++++. .++|+|++.|--.
T Consensus 448 ~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~f 527 (1706)
T 3cmw_A 448 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 527 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeeccccccccc
Confidence 3445667665 4699999999887664 11 1233344444331 3789999877421
Q ss_pred ----------hh-hhcCEEEEEeCC
Q 007337 561 ----------TV-QSADTVAVVSDG 574 (607)
Q Consensus 561 ----------~l-~~aD~Iivl~~G 574 (607)
.+ ..||.++.+...
T Consensus 528 g~~~~p~gg~ale~~ADv~L~L~R~ 552 (1706)
T 3cmw_A 528 GNPETTTGGNALKFYASVRLDIRRI 552 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEE
T ss_pred CCCccCCCCcceeeeCCEEEEEEec
Confidence 12 468888887543
No 262
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.66 E-value=1.4 Score=44.19 Aligned_cols=17 Identities=41% Similarity=0.558 Sum_probs=14.5
Q ss_pred eeCCCEEEEEcCCCCcc
Q 007337 422 LLSGSKIALVGPSGGGK 438 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK 438 (607)
.++..-+.|.||+|+||
T Consensus 42 ~~~~~~iLL~GppGtGK 58 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGK 58 (322)
T ss_dssp CCCCSEEEEESSSSSCH
T ss_pred CCCCceEEEECCCCccH
Confidence 34667899999999999
No 263
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=80.32 E-value=3.6 Score=41.78 Aligned_cols=61 Identities=16% Similarity=0.202 Sum_probs=33.1
Q ss_pred HHHHHhcCCCEEEEeccCCCCCH------HHHHHHHHH----HHHh---cCCCeEEEEccCchh-----hhhcCEEEEE
Q 007337 511 IARALMMNPRILLLDEATSALDA------ESEYLVQDA----MDSL---MKGRTVLVIAHRLST-----VQSADTVAVV 571 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSaLD~------~te~~i~~~----l~~~---~~~~TvI~ItHrl~~-----l~~aD~Iivl 571 (607)
+..|-..+|.|+++||.-+-... .....+.+. +... ..+..+|..|++... .+++|+++.+
T Consensus 136 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 214 (355)
T 2qp9_X 136 FAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYI 214 (355)
T ss_dssp HHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEEC
T ss_pred HHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEe
Confidence 34444568899999998754322 122233333 3322 123345556777743 4578887765
No 264
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=80.13 E-value=6.4 Score=41.11 Aligned_cols=13 Identities=54% Similarity=0.779 Sum_probs=12.3
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
..++|+|++|+||
T Consensus 100 ~vI~ivG~~GvGK 112 (432)
T 2v3c_C 100 NVILLVGIQGSGK 112 (432)
T ss_dssp CCEEEECCSSSST
T ss_pred eEEEEECCCCCCH
Confidence 6899999999999
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=79.87 E-value=3.6 Score=36.60 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=11.8
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
..|.|+|++||||
T Consensus 3 ~~I~i~G~~GsGK 15 (181)
T 1ly1_A 3 KIILTIGCPGSGK 15 (181)
T ss_dssp EEEEEECCTTSSH
T ss_pred eEEEEecCCCCCH
Confidence 4689999999999
No 266
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.82 E-value=2.9 Score=43.75 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.8
Q ss_pred EeeCCCEEEEEcCCCCcc
Q 007337 421 KLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK 438 (607)
-+++-.-|.+.||+|+||
T Consensus 211 g~~~prGvLLyGPPGTGK 228 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGK 228 (434)
T ss_dssp CCCCCCEEEEESCTTSSH
T ss_pred CCCCCCeeEEECcCCCCH
Confidence 466778899999999999
No 267
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=79.79 E-value=0.63 Score=42.03 Aligned_cols=16 Identities=44% Similarity=0.756 Sum_probs=14.5
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++|+.++|+|++||||
T Consensus 3 ~~g~~i~l~G~~GsGK 18 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGK 18 (179)
T ss_dssp -CCEEEEEECCTTSSH
T ss_pred CCCcEEEEECCCCCCH
Confidence 4799999999999999
No 268
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.66 E-value=4.9 Score=40.61 Aligned_cols=43 Identities=16% Similarity=0.066 Sum_probs=24.3
Q ss_pred CCCEEEEeccCCCCCHH-HHHHHHHHHHHh-----cCCCeEEEEccCch
Q 007337 518 NPRILLLDEATSALDAE-SEYLVQDAMDSL-----MKGRTVLVIAHRLS 560 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~-te~~i~~~l~~~-----~~~~TvI~ItHrl~ 560 (607)
+|.++++||+-...+.. ....+.+.++.. ..+.++|.+|++..
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 36699999987654332 333343333322 12457888898873
No 269
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=79.41 E-value=1.9 Score=41.29 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHh---cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC----CCeEEEEccCchh
Q 007337 502 SGGQKQRVAIARALM---MNPRILLLDEATSALDAESEYLVQDAMDSLMK----GRTVLVIAHRLST 561 (607)
Q Consensus 502 SGGQkQRialARAll---~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~----~~TvI~ItHrl~~ 561 (607)
+.|++.+-.+.|+++ ++++++|+--..+.++.. +..+.+.+.+.+. ++++|+++|..+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHH-HHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 445666777888875 888887765444455443 4444555555432 6799999997654
No 270
>2i9o_A MHB8A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=79.24 E-value=1.2 Score=27.15 Aligned_cols=17 Identities=53% Similarity=1.177 Sum_probs=11.9
Q ss_pred CCCccCCCCCCCCCCCC
Q 007337 4 FSGMHGFGGGGGGGGGE 20 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (607)
+.|.+-++|||||||..
T Consensus 6 yngityeggggggggsa 22 (37)
T 2i9o_A 6 YNGITYEGGGGGGGGSA 22 (37)
T ss_dssp SSSCCCCCSCCCCSCSS
T ss_pred ECCEEeecCCCCCcchH
Confidence 46888788777776653
No 271
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=78.96 E-value=0.48 Score=46.91 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=12.4
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+...+.+.||+|+||
T Consensus 35 ~p~~lLl~GppGtGK 49 (293)
T 3t15_A 35 VPLILGIWGGKGQGK 49 (293)
T ss_dssp CCSEEEEEECTTSCH
T ss_pred CCeEEEEECCCCCCH
Confidence 345688899999999
No 272
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=78.87 E-value=1.7 Score=42.08 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHhcCCCEEEEeccCCC-----CCHHHHHHHHHHHHHhcC------CCe-EEEEccCchhhh
Q 007337 511 IARALMMNPRILLLDEATSA-----LDAESEYLVQDAMDSLMK------GRT-VLVIAHRLSTVQ 563 (607)
Q Consensus 511 lARAll~~~~IllLDE~TSa-----LD~~te~~i~~~l~~~~~------~~T-vI~ItHrl~~l~ 563 (607)
+.+|...++.++++||.-.- .++.....+.+.|..+.. .++ +|..|++.+.+.
T Consensus 117 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~ 181 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQ 181 (272)
T ss_dssp HHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHH
T ss_pred HHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcc
Confidence 33444467899999996331 122233455566655433 123 455577765443
No 273
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.85 E-value=6 Score=39.02 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=21.9
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSL 546 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~ 546 (607)
.++.++++||.- .++......+.+.+.+.
T Consensus 89 ~~~~~l~lDEi~-~l~~~~~~~L~~~l~~~ 117 (324)
T 1hqc_A 89 EEGDILFIDEIH-RLSRQAEEHLYPAMEDF 117 (324)
T ss_dssp CTTCEEEETTTT-SCCHHHHHHHHHHHHHS
T ss_pred cCCCEEEEECCc-ccccchHHHHHHHHHhh
Confidence 468899999985 56677777777777653
No 274
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.84 E-value=3.2 Score=42.90 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=35.5
Q ss_pred HHHhcCCCEEEEeccCCCC----------CHHHHHHHHHHHHHh---cC--CCeEEEEccCchhhh-------hcCEEEE
Q 007337 513 RALMMNPRILLLDEATSAL----------DAESEYLVQDAMDSL---MK--GRTVLVIAHRLSTVQ-------SADTVAV 570 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaL----------D~~te~~i~~~l~~~---~~--~~TvI~ItHrl~~l~-------~aD~Iiv 570 (607)
+|--..|.|+++||.-|-. |.+..+.+.+.|..+ .. +-.+|..|+|++.+. +.|+.+-
T Consensus 236 ~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~ 315 (405)
T 4b4t_J 236 MAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIE 315 (405)
T ss_dssp HHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEE
T ss_pred HHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEE
Confidence 3334678999999976543 223344444444333 12 336788899997653 5677766
Q ss_pred E
Q 007337 571 V 571 (607)
Q Consensus 571 l 571 (607)
+
T Consensus 316 i 316 (405)
T 4b4t_J 316 F 316 (405)
T ss_dssp C
T ss_pred c
Confidence 5
No 275
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.40 E-value=3.9 Score=35.29 Aligned_cols=40 Identities=5% Similarity=0.034 Sum_probs=25.7
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCeEEEEccC
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMK-GRTVLVIAHR 558 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~-~~TvI~ItHr 558 (607)
+..++++||.- .++......+.+.+.+..+ +..+|..|++
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 45799999975 5677777777777776422 2334444443
No 276
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=78.20 E-value=5.2 Score=41.95 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHhcCCCEEEEeccCCCC------CHHHHHHHHHHHHHhc-------CCCeEEEEccCchh-----hhhcCEEEEE
Q 007337 514 ALMMNPRILLLDEATSAL------DAESEYLVQDAMDSLM-------KGRTVLVIAHRLST-----VQSADTVAVV 571 (607)
Q Consensus 514 All~~~~IllLDE~TSaL------D~~te~~i~~~l~~~~-------~~~TvI~ItHrl~~-----l~~aD~Iivl 571 (607)
|-..+|.|+++||.-+-. +......+.+.+...+ .+..+|..|+++.. ++++|+++.+
T Consensus 223 a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 298 (444)
T 2zan_A 223 ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 298 (444)
T ss_dssp HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEEC
T ss_pred HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEe
Confidence 334688999999987542 2233344444443332 23456667888654 4578877665
No 277
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.35 E-value=5.3 Score=41.67 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=30.2
Q ss_pred HHHHHhcCCCEEEEeccCC----------CCCHHHHHHHHHHH---HHhcC--CCeEEEEccCchhhh
Q 007337 511 IARALMMNPRILLLDEATS----------ALDAESEYLVQDAM---DSLMK--GRTVLVIAHRLSTVQ 563 (607)
Q Consensus 511 lARAll~~~~IllLDE~TS----------aLD~~te~~i~~~l---~~~~~--~~TvI~ItHrl~~l~ 563 (607)
..+|--..|.|+++||.-+ .-|.+..+.+.+.| ..... +..+|..|+|++.+.
T Consensus 258 F~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD 325 (428)
T 4b4t_K 258 FRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD 325 (428)
T ss_dssp HHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred HHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence 3344446788999999732 22334444444433 33222 336778899998654
No 278
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=76.96 E-value=0.56 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcc
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.+++++|++.+| ..+|+|++||||
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGK 73 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGK 73 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCH
Confidence 467889999999 999999999999
No 279
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=76.93 E-value=0.35 Score=49.15 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=24.0
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCcc
Q 007337 413 MVLKGITLKLLSGSK--IALVGPSGGGK 438 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~--vaiVG~sGsGK 438 (607)
.+++++++.+++|+. ++|+|++||||
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GK 37 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGK 37 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcH
Confidence 478889999999999 99999999999
No 280
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=76.38 E-value=0.67 Score=47.15 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~ 560 (607)
++.++++||+- .++......+.+.+.+...+..+|++|++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 46899999975 4677777777777766544455666777664
No 281
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=76.15 E-value=9.4 Score=39.59 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=15.9
Q ss_pred EEeeCCCEEEEEcCCCCcc
Q 007337 420 LKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGK 438 (607)
+.=++...|.|+|++||||
T Consensus 253 ~~~~~~~lIil~G~pGSGK 271 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGK 271 (416)
T ss_dssp SCCSSCCEEEEESCTTSSH
T ss_pred cCCCCCEEEEEECCCCCCH
Confidence 3345678999999999999
No 282
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=75.65 E-value=0.033 Score=60.25 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=52.2
Q ss_pred HHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhh---hhcCEEEEEeCCEEeEe-cChhHHh
Q 007337 513 RALMMNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTV---QSADTVAVVSDGEIVES-GTHEELL 586 (607)
Q Consensus 513 RAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l---~~aD~Iivl~~G~Ive~-G~~~eL~ 586 (607)
|||--| ||||+ ||.|++|| ++..++..|.+. -++|+.+|+|-+.++ +-+|+|..+..+.++.. ++.+++.
T Consensus 28 ralt~d-dvlLm-p~~s~~~p-~~v~l~~eLt~~-~~~~iP~vsa~md~~t~~~la~~ia~~gg~gii~~~~t~e~~~ 101 (514)
T 1jcn_A 28 DDLTYN-DFLIL-PGFIDFIA-DEVDLTSALTRK-ITLKTPLISSPMDTVTEADMAIAMALMGGIGFIHHNCTPEFQA 101 (514)
T ss_dssp SCCCGG-GEEEC-CCCCCSCG-GGCBCCEESSSS-CEESSCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHH
T ss_pred cccccC-cEEec-cCccCCCc-ceeEEEeeccCC-eeEeceEEEEehhhhhhhhHHHHHHhcCCeeEEecCCCHHHHH
Confidence 888889 99999 99999999 554444333222 146789999988875 56788888888888765 4777764
No 283
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=75.55 E-value=0.75 Score=52.46 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.6
Q ss_pred cceEEeeCCCEEEEEcCCCCcc
Q 007337 417 GITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGK 438 (607)
..++.+++++.+.++||+|+||
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGK 524 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGK 524 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSH
T ss_pred HHhcCCCCCceeEEECCCCCCH
Confidence 3467789999999999999999
No 284
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=75.37 E-value=6.1 Score=42.00 Aligned_cols=17 Identities=41% Similarity=0.644 Sum_probs=14.9
Q ss_pred eeCCCEEEEEcCCCCcc
Q 007337 422 LLSGSKIALVGPSGGGK 438 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK 438 (607)
+++..-+.|.||+|+||
T Consensus 235 ~~~~~~vLL~GppGtGK 251 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGK 251 (489)
T ss_dssp CCCCCEEEEECSTTSSH
T ss_pred CCCCCcEEEECcCCCCH
Confidence 46667899999999999
No 285
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=75.07 E-value=0.93 Score=40.55 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.6
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++|.+|+|||++|+||
T Consensus 2 ~~~~ki~ivG~~g~GK 17 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGK 17 (172)
T ss_dssp --CEEEEEEESTTSSH
T ss_pred CCCCEEEEECCCCCCH
Confidence 4788999999999999
No 286
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.18 E-value=6.2 Score=41.02 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCC----------CHHHHHHHHHHHHHh---c--CCCeEEEEccCchhhhh
Q 007337 508 RVAIARALMMNPRILLLDEATSAL----------DAESEYLVQDAMDSL---M--KGRTVLVIAHRLSTVQS 564 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaL----------D~~te~~i~~~l~~~---~--~~~TvI~ItHrl~~l~~ 564 (607)
|-....|--..|.|+++||.-+-. |.+..+.+.+.|..+ - .+..+|..|+|++.+..
T Consensus 265 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDp 336 (437)
T 4b4t_I 265 RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDP 336 (437)
T ss_dssp HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCT
T ss_pred HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCH
Confidence 333444444678999999976543 223344444444332 1 23367888999987753
No 287
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=73.94 E-value=1.4 Score=40.87 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=16.0
Q ss_pred cceEEeeCCCEEEEEcCCCCcc
Q 007337 417 GITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+.++++.+ ...+|+||+||||
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGK 36 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGK 36 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSH
T ss_pred ceEEEeCC-CeEEEEcCCCCCH
Confidence 34455555 4899999999999
No 288
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.38 E-value=5.2 Score=41.97 Aligned_cols=64 Identities=17% Similarity=0.170 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCC----------HHHHHHHHHHHHHhc-----CCCeEEEEccCchhhh-------hc
Q 007337 508 RVAIARALMMNPRILLLDEATSALD----------AESEYLVQDAMDSLM-----KGRTVLVIAHRLSTVQ-------SA 565 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD----------~~te~~i~~~l~~~~-----~~~TvI~ItHrl~~l~-------~a 565 (607)
|-...+|--+.|.|+++||.-+-.. ....+.+.+.|.++- .+..+|..|+|++.+. +.
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRF 371 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRI 371 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTC
T ss_pred HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccc
Confidence 4455556567899999999876542 223334444444331 1235677799987653 57
Q ss_pred CEEEEE
Q 007337 566 DTVAVV 571 (607)
Q Consensus 566 D~Iivl 571 (607)
|+.+.+
T Consensus 372 D~~I~i 377 (467)
T 4b4t_H 372 DRKVEF 377 (467)
T ss_dssp CEEECC
T ss_pred cEEEEe
Confidence 777665
No 289
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=73.30 E-value=1.1 Score=41.77 Aligned_cols=19 Identities=42% Similarity=0.494 Sum_probs=17.4
Q ss_pred EEeeCCCEEEEEcCCCCcc
Q 007337 420 LKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGK 438 (607)
+.+++|..++|+|++||||
T Consensus 20 ~~~~~~~~i~~~G~~GsGK 38 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGK 38 (211)
T ss_dssp HHTSSCEEEEEECSTTSSH
T ss_pred ccCCCCCEEEEECCCCCCH
Confidence 5578999999999999999
No 290
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=73.14 E-value=1 Score=40.67 Aligned_cols=16 Identities=38% Similarity=0.812 Sum_probs=14.1
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.+|..++|+|++||||
T Consensus 2 ~~g~~I~l~G~~GsGK 17 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGK 17 (186)
T ss_dssp -CEEEEEEECCTTSCH
T ss_pred CCCeEEEEECCCCCCH
Confidence 3678999999999999
No 291
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=72.94 E-value=12 Score=37.17 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=34.5
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhcC------------------CCeEEEEccCchh-----hhhcCEEEEE
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLMK------------------GRTVLVIAHRLST-----VQSADTVAVV 571 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~------------------~~TvI~ItHrl~~-----l~~aD~Iivl 571 (607)
..++.++++||.-. +++.....+.+.+.+... .-.+|..|++... ..++|.++.+
T Consensus 104 ~~~~~vl~lDEi~~-l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l 181 (338)
T 3pfi_A 104 LSEGDILFIDEIHR-LSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRL 181 (338)
T ss_dssp CCTTCEEEEETGGG-CCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred ccCCCEEEEechhh-cCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeC
Confidence 35789999999874 456666666666654210 1357777887553 3355555554
No 292
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.79 E-value=1.2 Score=40.81 Aligned_cols=12 Identities=58% Similarity=1.027 Sum_probs=10.8
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.|.|+|||||||
T Consensus 3 pIVi~GPSG~GK 14 (186)
T 1ex7_A 3 PIVISGPSGTGK 14 (186)
T ss_dssp CEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 378999999999
No 293
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=72.65 E-value=0.87 Score=49.36 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=22.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.+++++++++ +|+.+.|+||+|+||
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGK 121 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGK 121 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSH
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCH
Confidence 4678888888 899999999999999
No 294
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=72.54 E-value=1.5 Score=39.15 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=13.5
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
.|..|.|+|+|||||
T Consensus 2 ~~~~i~l~G~~GsGK 16 (178)
T 1qhx_A 2 TTRMIILNGGSSAGK 16 (178)
T ss_dssp CCCEEEEECCTTSSH
T ss_pred CceEEEEECCCCCCH
Confidence 367899999999999
No 295
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.53 E-value=1.9 Score=43.86 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCC-EEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch
Q 007337 509 VAIARALMMNPR-ILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560 (607)
Q Consensus 509 ialARAll~~~~-IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~ 560 (607)
+.-....+++.+ ++++||.-...+......+...+.+...+..+|++|++..
T Consensus 123 ~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 123 IDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 333333444433 9999996443211111221444444434567888888763
No 296
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=72.44 E-value=1.9 Score=39.38 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL 546 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~ 546 (607)
...||++.++|++.++| |||+|..+-..+.+.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 46699999999999999 9999999777777776543
No 297
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=72.26 E-value=1.4 Score=44.43 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=15.7
Q ss_pred cceEEeeCCCEEEEEcCCCCcc
Q 007337 417 GITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+..+++.+| ..+|+||+||||
T Consensus 16 ~~~i~f~~~-~~~i~G~NGsGK 36 (339)
T 3qkt_A 16 DTVVEFKEG-INLIIGQNGSGK 36 (339)
T ss_dssp EEEEECCSE-EEEEECCTTSSH
T ss_pred CeEEcCCCC-eEEEECCCCCCH
Confidence 334455554 889999999999
No 298
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=71.26 E-value=1.7 Score=39.26 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=13.2
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
++..+.|+|++||||
T Consensus 4 ~~~~i~l~G~~GsGK 18 (185)
T 3trf_A 4 NLTNIYLIGLMGAGK 18 (185)
T ss_dssp -CCEEEEECSTTSSH
T ss_pred CCCEEEEECCCCCCH
Confidence 467899999999999
No 299
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=71.22 E-value=10 Score=38.76 Aligned_cols=16 Identities=38% Similarity=0.740 Sum_probs=14.2
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.++.-+.|.||+|+||
T Consensus 146 ~~~~~vLL~GppGtGK 161 (389)
T 3vfd_A 146 APARGLLLFGPPGNGK 161 (389)
T ss_dssp CCCSEEEEESSTTSCH
T ss_pred CCCceEEEECCCCCCH
Confidence 3567899999999999
No 300
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=70.49 E-value=1.3 Score=40.18 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=16.0
Q ss_pred EeeCCCEEEEEcCCCCcc
Q 007337 421 KLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK 438 (607)
..++|..+.|+|++||||
T Consensus 9 ~~~~~~~i~l~G~~GsGK 26 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGK 26 (186)
T ss_dssp CCSCCEEEEEECCTTSSH
T ss_pred ccCCCcEEEEEcCCCCCH
Confidence 345889999999999999
No 301
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=70.36 E-value=0.95 Score=49.06 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=17.5
Q ss_pred EEeeCCCEEEEEcCCCCcc
Q 007337 420 LKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 420 l~i~~Ge~vaiVG~sGsGK 438 (607)
..+++|+.++|+|+|||||
T Consensus 364 ~~~~~G~iI~LiG~sGSGK 382 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGK 382 (552)
T ss_dssp CGGGSCEEEEEEESSCHHH
T ss_pred cccccceEEEEECCCCChH
Confidence 3578999999999999999
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=70.27 E-value=1.8 Score=39.10 Aligned_cols=15 Identities=20% Similarity=0.426 Sum_probs=13.3
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+|..+.|+|++||||
T Consensus 2 ~~~~I~i~G~~GsGK 16 (192)
T 1kht_A 2 KNKVVVVTGVPGVGS 16 (192)
T ss_dssp -CCEEEEECCTTSCH
T ss_pred CCeEEEEECCCCCCH
Confidence 367899999999999
No 303
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=69.88 E-value=0.34 Score=49.67 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=25.5
Q ss_pred CCcEEEEeEEEECCCCCCCcccccceEEeeCCCEEEEEcCCCCcc
Q 007337 394 DGEVELDDVWFAYPSRPNHMVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 394 ~~~I~~~~vsf~y~~~~~~~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.+.|.++|++..|.. ..++++++|+| +|||++|+||
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GK 50 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGK 50 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCH
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCH
Confidence 356889999888853 35788999876 9999999999
No 304
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=69.58 E-value=1.1 Score=43.01 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=15.8
Q ss_pred EeeCCCEEEEEcCCCCcc
Q 007337 421 KLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK 438 (607)
..+++..+.|+|++||||
T Consensus 28 ~~~~~~~i~l~G~~GsGK 45 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGK 45 (253)
T ss_dssp CCSSCEEEEEESCGGGTT
T ss_pred cccCCeEEEEECCCCCCH
Confidence 456778999999999999
No 305
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=69.37 E-value=1.9 Score=40.80 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.0
Q ss_pred eeCCCEEEEEcCCCCcc
Q 007337 422 LLSGSKIALVGPSGGGK 438 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK 438 (607)
-++|.+++|+|++||||
T Consensus 13 ~~~~~~i~i~G~~gsGK 29 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGK 29 (236)
T ss_dssp -CCCCEEEEECSSCSSH
T ss_pred ccCCcEEEEECCCCCCH
Confidence 45789999999999999
No 306
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=69.06 E-value=2.1 Score=42.73 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.8
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
..+++..+.+ .|.-++|+|+||+||
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GK 157 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGK 157 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCH
Confidence 4677877777 889999999999999
No 307
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=69.00 E-value=18 Score=35.51 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=31.1
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchh
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLST 561 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~ 561 (607)
+++++++||+-.--..+....+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 78999999985432155666677777766556778888887653
No 308
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=68.72 E-value=1.8 Score=41.22 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=12.8
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+...++|+||+||||
T Consensus 8 ~~~~i~i~G~~GsGK 22 (233)
T 3r20_A 8 GSLVVAVDGPAGTGK 22 (233)
T ss_dssp -CCEEEEECCTTSSH
T ss_pred CCeEEEEECCCCCCH
Confidence 345899999999999
No 309
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=68.51 E-value=2.1 Score=39.17 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=14.3
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+|..|+|+|++||||
T Consensus 3 ~~~~I~l~G~~GsGK 17 (204)
T 2v54_A 3 RGALIVFEGLDKSGK 17 (204)
T ss_dssp CCCEEEEECCTTSSH
T ss_pred CCcEEEEEcCCCCCH
Confidence 688999999999999
No 310
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.83 E-value=14 Score=41.67 Aligned_cols=28 Identities=11% Similarity=0.205 Sum_probs=21.0
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHH
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDS 545 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~ 545 (607)
++..+++|||.-. +++.....+.+.+.+
T Consensus 578 ~~~~vl~lDEi~~-~~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 578 KPYSVVLLDAIEK-AHPDVFNILLQVLED 605 (758)
T ss_dssp CSSSEEEEECGGG-SCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHhcc
Confidence 3567999999954 477777777777765
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=67.78 E-value=1.4 Score=39.64 Aligned_cols=16 Identities=38% Similarity=0.511 Sum_probs=14.5
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.++..|.|+|++||||
T Consensus 9 ~~~~~i~i~G~~GsGK 24 (180)
T 3iij_A 9 MLLPNILLTGTPGVGK 24 (180)
T ss_dssp CCCCCEEEECSTTSSH
T ss_pred ccCCeEEEEeCCCCCH
Confidence 4678899999999999
No 312
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=67.68 E-value=4 Score=46.76 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHHhc-CCCEEEEeccCCCCCHHHHHHHHHHHH
Q 007337 512 ARALMM-NPRILLLDEATSALDAESEYLVQDAMD 544 (607)
Q Consensus 512 ARAll~-~~~IllLDE~TSaLD~~te~~i~~~l~ 544 (607)
..++-+ ...+++|||+- .+++.....+.+.+.
T Consensus 653 ~~~~~~~~~~vl~lDEi~-~l~~~~~~~Ll~~l~ 685 (854)
T 1qvr_A 653 TEAVRRRPYSVILFDEIE-KAHPDVFNILLQILD 685 (854)
T ss_dssp HHHHHHCSSEEEEESSGG-GSCHHHHHHHHHHHT
T ss_pred HHHHHhCCCeEEEEeccc-ccCHHHHHHHHHHhc
Confidence 344443 34799999995 467766666666664
No 313
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=67.53 E-value=6.9 Score=38.63 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=27.8
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc-----------CCCeEEEEccCc
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLM-----------KGRTVLVIAHRL 559 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~-----------~~~TvI~ItHrl 559 (607)
+..+++|||.- .++......+.+.+.+.. .+..+|..|++.
T Consensus 96 ~~g~L~LDEi~-~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 96 DGGTLFLDEIG-DISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp TTSEEEEESCT-TCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC
T ss_pred CCCEEEEeccc-cCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc
Confidence 46899999975 456666677777776532 235677777764
No 314
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=67.17 E-value=12 Score=34.64 Aligned_cols=15 Identities=33% Similarity=0.729 Sum_probs=13.7
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+|..|.|+|++||||
T Consensus 4 ~~~~I~l~G~~GsGK 18 (217)
T 3be4_A 4 KKHNLILIGAPGSGK 18 (217)
T ss_dssp GCCEEEEEECTTSSH
T ss_pred CceEEEEECCCCCCH
Confidence 567899999999999
No 315
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=67.14 E-value=2.2 Score=37.72 Aligned_cols=13 Identities=38% Similarity=0.345 Sum_probs=11.8
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
..|+|+|++||||
T Consensus 2 ~~i~l~G~~GsGK 14 (173)
T 3kb2_A 2 TLIILEGPDCCFK 14 (173)
T ss_dssp CEEEEECSSSSSH
T ss_pred eEEEEECCCCCCH
Confidence 3689999999999
No 316
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=67.13 E-value=1.8 Score=39.24 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.5
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
+++..|.|+|++||||
T Consensus 3 ~~~~~I~l~G~~GsGK 18 (193)
T 2rhm_A 3 QTPALIIVTGHPATGK 18 (193)
T ss_dssp SCCEEEEEEESTTSSH
T ss_pred CCCeEEEEECCCCCCH
Confidence 4678999999999999
No 317
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=66.98 E-value=2 Score=39.46 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=13.0
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
...|+|+|++||||
T Consensus 18 ~~~I~l~G~~GsGK 31 (202)
T 3t61_A 18 PGSIVVMGVSGSGK 31 (202)
T ss_dssp SSCEEEECSTTSCH
T ss_pred CeEEEEECCCCCCH
Confidence 56899999999999
No 318
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=66.90 E-value=2.8 Score=42.46 Aligned_cols=16 Identities=38% Similarity=0.711 Sum_probs=14.3
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
+++..|+|+|++||||
T Consensus 72 ~~~~~v~lvG~pgaGK 87 (349)
T 2www_A 72 PLAFRVGLSGPPGAGK 87 (349)
T ss_dssp CSCEEEEEECCTTSSH
T ss_pred cCceEEEEEcCCCCCH
Confidence 3578999999999999
No 319
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=66.33 E-value=2.2 Score=37.64 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=11.9
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
..++|+|++||||
T Consensus 2 ~~I~l~G~~GsGK 14 (179)
T 3lw7_A 2 KVILITGMPGSGK 14 (179)
T ss_dssp CEEEEECCTTSCH
T ss_pred cEEEEECCCCCCH
Confidence 3789999999999
No 320
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=66.19 E-value=15 Score=39.05 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=12.2
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
...|+|||++||||
T Consensus 101 ~~vI~ivG~~GvGK 114 (504)
T 2j37_W 101 QNVIMFVGLQGSGK 114 (504)
T ss_dssp -EEEEEECSTTSSH
T ss_pred CeEEEEECCCCCCH
Confidence 45799999999999
No 321
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=65.84 E-value=2.2 Score=38.68 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=14.7
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
+++..|+|+|++||||
T Consensus 7 ~~~~~I~l~G~~GsGK 22 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGK 22 (196)
T ss_dssp TTSCEEEEEECTTSSH
T ss_pred cCCCEEEEECCCCCCH
Confidence 4678999999999999
No 322
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=65.31 E-value=2.5 Score=38.93 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.9
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++|..|+|+|++||||
T Consensus 8 ~~~~~I~l~G~~GsGK 23 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGK 23 (212)
T ss_dssp BCSCEEEEEESTTSSH
T ss_pred hcCCEEEEEcCCCCCH
Confidence 4789999999999999
No 323
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=65.29 E-value=3.5 Score=41.54 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcc------------eEEEccCCC
Q 007337 426 SKIALVGPSGGGK------------ISIVSQEPV 447 (607)
Q Consensus 426 e~vaiVG~sGsGK------------i~~V~Q~~~ 447 (607)
..|+|+||||||| ..++++|.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 3799999999999 678888876
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=64.99 E-value=2.2 Score=39.16 Aligned_cols=12 Identities=50% Similarity=0.819 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++||||
T Consensus 3 ~i~i~G~~GsGK 14 (204)
T 2if2_A 3 RIGLTGNIGCGK 14 (204)
T ss_dssp EEEEEECTTSSH
T ss_pred EEEEECCCCcCH
Confidence 699999999999
No 325
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=64.89 E-value=2.5 Score=38.92 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=15.0
Q ss_pred eeCCCEEEEEcCCCCcc
Q 007337 422 LLSGSKIALVGPSGGGK 438 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK 438 (607)
.++|..|+|+|++||||
T Consensus 6 ~~~~~~I~l~G~~GsGK 22 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGK 22 (215)
T ss_dssp -CCCCEEEEEESTTSSH
T ss_pred ccCCcEEEEECCCCCCH
Confidence 35789999999999999
No 326
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=63.51 E-value=2.7 Score=37.58 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=9.4
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.++..|.|+|++||||
T Consensus 3 ~~~~~I~l~G~~GsGK 18 (183)
T 2vli_A 3 MRSPIIWINGPFGVGK 18 (183)
T ss_dssp --CCEEEEECCC----
T ss_pred CCCeEEEEECCCCCCH
Confidence 4678999999999999
No 327
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=63.36 E-value=1.1 Score=45.22 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=24.1
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCcc
Q 007337 413 MVLKGITLKLLSGSK--IALVGPSGGGK 438 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~--vaiVG~sGsGK 438 (607)
.+++.++..++.|+. +.+.||+|+||
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GK 59 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGK 59 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCH
Confidence 578899999999998 99999999999
No 328
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=63.09 E-value=3.9 Score=37.82 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=19.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCcc
Q 007337 413 MVLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 413 ~vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
..++..-+.+ .|..+.|+|||||||
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGK 47 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGK 47 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCH
Confidence 3566655554 688999999999999
No 329
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=62.93 E-value=2.5 Score=38.32 Aligned_cols=12 Identities=58% Similarity=0.963 Sum_probs=11.6
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+++|+|++||||
T Consensus 31 kv~lvG~~g~GK 42 (191)
T 1oix_A 31 KVVLIGDSGVGK 42 (191)
T ss_dssp EEEEEECTTSSH
T ss_pred EEEEECcCCCCH
Confidence 799999999999
No 330
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=62.63 E-value=2.5 Score=38.55 Aligned_cols=14 Identities=36% Similarity=0.537 Sum_probs=12.6
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
...|+|+|++||||
T Consensus 8 ~~~I~i~G~~GsGK 21 (203)
T 1uf9_A 8 PIIIGITGNIGSGK 21 (203)
T ss_dssp CEEEEEEECTTSCH
T ss_pred ceEEEEECCCCCCH
Confidence 35799999999999
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=62.33 E-value=2.7 Score=38.53 Aligned_cols=15 Identities=47% Similarity=0.698 Sum_probs=13.8
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+|..|+|.|++||||
T Consensus 3 ~~~~I~i~G~~GsGK 17 (213)
T 2plr_A 3 KGVLIAFEGIDGSGK 17 (213)
T ss_dssp CCEEEEEECCTTSSH
T ss_pred CCeEEEEEcCCCCCH
Confidence 467899999999999
No 332
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=61.89 E-value=37 Score=35.88 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=19.4
Q ss_pred cccceEEeeCCCEEEEEcCCCCcc
Q 007337 415 LKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 415 L~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
|+.+---+++|+.+.|.|++|+||
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GK 255 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVM 255 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCc
Confidence 444332488999999999999999
No 333
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=61.87 E-value=2.3 Score=38.63 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=15.2
Q ss_pred eeCCCEEEEEcCCCCcc
Q 007337 422 LLSGSKIALVGPSGGGK 438 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK 438 (607)
.+++..|+|+|++||||
T Consensus 9 ~~~~~~I~l~G~~GsGK 25 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGK 25 (199)
T ss_dssp HHHSCEEEEEECTTSSH
T ss_pred cCCCCEEEEECCCCCCH
Confidence 45678999999999999
No 334
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=61.86 E-value=4.6 Score=36.24 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=18.0
Q ss_pred CEEEEEcCCCCcc-----------------eEEEccCCC
Q 007337 426 SKIALVGPSGGGK-----------------ISIVSQEPV 447 (607)
Q Consensus 426 e~vaiVG~sGsGK-----------------i~~V~Q~~~ 447 (607)
..++|+|++|||| ++++-.++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999 777777764
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=61.81 E-value=2.9 Score=41.09 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=13.5
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+|..+.|+|+|||||
T Consensus 32 ~~~livl~G~sGsGK 46 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGK 46 (287)
T ss_dssp SCEEEEEECCTTSCT
T ss_pred CCeEEEEECCCCCCH
Confidence 467899999999999
No 336
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=61.73 E-value=3 Score=38.01 Aligned_cols=12 Identities=58% Similarity=0.963 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+++|+|++||||
T Consensus 7 kv~lvG~~g~GK 18 (199)
T 2f9l_A 7 KVVLIGDSGVGK 18 (199)
T ss_dssp EEEEESSTTSSH
T ss_pred EEEEECcCCCCH
Confidence 689999999999
No 337
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=61.31 E-value=36 Score=37.15 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=25.4
Q ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCCeEEEEc
Q 007337 516 MMNPRILLLDEATSALDAESEYLVQDAMDSLM-KGRTVLVIA 556 (607)
Q Consensus 516 l~~~~IllLDE~TSaLD~~te~~i~~~l~~~~-~~~TvI~It 556 (607)
+++-+++|+||+=.- |......+...+..+. ++.-+|+.|
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~S 315 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMT 315 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEE
Confidence 567799999999875 8776665555444432 344444433
No 338
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=61.06 E-value=2.9 Score=42.03 Aligned_cols=15 Identities=33% Similarity=0.656 Sum_probs=13.6
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
++..+.|+||+||||
T Consensus 39 ~~~lIvI~GPTgsGK 53 (339)
T 3a8t_A 39 KEKLLVLMGATGTGK 53 (339)
T ss_dssp CCEEEEEECSTTSSH
T ss_pred CCceEEEECCCCCCH
Confidence 566899999999999
No 339
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=60.84 E-value=74 Score=32.92 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=13.3
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+...++++|++|+||
T Consensus 99 ~~~vI~ivG~~GvGK 113 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGK 113 (433)
T ss_dssp SSEEEEEECSTTSSH
T ss_pred CCeEEEEECCCCCCH
Confidence 456899999999999
No 340
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=60.26 E-value=3.7 Score=38.21 Aligned_cols=16 Identities=38% Similarity=0.846 Sum_probs=14.1
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++|..|.|+|++||||
T Consensus 2 ~~~~~I~l~G~~GsGK 17 (220)
T 1aky_A 2 SESIRMVLIGPPGAGK 17 (220)
T ss_dssp -CCCEEEEECCTTSSH
T ss_pred CCCcEEEEECCCCCCH
Confidence 4678999999999999
No 341
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=59.66 E-value=3.3 Score=38.50 Aligned_cols=15 Identities=40% Similarity=0.499 Sum_probs=13.2
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
++..|+|+|++||||
T Consensus 3 ~~~~I~i~G~~GSGK 17 (218)
T 1vht_A 3 LRYIVALTGGIGSGK 17 (218)
T ss_dssp CCEEEEEECCTTSCH
T ss_pred CceEEEEECCCCCCH
Confidence 356899999999999
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=59.23 E-value=3.7 Score=37.02 Aligned_cols=14 Identities=36% Similarity=0.337 Sum_probs=12.7
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
-..++|+|+|||||
T Consensus 6 ~~~i~i~G~sGsGK 19 (174)
T 1np6_A 6 IPLLAFAAWSGTGK 19 (174)
T ss_dssp CCEEEEECCTTSCH
T ss_pred ceEEEEEeCCCCCH
Confidence 36899999999999
No 343
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=58.96 E-value=3.6 Score=36.92 Aligned_cols=12 Identities=50% Similarity=0.985 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 4 kv~ivG~~gvGK 15 (184)
T 2zej_A 4 KLMIVGNTGSGK 15 (184)
T ss_dssp EEEEESCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 799999999999
No 344
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=58.54 E-value=3.8 Score=42.12 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred EeEEEECCCCCCCcccccceEEee---CCCEEEEEcCCCCcc
Q 007337 400 DDVWFAYPSRPNHMVLKGITLKLL---SGSKIALVGPSGGGK 438 (607)
Q Consensus 400 ~~vsf~y~~~~~~~vL~~isl~i~---~Ge~vaiVG~sGsGK 438 (607)
+.+.+.++.. ..+++-|+ +... .+..++|+|+|||||
T Consensus 9 ~G~~~G~~~~-g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GK 48 (392)
T 4ag6_A 9 SGIVLGKDRD-GGLVLVDI-WKRGGDRTNSNWTILAKPGAGK 48 (392)
T ss_dssp SCEEEEECTT-SCEEEECT-TCCBTTBCCCCEEEECCTTSSH
T ss_pred CccEEEEeCC-CCeEEEec-ccCcCccccCceEEEcCCCCCH
No 345
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=58.51 E-value=3.6 Score=40.50 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=17.2
Q ss_pred CCCEEEEEcCCCCcc-----------------eEEEccCCCc
Q 007337 424 SGSKIALVGPSGGGK-----------------ISIVSQEPVL 448 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK-----------------i~~V~Q~~~L 448 (607)
++-.|+|.|+||||| +.++.+|.+-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999 4677877765
No 346
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=58.48 E-value=3.4 Score=37.23 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=12.9
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
++..|+|+|++||||
T Consensus 2 ~~~~I~l~G~~GsGK 16 (196)
T 1tev_A 2 KPLVVFVLGGPGAGK 16 (196)
T ss_dssp -CEEEEEECCTTSSH
T ss_pred CceEEEEECCCCCCH
Confidence 356899999999999
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=57.40 E-value=4.5 Score=36.95 Aligned_cols=16 Identities=44% Similarity=0.769 Sum_probs=14.0
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.++..|.|+|++||||
T Consensus 18 ~~~~~I~l~G~~GsGK 33 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGK 33 (201)
T ss_dssp CSCCEEEEECCTTSSH
T ss_pred CCCeEEEEECCCCCCH
Confidence 3567899999999999
No 348
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=57.40 E-value=4 Score=35.82 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=28.5
Q ss_pred HHHHHHhc--CCCEEEE-eccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhhh
Q 007337 510 AIARALMM--NPRILLL-DEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQS 564 (607)
Q Consensus 510 alARAll~--~~~IllL-DE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~~ 564 (607)
.+++..++ +++++++ =++++ .+......+.+.+ .++.+|+|.|..+....
T Consensus 71 ~~~~~~~~~~~~~~~i~v~D~~~---~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 71 IIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAKS 123 (165)
T ss_dssp HHHHHHHHHHCCSEEEEEEETTC---HHHHHHHHHHHHH--TTCCEEEEEECHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEEecCCc---hhHhHHHHHHHHh--cCCCEEEEEEchHhccc
Confidence 45566664 7876653 22333 3322223333333 47899999999887643
No 349
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=57.11 E-value=3.9 Score=46.21 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCEEEEeccCCCC------CHHHHHHHHHHHH----HhcC--CCeEEEEccCchhhh-------hcCEEE
Q 007337 509 VAIARALMMNPRILLLDEATSAL------DAESEYLVQDAMD----SLMK--GRTVLVIAHRLSTVQ-------SADTVA 569 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaL------D~~te~~i~~~l~----~~~~--~~TvI~ItHrl~~l~-------~aD~Ii 569 (607)
-...+|--..|.|+++||.-+=. +.+.++.+...+. .+.. +-.+|..|.|++.+. +.|+.+
T Consensus 288 ~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I 367 (806)
T 3cf2_A 288 KAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV 367 (806)
T ss_dssp HHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEE
T ss_pred HHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEE
Confidence 34555556779999999975422 2233444444433 2212 235667788887653 567776
Q ss_pred EE
Q 007337 570 VV 571 (607)
Q Consensus 570 vl 571 (607)
-+
T Consensus 368 ~i 369 (806)
T 3cf2_A 368 DI 369 (806)
T ss_dssp EC
T ss_pred ec
Confidence 65
No 350
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=56.63 E-value=26 Score=34.10 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=28.0
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCch
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLS 560 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~ 560 (607)
++.++++||+-. ++......+.+.+.+...+..+|++|++.+
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 478999999743 455555666677766544556677777654
No 351
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=56.27 E-value=4.4 Score=36.83 Aligned_cols=12 Identities=58% Similarity=0.974 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.|+|+|++||||
T Consensus 2 ~I~i~G~~GsGK 13 (205)
T 2jaq_A 2 KIAIFGTVGAGK 13 (205)
T ss_dssp EEEEECCTTSCH
T ss_pred EEEEECCCccCH
Confidence 689999999999
No 352
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=55.76 E-value=4.1 Score=40.55 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=17.9
Q ss_pred CCEEEEEcCCCCcc------------eEEEccCCC
Q 007337 425 GSKIALVGPSGGGK------------ISIVSQEPV 447 (607)
Q Consensus 425 Ge~vaiVG~sGsGK------------i~~V~Q~~~ 447 (607)
+..+.|+||||||| .-+|+.|..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 45789999999999 456666665
No 353
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.70 E-value=3.8 Score=39.35 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.++|+|++||||
T Consensus 3 li~I~G~~GSGK 14 (253)
T 2ze6_A 3 LHLIYGPTCSGK 14 (253)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCcCH
Confidence 689999999999
No 354
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=55.61 E-value=4.4 Score=37.91 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=13.3
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.++..|.|+|++||||
T Consensus 5 ~~~~~I~l~G~~GsGK 20 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGK 20 (227)
T ss_dssp --CCEEEEEECTTSSH
T ss_pred ccCcEEEEECCCCCCH
Confidence 4568899999999999
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=55.29 E-value=4.1 Score=36.29 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.+.|+|++||||
T Consensus 6 ~i~i~G~~GsGK 17 (175)
T 1via_A 6 NIVFIGFMGSGK 17 (175)
T ss_dssp CEEEECCTTSCH
T ss_pred EEEEEcCCCCCH
Confidence 699999999999
No 356
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=55.21 E-value=4.1 Score=36.53 Aligned_cols=14 Identities=50% Similarity=0.769 Sum_probs=12.4
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
+.+|+|+|++||||
T Consensus 2 ~~~I~l~G~~GsGK 15 (184)
T 2iyv_A 2 APKAVLVGLPGSGK 15 (184)
T ss_dssp CCSEEEECSTTSSH
T ss_pred CCeEEEECCCCCCH
Confidence 35699999999999
No 357
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=55.12 E-value=1.8 Score=44.25 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=34.6
Q ss_pred EEEEEcCCCCcceEEE----ccC----CCcccccHHHHhhcCCCCCCCHHHHHHHHHHcCchH
Q 007337 427 KIALVGPSGGGKISIV----SQE----PVLFNCSIEENIAYGCDGKASSADIENAAKMANAHD 481 (607)
Q Consensus 427 ~vaiVG~sGsGKi~~V----~Q~----~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~a~l~~ 481 (607)
+++|||++|+||-+++ ..+ ++-| .|+..|+... ..+++++..+++.++.++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~-~Ti~pn~g~~---~v~~~~l~~~~~~~~~~~ 61 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPF-ATIDKNVGVV---PLEDERLYALQRTFAKGE 61 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCG-GGGSTTEEEE---ECCCHHHHHHHHHHCBTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCC-ceeccceeeE---ecChHHHHHHHHHhcccc
Confidence 5899999999991111 111 1222 3899999876 356778888888887654
No 358
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=54.66 E-value=4.5 Score=41.25 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=17.6
Q ss_pred ccceEEeeCCCEEEEEcCCCCcc
Q 007337 416 KGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 416 ~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
++..+++.+ ....|+|++||||
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGK 38 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGK 38 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSH
T ss_pred cceEEecCC-CeEEEECCCCCCH
Confidence 455666666 5889999999999
No 359
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=54.49 E-value=4.2 Score=37.86 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=13.5
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
++..|.|+|++||||
T Consensus 4 ~~~~I~l~G~~GsGK 18 (222)
T 1zak_A 4 DPLKVMISGAPASGK 18 (222)
T ss_dssp CSCCEEEEESTTSSH
T ss_pred CCeEEEEECCCCCCH
Confidence 457899999999999
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=53.40 E-value=4.7 Score=38.39 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=14.2
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
+++..+.|.|++||||
T Consensus 27 ~~~~~I~l~G~~GsGK 42 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGK 42 (243)
T ss_dssp SCCEEEEEECCTTSSH
T ss_pred CCCcEEEEECCCCCCH
Confidence 3667899999999999
No 361
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=53.19 E-value=2.7 Score=38.70 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=39.2
Q ss_pred EEEEEcCCCCcc-----------------eEEEccCCC----cccccHHHHhh--cCC-CCCCCHHHHHHHHHHcCchHH
Q 007337 427 KIALVGPSGGGK-----------------ISIVSQEPV----LFNCSIEENIA--YGC-DGKASSADIENAAKMANAHDF 482 (607)
Q Consensus 427 ~vaiVG~sGsGK-----------------i~~V~Q~~~----Lf~gTIreNI~--~g~-~~~~~~~~i~~al~~a~l~~~ 482 (607)
.|+|+|++|||| +.++. +|. ++..++|+.+. ++. +.+...+.+..++......+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 80 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA-FPRYGQSVAADIAAEALHGEHGDLASSVYAMATLFALDRAGAVHT 80 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE-SSEEEEEEEEEEHHHHEEEEEEEEEEEHHHHHHHHHHHHHEEHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe-ecCCCCcchhhHHHHHHcccccccCCCHhHHHHHHHHHHhhhHHH
Confidence 689999999999 33333 332 12455666552 110 001112223333333333566
Q ss_pred HHhCCccccccccCCCC
Q 007337 483 ISNFPEKYQTFVGERGV 499 (607)
Q Consensus 483 i~~lp~G~~T~ige~G~ 499 (607)
+..++.+.++.|.++..
T Consensus 81 i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 81 IQGLCRGYDVVILDRYV 97 (214)
T ss_dssp HHHEEEEEEEEEEEEEE
T ss_pred HHHHhhCCCEEEECCCc
Confidence 77776677888887654
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=53.17 E-value=4.6 Score=36.86 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=13.0
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+...|+|+|++||||
T Consensus 14 ~~~~I~l~G~~GsGK 28 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGK 28 (203)
T ss_dssp TCEEEEEECSTTSSH
T ss_pred CCcEEEEECCCCCCH
Confidence 345799999999999
No 363
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=52.74 E-value=5.2 Score=36.94 Aligned_cols=12 Identities=50% Similarity=0.891 Sum_probs=11.3
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+++|+|++||||
T Consensus 2 ~I~l~G~~GsGK 13 (216)
T 3fb4_A 2 NIVLMGLPGAGK 13 (216)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 589999999999
No 364
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=52.66 E-value=11 Score=41.23 Aligned_cols=54 Identities=9% Similarity=0.077 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCCeEEEEcc
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSLM--KGRTVLVIAH 557 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~~--~~~TvI~ItH 557 (607)
.+++|...+.+.+++++.-++++.+|+++|..++. ..+.++... ..+|++++||
T Consensus 168 ~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~-~l~la~~v~~~g~rtI~VlTK 223 (608)
T 3szr_A 168 DIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE-ALSMAQEVDPEGDRTIGILTK 223 (608)
T ss_dssp SHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH-HHHHHHHHCSSCCSEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH-HHHHHHHHhhcCCceEEEecc
Confidence 45779999999999999999999999999988543 334444442 3577777777
No 365
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=51.46 E-value=5.1 Score=35.32 Aligned_cols=13 Identities=38% Similarity=0.616 Sum_probs=11.9
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
..|.|+|++||||
T Consensus 3 ~~I~l~G~~GsGK 15 (173)
T 1e6c_A 3 EPIFMVGARGCGM 15 (173)
T ss_dssp CCEEEESCTTSSH
T ss_pred ceEEEECCCCCCH
Confidence 4689999999999
No 366
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=51.11 E-value=10 Score=34.22 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=18.1
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcc
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
.++..-+ --.|.-+.|.|+||+||
T Consensus 6 ~lHas~v-~v~G~gvli~G~SGaGK 29 (181)
T 3tqf_A 6 TWHANFL-VIDKMGVLITGEANIGK 29 (181)
T ss_dssp EEESEEE-EETTEEEEEEESSSSSH
T ss_pred EEEEEEE-EECCEEEEEEcCCCCCH
Confidence 4444433 35688999999999999
No 367
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.86 E-value=4.4 Score=37.99 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.6
Q ss_pred eeCCCEEEEEcCCCCcc
Q 007337 422 LLSGSKIALVGPSGGGK 438 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK 438 (607)
.++...|.|.||.||||
T Consensus 26 ~~k~kiI~llGpPGsGK 42 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGK 42 (217)
T ss_dssp TTSCEEEEEECCTTCCH
T ss_pred ccCCcEEEEECCCCCCH
Confidence 45667899999999999
No 368
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=50.77 E-value=5.4 Score=35.77 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.|.|+|++||||
T Consensus 3 ~I~i~G~~GsGK 14 (194)
T 1nks_A 3 IGIVTGIPGVGK 14 (194)
T ss_dssp EEEEEECTTSCH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 369
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=50.77 E-value=5.8 Score=36.63 Aligned_cols=12 Identities=42% Similarity=0.858 Sum_probs=11.3
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+++|+|++||||
T Consensus 2 ~I~l~G~~GsGK 13 (216)
T 3dl0_A 2 NLVLMGLPGAGK 13 (216)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 589999999999
No 370
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=50.43 E-value=45 Score=32.37 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=53.6
Q ss_pred eeCCCEEEEEcCCCCcc-----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHH----HHcCch
Q 007337 422 LLSGSKIALVGPSGGGK-----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAA----KMANAH 480 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK-----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al----~~a~l~ 480 (607)
-+++++|+|+|..|+|| +.+|.=||. ++.-..+. ..+ ..+-.++.... ..+.+.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~---~~~~~~l~-~~~-~~~l~d~l~~~~~~~~~~~~~ 112 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK---HDSTFTLT-GSL-VPTVIDVLKDVDFHPEELRPE 112 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS---CCTTHHHH-TSC-CCCHHHHHHHTTSCGGGCCHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC---CCHHHHhC-ccC-CCCHHHHHhhccccccCCCHH
Confidence 45788999999999999 777777764 33333332 222 33333322210 134455
Q ss_pred HHHHhCCcccccc-----ccCCCCCCChhHHHHHHHHHH--HhcCCCEEEEeccCC
Q 007337 481 DFISNFPEKYQTF-----VGERGVRLSGGQKQRVAIARA--LMMNPRILLLDEATS 529 (607)
Q Consensus 481 ~~i~~lp~G~~T~-----ige~G~~LSGGQkQRialARA--ll~~~~IllLDE~TS 529 (607)
+.+..-+.|++-. ....+... -...+...+.+. +..+-|++|+|=|..
T Consensus 113 ~~i~~~~~~l~vlp~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~yD~ViiD~p~~ 167 (307)
T 3end_A 113 DFVFEGFNGVMCVEAGGPPAGTGCGG-YVVGQTVKLLKQHHLLDDTDVVIFDVLGD 167 (307)
T ss_dssp HHCEECGGGCEEEECCCCCSSSSCTT-HHHHHHHHHHHHTTTTSSCSEEEEEECCS
T ss_pred HhhccCCCCceEEECCCcccccccch-hhhHHHHHHHHhhhccccCCEEEEeCCCc
Confidence 5555545555533 11111111 123344455555 556789999996543
No 371
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=50.37 E-value=6 Score=35.23 Aligned_cols=13 Identities=46% Similarity=0.662 Sum_probs=11.9
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+|+++|++|+||
T Consensus 8 ~~i~lvG~~gvGK 20 (188)
T 2wjg_A 8 YEIALIGNPNVGK 20 (188)
T ss_dssp EEEEEECSTTSSH
T ss_pred CEEEEECCCCCCH
Confidence 3799999999999
No 372
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=49.74 E-value=6.6 Score=34.43 Aligned_cols=12 Identities=42% Similarity=0.590 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++||||
T Consensus 2 ~I~l~G~~GsGK 13 (168)
T 2pt5_A 2 RIYLIGFMCSGK 13 (168)
T ss_dssp EEEEESCTTSCH
T ss_pred eEEEECCCCCCH
Confidence 689999999999
No 373
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=49.57 E-value=6.7 Score=34.52 Aligned_cols=14 Identities=36% Similarity=0.608 Sum_probs=12.4
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
-+.++|.|..||||
T Consensus 7 ~~~i~l~G~~GsGK 20 (168)
T 1zuh_A 7 MQHLVLIGFMGSGK 20 (168)
T ss_dssp -CEEEEESCTTSSH
T ss_pred cceEEEECCCCCCH
Confidence 37899999999999
No 374
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=49.12 E-value=6.4 Score=35.49 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.|+|.|++||||
T Consensus 2 ~I~l~G~~GsGK 13 (197)
T 2z0h_A 2 FITFEGIDGSGK 13 (197)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 375
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=49.03 E-value=1.3e+02 Score=28.74 Aligned_cols=18 Identities=0% Similarity=-0.252 Sum_probs=15.5
Q ss_pred EeeCCCEEEEEcCCCCcc
Q 007337 421 KLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK 438 (607)
-+++|..+.|.|.+|+||
T Consensus 17 Gl~~gs~~li~g~p~~~~ 34 (260)
T 3bs4_A 17 IKKHSLILIHEEDASSRG 34 (260)
T ss_dssp BCTTCEEEEEECSGGGCH
T ss_pred CCCCCcEEEEEeCCCccH
Confidence 378999999998888888
No 376
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=49.01 E-value=6.5 Score=35.98 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=12.0
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
..|+|+|.+||||
T Consensus 13 ~iIgltG~~GSGK 25 (192)
T 2grj_A 13 MVIGVTGKIGTGK 25 (192)
T ss_dssp EEEEEECSTTSSH
T ss_pred eEEEEECCCCCCH
Confidence 5699999999999
No 377
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=49.00 E-value=6.3 Score=37.56 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=12.0
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-.|+|.|++||||
T Consensus 23 ~iI~I~G~~GSGK 35 (252)
T 1uj2_A 23 FLIGVSGGTASGK 35 (252)
T ss_dssp EEEEEECSTTSSH
T ss_pred EEEEEECCCCCCH
Confidence 4699999999999
No 378
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=48.90 E-value=6.5 Score=35.83 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=11.6
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.++|.|++||||
T Consensus 4 ~i~i~G~~GsGK 15 (208)
T 3ake_A 4 IVTIDGPSASGK 15 (208)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 799999999999
No 379
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=48.86 E-value=6.1 Score=37.94 Aligned_cols=15 Identities=40% Similarity=0.390 Sum_probs=13.6
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
++..|.|+|++||||
T Consensus 3 ~~~lIvl~G~pGSGK 17 (260)
T 3a4m_A 3 DIMLIILTGLPGVGK 17 (260)
T ss_dssp CCEEEEEECCTTSSH
T ss_pred CCEEEEEEcCCCCCH
Confidence 567899999999999
No 380
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=48.27 E-value=6.1 Score=35.41 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=12.6
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
+..|+|+|++||||
T Consensus 6 ~~~I~l~G~~GsGK 19 (194)
T 1qf9_A 6 PNVVFVLGGPGSGK 19 (194)
T ss_dssp CEEEEEEESTTSSH
T ss_pred CcEEEEECCCCCCH
Confidence 35799999999999
No 381
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=48.20 E-value=7.3 Score=36.76 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=12.2
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.+|..|.|.|++||||
T Consensus 23 ~~g~~I~~eG~~GsGK 38 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGK 38 (227)
T ss_dssp CCCCEEEEECCC---C
T ss_pred cCCeEEEEECCCCCCH
Confidence 5899999999999999
No 382
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=47.80 E-value=6.6 Score=38.99 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=12.4
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
...+.|+|||||||
T Consensus 10 ~~~i~i~GptgsGK 23 (316)
T 3foz_A 10 PKAIFLMGPTASGK 23 (316)
T ss_dssp CEEEEEECCTTSCH
T ss_pred CcEEEEECCCccCH
Confidence 35789999999999
No 383
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=47.31 E-value=7.5 Score=34.85 Aligned_cols=12 Identities=50% Similarity=0.714 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.|+|.|++||||
T Consensus 2 ~I~l~G~~GsGK 13 (195)
T 2pbr_A 2 LIAFEGIDGSGK 13 (195)
T ss_dssp EEEEECSTTSCH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 384
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=47.17 E-value=50 Score=36.33 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=21.9
Q ss_pred CCCEEEEeccCCCCCHHHHHHHHHHHHHhc
Q 007337 518 NPRILLLDEATSALDAESEYLVQDAMDSLM 547 (607)
Q Consensus 518 ~~~IllLDE~TSaLD~~te~~i~~~l~~~~ 547 (607)
+-+++|+||+ =.+|...+..+...++.+.
T Consensus 318 ~l~~lVlDEA-H~l~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 318 AYDIIICDEC-HSTDSTTILGIGTVLDQAE 346 (666)
T ss_dssp SCSEEEETTT-TCCSHHHHHHHHHHHHHTT
T ss_pred cccEEEEccc-hhcCccHHHHHHHHHHhhh
Confidence 4689999999 7789888777666555543
No 385
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=46.81 E-value=8.2 Score=34.12 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.8
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
..+..+.|+|++|+||
T Consensus 41 ~~~~~~ll~G~~G~GK 56 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGK 56 (195)
T ss_dssp SSSCEEEEECCTTSCH
T ss_pred CCCCceEEECCCCCCH
Confidence 3457899999999999
No 386
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=46.07 E-value=7.7 Score=33.36 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 5 ~i~v~G~~~~GK 16 (167)
T 1kao_A 5 KVVVLGSGGVGK 16 (167)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 387
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=45.90 E-value=7.9 Score=33.47 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 7 ~i~v~G~~~~GK 18 (168)
T 1z2a_A 7 KMVVVGNGAVGK 18 (168)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECcCCCCH
Confidence 689999999999
No 388
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=45.84 E-value=43 Score=31.55 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=40.2
Q ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccC-----------chhhhhcCEEEEEe
Q 007337 517 MNPRILLLDEATSALDAESEYLVQDAMDSLMKGRTVLVIAHR-----------LSTVQSADTVAVVS 572 (607)
Q Consensus 517 ~~~~IllLDE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHr-----------l~~l~~aD~Iivl~ 572 (607)
.+.+++++||+-=..| ...+.+.+.+ .+++||+-.++ ...++.||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 7789999999999865 4455555655 58899998888 45678999999885
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=45.80 E-value=7 Score=38.10 Aligned_cols=14 Identities=43% Similarity=0.532 Sum_probs=12.6
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
...|+|+|++||||
T Consensus 75 ~~iI~I~G~~GSGK 88 (281)
T 2f6r_A 75 LYVLGLTGISGSGK 88 (281)
T ss_dssp CEEEEEEECTTSCH
T ss_pred CEEEEEECCCCCCH
Confidence 35799999999999
No 390
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=44.93 E-value=7.7 Score=33.56 Aligned_cols=13 Identities=46% Similarity=0.756 Sum_probs=11.8
Q ss_pred EEEEEcCCCCcce
Q 007337 427 KIALVGPSGGGKI 439 (607)
Q Consensus 427 ~vaiVG~sGsGKi 439 (607)
+|+++|++|+||-
T Consensus 4 ki~~vG~~~~GKS 16 (166)
T 3q72_A 4 KVLLLGAPGVGKS 16 (166)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6899999999993
No 391
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=44.73 E-value=8.4 Score=33.05 Aligned_cols=52 Identities=15% Similarity=0.374 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCEEEE-eccCCCCCHHHHHHHHHHHHHhcCCCeEEEEccCchhhh
Q 007337 509 VAIARALMMNPRILLL-DEATSALDAESEYLVQDAMDSLMKGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 509 ialARAll~~~~IllL-DE~TSaLD~~te~~i~~~l~~~~~~~TvI~ItHrl~~l~ 563 (607)
....+..+++++.+++ =+++..+... +..+.+.+.+ .+.-+++|..+.+...
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~~~-~~~~~~~~~~--~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 70 QEKVDRALEDAEVVLFAVDGRAELTQA-DYEVAEYLRR--KGKPVILVATKVDDPK 122 (161)
T ss_dssp HHHHHHHTTTCSEEEEEEESSSCCCHH-HHHHHHHHHH--HTCCEEEEEECCCSGG
T ss_pred HHHHHHHHHhCCEEEEEEECCCcccHh-HHHHHHHHHh--cCCCEEEEEECccccc
Confidence 3455667788876654 2234434333 3445555554 2455666666655443
No 392
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=44.69 E-value=8.4 Score=33.41 Aligned_cols=13 Identities=62% Similarity=0.836 Sum_probs=11.7
Q ss_pred EEEEEcCCCCcce
Q 007337 427 KIALVGPSGGGKI 439 (607)
Q Consensus 427 ~vaiVG~sGsGKi 439 (607)
+|+++|++|+||-
T Consensus 4 ki~ivG~~~~GKS 16 (169)
T 3q85_A 4 KVMLVGESGVGKS 16 (169)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6899999999993
No 393
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=44.25 E-value=4.5 Score=41.54 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.6
Q ss_pred cceEEeeCCCEEEEEcCCCCcc
Q 007337 417 GITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 417 ~isl~i~~Ge~vaiVG~sGsGK 438 (607)
|.=+.|-+||+.+|+|++|+||
T Consensus 167 D~l~PigrGQR~lIfg~~g~GK 188 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGK 188 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCH
T ss_pred hhcccccCCceEEEecCCCCCh
Confidence 4456789999999999999999
No 394
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=43.97 E-value=8.8 Score=33.08 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHHh-----cCCCeEEEEccCchh
Q 007337 509 VAIARALMMNPRILLLDEATSALDAESEYLVQDAMDSL-----MKGRTVLVIAHRLST 561 (607)
Q Consensus 509 ialARAll~~~~IllLDE~TSaLD~~te~~i~~~l~~~-----~~~~TvI~ItHrl~~ 561 (607)
-.+.+..+++++.+++ ..+.-|+++-..+.+.+... ..+..+++|....+.
T Consensus 58 ~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (164)
T 1r8s_A 58 RPLWRHYFQNTQGLIF--VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113 (164)
T ss_dssp HHHHHHHTTTCSEEEE--EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred HHHHHHHhccCCEEEE--EEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCC
Confidence 3566778888887765 11122333222222333332 235677777766554
No 395
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=43.80 E-value=8.7 Score=34.35 Aligned_cols=15 Identities=33% Similarity=0.638 Sum_probs=13.0
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+.-+|+++|++||||
T Consensus 47 ~~~~i~vvG~~g~GK 61 (193)
T 2ged_A 47 YQPSIIIAGPQNSGK 61 (193)
T ss_dssp CCCEEEEECCTTSSH
T ss_pred CCCEEEEECCCCCCH
Confidence 334899999999999
No 396
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=43.67 E-value=8.9 Score=33.25 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=11.8
Q ss_pred EEEEEcCCCCcce
Q 007337 427 KIALVGPSGGGKI 439 (607)
Q Consensus 427 ~vaiVG~sGsGKi 439 (607)
+|+++|++|+||-
T Consensus 8 ~i~v~G~~~~GKs 20 (170)
T 1z08_A 8 KVVLLGEGCVGKT 20 (170)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECcCCCCHH
Confidence 6899999999993
No 397
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=43.45 E-value=9.1 Score=33.01 Aligned_cols=12 Identities=42% Similarity=0.839 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 5 ki~v~G~~~~GK 16 (167)
T 1c1y_A 5 KLVVLGSGGVGK 16 (167)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 398
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=43.45 E-value=9.4 Score=36.22 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=14.4
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+|..|+|.|++||||
T Consensus 26 ~~~~i~~eG~~GsGK 40 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGK 40 (236)
T ss_dssp CCCEEEEEESTTSCH
T ss_pred CCeEEEEECCCCCCH
Confidence 689999999999999
No 399
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=43.42 E-value=9 Score=33.41 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=11.8
Q ss_pred EEEEEcCCCCcce
Q 007337 427 KIALVGPSGGGKI 439 (607)
Q Consensus 427 ~vaiVG~sGsGKi 439 (607)
+|+|+|++|+||-
T Consensus 6 ki~i~G~~~vGKS 18 (175)
T 2nzj_A 6 RVVLLGDPGVGKT 18 (175)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCccHH
Confidence 6899999999993
No 400
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=43.40 E-value=8.9 Score=33.63 Aligned_cols=13 Identities=46% Similarity=0.787 Sum_probs=11.8
Q ss_pred EEEEEcCCCCcce
Q 007337 427 KIALVGPSGGGKI 439 (607)
Q Consensus 427 ~vaiVG~sGsGKi 439 (607)
+|+++|++|+||-
T Consensus 10 ~i~v~G~~~~GKS 22 (182)
T 1ky3_A 10 KVIILGDSGVGKT 22 (182)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6999999999993
No 401
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=43.38 E-value=9.1 Score=32.93 Aligned_cols=12 Identities=50% Similarity=0.894 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 6 ~i~v~G~~~~GK 17 (168)
T 1u8z_A 6 KVIMVGSGGVGK 17 (168)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 402
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=43.21 E-value=8.5 Score=33.32 Aligned_cols=12 Identities=67% Similarity=0.952 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 5 ~i~v~G~~~~GK 16 (170)
T 1g16_A 5 KILLIGDSGVGK 16 (170)
T ss_dssp EEEEEESTTSSH
T ss_pred EEEEECcCCCCH
Confidence 689999999999
No 403
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=43.14 E-value=10 Score=33.14 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=14.0
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++.-+|+++|++|+||
T Consensus 6 ~~~~~i~v~G~~~~GK 21 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGK 21 (178)
T ss_dssp CCCCEEEEESCTTTTH
T ss_pred CCCCEEEEECCCCCCH
Confidence 3567899999999999
No 404
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=43.13 E-value=9.5 Score=35.63 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=14.9
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++|..|.+.|++||||
T Consensus 3 ~~g~~i~~eG~~g~GK 18 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGK 18 (216)
T ss_dssp CCCCEEEEEECSSSSH
T ss_pred CCCeEEEEECCCCCCH
Confidence 4799999999999999
No 405
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=43.02 E-value=9.3 Score=33.01 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCEEEE--eccCCCCCHHHHHHHH---HHHHHh-cCCCeEEEEccCchhhh
Q 007337 510 AIARALMMNPRILLL--DEATSALDAESEYLVQ---DAMDSL-MKGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 510 alARAll~~~~IllL--DE~TSaLD~~te~~i~---~~l~~~-~~~~TvI~ItHrl~~l~ 563 (607)
.+.+..+++++.+++ | +-|+.+-..+. +.+.+. .++..+++|....+...
T Consensus 67 ~~~~~~~~~~d~~i~v~d----~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1ek0_A 67 SLAPXYYRNAQAALVVYD----VTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122 (170)
T ss_dssp GGHHHHHTTCSEEEEEEE----TTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred hhhhhhhccCcEEEEEEe----cCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 456777788776653 4 22444333333 233332 24567777777766554
No 406
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=42.92 E-value=7.9 Score=39.90 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=17.2
Q ss_pred CEEEEEcCCCCcc------------eEEEccCCC
Q 007337 426 SKIALVGPSGGGK------------ISIVSQEPV 447 (607)
Q Consensus 426 e~vaiVG~sGsGK------------i~~V~Q~~~ 447 (607)
..++|+||||||| .-+++.|..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM 36 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence 4689999999999 456776653
No 407
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=42.73 E-value=8.7 Score=35.42 Aligned_cols=14 Identities=50% Similarity=0.788 Sum_probs=12.7
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
+..++|+|++||||
T Consensus 3 ~~~i~i~G~~gsGk 16 (219)
T 2h92_A 3 AINIALDGPAAAGK 16 (219)
T ss_dssp CCCEEEECCTTSSH
T ss_pred ceEEEEECCCCCCH
Confidence 46799999999999
No 408
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=42.53 E-value=8.9 Score=32.87 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 5 ~i~v~G~~~~GK 16 (166)
T 2ce2_X 5 KLVVVGAGGVGK 16 (166)
T ss_dssp EEEEEESTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 409
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=42.40 E-value=9.5 Score=33.37 Aligned_cols=12 Identities=50% Similarity=0.853 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 9 ~i~v~G~~~~GK 20 (177)
T 1wms_A 9 KVILLGDGGVGK 20 (177)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 410
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=42.39 E-value=9.1 Score=35.62 Aligned_cols=16 Identities=44% Similarity=0.887 Sum_probs=14.4
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.+|..|.|.|++||||
T Consensus 4 m~g~~i~~eG~~gsGK 19 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGK 19 (213)
T ss_dssp -CCEEEEEECSTTSSH
T ss_pred CCceEEEEEcCCCCCH
Confidence 4789999999999999
No 411
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=42.35 E-value=9.5 Score=33.00 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 5 ~i~v~G~~~~GK 16 (172)
T 2erx_A 5 RVAVFGAGGVGK 16 (172)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 412
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=42.13 E-value=9.7 Score=32.94 Aligned_cols=12 Identities=50% Similarity=0.919 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 8 ~i~v~G~~~~GK 19 (170)
T 1z0j_A 8 KVCLLGDTGVGK 19 (170)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECcCCCCH
Confidence 689999999999
No 413
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=41.90 E-value=9.4 Score=38.10 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=17.8
Q ss_pred CEEEEEcCCCCcc------------eEEEccCCCc
Q 007337 426 SKIALVGPSGGGK------------ISIVSQEPVL 448 (607)
Q Consensus 426 e~vaiVG~sGsGK------------i~~V~Q~~~L 448 (607)
..+.|+||+|||| .-+++-|.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 4789999999999 4566666554
No 414
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=41.80 E-value=10 Score=35.27 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=14.2
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+|..|.+.|++||||
T Consensus 2 ~g~~i~~eG~~gsGK 16 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGK 16 (213)
T ss_dssp CCCEEEEEECTTSCH
T ss_pred CCeEEEEECCCCCCH
Confidence 589999999999999
No 415
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=41.79 E-value=9.8 Score=34.02 Aligned_cols=12 Identities=42% Similarity=0.756 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 22 ki~ivG~~~vGK 33 (184)
T 3ihw_A 22 KVGIVGNLSSGK 33 (184)
T ss_dssp EEEEECCTTSCH
T ss_pred EEEEECCCCCCH
Confidence 699999999999
No 416
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=40.99 E-value=10 Score=32.67 Aligned_cols=12 Identities=50% Similarity=0.756 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 8 ~i~v~G~~~~GK 19 (170)
T 1r2q_A 8 KLVLLGESAVGK 19 (170)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 417
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=40.56 E-value=9.3 Score=33.68 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.8
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
..+..+.|+||+|+||
T Consensus 41 ~~~~~vll~G~~G~GK 56 (187)
T 2p65_A 41 RTKNNPILLGDPGVGK 56 (187)
T ss_dssp SSSCEEEEESCGGGCH
T ss_pred CCCCceEEECCCCCCH
Confidence 4467789999999999
No 418
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=40.38 E-value=11 Score=32.71 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=12.4
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
.-+|+++|++|+||
T Consensus 7 ~~~i~v~G~~~~GK 20 (171)
T 1upt_A 7 EMRILILGLDGAGK 20 (171)
T ss_dssp CEEEEEECSTTSSH
T ss_pred ccEEEEECCCCCCH
Confidence 34799999999999
No 419
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=40.34 E-value=9.9 Score=33.79 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=12.1
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+|+++|++|+||
T Consensus 17 ~ki~ivG~~~vGK 29 (181)
T 1fzq_A 17 VRILLLGLDNAGK 29 (181)
T ss_dssp EEEEEEESTTSSH
T ss_pred eEEEEECCCCCCH
Confidence 4799999999999
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=40.32 E-value=12 Score=35.06 Aligned_cols=16 Identities=44% Similarity=0.889 Sum_probs=14.0
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.++..|.|+|++||||
T Consensus 14 ~~~~~I~l~G~~GsGK 29 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGK 29 (233)
T ss_dssp CCCCEEEEECCTTSSH
T ss_pred CCCeEEEEECCCCCCH
Confidence 3567899999999999
No 421
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=40.32 E-value=11 Score=33.06 Aligned_cols=12 Identities=50% Similarity=0.886 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 11 ~i~v~G~~~~GK 22 (181)
T 3tw8_B 11 KLLIIGDSGVGK 22 (181)
T ss_dssp EEEEECCTTSCH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 422
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=40.28 E-value=11 Score=34.17 Aligned_cols=12 Identities=67% Similarity=0.955 Sum_probs=11.6
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|||++|+||
T Consensus 25 ki~vvG~~~vGK 36 (195)
T 3cbq_A 25 KVMLVGESGVGK 36 (195)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 799999999999
No 423
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=40.15 E-value=10 Score=33.26 Aligned_cols=12 Identities=50% Similarity=0.828 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 11 ~i~v~G~~~~GK 22 (181)
T 2fn4_A 11 KLVVVGGGGVGK 22 (181)
T ss_dssp EEEEEECTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 424
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=39.80 E-value=11 Score=32.97 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=12.2
Q ss_pred EEEEEcCCCCcceE
Q 007337 427 KIALVGPSGGGKIS 440 (607)
Q Consensus 427 ~vaiVG~sGsGKi~ 440 (607)
+|+|+|++|+||-+
T Consensus 8 ki~v~G~~~~GKss 21 (178)
T 2hxs_A 8 KIVVLGDGASGKTS 21 (178)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECcCCCCHHH
Confidence 68999999999943
No 425
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=39.76 E-value=11 Score=35.51 Aligned_cols=16 Identities=31% Similarity=0.414 Sum_probs=14.8
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
.+|..|.|.|.+||||
T Consensus 19 ~~~~~i~~~G~~g~GK 34 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGK 34 (223)
T ss_dssp CCCEEEEEECSTTSSH
T ss_pred CCCeEEEEECCCCCCH
Confidence 4789999999999999
No 426
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=39.41 E-value=11 Score=39.56 Aligned_cols=24 Identities=38% Similarity=0.601 Sum_probs=19.7
Q ss_pred ccccceEEeeCCCEEEEEcCCCCcc
Q 007337 414 VLKGITLKLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 414 vL~~isl~i~~Ge~vaiVG~sGsGK 438 (607)
+++.+ ..+-+|++++|+|+||+||
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGK 164 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGK 164 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCc
Confidence 34444 5678999999999999999
No 427
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=39.35 E-value=11 Score=34.79 Aligned_cols=12 Identities=42% Similarity=1.002 Sum_probs=11.0
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.+.|.||.||||
T Consensus 2 ~Iil~GpPGsGK 13 (206)
T 3sr0_A 2 ILVFLGPPGAGK 13 (206)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 578999999999
No 428
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=39.12 E-value=11 Score=32.98 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 16 ~i~v~G~~~~GK 27 (179)
T 2y8e_A 16 KLVFLGEQSVGK 27 (179)
T ss_dssp EEEEEESTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 429
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=38.78 E-value=11 Score=34.78 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=11.2
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
++.|.|++||||
T Consensus 2 ~I~l~G~~GsGK 13 (214)
T 1e4v_A 2 RIILLGAPVAGK 13 (214)
T ss_dssp EEEEEESTTSSH
T ss_pred EEEEECCCCCCH
Confidence 589999999999
No 430
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=38.77 E-value=12 Score=33.22 Aligned_cols=53 Identities=9% Similarity=0.146 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCCCEEE--EeccCCCCCHHHHHHHH---HHHHHhc--CCCeEEEEccCchh
Q 007337 505 QKQRVAIARALMMNPRILL--LDEATSALDAESEYLVQ---DAMDSLM--KGRTVLVIAHRLST 561 (607)
Q Consensus 505 QkQRialARAll~~~~Ill--LDE~TSaLD~~te~~i~---~~l~~~~--~~~TvI~ItHrl~~ 561 (607)
|..--.+.+..+++++.+| +| +-|+.+...+. +.+.... .+.-+++|....+.
T Consensus 80 ~~~~~~~~~~~~~~~d~~i~v~d----~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (195)
T 3bc1_A 80 LERFRSLTTAFFRDAMGFLLLFD----LTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL 139 (195)
T ss_dssp SGGGHHHHHHTTTTCSEEEEEEE----TTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred cHHHHHHHHHHHcCCCEEEEEEE----CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 3334456788888888655 44 22344433333 3333332 35566666666554
No 431
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=38.45 E-value=9.7 Score=33.57 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=13.2
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+.-+|+++|++|+||
T Consensus 17 ~~~~i~v~G~~~~GK 31 (183)
T 1moz_A 17 KELRILILGLDGAGK 31 (183)
T ss_dssp SCEEEEEEEETTSSH
T ss_pred CccEEEEECCCCCCH
Confidence 445899999999999
No 432
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=38.38 E-value=12 Score=33.43 Aligned_cols=12 Identities=58% Similarity=0.969 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 27 ki~v~G~~~~GK 38 (193)
T 2oil_A 27 KVVLIGESGVGK 38 (193)
T ss_dssp EEEEESSTTSSH
T ss_pred EEEEECcCCCCH
Confidence 689999999999
No 433
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=38.32 E-value=12 Score=32.98 Aligned_cols=12 Identities=50% Similarity=0.853 Sum_probs=11.3
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 20 ki~v~G~~~~GK 31 (183)
T 3kkq_A 20 KLVVVGDGGVGK 31 (183)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 434
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=38.32 E-value=12 Score=32.76 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHH---HHHHHHHhc-CCCeEEEEccCchhh
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYL---VQDAMDSLM-KGRTVLVIAHRLSTV 562 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~---i~~~l~~~~-~~~TvI~ItHrl~~l 562 (607)
|..--.+.+..+++++.+|+ ..+.-|+.+-.. ..+.+.... .+..+++|....+..
T Consensus 70 ~~~~~~~~~~~~~~~d~ii~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 129 (180)
T 2g6b_A 70 QERFRSVTHAYYRDAHALLL--LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129 (180)
T ss_dssp C--------CCGGGCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred cHHHHHHHHHHccCCCEEEE--EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence 33334556677788876554 112233443222 233344333 356677776666544
No 435
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=38.23 E-value=10 Score=25.77 Aligned_cols=8 Identities=100% Similarity=2.071 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 007337 13 GGGGGGGE 20 (607)
Q Consensus 13 ~~~~~~~~ 20 (607)
||||||++
T Consensus 29 ggggggge 36 (62)
T 2i7u_A 29 GGGGGGGE 36 (62)
T ss_dssp SSCSSSCH
T ss_pred CCCCchHH
Confidence 33344443
No 436
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=37.95 E-value=11 Score=33.51 Aligned_cols=13 Identities=46% Similarity=0.700 Sum_probs=12.1
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+|+|+|++|+||
T Consensus 24 ~~i~v~G~~~~GK 36 (195)
T 3pqc_A 24 GEVAFVGRSNVGK 36 (195)
T ss_dssp CEEEEEEBTTSSH
T ss_pred eEEEEECCCCCCH
Confidence 4799999999999
No 437
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=37.93 E-value=12 Score=33.00 Aligned_cols=12 Identities=50% Similarity=0.883 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 6 ki~v~G~~~~GK 17 (189)
T 4dsu_A 6 KLVVVGADGVGK 17 (189)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 438
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=37.81 E-value=12 Score=32.87 Aligned_cols=16 Identities=44% Similarity=0.781 Sum_probs=9.5
Q ss_pred EEEEEcCCCCcceEEE
Q 007337 427 KIALVGPSGGGKISIV 442 (607)
Q Consensus 427 ~vaiVG~sGsGKi~~V 442 (607)
+|+|+|++|+||-+++
T Consensus 10 ki~v~G~~~~GKssl~ 25 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVL 25 (183)
T ss_dssp EEEEECCCCC------
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999996655
No 439
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=37.76 E-value=12 Score=34.79 Aligned_cols=12 Identities=50% Similarity=1.066 Sum_probs=11.3
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
.+.|+|++||||
T Consensus 2 ~I~l~G~~GsGK 13 (223)
T 2xb4_A 2 NILIFGPNGSGK 13 (223)
T ss_dssp EEEEECCTTSCH
T ss_pred EEEEECCCCCCH
Confidence 589999999999
No 440
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=37.76 E-value=11 Score=33.36 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 3 ki~v~G~~~~GK 14 (190)
T 2cxx_A 3 TIIFAGRSNVGK 14 (190)
T ss_dssp EEEEEEBTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 441
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=37.70 E-value=11 Score=33.62 Aligned_cols=15 Identities=47% Similarity=0.510 Sum_probs=13.0
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+--+|+|+|++|+||
T Consensus 22 ~~~~i~v~G~~~~GK 36 (195)
T 1svi_A 22 GLPEIALAGRSNVGK 36 (195)
T ss_dssp CCCEEEEEEBTTSSH
T ss_pred CCCEEEEECCCCCCH
Confidence 346799999999999
No 442
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=37.59 E-value=13 Score=32.81 Aligned_cols=52 Identities=8% Similarity=0.049 Sum_probs=28.1
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHHH----HHHHHHHHhcCCCeEEEEccCchhhh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESEY----LVQDAMDSLMKGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te~----~i~~~l~~~~~~~TvI~ItHrl~~l~ 563 (607)
.+.+..+++++.+|+ ..+.-|+.+-. .+.+.+.+...+.-+++|....+...
T Consensus 68 ~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLI--CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123 (186)
T ss_dssp TTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHT
T ss_pred HHHHHhccCCcEEEE--EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccc
Confidence 444556777776554 11222444322 24445555545677777777766543
No 443
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=37.41 E-value=13 Score=32.76 Aligned_cols=13 Identities=46% Similarity=0.820 Sum_probs=11.8
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+|+|+|++|+||
T Consensus 19 ~ki~v~G~~~~GK 31 (187)
T 2a9k_A 19 HKVIMVGSGGVGK 31 (187)
T ss_dssp EEEEEECSTTSSH
T ss_pred eEEEEECCCCCCH
Confidence 3699999999999
No 444
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=37.21 E-value=13 Score=32.63 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.8
Q ss_pred EEEEEcCCCCcce
Q 007337 427 KIALVGPSGGGKI 439 (607)
Q Consensus 427 ~vaiVG~sGsGKi 439 (607)
+|+++|++|+||-
T Consensus 14 ki~v~G~~~~GKS 26 (181)
T 2efe_B 14 KLVLLGDVGAGKS 26 (181)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECcCCCCHH
Confidence 6899999999993
No 445
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=36.96 E-value=4.7 Score=38.67 Aligned_cols=20 Identities=25% Similarity=0.414 Sum_probs=14.8
Q ss_pred HHHHHHhcCCCEEEEeccCC
Q 007337 510 AIARALMMNPRILLLDEATS 529 (607)
Q Consensus 510 alARAll~~~~IllLDE~TS 529 (607)
.+.+|.-.+|.++++||.-.
T Consensus 95 ~~~~a~~~~~~vl~iDEid~ 114 (268)
T 2r62_A 95 LFETAKKQAPSIIFIDEIDA 114 (268)
T ss_dssp THHHHHHSCSCEEEESCGGG
T ss_pred HHHHHHhcCCeEEEEeChhh
Confidence 34555557899999999844
No 446
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=36.94 E-value=13 Score=33.48 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=27.2
Q ss_pred HHHHHhc--CCCEEEEeccCCCCCHHHH---HHHHHHHHHhc--CCCeEEEEccCchhhh
Q 007337 511 IARALMM--NPRILLLDEATSALDAESE---YLVQDAMDSLM--KGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 511 lARAll~--~~~IllLDE~TSaLD~~te---~~i~~~l~~~~--~~~TvI~ItHrl~~l~ 563 (607)
+.+..++ +..|+++| .| |..+- ..+.+.+.+.. .+.++|+|+|..+...
T Consensus 73 ~~~~~~~~~~~~i~v~d-v~---~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYS-IT---DRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp TGGGHHHHCSEEEEEEE-TT---CHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred HHHhhcccCCEEEEEEE-CC---CHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 3445554 55666666 22 33322 22333444432 4689999999987653
No 447
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=36.42 E-value=19 Score=40.61 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=14.0
Q ss_pred eeCCCEEEEEcCCCCcc
Q 007337 422 LLSGSKIALVGPSGGGK 438 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK 438 (607)
+++..-+.+.||+|+||
T Consensus 508 ~~~~~gvLl~GPPGtGK 524 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGK 524 (806)
T ss_dssp CCCCSCCEEESSTTSSH
T ss_pred CCCCceEEEecCCCCCc
Confidence 44556689999999999
No 448
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=36.38 E-value=13 Score=32.96 Aligned_cols=15 Identities=40% Similarity=0.550 Sum_probs=12.6
Q ss_pred EEEEEcCCCCcceEE
Q 007337 427 KIALVGPSGGGKISI 441 (607)
Q Consensus 427 ~vaiVG~sGsGKi~~ 441 (607)
+|+|+|++|+||-++
T Consensus 16 ki~vvG~~~~GKssL 30 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTN 30 (198)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999433
No 449
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=36.35 E-value=63 Score=33.46 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=44.9
Q ss_pred CCChhHHHHHHHHHHHh--cCCCEEEEeccCCCCCH------HH-H---HHHHHHHHHhcC--CCeEEEEccC-------
Q 007337 500 RLSGGQKQRVAIARALM--MNPRILLLDEATSALDA------ES-E---YLVQDAMDSLMK--GRTVLVIAHR------- 558 (607)
Q Consensus 500 ~LSGGQkQRialARAll--~~~~IllLDE~TSaLD~------~t-e---~~i~~~l~~~~~--~~TvI~ItHr------- 558 (607)
++|..+ ..+.+|.+. ++++++|+|..+.-.+. .+ . ..+.+.|+.+.+ ++++|+++|-
T Consensus 292 ~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r 369 (444)
T 2q6t_A 292 DLTLME--VRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEAR 369 (444)
T ss_dssp TCBHHH--HHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSS
T ss_pred CCCHHH--HHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence 455554 456677776 47999999999876543 11 1 234444544432 7899999881
Q ss_pred ------chh-------hhhcCEEEEEe
Q 007337 559 ------LST-------VQSADTVAVVS 572 (607)
Q Consensus 559 ------l~~-------l~~aD~Iivl~ 572 (607)
++. -..||.|+.|.
T Consensus 370 ~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 370 PNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp SSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred CCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 111 23699999995
No 450
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=36.32 E-value=14 Score=32.27 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHH---HHHHHHHhc-CCCeEEEEccCchh
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYL---VQDAMDSLM-KGRTVLVIAHRLST 561 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~---i~~~l~~~~-~~~TvI~ItHrl~~ 561 (607)
|..--.+.+..+++++.+|+ ..++-|..+... ..+.+.... .+..+++|....+.
T Consensus 74 ~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 132 (179)
T 1z0f_A 74 QERFRAVTRSYYRGAAGALM--VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADL 132 (179)
T ss_dssp GGGTCHHHHHHHHTCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred ChHhhhhHHHHhccCCEEEE--EEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 33334567788888876654 111233443333 333344433 35566777666554
No 451
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=36.24 E-value=14 Score=32.91 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 23 ki~vvG~~~~GK 34 (190)
T 3con_A 23 KLVVVGAGGVGK 34 (190)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECcCCCCH
Confidence 699999999999
No 452
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=36.16 E-value=13 Score=32.88 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCCEEE--EeccCCCCCHHHHH---HHHHHHHHhc-CCCeEEEEccCchhh
Q 007337 505 QKQRVAIARALMMNPRILL--LDEATSALDAESEY---LVQDAMDSLM-KGRTVLVIAHRLSTV 562 (607)
Q Consensus 505 QkQRialARAll~~~~Ill--LDE~TSaLD~~te~---~i~~~l~~~~-~~~TvI~ItHrl~~l 562 (607)
|..--.+.+..+++++.+| +| ++ |+.+-. ...+.+.... .+..+++|....+..
T Consensus 69 ~~~~~~~~~~~~~~~d~~i~v~d-~~---~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 128 (186)
T 2bme_A 69 QERFRSVTRSYYRGAAGALLVYD-IT---SRETYNALTNWLTDARMLASQNIVIILCGNKKDLD 128 (186)
T ss_dssp SGGGHHHHHTTSTTCSEEEEEEE-TT---CHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred cHHHHHHHHHHHhcCCEEEEEEE-Cc---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 3334456778888888554 44 22 233322 2333334332 456778887777654
No 453
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=36.07 E-value=16 Score=32.03 Aligned_cols=49 Identities=6% Similarity=0.124 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCEEE--EeccCCCCCHHHHH----HHHHHHHHhcCCCeEEEEccCchhh
Q 007337 510 AIARALMMNPRILL--LDEATSALDAESEY----LVQDAMDSLMKGRTVLVIAHRLSTV 562 (607)
Q Consensus 510 alARAll~~~~Ill--LDE~TSaLD~~te~----~i~~~l~~~~~~~TvI~ItHrl~~l 562 (607)
.+.+..+++++.++ +| .-|+.+-. .+.+.+.+...+.-+++|....+..
T Consensus 71 ~~~~~~~~~~d~~i~v~d----~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 125 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFS----LISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR 125 (182)
T ss_dssp TTGGGGGTTCSEEEEEEE----TTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH
T ss_pred hhHHhhccCCCEEEEEEE----CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh
Confidence 44556677777655 45 23444322 2444555544566777777766654
No 454
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=36.01 E-value=13 Score=33.02 Aligned_cols=47 Identities=9% Similarity=0.113 Sum_probs=26.3
Q ss_pred HHHHhcCCCEEE--EeccCCCCCHHHHH----HHHHHHHHhcCCCeEEEEccCchhh
Q 007337 512 ARALMMNPRILL--LDEATSALDAESEY----LVQDAMDSLMKGRTVLVIAHRLSTV 562 (607)
Q Consensus 512 ARAll~~~~Ill--LDE~TSaLD~~te~----~i~~~l~~~~~~~TvI~ItHrl~~l 562 (607)
.+..+++++.+| +| ++ |+++-. ...+.+.+..++..+|+|....+..
T Consensus 72 ~~~~~~~~~~~i~v~d-~~---~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 72 RPLSYPDSDAVLICFD-IS---RPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp GGGGCTTCSEEEEEEE-TT---CHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred HHhhcCCCcEEEEEEE-CC---CHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 344667777554 34 22 344322 2334455555577788887777655
No 455
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=35.97 E-value=14 Score=32.92 Aligned_cols=12 Identities=50% Similarity=0.742 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 24 ki~vvG~~~~GK 35 (189)
T 2gf9_A 24 KLLLIGNSSVGK 35 (189)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 456
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=35.81 E-value=13 Score=32.69 Aligned_cols=12 Identities=50% Similarity=0.678 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 8 ki~~~G~~~~GK 19 (181)
T 3t5g_A 8 KIAILGYRSVGK 19 (181)
T ss_dssp EEEEEESTTSSH
T ss_pred EEEEECcCCCCH
Confidence 689999999999
No 457
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=35.66 E-value=14 Score=32.96 Aligned_cols=52 Identities=10% Similarity=0.207 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhcCCCEEE--EeccCCCCCHHHHHHHHH---HHHHhcCCCeEEEEccCch
Q 007337 504 GQKQRVAIARALMMNPRILL--LDEATSALDAESEYLVQD---AMDSLMKGRTVLVIAHRLS 560 (607)
Q Consensus 504 GQkQRialARAll~~~~Ill--LDE~TSaLD~~te~~i~~---~l~~~~~~~TvI~ItHrl~ 560 (607)
||..--.+.+..+++++++| +| +-|+.+...+.+ .+.+.. +.-+++|....+
T Consensus 102 G~~~~~~~~~~~~~~~d~~i~v~D----~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D 158 (208)
T 3clv_A 102 GQERYASIVPLYYRGATCAIVVFD----ISNSNTLDRAKTWVNQLKISS-NYIIILVANKID 158 (208)
T ss_dssp TGGGCTTTHHHHHTTCSEEEEEEE----TTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTT
T ss_pred CcHHHHHHHHHHhcCCCEEEEEEE----CCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCC
Confidence 44444456778888887655 45 334544433333 333332 356666665544
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=35.51 E-value=13 Score=35.46 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=14.3
Q ss_pred eeCCCEEEEEcCCCCcc
Q 007337 422 LLSGSKIALVGPSGGGK 438 (607)
Q Consensus 422 i~~Ge~vaiVG~sGsGK 438 (607)
.+++..|+|.|..||||
T Consensus 21 ~~~~~~I~ieG~~GsGK 37 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGK 37 (263)
T ss_dssp --CCEEEEEECSTTSSH
T ss_pred ccCceEEEEECCCCCCH
Confidence 35788999999999999
No 459
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=35.45 E-value=14 Score=33.21 Aligned_cols=12 Identities=50% Similarity=0.894 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 16 ki~v~G~~~~GK 27 (206)
T 2bov_A 16 KVIMVGSGGVGK 27 (206)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 460
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=35.37 E-value=14 Score=32.84 Aligned_cols=56 Identities=11% Similarity=0.173 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHHHhcCCCEEEE--eccCCCCCHHHHHH---HHHHHHHhc--CCCeEEEEccCchh
Q 007337 502 SGGQKQRVAIARALMMNPRILLL--DEATSALDAESEYL---VQDAMDSLM--KGRTVLVIAHRLST 561 (607)
Q Consensus 502 SGGQkQRialARAll~~~~IllL--DE~TSaLD~~te~~---i~~~l~~~~--~~~TvI~ItHrl~~ 561 (607)
+|-++-+..+.+..+++++.+|+ | ++ |..+-.. ..+.+.+.. .+..+|+|....+.
T Consensus 77 ~G~~~~~~~~~~~~~~~~d~iilv~D-~~---~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 77 AGQERFRKSMVQHYYRNVHAVVFVYD-MT---NMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp CCSHHHHTTTHHHHHTTCCEEEEEEE-TT---CHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred CCchhhhhhhhHHHhcCCCEEEEEEE-Cc---CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 34444444778888888876664 4 22 3333222 223333332 35566666666554
No 461
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=35.23 E-value=13 Score=35.78 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=21.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhcC--CCeEEEEccCchhh
Q 007337 527 ATSALDAESEYLVQDAMDSLMK--GRTVLVIAHRLSTV 562 (607)
Q Consensus 527 ~TSaLD~~te~~i~~~l~~~~~--~~TvI~ItHrl~~l 562 (607)
||||.+..+-..+.+.+.+... .++..+-.|..+.+
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 181 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDI 181 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHH
Confidence 8999988876666666655432 23334445555443
No 462
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=35.20 E-value=14 Score=32.59 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=13.2
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++.=+|+++|++|+||
T Consensus 16 ~~~~~i~v~G~~~~GK 31 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGK 31 (186)
T ss_dssp -CCEEEEEECSTTSSH
T ss_pred CCeeEEEEECCCCCCH
Confidence 3445799999999999
No 463
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=35.13 E-value=12 Score=38.49 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=16.3
Q ss_pred EeeCCCEEEEEcCCCCcc
Q 007337 421 KLLSGSKIALVGPSGGGK 438 (607)
Q Consensus 421 ~i~~Ge~vaiVG~sGsGK 438 (607)
.++.|.+++|||++|+||
T Consensus 18 ~i~~~~kvgIVG~pnvGK 35 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGK 35 (396)
T ss_dssp CSSSCCCEEEECCSSSSH
T ss_pred hccCCCEEEEECCCCCCH
Confidence 467889999999999999
No 464
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=35.13 E-value=14 Score=33.71 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=12.0
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+++++|++|+||
T Consensus 13 ~~i~~~G~~g~GK 25 (218)
T 1nrj_B 13 PSIIIAGPQNSGK 25 (218)
T ss_dssp CEEEEECSTTSSH
T ss_pred CEEEEECCCCCCH
Confidence 4789999999999
No 465
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=34.50 E-value=14 Score=38.48 Aligned_cols=13 Identities=46% Similarity=0.670 Sum_probs=12.0
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+++|||++|+||
T Consensus 181 ~kvaivG~~gvGK 193 (439)
T 1mky_A 181 IKVAIVGRPNVGK 193 (439)
T ss_dssp EEEEEECSTTSSH
T ss_pred ceEEEECCCCCCH
Confidence 3799999999999
No 466
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=34.43 E-value=13 Score=35.72 Aligned_cols=12 Identities=50% Similarity=0.769 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|||++|+||
T Consensus 10 ~I~vvG~~g~GK 21 (274)
T 3t5d_A 10 TLMVVGESGLGK 21 (274)
T ss_dssp EEEEEECTTSSH
T ss_pred EEEEECCCCCCH
Confidence 589999999999
No 467
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=34.28 E-value=14 Score=33.06 Aligned_cols=12 Identities=50% Similarity=0.919 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 25 ki~vvG~~~~GK 36 (192)
T 2fg5_A 25 KVCLLGDTGVGK 36 (192)
T ss_dssp EEEEEECTTSSH
T ss_pred EEEEECcCCCCH
Confidence 689999999999
No 468
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=34.22 E-value=1.6e+02 Score=32.37 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=14.5
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
.|+-+.+++|+||||
T Consensus 240 ~g~dvlv~apTGSGK 254 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGK 254 (673)
T ss_dssp TTCEEEECCCTTTTT
T ss_pred cCCeEEEEeCCCCCH
Confidence 799999999999999
No 469
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=34.10 E-value=15 Score=32.71 Aligned_cols=12 Identities=42% Similarity=0.916 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 23 ki~vvG~~~vGK 34 (187)
T 3c5c_A 23 NLAILGRRGAGK 34 (187)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCCcH
Confidence 799999999999
No 470
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=33.98 E-value=16 Score=32.67 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=11.8
Q ss_pred EEEEEcCCCCcce
Q 007337 427 KIALVGPSGGGKI 439 (607)
Q Consensus 427 ~vaiVG~sGsGKi 439 (607)
+|+|+|++|+||-
T Consensus 23 ki~v~G~~~~GKS 35 (191)
T 2a5j_A 23 KYIIIGDTGVGKS 35 (191)
T ss_dssp EEEEESSTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 6899999999993
No 471
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=33.92 E-value=12 Score=32.74 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=11.9
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
=+|+++|++|+||
T Consensus 8 ~ki~~vG~~~vGK 20 (178)
T 2iwr_A 8 LRLGVLGDARSGK 20 (178)
T ss_dssp EEEEEECCGGGCH
T ss_pred eEEEEECCCCCCH
Confidence 3689999999999
No 472
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=33.87 E-value=14 Score=33.56 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCEEEEeccCCCCCHHHHH---HHHHHHHHhc-CCCeEEEEccCchhh
Q 007337 508 RVAIARALMMNPRILLLDEATSALDAESEY---LVQDAMDSLM-KGRTVLVIAHRLSTV 562 (607)
Q Consensus 508 RialARAll~~~~IllLDE~TSaLD~~te~---~i~~~l~~~~-~~~TvI~ItHrl~~l 562 (607)
--.+.+..+++++.+|+= .+.-|..+-. ...+.+.+.. .+..+|+|....+..
T Consensus 88 ~~~~~~~~~~~~d~~i~v--~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 144 (201)
T 2ew1_A 88 FRSITQSYYRSANALILT--YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA 144 (201)
T ss_dssp GHHHHGGGSTTCSEEEEE--EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred HHHHHHHHHhcCCEEEEE--EECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 345677888888876641 1122444332 2333344432 356677777776654
No 473
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=33.67 E-value=16 Score=32.93 Aligned_cols=12 Identities=50% Similarity=0.742 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 10 ki~v~G~~~~GK 21 (203)
T 1zbd_A 10 KILIIGNSSVGK 21 (203)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 474
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=33.61 E-value=16 Score=32.98 Aligned_cols=12 Identities=50% Similarity=0.869 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 10 ki~v~G~~~~GK 21 (207)
T 1vg8_A 10 KVIILGDSGVGK 21 (207)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECcCCCCH
Confidence 689999999999
No 475
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=33.59 E-value=15 Score=35.72 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=11.8
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
..|.|+|++||||
T Consensus 3 ~~I~l~G~~GsGK 15 (301)
T 1ltq_A 3 KIILTIGCPGSGK 15 (301)
T ss_dssp EEEEEECCTTSSH
T ss_pred eEEEEECCCCCCH
Confidence 4689999999999
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=33.39 E-value=16 Score=32.63 Aligned_cols=51 Identities=6% Similarity=0.091 Sum_probs=29.2
Q ss_pred HHHHHHhcCCCEEEEeccCCCCCHHHH----HHHHHHHHHhcCCCeEEEEccCchhh
Q 007337 510 AIARALMMNPRILLLDEATSALDAESE----YLVQDAMDSLMKGRTVLVIAHRLSTV 562 (607)
Q Consensus 510 alARAll~~~~IllLDE~TSaLD~~te----~~i~~~l~~~~~~~TvI~ItHrl~~l 562 (607)
.+.+..+++++.+|+ ..+.-|.++- ..+.+.+.+...+.-+|+|....+..
T Consensus 86 ~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 140 (194)
T 3reg_A 86 RLRPLSYADSDVVLL--CFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140 (194)
T ss_dssp TTGGGGCTTCSEEEE--EEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC
T ss_pred HHhHhhccCCcEEEE--EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 455667778877664 1122344432 33444555555567788887776654
No 477
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=33.24 E-value=16 Score=32.48 Aligned_cols=12 Identities=58% Similarity=0.919 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 18 ki~v~G~~~~GK 29 (196)
T 3tkl_A 18 KLLLIGDSGVGK 29 (196)
T ss_dssp EEEEECSTTSSH
T ss_pred EEEEECcCCCCH
Confidence 599999999999
No 478
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=33.20 E-value=16 Score=33.24 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=12.1
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+|+|+|++|+||
T Consensus 8 ~ki~vvG~~~~GK 20 (214)
T 2fh5_B 8 RAVLFVGLCDSGK 20 (214)
T ss_dssp CEEEEECSTTSSH
T ss_pred CEEEEECCCCCCH
Confidence 4799999999999
No 479
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=33.12 E-value=2.6e+02 Score=27.81 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=58.1
Q ss_pred eCCCEEEEEc-CCCCcc-----------------eEEEccCCCcccccHHHHhhcCCCCCCCHHHHHHHHHH------cC
Q 007337 423 LSGSKIALVG-PSGGGK-----------------ISIVSQEPVLFNCSIEENIAYGCDGKASSADIENAAKM------AN 478 (607)
Q Consensus 423 ~~Ge~vaiVG-~sGsGK-----------------i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~i~~al~~------a~ 478 (607)
++++.++|++ ..|+|| +.+|.=|+ .+++.. .+|.+...+-.++....+. +.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D~---~~~l~~--~lg~~~~~~l~d~l~~~~~~~~~~~~~ 215 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIEQ---CGTTDV--FFQAEGNATMSDVIYSLKSRKANLLLK 215 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECCT---TCCHHH--HCCCSCSCCHHHHHHHHHSCCSCHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECCC---CCCHHH--HcCCCCCCCHHHHHhhhhccccccccc
Confidence 5678899997 788999 77776662 234433 3443223443333322221 22
Q ss_pred chHHHHhCCccccccccC----CCCCCChhHHHHHHHHHHHh--cCCCEEEEeccCCCCCHHHH
Q 007337 479 AHDFISNFPEKYQTFVGE----RGVRLSGGQKQRVAIARALM--MNPRILLLDEATSALDAESE 536 (607)
Q Consensus 479 l~~~i~~lp~G~~T~ige----~G~~LSGGQkQRialARAll--~~~~IllLDE~TSaLD~~te 536 (607)
+.+.+..-|.|++-.-+. ....++..+.++ +.+.+. .+-|++|+|=| .+++..+.
T Consensus 216 l~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--ll~~l~~~~~yD~VIID~p-~~~~~~~~ 276 (373)
T 3fkq_A 216 LESCIKQSQEGVSYFSSTKVALDILEISYADIDT--LIGNIQGMDNYDEIIVDLP-FSLEIEKL 276 (373)
T ss_dssp HHHTCEECTTSCEECCCCSSGGGGGGCCHHHHHH--HHHHHHHTSCCSEEEEECC-CCCCHHHH
T ss_pred HHHHhhcCCCCEEEecCCCChHhHHhCCHHHHHH--HHHHHHhcCCCCEEEEeCC-CCCCHHHH
Confidence 334444445555543322 123345555444 345554 78999999988 66665443
No 480
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=33.06 E-value=16 Score=32.63 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHH---HHHHHHHhc-CCCeEEEEccCchhh
Q 007337 505 QKQRVAIARALMMNPRILLLDEATSALDAESEYL---VQDAMDSLM-KGRTVLVIAHRLSTV 562 (607)
Q Consensus 505 QkQRialARAll~~~~IllLDE~TSaLD~~te~~---i~~~l~~~~-~~~TvI~ItHrl~~l 562 (607)
|..--.+.+..+++++.+|+ ..+.-|..+... ..+.+.... .+..+++|....+..
T Consensus 85 ~~~~~~~~~~~~~~~d~iil--V~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~ 144 (192)
T 2il1_A 85 QERFNSITSAYYRSAKGIIL--VYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 144 (192)
T ss_dssp SGGGHHHHHHHHHHCSEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred cHHHHHHHHHHhcCCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 33344567777888877665 222233443322 234444443 356677777776654
No 481
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=32.91 E-value=15 Score=32.91 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=13.7
Q ss_pred eCCCEEEEEcCCCCcc
Q 007337 423 LSGSKIALVGPSGGGK 438 (607)
Q Consensus 423 ~~Ge~vaiVG~sGsGK 438 (607)
++.-+|+|+|++|+||
T Consensus 27 ~~~~ki~v~G~~~vGK 42 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGK 42 (192)
T ss_dssp TSCEEEEEEESTTSSH
T ss_pred CCccEEEEECCCCCCH
Confidence 3456799999999999
No 482
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=32.68 E-value=16 Score=33.75 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=12.0
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+|+|+|++|+||
T Consensus 30 ~kI~vvG~~~vGK 42 (228)
T 2qu8_A 30 KTIILSGAPNVGK 42 (228)
T ss_dssp EEEEEECSTTSSH
T ss_pred CEEEEECCCCCCH
Confidence 4799999999999
No 483
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=32.67 E-value=16 Score=32.67 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHhcCCCEEEEeccCCCCCHHHHHH---HHHHHHHhc-CCCeEEEEccCchh
Q 007337 503 GGQKQRVAIARALMMNPRILLLDEATSALDAESEYL---VQDAMDSLM-KGRTVLVIAHRLST 561 (607)
Q Consensus 503 GGQkQRialARAll~~~~IllLDE~TSaLD~~te~~---i~~~l~~~~-~~~TvI~ItHrl~~ 561 (607)
+||.+--.+.+..+++++++|+ ..+.-|..+-.. +.+.+.... .+.-+|+|....+.
T Consensus 80 ~G~~~~~~~~~~~~~~~d~~i~--v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 140 (191)
T 3dz8_A 80 AGQERYRTITTAYYRGAMGFIL--MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140 (191)
T ss_dssp HHHHHCHHHHHHHHTTCCEEEE--EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred CChHHHHHHHHHHHccCCEEEE--EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 4666666788888999887765 112224443332 333344332 35667777666554
No 484
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=32.65 E-value=16 Score=32.48 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=12.9
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+.=+|+++|++|+||
T Consensus 15 ~~~~i~v~G~~~~GK 29 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGK 29 (187)
T ss_dssp SCEEEEEEESTTSSH
T ss_pred CccEEEEECCCCCCH
Confidence 345799999999999
No 485
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=32.65 E-value=17 Score=32.63 Aligned_cols=13 Identities=46% Similarity=0.774 Sum_probs=12.0
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+|+|+|++|+||
T Consensus 29 ~ki~v~G~~~vGK 41 (196)
T 2atv_A 29 VKLAIFGRAGVGK 41 (196)
T ss_dssp EEEEEECCTTSSH
T ss_pred eEEEEECCCCCCH
Confidence 4799999999999
No 486
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=32.62 E-value=17 Score=32.73 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=12.6
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+-=+|+|+|++|+||
T Consensus 27 ~~~ki~v~G~~~~GK 41 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGK 41 (199)
T ss_dssp -CEEEEEESSTTSSH
T ss_pred CCeEEEEECcCCCCH
Confidence 445799999999999
No 487
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=32.60 E-value=17 Score=32.96 Aligned_cols=14 Identities=57% Similarity=0.677 Sum_probs=12.4
Q ss_pred CCEEEEEcCCCCcc
Q 007337 425 GSKIALVGPSGGGK 438 (607)
Q Consensus 425 Ge~vaiVG~sGsGK 438 (607)
.=+|+|+|++|+||
T Consensus 20 ~~~i~v~G~~~~GK 33 (213)
T 3cph_A 20 IMKILLIGDSGVGK 33 (213)
T ss_dssp CEEEEEECSTTSSH
T ss_pred ceEEEEECCCCCCH
Confidence 34799999999999
No 488
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=32.53 E-value=17 Score=32.27 Aligned_cols=13 Identities=54% Similarity=0.800 Sum_probs=11.9
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+|+|+|++|+||
T Consensus 16 ~~i~v~G~~~~GK 28 (195)
T 1x3s_A 16 LKILIIGESGVGK 28 (195)
T ss_dssp EEEEEECSTTSSH
T ss_pred eEEEEECCCCCCH
Confidence 3799999999999
No 489
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=32.50 E-value=16 Score=32.58 Aligned_cols=13 Identities=23% Similarity=0.442 Sum_probs=12.0
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
=+|+|+|++|+||
T Consensus 22 ~ki~v~G~~~~GK 34 (190)
T 2h57_A 22 VHVLCLGLDNSGK 34 (190)
T ss_dssp EEEEEEECTTSSH
T ss_pred cEEEEECCCCCCH
Confidence 4799999999999
No 490
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=32.33 E-value=17 Score=32.43 Aligned_cols=13 Identities=23% Similarity=0.534 Sum_probs=12.0
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+|+|+|++|+||
T Consensus 18 ~ki~v~G~~~~GK 30 (199)
T 4bas_A 18 LQVVMCGLDNSGK 30 (199)
T ss_dssp EEEEEECCTTSCH
T ss_pred cEEEEECCCCCCH
Confidence 4789999999999
No 491
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=32.27 E-value=16 Score=32.65 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=11.9
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
=+|+|+|++|+||
T Consensus 9 ~ki~vvG~~~~GK 21 (199)
T 2gf0_A 9 YRVVVFGAGGVGK 21 (199)
T ss_dssp EEEEEEECTTSSH
T ss_pred eEEEEECCCCCcH
Confidence 3799999999999
No 492
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=32.26 E-value=16 Score=33.68 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=12.0
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
-+++|+|.+|+||
T Consensus 39 ~~i~ivG~~gvGK 51 (226)
T 2hf9_A 39 VAFDFMGAIGSGK 51 (226)
T ss_dssp EEEEEEESTTSSH
T ss_pred eEEEEEcCCCCCH
Confidence 4799999999999
No 493
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=32.18 E-value=17 Score=32.59 Aligned_cols=48 Identities=8% Similarity=0.061 Sum_probs=26.7
Q ss_pred HHHHhcCCCEEE--EeccCCCCCHHHHH----HHHHHHHHhcCCCeEEEEccCchhhh
Q 007337 512 ARALMMNPRILL--LDEATSALDAESEY----LVQDAMDSLMKGRTVLVIAHRLSTVQ 563 (607)
Q Consensus 512 ARAll~~~~Ill--LDE~TSaLD~~te~----~i~~~l~~~~~~~TvI~ItHrl~~l~ 563 (607)
.+..+++++.+| +| ++ |+.+-. .+.+.+.+...+..+|+|....+...
T Consensus 85 ~~~~~~~~~~~i~v~d-~~---~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 85 RPLCYTNTDIFLLCFS-VV---SPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp GGGGGTTCSEEEEEEE-TT---CHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred hHhhcCCCcEEEEEEE-CC---CHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 445677777554 45 22 344322 23444555545677788877766543
No 494
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=32.17 E-value=18 Score=32.52 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=12.6
Q ss_pred EEEEEcCCCCcceEE
Q 007337 427 KIALVGPSGGGKISI 441 (607)
Q Consensus 427 ~vaiVG~sGsGKi~~ 441 (607)
+|+|+|++|+||-++
T Consensus 35 ki~vvG~~~~GKSsl 49 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCL 49 (199)
T ss_dssp EEEEECCTTSCCTTT
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999433
No 495
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=32.17 E-value=16 Score=33.02 Aligned_cols=12 Identities=58% Similarity=0.913 Sum_probs=11.5
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 10 ki~v~G~~~~GK 21 (206)
T 2bcg_Y 10 KLLLIGNSGVGK 21 (206)
T ss_dssp EEEEEESTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 496
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=32.14 E-value=16 Score=32.94 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=12.8
Q ss_pred CCCEEEEEcCCCCcc
Q 007337 424 SGSKIALVGPSGGGK 438 (607)
Q Consensus 424 ~Ge~vaiVG~sGsGK 438 (607)
+.=+|+|+|++|+||
T Consensus 23 ~~~ki~vvG~~~~GK 37 (201)
T 3oes_A 23 RYRKVVILGYRCVGK 37 (201)
T ss_dssp CEEEEEEEESTTSSH
T ss_pred CcEEEEEECCCCcCH
Confidence 334799999999999
No 497
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=32.12 E-value=17 Score=33.18 Aligned_cols=12 Identities=58% Similarity=0.949 Sum_probs=11.4
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+|+|++|+||
T Consensus 13 ki~vvG~~~~GK 24 (218)
T 4djt_A 13 KICLIGDGGVGK 24 (218)
T ss_dssp EEEEECCTTSSH
T ss_pred EEEEECCCCCCH
Confidence 689999999999
No 498
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=32.09 E-value=17 Score=32.27 Aligned_cols=13 Identities=38% Similarity=0.547 Sum_probs=11.9
Q ss_pred CEEEEEcCCCCcc
Q 007337 426 SKIALVGPSGGGK 438 (607)
Q Consensus 426 e~vaiVG~sGsGK 438 (607)
=+|+|+|++|+||
T Consensus 23 ~ki~v~G~~~~GK 35 (188)
T 1zd9_A 23 MELTLVGLQYSGK 35 (188)
T ss_dssp EEEEEECSTTSSH
T ss_pred cEEEEECCCCCCH
Confidence 4689999999999
No 499
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=31.70 E-value=16 Score=34.68 Aligned_cols=55 Identities=15% Similarity=0.254 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCCEEEE-eccCCCCCHHHHHHHHHHHHHhc----CCCeEEEEccCchhh
Q 007337 506 KQRVAIARALMMNPRILLL-DEATSALDAESEYLVQDAMDSLM----KGRTVLVIAHRLSTV 562 (607)
Q Consensus 506 kQRialARAll~~~~IllL-DE~TSaLD~~te~~i~~~l~~~~----~~~TvI~ItHrl~~l 562 (607)
++....++.-+++++.+|+ =+++. ++...+ .+.+.+.+.+ ....+++++|..+..
T Consensus 93 ~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~-~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~ 152 (260)
T 2xtp_A 93 KEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQ-QAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152 (260)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEETTC-CCHHHH-HHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred HHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHH-HHHHHHHHHhCchhhccEEEEEEcccccC
Confidence 3345555666778875553 33343 555443 3334454442 346888899776543
No 500
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=31.64 E-value=16 Score=33.10 Aligned_cols=12 Identities=42% Similarity=0.720 Sum_probs=0.0
Q ss_pred EEEEEcCCCCcc
Q 007337 427 KIALVGPSGGGK 438 (607)
Q Consensus 427 ~vaiVG~sGsGK 438 (607)
+|+++|++|+||
T Consensus 27 ki~vvG~~~~GK 38 (207)
T 2fv8_A 27 KLVVVGDGACGK 38 (207)
T ss_dssp EEEEEECTTSSH
T ss_pred EEEEECcCCCCH
Done!