Query 007338
Match_columns 607
No_of_seqs 189 out of 2109
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 22:13:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 99.9 4.2E-24 9.1E-29 234.0 36.8 153 433-603 317-475 (620)
2 PRK10115 protease 2; Provision 99.9 1.4E-22 3E-27 223.1 40.4 149 436-604 370-527 (686)
3 PRK03629 tolB translocation pr 99.9 2.8E-19 6.1E-24 188.2 29.7 235 3-341 177-413 (429)
4 PRK04043 tolB translocation pr 99.9 2.5E-19 5.4E-24 186.4 28.9 232 4-334 168-402 (419)
5 PRK01029 tolB translocation pr 99.9 2E-19 4.4E-24 188.5 27.9 236 4-342 164-411 (428)
6 PRK05137 tolB translocation pr 99.8 9E-19 2E-23 185.4 29.2 214 4-373 181-397 (435)
7 PRK02889 tolB translocation pr 99.8 9E-18 2E-22 177.0 29.0 227 5-333 176-404 (427)
8 PRK04792 tolB translocation pr 99.8 9.7E-18 2.1E-22 177.2 29.3 215 4-373 197-413 (448)
9 PRK01029 tolB translocation pr 99.8 1.3E-17 2.9E-22 174.8 29.5 263 34-413 140-413 (428)
10 PRK04922 tolB translocation pr 99.8 1.3E-17 2.7E-22 176.5 28.4 234 5-342 184-419 (433)
11 PRK00178 tolB translocation pr 99.8 1.5E-17 3.3E-22 176.3 29.1 226 6-333 180-407 (430)
12 PRK05137 tolB translocation pr 99.8 1.6E-16 3.5E-21 168.2 29.0 253 42-469 165-421 (435)
13 PRK03629 tolB translocation pr 99.8 4E-16 8.6E-21 164.4 30.0 229 43-373 164-394 (429)
14 PRK04043 tolB translocation pr 99.8 1.1E-16 2.3E-21 166.8 24.4 206 5-306 213-419 (419)
15 PRK01742 tolB translocation pr 99.8 5.3E-16 1.1E-20 163.8 28.0 226 5-341 184-411 (429)
16 PF00930 DPPIV_N: Dipeptidyl p 99.7 3.5E-16 7.7E-21 160.7 25.2 308 3-452 21-353 (353)
17 PRK02889 tolB translocation pr 99.7 2E-15 4.3E-20 159.2 29.7 226 43-373 164-391 (427)
18 PRK04922 tolB translocation pr 99.7 2E-15 4.4E-20 159.7 29.1 231 42-373 167-399 (433)
19 PRK00178 tolB translocation pr 99.7 5.8E-15 1.2E-19 156.6 30.0 232 41-373 161-394 (430)
20 PRK04792 tolB translocation pr 99.7 1.8E-15 3.9E-20 160.0 24.6 203 5-308 242-446 (448)
21 COG4946 Uncharacterized protei 99.7 2E-13 4.3E-18 134.0 30.9 374 5-452 59-514 (668)
22 TIGR02800 propeller_TolB tol-p 99.7 4.8E-14 1E-18 149.2 28.2 214 5-373 170-385 (417)
23 KOG2281 Dipeptidyl aminopeptid 99.7 2.4E-14 5.1E-19 145.9 23.9 178 404-606 540-732 (867)
24 PRK01742 tolB translocation pr 99.6 1.9E-13 4E-18 144.5 29.5 245 42-470 168-414 (429)
25 COG1770 PtrB Protease II [Amin 99.6 2.8E-11 6.1E-16 125.7 37.3 147 437-604 373-530 (682)
26 TIGR02800 propeller_TolB tol-p 99.6 2.5E-12 5.4E-17 136.1 29.2 252 40-469 153-406 (417)
27 COG0823 TolB Periplasmic compo 99.6 4.4E-13 9.5E-18 138.7 22.4 217 3-372 171-389 (425)
28 PF14583 Pectate_lyase22: Olig 99.5 2.9E-11 6.2E-16 120.1 29.9 345 12-460 14-383 (386)
29 COG0823 TolB Periplasmic compo 99.5 1.3E-12 2.9E-17 135.1 18.6 164 5-256 218-384 (425)
30 PF00930 DPPIV_N: Dipeptidyl p 99.5 2.1E-11 4.6E-16 125.3 26.2 292 39-471 1-327 (353)
31 KOG2100 Dipeptidyl aminopeptid 99.4 2.3E-09 5E-14 119.2 34.3 237 323-604 365-611 (755)
32 PF14583 Pectate_lyase22: Olig 99.3 1.3E-09 2.8E-14 108.4 23.8 293 5-375 60-373 (386)
33 TIGR03866 PQQ_ABC_repeats PQQ- 99.0 7.5E-07 1.6E-11 89.3 30.4 245 6-371 12-267 (300)
34 COG4946 Uncharacterized protei 98.9 9.9E-07 2.2E-11 87.7 26.8 297 6-373 207-509 (668)
35 PF02897 Peptidase_S9_N: Proly 98.9 1.1E-06 2.4E-11 92.8 29.3 129 34-219 127-262 (414)
36 COG1505 Serine proteases of th 98.9 1.4E-08 2.9E-13 104.7 13.9 146 436-603 349-502 (648)
37 PRK13616 lipoprotein LpqB; Pro 98.8 3.4E-07 7.4E-12 99.1 20.2 129 18-193 336-466 (591)
38 PF10282 Lactonase: Lactonase, 98.8 7.1E-06 1.5E-10 84.2 27.6 92 5-104 13-104 (345)
39 PRK11028 6-phosphogluconolacto 98.8 2.2E-05 4.8E-10 80.2 30.8 85 5-104 12-97 (330)
40 TIGR03866 PQQ_ABC_repeats PQQ- 98.7 5.4E-05 1.2E-09 75.7 33.0 270 61-464 10-283 (300)
41 COG2706 3-carboxymuconate cycl 98.7 5.4E-05 1.2E-09 73.6 30.0 304 5-410 16-330 (346)
42 PF08662 eIF2A: Eukaryotic tra 98.6 1.7E-06 3.7E-11 80.6 16.7 148 32-255 7-157 (194)
43 PF08662 eIF2A: Eukaryotic tra 98.6 2.4E-06 5.2E-11 79.6 16.9 145 6-223 40-185 (194)
44 KOG2237 Predicted serine prote 98.5 9.5E-07 2.1E-11 91.8 11.7 149 437-604 392-552 (712)
45 KOG0973 Histone transcription 98.4 1.4E-05 3.1E-10 87.4 19.6 59 176-254 173-232 (942)
46 KOG0305 Anaphase promoting com 98.4 4E-05 8.6E-10 79.4 21.6 251 2-373 194-452 (484)
47 KOG0291 WD40-repeat-containing 98.4 0.00036 7.7E-09 73.8 28.1 250 4-373 285-541 (893)
48 cd00200 WD40 WD40 domain, foun 98.3 0.0012 2.6E-08 64.5 28.6 195 32-333 11-208 (289)
49 cd00200 WD40 WD40 domain, foun 98.2 0.00085 1.8E-08 65.6 25.9 242 6-371 32-280 (289)
50 KOG2314 Translation initiation 98.2 0.001 2.2E-08 68.2 25.6 105 33-193 213-324 (698)
51 PRK11028 6-phosphogluconolacto 98.2 0.0049 1.1E-07 62.9 31.7 50 44-104 2-52 (330)
52 KOG0318 WD40 repeat stress pro 98.2 0.0041 8.8E-08 63.5 29.4 152 32-224 192-357 (603)
53 KOG0271 Notchless-like WD40 re 98.2 0.00012 2.5E-09 71.4 17.1 50 32-96 159-210 (480)
54 COG2706 3-carboxymuconate cycl 98.2 0.0091 2E-07 58.5 31.5 134 300-469 192-332 (346)
55 KOG0279 G protein beta subunit 98.2 0.00046 1E-08 64.8 19.8 69 20-104 55-123 (315)
56 COG3458 Acetyl esterase (deace 98.1 6.3E-06 1.4E-10 77.1 6.8 103 479-604 53-179 (321)
57 PF10282 Lactonase: Lactonase, 98.1 0.0073 1.6E-07 62.0 30.1 236 176-469 88-333 (345)
58 PRK13616 lipoprotein LpqB; Pro 98.1 6.2E-05 1.3E-09 81.8 15.1 87 3-104 377-465 (591)
59 KOG0272 U4/U6 small nuclear ri 98.1 0.00053 1.2E-08 67.8 19.8 195 32-329 177-374 (459)
60 TIGR02658 TTQ_MADH_Hv methylam 98.1 0.0042 9E-08 62.9 26.3 90 5-104 27-122 (352)
61 KOG1407 WD40 repeat protein [F 98.0 0.0023 5.1E-08 59.6 22.0 225 32-372 22-251 (313)
62 PF05448 AXE1: Acetyl xylan es 98.0 9.2E-06 2E-10 81.6 6.4 102 480-604 54-178 (320)
63 KOG2055 WD40 repeat protein [G 98.0 0.00086 1.9E-08 67.1 19.7 119 30-220 257-377 (514)
64 KOG2139 WD40 repeat protein [G 98.0 0.00014 3E-09 70.5 13.6 68 24-104 189-256 (445)
65 KOG0293 WD40 repeat-containing 98.0 0.00056 1.2E-08 67.5 17.2 230 32-329 271-512 (519)
66 KOG4497 Uncharacterized conser 98.0 0.00013 2.8E-09 69.8 12.5 131 35-254 13-146 (447)
67 PF02239 Cytochrom_D1: Cytochr 97.9 0.006 1.3E-07 62.9 25.7 249 29-373 76-336 (369)
68 KOG2055 WD40 repeat protein [G 97.9 0.00024 5.3E-09 70.9 14.6 157 7-254 282-448 (514)
69 KOG0315 G-protein beta subunit 97.9 0.0027 5.9E-08 58.8 20.0 134 5-219 61-199 (311)
70 KOG0273 Beta-transducin family 97.8 0.0026 5.7E-08 63.9 19.7 233 32-373 278-514 (524)
71 KOG0318 WD40 repeat stress pro 97.8 0.017 3.7E-07 59.1 25.0 68 246-330 195-265 (603)
72 PF07676 PD40: WD40-like Beta 97.8 5.1E-05 1.1E-09 50.2 5.1 38 22-66 2-39 (39)
73 TIGR02658 TTQ_MADH_Hv methylam 97.8 0.063 1.4E-06 54.4 31.7 121 41-223 11-142 (352)
74 KOG0293 WD40 repeat-containing 97.7 0.00099 2.1E-08 65.8 14.6 59 32-103 226-286 (519)
75 KOG1446 Histone H3 (Lys4) meth 97.7 0.051 1.1E-06 52.3 27.0 230 32-372 16-252 (311)
76 PF08450 SGL: SMP-30/Gluconola 97.7 0.0091 2E-07 58.1 21.8 197 34-333 3-214 (246)
77 KOG0266 WD40 repeat-containing 97.7 0.0051 1.1E-07 65.6 21.1 114 32-222 161-281 (456)
78 KOG1407 WD40 repeat protein [F 97.7 0.0047 1E-07 57.7 17.6 58 32-104 108-165 (313)
79 KOG0263 Transcription initiati 97.7 0.0016 3.4E-08 69.5 16.2 212 10-327 433-646 (707)
80 PF00326 Peptidase_S9: Prolyl 97.7 2.4E-05 5.3E-10 74.4 2.6 59 546-604 5-67 (213)
81 PF02239 Cytochrom_D1: Cytochr 97.6 0.014 3.1E-07 60.1 22.7 105 43-220 5-111 (369)
82 TIGR02171 Fb_sc_TIGR02171 Fibr 97.6 0.0033 7.1E-08 69.4 17.8 249 6-342 330-595 (912)
83 PTZ00421 coronin; Provisional 97.6 0.037 8E-07 59.3 25.5 112 32-220 77-201 (493)
84 PF02897 Peptidase_S9_N: Proly 97.6 0.072 1.6E-06 56.3 27.6 60 157-219 150-212 (414)
85 PF12715 Abhydrolase_7: Abhydr 97.5 0.00016 3.6E-09 72.2 6.8 114 481-603 87-228 (390)
86 PRK10115 protease 2; Provision 97.5 0.088 1.9E-06 59.1 29.0 55 156-219 152-209 (686)
87 PF02129 Peptidase_S15: X-Pro 97.5 8.1E-05 1.7E-09 73.7 3.8 99 491-601 1-102 (272)
88 PRK05077 frsA fermentation/res 97.5 0.00033 7.1E-09 73.5 8.3 101 481-603 167-267 (414)
89 KOG0315 G-protein beta subunit 97.5 0.061 1.3E-06 50.1 21.5 69 21-104 33-101 (311)
90 PRK13604 luxD acyl transferase 97.5 0.00028 6.1E-09 69.5 7.1 96 482-596 9-106 (307)
91 PTZ00420 coronin; Provisional 97.5 0.1 2.3E-06 56.5 27.1 33 175-220 168-200 (568)
92 KOG0973 Histone transcription 97.4 0.0022 4.7E-08 70.9 13.7 59 32-104 131-189 (942)
93 PF10647 Gmad1: Lipoprotein Lp 97.4 0.025 5.5E-07 55.1 19.9 73 18-104 9-83 (253)
94 COG2936 Predicted acyl esteras 97.4 0.00045 9.7E-09 72.9 7.6 106 482-604 19-128 (563)
95 TIGR00976 /NonD putative hydro 97.4 0.00037 8.1E-09 76.3 7.3 93 488-600 2-97 (550)
96 KOG2315 Predicted translation 97.3 0.056 1.2E-06 56.0 21.9 135 153-329 247-389 (566)
97 KOG2314 Translation initiation 97.3 0.23 5E-06 51.6 25.4 72 32-104 251-323 (698)
98 KOG2096 WD40 repeat protein [G 97.3 0.11 2.3E-06 50.2 21.5 152 178-371 191-350 (420)
99 KOG0272 U4/U6 small nuclear ri 97.2 0.0061 1.3E-07 60.6 13.3 58 32-103 263-320 (459)
100 KOG1274 WD40 repeat protein [G 97.2 0.019 4.1E-07 62.7 18.0 71 18-104 85-156 (933)
101 KOG0291 WD40-repeat-containing 97.2 0.012 2.7E-07 62.7 16.3 115 20-195 426-541 (893)
102 KOG1273 WD40 repeat protein [G 97.2 0.16 3.5E-06 49.0 22.1 69 21-104 14-83 (405)
103 KOG0286 G-protein beta subunit 97.2 0.084 1.8E-06 50.4 19.6 192 32-327 147-342 (343)
104 KOG0296 Angio-associated migra 97.1 0.25 5.4E-06 48.7 22.8 124 20-221 98-224 (399)
105 KOG0286 G-protein beta subunit 97.1 0.27 5.9E-06 47.0 23.5 67 21-104 48-115 (343)
106 KOG2096 WD40 repeat protein [G 97.1 0.068 1.5E-06 51.5 17.8 46 15-69 117-162 (420)
107 KOG0772 Uncharacterized conser 97.1 0.038 8.2E-07 56.6 17.0 39 29-77 213-251 (641)
108 KOG0266 WD40 repeat-containing 97.1 0.052 1.1E-06 58.0 19.6 80 7-104 227-306 (456)
109 KOG0271 Notchless-like WD40 re 97.1 0.0032 7E-08 61.7 9.2 59 32-104 369-427 (480)
110 PLN02298 hydrolase, alpha/beta 97.1 0.0027 5.9E-08 64.8 9.5 97 477-595 27-128 (330)
111 COG5354 Uncharacterized protei 97.0 0.35 7.6E-06 49.8 23.7 242 32-371 34-293 (561)
112 PF07433 DUF1513: Protein of u 97.0 0.25 5.4E-06 48.6 22.1 226 32-333 6-248 (305)
113 KOG1446 Histone H3 (Lys4) meth 97.0 0.4 8.7E-06 46.4 22.2 70 246-334 192-264 (311)
114 KOG0772 Uncharacterized conser 97.0 0.036 7.9E-07 56.7 15.9 246 32-372 169-429 (641)
115 KOG0279 G protein beta subunit 96.8 0.056 1.2E-06 51.2 15.0 157 18-254 136-296 (315)
116 COG0412 Dienelactone hydrolase 96.7 0.0053 1.2E-07 59.0 7.9 100 482-604 2-115 (236)
117 COG5354 Uncharacterized protei 96.7 0.23 5E-06 51.1 19.3 155 3-219 150-308 (561)
118 KOG2315 Predicted translation 96.7 0.061 1.3E-06 55.7 15.1 147 33-255 220-368 (566)
119 PRK10566 esterase; Provisional 96.6 0.0068 1.5E-07 59.0 8.0 98 487-603 4-109 (249)
120 PLN00181 protein SPA1-RELATED; 96.6 0.98 2.1E-05 52.1 26.5 59 32-104 534-594 (793)
121 KOG0284 Polyadenylation factor 96.5 0.033 7.1E-07 55.4 11.6 224 32-371 98-325 (464)
122 KOG0263 Transcription initiati 96.4 0.14 3E-06 55.2 16.6 80 278-371 559-638 (707)
123 PF08450 SGL: SMP-30/Gluconola 96.4 0.61 1.3E-05 45.1 20.3 102 63-217 61-164 (246)
124 PTZ00421 coronin; Provisional 96.4 1.8 4E-05 46.5 28.8 33 176-220 127-159 (493)
125 KOG2110 Uncharacterized conser 96.4 0.069 1.5E-06 52.6 12.8 82 6-105 107-192 (391)
126 TIGR03101 hydr2_PEP hydrolase, 96.4 0.01 2.2E-07 58.1 7.4 103 484-606 2-106 (266)
127 KOG1274 WD40 repeat protein [G 96.3 0.08 1.7E-06 58.0 14.1 81 9-104 122-207 (933)
128 KOG0273 Beta-transducin family 96.2 1.8 3.8E-05 44.4 23.1 61 29-104 234-294 (524)
129 COG3386 Gluconolactonase [Carb 96.1 1.7 3.6E-05 43.5 27.0 37 32-77 26-62 (307)
130 PF06500 DUF1100: Alpha/beta h 96.1 0.0057 1.2E-07 62.5 4.2 100 481-604 164-264 (411)
131 TIGR01840 esterase_phb esteras 96.1 0.01 2.2E-07 56.3 5.8 89 497-603 1-97 (212)
132 KOG0282 mRNA splicing factor [ 96.1 0.11 2.3E-06 53.0 12.7 79 6-103 238-316 (503)
133 KOG1009 Chromatin assembly com 96.0 0.66 1.4E-05 46.5 17.7 37 160-196 148-187 (434)
134 PF06433 Me-amine-dh_H: Methyl 96.0 1.9 4.2E-05 43.0 24.0 35 178-223 98-132 (342)
135 KOG0275 Conserved WD40 repeat- 95.9 0.46 1E-05 45.9 15.4 34 32-75 215-248 (508)
136 KOG1445 Tumor-specific antigen 95.8 0.1 2.2E-06 54.8 11.6 43 27-77 624-667 (1012)
137 KOG0305 Anaphase promoting com 95.8 0.21 4.6E-06 52.3 14.2 101 32-194 303-407 (484)
138 PF07433 DUF1513: Protein of u 95.8 2 4.3E-05 42.4 19.9 77 18-104 37-116 (305)
139 PLN00181 protein SPA1-RELATED; 95.8 4.9 0.00011 46.4 26.8 30 32-71 485-514 (793)
140 TIGR02821 fghA_ester_D S-formy 95.7 0.055 1.2E-06 53.6 9.4 67 481-564 12-80 (275)
141 PLN02919 haloacid dehalogenase 95.7 2.3 5E-05 50.3 23.7 35 178-224 743-777 (1057)
142 PLN02442 S-formylglutathione h 95.5 0.085 1.8E-06 52.4 9.7 68 481-564 17-85 (283)
143 PTZ00420 coronin; Provisional 95.5 5 0.00011 43.8 30.5 33 176-220 127-159 (568)
144 TIGR03100 hydr1_PEP hydrolase, 95.5 0.099 2.2E-06 51.7 10.1 92 483-595 3-95 (274)
145 KOG4378 Nuclear protein COP1 [ 95.3 0.3 6.5E-06 50.0 12.5 138 5-219 143-282 (673)
146 PRK10162 acetyl esterase; Prov 95.3 0.068 1.5E-06 54.1 8.4 89 481-595 56-145 (318)
147 KOG1524 WD40 repeat-containing 95.2 0.33 7.1E-06 50.3 12.7 57 32-103 106-163 (737)
148 PF07676 PD40: WD40-like Beta 95.2 0.055 1.2E-06 35.4 4.9 35 294-328 4-39 (39)
149 KOG0278 Serine/threonine kinas 95.2 1 2.2E-05 42.3 14.5 70 18-104 133-202 (334)
150 COG3386 Gluconolactonase [Carb 95.1 0.89 1.9E-05 45.4 15.6 50 156-217 142-193 (307)
151 KOG0282 mRNA splicing factor [ 95.1 1.2 2.7E-05 45.6 16.0 115 32-220 216-333 (503)
152 KOG2048 WD40 repeat protein [G 95.1 0.44 9.6E-06 50.7 13.4 38 175-225 476-513 (691)
153 KOG0643 Translation initiation 95.0 0.79 1.7E-05 43.5 13.5 74 18-103 83-164 (327)
154 PLN02919 haloacid dehalogenase 95.0 11 0.00023 44.9 31.6 66 178-255 686-753 (1057)
155 COG3509 LpqC Poly(3-hydroxybut 95.0 0.057 1.2E-06 52.1 6.2 105 483-604 36-147 (312)
156 KOG4391 Predicted alpha/beta h 94.9 0.18 4E-06 46.2 9.0 107 473-603 45-151 (300)
157 KOG0640 mRNA cleavage stimulat 94.8 4.2 9E-05 39.5 21.7 33 175-220 217-249 (430)
158 PF12146 Hydrolase_4: Putative 94.8 0.045 9.8E-07 42.5 4.3 51 492-564 1-51 (79)
159 COG0657 Aes Esterase/lipase [L 94.8 0.061 1.3E-06 54.3 6.6 95 488-603 57-154 (312)
160 KOG2139 WD40 repeat protein [G 94.8 0.45 9.8E-06 46.9 11.8 71 18-104 227-298 (445)
161 PLN02385 hydrolase; alpha/beta 94.6 0.15 3.3E-06 52.3 9.1 92 482-595 61-156 (349)
162 PHA02857 monoglyceride lipase; 94.6 0.14 3E-06 50.5 8.4 85 487-594 5-92 (276)
163 KOG4497 Uncharacterized conser 94.4 0.34 7.3E-06 47.1 9.9 109 22-193 309-421 (447)
164 KOG0283 WD40 repeat-containing 94.3 4.2 9E-05 44.6 18.9 74 157-256 392-466 (712)
165 KOG0265 U5 snRNP-specific prot 94.0 6.4 0.00014 38.2 23.9 58 32-104 49-108 (338)
166 KOG1273 WD40 repeat protein [G 93.8 1.8 3.9E-05 42.1 13.3 72 7-98 47-118 (405)
167 cd00312 Esterase_lipase Estera 93.8 0.21 4.4E-06 54.2 8.4 91 495-603 79-178 (493)
168 PF04762 IKI3: IKI3 family; I 93.7 17 0.00038 42.4 28.1 118 246-384 214-332 (928)
169 KOG0296 Angio-associated migra 93.5 9 0.0002 38.2 18.7 58 6-78 171-229 (399)
170 PF10503 Esterase_phd: Esteras 93.3 0.15 3.3E-06 48.2 5.5 92 496-604 2-100 (220)
171 PF01738 DLH: Dienelactone hyd 93.0 0.12 2.7E-06 49.0 4.5 87 495-603 1-100 (218)
172 PF04762 IKI3: IKI3 family; I 93.0 5.2 0.00011 46.6 18.2 52 6-69 98-149 (928)
173 KOG2919 Guanine nucleotide-bin 93.0 6 0.00013 38.8 15.4 32 32-71 51-82 (406)
174 KOG0288 WD40 repeat protein Ti 92.9 0.8 1.7E-05 46.0 9.8 108 27-193 338-450 (459)
175 PF12740 Chlorophyllase2: Chlo 92.9 0.18 3.8E-06 48.6 5.3 70 498-594 7-76 (259)
176 KOG0645 WD40 repeat protein [G 92.8 9.5 0.00021 36.5 22.6 62 32-104 16-79 (312)
177 PLN00021 chlorophyllase 92.7 0.38 8.3E-06 48.4 7.7 75 493-594 37-111 (313)
178 PRK10985 putative hydrolase; P 92.6 0.26 5.7E-06 50.0 6.6 94 481-595 30-127 (324)
179 PLN02652 hydrolase; alpha/beta 92.6 0.48 1E-05 49.5 8.5 91 482-595 110-204 (395)
180 PRK10749 lysophospholipase L2; 92.6 0.4 8.7E-06 48.8 7.8 92 481-595 29-127 (330)
181 KOG0306 WD40-repeat-containing 92.5 8.5 0.00018 42.0 17.3 72 245-333 512-583 (888)
182 PF02273 Acyl_transf_2: Acyl t 92.2 0.61 1.3E-05 43.9 7.5 90 487-597 7-100 (294)
183 COG2272 PnbA Carboxylesterase 91.9 0.43 9.2E-06 49.7 6.9 86 489-594 76-170 (491)
184 KOG2394 WD40 protein DMR-N9 [G 91.8 0.48 1E-05 49.2 7.0 55 176-255 292-346 (636)
185 PRK02888 nitrous-oxide reducta 91.8 4.3 9.3E-05 44.1 14.4 146 36-219 198-353 (635)
186 KOG0639 Transducin-like enhanc 91.5 6.6 0.00014 40.7 14.4 182 29-316 464-651 (705)
187 TIGR02171 Fb_sc_TIGR02171 Fibr 91.4 0.91 2E-05 50.9 9.1 87 277-373 330-419 (912)
188 PF10647 Gmad1: Lipoprotein Lp 91.4 1.2 2.7E-05 43.3 9.3 66 32-104 113-183 (253)
189 COG1770 PtrB Protease II [Amin 91.3 25 0.00055 38.3 27.5 53 158-218 156-209 (682)
190 COG2945 Predicted hydrolase of 91.2 0.29 6.2E-06 44.3 4.2 45 548-595 53-98 (210)
191 KOG0319 WD40-repeat-containing 91.2 27 0.00058 38.3 22.8 57 35-104 24-80 (775)
192 KOG2394 WD40 protein DMR-N9 [G 91.1 0.21 4.5E-06 51.7 3.6 58 32-103 292-349 (636)
193 KOG2106 Uncharacterized conser 91.1 1 2.3E-05 46.4 8.4 84 2-103 424-508 (626)
194 KOG1515 Arylacetamide deacetyl 90.9 0.73 1.6E-05 46.5 7.3 92 483-596 64-157 (336)
195 KOG2048 WD40 repeat protein [G 90.7 9.9 0.00022 40.9 15.4 149 2-222 400-553 (691)
196 KOG0771 Prolactin regulatory e 90.6 3.3 7.2E-05 41.8 11.3 53 32-98 188-241 (398)
197 KOG0299 U3 snoRNP-associated p 90.5 20 0.00044 36.9 16.7 52 32-97 204-255 (479)
198 PRK05371 x-prolyl-dipeptidyl a 90.3 1.3 2.9E-05 50.3 9.6 47 547-595 271-318 (767)
199 KOG1445 Tumor-specific antigen 90.3 4 8.6E-05 43.5 11.9 70 21-104 713-782 (1012)
200 PF06433 Me-amine-dh_H: Methyl 90.3 22 0.00047 35.8 19.1 39 32-78 96-134 (342)
201 KOG0265 U5 snRNP-specific prot 90.1 19 0.00042 35.0 21.7 58 6-77 70-127 (338)
202 KOG0771 Prolactin regulatory e 89.8 6.9 0.00015 39.6 12.8 58 33-104 147-204 (398)
203 PLN02872 triacylglycerol lipas 89.6 2.4 5.3E-05 44.2 10.1 106 479-596 41-158 (395)
204 KOG0306 WD40-repeat-containing 89.4 18 0.00038 39.7 16.0 65 32-104 456-526 (888)
205 KOG1524 WD40 repeat-containing 89.3 28 0.00061 36.7 16.8 38 157-194 126-165 (737)
206 COG3490 Uncharacterized protei 89.0 23 0.0005 34.4 22.3 77 160-255 94-175 (366)
207 KOG0268 Sof1-like rRNA process 88.9 4.3 9.4E-05 40.3 10.4 57 32-104 189-246 (433)
208 KOG1520 Predicted alkaloid syn 88.9 8.3 0.00018 39.0 12.6 120 34-195 118-239 (376)
209 KOG0278 Serine/threonine kinas 88.8 16 0.00034 34.7 13.4 28 165-192 174-202 (334)
210 KOG2110 Uncharacterized conser 88.2 4.1 8.9E-05 40.6 9.8 63 32-105 175-237 (391)
211 KOG0284 Polyadenylation factor 88.1 8.3 0.00018 39.0 11.9 58 32-104 182-240 (464)
212 PRK13614 lipoprotein LpqB; Pro 88.1 45 0.00098 36.5 18.9 65 18-98 328-394 (573)
213 KOG0288 WD40 repeat protein Ti 87.7 7.6 0.00016 39.3 11.4 109 171-316 338-449 (459)
214 KOG0303 Actin-binding protein 87.3 33 0.00071 34.8 15.3 52 157-221 154-207 (472)
215 KOG0310 Conserved WD40 repeat- 87.2 41 0.00088 35.0 17.9 58 32-103 112-171 (487)
216 KOG0639 Transducin-like enhanc 87.1 2.6 5.7E-05 43.5 8.0 165 156-371 439-611 (705)
217 KOG1538 Uncharacterized conser 87.1 22 0.00048 38.4 14.8 58 30-103 12-70 (1081)
218 KOG1539 WD repeat protein [Gen 87.1 3.3 7.1E-05 45.6 9.1 40 60-104 554-594 (910)
219 COG3204 Uncharacterized protei 87.0 17 0.00036 35.6 12.9 67 20-103 77-145 (316)
220 PRK13615 lipoprotein LpqB; Pro 87.0 51 0.0011 36.0 19.2 49 33-98 336-384 (557)
221 PRK13613 lipoprotein LpqB; Pro 86.7 51 0.0011 36.4 18.3 53 32-99 364-421 (599)
222 KOG0307 Vesicle coat complex C 86.6 6.7 0.00014 44.8 11.5 232 6-334 42-286 (1049)
223 COG4099 Predicted peptidase [G 86.5 0.84 1.8E-05 44.2 4.0 32 490-522 169-200 (387)
224 KOG0275 Conserved WD40 repeat- 85.6 21 0.00045 35.0 12.7 54 156-222 414-472 (508)
225 PF06977 SdiA-regulated: SdiA- 85.6 24 0.00052 34.1 13.6 68 21-103 14-81 (248)
226 KOG1539 WD repeat protein [Gen 85.4 2.1 4.7E-05 46.9 6.8 58 32-104 578-635 (910)
227 PLN02511 hydrolase 85.2 2.5 5.4E-05 44.1 7.3 97 481-595 70-169 (388)
228 KOG1408 WD40 repeat protein [F 85.1 6.7 0.00014 42.6 10.0 62 30-104 78-140 (1080)
229 KOG0283 WD40 repeat-containing 85.0 48 0.001 36.8 16.6 56 32-103 371-427 (712)
230 PRK10439 enterobactin/ferric e 85.0 4.1 9E-05 42.7 8.7 95 481-592 179-280 (411)
231 KOG1455 Lysophospholipase [Lip 84.8 2.5 5.4E-05 41.3 6.3 94 481-595 26-123 (313)
232 COG1506 DAP2 Dipeptidyl aminop 84.7 3.8 8.3E-05 45.7 8.8 64 31-104 13-77 (620)
233 PF07859 Abhydrolase_3: alpha/ 84.7 1 2.2E-05 42.3 3.8 41 548-595 21-62 (211)
234 KOG4378 Nuclear protein COP1 [ 83.9 25 0.00055 36.7 13.1 59 301-372 211-270 (673)
235 COG4188 Predicted dienelactone 83.4 4.9 0.00011 40.6 7.9 97 482-595 38-146 (365)
236 KOG0645 WD40 repeat protein [G 83.2 5.6 0.00012 38.0 7.7 62 32-105 63-124 (312)
237 KOG0316 Conserved WD40 repeat- 82.7 22 0.00047 33.5 11.1 58 33-104 62-119 (307)
238 KOG1063 RNA polymerase II elon 82.6 10 0.00022 41.0 10.2 63 32-104 527-590 (764)
239 PF07224 Chlorophyllase: Chlor 82.2 1.6 3.4E-05 41.7 3.7 74 494-594 32-105 (307)
240 KOG0647 mRNA export protein (c 82.1 32 0.0007 33.6 12.4 67 23-104 21-90 (347)
241 COG2267 PldB Lysophospholipase 81.4 4.6 9.9E-05 40.4 7.1 93 481-595 8-103 (298)
242 KOG0264 Nucleosome remodeling 81.2 27 0.00058 35.8 12.1 31 175-217 317-347 (422)
243 PF00135 COesterase: Carboxyle 81.0 2.2 4.8E-05 46.6 5.1 86 495-594 109-198 (535)
244 TIGR01607 PST-A Plasmodium sub 80.7 4.7 0.0001 41.0 7.1 96 487-594 2-117 (332)
245 KOG0295 WD40 repeat-containing 80.5 17 0.00037 36.3 10.1 36 294-333 330-365 (406)
246 KOG1520 Predicted alkaloid syn 80.2 24 0.00052 35.8 11.4 139 300-464 116-256 (376)
247 KOG0268 Sof1-like rRNA process 79.5 5.1 0.00011 39.8 6.3 78 6-103 211-289 (433)
248 PRK13614 lipoprotein LpqB; Pro 79.4 27 0.00058 38.2 12.4 66 32-104 435-503 (573)
249 KOG1408 WD40 repeat protein [F 79.0 25 0.00054 38.4 11.5 38 156-193 57-97 (1080)
250 KOG0643 Translation initiation 78.7 17 0.00036 34.9 9.1 89 1-104 116-208 (327)
251 KOG1552 Predicted alpha/beta h 78.6 8.5 0.00019 36.8 7.4 92 481-596 34-126 (258)
252 PRK02888 nitrous-oxide reducta 78.4 97 0.0021 34.1 16.0 32 185-228 140-171 (635)
253 KOG0289 mRNA splicing factor [ 76.6 61 0.0013 33.4 12.9 59 32-104 349-407 (506)
254 KOG1920 IkappaB kinase complex 76.6 1.7E+02 0.0036 34.6 18.2 57 33-104 71-127 (1265)
255 PF03088 Str_synth: Strictosid 75.6 9.2 0.0002 30.3 5.7 41 155-195 35-77 (89)
256 KOG0640 mRNA cleavage stimulat 75.2 29 0.00063 34.0 9.9 65 29-104 215-279 (430)
257 KOG4627 Kynurenine formamidase 74.2 12 0.00026 34.5 6.7 87 481-595 44-131 (270)
258 PF15492 Nbas_N: Neuroblastoma 74.1 12 0.00027 36.1 7.1 60 7-77 20-80 (282)
259 KOG0289 mRNA splicing factor [ 73.0 1.1E+02 0.0025 31.5 13.8 48 157-217 369-419 (506)
260 KOG0646 WD40 repeat protein [G 73.0 1.2E+02 0.0027 31.5 14.9 60 32-105 83-142 (476)
261 TIGR02604 Piru_Ver_Nterm putat 73.0 75 0.0016 32.8 13.5 36 156-192 163-200 (367)
262 KOG0319 WD40-repeat-containing 72.8 51 0.0011 36.2 12.0 32 176-220 64-95 (775)
263 COG3490 Uncharacterized protei 70.9 79 0.0017 30.9 11.5 73 18-104 57-131 (366)
264 KOG2111 Uncharacterized conser 70.1 42 0.00091 33.1 9.7 87 6-106 160-246 (346)
265 PRK00870 haloalkane dehalogena 68.2 17 0.00036 36.3 7.3 65 481-568 20-85 (302)
266 PF03403 PAF-AH_p_II: Platelet 67.9 3.5 7.7E-05 42.7 2.3 33 513-560 100-132 (379)
267 KOG0290 Conserved WD40 repeat- 67.9 1.3E+02 0.0028 29.5 19.5 56 7-74 75-135 (364)
268 KOG2919 Guanine nucleotide-bin 67.3 47 0.001 32.9 9.4 32 175-218 251-282 (406)
269 KOG0647 mRNA export protein (c 66.8 35 0.00075 33.4 8.4 57 157-226 52-111 (347)
270 KOG0277 Peroxisomal targeting 66.5 1.3E+02 0.0027 29.0 14.7 83 6-103 39-121 (311)
271 KOG2624 Triglyceride lipase-ch 65.8 36 0.00079 35.4 9.1 102 480-597 46-159 (403)
272 KOG3847 Phospholipase A2 (plat 65.2 5.4 0.00012 39.1 2.7 33 513-560 118-150 (399)
273 KOG0650 WD40 repeat nucleolar 65.2 43 0.00093 35.9 9.3 103 32-195 523-628 (733)
274 PRK13615 lipoprotein LpqB; Pro 64.6 94 0.002 34.0 12.3 67 31-104 417-487 (557)
275 COG3391 Uncharacterized conser 64.3 1.8E+02 0.004 30.1 18.6 61 32-104 117-177 (381)
276 PRK13613 lipoprotein LpqB; Pro 64.3 1.3E+02 0.0028 33.4 13.5 79 18-104 441-524 (599)
277 KOG1036 Mitotic spindle checkp 63.7 1.1E+02 0.0025 30.0 11.2 67 21-103 5-71 (323)
278 PF00756 Esterase: Putative es 63.1 5.6 0.00012 38.4 2.6 28 492-521 5-32 (251)
279 PF11768 DUF3312: Protein of u 63.1 1.9E+02 0.0041 31.2 13.7 92 5-103 184-276 (545)
280 KOG0302 Ribosome Assembly prot 62.6 1.2E+02 0.0025 30.9 11.3 59 32-103 259-319 (440)
281 KOG2321 WD40 repeat protein [G 62.4 2.3E+02 0.005 30.6 20.5 33 32-73 53-85 (703)
282 PF07082 DUF1350: Protein of u 62.2 20 0.00044 34.2 6.0 50 547-601 39-88 (250)
283 KOG0295 WD40 repeat-containing 62.1 90 0.002 31.4 10.4 53 158-223 315-370 (406)
284 KOG1230 Protein containing rep 61.9 1.6E+02 0.0034 30.5 12.2 67 5-78 98-170 (521)
285 KOG4178 Soluble epoxide hydrol 61.8 28 0.00061 34.7 7.1 41 514-572 45-85 (322)
286 COG1647 Esterase/lipase [Gener 61.5 4.6 0.0001 37.6 1.5 44 549-597 36-84 (243)
287 PF13360 PQQ_2: PQQ-like domai 61.0 1.5E+02 0.0032 27.9 14.9 37 33-79 25-63 (238)
288 KOG4547 WD40 repeat-containing 60.5 2.4E+02 0.0053 30.3 16.6 32 176-222 146-177 (541)
289 TIGR02276 beta_rpt_yvtn 40-res 59.2 37 0.0008 21.8 5.4 27 40-75 1-27 (42)
290 KOG1007 WD repeat protein TSSC 58.9 1.2E+02 0.0027 29.6 10.4 62 32-104 125-190 (370)
291 PF15525 DUF4652: Domain of un 58.9 63 0.0014 29.4 8.0 70 4-80 87-158 (200)
292 KOG0264 Nucleosome remodeling 58.8 2.3E+02 0.0049 29.4 19.2 32 175-218 273-304 (422)
293 PF07250 Glyoxal_oxid_N: Glyox 57.9 1.8E+02 0.0039 28.0 12.9 53 7-71 48-100 (243)
294 PF15525 DUF4652: Domain of un 57.8 1.4E+02 0.003 27.3 9.9 65 38-104 65-129 (200)
295 KOG1538 Uncharacterized conser 57.4 19 0.00041 38.9 5.3 53 176-255 14-67 (1081)
296 COG3204 Uncharacterized protei 55.3 2E+02 0.0044 28.4 11.3 38 176-225 87-124 (316)
297 TIGR01836 PHA_synth_III_C poly 54.7 62 0.0014 33.0 8.8 58 547-607 86-144 (350)
298 TIGR01250 pro_imino_pep_2 prol 54.2 30 0.00065 33.4 6.2 19 549-568 47-65 (288)
299 KOG1063 RNA polymerase II elon 54.0 34 0.00074 37.3 6.5 62 32-104 574-636 (764)
300 KOG2565 Predicted hydrolases o 53.7 27 0.00058 35.4 5.4 60 491-568 132-200 (469)
301 PF12566 DUF3748: Protein of u 53.2 11 0.00025 30.8 2.3 16 35-50 72-87 (122)
302 PF06977 SdiA-regulated: SdiA- 52.7 2.2E+02 0.0049 27.5 20.6 38 176-225 23-60 (248)
303 PF04053 Coatomer_WDAD: Coatom 52.5 2.5E+02 0.0055 29.8 12.9 38 156-194 125-164 (443)
304 TIGR01838 PHA_synth_I poly(R)- 52.2 60 0.0013 35.3 8.3 47 547-595 212-258 (532)
305 TIGR02604 Piru_Ver_Nterm putat 50.2 90 0.002 32.2 9.1 65 33-103 126-200 (367)
306 KOG0310 Conserved WD40 repeat- 50.2 3.3E+02 0.0072 28.7 14.7 59 32-103 155-213 (487)
307 KOG2106 Uncharacterized conser 49.9 3.5E+02 0.0075 28.8 24.5 66 294-369 443-508 (626)
308 KOG0269 WD40 repeat-containing 49.7 2.2E+02 0.0048 31.9 11.7 73 19-104 121-194 (839)
309 PF12894 Apc4_WD40: Anaphase-p 49.6 62 0.0013 22.1 5.2 29 32-70 13-41 (47)
310 KOG0307 Vesicle coat complex C 48.6 50 0.0011 38.1 7.1 61 32-104 163-225 (1049)
311 KOG1009 Chromatin assembly com 47.8 26 0.00055 35.6 4.2 59 32-104 125-183 (434)
312 KOG1230 Protein containing rep 47.7 82 0.0018 32.4 7.7 89 5-103 154-248 (521)
313 PF05787 DUF839: Bacterial pro 47.7 3.9E+02 0.0085 29.1 13.6 35 159-193 482-520 (524)
314 COG4757 Predicted alpha/beta h 47.0 50 0.0011 31.3 5.7 87 485-595 8-101 (281)
315 KOG1523 Actin-related protein 46.9 1.1E+02 0.0025 30.3 8.3 60 32-103 12-73 (361)
316 TIGR03056 bchO_mg_che_rel puta 46.4 38 0.00083 32.7 5.5 16 549-566 49-64 (278)
317 KOG1523 Actin-related protein 45.9 89 0.0019 31.0 7.4 18 177-194 13-30 (361)
318 PF05694 SBP56: 56kDa selenium 45.9 2.3E+02 0.005 29.8 10.7 69 300-372 313-393 (461)
319 KOG0855 Alkyl hydroperoxide re 45.6 63 0.0014 28.6 5.8 58 485-560 72-129 (211)
320 PLN02211 methyl indole-3-aceta 45.0 45 0.00097 32.7 5.7 20 548-568 38-57 (273)
321 PF15492 Nbas_N: Neuroblastoma 44.7 1.1E+02 0.0024 29.8 7.8 30 300-333 45-74 (282)
322 KOG2377 Uncharacterized conser 44.6 1.1E+02 0.0023 32.1 8.0 64 31-104 67-130 (657)
323 KOG0313 Microtubule binding pr 44.0 2.5E+02 0.0055 28.6 10.3 124 17-218 246-377 (423)
324 PF04083 Abhydro_lipase: Parti 43.6 93 0.002 22.8 5.7 41 480-521 10-51 (63)
325 KOG4640 Anaphase-promoting com 43.5 82 0.0018 34.2 7.3 52 6-74 43-96 (665)
326 KOG4283 Transcription-coupled 43.2 2.8E+02 0.006 27.3 10.1 127 32-220 145-279 (397)
327 KOG0269 WD40 repeat-containing 42.7 5.4E+02 0.012 29.0 15.5 116 176-330 135-250 (839)
328 PF05787 DUF839: Bacterial pro 42.5 49 0.0011 36.0 5.8 39 64-105 482-520 (524)
329 PF00400 WD40: WD domain, G-be 42.4 51 0.0011 20.6 3.9 19 32-50 13-31 (39)
330 TIGR01249 pro_imino_pep_1 prol 42.2 67 0.0015 32.0 6.6 15 550-565 48-62 (306)
331 COG4257 Vgb Streptogramin lyas 41.9 3.5E+02 0.0075 26.6 14.7 76 17-105 91-166 (353)
332 PLN03087 BODYGUARD 1 domain co 41.6 57 0.0012 35.0 6.1 33 484-521 177-209 (481)
333 KOG0270 WD40 repeat-containing 41.0 2.7E+02 0.006 28.9 10.2 56 35-103 248-304 (463)
334 KOG0294 WD40 repeat-containing 41.0 3.8E+02 0.0082 26.7 10.9 54 176-255 129-182 (362)
335 TIGR02427 protocat_pcaD 3-oxoa 39.9 65 0.0014 30.1 5.9 18 549-568 34-51 (251)
336 TIGR03502 lipase_Pla1_cef extr 38.6 79 0.0017 36.1 6.8 20 548-568 469-488 (792)
337 COG0429 Predicted hydrolase of 38.2 92 0.002 31.3 6.4 88 486-596 53-145 (345)
338 PF10340 DUF2424: Protein of u 38.2 29 0.00064 35.5 3.1 23 497-522 108-131 (374)
339 KOG1963 WD40 repeat protein [G 37.6 70 0.0015 35.8 6.0 58 32-104 253-310 (792)
340 KOG1332 Vesicle coat complex C 37.0 3.9E+02 0.0084 25.7 18.7 69 294-371 203-275 (299)
341 PF03088 Str_synth: Strictosid 37.0 94 0.002 24.6 5.2 49 7-70 39-87 (89)
342 PRK10673 acyl-CoA esterase; Pr 36.3 75 0.0016 30.3 5.7 37 553-592 40-78 (255)
343 PF10313 DUF2415: Uncharacteri 35.8 1.2E+02 0.0026 20.3 4.7 30 33-72 3-35 (43)
344 PF13360 PQQ_2: PQQ-like domai 35.6 3.7E+02 0.008 25.0 14.2 28 182-222 208-235 (238)
345 KOG0302 Ribosome Assembly prot 34.6 5.2E+02 0.011 26.5 11.4 119 175-330 258-378 (440)
346 PF13449 Phytase-like: Esteras 34.5 5E+02 0.011 26.2 19.1 35 299-333 215-252 (326)
347 KOG0294 WD40 repeat-containing 34.3 4.9E+02 0.011 26.0 12.3 16 178-193 172-187 (362)
348 PF12695 Abhydrolase_5: Alpha/ 34.2 34 0.00074 29.2 2.6 17 547-564 18-34 (145)
349 KOG0641 WD40 repeat protein [G 32.6 4.3E+02 0.0093 24.9 16.5 19 32-50 91-109 (350)
350 PF15390 DUF4613: Domain of un 32.3 7.1E+02 0.015 27.3 13.1 86 4-104 35-130 (671)
351 COG3391 Uncharacterized conser 32.2 5.9E+02 0.013 26.3 22.8 144 32-255 75-220 (381)
352 KOG1963 WD40 repeat protein [G 32.0 3.9E+02 0.0084 30.3 10.4 57 33-103 208-268 (792)
353 TIGR03611 RutD pyrimidine util 31.9 88 0.0019 29.5 5.4 15 552-567 36-50 (257)
354 KOG0650 WD40 repeat nucleolar 31.3 7.3E+02 0.016 27.2 15.1 54 32-100 402-455 (733)
355 KOG1838 Alpha/beta hydrolase [ 31.2 1.7E+02 0.0037 30.4 7.2 93 481-595 94-194 (409)
356 PF09910 DUF2139: Uncharacteri 31.0 1.8E+02 0.0039 28.7 6.9 73 323-414 77-150 (339)
357 PLN02894 hydrolase, alpha/beta 30.9 1.8E+02 0.004 30.3 7.9 17 548-566 125-141 (402)
358 PRK05855 short chain dehydroge 30.4 1E+02 0.0022 33.9 6.2 78 488-592 8-90 (582)
359 PF05096 Glu_cyclase_2: Glutam 30.4 5.2E+02 0.011 25.2 10.3 55 5-74 68-122 (264)
360 TIGR03343 biphenyl_bphD 2-hydr 30.3 47 0.001 32.3 3.2 19 549-568 54-72 (282)
361 smart00135 LY Low-density lipo 29.5 1.3E+02 0.0029 19.0 4.4 32 32-72 10-41 (43)
362 KOG4283 Transcription-coupled 29.3 2.3E+02 0.0051 27.8 7.3 85 7-103 170-263 (397)
363 TIGR01392 homoserO_Ac_trn homo 28.9 1.4E+02 0.0031 30.3 6.6 15 550-565 67-81 (351)
364 TIGR03695 menH_SHCHC 2-succiny 28.7 83 0.0018 29.2 4.6 17 548-566 21-37 (251)
365 KOG3101 Esterase D [General fu 28.4 87 0.0019 29.2 4.1 61 493-568 26-86 (283)
366 PF04053 Coatomer_WDAD: Coatom 27.9 1.5E+02 0.0033 31.4 6.6 37 7-50 128-164 (443)
367 PF10584 Proteasome_A_N: Prote 27.7 26 0.00056 19.9 0.4 9 36-44 6-14 (23)
368 PF01674 Lipase_2: Lipase (cla 27.7 1.3E+02 0.0029 28.4 5.5 14 547-560 21-37 (219)
369 PF11768 DUF3312: Protein of u 27.6 2.2E+02 0.0048 30.7 7.5 66 23-104 252-317 (545)
370 PF03583 LIP: Secretory lipase 26.8 83 0.0018 31.3 4.2 47 548-597 19-67 (290)
371 KOG1272 WD40-repeat-containing 26.5 2.3E+02 0.005 29.7 7.1 177 35-329 134-322 (545)
372 COG2382 Fes Enterochelin ester 26.1 58 0.0012 32.1 2.8 38 482-521 69-106 (299)
373 PF05677 DUF818: Chlamydia CHL 26.1 3.2E+02 0.007 27.7 7.9 92 481-595 111-208 (365)
374 KOG0303 Actin-binding protein 25.6 7.6E+02 0.017 25.5 12.5 60 32-105 133-192 (472)
375 KOG3914 WD repeat protein WDR4 25.4 4.4E+02 0.0096 27.0 8.8 27 166-192 142-169 (390)
376 KOG1553 Predicted alpha/beta h 25.4 1.7E+02 0.0036 29.5 5.7 60 481-560 213-273 (517)
377 KOG1920 IkappaB kinase complex 25.2 8.8E+02 0.019 29.1 12.0 61 34-104 199-259 (1265)
378 KOG1912 WD40 repeat protein [G 24.8 5.1E+02 0.011 29.3 9.6 60 22-97 7-66 (1062)
379 PF08553 VID27: VID27 cytoplas 24.2 9.1E+02 0.02 27.9 11.9 137 41-258 491-635 (794)
380 PLN02965 Probable pheophorbida 23.7 1.3E+02 0.0028 28.9 4.9 20 548-568 23-42 (255)
381 KOG1007 WD repeat protein TSSC 23.4 1.9E+02 0.0041 28.4 5.5 58 32-104 172-232 (370)
382 PF08538 DUF1749: Protein of u 22.5 2E+02 0.0044 28.6 5.9 56 549-607 57-116 (303)
383 PF03022 MRJP: Major royal jel 22.2 4.2E+02 0.0091 26.2 8.2 62 5-78 34-104 (287)
384 PF07995 GSDH: Glucose / Sorbo 22.0 6.8E+02 0.015 25.3 9.9 28 178-219 5-32 (331)
385 KOG3914 WD repeat protein WDR4 21.7 8.9E+02 0.019 24.9 12.3 36 171-220 191-226 (390)
386 PLN00193 expansin-A; Provision 21.5 2.9E+02 0.0063 26.8 6.5 31 481-511 220-250 (256)
387 PRK03204 haloalkane dehalogena 21.4 95 0.0021 30.6 3.5 38 552-595 57-97 (286)
388 PF05694 SBP56: 56kDa selenium 21.4 5.7E+02 0.012 27.0 8.8 44 59-104 219-264 (461)
389 KOG0641 WD40 repeat protein [G 21.0 7E+02 0.015 23.5 16.1 36 176-224 275-310 (350)
390 PF01731 Arylesterase: Arylest 20.9 4.2E+02 0.0091 20.8 6.3 42 18-70 43-84 (86)
391 PF09910 DUF2139: Uncharacteri 20.4 3.8E+02 0.0083 26.6 7.0 66 399-471 82-150 (339)
392 cd00707 Pancreat_lipase_like P 20.3 1.9E+02 0.0041 28.4 5.3 46 550-596 61-107 (275)
393 KOG0646 WD40 repeat protein [G 20.3 1E+03 0.022 25.1 11.1 35 174-221 81-115 (476)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.94 E-value=4.2e-24 Score=233.96 Aligned_cols=153 Identities=19% Similarity=0.195 Sum_probs=124.9
Q ss_pred cccccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcccCC-ceEEEEEECCCCceEEEEEEcCCCCCCCCCC
Q 007338 433 DINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDG 511 (607)
Q Consensus 433 ~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~-~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y 511 (607)
.|+.+++.+++.++++.+|+++|+++. ++..+++..+........+ ++|.|+|++.||.+|+|||++|+++++.|+|
T Consensus 317 ~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~y 394 (620)
T COG1506 317 GFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLTSSNNSGLKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKY 394 (620)
T ss_pred EEeeCCCEEEEEecCCCCccceEEEcC--CCceEEeecccccccccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCC
Confidence 345588999999999999999999986 5566666655555555555 9999999999999999999999999999876
Q ss_pred CCCEEEEeccCCccCcccCCccccCCCcC-CCCCCchhHHHhccCeEEEeCCCCceeccCCCC----chhhHHHHhhcHH
Q 007338 512 PLPCLFWAYPEDYKSKDAAGQVRGSPNEF-SGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWS----NWFQVQRLLLKKL 586 (607)
Q Consensus 512 ~lP~iv~~y~~~~~~~~~~~~~~g~p~~~-~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~----~~~~~~~~~~~~~ 586 (607)
|+||++||| |++. ...+.+++|.||++||+|++++..++.|||.++ ..+|+..++.|++
T Consensus 395 --P~i~~~hGG--------------P~~~~~~~~~~~~q~~~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~ 458 (620)
T COG1506 395 --PLIVYIHGG--------------PSAQVGYSFNPEIQVLASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLI 458 (620)
T ss_pred --CEEEEeCCC--------------CccccccccchhhHHHhcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHH
Confidence 999998854 3321 112246789999999999997777777887763 3477778899999
Q ss_pred HHHHHHHHhcccccccc
Q 007338 587 FDVEWLIQAELLLEDTL 603 (607)
Q Consensus 587 ~~v~~~~~~~~~~~~~~ 603 (607)
++|++|++.+++|++++
T Consensus 459 ~~~~~l~~~~~~d~~ri 475 (620)
T COG1506 459 AAVDALVKLPLVDPERI 475 (620)
T ss_pred HHHHHHHhCCCcChHHe
Confidence 99999999999999886
No 2
>PRK10115 protease 2; Provisional
Probab=99.93 E-value=1.4e-22 Score=223.07 Aligned_cols=149 Identities=15% Similarity=0.047 Sum_probs=110.1
Q ss_pred ccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCE
Q 007338 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (607)
Q Consensus 436 ~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (607)
++++.++++.++...|+++|.+++.+++.+.|+..+.+..+.....+|.+++++.||.+|+++|++|++....+ +.|+
T Consensus 370 ~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~--~~P~ 447 (686)
T PRK10115 370 PETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQTEVPGFDAANYRSEHLWITARDGVEVPVSLVYHRKHFRKG--HNPL 447 (686)
T ss_pred CCCceEEEEEecCCCCCEEEEEECCCCcEEEEEecCCCCcCccccEEEEEEEECCCCCEEEEEEEEECCCCCCC--CCCE
Confidence 56678999999999999999999988888888876533333334589999999999999999777655543333 3499
Q ss_pred EEEeccCCccCcccCCccccCCCcCCCCC-CchhHHHhccCeEEEeCCCCceeccCCCCchhhHH--------HHhhcHH
Q 007338 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMT-PTSSLIFLARRFAVLAGPSIPIIGEGLWSNWFQVQ--------RLLLKKL 586 (607)
Q Consensus 516 iv~~y~~~~~~~~~~~~~~g~p~~~~~~~-~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~--------~~~~~~~ 586 (607)
||++||+ |..-..+. ....|+|+++||+|+.++- +|.|+ +|+.|.+ +..+|++
T Consensus 448 ll~~hGg--------------~~~~~~p~f~~~~~~l~~rG~~v~~~n~---RGs~g-~G~~w~~~g~~~~k~~~~~D~~ 509 (686)
T PRK10115 448 LVYGYGS--------------YGASIDADFSFSRLSLLDRGFVYAIVHV---RGGGE-LGQQWYEDGKFLKKKNTFNDYL 509 (686)
T ss_pred EEEEECC--------------CCCCCCCCccHHHHHHHHCCcEEEEEEc---CCCCc-cCHHHHHhhhhhcCCCcHHHHH
Confidence 9999864 22111111 2346899999999999332 33322 4444433 5688999
Q ss_pred HHHHHHHHhccccccccc
Q 007338 587 FDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 587 ~~v~~~~~~~~~~~~~~~ 604 (607)
++++|||++|++|+++|.
T Consensus 510 a~~~~Lv~~g~~d~~rl~ 527 (686)
T PRK10115 510 DACDALLKLGYGSPSLCY 527 (686)
T ss_pred HHHHHHHHcCCCChHHeE
Confidence 999999999999999875
No 3
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=2.8e-19 Score=188.19 Aligned_cols=235 Identities=16% Similarity=0.142 Sum_probs=165.2
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
+.++||+-|+. +++.++++. ....+..|+|||||++|||++.. .+..+||++++.+|+.++++..+.
T Consensus 177 ~~~~l~~~d~d----g~~~~~lt~--~~~~~~~p~wSPDG~~la~~s~~-------~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 177 FPYELRVSDYD----GYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFE-------SGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred cceeEEEEcCC----CCCCEEeec--CCCceeeeEEcCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEccCCCC
Confidence 45689999986 778888884 23368899999999999998754 456899999999999999976544
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
. ...+.|||||+.++++... . ...+||++
T Consensus 244 ~-----~~~~~~SPDG~~La~~~~~-----------------------~-----------------------g~~~I~~~ 272 (429)
T PRK03629 244 H-----NGAPAFSPDGSKLAFALSK-----------------------T-----------------------GSLNLYVM 272 (429)
T ss_pred C-----cCCeEECCCCCEEEEEEcC-----------------------C-----------------------CCcEEEEE
Confidence 2 4579999998866654210 0 12479999
Q ss_pred eC-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 163 SL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 163 ~~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
++ +++.++++... ....+.|||||++|+|++.... ..+||++++++++.++|+..
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g----------~~~Iy~~d~~~g~~~~lt~~------------- 329 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG----------RPQVYKVNINGGAPQRITWE------------- 329 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCC----------CceEEEEECCCCCeEEeecC-------------
Confidence 99 66888887654 4468999999999999975421 13799999999888887541
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~ 320 (607)
......+.|||||+. +++....+ + ...+++++. ..| +.+.|+.. .....+.|||||+.|++....
T Consensus 330 ~~~~~~~~~SpDG~~-Ia~~~~~~-g--------~~~I~~~dl--~~g-~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~- 394 (429)
T PRK03629 330 GSQNQDADVSSDGKF-MVMVSSNG-G--------QQHIAKQDL--ATG-GVQVLTDT-FLDETPSIAPNGTMVIYSSSQ- 394 (429)
T ss_pred CCCccCEEECCCCCE-EEEEEccC-C--------CceEEEEEC--CCC-CeEEeCCC-CCCCCceECCCCCEEEEEEcC-
Confidence 011235899999985 44443221 1 124566553 333 55666532 234579999999998887643
Q ss_pred ccceEEEEEcCCCCCCCceEe
Q 007338 321 TSQTRTWLVCPGSKDVAPRVL 341 (607)
Q Consensus 321 ~~~~~l~~~dl~~~~~~~~~l 341 (607)
.+...|+++++++ ...+.|
T Consensus 395 ~~~~~l~~~~~~G--~~~~~l 413 (429)
T PRK03629 395 GMGSVLNLVSTDG--RFKARL 413 (429)
T ss_pred CCceEEEEEECCC--CCeEEC
Confidence 3446799999987 344555
No 4
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=2.5e-19 Score=186.43 Aligned_cols=232 Identities=11% Similarity=0.064 Sum_probs=162.7
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCE-EEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~-laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
..+||+-|.. +.+.++++. .+ ....|+|||||++ ++|.+.. .+..+||++|+++|+.++|+..+.
T Consensus 168 ~~~l~~~d~d----g~~~~~~~~--~~-~~~~p~wSpDG~~~i~y~s~~-------~~~~~Iyv~dl~tg~~~~lt~~~g 233 (419)
T PRK04043 168 KSNIVLADYT----LTYQKVIVK--GG-LNIFPKWANKEQTAFYYTSYG-------ERKPTLYKYNLYTGKKEKIASSQG 233 (419)
T ss_pred cceEEEECCC----CCceeEEcc--CC-CeEeEEECCCCCcEEEEEEcc-------CCCCEEEEEECCCCcEEEEecCCC
Confidence 4689998875 667887873 33 6778999999997 6666653 346799999999999999986443
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
. ...+.||||++.++++... + ...+||++
T Consensus 234 ~-----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~ 262 (419)
T PRK04043 234 M-----LVVSDVSKDGSKLLLTMAP---------------------------------------K-------GQPDIYLY 262 (419)
T ss_pred c-----EEeeEECCCCCEEEEEEcc---------------------------------------C-------CCcEEEEE
Confidence 2 3468899997655543210 0 13689999
Q ss_pred eC-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 163 SL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 163 ~~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
++ +|+.++||... ......|||||++|+|+++... ..+||++|+++++.++++..
T Consensus 263 dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g----------~~~Iy~~dl~~g~~~rlt~~------------- 319 (419)
T PRK04043 263 DTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLG----------YPNIFMKKLNSGSVEQVVFH------------- 319 (419)
T ss_pred ECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEeCccC-------------
Confidence 99 56889998654 3457899999999999986432 23899999999998887641
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~ 320 (607)
+...+.|||||+. ++|+......+. ......+++++. .+++.+.|+... ....|.|||||+.|++....
T Consensus 320 --g~~~~~~SPDG~~-Ia~~~~~~~~~~---~~~~~~I~v~d~---~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~- 388 (419)
T PRK04043 320 --GKNNSSVSTYKNY-IVYSSRETNNEF---GKNTFNLYLIST---NSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYL- 388 (419)
T ss_pred --CCcCceECCCCCE-EEEEEcCCCccc---CCCCcEEEEEEC---CCCCeEECCCCC-CcCCeEECCCCCEEEEEEcc-
Confidence 1123689999995 455543221110 011246777763 333677777643 34469999999988877543
Q ss_pred ccceEEEEEcCCCC
Q 007338 321 TSQTRTWLVCPGSK 334 (607)
Q Consensus 321 ~~~~~l~~~dl~~~ 334 (607)
.+...|+.+++++.
T Consensus 389 ~~~~~L~~~~l~g~ 402 (419)
T PRK04043 389 GNQSALGIIRLNYN 402 (419)
T ss_pred CCcEEEEEEecCCC
Confidence 45568999999983
No 5
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.86 E-value=2e-19 Score=188.49 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=159.0
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCE--EEEEeecCcccccCCCceeEEEEECCCCceeecccCC
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR--IAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~--laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (607)
-+.||+-+.. +++.++||. .......|+|||||+. ++|++.+ .+..+||++++++|+.++|+..+
T Consensus 164 ~~~l~~~d~d----G~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~-------~g~~~I~~~~l~~g~~~~lt~~~ 230 (428)
T PRK01029 164 QGELWSVDYD----GQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYK-------LGVPKIFLGSLENPAGKKILALQ 230 (428)
T ss_pred cceEEEEcCC----CCCceEccc--CCCCcccceEccCCCceEEEEEEcc-------CCCceEEEEECCCCCceEeecCC
Confidence 4689999986 889999985 2335789999999988 5567765 46789999999999999998765
Q ss_pred CccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEE
Q 007338 82 DICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (607)
Q Consensus 82 ~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (607)
.. ...+.|||||+.|+++.... | ..++|+
T Consensus 231 g~-----~~~p~wSPDG~~Laf~s~~~---------------------g-------------------------~~di~~ 259 (428)
T PRK01029 231 GN-----QLMPTFSPRKKLLAFISDRY---------------------G-------------------------NPDLFI 259 (428)
T ss_pred CC-----ccceEECCCCCEEEEEECCC---------------------C-------------------------CcceeE
Confidence 42 45799999987655542110 1 012222
Q ss_pred --EeC-C---CCeeecCCCC--ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC--CCeeEEeccCCCCC
Q 007338 162 --GSL-D---GTAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD--GKLVRELCDLPPAE 231 (607)
Q Consensus 162 --~~~-~---g~~~~lt~~~--~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~--~~~~~~l~~~~~~~ 231 (607)
+++ . |++++|+... ....++|||||++|+|++.... ...||++++. ++..+.|+..
T Consensus 260 ~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g----------~~~ly~~~~~~~g~~~~~lt~~---- 325 (428)
T PRK01029 260 QSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG----------RPRIYIMQIDPEGQSPRLLTKK---- 325 (428)
T ss_pred EEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECcccccceEEeccC----
Confidence 233 2 3667777532 3357899999999999975321 1368998875 3556666541
Q ss_pred CCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCc
Q 007338 232 DIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL 311 (607)
Q Consensus 232 ~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~ 311 (607)
......+.|||||+. |+|....+ + ...+++++. ..| +.+.++........+.|+|||+
T Consensus 326 ---------~~~~~~p~wSPDG~~-Laf~~~~~-g--------~~~I~v~dl--~~g-~~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 326 ---------YRNSSCPAWSPDGKK-IAFCSVIK-G--------VRQICVYDL--ATG-RDYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred ---------CCCccceeECCCCCE-EEEEEcCC-C--------CcEEEEEEC--CCC-CeEEccCCCCCccceEECCCCC
Confidence 112235899999985 55553221 1 235677663 333 6667765544567899999999
Q ss_pred EEEEEEeccccceEEEEEcCCCCCCCceEee
Q 007338 312 ALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (607)
Q Consensus 312 ~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~ 342 (607)
.|++.... .+...||++|+++ ++.+.|+
T Consensus 384 ~L~f~~~~-~g~~~L~~vdl~~--g~~~~Lt 411 (428)
T PRK01029 384 HLVYSAGN-SNESELYLISLIT--KKTRKIV 411 (428)
T ss_pred EEEEEECC-CCCceEEEEECCC--CCEEEee
Confidence 88776432 3456899999998 4556665
No 6
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.84 E-value=9e-19 Score=185.43 Aligned_cols=214 Identities=15% Similarity=0.173 Sum_probs=153.1
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
..+||+.+.. ++..++++.. ...+..|+|||||++|+|++.. .+..+||++|+++|+.++++..+..
T Consensus 181 ~~~l~~~d~d----g~~~~~lt~~--~~~v~~p~wSpDG~~lay~s~~-------~g~~~i~~~dl~~g~~~~l~~~~g~ 247 (435)
T PRK05137 181 IKRLAIMDQD----GANVRYLTDG--SSLVLTPRFSPNRQEITYMSYA-------NGRPRVYLLDLETGQRELVGNFPGM 247 (435)
T ss_pred ceEEEEECCC----CCCcEEEecC--CCCeEeeEECCCCCEEEEEEec-------CCCCEEEEEECCCCcEEEeecCCCc
Confidence 4689999875 7888899843 3368899999999999999864 4568999999999999999765442
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
...+.||||++.++++... + ...+||+++
T Consensus 248 -----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d 276 (435)
T PRK05137 248 -----TFAPRFSPDGRKVVMSLSQ---------------------------------------G-------GNTDIYTMD 276 (435)
T ss_pred -----ccCcEECCCCCEEEEEEec---------------------------------------C-------CCceEEEEE
Confidence 4688999998765553210 0 135899999
Q ss_pred C-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+ +++.++|+... ....+.|||||++|+|++.... ..+||++|+++++.++|+.
T Consensus 277 ~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g----------~~~Iy~~d~~g~~~~~lt~--------------- 331 (435)
T PRK05137 277 LRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG----------SPQLYVMNADGSNPRRISF--------------- 331 (435)
T ss_pred CCCCceEEccCCCCccCceeEcCCCCEEEEEECCCC----------CCeEEEEECCCCCeEEeec---------------
Confidence 9 56888888654 3457899999999999975321 2379999998876665532
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~ 321 (607)
.......+.|||||+.|++.... .
T Consensus 332 -------------------------------------------------------~~~~~~~~~~SpdG~~ia~~~~~-~ 355 (435)
T PRK05137 332 -------------------------------------------------------GGGRYSTPVWSPRGDLIAFTKQG-G 355 (435)
T ss_pred -------------------------------------------------------CCCcccCeEECCCCCEEEEEEcC-C
Confidence 01122347788998887765432 2
Q ss_pred cceEEEEEcCCCCCCCceEeeec-cccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 322 SQTRTWLVCPGSKDVAPRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 322 ~~~~l~~~dl~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
+..+|+++|++++ ..+.++.. ... .+.|+|||+.|+|....
T Consensus 356 ~~~~i~~~d~~~~--~~~~lt~~~~~~---------~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 356 GQFSIGVMKPDGS--GERILTSGFLVE---------GPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CceEEEEEECCCC--ceEeccCCCCCC---------CCeECCCCCEEEEEEcc
Confidence 3468999999773 44555432 112 28999999999887653
No 7
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=9e-18 Score=176.97 Aligned_cols=227 Identities=17% Similarity=0.152 Sum_probs=156.5
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||+-+.. +...++++.. ...+..|+|||||++|||.+.. .+..+||++|+++|+.++++..+..
T Consensus 176 ~~L~~~D~d----G~~~~~l~~~--~~~v~~p~wSPDG~~la~~s~~-------~~~~~I~~~dl~~g~~~~l~~~~g~- 241 (427)
T PRK02889 176 YQLQISDAD----GQNAQSALSS--PEPIISPAWSPDGTKLAYVSFE-------SKKPVVYVHDLATGRRRVVANFKGS- 241 (427)
T ss_pred cEEEEECCC----CCCceEeccC--CCCcccceEcCCCCEEEEEEcc-------CCCcEEEEEECCCCCEEEeecCCCC-
Confidence 478888864 6677788743 3358899999999999998864 3457899999999999888755432
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.||||++.++++... + ...+||.+++
T Consensus 242 ----~~~~~~SPDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~ 271 (427)
T PRK02889 242 ----NSAPAWSPDGRTLAVALSR---------------------------------------D-------GNSQIYTVNA 271 (427)
T ss_pred ----ccceEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEEC
Confidence 4579999998765553110 0 1358999998
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
.++.++|+... ....+.|||||++|+|++.... ...||.+++.+++.++++... .
T Consensus 272 ~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g----------~~~Iy~~~~~~g~~~~lt~~g-------------~ 328 (427)
T PRK02889 272 DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG----------APQIYRMPASGGAAQRVTFTG-------------S 328 (427)
T ss_pred CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCC----------CcEEEEEECCCCceEEEecCC-------------C
Confidence 45788887643 3457899999999999875321 237999999888877775310 1
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
....++|||||+. ++|.... ++ ...+++++. ..| +.+.++.. .....+.|+|||+.|++.... .+
T Consensus 329 ~~~~~~~SpDG~~-Ia~~s~~-~g--------~~~I~v~d~--~~g-~~~~lt~~-~~~~~p~~spdg~~l~~~~~~-~g 393 (427)
T PRK02889 329 YNTSPRISPDGKL-LAYISRV-GG--------AFKLYVQDL--ATG-QVTALTDT-TRDESPSFAPNGRYILYATQQ-GG 393 (427)
T ss_pred CcCceEECCCCCE-EEEEEcc-CC--------cEEEEEEEC--CCC-CeEEccCC-CCccCceECCCCCEEEEEEec-CC
Confidence 1235899999995 4454321 11 124666663 233 55555543 234679999999988876543 34
Q ss_pred ceEEEEEcCCC
Q 007338 323 QTRTWLVCPGS 333 (607)
Q Consensus 323 ~~~l~~~dl~~ 333 (607)
...|+.+++++
T Consensus 394 ~~~l~~~~~~g 404 (427)
T PRK02889 394 RSVLAAVSSDG 404 (427)
T ss_pred CEEEEEEECCC
Confidence 56899999976
No 8
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.82 E-value=9.7e-18 Score=177.24 Aligned_cols=215 Identities=15% Similarity=0.095 Sum_probs=151.3
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
...||+.+.. +.+.++|+.. ...+..|+|||||++|+|++.. .+..+||++|+.+|+.++++..+..
T Consensus 197 ~~~l~i~d~d----G~~~~~l~~~--~~~~~~p~wSPDG~~La~~s~~-------~g~~~L~~~dl~tg~~~~lt~~~g~ 263 (448)
T PRK04792 197 PYQLMIADYD----GYNEQMLLRS--PEPLMSPAWSPDGRKLAYVSFE-------NRKAEIFVQDIYTQVREKVTSFPGI 263 (448)
T ss_pred ceEEEEEeCC----CCCceEeecC--CCcccCceECCCCCEEEEEEec-------CCCcEEEEEECCCCCeEEecCCCCC
Confidence 3578888865 6677888743 3358899999999999999864 4568999999999999888755431
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
...+.||||++.++++... + ...+||+++
T Consensus 264 -----~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d 292 (448)
T PRK04792 264 -----NGAPRFSPDGKKLALVLSK---------------------------------------D-------GQPEIYVVD 292 (448)
T ss_pred -----cCCeeECCCCCEEEEEEeC---------------------------------------C-------CCeEEEEEE
Confidence 3578999998866553210 0 135899999
Q ss_pred C-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc
Q 007338 164 L-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 164 ~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+ +++.++|+... ....++|||||++|+|++.... ..+||++|+++++.+.|+.
T Consensus 293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g----------~~~Iy~~dl~~g~~~~Lt~--------------- 347 (448)
T PRK04792 293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGG----------KPQIYRVNLASGKVSRLTF--------------- 347 (448)
T ss_pred CCCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEEec---------------
Confidence 9 66888887653 3457899999999999975321 2379999998886665531
Q ss_pred CCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccc
Q 007338 242 EGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKT 321 (607)
Q Consensus 242 ~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~ 321 (607)
.......+.|||||+.|++.... .
T Consensus 348 -------------------------------------------------------~g~~~~~~~~SpDG~~l~~~~~~-~ 371 (448)
T PRK04792 348 -------------------------------------------------------EGEQNLGGSITPDGRSMIMVNRT-N 371 (448)
T ss_pred -------------------------------------------------------CCCCCcCeeECCCCCEEEEEEec-C
Confidence 00011236789998877765432 3
Q ss_pred cceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 322 SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 322 ~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
+..+||++|+++ +..+.|+...... .+.|+|||+.|+|....
T Consensus 372 g~~~I~~~dl~~--g~~~~lt~~~~d~--------~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 372 GKFNIARQDLET--GAMQVLTSTRLDE--------SPSVAPNGTMVIYSTTY 413 (448)
T ss_pred CceEEEEEECCC--CCeEEccCCCCCC--------CceECCCCCEEEEEEec
Confidence 456899999988 4556665322111 17899999999887754
No 9
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.3e-17 Score=174.81 Aligned_cols=263 Identities=17% Similarity=0.193 Sum_probs=167.3
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCe-E-EEEEecCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST-L-LIFTIPSSRRD 111 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~-~-l~~~~~~~~~~ 111 (607)
..+.++ +++|||+....... ......+||++|.+|+++++||..... ...+.|||||+ + +++.+..
T Consensus 140 g~~g~~--~~~iayv~~~~~~~-~~~~~~~l~~~d~dG~~~~~lt~~~~~-----~~sP~wSPDG~~~~~~y~S~~---- 207 (428)
T PRK01029 140 GVPGIS--SGKIIFSLSTTNSD-TELKQGELWSVDYDGQNLRPLTQEHSL-----SITPTWMHIGSGFPYLYVSYK---- 207 (428)
T ss_pred CCCccc--cCEEEEEEeeCCcc-cccccceEEEEcCCCCCceEcccCCCC-----cccceEccCCCceEEEEEEcc----
Confidence 446666 89999998752110 002357999999999999999965442 46899999975 3 2232110
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC-ceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~-~~~~~~~SpDg~~i 189 (607)
. ...+||++++ +|+.++|+... ....++|||||++|
T Consensus 208 ----------------------------~--------------g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~L 245 (428)
T PRK01029 208 ----------------------------L--------------GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLL 245 (428)
T ss_pred ----------------------------C--------------CCceEEEEECCCCCceEeecCCCCccceEECCCCCEE
Confidence 0 1368999999 56888887533 33478999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEE--EeCCC---CeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQV--WTTDG---KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~--~d~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
+|++.... ..++|+ +++.+ ++.++|+... ......++|||||+. |+|....+
T Consensus 246 af~s~~~g----------~~di~~~~~~~~~g~~g~~~~lt~~~------------~~~~~~p~wSPDG~~-Laf~s~~~ 302 (428)
T PRK01029 246 AFISDRYG----------NPDLFIQSFSLETGAIGKPRRLLNEA------------FGTQGNPSFSPDGTR-LVFVSNKD 302 (428)
T ss_pred EEEECCCC----------CcceeEEEeecccCCCCcceEeecCC------------CCCcCCeEECCCCCE-EEEEECCC
Confidence 99975322 124555 45553 4556665310 011235899999995 55554321
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeec
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~ 344 (607)
+ ...+++++. ...+.+.+.++........+.|||||+.|++.... .+..+||++|+++ ++.+.|+..
T Consensus 303 -g--------~~~ly~~~~-~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~--g~~~~Lt~~ 369 (428)
T PRK01029 303 -G--------RPRIYIMQI-DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLAT--GRDYQLTTS 369 (428)
T ss_pred -C--------CceEEEEEC-cccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCC--CCeEEccCC
Confidence 1 124666543 11222455565554456789999999988876532 2446899999998 456666532
Q ss_pred c--ccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeec
Q 007338 345 V--FENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWES 413 (607)
Q Consensus 345 ~--~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~ 413 (607)
. ... +.|+|||+.|+|.....+ ... |+.+++++++.++|+..
T Consensus 370 ~~~~~~---------p~wSpDG~~L~f~~~~~g--~~~----------------L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 370 PENKES---------PSWAIDSLHLVYSAGNSN--ESE----------------LYLISLITKKTRKIVIG 413 (428)
T ss_pred CCCccc---------eEECCCCCEEEEEECCCC--Cce----------------EEEEECCCCCEEEeecC
Confidence 1 222 899999999988765321 222 34578878887777643
No 10
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.3e-17 Score=176.47 Aligned_cols=234 Identities=16% Similarity=0.121 Sum_probs=161.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||+.|+. +++.++|+.. ...+..|+|||||++|||.+.. .+..+||++|+++|+.++++.....
T Consensus 184 ~~l~i~D~~----g~~~~~lt~~--~~~v~~p~wSpDg~~la~~s~~-------~~~~~l~~~dl~~g~~~~l~~~~g~- 249 (433)
T PRK04922 184 YALQVADSD----GYNPQTILRS--AEPILSPAWSPDGKKLAYVSFE-------RGRSAIYVQDLATGQRELVASFRGI- 249 (433)
T ss_pred EEEEEECCC----CCCceEeecC--CCccccccCCCCCCEEEEEecC-------CCCcEEEEEECCCCCEEEeccCCCC-
Confidence 468888875 7778888843 3358899999999999998754 4567999999999999888755431
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+||++.++++... + ...+||++++
T Consensus 250 ----~~~~~~SpDG~~l~~~~s~---------------------------------------~-------g~~~Iy~~d~ 279 (433)
T PRK04922 250 ----NGAPSFSPDGRRLALTLSR---------------------------------------D-------GNPEIYVMDL 279 (433)
T ss_pred ----ccCceECCCCCEEEEEEeC---------------------------------------C-------CCceEEEEEC
Confidence 4578999998765553110 0 1257999999
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+|+.++++... ....++|||||++|+|++.... ...||++++.+++.++|+... .
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g----------~~~iy~~dl~~g~~~~lt~~g-------------~ 336 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG----------RPQIYRVAASGGSAERLTFQG-------------N 336 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEeecCC-------------C
Confidence 66888887643 3357899999999999975321 137999999988888775310 1
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
....++|||||+. +++... +++ ...+++++. .+| +.+.++... ....+.|+|||+.+++.... .+
T Consensus 337 ~~~~~~~SpDG~~-Ia~~~~-~~~--------~~~I~v~d~--~~g-~~~~Lt~~~-~~~~p~~spdG~~i~~~s~~-~g 401 (433)
T PRK04922 337 YNARASVSPDGKK-IAMVHG-SGG--------QYRIAVMDL--STG-SVRTLTPGS-LDESPSFAPNGSMVLYATRE-GG 401 (433)
T ss_pred CccCEEECCCCCE-EEEEEC-CCC--------ceeEEEEEC--CCC-CeEECCCCC-CCCCceECCCCCEEEEEEec-CC
Confidence 1235899999995 444432 111 124666663 233 555665433 34568999999988776543 34
Q ss_pred ceEEEEEcCCCCCCCceEee
Q 007338 323 QTRTWLVCPGSKDVAPRVLF 342 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~ 342 (607)
...||++++++ ...+.+.
T Consensus 402 ~~~L~~~~~~g--~~~~~l~ 419 (433)
T PRK04922 402 RGVLAAVSTDG--RVRQRLV 419 (433)
T ss_pred ceEEEEEECCC--CceEEcc
Confidence 56899999987 3445553
No 11
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.5e-17 Score=176.30 Aligned_cols=226 Identities=18% Similarity=0.178 Sum_probs=156.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.||+-++. +++.++++. ....+..|+|||||++|||++.. .+..+||++++++|+.++++.....
T Consensus 180 ~l~~~d~~----g~~~~~l~~--~~~~~~~p~wSpDG~~la~~s~~-------~~~~~l~~~~l~~g~~~~l~~~~g~-- 244 (430)
T PRK00178 180 TLQRSDYD----GARAVTLLQ--SREPILSPRWSPDGKRIAYVSFE-------QKRPRIFVQNLDTGRREQITNFEGL-- 244 (430)
T ss_pred EEEEECCC----CCCceEEec--CCCceeeeeECCCCCEEEEEEcC-------CCCCEEEEEECCCCCEEEccCCCCC--
Confidence 47777765 677788874 23357899999999999999864 3567999999999999999755431
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (607)
...+.||||++.++++... + ...+||++++
T Consensus 245 ---~~~~~~SpDG~~la~~~~~---------------------------------------~-------g~~~Iy~~d~~ 275 (430)
T PRK00178 245 ---NGAPAWSPDGSKLAFVLSK---------------------------------------D-------GNPEIYVMDLA 275 (430)
T ss_pred ---cCCeEECCCCCEEEEEEcc---------------------------------------C-------CCceEEEEECC
Confidence 4579999998766553210 0 1258999999
Q ss_pred CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCC
Q 007338 165 DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (607)
Q Consensus 165 ~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (607)
+++.++|+... ....+.|||||++|+|.+.... ...||++++.+++.++++... ..
T Consensus 276 ~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g----------~~~iy~~d~~~g~~~~lt~~~-------------~~ 332 (430)
T PRK00178 276 SRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGG----------KPQIYKVNVNGGRAERVTFVG-------------NY 332 (430)
T ss_pred CCCeEEcccCCCCcCCeEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeecCC-------------CC
Confidence 56788887643 3457899999999999975422 237999999998888775310 11
Q ss_pred CCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccc
Q 007338 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQ 323 (607)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~ 323 (607)
...+.|||||+. +++....+ + ...+++++. .+| +.+.++... ....+.|||||+.+++.... .+.
T Consensus 333 ~~~~~~Spdg~~-i~~~~~~~-~--------~~~l~~~dl--~tg-~~~~lt~~~-~~~~p~~spdg~~i~~~~~~-~g~ 397 (430)
T PRK00178 333 NARPRLSADGKT-LVMVHRQD-G--------NFHVAAQDL--QRG-SVRILTDTS-LDESPSVAPNGTMLIYATRQ-QGR 397 (430)
T ss_pred ccceEECCCCCE-EEEEEccC-C--------ceEEEEEEC--CCC-CEEEccCCC-CCCCceECCCCCEEEEEEec-CCc
Confidence 124799999995 55543221 1 124666663 333 556665432 33468999999988877543 345
Q ss_pred eEEEEEcCCC
Q 007338 324 TRTWLVCPGS 333 (607)
Q Consensus 324 ~~l~~~dl~~ 333 (607)
.+||++++++
T Consensus 398 ~~l~~~~~~g 407 (430)
T PRK00178 398 GVLMLVSING 407 (430)
T ss_pred eEEEEEECCC
Confidence 6899999987
No 12
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=1.6e-16 Score=168.24 Aligned_cols=253 Identities=13% Similarity=0.107 Sum_probs=166.6
Q ss_pred CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCC
Q 007338 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (607)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~ 121 (607)
..+|||++..... .....+||++|.+++..+++|..... +..+.||||++.|++....
T Consensus 165 ~~~iafv~~~~~~---~~~~~~l~~~d~dg~~~~~lt~~~~~-----v~~p~wSpDG~~lay~s~~-------------- 222 (435)
T PRK05137 165 DTRIVYVAESGPK---NKRIKRLAIMDQDGANVRYLTDGSSL-----VLTPRFSPNRQEITYMSYA-------------- 222 (435)
T ss_pred CCeEEEEEeeCCC---CCcceEEEEECCCCCCcEEEecCCCC-----eEeeEECCCCCEEEEEEec--------------
Confidence 5689999865210 01267999999999999999865442 6789999998766554210
Q ss_pred CeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCc
Q 007338 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (607)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~ 199 (607)
. ...+||++++ +|+.++|+.. .....++|||||++|+|+.....
T Consensus 223 ---------~-----------------------g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g-- 268 (435)
T PRK05137 223 ---------N-----------------------GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGG-- 268 (435)
T ss_pred ---------C-----------------------CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCC--
Confidence 0 1358899999 6777788743 34457899999999999864321
Q ss_pred cccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEE
Q 007338 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (607)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~ 279 (607)
..+||++|+++++.++|+..
T Consensus 269 --------~~~Iy~~d~~~~~~~~Lt~~---------------------------------------------------- 288 (435)
T PRK05137 269 --------NTDIYTMDLRSGTTTRLTDS---------------------------------------------------- 288 (435)
T ss_pred --------CceEEEEECCCCceEEccCC----------------------------------------------------
Confidence 24799999998877666430
Q ss_pred eccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCee
Q 007338 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (607)
Q Consensus 280 ~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (607)
......+.|||||+.|++.... .+..+||++|+++ +..+.++... ..+. .+.
T Consensus 289 ------------------~~~~~~~~~spDG~~i~f~s~~-~g~~~Iy~~d~~g--~~~~~lt~~~--~~~~-----~~~ 340 (435)
T PRK05137 289 ------------------PAIDTSPSYSPDGSQIVFESDR-SGSPQLYVMNADG--SNPRRISFGG--GRYS-----TPV 340 (435)
T ss_pred ------------------CCccCceeEcCCCCEEEEEECC-CCCCeEEEEECCC--CCeEEeecCC--Cccc-----CeE
Confidence 0112247888888877766532 2345899999988 4556665321 0011 278
Q ss_pred eCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCC
Q 007338 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQL 439 (607)
Q Consensus 360 ~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 439 (607)
|+|||+.|++.....+ ... +..++++++..+.++... .. ..++|+|||+
T Consensus 341 ~SpdG~~ia~~~~~~~--~~~----------------i~~~d~~~~~~~~lt~~~------~~-------~~p~~spDG~ 389 (435)
T PRK05137 341 WSPRGDLIAFTKQGGG--QFS----------------IGVMKPDGSGERILTSGF------LV-------EGPTWAPNGR 389 (435)
T ss_pred ECCCCCEEEEEEcCCC--ceE----------------EEEEECCCCceEeccCCC------CC-------CCCeECCCCC
Confidence 9999999988764321 112 334666555544342211 00 1257899999
Q ss_pred EEEEEeeccccc--ceEEEEecCCCceeeEec
Q 007338 440 KILTSKESKTEI--TQYHILSWPLKKSSQITN 469 (607)
Q Consensus 440 ~~v~~~ss~~~p--~~l~~~~~~~~~~~~Lt~ 469 (607)
.++|........ ..||++++.+++.++|+.
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 999888765553 579999998877777764
No 13
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=4e-16 Score=164.37 Aligned_cols=229 Identities=18% Similarity=0.198 Sum_probs=155.1
Q ss_pred CEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCC
Q 007338 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (607)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (607)
++|||+...... ....+||++|.+++..+++|..... ...+.|||||+.+++....
T Consensus 164 ~riayv~~~~~~----~~~~~l~~~d~dg~~~~~lt~~~~~-----~~~p~wSPDG~~la~~s~~--------------- 219 (429)
T PRK03629 164 TRIAYVVQTNGG----QFPYELRVSDYDGYNQFVVHRSPQP-----LMSPAWSPDGSKLAYVTFE--------------- 219 (429)
T ss_pred CeEEEEEeeCCC----CcceeEEEEcCCCCCCEEeecCCCc-----eeeeEEcCCCCEEEEEEec---------------
Confidence 789998864211 3467999999999988999865432 5689999998766654210
Q ss_pred eeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCcc
Q 007338 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (607)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~ 200 (607)
. ...+||++++ +|+.++|+.. .....+.|||||++|+|+.....
T Consensus 220 --------~-----------------------g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g--- 265 (429)
T PRK03629 220 --------S-----------------------GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTG--- 265 (429)
T ss_pred --------C-----------------------CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCC---
Confidence 0 1247888888 6788887643 33457899999999999864321
Q ss_pred ccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEe
Q 007338 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (607)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~ 280 (607)
..+||++|+++++.++++... .....+.|||||+. |+|....+ + ...+|.
T Consensus 266 -------~~~I~~~d~~tg~~~~lt~~~-------------~~~~~~~wSPDG~~-I~f~s~~~-g--------~~~Iy~ 315 (429)
T PRK03629 266 -------SLNLYVMDLASGQIRQVTDGR-------------SNNTEPTWFPDSQN-LAYTSDQA-G--------RPQVYK 315 (429)
T ss_pred -------CcEEEEEECCCCCEEEccCCC-------------CCcCceEECCCCCE-EEEEeCCC-C--------CceEEE
Confidence 236999999999888886521 12245899999985 55543211 1 135676
Q ss_pred ccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeee
Q 007338 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (607)
Q Consensus 281 ~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (607)
++. .+++.+.++........+.|||||+.|++.... .+..+||++|+++ ++.+.|+... .+ ..+.|
T Consensus 316 ~d~---~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~--g~~~~Lt~~~-~~-------~~p~~ 381 (429)
T PRK03629 316 VNI---NGGAPQRITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLAT--GGVQVLTDTF-LD-------ETPSI 381 (429)
T ss_pred EEC---CCCCeEEeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCC--CCeEEeCCCC-CC-------CCceE
Confidence 663 332556665444445679999999988776432 2346899999988 4566665321 11 12889
Q ss_pred CCCCCEEEEEeee
Q 007338 361 TSTGTNVIAKIKK 373 (607)
Q Consensus 361 ~~dg~~~~~~~~~ 373 (607)
+|||+.|++....
T Consensus 382 SpDG~~i~~~s~~ 394 (429)
T PRK03629 382 APNGTMVIYSSSQ 394 (429)
T ss_pred CCCCCEEEEEEcC
Confidence 9999999988754
No 14
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=1.1e-16 Score=166.77 Aligned_cols=206 Identities=12% Similarity=0.163 Sum_probs=140.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
++||+.++. +|+.++|+.... ....|.|||||++|+|+... .+..+||++|+++++.++||.....
T Consensus 213 ~~Iyv~dl~----tg~~~~lt~~~g--~~~~~~~SPDG~~la~~~~~-------~g~~~Iy~~dl~~g~~~~LT~~~~~- 278 (419)
T PRK04043 213 PTLYKYNLY----TGKKEKIASSQG--MLVVSDVSKDGSKLLLTMAP-------KGQPDIYLYDTNTKTLTQITNYPGI- 278 (419)
T ss_pred CEEEEEECC----CCcEEEEecCCC--cEEeeEECCCCCEEEEEEcc-------CCCcEEEEEECCCCcEEEcccCCCc-
Confidence 589999997 899999985332 46679999999999999865 4578999999999999999865431
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+|||+.++++++. + ...+||++++
T Consensus 279 ----d~~p~~SPDG~~I~F~Sdr----------------------~------------------------g~~~Iy~~dl 308 (419)
T PRK04043 279 ----DVNGNFVEDDKRIVFVSDR----------------------L------------------------GYPNIFMKKL 308 (419)
T ss_pred ----cCccEECCCCCEEEEEECC----------------------C------------------------CCceEEEEEC
Confidence 3467899998755554210 0 1358999999
Q ss_pred -CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCC
Q 007338 165 -DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (607)
Q Consensus 165 -~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (607)
+|+.++++..+.. ...|||||++|+|+.......+. ....+|+++|++++..+.|+... .
T Consensus 309 ~~g~~~rlt~~g~~-~~~~SPDG~~Ia~~~~~~~~~~~----~~~~~I~v~d~~~g~~~~LT~~~--------------~ 369 (419)
T PRK04043 309 NSGSVEQVVFHGKN-NSSVSTYKNYIVYSSRETNNEFG----KNTFNLYLISTNSDYIRRLTANG--------------V 369 (419)
T ss_pred CCCCeEeCccCCCc-CceECCCCCEEEEEEcCCCcccC----CCCcEEEEEECCCCCeEECCCCC--------------C
Confidence 5688888764432 36999999999999754311100 01248999999999999987621 1
Q ss_pred CCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeE
Q 007338 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSW 306 (607)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~w 306 (607)
...++|||||+. ++|.... ++ ...++.++ .+|.....+....+....|+|
T Consensus 370 ~~~p~~SPDG~~-I~f~~~~-~~--------~~~L~~~~---l~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 370 NQFPRFSSDGGS-IMFIKYL-GN--------QSALGIIR---LNYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred cCCeEECCCCCE-EEEEEcc-CC--------cEEEEEEe---cCCCeeEEeecCCCccCCCCC
Confidence 124899999994 5555322 11 12344444 344333444433444555555
No 15
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.75 E-value=5.3e-16 Score=163.80 Aligned_cols=226 Identities=19% Similarity=0.175 Sum_probs=150.9
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..|||-+.. ++..++|+.. ...+..|+|||||++|||++.. ++..+||++|+.+|+.++++.....
T Consensus 184 ~~i~i~d~d----g~~~~~lt~~--~~~v~~p~wSPDG~~la~~s~~-------~~~~~i~i~dl~tg~~~~l~~~~g~- 249 (429)
T PRK01742 184 YEVRVADYD----GFNQFIVNRS--SQPLMSPAWSPDGSKLAYVSFE-------NKKSQLVVHDLRSGARKVVASFRGH- 249 (429)
T ss_pred EEEEEECCC----CCCceEeccC--CCccccceEcCCCCEEEEEEec-------CCCcEEEEEeCCCCceEEEecCCCc-
Confidence 578888875 6667777742 3358999999999999998763 3467899999999988888654431
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+||++.|+++... + ...+||.+++
T Consensus 250 ----~~~~~wSPDG~~La~~~~~---------------------------------------~-------g~~~Iy~~d~ 279 (429)
T PRK01742 250 ----NGAPAFSPDGSRLAFASSK---------------------------------------D-------GVLNIYVMGA 279 (429)
T ss_pred ----cCceeECCCCCEEEEEEec---------------------------------------C-------CcEEEEEEEC
Confidence 3578999998866654210 0 1246888998
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+++.++|+... ....+.|||||++|+|++.... ..+||.++..++..+.+.. .
T Consensus 280 ~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g----------~~~I~~~~~~~~~~~~l~~---------------~ 334 (429)
T PRK01742 280 NGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSG----------SPQVYRMSASGGGASLVGG---------------R 334 (429)
T ss_pred CCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCeEEecC---------------C
Confidence 56788887643 4468999999999999875321 2378999988876665532 1
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
+ ..+.|||||+. +++... +.++.++. .+| +.+.++.. .....+.|+|||+.|++... +..
T Consensus 335 ~-~~~~~SpDG~~-ia~~~~-------------~~i~~~Dl--~~g-~~~~lt~~-~~~~~~~~sPdG~~i~~~s~-~g~ 394 (429)
T PRK01742 335 G-YSAQISADGKT-LVMING-------------DNVVKQDL--TSG-STEVLSST-FLDESPSISPNGIMIIYSST-QGL 394 (429)
T ss_pred C-CCccCCCCCCE-EEEEcC-------------CCEEEEEC--CCC-CeEEecCC-CCCCCceECCCCCEEEEEEc-CCC
Confidence 1 24789999994 444321 23444443 233 34444322 23457899999998887754 233
Q ss_pred ceEEEEEcCCCCCCCceEe
Q 007338 323 QTRTWLVCPGSKDVAPRVL 341 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l 341 (607)
...++++++++ ...+.|
T Consensus 395 ~~~l~~~~~~G--~~~~~l 411 (429)
T PRK01742 395 GKVLQLVSADG--RFKARL 411 (429)
T ss_pred ceEEEEEECCC--CceEEc
Confidence 34566777776 334555
No 16
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.75 E-value=3.5e-16 Score=160.72 Aligned_cols=308 Identities=16% Similarity=0.170 Sum_probs=184.1
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
+..++||.++. +++.++|+.. ......+.|||||++|||+.. ++||+.++.+++.++||....
T Consensus 21 ~~~~y~i~d~~----~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-----------~nly~~~~~~~~~~~lT~dg~ 83 (353)
T PF00930_consen 21 FKGDYYIYDIE----TGEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-----------NNLYLRDLATGQETQLTTDGE 83 (353)
T ss_dssp EEEEEEEEETT----TTEEEESS-E--ETTBSEEEE-SSSTEEEEEET-----------TEEEEESSTTSEEEESES--T
T ss_pred cceeEEEEecC----CCceEECcCC--ccccccceeecCCCeeEEEec-----------CceEEEECCCCCeEEeccccc
Confidence 56789999997 8888888732 346999999999999999973 699999999999999997652
Q ss_pred ccc-cc------------cccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccc--cccCccc
Q 007338 83 ICL-NA------------VFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN--LLKDEYD 147 (607)
Q Consensus 83 ~~~-~~------------~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~ 147 (607)
..+ +. ....+.||||++.|++..-+++.... -.......... .|.. .++++..
T Consensus 84 ~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~-------~~~~~~~~~~~-----~yp~~~~~~YPk~ 151 (353)
T PF00930_consen 84 PGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPE-------YPLPDYSPPDS-----QYPEVESIRYPKA 151 (353)
T ss_dssp TTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-E-------EEEEEESSSTE-----SS-EEEEEE--BT
T ss_pred eeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCce-------EEeeccCCccc-----cCCcccccccCCC
Confidence 211 11 12367899997765555333332210 00000000000 0100 0122221
Q ss_pred ccceeeeccceEEEEeC-CCCeeecCCC-------CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 148 ESLFDYYTTAQLVLGSL-DGTAKDFGTP-------AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 148 ~~~~~~~~~~~l~~~~~-~g~~~~lt~~-------~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
+ ... ....|+++++ +++...+..+ .++..+.|++|+++|++....+... ...+.++|+.++
T Consensus 152 G--~~n-p~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~--------~~~l~~~d~~tg 220 (353)
T PF00930_consen 152 G--DPN-PRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQN--------RLDLVLCDASTG 220 (353)
T ss_dssp T--S----EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTST--------EEEEEEEEECTT
T ss_pred C--CcC-CceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCC--------EEEEEEEECCCC
Confidence 1 111 3568999999 5655444322 2456899999999888887665432 236788888877
Q ss_pred eeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCc
Q 007338 220 LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL 299 (607)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~ 299 (607)
..+.+... . ...|- .
T Consensus 221 ~~~~~~~e----~-------------~~~Wv------------------------------------------------~ 235 (353)
T PF00930_consen 221 ETRVVLEE----T-------------SDGWV------------------------------------------------D 235 (353)
T ss_dssp TCEEEEEE----E-------------SSSSS------------------------------------------------S
T ss_pred ceeEEEEe----c-------------CCcce------------------------------------------------e
Confidence 66554320 0 00000 0
Q ss_pred ccceeeEc-CCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcC
Q 007338 300 RFRSVSWC-DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQ 378 (607)
Q Consensus 300 ~~~~~~ws-~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~ 378 (607)
....+.|. +++..++.... +.+..|||+++.++ +.++.|+.+.+.- .. .+.|+++++.|+|.+..+....
T Consensus 236 ~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~--~~~~~lT~G~~~V-~~-----i~~~d~~~~~iyf~a~~~~p~~ 306 (353)
T PF00930_consen 236 VYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDG--GKPRQLTSGDWEV-TS-----ILGWDEDNNRIYFTANGDNPGE 306 (353)
T ss_dssp SSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTS--SEEEESS-SSS-E-EE-----EEEEECTSSEEEEEESSGGTTS
T ss_pred eecccccccCCCCEEEEEEE-cCCCcEEEEEcccc--cceeccccCceee-cc-----cceEcCCCCEEEEEecCCCCCc
Confidence 11234443 77776665544 55788999999998 4567787554331 00 2778899999999886533223
Q ss_pred cEEEEeecCCCCCCCcceeEeeecC-CCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccc
Q 007338 379 IYILLNGRGFTPEGNIPFLDLFDIN-TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (607)
Q Consensus 379 ~~l~~~~~g~~~~~~~~~l~~~d~~-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~ 452 (607)
.+ |++++++ +++.++|+..... . . ..+|||++++++.++++++.|+
T Consensus 307 r~----------------lY~v~~~~~~~~~~LT~~~~~----~-~-------~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 307 RH----------------LYRVSLDSGGEPKCLTCEDGD----H-Y-------SASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp BE----------------EEEEETTETTEEEESSTTSST----T-E-------EEEE-TTSSEEEEEEESSSSCE
T ss_pred eE----------------EEEEEeCCCCCeEeccCCCCC----c-e-------EEEECCCCCEEEEEEcCCCCCC
Confidence 34 4477887 7888888765432 1 1 2468999999999999999986
No 17
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=2e-15 Score=159.22 Aligned_cols=226 Identities=17% Similarity=0.200 Sum_probs=151.3
Q ss_pred CEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCC
Q 007338 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (607)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (607)
.+|||++.. .+..+||++|.++...++++..... +..+.||||++.++++...
T Consensus 164 ~~iayv~~~-------~~~~~L~~~D~dG~~~~~l~~~~~~-----v~~p~wSPDG~~la~~s~~--------------- 216 (427)
T PRK02889 164 TRIAYVIKT-------GNRYQLQISDADGQNAQSALSSPEP-----IISPAWSPDGTKLAYVSFE--------------- 216 (427)
T ss_pred cEEEEEEcc-------CCccEEEEECCCCCCceEeccCCCC-----cccceEcCCCCEEEEEEcc---------------
Confidence 579998743 3468999999988888888755442 5689999998766664210
Q ss_pred eeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCcc
Q 007338 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSY 200 (607)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~ 200 (607)
. ...+||++++ +|+.++++.. .....+.|||||++|+|+.....
T Consensus 217 --------~-----------------------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g--- 262 (427)
T PRK02889 217 --------S-----------------------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDG--- 262 (427)
T ss_pred --------C-----------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC---
Confidence 0 1357999999 6777777643 34457899999999999865321
Q ss_pred ccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEe
Q 007338 201 KVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYT 280 (607)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~ 280 (607)
..+||++|++++..++|+... .....+.|||||+. ++|.... .+ ...++.
T Consensus 263 -------~~~Iy~~d~~~~~~~~lt~~~-------------~~~~~~~wSpDG~~-l~f~s~~-~g--------~~~Iy~ 312 (427)
T PRK02889 263 -------NSQIYTVNADGSGLRRLTQSS-------------GIDTEPFFSPDGRS-IYFTSDR-GG--------APQIYR 312 (427)
T ss_pred -------CceEEEEECCCCCcEECCCCC-------------CCCcCeEEcCCCCE-EEEEecC-CC--------CcEEEE
Confidence 247999999988888876411 11235899999995 4554321 11 134666
Q ss_pred ccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeee
Q 007338 281 QPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTR 360 (607)
Q Consensus 281 ~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 360 (607)
++. .+++.+.++........+.|||||+.|++.... .+..+|+++|+.+ ++.+.++..... ..+.|
T Consensus 313 ~~~---~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~--g~~~~lt~~~~~--------~~p~~ 378 (427)
T PRK02889 313 MPA---SGGAAQRVTFTGSYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLAT--GQVTALTDTTRD--------ESPSF 378 (427)
T ss_pred EEC---CCCceEEEecCCCCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCC--CCeEEccCCCCc--------cCceE
Confidence 553 222445554333334568999999988876532 2345899999988 345666532111 12899
Q ss_pred CCCCCEEEEEeee
Q 007338 361 TSTGTNVIAKIKK 373 (607)
Q Consensus 361 ~~dg~~~~~~~~~ 373 (607)
+|||+.|+|....
T Consensus 379 spdg~~l~~~~~~ 391 (427)
T PRK02889 379 APNGRYILYATQQ 391 (427)
T ss_pred CCCCCEEEEEEec
Confidence 9999999998764
No 18
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=2e-15 Score=159.67 Aligned_cols=231 Identities=16% Similarity=0.177 Sum_probs=153.5
Q ss_pred CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCC
Q 007338 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (607)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~ 121 (607)
+.+|||++..... .....+||++|.+++..++||..... +..+.|+||++.+++....
T Consensus 167 ~~~ia~v~~~~~~---~~~~~~l~i~D~~g~~~~~lt~~~~~-----v~~p~wSpDg~~la~~s~~-------------- 224 (433)
T PRK04922 167 WTRIAYVTVSGAG---GAMRYALQVADSDGYNPQTILRSAEP-----ILSPAWSPDGKKLAYVSFE-------------- 224 (433)
T ss_pred cceEEEEEEeCCC---CCceEEEEEECCCCCCceEeecCCCc-----cccccCCCCCCEEEEEecC--------------
Confidence 5678998764211 13357899999998888999865432 5689999998766654210
Q ss_pred CeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCc
Q 007338 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (607)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~ 199 (607)
+ ...+||++++ +|+.++++.. .....+.|||||++|+|+.....
T Consensus 225 --------~------------------------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g-- 270 (433)
T PRK04922 225 --------R------------------------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDG-- 270 (433)
T ss_pred --------C------------------------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCC--
Confidence 0 1357899999 5677777643 33347899999999999864321
Q ss_pred cccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEE
Q 007338 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (607)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~ 279 (607)
..+||++|+++++.++++... .....++|||||+. ++|.....+ ...+|
T Consensus 271 --------~~~Iy~~d~~~g~~~~lt~~~-------------~~~~~~~~spDG~~-l~f~sd~~g---------~~~iy 319 (433)
T PRK04922 271 --------NPEIYVMDLGSRQLTRLTNHF-------------GIDTEPTWAPDGKS-IYFTSDRGG---------RPQIY 319 (433)
T ss_pred --------CceEEEEECCCCCeEECccCC-------------CCccceEECCCCCE-EEEEECCCC---------CceEE
Confidence 237999999999888876421 01235899999984 445432111 13567
Q ss_pred eccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCee
Q 007338 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (607)
Q Consensus 280 ~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (607)
.++. ..| +.+.++........+.|||||+.|++... ..+..+|+++|+++ +..+.|+...... .+.
T Consensus 320 ~~dl--~~g-~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~--g~~~~Lt~~~~~~--------~p~ 385 (433)
T PRK04922 320 RVAA--SGG-SAERLTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLST--GSVRTLTPGSLDE--------SPS 385 (433)
T ss_pred EEEC--CCC-CeEEeecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCC--CCeEECCCCCCCC--------Cce
Confidence 6663 222 55556543334457999999998877643 23446899999988 4556665332111 278
Q ss_pred eCCCCCEEEEEeee
Q 007338 360 RTSTGTNVIAKIKK 373 (607)
Q Consensus 360 ~~~dg~~~~~~~~~ 373 (607)
|+|||+.++|....
T Consensus 386 ~spdG~~i~~~s~~ 399 (433)
T PRK04922 386 FAPNGSMVLYATRE 399 (433)
T ss_pred ECCCCCEEEEEEec
Confidence 99999999888764
No 19
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.72 E-value=5.8e-15 Score=156.60 Aligned_cols=232 Identities=15% Similarity=0.161 Sum_probs=154.3
Q ss_pred CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCC
Q 007338 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (607)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~ 120 (607)
-..+|||++..... ..+..+||++|.+++..++++..... +..+.||||++.|+++...
T Consensus 161 f~~~ia~v~~~~~~---~~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~wSpDG~~la~~s~~------------- 219 (430)
T PRK00178 161 FSTRILYVTAERFS---VNTRYTLQRSDYDGARAVTLLQSREP-----ILSPRWSPDGKRIAYVSFE------------- 219 (430)
T ss_pred ceeeEEEEEeeCCC---CCcceEEEEECCCCCCceEEecCCCc-----eeeeeECCCCCEEEEEEcC-------------
Confidence 45679998754211 13456899999999888888755432 5689999998766554210
Q ss_pred CCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCC
Q 007338 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPY 198 (607)
Q Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~ 198 (607)
. ...+||++++ +|+.++|+... ....+.|||||++|+|......
T Consensus 220 ---------------------------~------~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g- 265 (430)
T PRK00178 220 ---------------------------Q------KRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDG- 265 (430)
T ss_pred ---------------------------C------CCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCC-
Confidence 0 1358999999 67888887543 3447899999999999865321
Q ss_pred ccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceE
Q 007338 199 SYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDII 278 (607)
Q Consensus 199 ~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (607)
..+||++|+++++.++|+... .....+.|||||+. ++|....+ + ...+
T Consensus 266 ---------~~~Iy~~d~~~~~~~~lt~~~-------------~~~~~~~~spDg~~-i~f~s~~~-g--------~~~i 313 (430)
T PRK00178 266 ---------NPEIYVMDLASRQLSRVTNHP-------------AIDTEPFWGKDGRT-LYFTSDRG-G--------KPQI 313 (430)
T ss_pred ---------CceEEEEECCCCCeEEcccCC-------------CCcCCeEECCCCCE-EEEEECCC-C--------CceE
Confidence 237999999999888886521 11235899999985 45543211 1 1356
Q ss_pred EeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCe
Q 007338 279 YTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMM 358 (607)
Q Consensus 279 ~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~ 358 (607)
+.++. ..| +.+.++........+.|||||+.+++.... .+..+|+++|+++ +..+.|+...... .+
T Consensus 314 y~~d~--~~g-~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~t--g~~~~lt~~~~~~--------~p 379 (430)
T PRK00178 314 YKVNV--NGG-RAERVTFVGNYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQR--GSVRILTDTSLDE--------SP 379 (430)
T ss_pred EEEEC--CCC-CEEEeecCCCCccceEECCCCCEEEEEEcc-CCceEEEEEECCC--CCEEEccCCCCCC--------Cc
Confidence 66653 233 555555333344578999999988776532 2346899999998 4556665421111 17
Q ss_pred eeCCCCCEEEEEeee
Q 007338 359 TRTSTGTNVIAKIKK 373 (607)
Q Consensus 359 ~~~~dg~~~~~~~~~ 373 (607)
.|+|||+.++|....
T Consensus 380 ~~spdg~~i~~~~~~ 394 (430)
T PRK00178 380 SVAPNGTMLIYATRQ 394 (430)
T ss_pred eECCCCCEEEEEEec
Confidence 899999999988764
No 20
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.8e-15 Score=160.05 Aligned_cols=203 Identities=14% Similarity=0.198 Sum_probs=141.5
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||+.++. +|+.++++.++. ....|.|||||++|+|+... ++..+||++|+++++.+++|....
T Consensus 242 ~~L~~~dl~----tg~~~~lt~~~g--~~~~~~wSPDG~~La~~~~~-------~g~~~Iy~~dl~tg~~~~lt~~~~-- 306 (448)
T PRK04792 242 AEIFVQDIY----TQVREKVTSFPG--INGAPRFSPDGKKLALVLSK-------DGQPEIYVVDIATKALTRITRHRA-- 306 (448)
T ss_pred cEEEEEECC----CCCeEEecCCCC--CcCCeeECCCCCEEEEEEeC-------CCCeEEEEEECCCCCeEECccCCC--
Confidence 469999987 788888886543 35689999999999998764 456899999999999999986432
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
....+.|+||++.++++... + ...+||++++
T Consensus 307 ---~~~~p~wSpDG~~I~f~s~~---------------------------------------~-------g~~~Iy~~dl 337 (448)
T PRK04792 307 ---IDTEPSWHPDGKSLIFTSER---------------------------------------G-------GKPQIYRVNL 337 (448)
T ss_pred ---CccceEECCCCCEEEEEECC---------------------------------------C-------CCceEEEEEC
Confidence 14578999998866664210 0 1258999999
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+|+.++|+... .....+|||||++|+|+....+ ..+|+++|+++++.+.|+...
T Consensus 338 ~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g----------~~~I~~~dl~~g~~~~lt~~~-------------- 393 (448)
T PRK04792 338 ASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG----------KFNIARQDLETGAMQVLTSTR-------------- 393 (448)
T ss_pred CCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC----------ceEEEEEECCCCCeEEccCCC--------------
Confidence 57888886433 3346799999999999865321 137899999999888776411
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcC
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCD 308 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~ 308 (607)
....++|||||+. |+|....+ + +..+++++ .+|...+.+.........|+|||
T Consensus 394 ~d~~ps~spdG~~-I~~~~~~~-g--------~~~l~~~~---~~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 394 LDESPSVAPNGTM-VIYSTTYQ-G--------KQVLAAVS---IDGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCCceECCCCCE-EEEEEecC-C--------ceEEEEEE---CCCCceEECcCCCCCcCCCccCC
Confidence 1135799999984 44543321 1 23455554 34534455544445667899987
No 21
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.67 E-value=2e-13 Score=133.97 Aligned_cols=374 Identities=15% Similarity=0.182 Sum_probs=201.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEe-ecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSV-RVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~-~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
.|||.++|+ .|++++||. .-.-+.+|++||||++|||++ .... +....+||+++.++|+++++|....
T Consensus 59 DdlWe~slk----~g~~~ritS--~lGVvnn~kf~pdGrkvaf~rv~~~s----s~~taDly~v~~e~Ge~kRiTyfGr- 127 (668)
T COG4946 59 DDLWEYSLK----DGKPLRITS--GLGVVNNPKFSPDGRKVAFSRVMLGS----SLQTADLYVVPSEDGEAKRITYFGR- 127 (668)
T ss_pred hHHHHhhhc----cCCeeEEec--ccceeccccCCCCCcEEEEEEEEecC----CCccccEEEEeCCCCcEEEEEEecc-
Confidence 589999998 899999994 333689999999999999954 3321 2456899999999999999998743
Q ss_pred ccccccc-ceEEecCCeEEEEEecCC----CCCC-------CCCccCCCCCeeeecC-Cccccccc--------------
Q 007338 84 CLNAVFG-SFVWVNNSTLLIFTIPSS----RRDP-------PKKTMVPLGPKIQSNE-QKNIIISR-------------- 136 (607)
Q Consensus 84 ~~~~~~~-~~~Wspd~~~l~~~~~~~----~~~~-------~~~~~~~~~~~~~~~~-~g~~~~~~-------------- 136 (607)
. +. -..|+||+++++.+.-.. ...+ -+...++-|+....-. +|.....|
T Consensus 128 ~----fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~LnlGpathiv~~dg~ivigRntydLP~WK~YkGG 203 (668)
T COG4946 128 R----FTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNLGPATHIVIKDGIIVIGRNTYDLPHWKGYKGG 203 (668)
T ss_pred c----cceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceeeeccCCceeeEEEeCCEEEEccCcccCcccccccCC
Confidence 2 33 457999999988762110 0000 0011233333221110 01100000
Q ss_pred -------------cccccccCccc--------cc-ce--eeeccceEEEEeCCC-CeeecCCCCceeeeeeCCCCceEEE
Q 007338 137 -------------MTDNLLKDEYD--------ES-LF--DYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLI 191 (607)
Q Consensus 137 -------------~~~~~~~~~~~--------~~-~~--~~~~~~~l~~~~~~g-~~~~lt~~~~~~~~~~SpDg~~i~~ 191 (607)
++...+..+.. ++ .| +....++||.+|++| ..++-|....+..=..+.||++|+|
T Consensus 204 trGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsDGkrIvF 283 (668)
T COG4946 204 TRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSDGKRIVF 283 (668)
T ss_pred ccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCCCcEEEE
Confidence 00000000000 00 00 011456788888877 4565554433322345779999999
Q ss_pred EEccCCCccccCCCcCCccEEEEeCCCCeeEEec-cCCCCCCC--Ccccc--------cccCCCCcceeecCCC------
Q 007338 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC-DLPPAEDI--PVCYN--------SVREGMRSISWRADKP------ 254 (607)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~--~~~~~--------~~~~~~~~~~wspdg~------ 254 (607)
... .+||++|.++..+..|. .+|+..+. +...+ +...|. -++.-.-|+
T Consensus 284 q~~--------------GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd-~ia~VSRGkaFi~~~ 348 (668)
T COG4946 284 QNA--------------GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGD-YIALVSRGKAFIMRP 348 (668)
T ss_pred ecC--------------CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCc-EEEEEecCcEEEECC
Confidence 853 37999999988888774 33443111 11000 000000 011111111
Q ss_pred -----------ceEEEEEeecCCCCc-cccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 255 -----------STLYWVEAQDRGDAN-VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 255 -----------~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
+.+.|.......... +-....+.+-+.+ ..|.+.+.+...-+.+..+..++||+.++... .
T Consensus 349 ~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd---~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN----d 421 (668)
T COG4946 349 WDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYD---KDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN----D 421 (668)
T ss_pred CCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEe---cCCceEEEeeCCccceEEEEEcCCCcEEEEEc----C
Confidence 112222222111100 1122334444444 23334455544445677888999999655442 2
Q ss_pred ceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeec
Q 007338 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 402 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~ 402 (607)
+..||++|+++ ++++.+- .+-.....+ +.|+|+++.+++.-- .. .|. +-+..+|.
T Consensus 422 r~el~vididn--gnv~~id-kS~~~lItd-----f~~~~nsr~iAYafP-----~g-y~t-----------q~Iklydm 476 (668)
T COG4946 422 RFELWVIDIDN--GNVRLID-KSEYGLITD-----FDWHPNSRWIAYAFP-----EG-YYT-----------QSIKLYDM 476 (668)
T ss_pred ceEEEEEEecC--CCeeEec-ccccceeEE-----EEEcCCceeEEEecC-----cc-eee-----------eeEEEEec
Confidence 46899999999 5666653 221111112 899999998876532 11 110 12334677
Q ss_pred CCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccc
Q 007338 403 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (607)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~ 452 (607)
.+++.-.++...+. . . .++|.||+++++|.....-.|.
T Consensus 477 ~~~Kiy~vTT~ta~---D-f--------sPaFD~d~ryLYfLs~RsLdPs 514 (668)
T COG4946 477 DGGKIYDVTTPTAY---D-F--------SPAFDPDGRYLYFLSARSLDPS 514 (668)
T ss_pred CCCeEEEecCCccc---c-c--------CcccCCCCcEEEEEeccccCCC
Confidence 67777666544321 1 1 2467888888888776655554
No 22
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.66 E-value=4.8e-14 Score=149.24 Aligned_cols=214 Identities=18% Similarity=0.193 Sum_probs=145.7
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||+.+.. ++..++|+.. ......|.|||||++|||.... .+..+||++|+++|+.++++.....
T Consensus 170 ~~l~~~d~~----g~~~~~l~~~--~~~~~~p~~Spdg~~la~~~~~-------~~~~~i~v~d~~~g~~~~~~~~~~~- 235 (417)
T TIGR02800 170 YELQVADYD----GANPQTITRS--REPILSPAWSPDGQKLAYVSFE-------SGKPEIYVQDLATGQREKVASFPGM- 235 (417)
T ss_pred ceEEEEcCC----CCCCEEeecC--CCceecccCCCCCCEEEEEEcC-------CCCcEEEEEECCCCCEEEeecCCCC-
Confidence 468888865 6778888742 2257899999999999998764 3457899999999988777644331
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+||++.++++... . ...+||.+++
T Consensus 236 ----~~~~~~spDg~~l~~~~~~-----------------------~-----------------------~~~~i~~~d~ 265 (417)
T TIGR02800 236 ----NGAPAFSPDGSKLAVSLSK-----------------------D-----------------------GNPDIYVMDL 265 (417)
T ss_pred ----ccceEECCCCCEEEEEECC-----------------------C-----------------------CCccEEEEEC
Confidence 4568999998765553110 0 1247888888
Q ss_pred -CCCeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DGTAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
+++.++|+... ....+.|+|||++|+|.+.... ...||++++++++.+++..
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g----------~~~iy~~d~~~~~~~~l~~---------------- 319 (417)
T TIGR02800 266 DGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG----------SPQIYMMDADGGEVRRLTF---------------- 319 (417)
T ss_pred CCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCC----------CceEEEEECCCCCEEEeec----------------
Confidence 56777776543 3346799999999999875321 1379999988776554421
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecccc
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
.......+.|+|||+.+++.... .+
T Consensus 320 ------------------------------------------------------~~~~~~~~~~spdg~~i~~~~~~-~~ 344 (417)
T TIGR02800 320 ------------------------------------------------------RGGYNASPSWSPDGDLIAFVHRE-GG 344 (417)
T ss_pred ------------------------------------------------------CCCCccCeEECCCCCEEEEEEcc-CC
Confidence 00112347889998877765432 24
Q ss_pred ceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
..+|+++|+++ +..+.+...... ..+.|+|||+.|++....
T Consensus 345 ~~~i~~~d~~~--~~~~~l~~~~~~--------~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 345 GFNIAVMDLDG--GGERVLTDTGLD--------ESPSFAPNGRMILYATTR 385 (417)
T ss_pred ceEEEEEeCCC--CCeEEccCCCCC--------CCceECCCCCEEEEEEeC
Confidence 56899999988 344555422111 127899999999888764
No 23
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.4e-14 Score=145.91 Aligned_cols=178 Identities=16% Similarity=0.176 Sum_probs=118.3
Q ss_pred CCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCcee----eEe-----cCCCCC
Q 007338 404 TGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSS----QIT-----NFPHPY 474 (607)
Q Consensus 404 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~----~Lt-----~~~~~~ 474 (607)
.|++.+|++.. +..- ..++.+=+.++..+++-..|+.+.++.+..++-- +.. ....
T Consensus 540 ~g~~~rlt~~g----~sh~---------~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~-- 604 (867)
T KOG2281|consen 540 PGEIARLTEPG----YSHS---------CELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGA-- 604 (867)
T ss_pred CCceeeccCCC----cccc---------hhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcC--
Confidence 68888886543 1111 1123333557777888999999988877544311 111 1111
Q ss_pred CcccCC-ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc
Q 007338 475 PTLASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA 553 (607)
Q Consensus 475 ~~~~~~-~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~ 553 (607)
...... .+|.|+|++.-|.+++|.+|||.+|+++||| |+++++|+|| .=|... +.|...-+.-+++||+
T Consensus 605 ~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~~pgkkY--ptvl~VYGGP------~VQlVn--nsfkgi~ylR~~~Las 674 (867)
T KOG2281|consen 605 PPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNFQPGKKY--PTVLNVYGGP------GVQLVN--NSFKGIQYLRFCRLAS 674 (867)
T ss_pred CCCCccCChhheeeecCCCcEEEEEEEccccCCCCCCC--ceEEEEcCCC------ceEEee--ccccceehhhhhhhhh
Confidence 111123 6799999999999999999999999999998 9999999753 222221 2444333455789999
Q ss_pred cCeEEEeCCCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHhc-cccccccccc
Q 007338 554 RRFAVLAGPSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQAE-LLLEDTLMEH 606 (607)
Q Consensus 554 ~GY~Vl~~~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 606 (607)
+||+|+.--++++.-+|.+ ...+.++-.+.|...|.+||++++ ++|-|||--|
T Consensus 675 lGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vh 732 (867)
T KOG2281|consen 675 LGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVH 732 (867)
T ss_pred cceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEe
Confidence 9999996111111113443 344555666889999999999998 9999998766
No 24
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.9e-13 Score=144.46 Aligned_cols=245 Identities=17% Similarity=0.152 Sum_probs=157.1
Q ss_pred CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCC
Q 007338 42 GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG 121 (607)
Q Consensus 42 G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~ 121 (607)
+++|||++.+... ....+||++|.++...+++|..... +..+.||||++.+++....
T Consensus 168 ~~ria~v~~~~~~----~~~~~i~i~d~dg~~~~~lt~~~~~-----v~~p~wSPDG~~la~~s~~-------------- 224 (429)
T PRK01742 168 RTRIAYVVQKNGG----SQPYEVRVADYDGFNQFIVNRSSQP-----LMSPAWSPDGSKLAYVSFE-------------- 224 (429)
T ss_pred CCEEEEEEEEcCC----CceEEEEEECCCCCCceEeccCCCc-----cccceEcCCCCEEEEEEec--------------
Confidence 6899998865211 2247999999998888888765432 5789999998766664210
Q ss_pred CeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCc
Q 007338 122 PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYS 199 (607)
Q Consensus 122 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~ 199 (607)
. ...+||++++ +|+.+.++.. .....++|||||++|++......
T Consensus 225 ---------~-----------------------~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g-- 270 (429)
T PRK01742 225 ---------N-----------------------KKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDG-- 270 (429)
T ss_pred ---------C-----------------------CCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCC--
Confidence 0 1357888888 5666666532 23347899999999999864321
Q ss_pred cccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEE
Q 007338 200 YKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIY 279 (607)
Q Consensus 200 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~ 279 (607)
..+||++|+++++.++|+.
T Consensus 271 --------~~~Iy~~d~~~~~~~~lt~----------------------------------------------------- 289 (429)
T PRK01742 271 --------VLNIYVMGANGGTPSQLTS----------------------------------------------------- 289 (429)
T ss_pred --------cEEEEEEECCCCCeEeecc-----------------------------------------------------
Confidence 1368999988876655532
Q ss_pred eccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCee
Q 007338 280 TQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMT 359 (607)
Q Consensus 280 ~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 359 (607)
.......+.|||||+.|++.... .+..+||.+++.++ ..+.+. .. . + .+.
T Consensus 290 -----------------~~~~~~~~~wSpDG~~i~f~s~~-~g~~~I~~~~~~~~--~~~~l~-~~--~-~------~~~ 339 (429)
T PRK01742 290 -----------------GAGNNTEPSWSPDGQSILFTSDR-SGSPQVYRMSASGG--GASLVG-GR--G-Y------SAQ 339 (429)
T ss_pred -----------------CCCCcCCEEECCCCCEEEEEECC-CCCceEEEEECCCC--CeEEec-CC--C-C------Ccc
Confidence 11123457899998877765432 24468999998773 333331 11 1 1 167
Q ss_pred eCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCC
Q 007338 360 RTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQL 439 (607)
Q Consensus 360 ~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 439 (607)
|+|||+.|++.... + +..+|+.+|+.+.++... .. ..++|+||+.
T Consensus 340 ~SpDG~~ia~~~~~----~------------------i~~~Dl~~g~~~~lt~~~-----~~--------~~~~~sPdG~ 384 (429)
T PRK01742 340 ISADGKTLVMINGD----N------------------VVKQDLTSGSTEVLSSTF-----LD--------ESPSISPNGI 384 (429)
T ss_pred CCCCCCEEEEEcCC----C------------------EEEEECCCCCeEEecCCC-----CC--------CCceECCCCC
Confidence 99999998876421 1 224677777766553221 00 1246899999
Q ss_pred EEEEEeecccccceEEEEecCCCceeeEecC
Q 007338 440 KILTSKESKTEITQYHILSWPLKKSSQITNF 470 (607)
Q Consensus 440 ~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~ 470 (607)
.+++.... ..-..+++.+..+...++|+..
T Consensus 385 ~i~~~s~~-g~~~~l~~~~~~G~~~~~l~~~ 414 (429)
T PRK01742 385 MIIYSSTQ-GLGKVLQLVSADGRFKARLPGS 414 (429)
T ss_pred EEEEEEcC-CCceEEEEEECCCCceEEccCC
Confidence 88877653 4445577777666666777643
No 25
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=99.58 E-value=2.8e-11 Score=125.66 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=107.6
Q ss_pred cCCEEEEEeecccccceEEEEecCCCceeeEecCCCCC-CcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCE
Q 007338 437 NQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPY-PTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (607)
Q Consensus 437 d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~-~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (607)
+..++.+.++|.+.|..+|-+|+.+++.+.|-...-+. .+...-..+.+..++.||.+|+--|++-.+++ ++.+-|+
T Consensus 373 ~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~~--~~g~~p~ 450 (682)
T COG1770 373 DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDTK--LDGSAPL 450 (682)
T ss_pred CCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEecccC--CCCCCcE
Confidence 55789999999999999999999999988886553221 22222378999999999999999999888765 3456799
Q ss_pred EEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccC--eEEEeCCCCceeccCCCCchhhHH---HH-----hhcH
Q 007338 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR--FAVLAGPSIPIIGEGLWSNWFQVQ---RL-----LLKK 585 (607)
Q Consensus 516 iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~G--Y~Vl~~~~~~~~g~g~~~~~~~~~---~~-----~~~~ 585 (607)
++++|+. | + +.-.| .|+ ...--|+.+| ||+.. ++.|++.|+.|=+ .+ ..|-
T Consensus 451 lLygYGa-Y------G-~s~~p-~Fs----~~~lSLlDRGfiyAIAH------VRGGgelG~~WYe~GK~l~K~NTf~DF 511 (682)
T COG1770 451 LLYGYGA-Y------G-ISMDP-SFS----IARLSLLDRGFVYAIAH------VRGGGELGRAWYEDGKLLNKKNTFTDF 511 (682)
T ss_pred EEEEecc-c------c-ccCCc-Ccc----cceeeeecCceEEEEEE------eecccccChHHHHhhhhhhccccHHHH
Confidence 9999963 1 1 11111 332 1134788999 55555 5456667777754 22 4589
Q ss_pred HHHHHHHHHhccccccccc
Q 007338 586 LFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 586 ~~~v~~~~~~~~~~~~~~~ 604 (607)
+++++.||++|+.+.+++.
T Consensus 512 Ia~a~~Lv~~g~~~~~~i~ 530 (682)
T COG1770 512 IAAARHLVKEGYTSPDRIV 530 (682)
T ss_pred HHHHHHHHHcCcCCccceE
Confidence 9999999999999998874
No 26
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.56 E-value=2.5e-12 Score=136.13 Aligned_cols=252 Identities=13% Similarity=0.140 Sum_probs=159.5
Q ss_pred cCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCC
Q 007338 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVP 119 (607)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~ 119 (607)
+.+.+++|++.... .+..+||++|..+++.++++..... ...+.||||++.+++....
T Consensus 153 ~~~~~~~~~~~~~~-----~~~~~l~~~d~~g~~~~~l~~~~~~-----~~~p~~Spdg~~la~~~~~------------ 210 (417)
T TIGR02800 153 AFSTRIAYVSKSGK-----SRRYELQVADYDGANPQTITRSREP-----ILSPAWSPDGQKLAYVSFE------------ 210 (417)
T ss_pred CcCCEEEEEEEeCC-----CCcceEEEEcCCCCCCEEeecCCCc-----eecccCCCCCCEEEEEEcC------------
Confidence 45788999886521 4568899999998888888754331 4578999998876664210
Q ss_pred CCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEccCC
Q 007338 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRP 197 (607)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~ 197 (607)
+ ...+|+++++ +|+.+.++.. .....+.|||||+.|+|+.....
T Consensus 211 ----------~------------------------~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 211 ----------S------------------------GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred ----------C------------------------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCC
Confidence 0 1247888888 5666666543 23346899999999999864321
Q ss_pred CccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCce
Q 007338 198 YSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDI 277 (607)
Q Consensus 198 ~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~ 277 (607)
..+||++++.++..++|+..
T Consensus 257 ----------~~~i~~~d~~~~~~~~l~~~-------------------------------------------------- 276 (417)
T TIGR02800 257 ----------NPDIYVMDLDGKQLTRLTNG-------------------------------------------------- 276 (417)
T ss_pred ----------CccEEEEECCCCCEEECCCC--------------------------------------------------
Confidence 23799999988765554320
Q ss_pred EEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCC
Q 007338 278 IYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357 (607)
Q Consensus 278 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (607)
......+.|+|||+.|++.... .+..+||++|+.++ +.+.+...... ...
T Consensus 277 --------------------~~~~~~~~~s~dg~~l~~~s~~-~g~~~iy~~d~~~~--~~~~l~~~~~~-------~~~ 326 (417)
T TIGR02800 277 --------------------PGIDTEPSWSPDGKSIAFTSDR-GGSPQIYMMDADGG--EVRRLTFRGGY-------NAS 326 (417)
T ss_pred --------------------CCCCCCEEECCCCCEEEEEECC-CCCceEEEEECCCC--CEEEeecCCCC-------ccC
Confidence 0011246788888877665432 23458999999873 44555421100 012
Q ss_pred eeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCccccccc
Q 007338 358 MTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLN 437 (607)
Q Consensus 358 ~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d 437 (607)
+.|+|||+.+++.....+ ... +..+++.++..+.+.... .. ..+.|++|
T Consensus 327 ~~~spdg~~i~~~~~~~~--~~~----------------i~~~d~~~~~~~~l~~~~------~~-------~~p~~spd 375 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGG--GFN----------------IAVMDLDGGGERVLTDTG------LD-------ESPSFAPN 375 (417)
T ss_pred eEECCCCCEEEEEEccCC--ceE----------------EEEEeCCCCCeEEccCCC------CC-------CCceECCC
Confidence 789999999888765321 222 335677666655443211 00 02468999
Q ss_pred CCEEEEEeecccccceEEEEecCCCceeeEec
Q 007338 438 QLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (607)
Q Consensus 438 ~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~ 469 (607)
++.+++....... ..+++.+..+...+.|+.
T Consensus 376 g~~l~~~~~~~~~-~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 376 GRMILYATTRGGR-GVLGLVSTDGRFRARLPL 406 (417)
T ss_pred CCEEEEEEeCCCc-EEEEEEECCCceeeECCC
Confidence 9999888776544 578888866555555553
No 27
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.56 E-value=4.4e-13 Score=138.70 Aligned_cols=217 Identities=18% Similarity=0.187 Sum_probs=146.5
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
....||+.|.. +-..+.++ ........|.|||||+.|+|..-.. .++..+|++++++|+..++.....
T Consensus 171 ~~~~l~~~D~d----g~~~~~l~--~~~~~~~~p~ws~~~~~~~y~~f~~------~~~~~i~~~~l~~g~~~~i~~~~g 238 (425)
T COG0823 171 LPYELALGDYD----GYNQQKLT--DSGSLILTPAWSPDGKKLAYVSFEL------GGCPRIYYLDLNTGKRPVILNFNG 238 (425)
T ss_pred CCceEEEEccC----CcceeEec--ccCcceeccccCcCCCceEEEEEec------CCCceEEEEeccCCccceeeccCC
Confidence 34567777753 45555665 3333578899999999999997641 233799999999998877765332
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
....++|||||+.+++.... + ...+||++
T Consensus 239 -----~~~~P~fspDG~~l~f~~~r---------------------------------------d-------g~~~iy~~ 267 (425)
T COG0823 239 -----NNGAPAFSPDGSKLAFSSSR---------------------------------------D-------GSPDIYLM 267 (425)
T ss_pred -----ccCCccCCCCCCEEEEEECC---------------------------------------C-------CCccEEEE
Confidence 14689999998766654210 0 24689999
Q ss_pred eCCC-CeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 163 SLDG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 163 ~~~g-~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
|+.+ +..+|+... ......|||||++|+|++.... ...||+++++++..++++.
T Consensus 268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G----------~p~I~~~~~~g~~~~riT~-------------- 323 (425)
T COG0823 268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGG----------RPQIYLYDLEGSQVTRLTF-------------- 323 (425)
T ss_pred cCCCCcceecccCCccccCccCCCCCCEEEEEeCCCC----------CcceEEECCCCCceeEeec--------------
Confidence 9954 666787653 3358999999999999986532 2379999999987766543
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~ 320 (607)
.......+.|||||+.|++....
T Consensus 324 --------------------------------------------------------~~~~~~~p~~SpdG~~i~~~~~~- 346 (425)
T COG0823 324 --------------------------------------------------------SGGGNSNPVWSPDGDKIVFESSS- 346 (425)
T ss_pred --------------------------------------------------------cCCCCcCccCCCCCCEEEEEecc-
Confidence 01112257888888888887622
Q ss_pred ccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 321 TSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 321 ~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.+...+.+.|+.+.. ..+.+....... .++|.++|+.+.+...
T Consensus 347 ~g~~~i~~~~~~~~~-~~~~lt~~~~~e--------~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 347 GGQWDIDKNDLASGG-KIRILTSTYLNE--------SPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCceeeEEeccCCCC-cEEEccccccCC--------CCCcCCCCceEEEecc
Confidence 333567778887742 245543221111 2789999998887764
No 28
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.52 E-value=2.9e-11 Score=120.06 Aligned_cols=345 Identities=12% Similarity=0.121 Sum_probs=157.4
Q ss_pred ccCCCCCCCeeeeecCCCC---CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccccc
Q 007338 12 LLPDDSLGPEKEVHGYPDG---AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAV 88 (607)
Q Consensus 12 ~~~~~~~g~~~~lt~~~~~---~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~ 88 (607)
..|+..+-+.++||..+.. .+..++.|++||++|+|.+.+ ++..+||++|+++++++|||+.+...
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~-------dg~~nly~lDL~t~~i~QLTdg~g~~---- 82 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF-------DGNRNLYLLDLATGEITQLTDGPGDN---- 82 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T-------TSS-EEEEEETTT-EEEE---SS-B-----
T ss_pred EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc-------CCCcceEEEEcccCEEEECccCCCCC----
Confidence 3445556677788753331 257889999999999998876 67899999999999999999765321
Q ss_pred ccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC
Q 007338 89 FGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT 167 (607)
Q Consensus 89 ~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~ 167 (607)
.....++++++.+|+.. ...+|+.+++ +.+
T Consensus 83 ~~g~~~s~~~~~~~Yv~-------------------------------------------------~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 83 TFGGFLSPDDRALYYVK-------------------------------------------------NGRSLRRVDLDTLE 113 (386)
T ss_dssp TTT-EE-TTSSEEEEEE-------------------------------------------------TTTEEEEEETTT--
T ss_pred ccceEEecCCCeEEEEE-------------------------------------------------CCCeEEEEECCcCc
Confidence 22567788866554421 0136677787 555
Q ss_pred eeecC-CCC-cee--eeeeCCCCceEEEEEccCCCccccC---------CCcCCccEEEEeCCCCeeEEeccCCCCCCCC
Q 007338 168 AKDFG-TPA-VYT--AVEPSPDQKYVLITSMHRPYSYKVP---------CARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (607)
Q Consensus 168 ~~~lt-~~~-~~~--~~~~SpDg~~i~~~~~~~~~~~~~~---------~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (607)
.+.|. .+. ... ......|++.++.....+......+ ..+-...|+.+|+++|+.+.|.+..
T Consensus 114 ~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~------ 187 (386)
T PF14583_consen 114 ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT------ 187 (386)
T ss_dssp EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES------
T ss_pred EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC------
Confidence 55542 222 222 3333557777766654322110000 0012458999999999999875410
Q ss_pred cccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeec--CcccceeeEcCCCcE
Q 007338 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL--DLRFRSVSWCDDSLA 312 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~--~~~~~~~~ws~Dg~~ 312 (607)
.-.-.+.+||.-...|.|-- +|.+. .+ ...+++++. +|...+.+... ....+.--|+|||..
T Consensus 188 -------~wlgH~~fsP~dp~li~fCH---EGpw~-~V--d~RiW~i~~---dg~~~~~v~~~~~~e~~gHEfw~~DG~~ 251 (386)
T PF14583_consen 188 -------DWLGHVQFSPTDPTLIMFCH---EGPWD-LV--DQRIWTINT---DGSNVKKVHRRMEGESVGHEFWVPDGST 251 (386)
T ss_dssp -------S-EEEEEEETTEEEEEEEEE----S-TT-TS--S-SEEEEET---TS---EESS---TTEEEEEEEE-TTSS-
T ss_pred -------ccccCcccCCCCCCEEEEec---cCCcc-ee--ceEEEEEEc---CCCcceeeecCCCCcccccccccCCCCE
Confidence 00113778886665444421 22211 11 125666663 44334444332 223556779999998
Q ss_pred EEEEEeccc-cceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCC
Q 007338 313 LVNETWYKT-SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPE 391 (607)
Q Consensus 313 l~~~~~~~~-~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~ 391 (607)
|.+...... ...-|+.+|+.+. +.+.+....... . +.-++||+.++--..+ ....+ ...+...-
T Consensus 252 i~y~~~~~~~~~~~i~~~d~~t~--~~~~~~~~p~~~---H-----~~ss~Dg~L~vGDG~d---~p~~v--~~~~~~~~ 316 (386)
T PF14583_consen 252 IWYDSYTPGGQDFWIAGYDPDTG--ERRRLMEMPWCS---H-----FMSSPDGKLFVGDGGD---APVDV--ADAGGYKI 316 (386)
T ss_dssp EEEEEEETTT--EEEEEE-TTT----EEEEEEE-SEE---E-----EEE-TTSSEEEEEE--------------------
T ss_pred EEEEeecCCCCceEEEeeCCCCC--CceEEEeCCcee---e-----eEEcCCCCEEEecCCC---CCccc--ccccccee
Confidence 888765332 3446788999884 444443221111 0 4457888864322111 01111 01111122
Q ss_pred CCcceeEeeecCCCCeeEEeecCCcccceeeeeeec--C---CCcccccccCCEEEEEeecccccceEEEEecC
Q 007338 392 GNIPFLDLFDINTGSKERIWESNREKYFETAVALVF--G---QGEEDINLNQLKILTSKESKTEITQYHILSWP 460 (607)
Q Consensus 392 ~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~--~---~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~ 460 (607)
.+.++|+.++++.++...|-.-.. -..+.. . ...++||||+++++|+..- ..++.||+++++
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~------sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~-~G~~~vY~v~i~ 383 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDT------SWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM-EGPPAVYLVEIP 383 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------------BTTBSSTT----EE-TTSSEEEEEE-T-TSS-EEEEEE--
T ss_pred cCCcEEEEeccccCceeeeeeccC------cceeecCCCccCCCCCccCCCCCEEEEECCC-CCCccEEEEeCc
Confidence 356678778887776555532110 000000 0 1246899999999886644 666779999865
No 29
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.48 E-value=1.3e-12 Score=135.09 Aligned_cols=164 Identities=18% Similarity=0.191 Sum_probs=120.4
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..+|++++. .|...++..+.. ....|+|||||++|||...+ ++..+||++|+.++...+||.....
T Consensus 218 ~~i~~~~l~----~g~~~~i~~~~g--~~~~P~fspDG~~l~f~~~r-------dg~~~iy~~dl~~~~~~~Lt~~~gi- 283 (425)
T COG0823 218 PRIYYLDLN----TGKRPVILNFNG--NNGAPAFSPDGSKLAFSSSR-------DGSPDIYLMDLDGKNLPRLTNGFGI- 283 (425)
T ss_pred ceEEEEecc----CCccceeeccCC--ccCCccCCCCCCEEEEEECC-------CCCccEEEEcCCCCcceecccCCcc-
Confidence 579999998 677777765443 58899999999999999987 6789999999999998888866542
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
...+.|+|||+.++|+++. . ...+||++++
T Consensus 284 ----~~~Ps~spdG~~ivf~Sdr---------------------~-------------------------G~p~I~~~~~ 313 (425)
T COG0823 284 ----NTSPSWSPDGSKIVFTSDR---------------------G-------------------------GRPQIYLYDL 313 (425)
T ss_pred ----ccCccCCCCCCEEEEEeCC---------------------C-------------------------CCcceEEECC
Confidence 3589999998877665311 0 2358999999
Q ss_pred CC-CeeecCCCC-ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe-eEEeccCCCCCCCCccccccc
Q 007338 165 DG-TAKDFGTPA-VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL-VRELCDLPPAEDIPVCYNSVR 241 (607)
Q Consensus 165 ~g-~~~~lt~~~-~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~~~~ 241 (607)
+| +++++|... ......|||||++|+|...... ...+...++.++. .+.++..
T Consensus 314 ~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g----------~~~i~~~~~~~~~~~~~lt~~-------------- 369 (425)
T COG0823 314 EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGG----------QWDIDKNDLASGGKIRILTST-------------- 369 (425)
T ss_pred CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCC----------ceeeEEeccCCCCcEEEcccc--------------
Confidence 65 778887643 3347899999999999973211 1257778887654 5555431
Q ss_pred CCCCcceeecCCCce
Q 007338 242 EGMRSISWRADKPST 256 (607)
Q Consensus 242 ~~~~~~~wspdg~~~ 256 (607)
.....++|+++|+.+
T Consensus 370 ~~~e~ps~~~ng~~i 384 (425)
T COG0823 370 YLNESPSWAPNGRMI 384 (425)
T ss_pred ccCCCCCcCCCCceE
Confidence 112358999999853
No 30
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.47 E-value=2.1e-11 Score=125.34 Aligned_cols=292 Identities=20% Similarity=0.240 Sum_probs=157.3
Q ss_pred ccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccC
Q 007338 39 SPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMV 118 (607)
Q Consensus 39 SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~ 118 (607)
||||++++|..+.... --......+|++|+++++.++|+.... ....+.||||++.+++...
T Consensus 1 S~d~~~~l~~~~~~~~-~r~s~~~~y~i~d~~~~~~~~l~~~~~-----~~~~~~~sP~g~~~~~v~~------------ 62 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQ-WRHSFKGDYYIYDIETGEITPLTPPPP-----KLQDAKWSPDGKYIAFVRD------------ 62 (353)
T ss_dssp -TTSSEEEEEEEEEEE-SSSEEEEEEEEEETTTTEEEESS-EET-----TBSEEEE-SSSTEEEEEET------------
T ss_pred CCCCCeEEEEECcEEe-eeeccceeEEEEecCCCceEECcCCcc-----ccccceeecCCCeeEEEec------------
Confidence 8999999997654110 001445789999999999999975411 2578999999887666421
Q ss_pred CCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCCC-------------------cee
Q 007338 119 PLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTPA-------------------VYT 178 (607)
Q Consensus 119 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~~-------------------~~~ 178 (607)
.+||+.++ +++.++||..+ ...
T Consensus 63 --------------------------------------~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~ 104 (353)
T PF00930_consen 63 --------------------------------------NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRS 104 (353)
T ss_dssp --------------------------------------TEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSB
T ss_pred --------------------------------------CceEEEECCCCCeEEeccccceeEEcCccceecccccccccc
Confidence 24444444 33444444321 124
Q ss_pred eeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-----eeEEeccCCCCCCCCcccccccCCCCcceeecCC
Q 007338 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-----LVRELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (607)
Q Consensus 179 ~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (607)
.+.|||||++|+|...+.. .+ ..+.+.+.... +...+.
T Consensus 105 ~~~WSpd~~~la~~~~d~~---~v------~~~~~~~~~~~~~~yp~~~~~~---------------------------- 147 (353)
T PF00930_consen 105 AVWWSPDSKYLAFLRFDER---EV------PEYPLPDYSPPDSQYPEVESIR---------------------------- 147 (353)
T ss_dssp SEEE-TTSSEEEEEEEE-T---TS-------EEEEEEESSSTESS-EEEEEE----------------------------
T ss_pred ceEECCCCCEEEEEEECCc---CC------ceEEeeccCCccccCCcccccc----------------------------
Confidence 6789999999999976532 11 13333332221 111110
Q ss_pred CceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceee------eecCcccceeeEcCCCcEE-EEEEeccccceEE
Q 007338 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEIL------HKLDLRFRSVSWCDDSLAL-VNETWYKTSQTRT 326 (607)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l------~~~~~~~~~~~ws~Dg~~l-~~~~~~~~~~~~l 326 (607)
....|+. +..-.+++++. ..+ +...+ ...+..+..+.|++|+..| +...++......|
T Consensus 148 --------YPk~G~~----np~v~l~v~~~--~~~-~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 148 --------YPKAGDP----NPRVSLFVVDL--ASG-KTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp ----------BTTS-------EEEEEEEES--SST-CCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred --------cCCCCCc----CCceEEEEEEC--CCC-cEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 0001110 01122333332 122 22111 1223456789999999844 4444555677788
Q ss_pred EEEcCCCCCCCceEeeeccccccccCCCCCCeeeC-CCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCC
Q 007338 327 WLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRT-STGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (607)
Q Consensus 327 ~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (607)
.++|+++ +..+.+.......-+.... .+.+. +++..+++....+| -.+|| .++.+++
T Consensus 213 ~~~d~~t--g~~~~~~~e~~~~Wv~~~~--~~~~~~~~~~~~l~~s~~~G--~~hly----------------~~~~~~~ 270 (353)
T PF00930_consen 213 VLCDAST--GETRVVLEETSDGWVDVYD--PPHFLGPDGNEFLWISERDG--YRHLY----------------LYDLDGG 270 (353)
T ss_dssp EEEEECT--TTCEEEEEEESSSSSSSSS--EEEE-TTTSSEEEEEEETTS--SEEEE----------------EEETTSS
T ss_pred EEEECCC--CceeEEEEecCCcceeeec--ccccccCCCCEEEEEEEcCC--CcEEE----------------EEccccc
Confidence 9999987 3445553211111010001 13443 77777777776433 33444 5677677
Q ss_pred CeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeeccc-ccceEEEEecC-CCceeeEecCC
Q 007338 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKT-EITQYHILSWP-LKKSSQITNFP 471 (607)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~-~p~~l~~~~~~-~~~~~~Lt~~~ 471 (607)
..+.|+..... +..+ ..++.+++.++|++...+ .-..||+++++ +++.++||...
T Consensus 271 ~~~~lT~G~~~-----V~~i------~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~ 327 (353)
T PF00930_consen 271 KPRQLTSGDWE-----VTSI------LGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCED 327 (353)
T ss_dssp EEEESS-SSS------EEEE------EEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTS
T ss_pred ceeccccCcee-----eccc------ceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCC
Confidence 76777655421 1111 235677788988886522 23458889998 88899999763
No 31
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.3e-09 Score=119.22 Aligned_cols=237 Identities=17% Similarity=0.103 Sum_probs=131.2
Q ss_pred ceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeec
Q 007338 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDI 402 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~ 402 (607)
..++..+....+ ..++.++.+.+.- .. .+.|+.+++.++|.....+.....+| ++++
T Consensus 365 ~~hi~~~~~~~~-~~~~~lt~g~w~v-~~-----i~~~~~~~~~i~f~~~~~~~~~~~ly----------------~i~~ 421 (755)
T KOG2100|consen 365 YNHIAYLKLSNG-SEPRMLTSGNWEV-TS-----ILGYDKDSNRIYFDAYEEDPSERHLY----------------SISL 421 (755)
T ss_pred EEEEEEEEcCCC-CccccccccceEE-EE-----eccccCCCceEEEEecCCCCCceEEE----------------EEEc
Confidence 567777766663 2445454333321 11 14456777888887654322233444 4455
Q ss_pred CCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccc-eEEEEecCCC-ceeeEecCCCCCCc---c
Q 007338 403 NTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT-QYHILSWPLK-KSSQITNFPHPYPT---L 477 (607)
Q Consensus 403 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~-~l~~~~~~~~-~~~~Lt~~~~~~~~---~ 477 (607)
.+.....++-.... ....... .+++.....++...+-+.-|- .+=+.+.... ....|..+. ...+ .
T Consensus 422 ~~~~~~~lt~~~~~-~~~~~~~-------~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~-~~~~~~~~ 492 (755)
T KOG2100|consen 422 GSGTVESLTCSLIT-GPCTYLS-------VSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNE-ELKKTIEN 492 (755)
T ss_pred cccccccccccCCC-CcceEEE-------EecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccCh-hhHHHhhc
Confidence 44444444322211 0001111 233444456666555555552 1222221111 233443331 1111 1
Q ss_pred cCC-ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCe
Q 007338 478 ASL-QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRF 556 (607)
Q Consensus 478 ~~~-~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY 556 (607)
..+ ..+..+.+- ||...+.++++|++|+++||| |+||++|+||. +++++. .|. ..++.+++.+.|+
T Consensus 493 ~~~p~~~~~~i~~-~~~~~~~~~~lP~~~~~~~ky--Pllv~~yGGP~-----sq~v~~---~~~--~~~~~~~~s~~g~ 559 (755)
T KOG2100|consen 493 VALPIVEFGKIEI-DGITANAILILPPNFDPSKKY--PLLVVVYGGPG-----SQSVTS---KFS--VDWNEVVVSSRGF 559 (755)
T ss_pred ccCCcceeEEEEe-ccEEEEEEEecCCCCCCCCCC--CEEEEecCCCC-----cceeee---eEE--ecHHHHhhccCCe
Confidence 112 344444444 999999999999999999987 99999996532 222221 111 1234568999999
Q ss_pred EEEeCCCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 557 AVLAGPSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 557 ~Vl~~~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+|+.-..+++.|+|.. ...+++...++|++.+|+++++.+++|++++-
T Consensus 560 ~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~ 611 (755)
T KOG2100|consen 560 AVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVA 611 (755)
T ss_pred EEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeE
Confidence 9998333333334443 45667777899999999999999999999863
No 32
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.28 E-value=1.3e-09 Score=108.37 Aligned_cols=293 Identities=16% Similarity=0.152 Sum_probs=140.8
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.+||+.||. +++.+|||..+.. ......+||+++.|+|..+ ..+|+.+|+++.+.+.|...++.-
T Consensus 60 ~nly~lDL~----t~~i~QLTdg~g~-~~~g~~~s~~~~~~~Yv~~----------~~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 60 RNLYLLDLA----TGEITQLTDGPGD-NTFGGFLSPDDRALYYVKN----------GRSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp -EEEEEETT----T-EEEE---SS-B--TTT-EE-TTSSEEEEEET----------TTEEEEEETTT--EEEEEE--TTE
T ss_pred cceEEEEcc----cCEEEECccCCCC-CccceEEecCCCeEEEEEC----------CCeEEEEECCcCcEEEEEECCccc
Confidence 589999998 9999999965532 3447899999999999764 358999999999998887766531
Q ss_pred ccccccceEEe--cCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 85 LNAVFGSFVWV--NNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 85 ~~~~~~~~~Ws--pd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
.+.-.|+ .|++.++........ .+ +...+.. . ...+......+|+.+
T Consensus 125 ----~g~gt~v~n~d~t~~~g~e~~~~d-------------------~~--~l~~~~~-----f-~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 125 ----KGYGTWVANSDCTKLVGIEISRED-------------------WK--PLTKWKG-----F-REFYEARPHCRIFTI 173 (386)
T ss_dssp ----EEEEEEEE-TTSSEEEEEEEEGGG--------------------------SHHH-----H-HHHHHC---EEEEEE
T ss_pred ----ccccceeeCCCccEEEEEEEeehh-------------------cc--CccccHH-----H-HHHHhhCCCceEEEE
Confidence 3346786 346666553110000 00 0000000 0 001111235799999
Q ss_pred eC-CCCeeecCCC-CceeeeeeCC-CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccc
Q 007338 163 SL-DGTAKDFGTP-AVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNS 239 (607)
Q Consensus 163 ~~-~g~~~~lt~~-~~~~~~~~Sp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 239 (607)
++ +|+.+.|... ....-+.+|| |...|.|... .|+. ....+||.++.+++..+++......|
T Consensus 174 dl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHE-Gpw~------~Vd~RiW~i~~dg~~~~~v~~~~~~e-------- 238 (386)
T PF14583_consen 174 DLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHE-GPWD------LVDQRIWTINTDGSNVKKVHRRMEGE-------- 238 (386)
T ss_dssp ETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE--S-TT------TSS-SEEEEETTS---EESS---TTE--------
T ss_pred ECCCCceeEEEecCccccCcccCCCCCCEEEEecc-CCcc------eeceEEEEEEcCCCcceeeecCCCCc--------
Confidence 99 7888776543 3445677888 4677777643 2322 12348999999999998886421110
Q ss_pred ccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEec
Q 007338 240 VREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWY 319 (607)
Q Consensus 240 ~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~ 319 (607)
.+..--|+|||+.+ .|+....++... -+.-.+ +.++ +.+.+...+ ....+.-++||+.++.+...
T Consensus 239 ---~~gHEfw~~DG~~i-~y~~~~~~~~~~-------~i~~~d--~~t~-~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 239 ---SVGHEFWVPDGSTI-WYDSYTPGGQDF-------WIAGYD--PDTG-ERRRLMEMP-WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp ---EEEEEEE-TTSS-E-EEEEEETTT--E-------EEEEE---TTT---EEEEEEE--SEEEEEE-TTSSEEEEEE--
T ss_pred ---ccccccccCCCCEE-EEEeecCCCCce-------EEEeeC--CCCC-CceEEEeCC-ceeeeEEcCCCCEEEecCCC
Confidence 01126799999964 444433332110 111122 2333 223332222 23345557899888876421
Q ss_pred c------------ccceEEEEEcCCCCCCCceEeeeccccccc----cCCCCCCeeeCCCCCEEEEEeeecc
Q 007338 320 K------------TSQTRTWLVCPGSKDVAPRVLFDRVFENVY----SDPGSPMMTRTSTGTNVIAKIKKEN 375 (607)
Q Consensus 320 ~------------~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~dg~~~~~~~~~~~ 375 (607)
. ....-||++++.. +....|........+ .....+-++++|||+.|+|.+...|
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~--~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G 373 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEA--GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEG 373 (386)
T ss_dssp -----------------EEEEEETTT--TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTS
T ss_pred CCccccccccceecCCcEEEEecccc--CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCC
Confidence 1 1123677788876 344445332211111 0112245899999999999987654
No 33
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.01 E-value=7.5e-07 Score=89.27 Aligned_cols=245 Identities=15% Similarity=0.082 Sum_probs=130.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|++.++. +++..... ..........|+|||+.++.... ....|+++|+.+++..........
T Consensus 12 ~v~~~d~~----t~~~~~~~--~~~~~~~~l~~~~dg~~l~~~~~---------~~~~v~~~d~~~~~~~~~~~~~~~-- 74 (300)
T TIGR03866 12 TISVIDTA----TLEVTRTF--PVGQRPRGITLSKDGKLLYVCAS---------DSDTIQVIDLATGEVIGTLPSGPD-- 74 (300)
T ss_pred EEEEEECC----CCceEEEE--ECCCCCCceEECCCCCEEEEEEC---------CCCeEEEEECCCCcEEEeccCCCC--
Confidence 46677765 55544433 22224677999999998655542 235799999998876543221111
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL- 164 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 164 (607)
...+.|+|+++.++.+... ...|+++|+
T Consensus 75 ---~~~~~~~~~g~~l~~~~~~------------------------------------------------~~~l~~~d~~ 103 (300)
T TIGR03866 75 ---PELFALHPNGKILYIANED------------------------------------------------DNLVTVIDIE 103 (300)
T ss_pred ---ccEEEECCCCCEEEEEcCC------------------------------------------------CCeEEEEECC
Confidence 3467899998876654110 123444555
Q ss_pred CCC-eeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCC
Q 007338 165 DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG 243 (607)
Q Consensus 165 ~g~-~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (607)
+++ ...+........+.|+|||+.+++.... ...++.+|..+++...... ....
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~------------~~~~~~~d~~~~~~~~~~~-------------~~~~ 158 (300)
T TIGR03866 104 TRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET------------TNMAHFIDTKTYEIVDNVL-------------VDQR 158 (300)
T ss_pred CCeEEeEeeCCCCcceEEECCCCCEEEEEecC------------CCeEEEEeCCCCeEEEEEE-------------cCCC
Confidence 222 2222212223568999999998877532 1135567877664432111 0112
Q ss_pred CCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeec-------CcccceeeEcCCCcEEEEE
Q 007338 244 MRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL-------DLRFRSVSWCDDSLALVNE 316 (607)
Q Consensus 244 ~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~-------~~~~~~~~ws~Dg~~l~~~ 316 (607)
+..+.|+|||+. + ++... ....+.+++. ..+...+.+... ......+.|+|||+.++..
T Consensus 159 ~~~~~~s~dg~~-l-~~~~~----------~~~~v~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 159 PRFAEFTADGKE-L-WVSSE----------IGGTVSVIDV--ATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred ccEEEECCCCCE-E-EEEcC----------CCCEEEEEEc--CcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 345889999983 2 22111 1123444443 222111222110 1112357899999864332
Q ss_pred EeccccceEEEEEcCCCCCCCceE-ee-eccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 317 TWYKTSQTRTWLVCPGSKDVAPRV-LF-DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 317 ~~~~~~~~~l~~~dl~~~~~~~~~-l~-~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
.. ...+++++|+.+. +... +. ...+.. +.|+|+|+.|+...
T Consensus 225 ~~---~~~~i~v~d~~~~--~~~~~~~~~~~~~~---------~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 225 LG---PANRVAVVDAKTY--EVLDYLLVGQRVWQ---------LAFTPDEKYLLTTN 267 (300)
T ss_pred cC---CCCeEEEEECCCC--cEEEEEEeCCCcce---------EEECCCCCEEEEEc
Confidence 11 1236888898763 3222 21 221222 78999999877654
No 34
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.94 E-value=9.9e-07 Score=87.68 Aligned_cols=297 Identities=11% Similarity=0.065 Sum_probs=165.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|||-.- ++..-+.+..++. .++.|.+- |.+|+|++.. ++..+||-.|+++...++-|...+--.
T Consensus 207 klWis~d----~g~tFeK~vdl~~--~vS~PmIV--~~RvYFlsD~-------eG~GnlYSvdldGkDlrrHTnFtdYY~ 271 (668)
T COG4946 207 KLWISSD----GGKTFEKFVDLDG--NVSSPMIV--GERVYFLSDH-------EGVGNLYSVDLDGKDLRRHTNFTDYYP 271 (668)
T ss_pred eEEEEec----CCcceeeeeecCC--CcCCceEE--cceEEEEecc-------cCccceEEeccCCchhhhcCCchhccc
Confidence 4777752 2335566665655 58888876 8899999976 788999999999988888876654210
Q ss_pred -cccc--cceEEecCCeEEEEEecCCCCCCCCCccCCCC-CeeeecCCccccccccccccccCcccccceeeeccceEEE
Q 007338 86 -NAVF--GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLG-PKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL 161 (607)
Q Consensus 86 -~~~~--~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 161 (607)
+... ..+.|+..|.++.+- + +...+.+ +.-+ +........+...+..|.... ...++.......+++.|+
T Consensus 272 R~~nsDGkrIvFq~~GdIylyd-P-~td~lek---ldI~lpl~rk~k~~k~~~pskyledf-a~~~Gd~ia~VSRGkaFi 345 (668)
T COG4946 272 RNANSDGKRIVFQNAGDIYLYD-P-ETDSLEK---LDIGLPLDRKKKQPKFVNPSKYLEDF-AVVNGDYIALVSRGKAFI 345 (668)
T ss_pred cccCCCCcEEEEecCCcEEEeC-C-CcCccee---eecCCccccccccccccCHHHhhhhh-ccCCCcEEEEEecCcEEE
Confidence 1100 022333333333221 1 1111000 0011 000000000000001111000 001222233345778888
Q ss_pred EeC-CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 162 GSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 162 ~~~-~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
++. .|-..++.....+.--.++-|++.+++...+ ...|.++|..+++++++...
T Consensus 346 ~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~d------------gD~l~iyd~~~~e~kr~e~~------------- 400 (668)
T COG4946 346 MRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTND------------GDKLGIYDKDGGEVKRIEKD------------- 400 (668)
T ss_pred ECCCCCeeEEcCCCCceEEEEEccCCcceEEeccC------------CceEEEEecCCceEEEeeCC-------------
Confidence 888 6677788776655545666677766666543 12688999999998887541
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC-cccceeeEcCCCcEEEEEEec
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCDDSLALVNETWY 319 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~-~~~~~~~ws~Dg~~l~~~~~~ 319 (607)
-.....+.-|+|||..++ .+.+-++++++. .+| .++.+.+.. .-+..+.|+|+++.|++.-..
T Consensus 401 lg~I~av~vs~dGK~~vv-------------aNdr~el~vidi--dng-nv~~idkS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 401 LGNIEAVKVSPDGKKVVV-------------ANDRFELWVIDI--DNG-NVRLIDKSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred ccceEEEEEcCCCcEEEE-------------EcCceEEEEEEe--cCC-CeeEecccccceeEEEEEcCCceeEEEecCc
Confidence 012235888999985322 234556777775 333 455544433 346789999999987765321
Q ss_pred cccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 320 KTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 320 ~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
.--..+|.++|+++. +...++-...-+ ..+.+.|||+++||.+..
T Consensus 465 gy~tq~Iklydm~~~--Kiy~vTT~ta~D-------fsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 465 GYYTQSIKLYDMDGG--KIYDVTTPTAYD-------FSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred ceeeeeEEEEecCCC--eEEEecCCcccc-------cCcccCCCCcEEEEEecc
Confidence 112347778888883 333333111111 127889999999998754
No 35
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.93 E-value=1.1e-06 Score=92.78 Aligned_cols=129 Identities=23% Similarity=0.260 Sum_probs=77.2
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~ 113 (607)
...++||||++|||....+. .....|+++|+++|+...-. ... . ....+.|++|++.+|++.......
T Consensus 127 ~~~~~Spdg~~la~~~s~~G-----~e~~~l~v~Dl~tg~~l~d~-i~~-~---~~~~~~W~~d~~~~~y~~~~~~~~-- 194 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGG-----SEWYTLRVFDLETGKFLPDG-IEN-P---KFSSVSWSDDGKGFFYTRFDEDQR-- 194 (414)
T ss_dssp EEEEETTTSSEEEEEEEETT-----SSEEEEEEEETTTTEEEEEE-EEE-E---ESEEEEECTTSSEEEEEECSTTTS--
T ss_pred eeeeECCCCCEEEEEecCCC-----CceEEEEEEECCCCcCcCCc-ccc-c---ccceEEEeCCCCEEEEEEeCcccc--
Confidence 36789999999999987521 44588999999999653210 011 1 122499999988777653221100
Q ss_pred CCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCe--eecC---CCCc-eeeeeeCCCC
Q 007338 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTA--KDFG---TPAV-YTAVEPSPDQ 186 (607)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~--~~lt---~~~~-~~~~~~SpDg 186 (607)
+ - .. ....+||...+ ++.. ..|- .+.. ...+..|+|+
T Consensus 195 ----------------~-------~---------~~----~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~ 238 (414)
T PF02897_consen 195 ----------------T-------S---------DS----GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDG 238 (414)
T ss_dssp ----------------S-----------------CC----GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTS
T ss_pred ----------------c-------c---------cC----CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcc
Confidence 0 0 00 01346777777 4422 2332 2233 5578999999
Q ss_pred ceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 187 KYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 187 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
++|++....... .+++|++++..+
T Consensus 239 ~~l~i~~~~~~~---------~s~v~~~d~~~~ 262 (414)
T PF02897_consen 239 RYLFISSSSGTS---------ESEVYLLDLDDG 262 (414)
T ss_dssp SEEEEEEESSSS---------EEEEEEEECCCT
T ss_pred cEEEEEEEcccc---------CCeEEEEecccc
Confidence 999988754211 147899998764
No 36
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=98.93 E-value=1.4e-08 Score=104.66 Aligned_cols=146 Identities=19% Similarity=0.108 Sum_probs=108.7
Q ss_pred ccCCEEEEEeecccccceEEEEecCCCceeeEecCCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCE
Q 007338 436 LNQLKILTSKESKTEITQYHILSWPLKKSSQITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPC 515 (607)
Q Consensus 436 ~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~ 515 (607)
.++..+++..+++..|+.+|+.++.+++++.|-... ...+..+...|.+..+|.||++|+.+++. ++.+.+ +.|+
T Consensus 349 ~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik~~p-~~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~~~d---~~pT 423 (648)
T COG1505 349 KDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIREQP-VQFDADNYEVEQFFATSKDGTRIPYFIVR-KGAKKD---ENPT 423 (648)
T ss_pred CCCcEEEEEeecccCCCceEEEecCCceehhhhhcc-CCcCccCceEEEEEEEcCCCccccEEEEe-cCCcCC---CCce
Confidence 366788899999999999999999888888887663 33445556899999999999999999998 776643 4599
Q ss_pred EEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCCchhhHH--------HHhhcHHH
Q 007338 516 LFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWSNWFQVQ--------RLLLKKLF 587 (607)
Q Consensus 516 iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~--------~~~~~~~~ 587 (607)
+||.|+|+ + +.-.| .|. ....+|..+|.+-++ . +++| |++++-.|-+ ...+|-++
T Consensus 424 ll~aYGGF-~-------vsltP-~fs----~~~~~WLerGg~~v~-A--NIRG-GGEfGp~WH~Aa~k~nrq~vfdDf~A 486 (648)
T COG1505 424 LLYAYGGF-N-------ISLTP-RFS----GSRKLWLERGGVFVL-A--NIRG-GGEFGPEWHQAGMKENKQNVFDDFIA 486 (648)
T ss_pred EEEecccc-c-------cccCC-ccc----hhhHHHHhcCCeEEE-E--eccc-CCccCHHHHHHHhhhcchhhhHHHHH
Confidence 99999874 2 33334 232 123689999866555 2 2344 4445555544 45779999
Q ss_pred HHHHHHHhcccccccc
Q 007338 588 DVEWLIQAELLLEDTL 603 (607)
Q Consensus 588 ~v~~~~~~~~~~~~~~ 603 (607)
.+++||.+||.-++.|
T Consensus 487 VaedLi~rgitspe~l 502 (648)
T COG1505 487 VAEDLIKRGITSPEKL 502 (648)
T ss_pred HHHHHHHhCCCCHHHh
Confidence 9999999999766654
No 37
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.81 E-value=3.4e-07 Score=99.10 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=81.8
Q ss_pred CCCeeeeecCCC-CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec
Q 007338 18 LGPEKEVHGYPD-GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 18 ~g~~~~lt~~~~-~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
++...++.+... ...+++|++||||+.+||+......+ .++..+||+.+. +++.+++|.... ...+.|+|
T Consensus 336 ~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~--~d~~s~Lwv~~~-gg~~~~lt~g~~------~t~PsWsp 406 (591)
T PRK13616 336 GQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGA--PDPASSLWVGPL-GGVAVQVLEGHS------LTRPSWSL 406 (591)
T ss_pred CCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCC--CCcceEEEEEeC-CCcceeeecCCC------CCCceECC
Confidence 334445543322 12578999999999999998642211 145689999997 556688874432 57899999
Q ss_pred CCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC-CCeeecCCCC
Q 007338 97 NSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD-GTAKDFGTPA 175 (607)
Q Consensus 97 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~lt~~~ 175 (607)
|++.+.+..+... .. ++.. . ....++|+++++ |++++ ....
T Consensus 407 DG~~lw~v~dg~~-------------~~-----------~v~~------~-------~~~gql~~~~vd~ge~~~-~~~g 448 (591)
T PRK13616 407 DADAVWVVVDGNT-------------VV-----------RVIR------D-------PATGQLARTPVDASAVAS-RVPG 448 (591)
T ss_pred CCCceEEEecCcc-------------eE-----------EEec------c-------CCCceEEEEeccCchhhh-ccCC
Confidence 9765555422100 00 0000 0 024688888884 46554 3233
Q ss_pred ceeeeeeCCCCceEEEEE
Q 007338 176 VYTAVEPSPDQKYVLITS 193 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~ 193 (607)
.+..+.|||||++|+|..
T Consensus 449 ~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 449 PISELQLSRDGVRAAMII 466 (591)
T ss_pred CcCeEEECCCCCEEEEEE
Confidence 577899999999999986
No 38
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.76 E-value=7.1e-06 Score=84.19 Aligned_cols=92 Identities=20% Similarity=0.238 Sum_probs=53.8
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
..||..++. .++|+...+.........+...++|+++.|+.+..... ..+.-..|.++.++|+...+......+
T Consensus 13 ~gI~~~~~d--~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~----~~g~v~~~~i~~~~g~L~~~~~~~~~g 86 (345)
T PF10282_consen 13 GGIYVFRFD--EETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSG----DSGGVSSYRIDPDTGTLTLLNSVPSGG 86 (345)
T ss_dssp TEEEEEEEE--TTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSS----TTTEEEEEEEETTTTEEEEEEEEEESS
T ss_pred CcEEEEEEc--CCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEcccc----CCCCEEEEEECCCcceeEEeeeeccCC
Confidence 578888883 34666666654444546788899999988655543210 134455566666667776654322111
Q ss_pred ccccccceEEecCCeEEEEE
Q 007338 85 LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~ 104 (607)
.....+..+|+++.+|.+
T Consensus 87 --~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 87 --SSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp --SCEEEEEECTTSSEEEEE
T ss_pred --CCcEEEEEecCCCEEEEE
Confidence 012345667888888875
No 39
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.75 E-value=2.2e-05 Score=80.21 Aligned_cols=85 Identities=18% Similarity=0.104 Sum_probs=49.4
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC-CCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-~g~~~~lt~~~~~ 83 (607)
..|.+.++. .+|+.+.+..+..........+||||+.|+.... ....|.++++. .|+...+......
T Consensus 12 ~~I~~~~~~---~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~---------~~~~i~~~~~~~~g~l~~~~~~~~~ 79 (330)
T PRK11028 12 QQIHVWNLN---HEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR---------PEFRVLSYRIADDGALTFAAESPLP 79 (330)
T ss_pred CCEEEEEEC---CCCceeeeeEEecCCCCccEEECCCCCEEEEEEC---------CCCcEEEEEECCCCceEEeeeecCC
Confidence 356777774 2455554444443345778899999998755432 13556666665 4554333211111
Q ss_pred cccccccceEEecCCeEEEEE
Q 007338 84 CLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.....+.++|+++.+|.+
T Consensus 80 ---~~p~~i~~~~~g~~l~v~ 97 (330)
T PRK11028 80 ---GSPTHISTDHQGRFLFSA 97 (330)
T ss_pred ---CCceEEEECCCCCEEEEE
Confidence 114577889999887765
No 40
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.74 E-value=5.4e-05 Score=75.70 Aligned_cols=270 Identities=11% Similarity=0.033 Sum_probs=136.1
Q ss_pred ceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccc
Q 007338 61 KLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDN 140 (607)
Q Consensus 61 ~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 140 (607)
...|+++|+++++..+....... ...+.|+||++.++.+...
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~-----~~~l~~~~dg~~l~~~~~~--------------------------------- 51 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR-----PRGITLSKDGKLLYVCASD--------------------------------- 51 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC-----CCceEECCCCCEEEEEECC---------------------------------
Confidence 35899999998886554432221 4568999998866553100
Q ss_pred cccCcccccceeeeccceEEEEeC-CCCee-ecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 141 LLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
...|+++++ +++.. .+........+.|+|||+.++++... ...|++||+.+
T Consensus 52 ---------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~------------~~~l~~~d~~~ 104 (300)
T TIGR03866 52 ---------------SDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANED------------DNLVTVIDIET 104 (300)
T ss_pred ---------------CCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCC------------CCeEEEEECCC
Confidence 123455555 44332 23322223467899999988766421 13688999987
Q ss_pred CeeE-EeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeec
Q 007338 219 KLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKL 297 (607)
Q Consensus 219 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~ 297 (607)
++.. .+.. ...+..+.|+|||+. + .+...+ + ..++.++. ..+ +.......
T Consensus 105 ~~~~~~~~~--------------~~~~~~~~~~~dg~~-l-~~~~~~-~---------~~~~~~d~--~~~-~~~~~~~~ 155 (300)
T TIGR03866 105 RKVLAEIPV--------------GVEPEGMAVSPDGKI-V-VNTSET-T---------NMAHFIDT--KTY-EIVDNVLV 155 (300)
T ss_pred CeEEeEeeC--------------CCCcceEEECCCCCE-E-EEEecC-C---------CeEEEEeC--CCC-eEEEEEEc
Confidence 5432 2210 112345899999983 2 221111 1 12222232 111 11111112
Q ss_pred CcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCC-CCCCeeeCCCCCEEEEEeeeccC
Q 007338 298 DLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP-GSPMMTRTSTGTNVIAKIKKEND 376 (607)
Q Consensus 298 ~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~dg~~~~~~~~~~~~ 376 (607)
......+.|++||..++..... ...++++|+.+.+ ..+.+. ......-... ....+.++++|+.+++....
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~--- 227 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEI---GGTVSVIDVATRK-VIKKIT-FEIPGVHPEAVQPVGIKLTKDGKTAFVALGP--- 227 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCC---CCEEEEEEcCcce-eeeeee-ecccccccccCCccceEECCCCCEEEEEcCC---
Confidence 2234568899999876543211 1368888988732 122221 1100000000 00116688999876654321
Q ss_pred cCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEE
Q 007338 377 EQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHI 456 (607)
Q Consensus 377 ~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~ 456 (607)
... +..+|+++++........ ..+. ..+|+|+++.++.... .-.++.+
T Consensus 228 -~~~----------------i~v~d~~~~~~~~~~~~~-----~~~~-------~~~~~~~g~~l~~~~~---~~~~i~v 275 (300)
T TIGR03866 228 -ANR----------------VAVVDAKTYEVLDYLLVG-----QRVW-------QLAFTPDEKYLLTTNG---VSNDVSV 275 (300)
T ss_pred -CCe----------------EEEEECCCCcEEEEEEeC-----CCcc-------eEEECCCCCEEEEEcC---CCCeEEE
Confidence 111 223566666544321111 0111 1357889887754322 2236899
Q ss_pred EecCCCce
Q 007338 457 LSWPLKKS 464 (607)
Q Consensus 457 ~~~~~~~~ 464 (607)
+++.+++.
T Consensus 276 ~d~~~~~~ 283 (300)
T TIGR03866 276 IDVAALKV 283 (300)
T ss_pred EECCCCcE
Confidence 99877764
No 41
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.72 E-value=5.4e-05 Score=73.63 Aligned_cols=304 Identities=14% Similarity=0.126 Sum_probs=151.9
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
.+||.-+|.. ..|+...+.........+...|+|+++.|+.....++ .++-.-|.+|...|+...+-.....+
T Consensus 16 ~gI~v~~ld~--~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-----~ggvaay~iD~~~G~Lt~ln~~~~~g 88 (346)
T COG2706 16 QGIYVFNLDT--KTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-----EGGVAAYRIDPDDGRLTFLNRQTLPG 88 (346)
T ss_pred CceEEEEEeC--cccccchhhhccccCCCceEEECCCCCEEEEEEecCC-----cCcEEEEEEcCCCCeEEEeeccccCC
Confidence 4566666541 2444444433334446788899999998654433222 45667788888878876653221110
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
.....+..+++++++|.+.... |. ..++. ...++... ...++. .+.
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~~---------------------g~---v~v~p----~~~dG~l~---~~v~~~-~h~ 134 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYHS---------------------GS---VSVYP----LQADGSLQ---PVVQVV-KHT 134 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEccC---------------------ce---EEEEE----cccCCccc---cceeee-ecC
Confidence 0012456667888888762110 00 00010 00011000 000111 111
Q ss_pred -CC-CeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccC
Q 007338 165 -DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVRE 242 (607)
Q Consensus 165 -~g-~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~ 242 (607)
.| ..+|-+. ......+.||+++|+..... ..++++++++.|.........++ ...
T Consensus 135 g~~p~~rQ~~~--h~H~a~~tP~~~~l~v~DLG------------~Dri~~y~~~dg~L~~~~~~~v~---------~G~ 191 (346)
T COG2706 135 GSGPHERQESP--HVHSANFTPDGRYLVVPDLG------------TDRIFLYDLDDGKLTPADPAEVK---------PGA 191 (346)
T ss_pred CCCCCccccCC--ccceeeeCCCCCEEEEeecC------------CceEEEEEcccCccccccccccC---------CCC
Confidence 11 2233221 23467899999999887543 23788899887766654432221 136
Q ss_pred CCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee---------cCcccceeeEcCCCcEE
Q 007338 243 GMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK---------LDLRFRSVSWCDDSLAL 313 (607)
Q Consensus 243 ~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~---------~~~~~~~~~ws~Dg~~l 313 (607)
|+|.+.+.|+|+ ++|+..- ++ ..+.++.-++..| +.+.|.. .......+..++||+.|
T Consensus 192 GPRHi~FHpn~k--~aY~v~E--------L~--stV~v~~y~~~~g-~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFL 258 (346)
T COG2706 192 GPRHIVFHPNGK--YAYLVNE--------LN--STVDVLEYNPAVG-KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFL 258 (346)
T ss_pred CcceEEEcCCCc--EEEEEec--------cC--CEEEEEEEcCCCc-eEEEeeeeccCccccCCCCceeEEEECCCCCEE
Confidence 789999999998 4444221 11 1222222212222 3322211 11233567789999976
Q ss_pred EEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCC
Q 007338 314 VNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGN 393 (607)
Q Consensus 314 ~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~ 393 (607)
+...... ..--++.+|.++ +..+.+-....+.. .| ..+..++.|+.|++..++.. ...+|
T Consensus 259 YasNRg~-dsI~~f~V~~~~--g~L~~~~~~~teg~--~P--R~F~i~~~g~~Liaa~q~sd--~i~vf----------- 318 (346)
T COG2706 259 YASNRGH-DSIAVFSVDPDG--GKLELVGITPTEGQ--FP--RDFNINPSGRFLIAANQKSD--NITVF----------- 318 (346)
T ss_pred EEecCCC-CeEEEEEEcCCC--CEEEEEEEeccCCc--CC--ccceeCCCCCEEEEEccCCC--cEEEE-----------
Confidence 5443211 122445677666 33333211111110 01 11778899998887766532 33333
Q ss_pred cceeEeeecCCCCeeEE
Q 007338 394 IPFLDLFDINTGSKERI 410 (607)
Q Consensus 394 ~~~l~~~d~~~g~~~~l 410 (607)
+.|.++|+.+.+
T Consensus 319 -----~~d~~TG~L~~~ 330 (346)
T COG2706 319 -----ERDKETGRLTLL 330 (346)
T ss_pred -----EEcCCCceEEec
Confidence 567667766554
No 42
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.63 E-value=1.7e-06 Score=80.61 Aligned_cols=148 Identities=13% Similarity=0.299 Sum_probs=87.0
Q ss_pred cccceEEccCCCEEEEEeecC--cccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVD--EEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~--~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~ 109 (607)
......|+|+|++|++..... ......-+..+||.++..+.....+.-..++ .+..++|+|+++.++...
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~----~I~~~~WsP~g~~favi~---- 78 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEG----PIHDVAWSPNGNEFAVIY---- 78 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCC----ceEEEEECcCCCEEEEEE----
Confidence 356789999999999988742 1111123457899998887766555322222 267999999977554431
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCCceeeeeeCCCCce
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKY 188 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~~~~~~~~SpDg~~ 188 (607)
|. ....+-++++.+ ....+.. .....+.|||+|++
T Consensus 79 --------------------g~-----------------------~~~~v~lyd~~~~~i~~~~~-~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 79 --------------------GS-----------------------MPAKVTLYDVKGKKIFSFGT-QPRNTISWSPDGRF 114 (194)
T ss_pred --------------------cc-----------------------CCcccEEEcCcccEeEeecC-CCceEEEECCCCCE
Confidence 10 001222233323 2223322 23357899999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
|++..... ....|.+||+...+. +.... ......+.|||||+.
T Consensus 115 l~~~g~~n----------~~G~l~~wd~~~~~~--i~~~~------------~~~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 115 LVLAGFGN----------LNGDLEFWDVRKKKK--ISTFE------------HSDATDVEWSPDGRY 157 (194)
T ss_pred EEEEEccC----------CCcEEEEEECCCCEE--eeccc------------cCcEEEEEEcCCCCE
Confidence 99986421 134688999985432 32210 112335999999994
No 43
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.61 E-value=2.4e-06 Score=79.61 Aligned_cols=145 Identities=17% Similarity=0.247 Sum_probs=84.1
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
+||..+.. +.....+. +.....+.+.+|||+|+++|.+... ....+-++|+++.....+ ....
T Consensus 40 ~l~~~~~~----~~~~~~i~-l~~~~~I~~~~WsP~g~~favi~g~--------~~~~v~lyd~~~~~i~~~---~~~~- 102 (194)
T PF08662_consen 40 ELFYLNEK----NIPVESIE-LKKEGPIHDVAWSPNGNEFAVIYGS--------MPAKVTLYDVKGKKIFSF---GTQP- 102 (194)
T ss_pred EEEEEecC----CCccceee-ccCCCceEEEEECcCCCEEEEEEcc--------CCcccEEEcCcccEeEee---cCCC-
Confidence 45555544 34444443 4444359999999999999988632 123788888874333333 2222
Q ss_pred cccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCC
Q 007338 86 NAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLD 165 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 165 (607)
...+.|||+|++++...-. . ..+.|.++|+.
T Consensus 103 ---~n~i~wsP~G~~l~~~g~~-----------------------n-----------------------~~G~l~~wd~~ 133 (194)
T PF08662_consen 103 ---RNTISWSPDGRFLVLAGFG-----------------------N-----------------------LNGDLEFWDVR 133 (194)
T ss_pred ---ceEEEECCCCCEEEEEEcc-----------------------C-----------------------CCcEEEEEECC
Confidence 4578999999988874210 0 01344445552
Q ss_pred -CCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 166 -GTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 166 -g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
.+...-........++|||||++|+..+.. +. .. ....+.+|+..|..+..
T Consensus 134 ~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~-~r-~~-----~dng~~Iw~~~G~~l~~ 185 (194)
T PF08662_consen 134 KKKKISTFEHSDATDVEWSPDGRYLATATTS-PR-LR-----VDNGFKIWSFQGRLLYK 185 (194)
T ss_pred CCEEeeccccCcEEEEEEcCCCCEEEEEEec-cc-ee-----ccccEEEEEecCeEeEe
Confidence 221111112234689999999999987643 11 01 12356778877765443
No 44
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.5e-07 Score=91.81 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=104.2
Q ss_pred cCCEEEEEeecccccceEEEEecCCCcee----eEecCCCCCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCC
Q 007338 437 NQLKILTSKESKTEITQYHILSWPLKKSS----QITNFPHPYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGP 512 (607)
Q Consensus 437 d~~~~v~~~ss~~~p~~l~~~~~~~~~~~----~Lt~~~~~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~ 512 (607)
+...+.|..+|+-.|+.+|.+++..++.. +=+..+.++.+.....++++.++|.||.+|+-.|++-...+.. .+
T Consensus 392 ~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~Iv~kk~~k~d--g~ 469 (712)
T KOG2237|consen 392 KSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFIVYKKDIKLD--GS 469 (712)
T ss_pred CCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEEEEechhhhc--CC
Confidence 34678899999999999999999877422 1122223455544458999999999999999999986665533 34
Q ss_pred CCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCCchhhHH--------HHhhc
Q 007338 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWSNWFQVQ--------RLLLK 584 (607)
Q Consensus 513 lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~--------~~~~~ 584 (607)
.|+++|+||+. . +.-.| .|. .+.-.|..+|++... .+++.|++.+.+|-+ +-.+|
T Consensus 470 ~P~LLygYGay-~-------isl~p-~f~----~srl~lld~G~Vla~----a~VRGGGe~G~~WHk~G~lakKqN~f~D 532 (712)
T KOG2237|consen 470 KPLLLYGYGAY-G-------ISLDP-SFR----ASRLSLLDRGWVLAY----ANVRGGGEYGEQWHKDGRLAKKQNSFDD 532 (712)
T ss_pred CceEEEEeccc-c-------eeecc-ccc----cceeEEEecceEEEE----EeeccCcccccchhhccchhhhcccHHH
Confidence 49999999752 1 21222 232 223477889998886 334445555666643 34779
Q ss_pred HHHHHHHHHHhccccccccc
Q 007338 585 KLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 585 ~~~~v~~~~~~~~~~~~~~~ 604 (607)
-++++++||++|++-++.|.
T Consensus 533 fia~AeyLve~gyt~~~kL~ 552 (712)
T KOG2237|consen 533 FIACAEYLVENGYTQPSKLA 552 (712)
T ss_pred HHHHHHHHHHcCCCCcccee
Confidence 99999999999999887763
No 45
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.44 E-value=1.4e-05 Score=87.42 Aligned_cols=59 Identities=22% Similarity=0.342 Sum_probs=36.3
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
.+..+.|.|=|+|++..+.+ ..|-+|++.. +-.+.++. |..+... ..-.+.++|||||+
T Consensus 173 ~VKGvs~DP~Gky~ASqsdD-------------rtikvwrt~dw~i~k~It~-pf~~~~~------~T~f~RlSWSPDG~ 232 (942)
T KOG0973|consen 173 LVKGVSWDPIGKYFASQSDD-------------RTLKVWRTSDWGIEKSITK-PFEESPL------TTFFLRLSWSPDGH 232 (942)
T ss_pred cccceEECCccCeeeeecCC-------------ceEEEEEcccceeeEeecc-chhhCCC------cceeeecccCCCcC
Confidence 45689999999999988653 2566676543 33334433 3222211 11124599999999
No 46
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4e-05 Score=79.45 Aligned_cols=251 Identities=15% Similarity=0.189 Sum_probs=145.5
Q ss_pred CceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccC
Q 007338 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFES 80 (607)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~ 80 (607)
+-...+||.+-. .|....|..+- ...++...|+++|++||.-.. ...+.++|.+..+. +.+...
T Consensus 194 alg~~vylW~~~----s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~----------~g~v~iwD~~~~k~~~~~~~~ 258 (484)
T KOG0305|consen 194 ALGQSVYLWSAS----SGSVTELCSFG-EELVTSVKWSPDGSHLAVGTS----------DGTVQIWDVKEQKKTRTLRGS 258 (484)
T ss_pred EecceEEEEecC----CCceEEeEecC-CCceEEEEECCCCCEEEEeec----------CCeEEEEehhhccccccccCC
Confidence 345789999976 78888888654 347999999999999998764 35777889876543 333221
Q ss_pred CCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
.. ..++.++|. ..++..... . + .|.
T Consensus 259 h~----~rvg~laW~--~~~lssGsr-------------~---------~---------------------------~I~ 283 (484)
T KOG0305|consen 259 HA----SRVGSLAWN--SSVLSSGSR-------------D---------G---------------------------KIL 283 (484)
T ss_pred cC----ceeEEEecc--CceEEEecC-------------C---------C---------------------------cEE
Confidence 11 126788887 333332110 0 0 111
Q ss_pred EEeC-CC-C-eeecC-CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-eeEEeccCCCCCCCCc
Q 007338 161 LGSL-DG-T-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPV 235 (607)
Q Consensus 161 ~~~~-~g-~-~~~lt-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~ 235 (607)
..|+ .. . ...+. ....+..++|++|+++++--.++ ..+.+||.... ....+.+.
T Consensus 284 ~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnD-------------N~~~Iwd~~~~~p~~~~~~H-------- 342 (484)
T KOG0305|consen 284 NHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGND-------------NVVFIWDGLSPEPKFTFTEH-------- 342 (484)
T ss_pred EEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCc-------------cceEeccCCCccccEEEecc--------
Confidence 1111 11 0 11011 12245789999999999765432 36888888433 22223221
Q ss_pred ccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEE
Q 007338 236 CYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVN 315 (607)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~ 315 (607)
...+..++|+|--+..|+ .++|.. ...+..++. .+| +.....+...++..+.|++..+.|+.
T Consensus 343 -----~aAVKA~awcP~q~~lLA----sGGGs~------D~~i~fwn~--~~g-~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 343 -----TAAVKALAWCPWQSGLLA----TGGGSA------DRCIKFWNT--NTG-ARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred -----ceeeeEeeeCCCccCceE----EcCCCc------ccEEEEEEc--CCC-cEecccccCCceeeEEEcCCCCEEEE
Confidence 133456999998776543 333321 235666664 444 22222345678899999999887776
Q ss_pred EEeccccceEEEEEcCCCCCCCceEeeecc--ccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 316 ETWYKTSQTRTWLVCPGSKDVAPRVLFDRV--FENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 316 ~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
...+....-.||.+.--. ....+..+. +-. +.|+|||..|+..+.+
T Consensus 405 thG~s~n~i~lw~~ps~~---~~~~l~gH~~RVl~---------la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSMK---LVAELLGHTSRVLY---------LALSPDGETIVTGAAD 452 (484)
T ss_pred ecCCCCCcEEEEeccccc---eeeeecCCcceeEE---------EEECCCCCEEEEeccc
Confidence 544444455677664321 223333322 222 8899999988776654
No 47
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.41 E-value=0.00036 Score=73.84 Aligned_cols=250 Identities=17% Similarity=0.155 Sum_probs=143.5
Q ss_pred eeeeE-EEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCC
Q 007338 4 FTGIG-IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPD 82 (607)
Q Consensus 4 ~~~~~-~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~ 82 (607)
-+++. |+.|. +-+...-... ....+....|+--|.+|||-+.+ -.+|-+|+-.+..- .+ +.
T Consensus 285 ssG~f~LyelP----~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~k---------lgQLlVweWqsEsY-Vl---KQ 346 (893)
T KOG0291|consen 285 SSGEFGLYELP----DFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCSK---------LGQLLVWEWQSESY-VL---KQ 346 (893)
T ss_pred cCCeeEEEecC----CceEEEEeec-ccceeeEEEecccCCEEEEcCCc---------cceEEEEEeeccce-ee---ec
Confidence 34443 66664 3333333322 22368889999999999998753 45777777654321 11 11
Q ss_pred ccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEE
Q 007338 83 ICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLG 162 (607)
Q Consensus 83 ~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 162 (607)
.+....+..++.||||++++....+ |+ .++ +
T Consensus 347 QgH~~~i~~l~YSpDgq~iaTG~eD----------------------gK---VKv------------------------W 377 (893)
T KOG0291|consen 347 QGHSDRITSLAYSPDGQLIATGAED----------------------GK---VKV------------------------W 377 (893)
T ss_pred cccccceeeEEECCCCcEEEeccCC----------------------Cc---EEE------------------------E
Confidence 1111125688999999998874211 21 111 1
Q ss_pred eC-CC-CeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-eeEEeccCCCCCCCCcccc
Q 007338 163 SL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYN 238 (607)
Q Consensus 163 ~~-~g-~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~ 238 (607)
|. +| =...++.+ ..+..+.|+.+|+.|+-.+.+ ..+..||+.-. .-|.++.
T Consensus 378 n~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD-------------GtVRAwDlkRYrNfRTft~------------ 432 (893)
T KOG0291|consen 378 NTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD-------------GTVRAWDLKRYRNFRTFTS------------ 432 (893)
T ss_pred eccCceEEEEeccCCCceEEEEEEecCCEEEEeecC-------------CeEEeeeecccceeeeecC------------
Confidence 22 22 11222332 256788999998888777653 36778888643 3333332
Q ss_pred cccCCCCc-ceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEE
Q 007338 239 SVREGMRS-ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNET 317 (607)
Q Consensus 239 ~~~~~~~~-~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~ 317 (607)
+.+.. ...+.|-.+.|+.+...+. =.|++|.. .+|.....|..+.+.+..+.|+|+|..|++.+
T Consensus 433 ---P~p~QfscvavD~sGelV~AG~~d~----------F~IfvWS~--qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S 497 (893)
T KOG0291|consen 433 ---PEPIQFSCVAVDPSGELVCAGAQDS----------FEIFVWSV--QTGQLLDILSGHEGPVSGLSFSPDGSLLASGS 497 (893)
T ss_pred ---CCceeeeEEEEcCCCCEEEeeccce----------EEEEEEEe--ecCeeeehhcCCCCcceeeEEccccCeEEecc
Confidence 11111 2333453444555433322 25777775 56644455666778888999999999898888
Q ss_pred eccccceEEEEEcCCCCCCCceEe-eeccccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 318 WYKTSQTRTWLVCPGSKDVAPRVL-FDRVFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 318 ~~~~~~~~l~~~dl~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
|.+ .-++|-+=-.. +..+.+ ...++.. +.+.|||+.|+...-+
T Consensus 498 WDk--TVRiW~if~s~--~~vEtl~i~sdvl~---------vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 498 WDK--TVRIWDIFSSS--GTVETLEIRSDVLA---------VSFRPDGKELAVATLD 541 (893)
T ss_pred ccc--eEEEEEeeccC--ceeeeEeeccceeE---------EEEcCCCCeEEEEEec
Confidence 754 46888663222 233443 2233333 8899999999887754
No 48
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.30 E-value=0.0012 Score=64.50 Aligned_cols=195 Identities=17% Similarity=0.158 Sum_probs=107.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....|+|+|+.|++... ...|.++++.+++.......... .+..+.|+++++.++....
T Consensus 11 ~i~~~~~~~~~~~l~~~~~----------~g~i~i~~~~~~~~~~~~~~~~~----~i~~~~~~~~~~~l~~~~~----- 71 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSG----------DGTIKVWDLETGELLRTLKGHTG----PVRDVAASADGTYLASGSS----- 71 (289)
T ss_pred CEEEEEEcCCCCEEEEeec----------CcEEEEEEeeCCCcEEEEecCCc----ceeEEEECCCCCEEEEEcC-----
Confidence 5889999999999887653 35788888887754332221111 1457899998876665311
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC-CeeecCCC-CceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~lt~~-~~~~~~~~SpDg~~ 188 (607)
...+.++++ ++ ....+... .....+.|+|+++.
T Consensus 72 --------------------------------------------~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (289)
T cd00200 72 --------------------------------------------DKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI 107 (289)
T ss_pred --------------------------------------------CCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCE
Confidence 123444444 22 23333322 24567899999765
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
++.... ...+.+|++.+++....... .......+.|+|++. ++....
T Consensus 108 ~~~~~~-------------~~~i~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~--~l~~~~------ 154 (289)
T cd00200 108 LSSSSR-------------DKTIKVWDVETGKCLTTLRG------------HTDWVNSVAFSPDGT--FVASSS------ 154 (289)
T ss_pred EEEecC-------------CCeEEEEECCCcEEEEEecc------------CCCcEEEEEEcCcCC--EEEEEc------
Confidence 555431 13688899885543332110 011234588999865 222211
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
....+.+++. ..+.....+......+..+.|+|++..++.... . ..+.++|+..
T Consensus 155 -----~~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~--~~i~i~d~~~ 208 (289)
T cd00200 155 -----QDGTIKLWDL--RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--D--GTIKLWDLST 208 (289)
T ss_pred -----CCCcEEEEEc--cccccceeEecCccccceEEECCCcCEEEEecC--C--CcEEEEECCC
Confidence 0123444443 122122233333345778999999976655432 2 3567778765
No 49
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.24 E-value=0.00085 Score=65.59 Aligned_cols=242 Identities=15% Similarity=0.170 Sum_probs=129.2
Q ss_pred eeEEEeccCCCCCC-CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCc
Q 007338 6 GIGIHRLLPDDSLG-PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI 83 (607)
Q Consensus 6 ~~~~~~~~~~~~~g-~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~ 83 (607)
.+.+.++. ++ ....+.. ....+....|+|+++.|+.... ...|+++++.+++. ..+.....
T Consensus 32 ~i~i~~~~----~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~----------~~~i~i~~~~~~~~~~~~~~~~~- 94 (289)
T cd00200 32 TIKVWDLE----TGELLRTLKG--HTGPVRDVAASADGTYLASGSS----------DKTIRLWDLETGECVRTLTGHTS- 94 (289)
T ss_pred EEEEEEee----CCCcEEEEec--CCcceeEEEECCCCCEEEEEcC----------CCeEEEEEcCcccceEEEeccCC-
Confidence 46677765 33 3333332 2224668999999988877653 36888999987643 33322211
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
.+..+.|++++++++.... ...+.+++
T Consensus 95 ----~i~~~~~~~~~~~~~~~~~-------------------------------------------------~~~i~~~~ 121 (289)
T cd00200 95 ----YVSSVAFSPDGRILSSSSR-------------------------------------------------DKTIKVWD 121 (289)
T ss_pred ----cEEEEEEcCCCCEEEEecC-------------------------------------------------CCeEEEEE
Confidence 2567889988777665310 12334444
Q ss_pred C-CCC-eeecC-CCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccc
Q 007338 164 L-DGT-AKDFG-TPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSV 240 (607)
Q Consensus 164 ~-~g~-~~~lt-~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (607)
+ +++ ...+. ....+..+.|+|+++.|+.... ...+.+||+.+++....... .
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------------~~~i~i~d~~~~~~~~~~~~------------~ 176 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-------------DGTIKLWDLRTGKCVATLTG------------H 176 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-------------CCcEEEEEccccccceeEec------------C
Confidence 4 232 22222 2234678999999777665541 13688899875543322110 0
Q ss_pred cCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEecc
Q 007338 241 REGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYK 320 (607)
Q Consensus 241 ~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~ 320 (607)
......+.|+|+++. ++.. .. ...+.+++. ..+.....+......+..+.|++++..++... .
T Consensus 177 ~~~i~~~~~~~~~~~-l~~~-~~-----------~~~i~i~d~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~ 239 (289)
T cd00200 177 TGEVNSVAFSPDGEK-LLSS-SS-----------DGTIKLWDL--STGKCLGTLRGHENGVNSVAFSPDGYLLASGS--E 239 (289)
T ss_pred ccccceEEECCCcCE-EEEe-cC-----------CCcEEEEEC--CCCceecchhhcCCceEEEEEcCCCcEEEEEc--C
Confidence 112346899999863 2221 11 123444443 11111122222334567789999977665543 1
Q ss_pred ccceEEEEEcCCCCCCCceEeeec--cccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 321 TSQTRTWLVCPGSKDVAPRVLFDR--VFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 321 ~~~~~l~~~dl~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
. ..|+++++... .....+... .+.. +.|+++++.++...
T Consensus 240 ~--~~i~i~~~~~~-~~~~~~~~~~~~i~~---------~~~~~~~~~l~~~~ 280 (289)
T cd00200 240 D--GTIRVWDLRTG-ECVQTLSGHTNSVTS---------LAWSPDGKRLASGS 280 (289)
T ss_pred C--CcEEEEEcCCc-eeEEEccccCCcEEE---------EEECCCCCEEEEec
Confidence 1 35777777652 111222211 1222 77888887665543
No 50
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=0.001 Score=68.16 Aligned_cols=105 Identities=21% Similarity=0.309 Sum_probs=63.3
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+..+|||-|.+|+-...+ +-.|| ||+. .++.+..... +.-..+||..++|+..++....
T Consensus 213 etyv~wSP~GTYL~t~Hk~---------GI~lW-----GG~~f~r~~RF~Hp~----Vq~idfSP~EkYLVT~s~~p~~- 273 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQ---------GIALW-----GGESFDRIQRFYHPG----VQFIDFSPNEKYLVTYSPEPII- 273 (698)
T ss_pred eeeEEecCCceEEEEEecc---------ceeee-----cCccHHHHHhccCCC----ceeeecCCccceEEEecCCccc-
Confidence 5679999999998877653 46677 5653 3443333322 4567899998877764321100
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee-ecCC--CC--ceeeeeeCCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGT--PA--VYTAVEPSPD 185 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~--~~--~~~~~~~SpD 185 (607)
. . ..+. ...+|.+.|+ +|... .+.. .. ....+.||.|
T Consensus 274 -------------------~-----------~-~~d~------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~D 316 (698)
T KOG2314|consen 274 -------------------V-----------E-EDDN------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHD 316 (698)
T ss_pred -------------------c-----------C-cccC------CCceEEEEEccccchhcceeccCCCccccceEEeccC
Confidence 0 0 0000 1368899999 88433 2221 22 2347899999
Q ss_pred CceEEEEE
Q 007338 186 QKYVLITS 193 (607)
Q Consensus 186 g~~i~~~~ 193 (607)
+++++-..
T Consensus 317 dKy~Arm~ 324 (698)
T KOG2314|consen 317 DKYFARMT 324 (698)
T ss_pred CceeEEec
Confidence 99987654
No 51
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.22 E-value=0.0049 Score=62.89 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=28.2
Q ss_pred EEEEEeecCcccccCCCceeEEEEECCC-CceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 44 RIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 44 ~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+|+.+. ....|.++++.+ |+.+.+-..... .....+.++||+++|+..
T Consensus 2 ~~~y~~~~--------~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~ 52 (330)
T PRK11028 2 QIVYIASP--------ESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVG 52 (330)
T ss_pred eEEEEEcC--------CCCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEE
Confidence 34676653 236677778753 554333211211 114567899998877764
No 52
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.21 E-value=0.0041 Score=63.49 Aligned_cols=152 Identities=21% Similarity=0.290 Sum_probs=83.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+.+.++||||+++|-... ...++++|=.+|+..-...... .....+-.+.||||++.++....+..
T Consensus 192 FV~~VRysPDG~~Fat~gs----------Dgki~iyDGktge~vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaDkt-- 258 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGS----------DGKIYIYDGKTGEKVGELEDSD-AHKGSIFALSWSPDSTQFLTVSADKT-- 258 (603)
T ss_pred ceeeEEECCCCCeEEEecC----------CccEEEEcCCCccEEEEecCCC-CccccEEEEEECCCCceEEEecCCce--
Confidence 5788999999999776643 3588999999988653332211 12223558899999776665432111
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCccccc--ceeeeccceEEEEeCCCCeeecCC------------CCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDES--LFDYYTTAQLVLGSLDGTAKDFGT------------PAVY 177 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~~lt~------------~~~~ 177 (607)
-.++..+.. +. .+++. .....+.. +.. ....+|..++++|...-|.. ...+
T Consensus 259 ---------~KIWdVs~~-sl--v~t~~--~~~~v~dqqvG~l-Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~I 323 (603)
T KOG0318|consen 259 ---------IKIWDVSTN-SL--VSTWP--MGSTVEDQQVGCL-WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSI 323 (603)
T ss_pred ---------EEEEEeecc-ce--EEEee--cCCchhceEEEEE-EeCCeEEEEEcCcEEEEecccCCChhheecccccce
Confidence 111211110 00 00000 00000000 001 13567777777775433311 1245
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
+.+..|||+++|+-.+.+ ..|-.|+..+|...+|
T Consensus 324 TaLtv~~d~~~i~SgsyD-------------G~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 324 TALTVSPDGKTIYSGSYD-------------GHINSWDSGSGTSDRL 357 (603)
T ss_pred eEEEEcCCCCEEEeeccC-------------ceEEEEecCCcccccc
Confidence 688999999888766532 3677788877755544
No 53
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.18 E-value=0.00012 Score=71.43 Aligned_cols=50 Identities=28% Similarity=0.508 Sum_probs=36.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce--eecccCCCccccccccceEEec
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
-+....|||||++||--+. .+.|-++|+++|+. +.|..+... +..++|-|
T Consensus 159 WVlcvawsPDgk~iASG~~----------dg~I~lwdpktg~~~g~~l~gH~K~-----It~Lawep 210 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSK----------DGSIRLWDPKTGQQIGRALRGHKKW-----ITALAWEP 210 (480)
T ss_pred EEEEEEECCCcchhhcccc----------CCeEEEecCCCCCcccccccCcccc-----eeEEeecc
Confidence 4778999999999987664 36788889998875 455444332 56777765
No 54
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=0.0091 Score=58.53 Aligned_cols=134 Identities=14% Similarity=0.085 Sum_probs=75.0
Q ss_pred ccceeeEcCCCcE--EEEEEeccccceEEEEEcCCCCCCCceEee-----eccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 300 RFRSVSWCDDSLA--LVNETWYKTSQTRTWLVCPGSKDVAPRVLF-----DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 300 ~~~~~~ws~Dg~~--l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
....+.|.|+++. ++.+- ...-.+|.++... ++.+.|- ..++.. ..+...+..++||+.||++..
T Consensus 192 GPRHi~FHpn~k~aY~v~EL---~stV~v~~y~~~~--g~~~~lQ~i~tlP~dF~g---~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNEL---NSTVDVLEYNPAV--GKFEELQTIDTLPEDFTG---TNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred CcceEEEcCCCcEEEEEecc---CCEEEEEEEcCCC--ceEEEeeeeccCccccCC---CCceeEEEECCCCCEEEEecC
Confidence 4567899999984 23322 2334667777654 4455541 222222 112223677999999888764
Q ss_pred eccCcCcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccc
Q 007338 373 KENDEQIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEIT 452 (607)
Q Consensus 373 ~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~ 452 (607)
.. .... +++++..+|+.+.+..-........ ...++++++.++...+..++ -
T Consensus 264 g~--dsI~----------------~f~V~~~~g~L~~~~~~~teg~~PR---------~F~i~~~g~~Liaa~q~sd~-i 315 (346)
T COG2706 264 GH--DSIA----------------VFSVDPDGGKLELVGITPTEGQFPR---------DFNINPSGRFLIAANQKSDN-I 315 (346)
T ss_pred CC--CeEE----------------EEEEcCCCCEEEEEEEeccCCcCCc---------cceeCCCCCEEEEEccCCCc-E
Confidence 21 1222 3356766676543321110000001 13467788888887777676 5
Q ss_pred eEEEEecCCCceeeEec
Q 007338 453 QYHILSWPLKKSSQITN 469 (607)
Q Consensus 453 ~l~~~~~~~~~~~~Lt~ 469 (607)
.+|.++..+|+++.+..
T Consensus 316 ~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 316 TVFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEEcCCCceEEeccc
Confidence 58899988888877654
No 55
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.15 E-value=0.00046 Score=64.77 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=47.6
Q ss_pred CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCe
Q 007338 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
..|++++. ...+++...|+||++ |++... ...|.++|+++|+.++........ +-.+++++|.+
T Consensus 55 ~~r~~~GH--sH~v~dv~~s~dg~~-alS~sw---------D~~lrlWDl~~g~~t~~f~GH~~d----Vlsva~s~dn~ 118 (315)
T KOG0279|consen 55 PVRRLTGH--SHFVSDVVLSSDGNF-ALSASW---------DGTLRLWDLATGESTRRFVGHTKD----VLSVAFSTDNR 118 (315)
T ss_pred eeeeeecc--ceEecceEEccCCce-EEeccc---------cceEEEEEecCCcEEEEEEecCCc----eEEEEecCCCc
Confidence 45566653 236899999999986 565543 257888899999876554332221 55889999988
Q ss_pred EEEEE
Q 007338 100 LLIFT 104 (607)
Q Consensus 100 ~l~~~ 104 (607)
.++..
T Consensus 119 qivSG 123 (315)
T KOG0279|consen 119 QIVSG 123 (315)
T ss_pred eeecC
Confidence 87763
No 56
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.11 E-value=6.3e-06 Score=77.13 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=71.1
Q ss_pred CCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEE
Q 007338 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAV 558 (607)
Q Consensus 479 ~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~V 558 (607)
.+++=.++|++.+|-.|.|||++|..- +.++|+||++|+ |. |+- + .++.+-.|++.||+|
T Consensus 53 ~ve~ydvTf~g~~g~rI~gwlvlP~~~----~~~~P~vV~fhG--Y~---------g~~-g----~~~~~l~wa~~Gyav 112 (321)
T COG3458 53 RVEVYDVTFTGYGGARIKGWLVLPRHE----KGKLPAVVQFHG--YG---------GRG-G----EWHDMLHWAVAGYAV 112 (321)
T ss_pred ceEEEEEEEeccCCceEEEEEEeeccc----CCccceEEEEee--cc---------CCC-C----CccccccccccceeE
Confidence 357778999999999999999999862 246799998874 11 110 1 123345899999999
Q ss_pred EeCCCCceeccCCC-------C----------------chh-hHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 559 LAGPSIPIIGEGLW-------S----------------NWF-QVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 559 l~~~~~~~~g~g~~-------~----------------~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
|. .+. +|.|+. + .++ +-+.+..|+..+|+-|..-.-||+.|+-
T Consensus 113 f~-Mdv--RGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~ 179 (321)
T COG3458 113 FV-MDV--RGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIG 179 (321)
T ss_pred EE-Eec--ccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheE
Confidence 97 443 342221 1 111 1145577899999999999999998873
No 57
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.10 E-value=0.0073 Score=62.00 Aligned_cols=236 Identities=11% Similarity=0.072 Sum_probs=108.4
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEeccCCCCCCCCcccccc---cCCCCcceeec
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSV---REGMRSISWRA 251 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~wsp 251 (607)
....++++||+++|+++... ...+.+++++. |..........-+ ..+++.. ...+..+.++|
T Consensus 88 ~p~~i~~~~~g~~l~vany~------------~g~v~v~~l~~~g~l~~~~~~~~~~--g~g~~~~rq~~~h~H~v~~~p 153 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYG------------GGSVSVFPLDDDGSLGEVVQTVRHE--GSGPNPDRQEGPHPHQVVFSP 153 (345)
T ss_dssp CEEEEEECTTSSEEEEEETT------------TTEEEEEEECTTSEEEEEEEEEESE--EEESSTTTTSSTCEEEEEE-T
T ss_pred CcEEEEEecCCCEEEEEEcc------------CCeEEEEEccCCcccceeeeecccC--CCCCcccccccccceeEEECC
Confidence 33568999999999988543 23566777653 5444432100000 0000000 11122488999
Q ss_pred CCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCcee---ee-ecCcccceeeEcCCCcEEEEEEeccccceEEE
Q 007338 252 DKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI---LH-KLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (607)
Q Consensus 252 dg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---l~-~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~ 327 (607)
||+. +|+... + .+.+++++.+...+ +... +. ........+.|+|||+.++... .. .+.|.
T Consensus 154 dg~~--v~v~dl--G--------~D~v~~~~~~~~~~-~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~--s~~v~ 217 (345)
T PF10282_consen 154 DGRF--VYVPDL--G--------ADRVYVYDIDDDTG-KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-EL--SNTVS 217 (345)
T ss_dssp TSSE--EEEEET--T--------TTEEEEEEE-TTS--TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TT--TTEEE
T ss_pred CCCE--EEEEec--C--------CCEEEEEEEeCCCc-eEEEeeccccccCCCCcEEEEcCCcCEEEEec-CC--CCcEE
Confidence 9983 344322 2 23455544311111 1211 11 1122345688999998543322 22 23565
Q ss_pred EEcCCCCCCCceEeeecccc-ccccC-CCCCCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeeecCCC
Q 007338 328 LVCPGSKDVAPRVLFDRVFE-NVYSD-PGSPMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFDINTG 405 (607)
Q Consensus 328 ~~dl~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d~~~g 405 (607)
.+++....+..+.+...... ..+.. .....+..+|||+.||+.....+ ...+| .+|.++|
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~--sI~vf----------------~~d~~~g 279 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN--SISVF----------------DLDPATG 279 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT--EEEEE----------------EECTTTT
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC--EEEEE----------------EEecCCC
Confidence 55655222333333110000 00000 00112678999999888764311 22222 3444566
Q ss_pred CeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEec
Q 007338 406 SKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITN 469 (607)
Q Consensus 406 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~ 469 (607)
+.+.+-.-.... ..+.. ..++++++++++.....+. -.+|.++..+|.++.+..
T Consensus 280 ~l~~~~~~~~~G--~~Pr~-------~~~s~~g~~l~Va~~~s~~-v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 280 TLTLVQTVPTGG--KFPRH-------FAFSPDGRYLYVANQDSNT-VSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TEEEEEEEEESS--SSEEE-------EEE-TTSSEEEEEETTTTE-EEEEEEETTTTEEEEEEE
T ss_pred ceEEEEEEeCCC--CCccE-------EEEeCCCCEEEEEecCCCe-EEEEEEeCCCCcEEEecc
Confidence 665542111000 01122 3568899888776555444 446777777888777653
No 58
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.09 E-value=6.2e-05 Score=81.81 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=60.1
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCccc--ccCCCceeEEEEECCCCceeecccC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEED--NVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~--~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
+.+.||+-+. +++.++++. .. ..+.|+|||||+.|+|+++...-. -...+..+||++++++++.++ ..
T Consensus 377 ~~s~Lwv~~~-----gg~~~~lt~--g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~ 446 (591)
T PRK13616 377 PASSLWVGPL-----GGVAVQVLE--GH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RV 446 (591)
T ss_pred cceEEEEEeC-----CCcceeeec--CC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--cc
Confidence 3568888885 566688862 33 589999999999999986431000 001346799999999988865 22
Q ss_pred CCccccccccceEEecCCeEEEEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+. . +..+.|||||+.+++.
T Consensus 447 ~g-~----Issl~wSpDG~RiA~i 465 (591)
T PRK13616 447 PG-P----ISELQLSRDGVRAAMI 465 (591)
T ss_pred CC-C----cCeEEECCCCCEEEEE
Confidence 32 2 7899999997755554
No 59
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.09 E-value=0.00053 Score=67.84 Aligned_cols=195 Identities=19% Similarity=0.187 Sum_probs=106.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCC-e-EEEEEecCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS-T-LLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~-~-~l~~~~~~~~ 109 (607)
.++...+|+|++.||-.+- .+...|| +..+....+...... ..++...|.|.. . -++....+
T Consensus 177 Pis~~~fS~ds~~laT~sw--------sG~~kvW--~~~~~~~~~~l~gH~----~~v~~~~fhP~~~~~~lat~s~D-- 240 (459)
T KOG0272|consen 177 PISGCSFSRDSKHLATGSW--------SGLVKVW--SVPQCNLLQTLRGHT----SRVGAAVFHPVDSDLNLATASAD-- 240 (459)
T ss_pred cceeeEeecCCCeEEEeec--------CCceeEe--ecCCcceeEEEeccc----cceeeEEEccCCCccceeeeccC--
Confidence 4667899999999988764 4555666 555665544443322 237789999873 3 33332100
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCeeecCCC-CceeeeeeCCCCce
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKY 188 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~lt~~-~~~~~~~~SpDg~~ 188 (607)
| ...||.++-+....+|+.. ..+..++|.|+|++
T Consensus 241 --------------------g-------------------------tvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~ 275 (459)
T KOG0272|consen 241 --------------------G-------------------------TVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKF 275 (459)
T ss_pred --------------------C-------------------------ceeeeccCCCcchhhhhcchhhheeeeecCCCce
Confidence 1 1234433322233444432 35678999999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
|+-++.+ +.-.+||+.++..-.+-+ +-.+++.+++|-+||+ | + ..++-|.
T Consensus 276 L~TasfD-------------~tWRlWD~~tk~ElL~QE------------GHs~~v~~iaf~~DGS--L--~-~tGGlD~ 325 (459)
T KOG0272|consen 276 LGTASFD-------------STWRLWDLETKSELLLQE------------GHSKGVFSIAFQPDGS--L--A-ATGGLDS 325 (459)
T ss_pred eeecccc-------------cchhhcccccchhhHhhc------------ccccccceeEecCCCc--e--e-eccCccc
Confidence 9877542 234568888763222111 1124566799999998 2 1 1222221
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEE
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~ 329 (607)
.. . +||. -+|...-.|..+-..+..+.|||+|..++.... ++..++|-+
T Consensus 326 ~~------R--vWDl--Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~--Dnt~kVWDL 374 (459)
T KOG0272|consen 326 LG------R--VWDL--RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS--DNTCKVWDL 374 (459)
T ss_pred hh------h--eeec--ccCcEEEEecccccceeeEeECCCceEEeecCC--CCcEEEeee
Confidence 11 1 1111 111011111122335667999999988776542 345677744
No 60
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.05 E-value=0.0042 Score=62.85 Aligned_cols=90 Identities=16% Similarity=-0.031 Sum_probs=50.3
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCc--ccccCCCceeEEEEECCCCcee-ecccCC
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDE--EDNVSSCKLRVWIADAETGEAK-PLFESP 81 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~--~~~~~~~~~~L~v~d~~~g~~~-~lt~~~ 81 (607)
..+++.|.. +++... .++.+...+. .+||||+.|+.....-+ .-| +....|-++|+++++.. .+- .+
T Consensus 27 ~~v~ViD~~----~~~v~g--~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G--~~~d~V~v~D~~t~~~~~~i~-~p 96 (352)
T TIGR02658 27 TQVYTIDGE----AGRVLG--MTDGGFLPNP-VVASDGSFFAHASTVYSRIARG--KRTDYVEVIDPQTHLPIADIE-LP 96 (352)
T ss_pred ceEEEEECC----CCEEEE--EEEccCCCce-eECCCCCEEEEEeccccccccC--CCCCEEEEEECccCcEEeEEc-cC
Confidence 456677765 333322 2334434444 59999999866654100 001 23467999999998864 332 11
Q ss_pred Ccc---ccccccceEEecCCeEEEEE
Q 007338 82 DIC---LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 82 ~~~---~~~~~~~~~Wspd~~~l~~~ 104 (607)
... .......+..||||+.+|+.
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFY 122 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEe
Confidence 110 00112378899999987764
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.05 E-value=0.0023 Score=59.62 Aligned_cols=225 Identities=13% Similarity=0.215 Sum_probs=116.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~~~~~~~~ 110 (607)
.+....|.-||.+||-.+. ++...+|-++. . +.++.....+..+.+..+.|.|. ..+++.+..
T Consensus 22 ~v~Sv~wn~~g~~lasgs~--------dktv~v~n~e~--~--r~~~~~~~~gh~~svdql~w~~~~~d~~atas~---- 85 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSF--------DKTVSVWNLER--D--RFRKELVYRGHTDSVDQLCWDPKHPDLFATASG---- 85 (313)
T ss_pred cceEEEEcccCceeeeccc--------CCceEEEEecc--h--hhhhhhcccCCCcchhhheeCCCCCcceEEecC----
Confidence 5889999999999988764 34455554443 3 22322222222223568899976 456555321
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCee-ecCCCCceeeeeeCCCCce
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAK-DFGTPAVYTAVEPSPDQKY 188 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~-~lt~~~~~~~~~~SpDg~~ 188 (607)
++ .+-+++. .++.. ++.....-..+.|||||++
T Consensus 86 -------------------dk--------------------------~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~ 120 (313)
T KOG1407|consen 86 -------------------DK--------------------------TIRIWDIRSGKCTARIETKGENINITWSPDGEY 120 (313)
T ss_pred -------------------Cc--------------------------eEEEEEeccCcEEEEeeccCcceEEEEcCCCCE
Confidence 01 1222333 44322 2222222246899999999
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDA 268 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~ 268 (607)
+++...+ ..|-.+|....++..-.+.+ .....+.|.-++. ++|+. .+.|..
T Consensus 121 ~~~~~kd-------------D~it~id~r~~~~~~~~~~~-------------~e~ne~~w~~~nd--~Fflt-~GlG~v 171 (313)
T KOG1407|consen 121 IAVGNKD-------------DRITFIDARTYKIVNEEQFK-------------FEVNEISWNNSND--LFFLT-NGLGCV 171 (313)
T ss_pred EEEecCc-------------ccEEEEEecccceeehhccc-------------ceeeeeeecCCCC--EEEEe-cCCceE
Confidence 9998542 14556666554333211110 1122477775554 44442 222211
Q ss_pred ccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEee--eccc
Q 007338 269 NVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF--DRVF 346 (607)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~--~~~~ 346 (607)
.|+-+.. +. ....+..+...--.+.|+|+|++|+.... +....|| |++.- .=.|.+. ++.+
T Consensus 172 --------~ILsyps--Lk--pv~si~AH~snCicI~f~p~GryfA~GsA--DAlvSLW--D~~EL-iC~R~isRldwpV 234 (313)
T KOG1407|consen 172 --------EILSYPS--LK--PVQSIKAHPSNCICIEFDPDGRYFATGSA--DALVSLW--DVDEL-ICERCISRLDWPV 234 (313)
T ss_pred --------EEEeccc--cc--cccccccCCcceEEEEECCCCceEeeccc--cceeecc--ChhHh-hhheeeccccCce
Confidence 1222111 10 11223334444557889999999876542 2234566 44321 0134443 4445
Q ss_pred cccccCCCCCCeeeCCCCCEEEEEee
Q 007338 347 ENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 347 ~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.. ++++-||++|+-.++
T Consensus 235 RT---------lSFS~dg~~lASaSE 251 (313)
T KOG1407|consen 235 RT---------LSFSHDGRMLASASE 251 (313)
T ss_pred EE---------EEeccCcceeeccCc
Confidence 54 889999998776554
No 62
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.01 E-value=9.2e-06 Score=81.59 Aligned_cols=102 Identities=22% Similarity=0.262 Sum_probs=67.6
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
.....|+|++.+|..|.|||++|.+-+ .++|+||.+|+. ++. ...+.....||++||+||
T Consensus 54 ~~vy~v~f~s~~g~~V~g~l~~P~~~~----~~~Pavv~~hGy------------g~~----~~~~~~~~~~a~~G~~vl 113 (320)
T PF05448_consen 54 VEVYDVSFESFDGSRVYGWLYRPKNAK----GKLPAVVQFHGY------------GGR----SGDPFDLLPWAAAGYAVL 113 (320)
T ss_dssp EEEEEEEEEEGGGEEEEEEEEEES-SS----SSEEEEEEE--T------------T------GGGHHHHHHHHHTT-EEE
T ss_pred EEEEEEEEEccCCCEEEEEEEecCCCC----CCcCEEEEecCC------------CCC----CCCcccccccccCCeEEE
Confidence 467789999999999999999998522 356999988742 111 001122346899999999
Q ss_pred eCCCCceeccC-----------CC------------CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 560 AGPSIPIIGEG-----------LW------------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 560 ~~~~~~~~g~g-----------~~------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
. .++ +|.| .. ..+-+-+.+..|+++||+.|.++.-+|+++|.
T Consensus 114 ~-~d~--rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~ 178 (320)
T PF05448_consen 114 A-MDV--RGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIG 178 (320)
T ss_dssp E-E----TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred E-ecC--CCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEE
Confidence 6 222 2211 10 12334467889999999999999999999874
No 63
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.00 E-value=0.00086 Score=67.14 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=78.0
Q ss_pred CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCC
Q 007338 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSR 109 (607)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~ 109 (607)
...+....|+|+|...+|.+.+ +.-+|.||+.+.+..++...-.. -...+..|.-|+++.+|++.
T Consensus 257 ~fPi~~a~f~p~G~~~i~~s~r---------rky~ysyDle~ak~~k~~~~~g~-e~~~~e~FeVShd~~fia~~----- 321 (514)
T KOG2055|consen 257 KFPIQKAEFAPNGHSVIFTSGR---------RKYLYSYDLETAKVTKLKPPYGV-EEKSMERFEVSHDSNFIAIA----- 321 (514)
T ss_pred cCccceeeecCCCceEEEeccc---------ceEEEEeeccccccccccCCCCc-ccchhheeEecCCCCeEEEc-----
Confidence 3357889999999977777654 57899999999988777422110 01124578888998866653
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCc
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQK 187 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~ 187 (607)
|+ .++|.++.. +++ ...+.-++.+..+.||.||+
T Consensus 322 --------------------G~------------------------~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk 357 (514)
T KOG2055|consen 322 --------------------GN------------------------NGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK 357 (514)
T ss_pred --------------------cc------------------------CceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence 21 234555554 333 22233345678899999998
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.|+.... ..+||+||+....
T Consensus 358 ~l~~~~~-------------~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 358 ELLASGG-------------TGEVYVWNLRQNS 377 (514)
T ss_pred EEEEEcC-------------CceEEEEecCCcc
Confidence 8887743 1379999997653
No 64
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.99 E-value=0.00014 Score=70.53 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=50.5
Q ss_pred eecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 24 VHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 24 lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
|.+.++...+...+|.+||..++-.+- +...|.++|+++|.-.+|-....++ ++.+.||||+.++|-
T Consensus 189 vl~~pgh~pVtsmqwn~dgt~l~tAS~---------gsssi~iWdpdtg~~~pL~~~glgg----~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 189 VLQDPGHNPVTSMQWNEDGTILVTASF---------GSSSIMIWDPDTGQKIPLIPKGLGG----FSLLKWSPDGDVLFA 255 (445)
T ss_pred heeCCCCceeeEEEEcCCCCEEeeccc---------CcceEEEEcCCCCCcccccccCCCc----eeeEEEcCCCCEEEE
Confidence 444555557889999999998876653 4578999999999877775222222 668899999998887
Q ss_pred E
Q 007338 104 T 104 (607)
Q Consensus 104 ~ 104 (607)
+
T Consensus 256 A 256 (445)
T KOG2139|consen 256 A 256 (445)
T ss_pred e
Confidence 5
No 65
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.96 E-value=0.00056 Score=67.48 Aligned_cols=230 Identities=17% Similarity=0.245 Sum_probs=116.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+....||||.++|+--.. ...++++|+.+|+.+.+.... ....+.++.|-||+..++...++
T Consensus 271 ~V~yi~wSPDdryLlaCg~----------~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs~d---- 333 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGF----------DEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGSPD---- 333 (519)
T ss_pred ceEEEEECCCCCeEEecCc----------hHheeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecCCC----
Confidence 5889999999998754322 234999999999987665332 11235689999998765553322
Q ss_pred CCCCccCCCCCeeeecCCcccc-------ccccccccccCcccccc-eeeeccceEEEEeCCC-Cee-ecCCCCceeeee
Q 007338 112 PPKKTMVPLGPKIQSNEQKNII-------ISRMTDNLLKDEYDESL-FDYYTTAQLVLGSLDG-TAK-DFGTPAVYTAVE 181 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g-~~~-~lt~~~~~~~~~ 181 (607)
+.++...-+|+.. .++++. +.-.+|+.. .......++..++... .-+ .++....+++++
T Consensus 334 ---------r~i~~wdlDgn~~~~W~gvr~~~v~d--lait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~ 402 (519)
T KOG0293|consen 334 ---------RTIIMWDLDGNILGNWEGVRDPKVHD--LAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFS 402 (519)
T ss_pred ---------CcEEEecCCcchhhcccccccceeEE--EEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEE
Confidence 1122222222210 011111 111122221 1111234555555522 222 234444677999
Q ss_pred eCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEE
Q 007338 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (607)
Q Consensus 182 ~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (607)
+|.||+++++... ..++.+||++.. +.+.. ++|... |. .++.-+
T Consensus 403 iS~d~k~~LvnL~-------------~qei~LWDl~e~--~lv~k--------------Y~Ghkq------~~-fiIrSC 446 (519)
T KOG0293|consen 403 ISKDGKLALVNLQ-------------DQEIHLWDLEEN--KLVRK--------------YFGHKQ------GH-FIIRSC 446 (519)
T ss_pred EcCCCcEEEEEcc-------------cCeeEEeecchh--hHHHH--------------hhcccc------cc-eEEEec
Confidence 9999999888743 247889998732 11111 111110 00 011111
Q ss_pred eecCCCCccc-cCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCc-EEEEEEeccccceEEEEE
Q 007338 262 AQDRGDANVE-VSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSL-ALVNETWYKTSQTRTWLV 329 (607)
Q Consensus 262 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~-~l~~~~~~~~~~~~l~~~ 329 (607)
+-+..+.-+. ....+++|+|.. ..|.....|..+...+..++|+|-.. .+++. .+++.-+||-.
T Consensus 447 Fgg~~~~fiaSGSED~kvyIWhr--~sgkll~~LsGHs~~vNcVswNP~~p~m~ASa--sDDgtIRIWg~ 512 (519)
T KOG0293|consen 447 FGGGNDKFIASGSEDSKVYIWHR--ISGKLLAVLSGHSKTVNCVSWNPADPEMFASA--SDDGTIRIWGP 512 (519)
T ss_pred cCCCCcceEEecCCCceEEEEEc--cCCceeEeecCCcceeeEEecCCCCHHHhhcc--CCCCeEEEecC
Confidence 1111111111 123356777774 44433345555556677889998765 34443 33455677744
No 66
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.95 E-value=0.00013 Score=69.80 Aligned_cols=131 Identities=24% Similarity=0.324 Sum_probs=83.8
Q ss_pred ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 007338 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~ 114 (607)
--++||+|++||..++ ..|.+.|..+=+..+|...-+ .+.-+.|+.|+-.++.....
T Consensus 13 ~c~fSp~g~yiAs~~~-----------yrlviRd~~tlq~~qlf~cld-----ki~yieW~ads~~ilC~~yk------- 69 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-----------YRLVIRDSETLQLHQLFLCLD-----KIVYIEWKADSCHILCVAYK------- 69 (447)
T ss_pred ceeECCCCCeeeeeee-----------eEEEEeccchhhHHHHHHHHH-----Hhhheeeeccceeeeeeeec-------
Confidence 4589999999998863 588999998888777753322 15678999887655543110
Q ss_pred CccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-Cee-ecCC-CCceeeeeeCCCCceEEE
Q 007338 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAK-DFGT-PAVYTAVEPSPDQKYVLI 191 (607)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~-~lt~-~~~~~~~~~SpDg~~i~~ 191 (607)
...+.+.++.. +.. .+.. .+....++|||||+.|+.
T Consensus 70 -----------------------------------------~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ 108 (447)
T KOG4497|consen 70 -----------------------------------------DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILL 108 (447)
T ss_pred -----------------------------------------cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEee
Confidence 11222233311 111 1211 234568999999999998
Q ss_pred EEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 192 TSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
++. |..+|-+|.+.+.+..-|.. ...+...+++.|||+
T Consensus 109 tse------------F~lriTVWSL~t~~~~~~~~-------------pK~~~kg~~f~~dg~ 146 (447)
T KOG4497|consen 109 TSE------------FDLRITVWSLNTQKGYLLPH-------------PKTNVKGYAFHPDGQ 146 (447)
T ss_pred eec------------ceeEEEEEEeccceeEEecc-------------cccCceeEEECCCCc
Confidence 863 23477888888876665543 123445688899998
No 67
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.94 E-value=0.006 Score=62.90 Aligned_cols=249 Identities=13% Similarity=0.074 Sum_probs=111.0
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc---cccccceEEecCCeEEEEEe
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL---NAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~---~~~~~~~~Wspd~~~l~~~~ 105 (607)
-+....+..+||||++|+.... ...++.++|.++.++.+......... ...+..+.-++.+..+++..
T Consensus 76 ~G~~~~~i~~s~DG~~~~v~n~---------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l 146 (369)
T PF02239_consen 76 VGGNPRGIAVSPDGKYVYVANY---------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL 146 (369)
T ss_dssp -SSEEEEEEE--TTTEEEEEEE---------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE
T ss_pred cCCCcceEEEcCCCCEEEEEec---------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE
Confidence 3446788999999999865543 24689999999988754322111000 00011222233333222210
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC---eeecCCCCceeeee
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT---AKDFGTPAVYTAVE 181 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~---~~~lt~~~~~~~~~ 181 (607)
....++|++|. +.+ .+.+.......+..
T Consensus 147 ------------------------------------------------kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 147 ------------------------------------------------KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp ------------------------------------------------TTTTEEEEEETTTSSCEEEEEEE--TTEEEEE
T ss_pred ------------------------------------------------ccCCeEEEEEeccccccceeeecccccccccc
Confidence 02467888887 332 22333344567899
Q ss_pred eCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCccccccc-CCC-CcceeecCCCceEEE
Q 007338 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVR-EGM-RSISWRADKPSTLYW 259 (607)
Q Consensus 182 ~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~-~~~~wspdg~~~l~~ 259 (607)
|+|||++++...... ..+.++|+++++...+........ +. .... .-. ..+.|...+....+
T Consensus 179 ~dpdgry~~va~~~s------------n~i~viD~~~~k~v~~i~~g~~p~-~~--~~~~~php~~g~vw~~~~~~~~~- 242 (369)
T PF02239_consen 179 FDPDGRYFLVAANGS------------NKIAVIDTKTGKLVALIDTGKKPH-PG--PGANFPHPGFGPVWATSGLGYFA- 242 (369)
T ss_dssp E-TTSSEEEEEEGGG------------TEEEEEETTTTEEEEEEE-SSSBE-ET--TEEEEEETTTEEEEEEEBSSSSE-
T ss_pred cCcccceeeeccccc------------ceeEEEeeccceEEEEeecccccc-cc--ccccccCCCcceEEeecccccee-
Confidence 999999998876532 367888988776655433110000 00 0000 001 12456555432111
Q ss_pred EEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCce
Q 007338 260 VEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPR 339 (607)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~ 339 (607)
+...+.... .+++. .+....+.+.. .+.-..+.-+||++.+..+.........|.++|..+.+ ...
T Consensus 243 ~~~ig~~~v----------~v~d~--~~wkvv~~I~~-~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~~ 308 (369)
T PF02239_consen 243 IPLIGTDPV----------SVHDD--YAWKVVKTIPT-QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VVK 308 (369)
T ss_dssp EEEEE--TT----------T-STT--TBTSEEEEEE--SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EEE
T ss_pred cccccCCcc----------ccchh--hcCeEEEEEEC-CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcc-eeE
Confidence 111111100 00110 01101122222 22224567799999876663222235689999988731 111
Q ss_pred Eee-ec--cccccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 340 VLF-DR--VFENVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 340 ~l~-~~--~~~~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
.+. .. .+-. +.|++||+.++++...
T Consensus 309 ~i~~~~~~~~~h---------~ef~~dG~~v~vS~~~ 336 (369)
T PF02239_consen 309 TITPGPGKRVVH---------MEFNPDGKEVWVSVWD 336 (369)
T ss_dssp -HHHHHT--EEE---------EEE-TTSSEEEEEEE-
T ss_pred EEeccCCCcEec---------cEECCCCCEEEEEEec
Confidence 221 11 1223 8899999999998765
No 68
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.00024 Score=70.93 Aligned_cols=157 Identities=14% Similarity=0.126 Sum_probs=96.0
Q ss_pred eEEEeccCCCCCCCeeeeecCCC--CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPD--GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~--~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
+|..||. +++..+|..+-. .+.......||||+.||+... ...|+++...+++. ++..+
T Consensus 282 ~ysyDle----~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~----------~G~I~lLhakT~el--i~s~K--- 342 (514)
T KOG2055|consen 282 LYSYDLE----TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN----------NGHIHLLHAKTKEL--ITSFK--- 342 (514)
T ss_pred EEEeecc----ccccccccCCCCcccchhheeEecCCCCeEEEccc----------CceEEeehhhhhhh--hheee---
Confidence 5677775 666666653222 225788899999998888643 47899998888874 33222
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
++..++.+.|+.|++.|+... ..+++|++|+
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~-------------------------------------------------~~GeV~v~nl 373 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASG-------------------------------------------------GTGEVYVWNL 373 (514)
T ss_pred eccEEeeEEEecCCcEEEEEc-------------------------------------------------CCceEEEEec
Confidence 233478999998887666531 1246777777
Q ss_pred CC--CeeecCCCCc--eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC----CCeeEEeccCCCCCCCCcc
Q 007338 165 DG--TAKDFGTPAV--YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD----GKLVRELCDLPPAEDIPVC 236 (607)
Q Consensus 165 ~g--~~~~lt~~~~--~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~----~~~~~~l~~~~~~~~~~~~ 236 (607)
.. -..++...+. -..++.|++|++++.-+.. .-+-+||.+ ++..+++..
T Consensus 374 ~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~-------------GiVNIYd~~s~~~s~~PkPik~---------- 430 (514)
T KOG2055|consen 374 RQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS-------------GIVNIYDGNSCFASTNPKPIKT---------- 430 (514)
T ss_pred CCcceEEEEeecCccceeeeeecCCCceEEeccCc-------------ceEEEeccchhhccCCCCchhh----------
Confidence 32 2344444332 2488999999988876532 123344432 344444432
Q ss_pred cccccCCCCcceeecCCC
Q 007338 237 YNSVREGMRSISWRADKP 254 (607)
Q Consensus 237 ~~~~~~~~~~~~wspdg~ 254 (607)
++.....+.++++++|++
T Consensus 431 ~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 431 VDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred hhhhheeeeeeeeCcchh
Confidence 111224455789999987
No 69
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.93 E-value=0.0027 Score=58.81 Aligned_cols=134 Identities=13% Similarity=0.202 Sum_probs=81.6
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCC-CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
.++=|+|+. ++...++..+..- ..+....|--||++++-.+. ++...|| |+..-..+++..+..
T Consensus 61 qhvRlyD~~----S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgse--------Dgt~kIW--dlR~~~~qR~~~~~s- 125 (311)
T KOG0315|consen 61 QHVRLYDLN----SNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSE--------DGTVKIW--DLRSLSCQRNYQHNS- 125 (311)
T ss_pred CeeEEEEcc----CCCCCceeEEeccCCceEEEEEeecCeEEEecCC--------CceEEEE--eccCcccchhccCCC-
Confidence 456677776 5555455544332 36888999999998754432 4544454 776655555544332
Q ss_pred cccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEe
Q 007338 84 CLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGS 163 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 163 (607)
.+..+...|++.-||... ..++|++.|
T Consensus 126 ----pVn~vvlhpnQteLis~d-------------------------------------------------qsg~irvWD 152 (311)
T KOG0315|consen 126 ----PVNTVVLHPNQTELISGD-------------------------------------------------QSGNIRVWD 152 (311)
T ss_pred ----CcceEEecCCcceEEeec-------------------------------------------------CCCcEEEEE
Confidence 245566667755555420 134666777
Q ss_pred C-CC-CeeecCCC--CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 164 L-DG-TAKDFGTP--AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 164 ~-~g-~~~~lt~~--~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
+ +. =..+|.++ ..+.++.+.|||++++...+. .+.|+|++-++
T Consensus 153 l~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-------------G~cyvW~l~~~ 199 (311)
T KOG0315|consen 153 LGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-------------GNCYVWRLLNH 199 (311)
T ss_pred ccCCccccccCCCCCcceeeEEEcCCCcEEEEecCC-------------ccEEEEEccCC
Confidence 7 33 23344333 256789999999999877542 37899987653
No 70
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.83 E-value=0.0026 Score=63.93 Aligned_cols=233 Identities=15% Similarity=0.142 Sum_probs=128.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|+-+|.+|+-... ...+.+||..+|+..|.....+.. --.+.|-.+..+.....
T Consensus 278 PI~slKWnk~G~yilS~~v----------D~ttilwd~~~g~~~q~f~~~s~~----~lDVdW~~~~~F~ts~t------ 337 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGV----------DGTTILWDAHTGTVKQQFEFHSAP----ALDVDWQSNDEFATSST------ 337 (524)
T ss_pred ceEEEEEcCCCCEEEeccC----------CccEEEEeccCceEEEeeeeccCC----ccceEEecCceEeecCC------
Confidence 5888999999999876542 346777899999887765544421 13578876666544321
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC--CCCeeecC-CCCceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DGTAKDFG-TPAVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g~~~~lt-~~~~~~~~~~SpDg~~ 188 (607)
.+.|+++-+ +.....+. ....+..+.|.|-|+-
T Consensus 338 --------------------------------------------d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~L 373 (524)
T KOG0273|consen 338 --------------------------------------------DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSL 373 (524)
T ss_pred --------------------------------------------CceEEEEEecCCCcceeeecccCceEEEEECCCCce
Confidence 122333333 23333332 2345678999999887
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
|+-.+.+ ..|-+|+... .....|.. -......+.|||+|+.. + ....+.
T Consensus 374 LaS~SdD-------------~TlkiWs~~~~~~~~~l~~-------------Hskei~t~~wsp~g~v~--~--n~~~~~ 423 (524)
T KOG0273|consen 374 LASCSDD-------------GTLKIWSMGQSNSVHDLQA-------------HSKEIYTIKWSPTGPVT--S--NPNMNL 423 (524)
T ss_pred EEEecCC-------------CeeEeeecCCCcchhhhhh-------------hccceeeEeecCCCCcc--C--CCcCCc
Confidence 7766532 3566776432 22111110 00122358899998731 0 000011
Q ss_pred CccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeecccc
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFE 347 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~ 347 (607)
....+.....+.++++ ..|-....++++...+..++|||+|+++++.+- ++ .+.+.+..+.+ -.+...+.
T Consensus 424 ~l~sas~dstV~lwdv--~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~--dg--~V~iws~~~~~-l~~s~~~~--- 493 (524)
T KOG0273|consen 424 MLASASFDSTVKLWDV--ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL--DG--CVHIWSTKTGK-LVKSYQGT--- 493 (524)
T ss_pred eEEEeecCCeEEEEEc--cCCceeEeeccCCCceEEEEecCCCcEEEecCC--CC--eeEeccccchh-eeEeecCC---
Confidence 1111223344556665 333233455566677889999999999887642 12 34444554421 12222111
Q ss_pred ccccCCCCCCeeeCCCCCEEEEEeee
Q 007338 348 NVYSDPGSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~~~~~~~~ 373 (607)
.+.+.+.|+.+|.+|.....+
T Consensus 494 -----~~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 494 -----GGIFELCWNAAGDKLGACASD 514 (524)
T ss_pred -----CeEEEEEEcCCCCEEEEEecC
Confidence 111348999999988776643
No 71
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.80 E-value=0.017 Score=59.13 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=42.5
Q ss_pred cceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeee---ecCcccceeeEcCCCcEEEEEEecccc
Q 007338 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILH---KLDLRFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 246 ~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~---~~~~~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
.+++||||+. |+..- ...++++.| +.+|++.-.|. .+.+.+..+.||||++.|+..+.. .
T Consensus 195 ~VRysPDG~~---Fat~g----------sDgki~iyD--Gktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD--k 257 (603)
T KOG0318|consen 195 CVRYSPDGSR---FATAG----------SDGKIYIYD--GKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD--K 257 (603)
T ss_pred eEEECCCCCe---EEEec----------CCccEEEEc--CCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC--c
Confidence 5789999883 33221 223566655 36664555555 234567789999999988876543 2
Q ss_pred ceEEEEEc
Q 007338 323 QTRTWLVC 330 (607)
Q Consensus 323 ~~~l~~~d 330 (607)
.-+||-+.
T Consensus 258 t~KIWdVs 265 (603)
T KOG0318|consen 258 TIKIWDVS 265 (603)
T ss_pred eEEEEEee
Confidence 35777554
No 72
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.79 E-value=5.1e-05 Score=50.17 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=26.7
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEE
Q 007338 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWI 66 (607)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v 66 (607)
++++.. ......|.|||||++|+|++++.. .+..+||+
T Consensus 2 ~~~t~~--~~~~~~p~~SpDGk~i~f~s~~~~-----~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNS--PGDDGSPAWSPDGKYIYFTSNRND-----RGSFDIYV 39 (39)
T ss_dssp EEES-S--SSSEEEEEE-TTSSEEEEEEECT-------SSEEEEE
T ss_pred cCcccC--CccccCEEEecCCCEEEEEecCCC-----CCCcCEEC
Confidence 466633 336899999999999999998721 26788885
No 73
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.76 E-value=0.063 Score=54.43 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=67.3
Q ss_pred CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEec-CCCCCCCCCccCC
Q 007338 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRDPPKKTMVP 119 (607)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~-~~~~~~~~~~~~~ 119 (607)
|+++ +|+.+.... ...+.++++|.++++.......... ... ..|||++.++.... -.|..
T Consensus 11 ~~~~-v~V~d~~~~----~~~~~v~ViD~~~~~v~g~i~~G~~-----P~~-~~spDg~~lyva~~~~~R~~-------- 71 (352)
T TIGR02658 11 DARR-VYVLDPGHF----AATTQVYTIDGEAGRVLGMTDGGFL-----PNP-VVASDGSFFAHASTVYSRIA-------- 71 (352)
T ss_pred CCCE-EEEECCccc----ccCceEEEEECCCCEEEEEEEccCC-----Cce-eECCCCCEEEEEeccccccc--------
Confidence 5555 677653100 1138999999999886543322221 223 48899887776521 11100
Q ss_pred CCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCC--------CceeeeeeCCCCceE
Q 007338 120 LGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP--------AVYTAVEPSPDQKYV 189 (607)
Q Consensus 120 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~--------~~~~~~~~SpDg~~i 189 (607)
+++ ....|-++|+ +.+ ..+|.-+ ..-..+.+||||++|
T Consensus 72 --------------------------~G~------~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l 119 (352)
T TIGR02658 72 --------------------------RGK------RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTL 119 (352)
T ss_pred --------------------------cCC------CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEE
Confidence 000 1234556666 443 3233211 122378999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
++.... | ...+-++|+.++++-.
T Consensus 120 ~V~n~~-p----------~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 120 LFYQFS-P----------SPAVGVVDLEGKAFVR 142 (352)
T ss_pred EEecCC-C----------CCEEEEEECCCCcEEE
Confidence 987432 2 2368899998775443
No 74
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.72 E-value=0.00099 Score=65.79 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=39.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCC-c-eeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG-E-AKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g-~-~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.+-..+||++|++||-.+. +...-||....++. + ...+..+.. .+.-+.||||.+.++.
T Consensus 226 EVWfl~FS~nGkyLAsaSk--------D~Taiiw~v~~d~~~kl~~tlvgh~~-----~V~yi~wSPDdryLla 286 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASK--------DSTAIIWIVVYDVHFKLKKTLVGHSQ-----PVSYIMWSPDDRYLLA 286 (519)
T ss_pred cEEEEEEcCCCeeEeeccC--------CceEEEEEEecCcceeeeeeeecccC-----ceEEEEECCCCCeEEe
Confidence 4777899999999998764 34556777666544 1 123322222 2678899999887665
No 75
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.051 Score=52.30 Aligned_cols=230 Identities=15% Similarity=0.150 Sum_probs=121.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~~~~~~~~ 110 (607)
.+....+|+||..++..+. ...|.++|...|+.......+.-+ +.-..|... ..++..+. .+
T Consensus 16 ~i~sl~fs~~G~~litss~----------dDsl~LYd~~~g~~~~ti~skkyG----~~~~~Fth~~~~~i~sSt-k~-- 78 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSE----------DDSLRLYDSLSGKQVKTINSKKYG----VDLACFTHHSNTVIHSST-KE-- 78 (311)
T ss_pred ceeEEEecCCCCEEEEecC----------CCeEEEEEcCCCceeeEeeccccc----ccEEEEecCCceEEEccC-CC--
Confidence 6899999999999888543 247888899998876555444322 334555533 44444321 00
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCceeeeeeCCCCc
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYTAVEPSPDQK 187 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~~~~~SpDg~ 187 (607)
...|-.+++ +.+ ++-+.. ...+..++.||-+.
T Consensus 79 ---------------------------------------------d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d 113 (311)
T KOG1446|consen 79 ---------------------------------------------DDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD 113 (311)
T ss_pred ---------------------------------------------CCceEEEEeecCceEEEcCCCCceEEEEEecCCCC
Confidence 011222333 222 222222 23567899999876
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
.++-.+.+ ..|++||+...+..-+..+.. ..-.++.|.| |+|+...+..
T Consensus 114 ~FlS~S~D-------------~tvrLWDlR~~~cqg~l~~~~--------------~pi~AfDp~G---LifA~~~~~~- 162 (311)
T KOG1446|consen 114 TFLSSSLD-------------KTVRLWDLRVKKCQGLLNLSG--------------RPIAAFDPEG---LIFALANGSE- 162 (311)
T ss_pred eEEecccC-------------CeEEeeEecCCCCceEEecCC--------------CcceeECCCC---cEEEEecCCC-
Confidence 66655432 378999998766555543211 1126777777 4455443222
Q ss_pred CccccCCCceEEeccCCCCCCCCce--eeee-cCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeec
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPE--ILHK-LDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDR 344 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~--~l~~-~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~ 344 (607)
.|.+.|..-++.+.-. .+.. ...+...+.|||||+.++..+. ...++++|.=. |....-+..
T Consensus 163 ---------~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~--G~~~~tfs~ 227 (311)
T KOG1446|consen 163 ---------LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFD--GTVKSTFSG 227 (311)
T ss_pred ---------eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccC--CcEeeeEee
Confidence 2222222112111111 1221 2235678999999997655442 23577787655 332222211
Q ss_pred cccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 345 VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.... ...++ ...++|||+.|+-.+.
T Consensus 228 ~~~~-~~~~~--~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 228 YPNA-GNLPL--SATFTPDSKFVLSGSD 252 (311)
T ss_pred ccCC-CCcce--eEEECCCCcEEEEecC
Confidence 0000 00111 2678999997766553
No 76
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.72 E-value=0.0091 Score=58.07 Aligned_cols=197 Identities=16% Similarity=0.141 Sum_probs=103.4
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEe-cCCeEEEEEecCCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV-NNSTLLIFTIPSSRRDP 112 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws-pd~~~l~~~~~~~~~~~ 112 (607)
..|.|.+..+.|+|+-. ....|+.+++++++.+.+. .+. ...+... +++++++...
T Consensus 3 Egp~~d~~~g~l~~~D~---------~~~~i~~~~~~~~~~~~~~-~~~------~~G~~~~~~~g~l~v~~~------- 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDI---------PGGRIYRVDPDTGEVEVID-LPG------PNGMAFDRPDGRLYVADS------- 59 (246)
T ss_dssp EEEEEETTTTEEEEEET---------TTTEEEEEETTTTEEEEEE-SSS------EEEEEEECTTSEEEEEET-------
T ss_pred cceEEECCCCEEEEEEc---------CCCEEEEEECCCCeEEEEe-cCC------CceEEEEccCCEEEEEEc-------
Confidence 36899997778888743 3579999999998776543 122 2345555 6777766531
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecC----CC-C--ceeeeeeCC
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFG----TP-A--VYTAVEPSP 184 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt----~~-~--~~~~~~~Sp 184 (607)
..+.++++ +|+.+.+. .. . ...++.++|
T Consensus 60 --------------------------------------------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~ 95 (246)
T PF08450_consen 60 --------------------------------------------GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP 95 (246)
T ss_dssp --------------------------------------------TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred --------------------------------------------CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence 01111233 33322221 11 1 345889999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeec
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQD 264 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~ 264 (607)
||+ |+++.......... ....||.++.+ ++++.+... -..+..+.||||++ .||+...
T Consensus 96 ~G~-ly~t~~~~~~~~~~----~~g~v~~~~~~-~~~~~~~~~-------------~~~pNGi~~s~dg~-~lyv~ds-- 153 (246)
T PF08450_consen 96 DGN-LYVTDSGGGGASGI----DPGSVYRIDPD-GKVTVVADG-------------LGFPNGIAFSPDGK-TLYVADS-- 153 (246)
T ss_dssp TS--EEEEEECCBCTTCG----GSEEEEEEETT-SEEEEEEEE-------------ESSEEEEEEETTSS-EEEEEET--
T ss_pred CCC-EEEEecCCCccccc----cccceEEECCC-CeEEEEecC-------------cccccceEECCcch-heeeccc--
Confidence 998 77775432111100 01469999998 666665430 01123599999998 3443321
Q ss_pred CCCCccccCCCceEEeccCCCCCCCCc---eeeeecC---cccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 265 RGDANVEVSPRDIIYTQPAEPAEGEKP---EILHKLD---LRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~l~~~~---~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
....++.++. ...+.+. +.+.... .....+++..+|..++... ...+|++++.++
T Consensus 154 ---------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~----~~~~I~~~~p~G 214 (246)
T PF08450_consen 154 ---------FNGRIWRFDL-DADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW----GGGRIVVFDPDG 214 (246)
T ss_dssp ---------TTTEEEEEEE-ETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE----TTTEEEEEETTS
T ss_pred ---------ccceeEEEec-cccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc----CCCEEEEECCCc
Confidence 1223444332 0111111 1121211 1245677878887655542 234899999886
No 77
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0051 Score=65.65 Aligned_cols=114 Identities=20% Similarity=0.254 Sum_probs=69.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc--e-eecccCCCccccccccceEEecCCeEEEEEecCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--A-KPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSS 108 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~ 108 (607)
.+....+||||+.++.... + ..+.++++.+++ . +.+..+ ...+..+.|+||+++++....+
T Consensus 161 sv~~~~fs~~g~~l~~~~~--------~--~~i~~~~~~~~~~~~~~~l~~h-----~~~v~~~~fs~d~~~l~s~s~D- 224 (456)
T KOG0266|consen 161 SVTCVDFSPDGRALAAASS--------D--GLIRIWKLEGIKSNLLRELSGH-----TRGVSDVAFSPDGSYLLSGSDD- 224 (456)
T ss_pred ceEEEEEcCCCCeEEEccC--------C--CcEEEeecccccchhhcccccc-----ccceeeeEECCCCcEEEEecCC-
Confidence 5777899999999888764 2 344555555555 2 222211 1236799999999876654211
Q ss_pred CCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC--CC-CeeecC-CCCceeeeeeCC
Q 007338 109 RRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DG-TAKDFG-TPAVYTAVEPSP 184 (607)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g-~~~~lt-~~~~~~~~~~Sp 184 (607)
..|.++++ .+ ..+.|. ....+..+.|+|
T Consensus 225 ------------------------------------------------~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 225 ------------------------------------------------KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred ------------------------------------------------ceEEEeeccCCCeEEEEecCCCCceEEEEecC
Confidence 12333333 22 233443 234667999999
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
+|+.|+..+. ...+.+||+++++..
T Consensus 257 ~g~~i~Sgs~-------------D~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 257 DGNLLVSGSD-------------DGTVRIWDVRTGECV 281 (456)
T ss_pred CCCEEEEecC-------------CCcEEEEeccCCeEE
Confidence 9966655543 237899999886433
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.69 E-value=0.0047 Score=57.66 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=38.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
...+..|||||+++++... ...|-.+|..+-++..-- + .+.+...+.|..++.++|.+
T Consensus 108 eni~i~wsp~g~~~~~~~k----------dD~it~id~r~~~~~~~~--~---~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 108 ENINITWSPDGEYIAVGNK----------DDRITFIDARTYKIVNEE--Q---FKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred cceEEEEcCCCCEEEEecC----------cccEEEEEecccceeehh--c---ccceeeeeeecCCCCEEEEe
Confidence 5678999999999999753 356777788765543221 1 11124578899778887765
No 79
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.66 E-value=0.0016 Score=69.47 Aligned_cols=212 Identities=17% Similarity=0.238 Sum_probs=124.2
Q ss_pred EeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccc
Q 007338 10 HRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVF 89 (607)
Q Consensus 10 ~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~ 89 (607)
.++-|+.++++.+.+.+..+ .+...+||||.+.|+-.+. +....||-++..+. ..+.... +..+
T Consensus 433 ~~~~D~~~~~~~~~L~GH~G--PVyg~sFsPd~rfLlScSE--------D~svRLWsl~t~s~--~V~y~GH----~~PV 496 (707)
T KOG0263|consen 433 VDMLDDDSSGTSRTLYGHSG--PVYGCSFSPDRRFLLSCSE--------DSSVRLWSLDTWSC--LVIYKGH----LAPV 496 (707)
T ss_pred hhhccccCCceeEEeecCCC--ceeeeeecccccceeeccC--------Ccceeeeeccccee--EEEecCC----Ccce
Confidence 46667888999999986543 5899999999998766543 56677776665432 2222111 1123
Q ss_pred cceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCee
Q 007338 90 GSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK 169 (607)
Q Consensus 90 ~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 169 (607)
-..+|+|-|-+++....+ ...+||..+-....+
T Consensus 497 wdV~F~P~GyYFatas~D-----------------------------------------------~tArLWs~d~~~PlR 529 (707)
T KOG0263|consen 497 WDVQFAPRGYYFATASHD-----------------------------------------------QTARLWSTDHNKPLR 529 (707)
T ss_pred eeEEecCCceEEEecCCC-----------------------------------------------ceeeeeecccCCchh
Confidence 456777766554442110 123455444322222
Q ss_pred ecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCC-CCcc
Q 007338 170 DFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREG-MRSI 247 (607)
Q Consensus 170 ~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~ 247 (607)
-+... ..+.-+.|.|++.|++--+. ...+.+||+.+|...++.. + ..+ +..+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSs-------------D~tVRlWDv~~G~~VRiF~------------G-H~~~V~al 583 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSS-------------DRTVRLWDVSTGNSVRIFT------------G-HKGPVTAL 583 (707)
T ss_pred hhcccccccceEEECCcccccccCCC-------------CceEEEEEcCCCcEEEEec------------C-CCCceEEE
Confidence 22111 23344789999999875533 2368899998776666542 1 122 2359
Q ss_pred eeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEE
Q 007338 248 SWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (607)
Q Consensus 248 ~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~ 327 (607)
.+||+|+ |+..- .....+.+||. ..|.....+..+...+..+.||.||..|+.... +..-+||
T Consensus 584 ~~Sp~Gr----~LaSg---------~ed~~I~iWDl--~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~--DnsV~lW 646 (707)
T KOG0263|consen 584 AFSPCGR----YLASG---------DEDGLIKIWDL--ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGA--DNSVRLW 646 (707)
T ss_pred EEcCCCc----eEeec---------ccCCcEEEEEc--CCCcchhhhhcccCceeEEEEecCCCEEEecCC--CCeEEEE
Confidence 9999998 33221 12245677774 333233344455566788999999998777542 2334666
No 80
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=97.66 E-value=2.4e-05 Score=74.37 Aligned_cols=59 Identities=17% Similarity=0.032 Sum_probs=44.4
Q ss_pred chhHHHhccCeEEEeCCCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 546 TSSLIFLARRFAVLAGPSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 546 ~~~q~la~~GY~Vl~~~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+..|+||++||+|+.++.+++.|+|.. ...+++...++|++++|++|++++.+|.+++.
T Consensus 5 ~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~ 67 (213)
T PF00326_consen 5 WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIG 67 (213)
T ss_dssp HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEE
Confidence 457999999999999333223334433 45567778899999999999999999999863
No 81
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.63 E-value=0.014 Score=60.09 Aligned_cols=105 Identities=14% Similarity=0.160 Sum_probs=60.6
Q ss_pred CEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCC
Q 007338 43 KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGP 122 (607)
Q Consensus 43 ~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~ 122 (607)
+-|+|+..+ +...|.++|.++.+...-...... ......++||++++|....
T Consensus 5 ~~l~~V~~~--------~~~~v~viD~~t~~~~~~i~~~~~----~h~~~~~s~Dgr~~yv~~r---------------- 56 (369)
T PF02239_consen 5 GNLFYVVER--------GSGSVAVIDGATNKVVARIPTGGA----PHAGLKFSPDGRYLYVANR---------------- 56 (369)
T ss_dssp GGEEEEEEG--------GGTEEEEEETTT-SEEEEEE-STT----EEEEEE-TT-SSEEEEEET----------------
T ss_pred ccEEEEEec--------CCCEEEEEECCCCeEEEEEcCCCC----ceeEEEecCCCCEEEEEcC----------------
Confidence 345666654 457999999999876433221111 1234678899998777421
Q ss_pred eeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCceEEEEEccCCCcc
Q 007338 123 KIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSY 200 (607)
Q Consensus 123 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~ 200 (607)
.+.|-++|+ +++ ..++..+.....+++||||++|+.+...
T Consensus 57 ---------------------------------dg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~----- 98 (369)
T PF02239_consen 57 ---------------------------------DGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYE----- 98 (369)
T ss_dssp ---------------------------------TSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEE-----
T ss_pred ---------------------------------CCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecC-----
Confidence 124556777 553 4445444445689999999999877543
Q ss_pred ccCCCcCCccEEEEeCCCCe
Q 007338 201 KVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 201 ~~~~~~~~~~l~~~d~~~~~ 220 (607)
+..+.++|.++.+
T Consensus 99 -------~~~v~v~D~~tle 111 (369)
T PF02239_consen 99 -------PGTVSVIDAETLE 111 (369)
T ss_dssp -------TTEEEEEETTT--
T ss_pred -------CCceeEecccccc
Confidence 3478889987754
No 82
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.58 E-value=0.0033 Score=69.44 Aligned_cols=249 Identities=17% Similarity=0.191 Sum_probs=127.0
Q ss_pred eeEEEeccCCCCCCCeeee-ecCCCCCcccceEEccCCCEEEE-EeecCcccccCCCceeEEEEECCCCce--eecccCC
Q 007338 6 GIGIHRLLPDDSLGPEKEV-HGYPDGAKINFVSWSPDGKRIAF-SVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESP 81 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~l-t~~~~~~~~~~~~~SPDG~~laf-~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~ 81 (607)
+|.+-|.. ++.++.| +. ....+..|.|||||++||| ++-+.- .++..||+.++.+... ..|- .+
T Consensus 330 ~L~~~D~d----G~n~~~ve~~--~~~~i~sP~~SPDG~~vAY~ts~e~~-----~g~s~vYv~~L~t~~~~~vkl~-ve 397 (912)
T TIGR02171 330 NLAYIDYT----KGASRAVEIE--DTISVYHPDISPDGKKVAFCTGIEGL-----PGKSSVYVRNLNASGSGLVKLP-VE 397 (912)
T ss_pred eEEEEecC----CCCceEEEec--CCCceecCcCCCCCCEEEEEEeecCC-----CCCceEEEEehhccCCCceEee-cc
Confidence 68888875 7788877 43 3446889999999999999 543210 2578899999986433 3331 11
Q ss_pred CccccccccceEEe--cC-CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccce
Q 007338 82 DICLNAVFGSFVWV--NN-STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQ 158 (607)
Q Consensus 82 ~~~~~~~~~~~~Ws--pd-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (607)
. ..=++|- .+ ...|++.++.+.. .|+.-| ....
T Consensus 398 ~------aaiprwrv~e~gdt~ivyv~~a~nn-----------------------------------~d~~~~---~~~s 433 (912)
T TIGR02171 398 N------AAIPRWRVLENGDTVIVYVSDASNN-----------------------------------KDDATF---AAYS 433 (912)
T ss_pred c------ccccceEecCCCCeEEEEEcCCCCC-----------------------------------cchhhh---hhcc
Confidence 1 2235664 55 4555554332110 001111 1234
Q ss_pred EEEEeC-CC---CeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCC
Q 007338 159 LVLGSL-DG---TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (607)
Q Consensus 159 l~~~~~-~g---~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (607)
-|.+.. +| +++.|-.+.+...+ |.| +.++++..+.- ...+.--++..++-..
T Consensus 434 tw~v~f~~gkfg~p~kl~dga~hggv--s~~-~~lavtga~ll----------r~~~~~~~~~~~~~~v----------- 489 (912)
T TIGR02171 434 TWQVPFANGKFGTPKKLFDGAYHGGV--SED-LNLAVSGARLL----------RAHVANEDVDNGKDDV----------- 489 (912)
T ss_pred eEEEEecCCCCCCchhhhcccccccc--ccC-CceeeehhhHh----------hhhhcccccccCccce-----------
Confidence 566666 44 68888766544333 333 45665543210 0000000111121111
Q ss_pred cccccccCCCCcceeecCCCceEEEEEeecCCCCc-cccCC--CceEEeccCCCCCCCCceeeeec-CcccceeeEcCC-
Q 007338 235 VCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN-VEVSP--RDIIYTQPAEPAEGEKPEILHKL-DLRFRSVSWCDD- 309 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~g~~~~~l~~~-~~~~~~~~ws~D- 309 (607)
+|++ .+.=+.+.+.||.+.-.|+.+-+..+.. +-... +.++++.| .+|...+.+... ++.+....|-.+
T Consensus 490 -wyn~--eqacn~sl~~d~~~rt~fldfgg~tg~~fvg~~y~~he~~lvad---s~gklv~~v~ap~gytfdh~ew~~~~ 563 (912)
T TIGR02171 490 -WYNG--EQACNASLAKDGSKRTLFLDFGGSTGQAFVGQKYGVHERLLVAD---SKGKLVRAVAAPAGYTFDHTEWVTGR 563 (912)
T ss_pred -eecc--hhccchhhhccCCcceEEEecCCccchhhccccccceeEEEEec---CCCchhhhccCCCCccccchhhhcCC
Confidence 1110 1112367778888776676554322211 11222 23344444 344222333222 234445557543
Q ss_pred -CcEEEEEEeccccceEEEEEcCCCCCCCceEee
Q 007338 310 -SLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF 342 (607)
Q Consensus 310 -g~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~ 342 (607)
+.+++.-.+.+..+.+|.+++++. ++...|.
T Consensus 564 ~~~~vatl~n~~g~h~ki~lv~~~~--~~i~~l~ 595 (912)
T TIGR02171 564 SNLAVATLTNVNGAHKKIALINLSD--SKVTELV 595 (912)
T ss_pred CceEEEEeecCCCccceEEEEEcCC--CceEEee
Confidence 345666666666678999999988 4556654
No 83
>PTZ00421 coronin; Provisional
Probab=97.57 E-value=0.037 Score=59.32 Aligned_cols=112 Identities=13% Similarity=0.066 Sum_probs=67.3
Q ss_pred cccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCce--------eecccCCCccccccccceEEecCC-eEE
Q 007338 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--------KPLFESPDICLNAVFGSFVWVNNS-TLL 101 (607)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--------~~lt~~~~~~~~~~~~~~~Wspd~-~~l 101 (607)
.+....|+| |++.||..+. + ..|.+||+.++.. ..+..+. ..+..+.|+|++ .++
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~--------D--gtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~~~~iL 141 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASE--------D--GTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPSAMNVL 141 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeC--------C--CEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcCCCCEE
Confidence 588999999 8887766543 2 4677778765421 2222111 125678999874 565
Q ss_pred EEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCC-CCcee
Q 007338 102 IFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGT-PAVYT 178 (607)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~-~~~~~ 178 (607)
+.... ...|.++|+ +++ ...+.. ...+.
T Consensus 142 aSgs~-------------------------------------------------DgtVrIWDl~tg~~~~~l~~h~~~V~ 172 (493)
T PTZ00421 142 ASAGA-------------------------------------------------DMVVNVWDVERGKAVEVIKCHSDQIT 172 (493)
T ss_pred EEEeC-------------------------------------------------CCEEEEEECCCCeEEEEEcCCCCceE
Confidence 55310 123344455 343 223332 23567
Q ss_pred eeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 179 AVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 179 ~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.++|+|||+.|+..+.+ ..|.+||+.+++
T Consensus 173 sla~spdG~lLatgs~D-------------g~IrIwD~rsg~ 201 (493)
T PTZ00421 173 SLEWNLDGSLLCTTSKD-------------KKLNIIDPRDGT 201 (493)
T ss_pred EEEEECCCCEEEEecCC-------------CEEEEEECCCCc
Confidence 89999999988766432 368899987663
No 84
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.56 E-value=0.072 Score=56.25 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=34.8
Q ss_pred ceEEEEeC-CCCeee--cCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 157 AQLVLGSL-DGTAKD--FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 157 ~~l~~~~~-~g~~~~--lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
..|+++|+ +|+... +.. .....+.|++||+.++|+......... ....+..||++.+.+.
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~--~~~~~~~v~~~~~gt~ 212 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTS--DSGYPRQVYRHKLGTP 212 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS---CCGCCEEEEEEETTS-
T ss_pred EEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccc--cCCCCcEEEEEECCCC
Confidence 57888999 674322 111 112249999999999999865421100 0112457787777654
No 85
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=97.55 E-value=0.00016 Score=72.22 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=65.2
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCC----C---cCCCCCCchhHHHhc
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP----N---EFSGMTPTSSLIFLA 553 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p----~---~~~~~~~~~~q~la~ 553 (607)
..|.+.|...++..++++|+.|.+. +.|.|+||+.|+. |.+-..+.|.+ . .+..+....-..||.
T Consensus 87 ~~EKv~f~~~p~~~vpaylLvPd~~----~~p~PAVL~lHgH----g~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk 158 (390)
T PF12715_consen 87 TREKVEFNTTPGSRVPAYLLVPDGA----KGPFPAVLCLHGH----GGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAK 158 (390)
T ss_dssp EEEEEEE--STTB-EEEEEEEETT------S-EEEEEEE--T----T--HHHHCT---SSGCG--STTSTTT-HHHHHHT
T ss_pred EEEEEEEEccCCeeEEEEEEecCCC----CCCCCEEEEeCCC----CCCcccccCCcccccccchhhccccccHHHHHHh
Confidence 7889999999999999999999875 3477999998853 22221122211 1 111111222358999
Q ss_pred cCeEEEeCCCCceecc-CC-C-------------------CchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 554 RRFAVLAGPSIPIIGE-GL-W-------------------SNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 554 ~GY~Vl~~~~~~~~g~-g~-~-------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+||+|+. ++..-.|+ |. + .++.|+.-+.-|.|.+++||-.+.-||.+++
T Consensus 159 ~GYVvla-~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RI 228 (390)
T PF12715_consen 159 RGYVVLA-PDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRI 228 (390)
T ss_dssp TTSEEEE-E--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEE
T ss_pred CCCEEEE-EccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccce
Confidence 9999997 44433331 00 0 2333444445678999999999999999986
No 86
>PRK10115 protease 2; Provisional
Probab=97.54 E-value=0.088 Score=59.06 Aligned_cols=55 Identities=11% Similarity=0.026 Sum_probs=37.5
Q ss_pred cceEEEEeC-CCC--eeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 156 TAQLVLGSL-DGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 156 ~~~l~~~~~-~g~--~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
..+|+++++ +|+ +..+.... ..+.|++|++.|+|+.+.+. . . .+.++|++++.++
T Consensus 152 ~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~-~-~-----~~~~v~~h~lgt~ 209 (686)
T PRK10115 152 QYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPV-T-L-----LPYQVWRHTIGTP 209 (686)
T ss_pred EEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCC-C-C-----CCCEEEEEECCCC
Confidence 358888998 675 34443222 35899999999999987421 0 0 1358999998876
No 87
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=97.49 E-value=8.1e-05 Score=73.72 Aligned_cols=99 Identities=25% Similarity=0.365 Sum_probs=54.5
Q ss_pred CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC-chhHHHhccCeEEEeCCCCceecc
Q 007338 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLAGPSIPIIGE 569 (607)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~-~~~q~la~~GY~Vl~~~~~~~~g~ 569 (607)
||.+|.+.||+| +.+.++ |+|+||..+| |.-.. +.. .......... .....|+.+||+|+. .+. +|.
T Consensus 1 DGv~L~adv~~P-~~~~~~--~~P~il~~tp--Y~~~~---~~~-~~~~~~~~~~~~~~~~~~~~GY~vV~-~D~--RG~ 68 (272)
T PF02129_consen 1 DGVRLAADVYRP-GADGGG--PFPVILTRTP--YGKGD---QTA-SDLAGANPGPPSARRPFAERGYAVVV-QDV--RGT 68 (272)
T ss_dssp TS-EEEEEEEEE---TTSS--SEEEEEEEES--STCTC----HH-HHHHTTCHHSHGGGHHHHHTT-EEEE-EE---TTS
T ss_pred CCCEEEEEEEec-CCCCCC--cccEEEEccC--cCCCC---Ccc-cchhhhhcccchhHHHHHhCCCEEEE-ECC--ccc
Confidence 899999999999 545444 5699998754 11000 000 0000000000 001249999999997 332 332
Q ss_pred CC-CCchhh-HHHHhhcHHHHHHHHHHhcccccc
Q 007338 570 GL-WSNWFQ-VQRLLLKKLFDVEWLIQAELLLED 601 (607)
Q Consensus 570 g~-~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~ 601 (607)
|. ++.... ..+...|..++|+||..+.+-++.
T Consensus 69 g~S~G~~~~~~~~e~~D~~d~I~W~~~Qpws~G~ 102 (272)
T PF02129_consen 69 GGSEGEFDPMSPNEAQDGYDTIEWIAAQPWSNGK 102 (272)
T ss_dssp TTS-S-B-TTSHHHHHHHHHHHHHHHHCTTEEEE
T ss_pred ccCCCccccCChhHHHHHHHHHHHHHhCCCCCCe
Confidence 22 222222 577899999999999999886654
No 88
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=97.48 E-value=0.00033 Score=73.52 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=63.3
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..|.++++..||.+|+|+|++|.. + + |.|+||..|+. ++... .......+.|+++||+|+.
T Consensus 167 ~~e~v~i~~~~g~~l~g~l~~P~~-~--~--~~P~Vli~gG~------------~~~~~--~~~~~~~~~La~~Gy~vl~ 227 (414)
T PRK05077 167 ELKELEFPIPGGGPITGFLHLPKG-D--G--PFPTVLVCGGL------------DSLQT--DYYRLFRDYLAPRGIAMLT 227 (414)
T ss_pred ceEEEEEEcCCCcEEEEEEEECCC-C--C--CccEEEEeCCc------------ccchh--hhHHHHHHHHHhCCCEEEE
Confidence 678999999899999999999973 2 3 34888864421 11110 0011235689999999998
Q ss_pred CCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 561 GPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
++.|..|. ...............+.+++|.+...||.+++
T Consensus 228 -~D~pG~G~--s~~~~~~~d~~~~~~avld~l~~~~~vd~~ri 267 (414)
T PRK05077 228 -IDMPSVGF--SSKWKLTQDSSLLHQAVLNALPNVPWVDHTRV 267 (414)
T ss_pred -ECCCCCCC--CCCCCccccHHHHHHHHHHHHHhCcccCcccE
Confidence 77765443 21111111111222577899999988888765
No 89
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.47 E-value=0.061 Score=50.12 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=49.9
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
.+++. .+++ ++....++||++.||... ...|-++|+.++++.++...+. .++.+..+.|--||+.
T Consensus 33 ~rTiq-h~ds-qVNrLeiTpdk~~LAaa~-----------~qhvRlyD~~S~np~Pv~t~e~--h~kNVtaVgF~~dgrW 97 (311)
T KOG0315|consen 33 SRTIQ-HPDS-QVNRLEITPDKKDLAAAG-----------NQHVRLYDLNSNNPNPVATFEG--HTKNVTAVGFQCDGRW 97 (311)
T ss_pred EEEEe-cCcc-ceeeEEEcCCcchhhhcc-----------CCeeEEEEccCCCCCceeEEec--cCCceEEEEEeecCeE
Confidence 34443 5655 799999999999998754 4688999999998866643322 2233667788888998
Q ss_pred EEEE
Q 007338 101 LIFT 104 (607)
Q Consensus 101 l~~~ 104 (607)
.+..
T Consensus 98 MyTg 101 (311)
T KOG0315|consen 98 MYTG 101 (311)
T ss_pred EEec
Confidence 8864
No 90
>PRK13604 luxD acyl transferase; Provisional
Probab=97.46 E-value=0.00028 Score=69.51 Aligned_cols=96 Identities=14% Similarity=0.009 Sum_probs=59.2
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
+......+.||.+|.||+..|.+-+. + |.|+||..|+- ++...+ +.....+|+++||+|+.
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~~~-~--~~~~vIi~HGf------------~~~~~~---~~~~A~~La~~G~~vLr- 69 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKENSP-K--KNNTILIASGF------------ARRMDH---FAGLAEYLSSNGFHVIR- 69 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCcccCC-C--CCCEEEEeCCC------------CCChHH---HHHHHHHHHHCCCEEEE-
Confidence 33445677899999999999985332 3 33888877742 222111 11235799999999998
Q ss_pred CCCce-ec-cCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 562 PSIPI-IG-EGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 562 ~~~~~-~g-~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
.+... .| +++...+.-......|+.++|+||-+++
T Consensus 70 fD~rg~~GeS~G~~~~~t~s~g~~Dl~aaid~lk~~~ 106 (307)
T PRK13604 70 YDSLHHVGLSSGTIDEFTMSIGKNSLLTVVDWLNTRG 106 (307)
T ss_pred ecCCCCCCCCCCccccCcccccHHHHHHHHHHHHhcC
Confidence 65422 23 2222111111223789999999998875
No 91
>PTZ00420 coronin; Provisional
Probab=97.46 E-value=0.1 Score=56.53 Aligned_cols=33 Identities=3% Similarity=-0.011 Sum_probs=24.6
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
..+..++|+|||+.|+....+ ..|.+||+.+++
T Consensus 168 ~~V~SlswspdG~lLat~s~D-------------~~IrIwD~Rsg~ 200 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVG-------------KHMHIIDPRKQE 200 (568)
T ss_pred CcEEEEEECCCCCEEEEEecC-------------CEEEEEECCCCc
Confidence 456789999999988765421 368899998764
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.41 E-value=0.0022 Score=70.86 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=44.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+.+..||||+.++|-.+. .+.+.+++..+.+...++...... +.++.|.|-|+++...
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~----------DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASq 189 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSL----------DNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQ 189 (942)
T ss_pred ccceeccCCCccEEEEecc----------cceEEEEccccceeeeeeeccccc----ccceEECCccCeeeee
Confidence 5899999999998877653 367888899888665555444432 6789999999998874
No 93
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.40 E-value=0.025 Score=55.09 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=50.5
Q ss_pred CCCeeeeecCCCC--CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEe
Q 007338 18 LGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (607)
Q Consensus 18 ~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws 95 (607)
++...++...... .....|.+||||+.+||+... ++...|++....+. ...+.... . +..+.|+
T Consensus 9 ~~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~-------~~~~~L~~~~~~~~-~~~~~~g~--~----l~~PS~d 74 (253)
T PF10647_consen 9 GGGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEG-------DGGRSLYVGPAGGP-VRPVLTGG--S----LTRPSWD 74 (253)
T ss_pred CCceeECCCCcCcCCccccceEECCCCCeEEEEEEc-------CCCCEEEEEcCCCc-ceeeccCC--c----ccccccc
Confidence 5566677654332 258899999999999999832 46789999876544 44432111 1 6789999
Q ss_pred cCCeEEEEE
Q 007338 96 NNSTLLIFT 104 (607)
Q Consensus 96 pd~~~l~~~ 104 (607)
+++.+.++.
T Consensus 75 ~~g~~W~v~ 83 (253)
T PF10647_consen 75 PDGWVWTVD 83 (253)
T ss_pred CCCCEEEEE
Confidence 998877663
No 94
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.37 E-value=0.00045 Score=72.92 Aligned_cols=106 Identities=25% Similarity=0.333 Sum_probs=67.5
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchh--HHHhccCeEEE
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSS--LIFLARRFAVL 559 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~--q~la~~GY~Vl 559 (607)
...+.++-+||++|..-||.|++- .|+|||+.-.-.||. .. .+. +......-. ++||++||+|+
T Consensus 19 ~~~v~V~MRDGvrL~~dIy~Pa~~-----g~~Pvll~~~~~Py~------k~-~~~--~~~~~~~~p~~~~~aa~GYavV 84 (563)
T COG2936 19 ERDVMVPMRDGVRLAADIYRPAGA-----GPLPVLLSRTRLPYR------KR-NGT--FGPQLSALPQPAWFAAQGYAVV 84 (563)
T ss_pred eeeeeEEecCCeEEEEEEEccCCC-----CCCceeEEeeccccc------cc-ccc--CcchhhcccccceeecCceEEE
Confidence 445777889999999999999963 245988875411111 11 011 111111112 48999999999
Q ss_pred eCCCCceecc-CCCC-chhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 560 AGPSIPIIGE-GLWS-NWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 560 ~~~~~~~~g~-g~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
. .++ +|. ++++ ..-+..+...|.-+.|+||.++.+-+++--|
T Consensus 85 ~-qDv--RG~~~SeG~~~~~~~~E~~Dg~D~I~Wia~QpWsNG~Vgm 128 (563)
T COG2936 85 N-QDV--RGRGGSEGVFDPESSREAEDGYDTIEWLAKQPWSNGNVGM 128 (563)
T ss_pred E-ecc--cccccCCcccceeccccccchhHHHHHHHhCCccCCeeee
Confidence 7 544 443 3331 2222236889999999999999998876554
No 95
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=97.36 E-value=0.00037 Score=76.28 Aligned_cols=93 Identities=22% Similarity=0.347 Sum_probs=60.4
Q ss_pred ECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCc-CCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNE-FSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 488 ~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~-~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
+..||.+|.+.++.|.+ . + +.|+||+.||- +.... .........++|+++||+|+. .+.
T Consensus 2 ~~~DG~~L~~~~~~P~~-~--~--~~P~Il~~~gy------------g~~~~~~~~~~~~~~~~l~~~Gy~vv~-~D~-- 61 (550)
T TIGR00976 2 PMRDGTRLAIDVYRPAG-G--G--PVPVILSRTPY------------GKDAGLRWGLDKTEPAWFVAQGYAVVI-QDT-- 61 (550)
T ss_pred cCCCCCEEEEEEEecCC-C--C--CCCEEEEecCC------------CCchhhccccccccHHHHHhCCcEEEE-Eec--
Confidence 56899999999999975 1 2 45999998752 10000 001111235789999999998 554
Q ss_pred eccCCC-CchhhH-HHHhhcHHHHHHHHHHhccccc
Q 007338 567 IGEGLW-SNWFQV-QRLLLKKLFDVEWLIQAELLLE 600 (607)
Q Consensus 567 ~g~g~~-~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ 600 (607)
+|.|.. +..... .....|+.+.|+||..+.+.++
T Consensus 62 RG~g~S~g~~~~~~~~~~~D~~~~i~~l~~q~~~~~ 97 (550)
T TIGR00976 62 RGRGASEGEFDLLGSDEAADGYDLVDWIAKQPWCDG 97 (550)
T ss_pred cccccCCCceEecCcccchHHHHHHHHHHhCCCCCC
Confidence 343332 111111 4678899999999999988764
No 96
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.056 Score=55.96 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=81.8
Q ss_pred eeccceEEEEeCCCC--eeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCC
Q 007338 153 YYTTAQLVLGSLDGT--AKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPA 230 (607)
Q Consensus 153 ~~~~~~l~~~~~~g~--~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 230 (607)
||+...||.++.+|. ..+|...+-+.++.|||+|+.++++..- + +..+-++|+++.-+-.+.
T Consensus 247 YYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf-----M------PAkvtifnlr~~~v~df~----- 310 (566)
T KOG2315|consen 247 YYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF-----M------PAKVTIFNLRGKPVFDFP----- 310 (566)
T ss_pred ccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec-----c------cceEEEEcCCCCEeEeCC-----
Confidence 456788999998774 5567766777899999999988777431 1 457888898887554442
Q ss_pred CCCCcccccccCCCCc-ceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecC-cccceeeEcC
Q 007338 231 EDIPVCYNSVREGMRS-ISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLD-LRFRSVSWCD 308 (607)
Q Consensus 231 ~~~~~~~~~~~~~~~~-~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~-~~~~~~~ws~ 308 (607)
.|+|+ +-|+|.|.. +++..+ ++ ....+-+||+ . ..+.+.... ..-+-..|+|
T Consensus 311 -----------egpRN~~~fnp~g~i-i~lAGF-GN--------L~G~mEvwDv--~---n~K~i~~~~a~~tt~~eW~P 364 (566)
T KOG2315|consen 311 -----------EGPRNTAFFNPHGNI-ILLAGF-GN--------LPGDMEVWDV--P---NRKLIAKFKAANTTVFEWSP 364 (566)
T ss_pred -----------CCCccceEECCCCCE-EEEeec-CC--------CCCceEEEec--c---chhhccccccCCceEEEEcC
Confidence 35565 889999983 333322 11 1222333443 0 112233322 2244578999
Q ss_pred CCcEEEEEEec----cccceEEEEE
Q 007338 309 DSLALVNETWY----KTSQTRTWLV 329 (607)
Q Consensus 309 Dg~~l~~~~~~----~~~~~~l~~~ 329 (607)
||..|+..+-. .+.-.+||.+
T Consensus 365 dGe~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 365 DGEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CCcEEEEEeccccEEecCCeEEEEe
Confidence 99987655311 1233466655
No 97
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.23 Score=51.56 Aligned_cols=72 Identities=17% Similarity=0.187 Sum_probs=46.5
Q ss_pred cccceEEccCCCEEEEEeecCcc-cccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEE-DNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~-~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|||.-++|+--+..... ......+.+|.++|+++|...+-....... .....-|.||-|++++..+
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-~~~WP~frWS~DdKy~Arm 323 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-YLKWPIFRWSHDDKYFARM 323 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-ccccceEEeccCCceeEEe
Confidence 67888999999998765543110 001134578999999999876554321111 0113468999999987765
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.11 Score=50.25 Aligned_cols=152 Identities=15% Similarity=0.269 Sum_probs=77.0
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceE
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTL 257 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l 257 (607)
.++-+.-++++|.-.+. .++|.+|+++|.....+..+ ......-+.||||+
T Consensus 191 i~iGiA~~~k~imsas~-------------dt~i~lw~lkGq~L~~idtn-------------q~~n~~aavSP~GR--- 241 (420)
T KOG2096|consen 191 INIGIAGNAKYIMSASL-------------DTKICLWDLKGQLLQSIDTN-------------QSSNYDAAVSPDGR--- 241 (420)
T ss_pred EEEeecCCceEEEEecC-------------CCcEEEEecCCceeeeeccc-------------cccccceeeCCCCc---
Confidence 35666666777766543 24789999997766555432 12223467899998
Q ss_pred EEEEeecCCCCccccCCCceEEeccCCCCCCC--Cce---eeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCC
Q 007338 258 YWVEAQDRGDANVEVSPRDIIYTQPAEPAEGE--KPE---ILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPG 332 (607)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~---~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~ 332 (607)
|+..- +-.+ .+.....+|. .+|. +.. .|......+..++||+++.+++..+ +++.-+||-.|..
T Consensus 242 -Fia~~-gFTp--DVkVwE~~f~-----kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS--kDG~wriwdtdVr 310 (420)
T KOG2096|consen 242 -FIAVS-GFTP--DVKVWEPIFT-----KDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS--KDGKWRIWDTDVR 310 (420)
T ss_pred -EEEEe-cCCC--CceEEEEEec-----cCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe--cCCcEEEeeccce
Confidence 33221 1111 1111112222 1220 111 2333444567789999988766653 2344578766653
Q ss_pred CCC-CCceEeeec-cc-cccccCCCCCCeeeCCCCCEEEEEe
Q 007338 333 SKD-VAPRVLFDR-VF-ENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 333 ~~~-~~~~~l~~~-~~-~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
=.. +.++.|-.+ .+ ...-+.| ..+..+|.|+.++...
T Consensus 311 Y~~~qDpk~Lk~g~~pl~aag~~p--~RL~lsP~g~~lA~s~ 350 (420)
T KOG2096|consen 311 YEAGQDPKILKEGSAPLHAAGSEP--VRLELSPSGDSLAVSF 350 (420)
T ss_pred EecCCCchHhhcCCcchhhcCCCc--eEEEeCCCCcEEEeec
Confidence 211 234444111 11 1111111 1377899999776654
No 99
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.25 E-value=0.0061 Score=60.61 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=42.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.++..+|-|+|++|+-.+- +....|| |+.+++...+..... +.+..++|.+||.++..
T Consensus 263 RVs~VafHPsG~~L~Tasf--------D~tWRlW--D~~tk~ElL~QEGHs----~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASF--------DSTWRLW--DLETKSELLLQEGHS----KGVFSIAFQPDGSLAAT 320 (459)
T ss_pred hheeeeecCCCceeeeccc--------ccchhhc--ccccchhhHhhcccc----cccceeEecCCCceeec
Confidence 6899999999999987663 4445555 898887654433222 23778999999999876
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.019 Score=62.69 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=47.8
Q ss_pred CCCee-eeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec
Q 007338 18 LGPEK-EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 18 ~g~~~-~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
.+++. .|+.|+- .++..+++-+|+++|+.+. ...|-+++.........+...+. .+..+.+.|
T Consensus 85 s~~~~~iL~Rftl--p~r~~~v~g~g~~iaagsd----------D~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p 148 (933)
T KOG1274|consen 85 SGEEDTILARFTL--PIRDLAVSGSGKMIAAGSD----------DTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDP 148 (933)
T ss_pred CCCccceeeeeec--cceEEEEecCCcEEEeecC----------ceeEEEEeccccchheeecccCC----ceeeeeEcC
Confidence 45444 3443332 5789999999999999864 36777778776654444433332 366888889
Q ss_pred CCeEEEEE
Q 007338 97 NSTLLIFT 104 (607)
Q Consensus 97 d~~~l~~~ 104 (607)
.+.+|+.+
T Consensus 149 ~~~fLAvs 156 (933)
T KOG1274|consen 149 KGNFLAVS 156 (933)
T ss_pred CCCEEEEE
Confidence 99988875
No 101
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.24 E-value=0.012 Score=62.65 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=78.8
Q ss_pred CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCe
Q 007338 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.-|+.| .|...+.+..+.-|.|.. ++... .+..+|++|++++|+..-+....+++ ++.+.++|++.
T Consensus 426 NfRTft-~P~p~QfscvavD~sGel-V~AG~--------~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~ 491 (893)
T KOG0291|consen 426 NFRTFT-SPEPIQFSCVAVDPSGEL-VCAGA--------QDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGS 491 (893)
T ss_pred eeeeec-CCCceeeeEEEEcCCCCE-EEeec--------cceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccC
Confidence 455666 456557777888888975 45443 34689999999999987666555554 77888999988
Q ss_pred EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEE-EeCCCCeeecCCCCcee
Q 007338 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVL-GSLDGTAKDFGTPAVYT 178 (607)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~g~~~~lt~~~~~~ 178 (607)
+|+..+- |. +.++|- ++-.|+++.|.....+.
T Consensus 492 ~LaS~SW----------------------------------------Dk-------TVRiW~if~s~~~vEtl~i~sdvl 524 (893)
T KOG0291|consen 492 LLASGSW----------------------------------------DK-------TVRIWDIFSSSGTVETLEIRSDVL 524 (893)
T ss_pred eEEeccc----------------------------------------cc-------eEEEEEeeccCceeeeEeecccee
Confidence 8776421 11 234442 22245666665555567
Q ss_pred eeeeCCCCceEEEEEcc
Q 007338 179 AVEPSPDQKYVLITSMH 195 (607)
Q Consensus 179 ~~~~SpDg~~i~~~~~~ 195 (607)
.++++|||+.|++++.+
T Consensus 525 ~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATLD 541 (893)
T ss_pred EEEEcCCCCeEEEEEec
Confidence 89999999999999764
No 102
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.16 Score=49.01 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=47.3
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCe
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
+..++..-+.+....-+||+-|.+||.-.. ...|.++|..+-.+ +.++.+-. . +..+.||+||+
T Consensus 14 PEel~~tld~~~a~~~~Fs~~G~~lAvGc~----------nG~vvI~D~~T~~iar~lsaH~~-p----i~sl~WS~dgr 78 (405)
T KOG1273|consen 14 PEELTHTLDNPLAECCQFSRWGDYLAVGCA----------NGRVVIYDFDTFRIARMLSAHVR-P----ITSLCWSRDGR 78 (405)
T ss_pred hHhhceeccCCccceEEeccCcceeeeecc----------CCcEEEEEccccchhhhhhcccc-c----eeEEEecCCCC
Confidence 334443333334678899999999999875 25677888887544 45543332 1 67899999999
Q ss_pred EEEEE
Q 007338 100 LLIFT 104 (607)
Q Consensus 100 ~l~~~ 104 (607)
.|+.+
T Consensus 79 ~Llts 83 (405)
T KOG1273|consen 79 KLLTS 83 (405)
T ss_pred Eeeee
Confidence 88875
No 103
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.19 E-value=0.084 Score=50.37 Aligned_cols=192 Identities=15% Similarity=0.195 Sum_probs=110.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-d~~~l~~~~~~~~~ 110 (607)
+.+.-+|-+|+..| -.+ +....-++|+++|+..+......+. +-.+..+| +++.++...-+
T Consensus 147 ylScC~f~dD~~il-T~S----------GD~TCalWDie~g~~~~~f~GH~gD----V~slsl~p~~~ntFvSg~cD--- 208 (343)
T KOG0286|consen 147 YLSCCRFLDDNHIL-TGS----------GDMTCALWDIETGQQTQVFHGHTGD----VMSLSLSPSDGNTFVSGGCD--- 208 (343)
T ss_pred eeEEEEEcCCCceE-ecC----------CCceEEEEEcccceEEEEecCCccc----EEEEecCCCCCCeEEecccc---
Confidence 68888999887543 332 2345566699999876665433332 45677777 56665542100
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeee-cC-CCCceeeeeeCCCCc
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FG-TPAVYTAVEPSPDQK 187 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-lt-~~~~~~~~~~SpDg~ 187 (607)
.... ++|+ ++..+| +. ....+..+.|-|+|.
T Consensus 209 --------------------------------------------~~ak--lWD~R~~~c~qtF~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 209 --------------------------------------------KSAK--LWDVRSGQCVQTFEGHESDINSVRFFPSGD 242 (343)
T ss_pred --------------------------------------------ccee--eeeccCcceeEeecccccccceEEEccCCC
Confidence 0111 2233 343222 32 233567899999998
Q ss_pred eEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCC
Q 007338 188 YVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGD 267 (607)
Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~ 267 (607)
.++--+.+ ....++|+.....-.+.. .+....++.++.+|..|+ |.|....+.
T Consensus 243 afatGSDD-------------~tcRlyDlRaD~~~a~ys----------~~~~~~gitSv~FS~SGR--lLfagy~d~-- 295 (343)
T KOG0286|consen 243 AFATGSDD-------------ATCRLYDLRADQELAVYS----------HDSIICGITSVAFSKSGR--LLFAGYDDF-- 295 (343)
T ss_pred eeeecCCC-------------ceeEEEeecCCcEEeeec----------cCcccCCceeEEEccccc--EEEeeecCC--
Confidence 77655432 245566776542222211 112234455688998887 555433222
Q ss_pred CccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEE
Q 007338 268 ANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTW 327 (607)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~ 327 (607)
...+||. ..++..-.|..++.+++.+..+|||.++...+|.. .-+||
T Consensus 296 ---------~c~vWDt--lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs--~lriW 342 (343)
T KOG0286|consen 296 ---------TCNVWDT--LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDS--TLRIW 342 (343)
T ss_pred ---------ceeEeec--cccceEEEeeccCCeeEEEEECCCCcEEEecchhH--heeec
Confidence 2344453 44434445777888999999999999999887742 34555
No 104
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.14 E-value=0.25 Score=48.67 Aligned_cols=124 Identities=18% Similarity=0.182 Sum_probs=75.7
Q ss_pred CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCe
Q 007338 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.+-.+++.-+ .+....||-||.+||-- +-...|.++..++|..+.....+-. .+..+.|.|-+.
T Consensus 98 ~~~eltgHKD--SVt~~~FshdgtlLATG----------dmsG~v~v~~~stg~~~~~~~~e~~----dieWl~WHp~a~ 161 (399)
T KOG0296|consen 98 FAGELTGHKD--SVTCCSFSHDGTLLATG----------DMSGKVLVFKVSTGGEQWKLDQEVE----DIEWLKWHPRAH 161 (399)
T ss_pred ceeEecCCCC--ceEEEEEccCceEEEec----------CCCccEEEEEcccCceEEEeecccC----ceEEEEeccccc
Confidence 3444554333 58999999999887654 2345777777877766543321111 156778888777
Q ss_pred EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeeecCCC--Cc
Q 007338 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKDFGTP--AV 176 (607)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~lt~~--~~ 176 (607)
+++.-. ....+|.+.+ ++...++..+ ..
T Consensus 162 illAG~-------------------------------------------------~DGsvWmw~ip~~~~~kv~~Gh~~~ 192 (399)
T KOG0296|consen 162 ILLAGS-------------------------------------------------TDGSVWMWQIPSQALCKVMSGHNSP 192 (399)
T ss_pred EEEeec-------------------------------------------------CCCcEEEEECCCcceeeEecCCCCC
Confidence 666521 0235566666 3333333222 23
Q ss_pred eeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee
Q 007338 177 YTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (607)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (607)
...-.+.||||+|+.... ...|.+|+++++.+
T Consensus 193 ct~G~f~pdGKr~~tgy~-------------dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 193 CTCGEFIPDGKRILTGYD-------------DGTIIVWNPKTGQP 224 (399)
T ss_pred cccccccCCCceEEEEec-------------CceEEEEecCCCce
Confidence 456789999999987743 23788999998843
No 105
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.12 E-value=0.27 Score=47.03 Aligned_cols=67 Identities=16% Similarity=0.284 Sum_probs=45.3
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCccccccccceEEecCCe
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.|.|.+... .+....||+|+++|+-.++ + ..|.++|.-+.. ...++ .+. .-+-.++++|.+.
T Consensus 48 rr~LkGH~~--Ki~~~~ws~Dsr~ivSaSq--------D--GklIvWDs~TtnK~haip-l~s----~WVMtCA~sPSg~ 110 (343)
T KOG0286|consen 48 RRTLKGHLN--KIYAMDWSTDSRRIVSASQ--------D--GKLIVWDSFTTNKVHAIP-LPS----SWVMTCAYSPSGN 110 (343)
T ss_pred EEEeccccc--ceeeeEecCCcCeEEeecc--------C--CeEEEEEcccccceeEEe-cCc----eeEEEEEECCCCC
Confidence 355554333 5899999999999988775 2 467888988754 44442 222 1255889999988
Q ss_pred EEEEE
Q 007338 100 LLIFT 104 (607)
Q Consensus 100 ~l~~~ 104 (607)
++...
T Consensus 111 ~VAcG 115 (343)
T KOG0286|consen 111 FVACG 115 (343)
T ss_pred eEEec
Confidence 87653
No 106
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.068 Score=51.55 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=30.6
Q ss_pred CCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC
Q 007338 15 DDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA 69 (607)
Q Consensus 15 ~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~ 69 (607)
||+..+.|-+..-.+-...+..+|+||-+.+++...+ ++.|+++-+
T Consensus 117 DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~---------g~~l~vyk~ 162 (420)
T KOG2096|consen 117 DFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR---------GNKLCVYKL 162 (420)
T ss_pred hhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc---------CCEEEEEEe
Confidence 5666666555532222256788999999999998864 356777654
No 107
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.06 E-value=0.038 Score=56.58 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
+.-.+...+|||.|..|+.++. ..+.-++|.+|-+....
T Consensus 213 E~h~i~sl~ys~Tg~~iLvvsg----------~aqakl~DRdG~~~~e~ 251 (641)
T KOG0772|consen 213 ETHQINSLQYSVTGDQILVVSG----------SAQAKLLDRDGFEIVEF 251 (641)
T ss_pred cccccceeeecCCCCeEEEEec----------CcceeEEccCCceeeee
Confidence 4446899999999999988863 46778888887665444
No 108
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.052 Score=57.97 Aligned_cols=80 Identities=21% Similarity=0.239 Sum_probs=50.7
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (607)
|.|.++.. .+...+.+.+++. .+....|+|+|+.|+..+ ....+.++|+.+|+..+........
T Consensus 227 iriwd~~~--~~~~~~~l~gH~~--~v~~~~f~p~g~~i~Sgs----------~D~tvriWd~~~~~~~~~l~~hs~~-- 290 (456)
T KOG0266|consen 227 LRIWDLKD--DGRNLKTLKGHST--YVTSVAFSPDGNLLVSGS----------DDGTVRIWDVRTGECVRKLKGHSDG-- 290 (456)
T ss_pred EEEeeccC--CCeEEEEecCCCC--ceEEEEecCCCCEEEEec----------CCCcEEEEeccCCeEEEeeeccCCc--
Confidence 45566631 1234455554433 589999999996555443 2357888899988875443332222
Q ss_pred ccccceEEecCCeEEEEE
Q 007338 87 AVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 87 ~~~~~~~Wspd~~~l~~~ 104 (607)
+..+.+++|++++...
T Consensus 291 --is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 291 --ISGLAFSPDGNLLVSA 306 (456)
T ss_pred --eEEEEECCCCCEEEEc
Confidence 6778889998887764
No 109
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.05 E-value=0.0032 Score=61.70 Aligned_cols=59 Identities=32% Similarity=0.396 Sum_probs=40.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
-+....|||||++||-.+- +. .+-+++-.+|+-....+..- +.+-.++||.|.|+++..
T Consensus 369 lVn~V~fSPd~r~IASaSF--------Dk--SVkLW~g~tGk~lasfRGHv----~~VYqvawsaDsRLlVS~ 427 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASASF--------DK--SVKLWDGRTGKFLASFRGHV----AAVYQVAWSADSRLLVSG 427 (480)
T ss_pred heeeEEECCCccEEEEeec--------cc--ceeeeeCCCcchhhhhhhcc----ceeEEEEeccCccEEEEc
Confidence 4889999999999988764 33 45555777887432222111 113478999999998874
No 110
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.05 E-value=0.0027 Score=64.78 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=63.1
Q ss_pred ccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCc-hhHHHhccC
Q 007338 477 LASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT-SSLIFLARR 555 (607)
Q Consensus 477 ~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~-~~q~la~~G 555 (607)
.+.++.+...|++.||.+|+++.+.|.+-.+ +.|+||++||- ++...| .+. ..+.|+++|
T Consensus 27 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~----~~~~VvllHG~------------~~~~~~---~~~~~~~~L~~~G 87 (330)
T PLN02298 27 LKGIKGSKSFFTSPRGLSLFTRSWLPSSSSP----PRALIFMVHGY------------GNDISW---TFQSTAIFLAQMG 87 (330)
T ss_pred ccCCccccceEEcCCCCEEEEEEEecCCCCC----CceEEEEEcCC------------CCCcce---ehhHHHHHHHhCC
Confidence 3445667778999999999999998875221 33889998852 111111 111 245788999
Q ss_pred eEEEeCCCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHh
Q 007338 556 FAVLAGPSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 556 Y~Vl~~~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
|.|+. .+.+-+| .. ........+.+|+.+.+++|..+
T Consensus 88 y~V~~-~D~rGhG--~S~~~~~~~~~~~~~~~D~~~~i~~l~~~ 128 (330)
T PLN02298 88 FACFA-LDLEGHG--RSEGLRAYVPNVDLVVEDCLSFFNSVKQR 128 (330)
T ss_pred CEEEE-ecCCCCC--CCCCccccCCCHHHHHHHHHHHHHHHHhc
Confidence 99998 6654433 32 11223466788999999998765
No 111
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.05 E-value=0.35 Score=49.78 Aligned_cols=242 Identities=12% Similarity=0.093 Sum_probs=119.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.....+|||-|.+|++...+ .-.+| .-..+. +|+...... +-.+.+||.+++|..-.....
T Consensus 34 p~~~~~~SP~G~~l~~~~~~---------~V~~~--~g~~~~--~l~~~~~~~----V~~~~fSP~~kYL~tw~~~pi-- 94 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA---------GVECW--GGPSKA--KLVRFRHPD----VKYLDFSPNEKYLVTWSREPI-- 94 (561)
T ss_pred chhheeecCcchheehhhcc---------ceEEc--cccchh--heeeeecCC----ceecccCcccceeeeeccCCc--
Confidence 47789999999998776542 23333 333322 222222211 456788999887765321110
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeee----cCCCC-ceeeeeeCCC
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD----FGTPA-VYTAVEPSPD 185 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~----lt~~~-~~~~~~~SpD 185 (607)
+... .... + .....+++++|. +|.... +..+. ....+.||-|
T Consensus 95 ------------~~pe--------~e~s---p---------~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~ 142 (561)
T COG5354 95 ------------IEPE--------IEIS---P---------FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSID 142 (561)
T ss_pred ------------cChh--------hccC---C---------ccccCceeEEeccCceeEeeccccCCcccccceeeeeec
Confidence 0000 0000 0 011247888887 553221 11121 1226789999
Q ss_pred CceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc-eEEEE-Eee
Q 007338 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS-TLYWV-EAQ 263 (607)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~-~l~~~-~~~ 263 (607)
.++++.... ..|+++++ ++...+..- +.. .-.+.+.++|||.|.. .|++. .-.
T Consensus 143 D~y~ARvv~--------------~sl~i~e~-t~n~~~~p~---~~l-------r~~gi~dFsisP~~n~~~la~~tPEk 197 (561)
T COG5354 143 DKYVARVVG--------------SSLYIHEI-TDNIEEHPF---KNL-------RPVGILDFSISPEGNHDELAYWTPEK 197 (561)
T ss_pred chhhhhhcc--------------CeEEEEec-CCccccCch---hhc-------cccceeeEEecCCCCCceEEEEcccc
Confidence 888876632 36888887 444333211 110 1134567999997432 23332 111
Q ss_pred cCCCCccccCCCceEEeccCCCCCCCCceeeee-cCcccceeeEcCCCcEEEEE--Eec---cc--cceEEEEEcCCCCC
Q 007338 264 DRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNE--TWY---KT--SQTRTWLVCPGSKD 335 (607)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~-~~~~~~~~~ws~Dg~~l~~~--~~~---~~--~~~~l~~~dl~~~~ 335 (607)
.+.. ..+.++.. |.. ....... ....--.+-|.+.|.+++.. +.. +. +...||++++...
T Consensus 198 ~~kp--------a~~~i~sI-p~~--s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~- 265 (561)
T COG5354 198 LNKP--------AMVRILSI-PKN--SVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER- 265 (561)
T ss_pred CCCC--------cEEEEEEc-cCC--CeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-
Confidence 1111 11112221 211 1111111 12233457899999875432 211 11 3468999988752
Q ss_pred CCceEee--eccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 336 VAPRVLF--DRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 336 ~~~~~l~--~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
..+... ...+-+ +.|.|.++.+.+..
T Consensus 266 -~i~V~~~~~~pVhd---------f~W~p~S~~F~vi~ 293 (561)
T COG5354 266 -SIPVEKDLKDPVHD---------FTWEPLSSRFAVIS 293 (561)
T ss_pred -ccceecccccccee---------eeecccCCceeEEe
Confidence 333321 222444 89999999877665
No 112
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.04 E-value=0.25 Score=48.57 Aligned_cols=226 Identities=14% Similarity=0.119 Sum_probs=119.3
Q ss_pred cccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 007338 32 KINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
+-..+..+| ++..++|.+ | ...-++++|..+|+..+....+.+. -.++.-.||+||++||.+..+
T Consensus 6 RgH~~a~~p~~~~avafaR-R--------PG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEnd--- 71 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFAR-R--------PGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEND--- 71 (305)
T ss_pred cccceeeCCCCCeEEEEEe-C--------CCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEeccc---
Confidence 467888999 555555554 3 3578999999999876544333322 123466899999999986211
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCee---ecCCCC-ceeeeeeCCCC
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAK---DFGTPA-VYTAVEPSPDQ 186 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~---~lt~~~-~~~~~~~SpDg 186 (607)
+.. ....|-++|+....+ .+...+ .-..+.+.|||
T Consensus 72 ---------------------------~~~--------------g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG 110 (305)
T PF07433_consen 72 ---------------------------YET--------------GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG 110 (305)
T ss_pred ---------------------------cCC--------------CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC
Confidence 000 134555666643222 333333 22478899999
Q ss_pred ceEEEEEccC---CCccccCCC--cCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEE
Q 007338 187 KYVLITSMHR---PYSYKVPCA--RFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (607)
Q Consensus 187 ~~i~~~~~~~---~~~~~~~~~--~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (607)
+.|++..-.. |+.-..+.+ .-...|..+|..+|++..-..+|-. .-....|.++|.+||. + +..
T Consensus 111 ~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~--------~~~lSiRHLa~~~~G~--V-~~a 179 (305)
T PF07433_consen 111 ETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD--------LHQLSIRHLAVDGDGT--V-AFA 179 (305)
T ss_pred CEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc--------ccccceeeEEecCCCc--E-EEE
Confidence 9998884321 211111111 1124677888887764432222111 0123456799999986 2 333
Q ss_pred eecCCCCccccCCCceEEeccCCCCCCCCcee-------eeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 262 AQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-------LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-------l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
.+..++.. .....+..... |...+. .........+++++++|..++..+.. . ..+.++|.++
T Consensus 180 ~Q~qg~~~---~~~PLva~~~~----g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr-G--g~~~~~d~~t 248 (305)
T PF07433_consen 180 MQYQGDPG---DAPPLVALHRR----GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR-G--GRVAVWDAAT 248 (305)
T ss_pred EecCCCCC---ccCCeEEEEcC----CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC-C--CEEEEEECCC
Confidence 33333221 11122222221 101111 11223456789999998766544321 2 3555668777
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.4 Score=46.38 Aligned_cols=70 Identities=14% Similarity=0.089 Sum_probs=40.9
Q ss_pred cceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCc---ccceeeEcCCCcEEEEEEecccc
Q 007338 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDL---RFRSVSWCDDSLALVNETWYKTS 322 (607)
Q Consensus 246 ~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~---~~~~~~ws~Dg~~l~~~~~~~~~ 322 (607)
.+.+|||||.+|+- ...+.++++++ ++|........... -.....|+|||+.++.... +
T Consensus 192 ~l~FS~dGK~iLls-------------T~~s~~~~lDA--f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~--d- 253 (311)
T KOG1446|consen 192 DLEFSPDGKSILLS-------------TNASFIYLLDA--FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD--D- 253 (311)
T ss_pred eeEEcCCCCEEEEE-------------eCCCcEEEEEc--cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC--C-
Confidence 58999999965431 12245677775 77732222222111 1246789999997665432 2
Q ss_pred ceEEEEEcCCCC
Q 007338 323 QTRTWLVCPGSK 334 (607)
Q Consensus 323 ~~~l~~~dl~~~ 334 (607)
.+|++++++++
T Consensus 254 -g~i~vw~~~tg 264 (311)
T KOG1446|consen 254 -GTIHVWNLETG 264 (311)
T ss_pred -CcEEEEEcCCC
Confidence 35667777773
No 114
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.95 E-value=0.036 Score=56.68 Aligned_cols=246 Identities=13% Similarity=0.166 Sum_probs=120.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-----eecccCCCccccccccceEEecCCe-EEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNST-LLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-----~~lt~~~~~~~~~~~~~~~Wspd~~-~l~~~~ 105 (607)
-++...+-|.|.+++--+ ....+-.||.++... ++|-..+ .-.+..++||+.+. +|+.+.
T Consensus 169 ~Vsal~~Dp~GaR~~sGs----------~Dy~v~~wDf~gMdas~~~fr~l~P~E----~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGS----------LDYTVKFWDFQGMDASMRSFRQLQPCE----THQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred EEEEeeecCCCceeeecc----------ccceEEEEecccccccchhhhccCccc----ccccceeeecCCCCeEEEEec
Confidence 478888999999865432 346788889987653 3332111 12256899999855 555531
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-C--CCeeecCCCCceeeeee
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D--GTAKDFGTPAVYTAVEP 182 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--g~~~~lt~~~~~~~~~~ 182 (607)
.. +++++.. ++..+...-.+..|+.|+ . |-.-. +...+|
T Consensus 235 ~a--------------------------qakl~DR------dG~~~~e~~KGDQYI~Dm~nTKGHia~------lt~g~w 276 (641)
T KOG0772|consen 235 SA--------------------------QAKLLDR------DGFEIVEFSKGDQYIRDMYNTKGHIAE------LTCGCW 276 (641)
T ss_pred Cc--------------------------ceeEEcc------CCceeeeeeccchhhhhhhccCCceee------eecccc
Confidence 11 0111110 110010112345566665 1 22222 346789
Q ss_pred CCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC-CeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEE
Q 007338 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG-KLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVE 261 (607)
Q Consensus 183 SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~ 261 (607)
.|+.+..+.+...+ ..|.+|+++. .+-.++..- ....+.+..+....|++||+.+ ..
T Consensus 277 hP~~k~~FlT~s~D------------gtlRiWdv~~~k~q~qVik~-------k~~~g~Rv~~tsC~~nrdg~~i---Aa 334 (641)
T KOG0772|consen 277 HPDNKEEFLTCSYD------------GTLRIWDVNNTKSQLQVIKT-------KPAGGKRVPVTSCAWNRDGKLI---AA 334 (641)
T ss_pred ccCcccceEEecCC------------CcEEEEecCCchhheeEEee-------ccCCCcccCceeeecCCCcchh---hh
Confidence 99988888776432 3677888763 222222210 0000112223358999999941 11
Q ss_pred eecCC--CCcccc--CCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCC
Q 007338 262 AQDRG--DANVEV--SPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVA 337 (607)
Q Consensus 262 ~~~~~--~~~~~~--~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~ 337 (607)
....| +.|..- -.+-..++.+ -+.....++.+.||+||+.|++... ++.-++| ||..-
T Consensus 335 gc~DGSIQ~W~~~~~~v~p~~~vk~-----------AH~~g~~Itsi~FS~dg~~LlSRg~--D~tLKvW--DLrq~--- 396 (641)
T KOG0772|consen 335 GCLDGSIQIWDKGSRTVRPVMKVKD-----------AHLPGQDITSISFSYDGNYLLSRGF--DDTLKVW--DLRQF--- 396 (641)
T ss_pred cccCCceeeeecCCcccccceEeee-----------ccCCCCceeEEEeccccchhhhccC--CCceeee--ecccc---
Confidence 11111 111100 0001111111 1112235788999999998887643 2334555 55542
Q ss_pred ceEeeec-cccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 338 PRVLFDR-VFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 338 ~~~l~~~-~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
.+.|.-+ .....|. ...+.+|||.+.|+....
T Consensus 397 kkpL~~~tgL~t~~~---~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFP---GTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccchhhhcCCCccCC---CCccccCCCceEEEeccc
Confidence 1333210 0111111 112789999887765443
No 115
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.83 E-value=0.056 Score=51.20 Aligned_cols=157 Identities=15% Similarity=0.190 Sum_probs=87.2
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
++-.-+++.-.+..-++..+|||.-....+++.. -...+-++|+++-+.++-.-...+ .+..+..|||
T Consensus 136 g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s--------~DktvKvWnl~~~~l~~~~~gh~~----~v~t~~vSpD 203 (315)
T KOG0279|consen 136 GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS--------WDKTVKVWNLRNCQLRTTFIGHSG----YVNTVTVSPD 203 (315)
T ss_pred ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc--------CCceEEEEccCCcchhhccccccc----cEEEEEECCC
Confidence 4334444432213368999999997444444432 124566679988776654333332 3668899999
Q ss_pred CeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC-CeeecCCCC
Q 007338 98 STLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGTPA 175 (607)
Q Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~lt~~~ 175 (607)
|.+.... |+ ..+++++|+ .+ ....+....
T Consensus 204 GslcasG-------------------------gk------------------------dg~~~LwdL~~~k~lysl~a~~ 234 (315)
T KOG0279|consen 204 GSLCASG-------------------------GK------------------------DGEAMLWDLNEGKNLYSLEAFD 234 (315)
T ss_pred CCEEecC-------------------------CC------------------------CceEEEEEccCCceeEeccCCC
Confidence 9987752 11 134445555 44 344444555
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCC--cceeecCC
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMR--SISWRADK 253 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~wspdg 253 (607)
.+.+++|||+ ++.+.... ...|-+||++++.+ +.++.....-+ -.....++ ..+||+||
T Consensus 235 ~v~sl~fspn-rywL~~at-------------~~sIkIwdl~~~~~--v~~l~~d~~g~---s~~~~~~~clslaws~dG 295 (315)
T KOG0279|consen 235 IVNSLCFSPN-RYWLCAAT-------------ATSIKIWDLESKAV--VEELKLDGIGP---SSKAGDPICLSLAWSADG 295 (315)
T ss_pred eEeeEEecCC-ceeEeecc-------------CCceEEEeccchhh--hhhcccccccc---ccccCCcEEEEEEEcCCC
Confidence 6678999998 44444332 12578889887632 22211111101 01112233 49999999
Q ss_pred C
Q 007338 254 P 254 (607)
Q Consensus 254 ~ 254 (607)
.
T Consensus 296 ~ 296 (315)
T KOG0279|consen 296 Q 296 (315)
T ss_pred c
Confidence 8
No 116
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.73 E-value=0.0053 Score=59.03 Aligned_cols=100 Identities=15% Similarity=0.066 Sum_probs=66.0
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.+.+++.+.| .++.|++.+|.+-. +.|+||.+|+= .|.+.+ .......||++||+|+.
T Consensus 2 ~~~v~~~~~~-~~~~~~~a~P~~~~-----~~P~VIv~hei------------~Gl~~~---i~~~a~rlA~~Gy~v~~- 59 (236)
T COG0412 2 GTDVTIPAPD-GELPAYLARPAGAG-----GFPGVIVLHEI------------FGLNPH---IRDVARRLAKAGYVVLA- 59 (236)
T ss_pred CcceEeeCCC-ceEeEEEecCCcCC-----CCCEEEEEecc------------cCCchH---HHHHHHHHHhCCcEEEe-
Confidence 3567888777 89999999998622 23999988742 111110 11124799999999998
Q ss_pred CCCcee-ccCC----CC----c-----hhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 562 PSIPII-GEGL----WS----N-----WFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 562 ~~~~~~-g~g~----~~----~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
|++-.+ |... .. . -.+ .+.+.|+.++++||.++..+|.+++.
T Consensus 60 Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~a~~~~L~~~~~~~~~~ig 115 (236)
T COG0412 60 PDLYGRQGDPTDIEDEPAELETGLVERVDP-AEVLADIDAALDYLARQPQVDPKRIG 115 (236)
T ss_pred chhhccCCCCCcccccHHHHhhhhhccCCH-HHHHHHHHHHHHHHHhCCCCCCceEE
Confidence 655322 2111 11 1 112 56788999999999999988888764
No 117
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.70 E-value=0.23 Score=51.06 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=84.2
Q ss_pred ceeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCC--EEEEEeecCcccccCCCceeEEEEECCCCceeecccC
Q 007338 3 FFTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGK--RIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 3 ~~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~--~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
..+.|++|.+.+..+....+.|. +. .+.+..|||-|+ -|||-..... ..-..+-++.+.-+.....-..
T Consensus 150 v~~sl~i~e~t~n~~~~p~~~lr--~~--gi~dFsisP~~n~~~la~~tPEk~-----~kpa~~~i~sIp~~s~l~tk~l 220 (561)
T COG5354 150 VGSSLYIHEITDNIEEHPFKNLR--PV--GILDFSISPEGNHDELAYWTPEKL-----NKPAMVRILSIPKNSVLVTKNL 220 (561)
T ss_pred ccCeEEEEecCCccccCchhhcc--cc--ceeeEEecCCCCCceEEEEccccC-----CCCcEEEEEEccCCCeeeeeee
Confidence 46789999965333333333332 12 588999999644 4666654321 1123344444444433222111
Q ss_pred CCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
.. ..-..+.|.+.++.+.+....+ +. .++ .|++.+.||
T Consensus 221 fk----~~~~qLkW~~~g~~ll~l~~t~-----------------------------~k------snK---syfgesnLy 258 (561)
T COG5354 221 FK----VSGVQLKWQVLGKYLLVLVMTH-----------------------------TK------SNK---SYFGESNLY 258 (561)
T ss_pred Ee----ecccEEEEecCCceEEEEEEEe-----------------------------ee------ccc---ceeccceEE
Confidence 11 0123788998888666542111 00 011 124568899
Q ss_pred EEeCCCCeeec--CCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 161 LGSLDGTAKDF--GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 161 ~~~~~g~~~~l--t~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
++++++.-.++ ...+.+.++.|+|+++++++.+.-- +..+-.+|+.+.
T Consensus 259 l~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~-----------pa~~s~~~lr~N 308 (561)
T COG5354 259 LLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYM-----------PASVSVFDLRGN 308 (561)
T ss_pred EEeecccccceeccccccceeeeecccCCceeEEeccc-----------ccceeecccccc
Confidence 99986532222 2234567999999999988886321 234566677665
No 118
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.061 Score=55.70 Aligned_cols=147 Identities=10% Similarity=0.160 Sum_probs=89.1
Q ss_pred ccceEEccCCCEEEEEeecCc--ccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDE--EDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~--~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
--...|.+-|..|..+...+. .+..+-+...||++++. |+...+-=..++. +-++.|+++++-+....
T Consensus 220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GP----Vhdv~W~~s~~EF~Vvy----- 289 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGP----VHDVTWSPSGREFAVVY----- 289 (566)
T ss_pred eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCC----ceEEEECCCCCEEEEEE-----
Confidence 345789999999998876532 22223567889999998 4443331113443 66899999987544321
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCCCeeecCCCCceeeeeeCCCCceEE
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTPAVYTAVEPSPDQKYVL 190 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~lt~~~~~~~~~~SpDg~~i~ 190 (607)
| . -...+-++|+.|.+.--...+-...+-|||.|+.|+
T Consensus 290 -------------------G---------f--------------MPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~ 327 (566)
T KOG2315|consen 290 -------------------G---------F--------------MPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIIL 327 (566)
T ss_pred -------------------e---------c--------------ccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEE
Confidence 0 0 123444556655443322223335678999999999
Q ss_pred EEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 191 ITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
++.-. +.+.++-+||+.+ .+.|.... ..+..-+.|+|||+.
T Consensus 328 lAGFG----------NL~G~mEvwDv~n--~K~i~~~~------------a~~tt~~eW~PdGe~ 368 (566)
T KOG2315|consen 328 LAGFG----------NLPGDMEVWDVPN--RKLIAKFK------------AANTTVFEWSPDGEY 368 (566)
T ss_pred EeecC----------CCCCceEEEeccc--hhhccccc------------cCCceEEEEcCCCcE
Confidence 98532 1245788999877 34443311 122234999999983
No 119
>PRK10566 esterase; Provisional
Probab=96.61 E-value=0.0068 Score=58.98 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=58.9
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
.++.+...+...+|.|.+- .++ +.|+||++|+.. ++...+ ....+.|+++||.|+. ++.+.
T Consensus 4 ~~~~~~~~~~~~~~~p~~~-~~~--~~p~vv~~HG~~-----------~~~~~~----~~~~~~l~~~G~~v~~-~d~~g 64 (249)
T PRK10566 4 IETRELAGIEVLHAFPAGQ-RDT--PLPTVFFYHGFT-----------SSKLVY----SYFAVALAQAGFRVIM-PDAPM 64 (249)
T ss_pred EEEEEecCcceEEEcCCCC-CCC--CCCEEEEeCCCC-----------cccchH----HHHHHHHHhCCCEEEE-ecCCc
Confidence 3344444566788889752 223 349999988531 111111 1235799999999998 66544
Q ss_pred ecc--CCC---CchhhH---HHHhhcHHHHHHHHHHhcccccccc
Q 007338 567 IGE--GLW---SNWFQV---QRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 567 ~g~--g~~---~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
.|. ++. ....|+ ....+++.+++++|.+++.+|.+++
T Consensus 65 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 109 (249)
T PRK10566 65 HGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREEGWLLDDRL 109 (249)
T ss_pred ccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcCCcCccce
Confidence 332 111 111222 3446778889999999998888764
No 120
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.58 E-value=0.98 Score=52.09 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=36.3
Q ss_pred cccceEEccC-CCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec-CCeEEEEE
Q 007338 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN-NSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp-d~~~l~~~ 104 (607)
.+....|+|. +++||... ....|.+||+.+++.......... .+..+.|+| ++.+|+..
T Consensus 534 ~v~~l~~~~~~~~~las~~----------~Dg~v~lWd~~~~~~~~~~~~H~~----~V~~l~~~p~~~~~L~Sg 594 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSN----------FEGVVQVWDVARSQLVTEMKEHEK----RVWSIDYSSADPTLLASG 594 (793)
T ss_pred ceeeEEeccCCCCEEEEEe----------CCCeEEEEECCCCeEEEEecCCCC----CEEEEEEcCCCCCEEEEE
Confidence 4677899875 55554433 235788889988765433222121 266889996 57776664
No 121
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.51 E-value=0.033 Score=55.36 Aligned_cols=224 Identities=15% Similarity=0.225 Sum_probs=117.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.+...+|+|+|++|+..+. .+...|| +..+=..+.+-...+. .+..+.||.++..++.....
T Consensus 98 ~V~~v~WtPeGRRLltgs~--------SGEFtLW--Ng~~fnFEtilQaHDs----~Vr~m~ws~~g~wmiSgD~g---- 159 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQ--------SGEFTLW--NGTSFNFETILQAHDS----PVRTMKWSHNGTWMISGDKG---- 159 (464)
T ss_pred ceeeEEEcCCCceeEeecc--------cccEEEe--cCceeeHHHHhhhhcc----cceeEEEccCCCEEEEcCCC----
Confidence 4778999999999988775 4566777 3211111111111221 26789999999988863110
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCCceeeeeeCCCCceEE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVL 190 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~~~~~~~~SpDg~~i~ 190 (607)
|- ++ +|.-+++. +..+-.....+..++|||+...++
T Consensus 160 ------------------G~----------iK---------------yWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~ 196 (464)
T KOG0284|consen 160 ------------------GM----------IK---------------YWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFL 196 (464)
T ss_pred ------------------ce----------EE---------------ecccchhhhHHhhHhhhhhhheeccCCCCceeE
Confidence 10 01 00001100 111111113456899999766555
Q ss_pred EEEccCCCccccCCCcCCccEEEEeCC-CCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCc
Q 007338 191 ITSMHRPYSYKVPCARFSQKVQVWTTD-GKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDAN 269 (607)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~ 269 (607)
-.+.+ ..|.+||.. ..+.++|.. + .-.++.+.|-|... ++... +.+
T Consensus 197 t~SdD-------------g~ikiWdf~~~kee~vL~G-H------------gwdVksvdWHP~kg--Liasg---skD-- 243 (464)
T KOG0284|consen 197 TCSDD-------------GTIKIWDFRMPKEERVLRG-H------------GWDVKSVDWHPTKG--LIASG---SKD-- 243 (464)
T ss_pred EecCC-------------CeEEEEeccCCchhheecc-C------------CCCcceeccCCccc--eeEEc---cCC--
Confidence 54432 367788875 444444421 1 12245688888765 22221 111
Q ss_pred cccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEe--eecccc
Q 007338 270 VEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVL--FDRVFE 347 (607)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l--~~~~~~ 347 (607)
+.+.+|| |..|...-.|..+...+..+.|++++..|+..+. + ..+-++|..+- .+.... ....+.
T Consensus 244 ------nlVKlWD--prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk--D--~~~kv~DiR~m-kEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 244 ------NLVKLWD--PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK--D--QSCKVFDIRTM-KELFTYRGHKKDVT 310 (464)
T ss_pred ------ceeEeec--CCCcchhhhhhhccceEEEEEEcCCCCeeEEccC--C--ceEEEEehhHh-HHHHHhhcchhhhe
Confidence 2344455 5666444456666677888999999976665431 1 24555666542 111111 011233
Q ss_pred ccccCCCCCCeeeCCCCCEEEEEe
Q 007338 348 NVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 348 ~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
. +.|.|-.+.++...
T Consensus 311 ~---------~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 311 S---------LTWHPLNESLFTSG 325 (464)
T ss_pred e---------eccccccccceeec
Confidence 3 77888766665544
No 122
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.43 E-value=0.14 Score=55.19 Aligned_cols=80 Identities=6% Similarity=-0.013 Sum_probs=46.9
Q ss_pred EEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCC
Q 007338 278 IYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPM 357 (607)
Q Consensus 278 ~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~ 357 (607)
+.+|++ .+|...+..+.+...+..+++||+|+.|+... +++ .|.+.|+.++. -...+.++ .+... .
T Consensus 559 VRlWDv--~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--ed~--~I~iWDl~~~~-~v~~l~~H--t~ti~-----S 624 (707)
T KOG0263|consen 559 VRLWDV--STGNSVRIFTGHKGPVTALAFSPCGRYLASGD--EDG--LIKIWDLANGS-LVKQLKGH--TGTIY-----S 624 (707)
T ss_pred EEEEEc--CCCcEEEEecCCCCceEEEEEcCCCceEeecc--cCC--cEEEEEcCCCc-chhhhhcc--cCcee-----E
Confidence 444554 45534455555667788999999999988753 223 45566888731 12222232 11111 1
Q ss_pred eeeCCCCCEEEEEe
Q 007338 358 MTRTSTGTNVIAKI 371 (607)
Q Consensus 358 ~~~~~dg~~~~~~~ 371 (607)
++++.||..++...
T Consensus 625 lsFS~dg~vLasgg 638 (707)
T KOG0263|consen 625 LSFSRDGNVLASGG 638 (707)
T ss_pred EEEecCCCEEEecC
Confidence 88899998665543
No 123
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.41 E-value=0.61 Score=45.14 Aligned_cols=102 Identities=14% Similarity=0.126 Sum_probs=59.3
Q ss_pred eEEEEECCCCceeecccCCCcc-ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCcccccccccccc
Q 007338 63 RVWIADAETGEAKPLFESPDIC-LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNL 141 (607)
Q Consensus 63 ~L~v~d~~~g~~~~lt~~~~~~-~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 141 (607)
.+.++|+++++.+.+....... .......+...++|+++|....... .
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~---------------------~---------- 109 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGG---------------------A---------- 109 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBC---------------------T----------
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCc---------------------c----------
Confidence 4455699999888776542111 1112347788899997666421100 0
Q ss_pred ccCcccccceeeeccceEEEEeCCCCeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 142 LKDEYDESLFDYYTTAQLVLGSLDGTAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~~~~~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
. . .....||+++.+++.+.+... ..-..+.||||++.|+++... ...|+.++++
T Consensus 110 -~----~-----~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------------~~~i~~~~~~ 164 (246)
T PF08450_consen 110 -S----G-----IDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSF------------NGRIWRFDLD 164 (246)
T ss_dssp -T----C-----GGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETT------------TTEEEEEEEE
T ss_pred -c----c-----ccccceEEECCCCeEEEEecCcccccceEECCcchheeecccc------------cceeEEEecc
Confidence 0 0 011578888887665554322 233589999999998887432 2368888875
No 124
>PTZ00421 coronin; Provisional
Probab=96.39 E-value=1.8 Score=46.48 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=22.3
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.+..+.|+|++..++++... ...|.+||+.+++
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~------------DgtVrIWDl~tg~ 159 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGA------------DMVVNVWDVERGK 159 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeC------------CCEEEEEECCCCe
Confidence 45689999987655555332 2368899988763
No 125
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.38 E-value=0.069 Score=52.56 Aligned_cols=82 Identities=13% Similarity=0.046 Sum_probs=53.4
Q ss_pred eeEEEeccCCCCCCCeeeeecCC----CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYP----DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP 81 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~----~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~ 81 (607)
.|||||+++ -+.|..+. ........+.++.+.+|||-..+ ...+++++|+.+=++.......
T Consensus 107 ~IyIydI~~------MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~--------t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 107 SIYIYDIKD------MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST--------TSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred cEEEEeccc------ceeehhhhccCCCccceEeeccCCCCceEEecCCC--------CCceEEEEEcccceeeeEEEec
Confidence 589999873 33333221 22235556667777799998654 3579999999876554333222
Q ss_pred CccccccccceEEecCCeEEEEEe
Q 007338 82 DICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 82 ~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
++ .+..++++++|.++...+
T Consensus 173 ~~----~lAalafs~~G~llATAS 192 (391)
T KOG2110|consen 173 KG----PLAALAFSPDGTLLATAS 192 (391)
T ss_pred CC----ceeEEEECCCCCEEEEec
Confidence 22 267889999999999863
No 126
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=96.38 E-value=0.01 Score=58.07 Aligned_cols=103 Identities=17% Similarity=0.065 Sum_probs=59.6
Q ss_pred EEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCC-CcCCCCCCchhHHHhccCeEEEeCC
Q 007338 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSP-NEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 484 ~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p-~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
.|.+++..|. +.++++.|.+-. +.|+||++||- ++. +.+..........|+++||.|+. +
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~~~-----~~~~VlllHG~------------g~~~~~~~~~~~~la~~La~~Gy~Vl~-~ 62 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVAVG-----PRGVVIYLPPF------------AEEMNKSRRMVALQARAFAAGGFGVLQ-I 62 (266)
T ss_pred CEEecCCCCc-EEEEEecCCCCC-----CceEEEEECCC------------cccccchhHHHHHHHHHHHHCCCEEEE-E
Confidence 4667776764 679998887521 34889988852 110 01110000114588899999998 6
Q ss_pred CCceecc-CCCCchhhHHHHhhcHHHHHHHHHHhccccccccccc
Q 007338 563 SIPIIGE-GLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEH 606 (607)
Q Consensus 563 ~~~~~g~-g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 606 (607)
+.+..|. .+...+.-....++|+..++++|.+.+. +.=.|+-|
T Consensus 63 Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~~-~~v~LvG~ 106 (266)
T TIGR03101 63 DLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQGH-PPVTLWGL 106 (266)
T ss_pred CCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCC-CCEEEEEE
Confidence 6654442 1112222235678999999999988763 33344443
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.30 E-value=0.08 Score=57.99 Aligned_cols=81 Identities=23% Similarity=0.255 Sum_probs=50.8
Q ss_pred EEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCc-cc-
Q 007338 9 IHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDI-CL- 85 (607)
Q Consensus 9 ~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~-~~- 85 (607)
+.++.| .+..+.+.++ .+.+....+.|.|+.||.+.- ..+|.+|++.++.. ..++..... ..
T Consensus 122 ~~~~~D---~s~~~~lrgh--~apVl~l~~~p~~~fLAvss~----------dG~v~iw~~~~~~~~~tl~~v~k~n~~~ 186 (933)
T KOG1274|consen 122 LLNLDD---SSQEKVLRGH--DAPVLQLSYDPKGNFLAVSSC----------DGKVQIWDLQDGILSKTLTGVDKDNEFI 186 (933)
T ss_pred EEeccc---cchheeeccc--CCceeeeeEcCCCCEEEEEec----------CceEEEEEcccchhhhhcccCCcccccc
Confidence 345553 4455555543 336999999999999998763 35788889988865 344322110 00
Q ss_pred -cccccceEEecC-CeEEEEE
Q 007338 86 -NAVFGSFVWVNN-STLLIFT 104 (607)
Q Consensus 86 -~~~~~~~~Wspd-~~~l~~~ 104 (607)
+.....++|+|+ +++++..
T Consensus 187 ~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 187 LSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred ccceeeeeeecCCCCeEEeec
Confidence 112347899999 6676653
No 128
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=96.20 E-value=1.8 Score=44.37 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=44.6
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....++...|+-||..||+-.- + ..+-+++..++.+..+-.++.. +..+.|+.+|.+|+..
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~--------~--G~~riw~~~G~l~~tl~~HkgP-----I~slKWnk~G~yilS~ 294 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSE--------D--GEARIWNKDGNLISTLGQHKGP-----IFSLKWNKKGTYILSG 294 (524)
T ss_pred ccCCcceEEecCCCCeEEEeec--------C--cEEEEEecCchhhhhhhccCCc-----eEEEEEcCCCCEEEec
Confidence 3346889999999999999763 2 4666667877766666544432 6789999888887763
No 129
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.15 E-value=1.7 Score=43.53 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=29.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
.-..|.|-|+++.|+|.- -....|+.+++++|+.+.+
T Consensus 26 ~gEgP~w~~~~~~L~w~D---------I~~~~i~r~~~~~g~~~~~ 62 (307)
T COG3386 26 LGEGPVWDPDRGALLWVD---------ILGGRIHRLDPETGKKRVF 62 (307)
T ss_pred cccCccCcCCCCEEEEEe---------CCCCeEEEecCCcCceEEE
Confidence 356899999999998863 2458999999998876655
No 130
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=96.11 E-value=0.0057 Score=62.50 Aligned_cols=100 Identities=18% Similarity=0.196 Sum_probs=59.1
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC-chhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~-~~~q~la~~GY~Vl 559 (607)
..+.++++- +|.+|+|+|.+|.+ ++ |.|+||... |...+..-.+ .+..+|+.+|+++|
T Consensus 164 ~i~~v~iP~-eg~~I~g~LhlP~~---~~--p~P~VIv~g---------------GlDs~qeD~~~l~~~~l~~rGiA~L 222 (411)
T PF06500_consen 164 PIEEVEIPF-EGKTIPGYLHLPSG---EK--PYPTVIVCG---------------GLDSLQEDLYRLFRDYLAPRGIAML 222 (411)
T ss_dssp EEEEEEEEE-TTCEEEEEEEESSS---SS---EEEEEEE-----------------TTS-GGGGHHHHHCCCHHCT-EEE
T ss_pred CcEEEEEee-CCcEEEEEEEcCCC---CC--CCCEEEEeC---------------CcchhHHHHHHHHHHHHHhCCCEEE
Confidence 568888875 55999999999983 23 559999763 2232211111 12347899999999
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
. ..+|..|+-. .....++--.=..+.++||.+..+||.++|.
T Consensus 223 t-vDmPG~G~s~--~~~l~~D~~~l~~aVLd~L~~~p~VD~~RV~ 264 (411)
T PF06500_consen 223 T-VDMPGQGESP--KWPLTQDSSRLHQAVLDYLASRPWVDHTRVG 264 (411)
T ss_dssp E-E--TTSGGGT--TT-S-S-CCHHHHHHHHHHHHSTTEEEEEEE
T ss_pred E-EccCCCcccc--cCCCCcCHHHHHHHHHHHHhcCCccChhheE
Confidence 8 7777777421 1111110000124668999999999999874
No 131
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=96.11 E-value=0.01 Score=56.29 Aligned_cols=89 Identities=8% Similarity=-0.025 Sum_probs=51.0
Q ss_pred EEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCCchh
Q 007338 497 ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWSNWF 576 (607)
Q Consensus 497 g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~ 576 (607)
++||+|+++. +++ |+||+.|+.. +....+.. .+...+++...||+|+. |+.+..+... ....
T Consensus 1 ~~ly~P~~~~--~~~--P~vv~lHG~~-----------~~~~~~~~-~~~~~~~a~~~g~~Vv~-Pd~~g~~~~~-~~~~ 62 (212)
T TIGR01840 1 MYVYVPAGLT--GPR--ALVLALHGCG-----------QTASAYVI-DWGWKAAADRYGFVLVA-PEQTSYNSSN-NCWD 62 (212)
T ss_pred CEEEcCCCCC--CCC--CEEEEeCCCC-----------CCHHHHhh-hcChHHHHHhCCeEEEe-cCCcCccccC-CCCC
Confidence 4799999864 334 9999988641 01111110 01123555668999998 5543322111 1111
Q ss_pred h--------HHHHhhcHHHHHHHHHHhcccccccc
Q 007338 577 Q--------VQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 577 ~--------~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
| ......++...+++|.++.-+|.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i 97 (212)
T TIGR01840 63 WFFTHHRARGTGEVESLHQLIDAVKANYSIDPNRV 97 (212)
T ss_pred CCCccccCCCCccHHHHHHHHHHHHHhcCcChhhe
Confidence 1 12345677888999998877887764
No 132
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=96.06 E-value=0.11 Score=52.96 Aligned_cols=79 Identities=11% Similarity=0.044 Sum_probs=46.5
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
-|+|-++.+ ..+-.++..+. ...+...+||.+|..+.-.+ ....|-++|+++|+..+-. ..++
T Consensus 238 ~vklW~vy~--~~~~lrtf~gH--~k~Vrd~~~s~~g~~fLS~s----------fD~~lKlwDtETG~~~~~f--~~~~- 300 (503)
T KOG0282|consen 238 LVKLWNVYD--DRRCLRTFKGH--RKPVRDASFNNCGTSFLSAS----------FDRFLKLWDTETGQVLSRF--HLDK- 300 (503)
T ss_pred eEEEEEEec--Ccceehhhhcc--hhhhhhhhccccCCeeeeee----------cceeeeeeccccceEEEEE--ecCC-
Confidence 356677763 22223333222 22589999999999865443 2357778899999764332 2211
Q ss_pred cccccceEEecCCeEEEE
Q 007338 86 NAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~ 103 (607)
....+.+.||+.-+|+
T Consensus 301 --~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 301 --VPTCVKFHPDNQNIFL 316 (503)
T ss_pred --CceeeecCCCCCcEEE
Confidence 1446677888754444
No 133
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=96.02 E-value=0.66 Score=46.46 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=23.1
Q ss_pred EEEeC-CCCeeecC-CC-CceeeeeeCCCCceEEEEEccC
Q 007338 160 VLGSL-DGTAKDFG-TP-AVYTAVEPSPDQKYVLITSMHR 196 (607)
Q Consensus 160 ~~~~~-~g~~~~lt-~~-~~~~~~~~SpDg~~i~~~~~~~ 196 (607)
+.+|+ .|+..... .. .++..++|.|-+++|+..+..+
T Consensus 148 ~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 148 RLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred EEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 34455 56544432 22 3567889999889888776554
No 134
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.00 E-value=1.9 Score=43.04 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=25.5
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
..+.+|.|||++++.... | ...+-++|++.++.-.
T Consensus 98 ~~~~ls~dgk~~~V~N~T-P----------a~SVtVVDl~~~kvv~ 132 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFT-P----------ATSVTVVDLAAKKVVG 132 (342)
T ss_dssp GGEEE-TTSSEEEEEEES-S----------SEEEEEEETTTTEEEE
T ss_pred cceEEccCCcEEEEEccC-C----------CCeEEEEECCCCceee
Confidence 467999999999988532 2 2478899999876644
No 135
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.88 E-value=0.46 Score=45.92 Aligned_cols=34 Identities=18% Similarity=0.281 Sum_probs=25.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (607)
....++|||||++|+-.+. + .-|=+|+--+|+.+
T Consensus 215 h~EcA~FSPDgqyLvsgSv--------D--GFiEVWny~~GKlr 248 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSGSV--------D--GFIEVWNYTTGKLR 248 (508)
T ss_pred chhheeeCCCCceEeeccc--------c--ceeeeehhccchhh
Confidence 5788999999999877653 3 34556677788875
No 136
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=95.82 E-value=0.1 Score=54.85 Aligned_cols=43 Identities=19% Similarity=0.460 Sum_probs=31.6
Q ss_pred CCCCCcccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 27 YPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 27 ~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
+..+..+.+..|.| |-.+||.... ++.-+||.+...++.....
T Consensus 624 l~Ngt~vtDl~WdPFD~~rLAVa~d--------dg~i~lWr~~a~gl~e~~~ 667 (1012)
T KOG1445|consen 624 LFNGTLVTDLHWDPFDDERLAVATD--------DGQINLWRLTANGLPENEM 667 (1012)
T ss_pred cccCceeeecccCCCChHHeeeccc--------CceEEEEEeccCCCCcccC
Confidence 34455688899999 8889988764 6788899988776654333
No 137
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.21 Score=52.34 Aligned_cols=101 Identities=21% Similarity=0.198 Sum_probs=65.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecC-CeEEEEEecCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNN-STLLIFTIPSSR 109 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~~~~~~~ 109 (607)
.+-..+|++||+++|--.+ .+.++++|..+-++ ..++.+.. -+..++|.|= ..+|+...
T Consensus 303 eVCgLkws~d~~~lASGgn----------DN~~~Iwd~~~~~p~~~~~~H~a-----AVKA~awcP~q~~lLAsGG---- 363 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGN----------DNVVFIWDGLSPEPKFTFTEHTA-----AVKALAWCPWQSGLLATGG---- 363 (484)
T ss_pred eeeeeEECCCCCeeccCCC----------ccceEeccCCCccccEEEeccce-----eeeEeeeCCCccCceEEcC----
Confidence 4778999999999876532 46778888854433 44543332 2678999997 45766520
Q ss_pred CCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCc
Q 007338 110 RDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQK 187 (607)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~ 187 (607)
|. ....|...|. +|+ ...+-....+..+.||+..+
T Consensus 364 --------------------Gs-----------------------~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 364 --------------------GS-----------------------ADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK 400 (484)
T ss_pred --------------------CC-----------------------cccEEEEEEcCCCcEecccccCCceeeEEEcCCCC
Confidence 11 1134445555 554 33444556778999999999
Q ss_pred eEEEEEc
Q 007338 188 YVLITSM 194 (607)
Q Consensus 188 ~i~~~~~ 194 (607)
.|+.+..
T Consensus 401 Ei~sthG 407 (484)
T KOG0305|consen 401 ELLSTHG 407 (484)
T ss_pred EEEEecC
Confidence 9988754
No 138
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.80 E-value=2 Score=42.40 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=47.5
Q ss_pred CCCeeeeecCCCC-CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccccccc--ceEE
Q 007338 18 LGPEKEVHGYPDG-AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFG--SFVW 94 (607)
Q Consensus 18 ~g~~~~lt~~~~~-~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~--~~~W 94 (607)
+|+..+...-+.+ -.+....|||||++|+-+.+. - ..+..-|-++|++. ..+++-..+..+ ++ .+.|
T Consensus 37 ~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd-~----~~g~G~IgVyd~~~-~~~ri~E~~s~G----IGPHel~l 106 (305)
T PF07433_consen 37 TGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTEND-Y----ETGRGVIGVYDAAR-GYRRIGEFPSHG----IGPHELLL 106 (305)
T ss_pred CCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccc-c----CCCcEEEEEEECcC-CcEEEeEecCCC----cChhhEEE
Confidence 5555543322333 246789999999987655442 1 25678899999983 334443333322 33 7889
Q ss_pred ecCCeEEEEE
Q 007338 95 VNNSTLLIFT 104 (607)
Q Consensus 95 spd~~~l~~~ 104 (607)
.||++.|++.
T Consensus 107 ~pDG~tLvVA 116 (305)
T PF07433_consen 107 MPDGETLVVA 116 (305)
T ss_pred cCCCCEEEEE
Confidence 9998655554
No 139
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.76 E-value=4.9 Score=46.37 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=21.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~ 71 (607)
.+....|+|||++||.... + ..|.+|++.+
T Consensus 485 ~V~~i~fs~dg~~latgg~--------D--~~I~iwd~~~ 514 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGV--------N--KKIKIFECES 514 (793)
T ss_pred cEEEEEECCCCCEEEEEeC--------C--CEEEEEECCc
Confidence 4788999999998876543 2 4566667643
No 140
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=95.74 E-value=0.055 Score=53.56 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=42.0
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHH-hccCeEE
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIF-LARRFAV 558 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~l-a~~GY~V 558 (607)
+.+..+|.+. -|.++...||+|+++.. ++ .|+|++.|+.. +....|.. ....+.| +..||+|
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~~-~~--~P~vvllHG~~-----------~~~~~~~~--~~~~~~la~~~g~~V 75 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAAA-GP--VPVLWYLSGLT-----------CTHENFMI--KAGAQRFAAEHGLAL 75 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCccC-CC--CCEEEEccCCC-----------CCccHHHh--hhHHHHHHhhcCcEE
Confidence 5667777776 56789999999998654 33 49999987531 11111110 0113344 4579999
Q ss_pred EeCCCC
Q 007338 559 LAGPSI 564 (607)
Q Consensus 559 l~~~~~ 564 (607)
+. |+.
T Consensus 76 v~-Pd~ 80 (275)
T TIGR02821 76 VA-PDT 80 (275)
T ss_pred EE-eCC
Confidence 99 554
No 141
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.67 E-value=2.3 Score=50.34 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=25.8
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
..++++|||++|+++... ...|.++|++++..+.+
T Consensus 743 ~GIavspdG~~LYVADs~------------n~~Irv~D~~tg~~~~~ 777 (1057)
T PLN02919 743 SGISLSPDLKELYIADSE------------SSSIRALDLKTGGSRLL 777 (1057)
T ss_pred cEEEEeCCCCEEEEEECC------------CCeEEEEECCCCcEEEE
Confidence 468999999998887432 24789999987765544
No 142
>PLN02442 S-formylglutathione hydrolase
Probab=95.49 E-value=0.085 Score=52.45 Aligned_cols=68 Identities=24% Similarity=0.364 Sum_probs=43.7
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.+++.|. -|.++...+|+|+. .++++| |+|++.|+.. +....|.... ...++++.+||+|+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~-~~~~~~--Pvv~~lHG~~-----------~~~~~~~~~~-~~~~~~~~~g~~Vv 81 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA-SDSGKV--PVLYWLSGLT-----------CTDENFIQKS-GAQRAAAARGIALV 81 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc-ccCCCC--CEEEEecCCC-----------cChHHHHHhh-hHHHHHhhcCeEEE
Confidence 5667777774 67899999999994 444544 9999988531 1111221111 11357778899999
Q ss_pred eCCCC
Q 007338 560 AGPSI 564 (607)
Q Consensus 560 ~~~~~ 564 (607)
. |+.
T Consensus 82 ~-pd~ 85 (283)
T PLN02442 82 A-PDT 85 (283)
T ss_pred e-cCC
Confidence 9 554
No 143
>PTZ00420 coronin; Provisional
Probab=95.46 E-value=5 Score=43.83 Aligned_cols=33 Identities=15% Similarity=0.368 Sum_probs=24.2
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.+..++|+|++..+++++.. ...|.+||+.+++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~------------DgtIrIWDl~tg~ 159 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGF------------DSFVNIWDIENEK 159 (568)
T ss_pred cEEEEEECCCCCeEEEEEeC------------CCeEEEEECCCCc
Confidence 56789999999888766432 1368899988763
No 144
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=95.46 E-value=0.099 Score=51.69 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=53.4
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
+.+.|.. +|.++.|+++.|.+ +.+ |.||++|++.. .+-+.+ .........|+++||.|+. +
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~--~~~----~~vv~i~gg~~--------~~~g~~---~~~~~la~~l~~~G~~v~~-~ 63 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGA--SHT----TGVLIVVGGPQ--------YRVGSH---RQFVLLARRLAEAGFPVLR-F 63 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCC--CCC----CeEEEEeCCcc--------ccCCch---hHHHHHHHHHHHCCCEEEE-e
Confidence 4677864 67999999999974 222 33444342210 000000 0001124688999999998 6
Q ss_pred CCceeccCCCCch-hhHHHHhhcHHHHHHHHHHh
Q 007338 563 SIPIIGEGLWSNW-FQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 563 ~~~~~g~g~~~~~-~~~~~~~~~~~~~v~~~~~~ 595 (607)
+.+ |.|...+. .-.+....|+.+++++|.++
T Consensus 64 Dl~--G~G~S~~~~~~~~~~~~d~~~~~~~l~~~ 95 (274)
T TIGR03100 64 DYR--GMGDSEGENLGFEGIDADIAAAIDAFREA 95 (274)
T ss_pred CCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 664 44433211 12245678899999999765
No 145
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.30 E-value=0.3 Score=50.02 Aligned_cols=138 Identities=11% Similarity=0.109 Sum_probs=88.4
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDIC 84 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~ 84 (607)
-||-||.++ .+-...+++ .+.+..++-..+||-.+.+.-+.. ++..+.+||+.+..+..-. .+ .
T Consensus 143 Gdiiih~~~---t~~~tt~f~-~~sgqsvRll~ys~skr~lL~~as---------d~G~VtlwDv~g~sp~~~~--~~-~ 206 (673)
T KOG4378|consen 143 GDIIIHGTK---TKQKTTTFT-IDSGQSVRLLRYSPSKRFLLSIAS---------DKGAVTLWDVQGMSPIFHA--SE-A 206 (673)
T ss_pred CcEEEEecc---cCcccccee-cCCCCeEEEeecccccceeeEeec---------cCCeEEEEeccCCCcccch--hh-h
Confidence 478899998 244555555 455656778999999999887763 4567888899876553221 11 1
Q ss_pred ccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC
Q 007338 85 LNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL 164 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 164 (607)
..+.-.++.|+|....||.++ | + ...|+++|.
T Consensus 207 HsAP~~gicfspsne~l~vsV------------------------G---------------~---------Dkki~~yD~ 238 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSV------------------------G---------------Y---------DKKINIYDI 238 (673)
T ss_pred ccCCcCcceecCCccceEEEe------------------------c---------------c---------cceEEEeec
Confidence 122245788999877666642 1 0 124555565
Q ss_pred C-C-CeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 165 D-G-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 165 ~-g-~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
. . ....|+.......++|+|+|-+|+.-.. ..+|+.||+.+.
T Consensus 239 ~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s-------------~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 239 RSQASTDRLTYSHPLSTVAFSECGTYLCAGNS-------------KGELIAYDMRST 282 (673)
T ss_pred ccccccceeeecCCcceeeecCCceEEEeecC-------------CceEEEEecccC
Confidence 2 2 2344554445678999999988877643 237888888754
No 146
>PRK10162 acetyl esterase; Provisional
Probab=95.27 E-value=0.068 Score=54.12 Aligned_cols=89 Identities=11% Similarity=0.124 Sum_probs=55.6
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~Vl 559 (607)
..+.+++...+| +|..++|.|.. + +.|+|||+|+|-| +.|+...+ ......||. .||.|+
T Consensus 56 ~~~~~~i~~~~g-~i~~~~y~P~~----~--~~p~vv~~HGGg~--------~~g~~~~~----~~~~~~la~~~g~~Vv 116 (318)
T PRK10162 56 ATRAYMVPTPYG-QVETRLYYPQP----D--SQATLFYLHGGGF--------ILGNLDTH----DRIMRLLASYSGCTVI 116 (318)
T ss_pred eEEEEEEecCCC-ceEEEEECCCC----C--CCCEEEEEeCCcc--------cCCCchhh----hHHHHHHHHHcCCEEE
Confidence 467788888888 69999999952 1 2499999986521 22222211 112456776 599999
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
. ++.+ ..+...+ ...++|+.++++||.+.
T Consensus 117 ~-vdYr-----lape~~~-p~~~~D~~~a~~~l~~~ 145 (318)
T PRK10162 117 G-IDYT-----LSPEARF-PQAIEEIVAVCCYFHQH 145 (318)
T ss_pred E-ecCC-----CCCCCCC-CCcHHHHHHHHHHHHHh
Confidence 8 4422 1121112 23478999999999764
No 147
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=95.24 E-value=0.33 Score=50.26 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=33.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~ 103 (607)
.+...+|||||.-|.-... ++ .|-++...|.=.-.+..... .+-..+|.|+ ..++|.
T Consensus 106 A~~~gRW~~dGtgLlt~GE--------DG--~iKiWSrsGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c 163 (737)
T KOG1524|consen 106 AISSGRWSPDGAGLLTAGE--------DG--VIKIWSRSGMLRSTVVQNEE-----SIRCARWAPNSNSIVFC 163 (737)
T ss_pred hhhhcccCCCCceeeeecC--------Cc--eEEEEeccchHHHHHhhcCc-----eeEEEEECCCCCceEEe
Confidence 4677899999988755431 34 45555555443223322222 1557899999 456665
No 148
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=95.19 E-value=0.055 Score=35.41 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=23.2
Q ss_pred eeecCcccceeeEcCCCcEEEEEEecc-ccceEEEE
Q 007338 294 LHKLDLRFRSVSWCDDSLALVNETWYK-TSQTRTWL 328 (607)
Q Consensus 294 l~~~~~~~~~~~ws~Dg~~l~~~~~~~-~~~~~l~~ 328 (607)
++........+.|||||+.|+|..... .+..+||+
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 444555677899999999998887544 25567774
No 149
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.15 E-value=1 Score=42.30 Aligned_cols=70 Identities=24% Similarity=0.282 Sum_probs=43.8
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
...++.+.+.+. .+....|--..+-|+-++. ...+-+||..+|+..+-..... .+.++..++|
T Consensus 133 ~App~E~~ghtg--~Ir~v~wc~eD~~iLSSad----------d~tVRLWD~rTgt~v~sL~~~s-----~VtSlEvs~d 195 (334)
T KOG0278|consen 133 KAPPKEISGHTG--GIRTVLWCHEDKCILSSAD----------DKTVRLWDHRTGTEVQSLEFNS-----PVTSLEVSQD 195 (334)
T ss_pred CCCchhhcCCCC--cceeEEEeccCceEEeecc----------CCceEEEEeccCcEEEEEecCC-----CCcceeeccC
Confidence 334444544443 4777788766666554421 2466777999998754433332 2678899999
Q ss_pred CeEEEEE
Q 007338 98 STLLIFT 104 (607)
Q Consensus 98 ~~~l~~~ 104 (607)
|+++..+
T Consensus 196 G~ilTia 202 (334)
T KOG0278|consen 196 GRILTIA 202 (334)
T ss_pred CCEEEEe
Confidence 9987764
No 150
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.15 E-value=0.89 Score=45.44 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=33.5
Q ss_pred cceEEEEeCCCCeeecCCCC--ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 156 TAQLVLGSLDGTAKDFGTPA--VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 156 ~~~l~~~~~~g~~~~lt~~~--~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
...||+++..|..+++.... .-..++||||++.++++-.. ...|+.++++
T Consensus 142 ~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~------------~~~i~r~~~d 193 (307)
T COG3386 142 TGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP------------ANRIHRYDLD 193 (307)
T ss_pred cceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC------------CCeEEEEecC
Confidence 35899999766555443332 23589999999988877432 2367777765
No 151
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=95.07 E-value=1.2 Score=45.60 Aligned_cols=115 Identities=16% Similarity=0.177 Sum_probs=69.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC-CceeecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET-GEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~-g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
.++..+|.|---+|+.+.. ....|++|++-+ +...+.... .+..+....|+++++.++...-+
T Consensus 216 gvsai~~fp~~~hLlLS~g---------mD~~vklW~vy~~~~~lrtf~g----H~k~Vrd~~~s~~g~~fLS~sfD--- 279 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGG---------MDGLVKLWNVYDDRRCLRTFKG----HRKPVRDASFNNCGTSFLSASFD--- 279 (503)
T ss_pred ccchhhhccceeeEEEecC---------CCceEEEEEEecCcceehhhhc----chhhhhhhhccccCCeeeeeecc---
Confidence 4889999996556655543 236788888865 332222211 22337789999998876654210
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCCCceeeeeeCCCCce
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKY 188 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~~ 188 (607)
.-|-.+|+ +|+ ...+.......-+.+.||+..
T Consensus 280 ----------------------------------------------~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n 313 (503)
T KOG0282|consen 280 ----------------------------------------------RFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQN 313 (503)
T ss_pred ----------------------------------------------eeeeeeccccceEEEEEecCCCceeeecCCCCCc
Confidence 01222344 453 334444444456789999978
Q ss_pred EEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 189 VLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 189 i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
++++... ..+|..||+.+++
T Consensus 314 ~fl~G~s------------d~ki~~wDiRs~k 333 (503)
T KOG0282|consen 314 IFLVGGS------------DKKIRQWDIRSGK 333 (503)
T ss_pred EEEEecC------------CCcEEEEeccchH
Confidence 8877643 2478889998775
No 152
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.06 E-value=0.44 Score=50.67 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=31.0
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEec
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (607)
..+..+..||||+||++.+.. ..|++|++++.+-+.|.
T Consensus 476 ~~I~~l~~SsdG~yiaa~~t~-------------g~I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 476 PSISRLVVSSDGNYIAAISTR-------------GQIFVYNLETLESHLLK 513 (691)
T ss_pred CcceeEEEcCCCCEEEEEecc-------------ceEEEEEcccceeecch
Confidence 356788999999999998742 37999999999888765
No 153
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=94.99 E-value=0.79 Score=43.46 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=45.1
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC-------CCce-eecccCCCccccccc
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-------TGEA-KPLFESPDICLNAVF 89 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-------~g~~-~~lt~~~~~~~~~~~ 89 (607)
+|+..-.- .....+...-||++|+.++++...-. .....|.++|+. +.++ .++..... .+
T Consensus 83 tGk~la~~--k~~~~Vk~~~F~~~gn~~l~~tD~~m-----g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-----ki 150 (327)
T KOG0643|consen 83 TGKQLATW--KTNSPVKRVDFSFGGNLILASTDKQM-----GYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-----KI 150 (327)
T ss_pred CCcEEEEe--ecCCeeEEEeeccCCcEEEEEehhhc-----CcceEEEEEEccCChhhhcccCceEEecCCcc-----ce
Confidence 55443333 33335788899999999999875421 345678888887 3332 23321111 14
Q ss_pred cceEEecCCeEEEE
Q 007338 90 GSFVWVNNSTLLIF 103 (607)
Q Consensus 90 ~~~~Wspd~~~l~~ 103 (607)
....|+|-++.|+.
T Consensus 151 t~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 151 TSALWGPLGETIIA 164 (327)
T ss_pred eeeeecccCCEEEE
Confidence 56788888776665
No 154
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.97 E-value=11 Score=44.90 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=36.7
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCC--cccccccCCCCcceeecCCCc
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP--VCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~wspdg~~ 255 (607)
..++++|++..|+++... ...|++++..++.+..+.......... ......-..+..+.++|||+.
T Consensus 686 ~gVa~dp~~g~LyVad~~------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~ 753 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAG------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKE 753 (1057)
T ss_pred eEEEEecCCCeEEEEECC------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCE
Confidence 368899977777776432 237899999888776553211000000 000001123456899999973
No 155
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.97 E-value=0.057 Score=52.15 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=65.1
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCC
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGP 562 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~ 562 (607)
+..+|. .+|...++|||.|++.+.++ |+||..|+.. +.++++-|+ . .+..+....||+|+.|-
T Consensus 36 ~~~s~~-~~g~~r~y~l~vP~g~~~~a----pLvv~LHG~~---~sgag~~~~-------s--g~d~lAd~~gFlV~yPd 98 (312)
T COG3509 36 SVASFD-VNGLKRSYRLYVPPGLPSGA----PLVVVLHGSG---GSGAGQLHG-------T--GWDALADREGFLVAYPD 98 (312)
T ss_pred Cccccc-cCCCccceEEEcCCCCCCCC----CEEEEEecCC---CChHHhhcc-------c--chhhhhcccCcEEECcC
Confidence 445665 47889999999999988654 8888888642 111222221 1 12356666799999821
Q ss_pred CCcee----ccCCC--Cch-hhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 563 SIPII----GEGLW--SNW-FQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 563 ~~~~~----g~g~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
+.+-. +-+.. +.+ .-....+..+.+.|+.|+.+.=||+.||.
T Consensus 99 g~~~~wn~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVy 147 (312)
T COG3509 99 GYDRAWNANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVY 147 (312)
T ss_pred ccccccCCCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEE
Confidence 21100 01111 111 23346677889999999999999998873
No 156
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=94.94 E-value=0.18 Score=46.17 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=75.4
Q ss_pred CCCcccCCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh
Q 007338 473 PYPTLASLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL 552 (607)
Q Consensus 473 ~~~~~~~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la 552 (607)
+.++..+++-|.++.++.|-.++++|+++-.+ ..|++++.|+. .|+- ++.- ..-.-+|.
T Consensus 45 ptP~~~n~pye~i~l~T~D~vtL~a~~~~~E~-------S~pTlLyfh~N-----------AGNm-Ghr~--~i~~~fy~ 103 (300)
T KOG4391|consen 45 PTPKEFNMPYERIELRTRDKVTLDAYLMLSES-------SRPTLLYFHAN-----------AGNM-GHRL--PIARVFYV 103 (300)
T ss_pred CCccccCCCceEEEEEcCcceeEeeeeecccC-------CCceEEEEccC-----------CCcc-cchh--hHHHHHHH
Confidence 44555667889999999999999999999322 23999999852 1211 1110 11124788
Q ss_pred ccCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhcccccccc
Q 007338 553 ARRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 553 ~~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
+.+--||. .+ .+|||..-+....+-++-|..+++++|-.+-..|-..+
T Consensus 104 ~l~mnv~i-vs--YRGYG~S~GspsE~GL~lDs~avldyl~t~~~~dktki 151 (300)
T KOG4391|consen 104 NLKMNVLI-VS--YRGYGKSEGSPSEEGLKLDSEAVLDYLMTRPDLDKTKI 151 (300)
T ss_pred HcCceEEE-EE--eeccccCCCCccccceeccHHHHHHHHhcCccCCcceE
Confidence 88988887 32 36788776666667889999999999999888775543
No 157
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.84 E-value=4.2 Score=39.54 Aligned_cols=33 Identities=9% Similarity=0.299 Sum_probs=24.8
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
..+..+++.|.|.+|++.+.. ..+.+||+++-+
T Consensus 217 ~~vrsiSfHPsGefllvgTdH-------------p~~rlYdv~T~Q 249 (430)
T KOG0640|consen 217 EPVRSISFHPSGEFLLVGTDH-------------PTLRLYDVNTYQ 249 (430)
T ss_pred ceeeeEeecCCCceEEEecCC-------------CceeEEecccee
Confidence 356789999999999988642 257778887653
No 158
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=94.82 E-value=0.045 Score=42.48 Aligned_cols=51 Identities=16% Similarity=0.152 Sum_probs=33.4
Q ss_pred CceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCC
Q 007338 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (607)
Q Consensus 492 G~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (607)
|.+|....++|++- +..+|+.+|+- ++ +. ..+-...+.|+++||+|+. .+.
T Consensus 1 G~~L~~~~w~p~~~------~k~~v~i~HG~----~e---------h~--~ry~~~a~~L~~~G~~V~~-~D~ 51 (79)
T PF12146_consen 1 GTKLFYRRWKPENP------PKAVVVIVHGF----GE---------HS--GRYAHLAEFLAEQGYAVFA-YDH 51 (79)
T ss_pred CcEEEEEEecCCCC------CCEEEEEeCCc----HH---------HH--HHHHHHHHHHHhCCCEEEE-ECC
Confidence 67899999999852 23788877742 10 11 1111236899999999997 544
No 159
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=94.82 E-value=0.061 Score=54.33 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=58.4
Q ss_pred ECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCcee
Q 007338 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (607)
Q Consensus 488 ~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~ 567 (607)
...++..+...+|.|.. .+ ..+.|+|||+|+| +.++++.... ......+++..||.|+. ++
T Consensus 57 ~~~~~~~~~~~~y~p~~-~~--~~~~p~vly~HGG--------g~~~g~~~~~---~~~~~~~~~~~g~~vv~-vd---- 117 (312)
T COG0657 57 AGPSGDGVPVRVYRPDR-KA--AATAPVVLYLHGG--------GWVLGSLRTH---DALVARLAAAAGAVVVS-VD---- 117 (312)
T ss_pred cCCCCCceeEEEECCCC-CC--CCCCcEEEEEeCC--------eeeecChhhh---HHHHHHHHHHcCCEEEe-cC----
Confidence 44566678899999921 22 2245999999975 2233333221 01224688889999998 43
Q ss_pred ccCCCCchhhHHHHhhcHHHHHHHHHHhcc---cccccc
Q 007338 568 GEGLWSNWFQVQRLLLKKLFDVEWLIQAEL---LLEDTL 603 (607)
Q Consensus 568 g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~ 603 (607)
|-.-+...| ...+.|+.+++.||.+..- +|.+++
T Consensus 118 -YrlaPe~~~-p~~~~d~~~a~~~l~~~~~~~g~dp~~i 154 (312)
T COG0657 118 -YRLAPEHPF-PAALEDAYAAYRWLRANAAELGIDPSRI 154 (312)
T ss_pred -CCCCCCCCC-CchHHHHHHHHHHHHhhhHhhCCCccce
Confidence 222222234 3446779999999998853 366654
No 160
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.82 E-value=0.45 Score=46.93 Aligned_cols=71 Identities=18% Similarity=0.365 Sum_probs=42.5
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEE-EEECCCCceeecccCCCccccccccceEEec
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVW-IADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~-v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
.|.-.+|.- ...+.++..+|||||.+|.- .+. +....|| .-..-+.+ +.++ ..+. +....|+|
T Consensus 227 tg~~~pL~~-~glgg~slLkwSPdgd~lfa-At~-------davfrlw~e~q~wt~e-rw~l--gsgr----vqtacWsp 290 (445)
T KOG2139|consen 227 TGQKIPLIP-KGLGGFSLLKWSPDGDVLFA-ATC-------DAVFRLWQENQSWTKE-RWIL--GSGR----VQTACWSP 290 (445)
T ss_pred CCCcccccc-cCCCceeeEEEcCCCCEEEE-ecc-------cceeeeehhcccceec-ceec--cCCc----eeeeeecC
Confidence 565666652 13336889999999998644 443 5566777 22222333 3333 2222 56788999
Q ss_pred CCeEEEEE
Q 007338 97 NSTLLIFT 104 (607)
Q Consensus 97 d~~~l~~~ 104 (607)
+|+.+.++
T Consensus 291 cGsfLLf~ 298 (445)
T KOG2139|consen 291 CGSFLLFA 298 (445)
T ss_pred CCCEEEEE
Confidence 98865554
No 161
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=94.63 E-value=0.15 Score=52.34 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=55.3
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.+...+.++||.+|.+....|.+-+ +.|+||++|+- ++...+. .....+.|+++||.|+.
T Consensus 61 ~~~~~~~~~~g~~l~~~~~~p~~~~-----~~~~iv~lHG~------------~~~~~~~--~~~~~~~l~~~g~~v~~- 120 (349)
T PLN02385 61 TEESYEVNSRGVEIFSKSWLPENSR-----PKAAVCFCHGY------------GDTCTFF--FEGIARKIASSGYGVFA- 120 (349)
T ss_pred eeeeeEEcCCCCEEEEEEEecCCCC-----CCeEEEEECCC------------CCccchH--HHHHHHHHHhCCCEEEE-
Confidence 3444566789999999999997421 33888988742 1111110 01124578889999998
Q ss_pred CCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHh
Q 007338 562 PSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 562 ~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
++.+-+ |.. ....-...+++|+.+.+++|..+
T Consensus 121 ~D~~G~--G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~ 156 (349)
T PLN02385 121 MDYPGF--GLSEGLHGYIPSFDDLVDDVIEHYSKIKGN 156 (349)
T ss_pred ecCCCC--CCCCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 666443 332 11112256677888777777543
No 162
>PHA02857 monoglyceride lipase; Provisional
Probab=94.59 E-value=0.14 Score=50.55 Aligned_cols=85 Identities=9% Similarity=-0.067 Sum_probs=51.1
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCce
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~ 566 (607)
|.++||..|.+.++.|.. . +.|+|++.||-. .....| ....+.|+++||.|+. .+.|-
T Consensus 5 ~~~~~g~~l~~~~~~~~~----~--~~~~v~llHG~~-----------~~~~~~----~~~~~~l~~~g~~via-~D~~G 62 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT----Y--PKALVFISHGAG-----------EHSGRY----EELAENISSLGILVFS-HDHIG 62 (276)
T ss_pred eecCCCCEEEEEeccCCC----C--CCEEEEEeCCCc-----------cccchH----HHHHHHHHhCCCEEEE-ccCCC
Confidence 557799999999999952 1 227888777420 011111 1235789999999998 66644
Q ss_pred ecc--CCCC-chhhHHHHhhcHHHHHHHHHH
Q 007338 567 IGE--GLWS-NWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 567 ~g~--g~~~-~~~~~~~~~~~~~~~v~~~~~ 594 (607)
+|. +... -+.| ...++|++..++.+.+
T Consensus 63 ~G~S~~~~~~~~~~-~~~~~d~~~~l~~~~~ 92 (276)
T PHA02857 63 HGRSNGEKMMIDDF-GVYVRDVVQHVVTIKS 92 (276)
T ss_pred CCCCCCccCCcCCH-HHHHHHHHHHHHHHHh
Confidence 431 1111 1233 3446778777777654
No 163
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=94.43 E-value=0.34 Score=47.13 Aligned_cols=109 Identities=12% Similarity=0.198 Sum_probs=69.5
Q ss_pred eeeecCCCCC-cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCC-e
Q 007338 22 KEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS-T 99 (607)
Q Consensus 22 ~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~-~ 99 (607)
|+.|.+++-. .+...+||+|..++|-... ..-+.||++|+..-+...+..-.+ .+..+.|.|.. +
T Consensus 309 kp~tD~pnPk~g~g~lafs~Ds~y~aTrnd--------~~PnalW~Wdlq~l~l~avLiQk~-----piraf~WdP~~pr 375 (447)
T KOG4497|consen 309 KPPTDFPNPKCGAGKLAFSCDSTYAATRND--------KYPNALWLWDLQNLKLHAVLIQKH-----PIRAFEWDPGRPR 375 (447)
T ss_pred cCCCCCCCcccccceeeecCCceEEeeecC--------CCCceEEEEechhhhhhhhhhhcc-----ceeEEEeCCCCce
Confidence 3445444332 4778999999988765432 455899999998766543322222 16789999984 5
Q ss_pred EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCC-ce
Q 007338 100 LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA-VY 177 (607)
Q Consensus 100 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~-~~ 177 (607)
+++.+ | ..+||...++| -...+..++ .+
T Consensus 376 L~vct-------------------------g-------------------------~srLY~W~psg~~~V~vP~~GF~i 405 (447)
T KOG4497|consen 376 LVVCT-------------------------G-------------------------KSRLYFWAPSGPRVVGVPKKGFNI 405 (447)
T ss_pred EEEEc-------------------------C-------------------------CceEEEEcCCCceEEecCCCCcee
Confidence 65553 1 24566666666 233333334 35
Q ss_pred eeeeeCCCCceEEEEE
Q 007338 178 TAVEPSPDQKYVLITS 193 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~ 193 (607)
..+.|.-+|..|+...
T Consensus 406 ~~l~W~~~g~~i~l~~ 421 (447)
T KOG4497|consen 406 QKLQWLQPGEFIVLCG 421 (447)
T ss_pred eeEEecCCCcEEEEEc
Confidence 6889999999988774
No 164
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.34 E-value=4.2 Score=44.62 Aligned_cols=74 Identities=24% Similarity=0.395 Sum_probs=44.1
Q ss_pred ceEEEEeCCCCeeecCCCCceeeeeeCC-CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCc
Q 007338 157 AQLVLGSLDGTAKDFGTPAVYTAVEPSP-DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPV 235 (607)
Q Consensus 157 ~~l~~~~~~g~~~~lt~~~~~~~~~~Sp-Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~ 235 (607)
.+||...-..-+.-+....+++-++|.| |.+|++--+. ..++.+|++...++-.-+++
T Consensus 392 VRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSL-------------D~KvRiWsI~d~~Vv~W~Dl-------- 450 (712)
T KOG0283|consen 392 VRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSL-------------DGKVRLWSISDKKVVDWNDL-------- 450 (712)
T ss_pred EEeecCCCcceeeEEecCCeeEEEEecccCCCcEeeccc-------------ccceEEeecCcCeeEeehhh--------
Confidence 4555443222244445567888999999 4555554432 24788899887765544331
Q ss_pred ccccccCCCCcceeecCCCce
Q 007338 236 CYNSVREGMRSISWRADKPST 256 (607)
Q Consensus 236 ~~~~~~~~~~~~~wspdg~~~ 256 (607)
..=+..+.++|||++.
T Consensus 451 -----~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 451 -----RDLITAVCYSPDGKGA 466 (712)
T ss_pred -----hhhheeEEeccCCceE
Confidence 1112358999999953
No 165
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=93.97 E-value=6.4 Score=38.17 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=40.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce--eecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....|+|||..+|-.. ...+|++|++-+-.. -.+.-++. .+..+.|..|+..++..
T Consensus 49 eI~~~~F~P~gs~~aSgG----------~Dr~I~LWnv~gdceN~~~lkgHsg-----AVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGG----------SDRAIVLWNVYGDCENFWVLKGHSG-----AVMELHGMRDGSHILSC 108 (338)
T ss_pred eEEEEEECCCCCeEeecC----------CcceEEEEeccccccceeeeccccc-----eeEeeeeccCCCEEEEe
Confidence 578899999999876543 347899999876433 23322222 26688999999888875
No 166
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=93.84 E-value=1.8 Score=42.12 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=44.7
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCcccc
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLN 86 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~ 86 (607)
+.|.|+.. -+-.+.++.... .+...+||+||+.|.-++. ...+-++|+..|.+.+-..+..
T Consensus 47 vvI~D~~T---~~iar~lsaH~~--pi~sl~WS~dgr~LltsS~----------D~si~lwDl~~gs~l~rirf~s---- 107 (405)
T KOG1273|consen 47 VVIYDFDT---FRIARMLSAHVR--PITSLCWSRDGRKLLTSSR----------DWSIKLWDLLKGSPLKRIRFDS---- 107 (405)
T ss_pred EEEEEccc---cchhhhhhcccc--ceeEEEecCCCCEeeeecC----------CceeEEEeccCCCceeEEEccC----
Confidence 56777651 233444543322 5889999999999876653 2577888998887532222222
Q ss_pred ccccceEEecCC
Q 007338 87 AVFGSFVWVNNS 98 (607)
Q Consensus 87 ~~~~~~~Wspd~ 98 (607)
.+-..+|.|-+
T Consensus 108 -pv~~~q~hp~k 118 (405)
T KOG1273|consen 108 -PVWGAQWHPRK 118 (405)
T ss_pred -ccceeeecccc
Confidence 14467888753
No 167
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=93.83 E-value=0.21 Score=54.16 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccC--eEEEeCCCCc--eeccC
Q 007338 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR--FAVLAGPSIP--IIGEG 570 (607)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~G--Y~Vl~~~~~~--~~g~g 570 (607)
+.-.++.|.+..+++ ++|||||+|+|.|.. |+...+ ....|++++ ++|+. .+.+ ..|..
T Consensus 79 l~l~i~~p~~~~~~~--~~pv~v~ihGG~~~~--------g~~~~~------~~~~~~~~~~~~~vv~-~~yRlg~~g~~ 141 (493)
T cd00312 79 LYLNVYTPKNTKPGN--SLPVMVWIHGGGFMF--------GSGSLY------PGDGLAREGDNVIVVS-INYRLGVLGFL 141 (493)
T ss_pred CeEEEEeCCCCCCCC--CCCEEEEEcCCcccc--------CCCCCC------ChHHHHhcCCCEEEEE-ecccccccccc
Confidence 555777888755444 459999999764432 222111 234555553 88887 3321 12222
Q ss_pred CCCc-hhhHHHHhhcHHHHHHHHHHh----cccccccc
Q 007338 571 LWSN-WFQVQRLLLKKLFDVEWLIQA----ELLLEDTL 603 (607)
Q Consensus 571 ~~~~-~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~ 603 (607)
.... ..-+-.-+.|++.|++|+.+. | .|+++|
T Consensus 142 ~~~~~~~~~n~g~~D~~~al~wv~~~i~~fg-gd~~~v 178 (493)
T cd00312 142 STGDIELPGNYGLKDQRLALKWVQDNIAAFG-GDPDSV 178 (493)
T ss_pred cCCCCCCCcchhHHHHHHHHHHHHHHHHHhC-CCcceE
Confidence 1110 011122367899999998765 4 466654
No 168
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=93.74 E-value=17 Score=42.38 Aligned_cols=118 Identities=14% Similarity=0.185 Sum_probs=56.7
Q ss_pred cceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeee-cCcccceeeEcCCCcEEEEEEeccccce
Q 007338 246 SISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHK-LDLRFRSVSWCDDSLALVNETWYKTSQT 324 (607)
Q Consensus 246 ~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~-~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 324 (607)
.++|+-||+. +-+...+.... .+..+.+++. .| +.....+ .++-...++|.|.|..|+.... ..+..
T Consensus 214 ~ISWRGDG~y--FAVss~~~~~~-----~~R~iRVy~R---eG-~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~ 281 (928)
T PF04762_consen 214 RISWRGDGEY--FAVSSVEPETG-----SRRVIRVYSR---EG-ELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRH 281 (928)
T ss_pred EEEECCCCcE--EEEEEEEcCCC-----ceeEEEEECC---Cc-eEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCc
Confidence 4999999983 11222211110 1344555553 22 2221111 2233567899999987776543 22334
Q ss_pred EEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccCcCcEEEEe
Q 007338 325 RTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKENDEQIYILLN 384 (607)
Q Consensus 325 ~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~l~~~ 384 (607)
.+..+.-.|- .... |...... .......+.|+.|+..+++...+ ..+||..
T Consensus 282 ~VvFfErNGL--rhge-F~l~~~~--~~~~v~~l~Wn~ds~iLAv~~~~----~vqLWt~ 332 (928)
T PF04762_consen 282 DVVFFERNGL--RHGE-FTLRFDP--EEEKVIELAWNSDSEILAVWLED----RVQLWTR 332 (928)
T ss_pred EEEEEecCCc--Eeee-EecCCCC--CCceeeEEEECCCCCEEEEEecC----CceEEEe
Confidence 5555554441 1111 1111000 00000128999999988776643 4556643
No 169
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=93.45 E-value=9 Score=38.18 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=39.8
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLF 78 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt 78 (607)
.+|+-++. +.+..+.+.+ .....+.-.++|||++|+-... ...|.+|++++|++. .++
T Consensus 171 svWmw~ip---~~~~~kv~~G--h~~~ct~G~f~pdGKr~~tgy~----------dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 171 SVWMWQIP---SQALCKVMSG--HNSPCTCGEFIPDGKRILTGYD----------DGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred cEEEEECC---CcceeeEecC--CCCCcccccccCCCceEEEEec----------CceEEEEecCCCceeEEec
Confidence 47888875 2344544443 2225788899999999877654 357888999999764 443
No 170
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=93.34 E-value=0.15 Score=48.17 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=51.8
Q ss_pred EEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHh-ccCeEEEeCCCCceec--cCCC
Q 007338 496 TATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFL-ARRFAVLAGPSIPIIG--EGLW 572 (607)
Q Consensus 496 ~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la-~~GY~Vl~~~~~~~~g--~g~~ 572 (607)
...||.|++...+ ++|+||..|+.. +.+..|.... . ++-+| ++||+|+. |.-.... .+-+
T Consensus 2 ~Y~lYvP~~~~~~---~~PLVv~LHG~~-----------~~a~~~~~~s-~-~~~lAd~~Gfivvy-P~~~~~~~~~~cw 64 (220)
T PF10503_consen 2 SYRLYVPPGAPRG---PVPLVVVLHGCG-----------QSAEDFAAGS-G-WNALADREGFIVVY-PEQSRRANPQGCW 64 (220)
T ss_pred cEEEecCCCCCCC---CCCEEEEeCCCC-----------CCHHHHHhhc-C-HHHHhhcCCeEEEc-ccccccCCCCCcc
Confidence 4679999986532 469999988641 1112222111 1 23445 45999998 4322111 1111
Q ss_pred ----CchhhHHHHhhcHHHHHHHHHHhccccccccc
Q 007338 573 ----SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLM 604 (607)
Q Consensus 573 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 604 (607)
............+...|++|+++--+|.+||.
T Consensus 65 ~w~~~~~~~g~~d~~~i~~lv~~v~~~~~iD~~RVy 100 (220)
T PF10503_consen 65 NWFSDDQQRGGGDVAFIAALVDYVAARYNIDPSRVY 100 (220)
T ss_pred cccccccccCccchhhHHHHHHhHhhhcccCCCcee
Confidence 01111123345677889999999999999974
No 171
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=93.03 E-value=0.12 Score=49.04 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccC---C
Q 007338 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEG---L 571 (607)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g---~ 571 (607)
|+++|.+|.+- + |.|+||.+|.- .|.+. ........||++||.|+. |+. ..|.+ .
T Consensus 1 ~~ay~~~P~~~--~---~~~~Vvv~~d~------------~G~~~---~~~~~ad~lA~~Gy~v~~-pD~-f~~~~~~~~ 58 (218)
T PF01738_consen 1 IDAYVARPEGG--G---PRPAVVVIHDI------------FGLNP---NIRDLADRLAEEGYVVLA-PDL-FGGRGAPPS 58 (218)
T ss_dssp EEEEEEEETTS--S---SEEEEEEE-BT------------TBS-H---HHHHHHHHHHHTT-EEEE-E-C-CCCTS--CC
T ss_pred CeEEEEeCCCC--C---CCCEEEEEcCC------------CCCch---HHHHHHHHHHhcCCCEEe-ccc-ccCCCCCcc
Confidence 68999999863 1 34999987731 11110 001125689999999998 553 12333 1
Q ss_pred C--Cchhh--------HHHHhhcHHHHHHHHHHhcccccccc
Q 007338 572 W--SNWFQ--------VQRLLLKKLFDVEWLIQAELLLEDTL 603 (607)
Q Consensus 572 ~--~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~ 603 (607)
. -.... ......++.++|++|.++.-++.+++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~ki 100 (218)
T PF01738_consen 59 DPEEAFAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKI 100 (218)
T ss_dssp CHHCHHHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred chhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcE
Confidence 1 01111 23567788999999999997777665
No 172
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=92.99 E-value=5.2 Score=46.56 Aligned_cols=52 Identities=23% Similarity=0.231 Sum_probs=33.4
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA 69 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~ 69 (607)
+|.+....++....+..-+..... .+...+||||+..||++.. ..+|.+|..
T Consensus 98 di~~~~~~~~~~~~~~E~VG~vd~--GI~a~~WSPD~Ella~vT~----------~~~l~~mt~ 149 (928)
T PF04762_consen 98 DIILVREDPDPDEDEIEIVGSVDS--GILAASWSPDEELLALVTG----------EGNLLLMTR 149 (928)
T ss_pred eEEEEEccCCCCCceeEEEEEEcC--cEEEEEECCCcCEEEEEeC----------CCEEEEEec
Confidence 455553333333445555554433 5999999999999999863 357777753
No 173
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=92.98 E-value=6 Score=38.78 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=22.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~ 71 (607)
....-.|||||.-|...+. +..-++|-++.+.
T Consensus 51 f~kgckWSPDGSciL~~se--------dn~l~~~nlP~dl 82 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSE--------DNCLNCWNLPFDL 82 (406)
T ss_pred hhccceeCCCCceEEeecc--------cCeeeEEecChhh
Confidence 3456799999999887764 4566777665543
No 174
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=92.93 E-value=0.8 Score=45.98 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=70.6
Q ss_pred CCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEec
Q 007338 27 YPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIP 106 (607)
Q Consensus 27 ~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~ 106 (607)
.+.+..++....|+||..|.-.+ + ...|-++|+.+.++++......-...-......||||++++..
T Consensus 338 v~~gg~vtSl~ls~~g~~lLsss-R---------Ddtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaA--- 404 (459)
T KOG0288|consen 338 VPLGGRVTSLDLSMDGLELLSSS-R---------DDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAA--- 404 (459)
T ss_pred eecCcceeeEeeccCCeEEeeec-C---------CCceeeeecccccEEEEeeccccccccccceeEECCCCceeee---
Confidence 35555799999999999987663 3 2577888999998887754432110011345677788776654
Q ss_pred CCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeee-cC---CCCceeeee
Q 007338 107 SSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FG---TPAVYTAVE 181 (607)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-lt---~~~~~~~~~ 181 (607)
|. ..+.||++++ +|+... |. .+..+..++
T Consensus 405 -----------------------GS-----------------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~ 438 (459)
T KOG0288|consen 405 -----------------------GS-----------------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS 438 (459)
T ss_pred -----------------------cc-----------------------CCCcEEEEEccCceEEEEeccCCCCcceEEEE
Confidence 11 1246777777 666544 32 222467899
Q ss_pred eCCCCceEEEEE
Q 007338 182 PSPDQKYVLITS 193 (607)
Q Consensus 182 ~SpDg~~i~~~~ 193 (607)
|+|-|++++-..
T Consensus 439 W~~sG~~Llsad 450 (459)
T KOG0288|consen 439 WNPSGSGLLSAD 450 (459)
T ss_pred EcCCCchhhccc
Confidence 999999998664
No 175
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=92.91 E-value=0.18 Score=48.57 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=41.0
Q ss_pred EEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCCchhh
Q 007338 498 TLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWSNWFQ 577 (607)
Q Consensus 498 ~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~ 577 (607)
.++.|.. ++ .| |+||+.|+- .-...+ +..-.+-+|++||+|+. ++........
T Consensus 7 ~v~~P~~--~g-~y--PVv~f~~G~------------~~~~s~---Ys~ll~hvAShGyIVV~-~d~~~~~~~~------ 59 (259)
T PF12740_consen 7 LVYYPSS--AG-TY--PVVLFLHGF------------LLINSW---YSQLLEHVASHGYIVVA-PDLYSIGGPD------ 59 (259)
T ss_pred EEEecCC--CC-Cc--CEEEEeCCc------------CCCHHH---HHHHHHHHHhCceEEEE-ecccccCCCC------
Confidence 5678875 22 46 999997741 111111 12236789999999999 5532221111
Q ss_pred HHHHhhcHHHHHHHHHH
Q 007338 578 VQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 578 ~~~~~~~~~~~v~~~~~ 594 (607)
....+.+...-++||.+
T Consensus 60 ~~~~~~~~~~vi~Wl~~ 76 (259)
T PF12740_consen 60 DTDEVASAAEVIDWLAK 76 (259)
T ss_pred cchhHHHHHHHHHHHHh
Confidence 13346666777888777
No 176
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=92.76 E-value=9.5 Score=36.54 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=37.5
Q ss_pred cccceEEccC-CCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPD-GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPD-G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
++-...|.|- |. |+++.. ....|.++++.++.. .-.|-..+ .....+..++|+|.+++|...
T Consensus 16 r~W~~awhp~~g~-ilAscg---------~Dk~vriw~~~~~~s~~ck~vld~-~hkrsVRsvAwsp~g~~La~a 79 (312)
T KOG0645|consen 16 RVWSVAWHPGKGV-ILASCG---------TDKAVRIWSTSSGDSWTCKTVLDD-GHKRSVRSVAWSPHGRYLASA 79 (312)
T ss_pred cEEEEEeccCCce-EEEeec---------CCceEEEEecCCCCcEEEEEeccc-cchheeeeeeecCCCcEEEEe
Confidence 4778899998 76 444442 235677777775332 11111122 122346799999999988775
No 177
>PLN00021 chlorophyllase
Probab=92.69 E-value=0.38 Score=48.37 Aligned_cols=75 Identities=16% Similarity=0.120 Sum_probs=44.0
Q ss_pred ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCC
Q 007338 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLW 572 (607)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~ 572 (607)
..+++++++|.. +++| |+||+.|+. +....+ +......|+++||.|+. ++.+. .+..
T Consensus 37 ~~~p~~v~~P~~---~g~~--PvVv~lHG~------------~~~~~~---y~~l~~~Las~G~~Vva-pD~~g--~~~~ 93 (313)
T PLN00021 37 PPKPLLVATPSE---AGTY--PVLLFLHGY------------LLYNSF---YSQLLQHIASHGFIVVA-PQLYT--LAGP 93 (313)
T ss_pred CCceEEEEeCCC---CCCC--CEEEEECCC------------CCCccc---HHHHHHHHHhCCCEEEE-ecCCC--cCCC
Confidence 579999999974 2344 999998853 111111 11224688999999998 55432 2111
Q ss_pred CchhhHHHHhhcHHHHHHHHHH
Q 007338 573 SNWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 573 ~~~~~~~~~~~~~~~~v~~~~~ 594 (607)
.. .....++.+.++||.+
T Consensus 94 ~~----~~~i~d~~~~~~~l~~ 111 (313)
T PLN00021 94 DG----TDEIKDAAAVINWLSS 111 (313)
T ss_pred Cc----hhhHHHHHHHHHHHHh
Confidence 11 1223456667777764
No 178
>PRK10985 putative hydrolase; Provisional
Probab=92.65 E-value=0.26 Score=50.02 Aligned_cols=94 Identities=15% Similarity=0.009 Sum_probs=50.7
Q ss_pred ceEEEEEECCCCceEEEEEE-cCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLY-LPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~-~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..+.-.++..||..|.-... .|.. .+ +.|+||++|+- .++... .......+.|+++||.|+
T Consensus 30 ~~~~~~~~~~dg~~~~l~w~~~~~~-~~----~~p~vll~HG~-----------~g~~~~--~~~~~~~~~l~~~G~~v~ 91 (324)
T PRK10985 30 TPYWQRLELPDGDFVDLAWSEDPAQ-AR----HKPRLVLFHGL-----------EGSFNS--PYAHGLLEAAQKRGWLGV 91 (324)
T ss_pred CcceeEEECCCCCEEEEecCCCCcc-CC----CCCEEEEeCCC-----------CCCCcC--HHHHHHHHHHHHCCCEEE
Confidence 33444567789987754433 2322 21 23888887742 011111 000112468899999999
Q ss_pred eCCCCceeccCCCCc---hhhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLWSN---WFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~---~~~~~~~~~~~~~~v~~~~~~ 595 (607)
. .+. +|.|+.+. +.+......|+.+.+++|.++
T Consensus 92 ~-~d~--rG~g~~~~~~~~~~~~~~~~D~~~~i~~l~~~ 127 (324)
T PRK10985 92 V-MHF--RGCSGEPNRLHRIYHSGETEDARFFLRWLQRE 127 (324)
T ss_pred E-EeC--CCCCCCccCCcceECCCchHHHHHHHHHHHHh
Confidence 8 443 45444322 112122367888888888875
No 179
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=92.60 E-value=0.48 Score=49.47 Aligned_cols=91 Identities=10% Similarity=-0.041 Sum_probs=55.8
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeC
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAG 561 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~ 561 (607)
.....+...+|..+...++.|..-+ +.|+||++|+.. +....| ......|+++||.|+.
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~~-----~~~~Vl~lHG~~-----------~~~~~~----~~~a~~L~~~Gy~V~~- 168 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAGE-----MRGILIIIHGLN-----------EHSGRY----LHFAKQLTSCGFGVYA- 168 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCCC-----CceEEEEECCch-----------HHHHHH----HHHHHHHHHCCCEEEE-
Confidence 4556778889999999999996312 237888887520 101011 1224688999999998
Q ss_pred CCCceeccCCC----CchhhHHHHhhcHHHHHHHHHHh
Q 007338 562 PSIPIIGEGLW----SNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 562 ~~~~~~g~g~~----~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
++.+ |.|.. ...........|+...+++|..+
T Consensus 169 ~D~r--GhG~S~~~~~~~~~~~~~~~Dl~~~l~~l~~~ 204 (395)
T PLN02652 169 MDWI--GHGGSDGLHGYVPSLDYVVEDTEAFLEKIRSE 204 (395)
T ss_pred eCCC--CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 5553 33332 11123345567777777777643
No 180
>PRK10749 lysophospholipase L2; Provisional
Probab=92.56 E-value=0.4 Score=48.82 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=54.0
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..|...|...||.+|+...+.|. ++ + |+||.+|+- . .....+......|+++||.|+.
T Consensus 29 ~~~~~~~~~~~g~~l~~~~~~~~--~~-~----~~vll~HG~--------------~-~~~~~y~~~~~~l~~~g~~v~~ 86 (330)
T PRK10749 29 QREEAEFTGVDDIPIRFVRFRAP--HH-D----RVVVICPGR--------------I-ESYVKYAELAYDLFHLGYDVLI 86 (330)
T ss_pred hccceEEEcCCCCEEEEEEccCC--CC-C----cEEEEECCc--------------c-chHHHHHHHHHHHHHCCCeEEE
Confidence 56778888899999999998875 21 2 667776642 1 1010111123578899999998
Q ss_pred CCCCceec-cCCCCch------hhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIG-EGLWSNW------FQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g-~g~~~~~------~~~~~~~~~~~~~v~~~~~~ 595 (607)
++.+-.| +...... .-....++|+...++.++..
T Consensus 87 -~D~~G~G~S~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 127 (330)
T PRK10749 87 -IDHRGQGRSGRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP 127 (330)
T ss_pred -EcCCCCCCCCCCCCCCCcCccccHHHHHHHHHHHHHHHHhc
Confidence 6654333 1111110 12256666777777766544
No 181
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.54 E-value=8.5 Score=42.05 Aligned_cols=72 Identities=17% Similarity=0.052 Sum_probs=41.7
Q ss_pred CcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccce
Q 007338 245 RSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQT 324 (607)
Q Consensus 245 ~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~ 324 (607)
-.++.||||+.. -+. ..+..-++|.+|-..+ -..|-.+...+..+..|||++.++..+. +.+-
T Consensus 512 L~v~~Spdgk~L--aVs---------LLdnTVkVyflDtlKF----flsLYGHkLPV~smDIS~DSklivTgSA--DKnV 574 (888)
T KOG0306|consen 512 LCVSVSPDGKLL--AVS---------LLDNTVKVYFLDTLKF----FLSLYGHKLPVLSMDISPDSKLIVTGSA--DKNV 574 (888)
T ss_pred EEEEEcCCCcEE--EEE---------eccCeEEEEEecceee----eeeecccccceeEEeccCCcCeEEeccC--CCce
Confidence 358999999932 111 1233345555542000 0122234556778899999998887653 2346
Q ss_pred EEEEEcCCC
Q 007338 325 RTWLVCPGS 333 (607)
Q Consensus 325 ~l~~~dl~~ 333 (607)
.+|=.|...
T Consensus 575 KiWGLdFGD 583 (888)
T KOG0306|consen 575 KIWGLDFGD 583 (888)
T ss_pred EEeccccch
Confidence 788777655
No 182
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=92.16 E-value=0.61 Score=43.88 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=46.8
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCch---hHHHhccCeEEEeCCC
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS---SLIFLARRFAVLAGPS 563 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~---~q~la~~GY~Vl~~~~ 563 (607)
..-.||++|.-|=..|..-.+ ++. |.||.- | +|...+.++ ..||+++||.|+.--+
T Consensus 7 i~~~~~~~I~vwet~P~~~~~-~~~--~tiliA-~-----------------Gf~rrmdh~agLA~YL~~NGFhViRyDs 65 (294)
T PF02273_consen 7 IRLEDGRQIRVWETRPKNNEP-KRN--NTILIA-P-----------------GFARRMDHFAGLAEYLSANGFHVIRYDS 65 (294)
T ss_dssp EEETTTEEEEEEEE---TTS----S---EEEEE-------------------TT-GGGGGGHHHHHHHHTTT--EEEE--
T ss_pred eEcCCCCEEEEeccCCCCCCc-ccC--CeEEEe-c-----------------chhHHHHHHHHHHHHHhhCCeEEEeccc
Confidence 344699999999999998555 334 777642 1 222222232 4599999999997344
Q ss_pred Cceec-cCCCCchhhHHHHhhcHHHHHHHHHHhcc
Q 007338 564 IPIIG-EGLWSNWFQVQRLLLKKLFDVEWLIQAEL 597 (607)
Q Consensus 564 ~~~~g-~g~~~~~~~~~~~~~~~~~~v~~~~~~~~ 597 (607)
...+| +-++..+.-+.....+++..++||-++|.
T Consensus 66 l~HvGlSsG~I~eftms~g~~sL~~V~dwl~~~g~ 100 (294)
T PF02273_consen 66 LNHVGLSSGDINEFTMSIGKASLLTVIDWLATRGI 100 (294)
T ss_dssp -B-------------HHHHHHHHHHHHHHHHHTT-
T ss_pred cccccCCCCChhhcchHHhHHHHHHHHHHHHhcCC
Confidence 44556 33336777778889999999999998876
No 183
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=91.93 E-value=0.43 Score=49.74 Aligned_cols=86 Identities=19% Similarity=0.287 Sum_probs=48.4
Q ss_pred CCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccC-eEEEeCCCCcee
Q 007338 489 RKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARR-FAVLAGPSIPII 567 (607)
Q Consensus 489 s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~G-Y~Vl~~~~~~~~ 567 (607)
+.|.+.+ -|+.|. ..+ + ++||+||+|+|-|..|. +. .+ ....+.||++| .+|+. .|.+ -
T Consensus 76 sEDCL~L--NIwaP~-~~a-~--~~PVmV~IHGG~y~~Gs------~s-----~~-~ydgs~La~~g~vVvVS-vNYR-L 135 (491)
T COG2272 76 SEDCLYL--NIWAPE-VPA-E--KLPVMVYIHGGGYIMGS------GS-----EP-LYDGSALAARGDVVVVS-VNYR-L 135 (491)
T ss_pred cccceeE--EeeccC-CCC-C--CCcEEEEEeccccccCC------Cc-----cc-ccChHHHHhcCCEEEEE-eCcc-c
Confidence 3455444 456788 222 2 46999999988766442 11 11 12358999999 88887 3311 1
Q ss_pred c-cCC----CCc--hhhH-HHHhhcHHHHHHHHHH
Q 007338 568 G-EGL----WSN--WFQV-QRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 568 g-~g~----~~~--~~~~-~~~~~~~~~~v~~~~~ 594 (607)
| .|- ... +.+. -.-+.|++.|++|+-+
T Consensus 136 G~lGfL~~~~~~~~~~~~~n~Gl~DqilALkWV~~ 170 (491)
T COG2272 136 GALGFLDLSSLDTEDAFASNLGLLDQILALKWVRD 170 (491)
T ss_pred ccceeeehhhccccccccccccHHHHHHHHHHHHH
Confidence 2 121 111 1111 1237799999999865
No 184
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=91.82 E-value=0.48 Score=49.15 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=35.8
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
.+..+.|||||++|+.++.+ .-|.++|..+.+..-+.. +...+--.+.||||||.
T Consensus 292 ~in~f~FS~DG~~LA~VSqD-------------GfLRvF~fdt~eLlg~mk------------SYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQD-------------GFLRIFDFDTQELLGVMK------------SYFGGLLCVCWSPDGKY 346 (636)
T ss_pred cccceeEcCCCceEEEEecC-------------ceEEEeeccHHHHHHHHH------------hhccceEEEEEcCCccE
Confidence 45689999999999999742 246667766654333321 11122234999999993
No 185
>PRK02888 nitrous-oxide reductase; Validated
Probab=91.81 E-value=4.3 Score=44.13 Aligned_cols=146 Identities=15% Similarity=0.084 Sum_probs=75.2
Q ss_pred eEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEEec-CCCCC-C
Q 007338 36 VSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIP-SSRRD-P 112 (607)
Q Consensus 36 ~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~-~~~~~-~ 112 (607)
.-++|||+.+.-. . +..+-+-++|.++.+.. ++. ... ......+++|++++|++.. .+... +
T Consensus 198 ~PlpnDGk~l~~~-~--------ey~~~vSvID~etmeV~~qV~-Vdg-----npd~v~~spdGk~afvTsyNsE~G~tl 262 (635)
T PRK02888 198 IPLPNDGKDLDDP-K--------KYRSLFTAVDAETMEVAWQVM-VDG-----NLDNVDTDYDGKYAFSTCYNSEEGVTL 262 (635)
T ss_pred cccCCCCCEeecc-c--------ceeEEEEEEECccceEEEEEE-eCC-----CcccceECCCCCEEEEeccCcccCcce
Confidence 3457788765222 1 45677888899987653 331 122 1457789999998888742 11111 0
Q ss_pred CCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-C----C-C-eeecCCCCceeeeeeCCC
Q 007338 113 PKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-D----G-T-AKDFGTPAVYTAVEPSPD 185 (607)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~----g-~-~~~lt~~~~~~~~~~SpD 185 (607)
.....-.....+..+ ........ .++ .+.+....++.++|. + + + ...|..+..-..+.+|||
T Consensus 263 ~em~a~e~d~~vvfn-------i~~iea~v---kdG-K~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPD 331 (635)
T PRK02888 263 AEMMAAERDWVVVFN-------IARIEEAV---KAG-KFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPD 331 (635)
T ss_pred eeeccccCceEEEEc-------hHHHHHhh---hCC-CEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCC
Confidence 000000000011000 00000101 111 122223456888887 4 2 2 233444555678999999
Q ss_pred CceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 186 QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 186 g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
|++++.+.... ..+-++|++.-
T Consensus 332 GkylyVanklS------------~tVSVIDv~k~ 353 (635)
T PRK02888 332 GKYFIANGKLS------------PTVTVIDVRKL 353 (635)
T ss_pred CCEEEEeCCCC------------CcEEEEEChhh
Confidence 99999885432 35777777653
No 186
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=91.47 E-value=6.6 Score=40.73 Aligned_cols=182 Identities=12% Similarity=0.126 Sum_probs=101.5
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee---ecccCCCccccccccceEEecCCeEEEEEe
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK---PLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~---~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
...+++.-.++|||+.|+.-. ....|-+||++.-.++ +||...-.| -.++.+||.++.|...
T Consensus 464 rdnyiRSckL~pdgrtLivGG----------eastlsiWDLAapTprikaeltssapaC-----yALa~spDakvcFscc 528 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGG----------EASTLSIWDLAAPTPRIKAELTSSAPAC-----YALAISPDAKVCFSCC 528 (705)
T ss_pred cccceeeeEecCCCceEEecc----------ccceeeeeeccCCCcchhhhcCCcchhh-----hhhhcCCccceeeeec
Confidence 444788899999999987643 2477888899876553 333111111 1567789988877642
Q ss_pred cCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CC-CeeecCC-CCceeeeee
Q 007338 106 PSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DG-TAKDFGT-PAVYTAVEP 182 (607)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g-~~~~lt~-~~~~~~~~~ 182 (607)
. .+.|.++|+ +. .++++-. .+...-+.+
T Consensus 529 s-------------------------------------------------dGnI~vwDLhnq~~VrqfqGhtDGascIdi 559 (705)
T KOG0639|consen 529 S-------------------------------------------------DGNIAVWDLHNQTLVRQFQGHTDGASCIDI 559 (705)
T ss_pred c-------------------------------------------------CCcEEEEEcccceeeecccCCCCCceeEEe
Confidence 1 134555666 33 3555532 234567899
Q ss_pred CCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEe
Q 007338 183 SPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (607)
Q Consensus 183 SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (607)
|+||.+|.--.. ...|.-||+..+ +++..-. | .-.+.++...|.+.+.++=+
T Consensus 560 s~dGtklWTGGl-------------DntvRcWDlreg--rqlqqhd--------F---~SQIfSLg~cP~~dWlavGM-- 611 (705)
T KOG0639|consen 560 SKDGTKLWTGGL-------------DNTVRCWDLREG--RQLQQHD--------F---SSQIFSLGYCPTGDWLAVGM-- 611 (705)
T ss_pred cCCCceeecCCC-------------ccceeehhhhhh--hhhhhhh--------h---hhhheecccCCCccceeeec--
Confidence 999998864422 235777888655 2221100 0 01123466677777321111
Q ss_pred ecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEE
Q 007338 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNE 316 (607)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~ 316 (607)
.++ .+.++- ..+.+...|...+..+-.+-|++=|+.|+..
T Consensus 612 -ens----------~vevlh---~skp~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 612 -ENS----------NVEVLH---TSKPEKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred -ccC----------cEEEEe---cCCccceeecccccEEEEEEecccCceeeec
Confidence 111 111111 1221333455555566678888889887764
No 187
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=91.39 E-value=0.91 Score=50.91 Aligned_cols=87 Identities=10% Similarity=0.017 Sum_probs=52.8
Q ss_pred eEEeccCCCCCCCCceee-eecCcccceeeEcCCCcEEEEEEeccc--cceEEEEEcCCCCCCCceEeeeccccccccCC
Q 007338 277 IIYTQPAEPAEGEKPEIL-HKLDLRFRSVSWCDDSLALVNETWYKT--SQTRTWLVCPGSKDVAPRVLFDRVFENVYSDP 353 (607)
Q Consensus 277 ~~~~~~~~~~~g~~~~~l-~~~~~~~~~~~ws~Dg~~l~~~~~~~~--~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~ 353 (607)
.|.+.| .+|..++.+ ......+..|.|||||+.|+|....+. +...||+.+|.+....+..| +++.+
T Consensus 330 ~L~~~D---~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl---~ve~a---- 399 (912)
T TIGR02171 330 NLAYID---YTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL---PVENA---- 399 (912)
T ss_pred eEEEEe---cCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe---ecccc----
Confidence 455555 355455555 455566778999999999988544544 67789999999864333333 22221
Q ss_pred CCCCeeeCCCCCEEEEEeee
Q 007338 354 GSPMMTRTSTGTNVIAKIKK 373 (607)
Q Consensus 354 ~~~~~~~~~dg~~~~~~~~~ 373 (607)
..+.++..+.|..+++...+
T Consensus 400 aiprwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 400 AIPRWRVLENGDTVIVYVSD 419 (912)
T ss_pred cccceEecCCCCeEEEEEcC
Confidence 11224446777765544433
No 188
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.36 E-value=1.2 Score=43.25 Aligned_cols=66 Identities=27% Similarity=0.434 Sum_probs=43.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC---CCceeecccCCCcc--ccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE---TGEAKPLFESPDIC--LNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~---~g~~~~lt~~~~~~--~~~~~~~~~Wspd~~~l~~~ 104 (607)
.++..++||||.++|++... .+..+||+.-+. .|.+..++...... ....+..+.|.+++++++..
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~-------~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~ 183 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVED-------GGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLG 183 (253)
T ss_pred ceEEEEECCCCcEEEEEEec-------CCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEe
Confidence 68999999999999999875 345778887543 34233443211100 01124588999999988875
No 189
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=91.33 E-value=25 Score=38.34 Aligned_cols=53 Identities=15% Similarity=0.048 Sum_probs=31.5
Q ss_pred eEEEEeC-CCCeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 158 QLVLGSL-DGTAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 158 ~l~~~~~-~g~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
.|.+.|+ +|+...-.-......+.|.+|++.++|+...... .+.+|+.-.+.+
T Consensus 156 ~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~--------rp~kv~~h~~gt 209 (682)
T COG1770 156 TLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENH--------RPDKVWRHRLGT 209 (682)
T ss_pred EEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCC--------CcceEEEEecCC
Confidence 5566677 6643221111223578999999999999764321 145676665554
No 190
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=91.24 E-value=0.29 Score=44.27 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=32.0
Q ss_pred hHHHhccCeEEEeCCCCceec-cCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 548 SLIFLARRFAVLAGPSIPIIG-EGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g-~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
...|..+||+++. +|+..+| +.+++ +.+--.+.|+.++++||-++
T Consensus 53 a~~l~~~G~atlR-fNfRgVG~S~G~f--D~GiGE~~Da~aaldW~~~~ 98 (210)
T COG2945 53 ARALVKRGFATLR-FNFRGVGRSQGEF--DNGIGELEDAAAALDWLQAR 98 (210)
T ss_pred HHHHHhCCceEEe-ecccccccccCcc--cCCcchHHHHHHHHHHHHhh
Confidence 4588899999998 7775554 22221 23344588999999999876
No 191
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.15 E-value=27 Score=38.28 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=38.9
Q ss_pred ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+||++|++|+-.. .+.|-..|+++++.. +...+..+ .+.+..+..+||+.+++..
T Consensus 24 ~~~~s~nG~~L~t~~-----------~d~Vi~idv~t~~~~-l~s~~~ed-~d~ita~~l~~d~~~L~~a 80 (775)
T KOG0319|consen 24 PVAWSSNGQHLYTAC-----------GDRVIIIDVATGSIA-LPSGSNED-EDEITALALTPDEEVLVTA 80 (775)
T ss_pred ceeECCCCCEEEEec-----------CceEEEEEccCCcee-cccCCccc-hhhhheeeecCCccEEEEe
Confidence 389999999986654 356888899999874 43222211 1234577888898777764
No 192
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=91.15 E-value=0.21 Score=51.72 Aligned_cols=58 Identities=24% Similarity=0.263 Sum_probs=39.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.+....|||||++||.+++ ++ -|-++|..+.+..-+...=-++ .--+.||||+++|+.
T Consensus 292 ~in~f~FS~DG~~LA~VSq--------DG--fLRvF~fdt~eLlg~mkSYFGG----LLCvcWSPDGKyIvt 349 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQ--------DG--FLRIFDFDTQELLGVMKSYFGG----LLCVCWSPDGKYIVT 349 (636)
T ss_pred cccceeEcCCCceEEEEec--------Cc--eEEEeeccHHHHHHHHHhhccc----eEEEEEcCCccEEEe
Confidence 6888999999999999986 34 5566666666654442110000 236789999999887
No 193
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=91.05 E-value=1 Score=46.39 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=53.0
Q ss_pred CceeeeEEE-eccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccC
Q 007338 2 PFFTGIGIH-RLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 2 ~~~~~~~~~-~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
++.++.|+- |. ++....++. ....+++..++||||..||.-+. ++---||.++..+.+..++-..
T Consensus 424 Gt~~G~w~V~d~----e~~~lv~~~--~d~~~ls~v~ysp~G~~lAvgs~--------d~~iyiy~Vs~~g~~y~r~~k~ 489 (626)
T KOG2106|consen 424 GTATGRWFVLDT----ETQDLVTIH--TDNEQLSVVRYSPDGAFLAVGSH--------DNHIYIYRVSANGRKYSRVGKC 489 (626)
T ss_pred eeccceEEEEec----ccceeEEEE--ecCCceEEEEEcCCCCEEEEecC--------CCeEEEEEECCCCcEEEEeeee
Confidence 455667765 43 244444454 34668999999999999999775 3444455555554444444222
Q ss_pred CCccccccccceEEecCCeEEEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.. ..+..+.||+|++++..
T Consensus 490 ~g----s~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 490 SG----SPITHLDWSSDSQFLVS 508 (626)
T ss_pred cC----ceeEEeeecCCCceEEe
Confidence 21 23568899999988765
No 194
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=90.92 E-value=0.73 Score=46.52 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=56.1
Q ss_pred EEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCch--hHHHhccCeEEEe
Q 007338 483 EMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTS--SLIFLARRFAVLA 560 (607)
Q Consensus 483 e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~--~q~la~~GY~Vl~ 560 (607)
..+.+ .....|..+||+|..-.+.+ .+|+|||+||| +.+.+++. ...++. .++-++.+=+|+.
T Consensus 64 ~dv~~--~~~~~l~vRly~P~~~~~~~--~~p~lvyfHGG--------Gf~~~S~~---~~~y~~~~~~~a~~~~~vvvS 128 (336)
T KOG1515|consen 64 KDVTI--DPFTNLPVRLYRPTSSSSET--KLPVLVYFHGG--------GFCLGSAN---SPAYDSFCTRLAAELNCVVVS 128 (336)
T ss_pred eeeEe--cCCCCeEEEEEcCCCCCccc--CceEEEEEeCC--------ccEeCCCC---CchhHHHHHHHHHHcCeEEEe
Confidence 44444 34457899999998866523 45999999965 22333322 111232 3454667888887
Q ss_pred CCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 561 GPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 561 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
++|...+-..+ -...+|+.+|+.|+-++.
T Consensus 129 ------VdYRLAPEh~~-Pa~y~D~~~Al~w~~~~~ 157 (336)
T KOG1515|consen 129 ------VDYRLAPEHPF-PAAYDDGWAALKWVLKNS 157 (336)
T ss_pred ------cCcccCCCCCC-CccchHHHHHHHHHHHhH
Confidence 33433332222 344789999999998874
No 195
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=90.74 E-value=9.9 Score=40.95 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=87.6
Q ss_pred CceeeeEEEeccCCCCCCCeeeeecCCCCC-cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccC
Q 007338 2 PFFTGIGIHRLLPDDSLGPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 2 ~~~~~~~~~~~~~~~~~g~~~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
...+.+-|++|++++ .=..+.+...+... ......++-|++.+++.+. ...+|.++++++...+.+-..
T Consensus 400 st~~~~~iy~L~~~~-~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~---------~~~~le~~el~~ps~kel~~~ 469 (691)
T KOG2048|consen 400 STVSRTKIYRLQPDP-NVKVINVDDVPLALLDASAISFTIDKNKLFLVSK---------NIFSLEEFELETPSFKELKSI 469 (691)
T ss_pred eeccceEEEEeccCc-ceeEEEeccchhhhccceeeEEEecCceEEEEec---------ccceeEEEEecCcchhhhhcc
Confidence 455677888888654 33444454444322 3567889999999877762 246788888877654444221
Q ss_pred CCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEE
Q 007338 81 PDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLV 160 (607)
Q Consensus 81 ~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (607)
....--..+..+.-|+||.+++... ...+|+
T Consensus 470 ~~~~~~~~I~~l~~SsdG~yiaa~~-------------------------------------------------t~g~I~ 500 (691)
T KOG2048|consen 470 QSQAKCPSISRLVVSSDGNYIAAIS-------------------------------------------------TRGQIF 500 (691)
T ss_pred ccccCCCcceeEEEcCCCCEEEEEe-------------------------------------------------ccceEE
Confidence 1110011244666777877766531 236888
Q ss_pred EEeC-CCCeeecCC--CCceeeeeeCCC-CceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 161 LGSL-DGTAKDFGT--PAVYTAVEPSPD-QKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 161 ~~~~-~g~~~~lt~--~~~~~~~~~SpD-g~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
++++ +++.+.|.. +..++...++|. -..|++.... ..++.+|++..+..
T Consensus 501 v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~-------------nQv~efdi~~~~l~ 553 (691)
T KOG2048|consen 501 VYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSN-------------NQVFEFDIEARNLT 553 (691)
T ss_pred EEEcccceeecchhccCcceeeeeccccccCcEEEEecC-------------CeEEEEecchhhhh
Confidence 8898 445555431 235567888864 4566666432 36788888544433
No 196
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.62 E-value=3.3 Score=41.79 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=37.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCccccccccceEEecCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNS 98 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspd~ 98 (607)
.+.+..|||||+.|+++.. ....+|++++|. ...+|..+. +..+..+.|+.|.
T Consensus 188 eV~DL~FS~dgk~lasig~-----------d~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGA-----------DSARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDN 241 (398)
T ss_pred ccccceeCCCCcEEEEecC-----------CceEEEEeccCchhhhcCCccc---chhhhhceecccC
Confidence 5889999999999999863 266777888884 345553221 2235688998664
No 197
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.47 E-value=20 Score=36.86 Aligned_cols=52 Identities=25% Similarity=0.208 Sum_probs=36.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
.+-..+.||||++||+.- ....|.+++..+.+.++.+....+ .+..+.|-..
T Consensus 204 eil~~avS~Dgkylatgg----------~d~~v~Iw~~~t~ehv~~~~ghr~----~V~~L~fr~g 255 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGG----------RDRHVQIWDCDTLEHVKVFKGHRG----AVSSLAFRKG 255 (479)
T ss_pred eeEEEEEcCCCcEEEecC----------CCceEEEecCcccchhhccccccc----ceeeeeeecC
Confidence 466789999999998863 235677899999998877533222 2566666544
No 198
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=90.32 E-value=1.3 Score=50.27 Aligned_cols=47 Identities=21% Similarity=0.079 Sum_probs=31.8
Q ss_pred hhHHHhccCeEEEeCCCCc-eeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 547 SSLIFLARRFAVLAGPSIP-IIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~~-~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
..++|+.+||+|+. .+.+ ..++++. ...+..+...|+.++|+||..+
T Consensus 271 ~~~~~~~rGYaVV~-~D~RGtg~SeG~-~~~~~~~E~~D~~~vIeWl~~~ 318 (767)
T PRK05371 271 LNDYFLPRGFAVVY-VSGIGTRGSDGC-PTTGDYQEIESMKAVIDWLNGR 318 (767)
T ss_pred HHHHHHhCCeEEEE-EcCCCCCCCCCc-CccCCHHHHHHHHHHHHHHhhC
Confidence 35899999999997 3331 2222222 1234467789999999999964
No 199
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=90.30 E-value=4 Score=43.51 Aligned_cols=70 Identities=23% Similarity=0.469 Sum_probs=46.9
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
.-++.+..+ ++...+|||||++||-+.. ...|.++.+..++. ++..... .+...-..+.|.=|+++
T Consensus 713 ~~~l~gHtd--qIf~~AWSpdGr~~AtVcK----------Dg~~rVy~Prs~e~-pv~Eg~g-pvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 713 YSRLVGHTD--QIFGIAWSPDGRRIATVCK----------DGTLRVYEPRSREQ-PVYEGKG-PVGTRGARILWACDGRI 778 (1012)
T ss_pred hheeccCcC--ceeEEEECCCCcceeeeec----------CceEEEeCCCCCCC-ccccCCC-CccCcceeEEEEecCcE
Confidence 334544444 6899999999999999875 25788889987764 4432222 21111236789989998
Q ss_pred EEEE
Q 007338 101 LIFT 104 (607)
Q Consensus 101 l~~~ 104 (607)
++.+
T Consensus 779 viv~ 782 (1012)
T KOG1445|consen 779 VIVV 782 (1012)
T ss_pred EEEe
Confidence 7775
No 200
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=90.27 E-value=22 Score=35.80 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=28.1
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecc
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (607)
+....++|.||+++++. +. .....+-++|++.++...-.
T Consensus 96 ~~~~~~ls~dgk~~~V~-N~-------TPa~SVtVVDl~~~kvv~ei 134 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQ-NF-------TPATSVTVVDLAAKKVVGEI 134 (342)
T ss_dssp -GGGEEE-TTSSEEEEE-EE-------SSSEEEEEEETTTTEEEEEE
T ss_pred cccceEEccCCcEEEEE-cc-------CCCCeEEEEECCCCceeeee
Confidence 46778999999987554 43 45689999999998865443
No 201
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=90.12 E-value=19 Score=35.01 Aligned_cols=58 Identities=22% Similarity=0.086 Sum_probs=34.6
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
-|+|=+...|-+. ...+.... + .+....|++||+.|+-..+ ...++.+|.++|+..+-
T Consensus 70 ~I~LWnv~gdceN--~~~lkgHs-g-AVM~l~~~~d~s~i~S~gt----------Dk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 70 AIVLWNVYGDCEN--FWVLKGHS-G-AVMELHGMRDGSHILSCGT----------DKTVRGWDAETGKRIRK 127 (338)
T ss_pred eEEEEeccccccc--eeeecccc-c-eeEeeeeccCCCEEEEecC----------CceEEEEecccceeeeh
Confidence 4556665432222 22333222 2 5888899999988754432 25788889998876433
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=6.9 Score=39.59 Aligned_cols=58 Identities=17% Similarity=0.230 Sum_probs=34.4
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....++++||+.||-... ++.-.+|-++-..-..... ...+.+.++.||||+++|+..
T Consensus 147 ~k~vaf~~~gs~latgg~--------dg~lRv~~~Ps~~t~l~e~------~~~~eV~DL~FS~dgk~lasi 204 (398)
T KOG0771|consen 147 QKVVAFNGDGSKLATGGT--------DGTLRVWEWPSMLTILEEI------AHHAEVKDLDFSPDGKFLASI 204 (398)
T ss_pred ceEEEEcCCCCEeeeccc--------cceEEEEecCcchhhhhhH------hhcCccccceeCCCCcEEEEe
Confidence 466788999988877643 4444444433221111111 112237799999999988775
No 203
>PLN02872 triacylglycerol lipase
Probab=89.59 E-value=2.4 Score=44.16 Aligned_cols=106 Identities=13% Similarity=0.048 Sum_probs=56.2
Q ss_pred CCceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC--chhHHHhccCe
Q 007338 479 SLQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP--TSSLIFLARRF 556 (607)
Q Consensus 479 ~~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~--~~~q~la~~GY 556 (607)
..+.|...+++.||..|.-.-+.+.+-..+. .+-|+||+.|+-. .+...|..... .-...||++||
T Consensus 41 gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~-~~~~~Vll~HGl~-----------~ss~~w~~~~~~~sla~~La~~Gy 108 (395)
T PLN02872 41 GYSCTEHTIQTKDGYLLALQRVSSRNPRLGS-QRGPPVLLQHGLF-----------MAGDAWFLNSPEQSLGFILADHGF 108 (395)
T ss_pred CCCceEEEEECCCCcEEEEEEcCCCCCCCCC-CCCCeEEEeCccc-----------ccccceeecCcccchHHHHHhCCC
Confidence 3488999999999988776666332211111 1126777777531 11112211111 11236899999
Q ss_pred EEEeCCCCcee-ccCCC----Cc-----hhhHHHHhhcHHHHHHHHHHhc
Q 007338 557 AVLAGPSIPII-GEGLW----SN-----WFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 557 ~Vl~~~~~~~~-g~g~~----~~-----~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
.|+..+.+++. +.|.. .. ..|-+....|+.+.|+++.+..
T Consensus 109 dV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~ 158 (395)
T PLN02872 109 DVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT 158 (395)
T ss_pred CcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99983332211 01211 11 1232333579999999997653
No 204
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=89.35 E-value=18 Score=39.75 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=36.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC---CCCceeecccCCCc---cccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGEAKPLFESPDI---CLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~~~~lt~~~~~---~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+-..+.+||++.++-.+. +..-.+|-+-+ ..|..+++....+. .+.+.+.....|||++++...
T Consensus 456 aIWsi~~~pD~~g~vT~sa--------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSA--------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred ceeeeeecCCCCceEEecC--------CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE
Confidence 5778899999999776653 34445554322 22333221111110 011224578899999988874
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=89.26 E-value=28 Score=36.71 Aligned_cols=38 Identities=8% Similarity=0.089 Sum_probs=23.8
Q ss_pred ceEEEEeCCCCeee-cCC-CCceeeeeeCCCCceEEEEEc
Q 007338 157 AQLVLGSLDGTAKD-FGT-PAVYTAVEPSPDQKYVLITSM 194 (607)
Q Consensus 157 ~~l~~~~~~g~~~~-lt~-~~~~~~~~~SpDg~~i~~~~~ 194 (607)
+.+-++..+|-.+. |.. ...+..++|.|+++.|+|...
T Consensus 126 G~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 126 GVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred ceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 44555555563222 222 235667999999999999853
No 206
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.04 E-value=23 Score=34.39 Aligned_cols=77 Identities=13% Similarity=0.137 Sum_probs=44.6
Q ss_pred EEEeCCC--CeeecCCC---CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCC
Q 007338 160 VLGSLDG--TAKDFGTP---AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIP 234 (607)
Q Consensus 160 ~~~~~~g--~~~~lt~~---~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~ 234 (607)
+++|.++ ++..+... .++.--.|||||++|+.+.++- .. ...-|-+||...+ ...+.+.
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf--d~------~rGViGvYd~r~~-fqrvgE~------- 157 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF--DP------NRGVIGVYDAREG-FQRVGEF------- 157 (366)
T ss_pred EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC--CC------CCceEEEEecccc-cceeccc-------
Confidence 3455533 34444332 2444568999999888776542 11 1235778887733 3333331
Q ss_pred cccccccCCCCcceeecCCCc
Q 007338 235 VCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 235 ~~~~~~~~~~~~~~wspdg~~ 255 (607)
.....++..+.|.+||.-
T Consensus 158 ---~t~GiGpHev~lm~DGrt 175 (366)
T COG3490 158 ---STHGIGPHEVTLMADGRT 175 (366)
T ss_pred ---ccCCcCcceeEEecCCcE
Confidence 122356678999999983
No 207
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=88.90 E-value=4.3 Score=40.33 Aligned_cols=57 Identities=12% Similarity=0.157 Sum_probs=36.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+...+++|--..|+-+.. ....|+++|+.++.+. .++ ..- . -..+.|+| ....|.+
T Consensus 189 ti~svkfNpvETsILas~~---------sDrsIvLyD~R~~~Pl~KVi-~~m-R----TN~IswnP-eafnF~~ 246 (433)
T KOG0268|consen 189 SISSVKFNPVETSILASCA---------SDRSIVLYDLRQASPLKKVI-LTM-R----TNTICWNP-EAFNFVA 246 (433)
T ss_pred ceeEEecCCCcchheeeec---------cCCceEEEecccCCccceee-eec-c----ccceecCc-cccceee
Confidence 3677788887777766653 2368999999988763 232 111 1 35789999 4555554
No 208
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=88.89 E-value=8.3 Score=39.05 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=64.9
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCC
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPP 113 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~ 113 (607)
-..++...|.-| |++ +.-.-|+.++.++|+.+.++...++..-....++...+++.++|.-+....
T Consensus 118 LGl~f~~~ggdL-~Va---------DAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~---- 183 (376)
T KOG1520|consen 118 LGIRFDKKGGDL-YVA---------DAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKY---- 183 (376)
T ss_pred ceEEeccCCCeE-EEE---------ecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEecccccc----
Confidence 345566666543 333 334668888889999888875544321112235556665555554211000
Q ss_pred CCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCC-ceeeeeeCCCCceEEE
Q 007338 114 KKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYVLI 191 (607)
Q Consensus 114 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~-~~~~~~~SpDg~~i~~ 191 (607)
..+.+.- ..+.....++|+.+|... .++.|...- ....+++|||+.++++
T Consensus 184 --------------------~~rd~~~--------a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~ 235 (376)
T KOG1520|consen 184 --------------------DRRDFVF--------AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLV 235 (376)
T ss_pred --------------------chhheEE--------eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEE
Confidence 0000000 001111357899999844 455554432 3358999999999999
Q ss_pred EEcc
Q 007338 192 TSMH 195 (607)
Q Consensus 192 ~~~~ 195 (607)
+...
T Consensus 236 ~Et~ 239 (376)
T KOG1520|consen 236 AETT 239 (376)
T ss_pred Eeec
Confidence 8653
No 209
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=88.85 E-value=16 Score=34.70 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=20.6
Q ss_pred CC-CeeecCCCCceeeeeeCCCCceEEEE
Q 007338 165 DG-TAKDFGTPAVYTAVEPSPDQKYVLIT 192 (607)
Q Consensus 165 ~g-~~~~lt~~~~~~~~~~SpDg~~i~~~ 192 (607)
+| .++.|-.+..+.++.+|+||++|.++
T Consensus 174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia 202 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPVTSLEVSQDGRILTIA 202 (334)
T ss_pred cCcEEEEEecCCCCcceeeccCCCEEEEe
Confidence 55 45556555567789999999988766
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=88.22 E-value=4.1 Score=40.57 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=44.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
.+....|||||..||-.+. .+.-|-++.+..|+...=.+..-.+ ..+-++.|+||+++|..+.
T Consensus 175 ~lAalafs~~G~llATASe---------KGTVIRVf~v~~G~kl~eFRRG~~~--~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASE---------KGTVIRVFSVPEGQKLYEFRRGTYP--VSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred ceeEEEECCCCCEEEEecc---------CceEEEEEEcCCccEeeeeeCCcee--eEEEEEEECCCCCeEEEec
Confidence 5889999999999998874 4688999999888642221111111 1245889999999877764
No 211
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=88.08 E-value=8.3 Score=39.00 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=38.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+++.+|||....++--+ +.+.|-++|..-.+ +++|. .... .+..+.|.|.+.+++..
T Consensus 182 aIRdlafSpnDskF~t~S----------dDg~ikiWdf~~~kee~vL~-GHgw----dVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCS----------DDGTIKIWDFRMPKEERVLR-GHGW----DVKSVDWHPTKGLIASG 240 (464)
T ss_pred hhheeccCCCCceeEEec----------CCCeEEEEeccCCchhheec-cCCC----CcceeccCCccceeEEc
Confidence 689999999766644333 23566666776554 45663 2222 26789999998888864
No 212
>PRK13614 lipoprotein LpqB; Provisional
Probab=88.07 E-value=45 Score=36.51 Aligned_cols=65 Identities=11% Similarity=0.064 Sum_probs=39.7
Q ss_pred CCCeeeeecCCCC--CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEe
Q 007338 18 LGPEKEVHGYPDG--AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV 95 (607)
Q Consensus 18 ~g~~~~lt~~~~~--~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws 95 (607)
++...++.+.... .....+..|+||+.+|++.. ....||+... ++..+.+..... +..+.|.
T Consensus 328 ~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~---------~~~~l~~~~~-g~~~~~~~~g~~------Lt~PS~d 391 (573)
T PRK13614 328 NGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNG---------SRTTLYTVSP-GQPARALTSGST------LTRPSFS 391 (573)
T ss_pred CCCcccCCCccCcCcccccceeecCCCceEEEecC---------CCcEEEEecC-CCcceeeecCCC------ccCCccc
Confidence 4444455443322 14678999999999999842 2357887766 345555433221 4567777
Q ss_pred cCC
Q 007338 96 NNS 98 (607)
Q Consensus 96 pd~ 98 (607)
+++
T Consensus 392 ~~g 394 (573)
T PRK13614 392 PQD 394 (573)
T ss_pred CCC
Confidence 666
No 213
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.72 E-value=7.6 Score=39.33 Aligned_cols=109 Identities=19% Similarity=0.216 Sum_probs=66.6
Q ss_pred cCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceee
Q 007338 171 FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWR 250 (607)
Q Consensus 171 lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ws 250 (607)
+...+.+.++..|+||..|+..+-+ ..+-++|+.+.+++.....+.... .-......+|
T Consensus 338 v~~gg~vtSl~ls~~g~~lLsssRD-------------dtl~viDlRt~eI~~~~sA~g~k~--------asDwtrvvfS 396 (459)
T KOG0288|consen 338 VPLGGRVTSLDLSMDGLELLSSSRD-------------DTLKVIDLRTKEIRQTFSAEGFKC--------ASDWTRVVFS 396 (459)
T ss_pred eecCcceeeEeeccCCeEEeeecCC-------------CceeeeecccccEEEEeecccccc--------ccccceeEEC
Confidence 3334567899999999999877421 257788999988887654221100 0011238899
Q ss_pred cCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCce-eeeec--CcccceeeEcCCCcEEEEE
Q 007338 251 ADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPE-ILHKL--DLRFRSVSWCDDSLALVNE 316 (607)
Q Consensus 251 pdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~l~~~--~~~~~~~~ws~Dg~~l~~~ 316 (607)
||+. |+.+- .....+++|+. ++| +.. .+... +..+....|+|-|..++..
T Consensus 397 pd~~----YvaAG---------S~dgsv~iW~v--~tg-KlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 397 PDGS----YVAAG---------SADGSVYIWSV--FTG-KLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred CCCc----eeeec---------cCCCcEEEEEc--cCc-eEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 9998 44322 22346788876 555 333 23222 2247788999988876554
No 214
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=87.31 E-value=33 Score=34.84 Aligned_cols=52 Identities=15% Similarity=0.186 Sum_probs=37.9
Q ss_pred ceEEEEeC-CC-CeeecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee
Q 007338 157 AQLVLGSL-DG-TAKDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (607)
Q Consensus 157 ~~l~~~~~-~g-~~~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (607)
..+.++++ +| ....|..+..+.+++|+-||..++-+..+ .+|.+||...+++
T Consensus 154 n~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckD-------------KkvRv~dpr~~~~ 207 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKD-------------KKVRVIDPRRGTV 207 (472)
T ss_pred ceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeeccc-------------ceeEEEcCCCCcE
Confidence 35666777 66 45567767777899999999998876432 3788999887743
No 215
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.15 E-value=41 Score=35.01 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=34.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCe-EEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNST-LLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~-~l~~ 103 (607)
.+....|+|+++.++.+..- +....+| |+++...+ -++.+.+ .+....|+|... +++.
T Consensus 112 pv~~~~f~~~d~t~l~s~sD-------d~v~k~~--d~s~a~v~~~l~~htD-----YVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSD-------DKVVKYW--DLSTAYVQAELSGHTD-----YVRCGDISPANDHIVVT 171 (487)
T ss_pred ceeEEEecccCCeEEEecCC-------CceEEEE--EcCCcEEEEEecCCcc-----eeEeeccccCCCeEEEe
Confidence 46778999999887666531 3444444 66665542 2333222 366888998755 5444
No 216
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=87.09 E-value=2.6 Score=43.51 Aligned_cols=165 Identities=10% Similarity=0.074 Sum_probs=85.2
Q ss_pred cceEEEEeCCC--C---eeec---CCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccC
Q 007338 156 TAQLVLGSLDG--T---AKDF---GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDL 227 (607)
Q Consensus 156 ~~~l~~~~~~g--~---~~~l---t~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 227 (607)
+.-+-++|+++ . +.+| +...++.+..++|||+.|++-.. .+.|-+||+..-..+.-.++
T Consensus 439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe-------------astlsiWDLAapTprikael 505 (705)
T KOG0639|consen 439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE-------------ASTLSIWDLAAPTPRIKAEL 505 (705)
T ss_pred CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-------------cceeeeeeccCCCcchhhhc
Confidence 44555667633 2 2233 23346678999999999987642 24788999986654432221
Q ss_pred CCCCCCCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEc
Q 007338 228 PPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWC 307 (607)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws 307 (607)
+ +.......++.|||.+ |+|.+..++. |.+||. -+-...+.+....-..+.+..|
T Consensus 506 t----------ssapaCyALa~spDak--vcFsccsdGn-----------I~vwDL--hnq~~VrqfqGhtDGascIdis 560 (705)
T KOG0639|consen 506 T----------SSAPACYALAISPDAK--VCFSCCSDGN-----------IAVWDL--HNQTLVRQFQGHTDGASCIDIS 560 (705)
T ss_pred C----------CcchhhhhhhcCCccc--eeeeeccCCc-----------EEEEEc--ccceeeecccCCCCCceeEEec
Confidence 1 1223445688899987 7777665443 334442 0100112222222234567777
Q ss_pred CCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEe
Q 007338 308 DDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKI 371 (607)
Q Consensus 308 ~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~ 371 (607)
+||..|.... -.+.+-..|+..+ +.+..+++...+ +.+...|.+..|++.-
T Consensus 561 ~dGtklWTGG----lDntvRcWDlreg----rqlqqhdF~SQI-----fSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 561 KDGTKLWTGG----LDNTVRCWDLREG----RQLQQHDFSSQI-----FSLGYCPTGDWLAVGM 611 (705)
T ss_pred CCCceeecCC----Cccceeehhhhhh----hhhhhhhhhhhh-----eecccCCCccceeeec
Confidence 7776543321 0112222355441 333333333211 1156678888776643
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.09 E-value=22 Score=38.45 Aligned_cols=58 Identities=17% Similarity=0.318 Sum_probs=43.0
Q ss_pred CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEE
Q 007338 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
...+.+..+.|||..|+... ...|+++|+..|.. +.|-.++ +.+-.++||.||+.+..
T Consensus 12 ~hci~d~afkPDGsqL~lAA-----------g~rlliyD~ndG~llqtLKgHK-----DtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAA-----------GSRLLVYDTSDGTLLQPLKGHK-----DTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred ccchheeEECCCCceEEEec-----------CCEEEEEeCCCccccccccccc-----ceEEEEEEccCCceecc
Confidence 33688999999999998765 36899999987754 4443332 23668899999888664
No 218
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=87.06 E-value=3.3 Score=45.58 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=28.7
Q ss_pred CceeEEEEECCCCceeeccc-CCCccccccccceEEecCCeEEEEE
Q 007338 60 CKLRVWIADAETGEAKPLFE-SPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 60 ~~~~L~v~d~~~g~~~~lt~-~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+...|.++|..+.+..+... +.+ .+.++.||||||+++.+
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisa 594 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISA 594 (910)
T ss_pred CceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEe
Confidence 45789999998776544432 222 26789999999998875
No 219
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.04 E-value=17 Score=35.57 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=43.4
Q ss_pred CeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec--ccCCCccccccccceEEecC
Q 007338 20 PEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL--FESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 20 ~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l--t~~~~~~~~~~~~~~~Wspd 97 (607)
+.+++++... .++...|+||.+.|+-+.+ .-.+|.-++++|.-.+.+ +..++ ...+.|.-+
T Consensus 77 ~akpi~g~~~--nvS~LTynp~~rtLFav~n---------~p~~iVElt~~GdlirtiPL~g~~D------pE~Ieyig~ 139 (316)
T COG3204 77 DAKPILGETA--NVSSLTYNPDTRTLFAVTN---------KPAAIVELTKEGDLIRTIPLTGFSD------PETIEYIGG 139 (316)
T ss_pred eccccccccc--cccceeeCCCcceEEEecC---------CCceEEEEecCCceEEEecccccCC------hhHeEEecC
Confidence 3445654433 4999999999998755543 346888888876555544 22222 457788877
Q ss_pred CeEEEE
Q 007338 98 STLLIF 103 (607)
Q Consensus 98 ~~~l~~ 103 (607)
+++++.
T Consensus 140 n~fvi~ 145 (316)
T COG3204 140 NQFVIV 145 (316)
T ss_pred CEEEEE
Confidence 776665
No 220
>PRK13615 lipoprotein LpqB; Provisional
Probab=87.02 E-value=51 Score=35.98 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=32.1
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCC
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNS 98 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~ 98 (607)
...+..|+||+.+|++.. ...|++-... +..+.+..... +..+.|.+++
T Consensus 336 ~~s~avS~dg~~~A~v~~----------~~~l~vg~~~-~~~~~~~~~~~------Lt~PS~d~~g 384 (557)
T PRK13615 336 ADAATLSADGRQAAVRNA----------SGVWSVGDGD-RDAVLLDTRPG------LVAPSLDAQG 384 (557)
T ss_pred cccceEcCCCceEEEEcC----------CceEEEecCC-CcceeeccCCc------cccCcCcCCC
Confidence 378999999999999842 1356665443 45555532221 5678888777
No 221
>PRK13613 lipoprotein LpqB; Provisional
Probab=86.66 E-value=51 Score=36.41 Aligned_cols=53 Identities=17% Similarity=0.102 Sum_probs=35.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-----eecccCCCccccccccceEEecCCe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-----KPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-----~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
....+..|+||+.+|++.. ....|++-.+.++.. +.+.... .+..+.|..++.
T Consensus 364 ~~~s~avS~~g~~~A~v~~---------~~~~l~vg~~~~~~~~~~~~~~~~~~~------~Lt~PS~d~~g~ 421 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISA---------DGDSVYVGSLTPGASIGVHSWGVTADG------RLTSPSWDGRGD 421 (599)
T ss_pred CccceEEcCCCceEEEEcC---------CCcEEEEeccCCCCccccccceeeccC------cccCCcCcCCCC
Confidence 5678999999999999853 246888877644432 2232211 156788887774
No 222
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.58 E-value=6.7 Score=44.79 Aligned_cols=232 Identities=14% Similarity=0.183 Sum_probs=115.2
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCE---EEEEeecCcccccCCCceeEEEEECC----CCceeecc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR---IAFSVRVDEEDNVSSCKLRVWIADAE----TGEAKPLF 78 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~---laf~~~~~~~~~~~~~~~~L~v~d~~----~g~~~~lt 78 (607)
+|+..+..+ +.+..+.+..+....+.....|++-|.. |+..... +| +|-+||++ +++...|.
T Consensus 42 Eifeld~~~--~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~e-------dG--~I~ly~p~~~~~~~~~~~la 110 (1049)
T KOG0307|consen 42 EIFELDFSD--ESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLE-------DG--NIVLYDPASIIANASEEVLA 110 (1049)
T ss_pred ceeeecccC--ccccccccccccccccceeeeecccCCCccceeecccc-------CC--ceEEecchhhccCcchHHHh
Confidence 455566542 2333456666666667899999999988 2222211 33 55555654 33333332
Q ss_pred cCCCccccccccceEEecCCe-EEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccc
Q 007338 79 ESPDICLNAVFGSFVWVNNST-LLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTA 157 (607)
Q Consensus 79 ~~~~~~~~~~~~~~~Wspd~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (607)
.... ....+..+.|.+.+. ++.. |. ..+
T Consensus 111 ~~~~--h~G~V~gLDfN~~q~nlLAS--------------------------Ga-----------------------~~g 139 (1049)
T KOG0307|consen 111 TKSK--HTGPVLGLDFNPFQGNLLAS--------------------------GA-----------------------DDG 139 (1049)
T ss_pred hhcc--cCCceeeeeccccCCceeec--------------------------cC-----------------------CCC
Confidence 1111 111244566666544 4432 10 135
Q ss_pred eEEEEeCCCCeeecCC-----CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCC
Q 007338 158 QLVLGSLDGTAKDFGT-----PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAED 232 (607)
Q Consensus 158 ~l~~~~~~g~~~~lt~-----~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~ 232 (607)
+|+++|+....++.+. .+.+..++|...-.+|+.....+ ....+||++.. +++..+.
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s------------g~~~iWDlr~~--~pii~ls---- 201 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS------------GRAVIWDLRKK--KPIIKLS---- 201 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC------------CCceeccccCC--Ccccccc----
Confidence 7777777442222221 23455677876666776554321 25667888755 2332210
Q ss_pred CCcccccccCCCCcceeecCCCceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcE
Q 007338 233 IPVCYNSVREGMRSISWRADKPSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLA 312 (607)
Q Consensus 233 ~~~~~~~~~~~~~~~~wspdg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~ 312 (607)
.-+.+.....+.|-||..-.|+ +...+...+ .+-.||. .+.-...+.++.+...+-.+.|++.+-.
T Consensus 202 ----~~~~~~~~S~l~WhP~~aTql~-~As~dd~~P--------viqlWDl-R~assP~k~~~~H~~GilslsWc~~D~~ 267 (1049)
T KOG0307|consen 202 ----DTPGRMHCSVLAWHPDHATQLL-VASGDDSAP--------VIQLWDL-RFASSPLKILEGHQRGILSLSWCPQDPR 267 (1049)
T ss_pred ----cCCCccceeeeeeCCCCceeee-eecCCCCCc--------eeEeecc-cccCCchhhhcccccceeeeccCCCCch
Confidence 0001122345999999875443 332222221 2333332 1111122334445555678899987644
Q ss_pred EEEEEeccccceEEEEEcCCCC
Q 007338 313 LVNETWYKTSQTRTWLVCPGSK 334 (607)
Q Consensus 313 l~~~~~~~~~~~~l~~~dl~~~ 334 (607)
++..... .++++..+..++
T Consensus 268 lllSsgk---D~~ii~wN~~tg 286 (1049)
T KOG0307|consen 268 LLLSSGK---DNRIICWNPNTG 286 (1049)
T ss_pred hhhcccC---CCCeeEecCCCc
Confidence 3333221 247888888874
No 223
>COG4099 Predicted peptidase [General function prediction only]
Probab=86.54 E-value=0.84 Score=44.16 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=27.9
Q ss_pred CCCceEEEEEEcCCCCCCCCCCCCCEEEEeccC
Q 007338 490 KDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPE 522 (607)
Q Consensus 490 ~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~ 522 (607)
.-|.+|...||-|.+++++||| .|++||.|+.
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky-~PLvlfLHga 200 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKY-YPLVLFLHGA 200 (387)
T ss_pred ccCceeeEEEecccccCCCCcc-ccEEEEEecC
Confidence 3678999999999999999998 7889988853
No 224
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=85.57 E-value=21 Score=35.02 Aligned_cols=54 Identities=7% Similarity=0.203 Sum_probs=37.9
Q ss_pred cceEEEEeCCCC-eeecCCC----CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 156 TAQLVLGSLDGT-AKDFGTP----AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 156 ~~~l~~~~~~g~-~~~lt~~----~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
...+|++++.|+ ++.++.+ +.+....+||.|.+|+-...+ ..+|-+...+|+..
T Consensus 414 sntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED-------------~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 414 SNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGED-------------GVLYCFSVLSGKLE 472 (508)
T ss_pred CCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccC-------------cEEEEEEeecCcee
Confidence 467889999885 4556543 345578999999999887532 26788887766544
No 225
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=85.55 E-value=24 Score=34.07 Aligned_cols=68 Identities=9% Similarity=0.100 Sum_probs=40.1
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
++.|.++.. .++..+|.||.+.|+.+.+ ....|+.++++|.-.+++.-...+. ...+.+..++++
T Consensus 14 ~~~l~g~~~--e~SGLTy~pd~~tLfaV~d---------~~~~i~els~~G~vlr~i~l~g~~D----~EgI~y~g~~~~ 78 (248)
T PF06977_consen 14 AKPLPGILD--ELSGLTYNPDTGTLFAVQD---------EPGEIYELSLDGKVLRRIPLDGFGD----YEGITYLGNGRY 78 (248)
T ss_dssp EEE-TT--S---EEEEEEETTTTEEEEEET---------TTTEEEEEETT--EEEEEE-SS-SS----EEEEEE-STTEE
T ss_pred eeECCCccC--CccccEEcCCCCeEEEEEC---------CCCEEEEEcCCCCEEEEEeCCCCCC----ceeEEEECCCEE
Confidence 445554333 3899999999999877764 3578999998744444442111111 457788877776
Q ss_pred EEE
Q 007338 101 LIF 103 (607)
Q Consensus 101 l~~ 103 (607)
++.
T Consensus 79 vl~ 81 (248)
T PF06977_consen 79 VLS 81 (248)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 226
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=85.37 E-value=2.1 Score=46.91 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=44.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
++++..|||||++|+-.+. ...|.+||+.+|...-....+.. ...+.+||++.+|..+
T Consensus 578 ritd~~FS~DgrWlisasm----------D~tIr~wDlpt~~lID~~~vd~~-----~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASM----------DSTIRTWDLPTGTLIDGLLVDSP-----CTSLSFSPNGDFLATV 635 (910)
T ss_pred ceeeeEeCCCCcEEEEeec----------CCcEEEEeccCcceeeeEecCCc-----ceeeEECCCCCEEEEE
Confidence 6999999999999988775 36789999999875432222222 3478899999998876
No 227
>PLN02511 hydrolase
Probab=85.18 E-value=2.5 Score=44.09 Aligned_cols=97 Identities=11% Similarity=-0.006 Sum_probs=51.4
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
..++..++..||..+....+.+..-..... -|+||..|+- .|+... .+.......+.++||.|+.
T Consensus 70 ~~~re~l~~~DG~~~~ldw~~~~~~~~~~~--~p~vvllHG~-----------~g~s~~--~y~~~~~~~~~~~g~~vv~ 134 (388)
T PLN02511 70 RYRRECLRTPDGGAVALDWVSGDDRALPAD--APVLILLPGL-----------TGGSDD--SYVRHMLLRARSKGWRVVV 134 (388)
T ss_pred ceeEEEEECCCCCEEEEEecCcccccCCCC--CCEEEEECCC-----------CCCCCC--HHHHHHHHHHHHCCCEEEE
Confidence 445556777899888754433321111111 2888887742 122211 0001123456789999998
Q ss_pred CCCCceeccCCCC---chhhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIGEGLWS---NWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g~g~~~---~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
.+. +|.|+.. .+.+.....+|+...+++|..+
T Consensus 135 -~d~--rG~G~s~~~~~~~~~~~~~~Dl~~~i~~l~~~ 169 (388)
T PLN02511 135 -FNS--RGCADSPVTTPQFYSASFTGDLRQVVDHVAGR 169 (388)
T ss_pred -Eec--CCCCCCCCCCcCEEcCCchHHHHHHHHHHHHH
Confidence 544 4444431 1223334467888888888764
No 228
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=85.08 E-value=6.7 Score=42.56 Aligned_cols=62 Identities=6% Similarity=0.042 Sum_probs=40.6
Q ss_pred CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCccccccccceEEecCCeEEEEE
Q 007338 30 GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 30 ~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
...++..+|||+|+++|--.- .-...+-+++++... .-.+.+++-. +...+|+|.+++++..
T Consensus 78 Rk~~t~vAfS~~GryvatGEc--------G~~pa~kVw~la~h~vVAEfvdHKY~-----vtcvaFsp~~kyvvSV 140 (1080)
T KOG1408|consen 78 RKPLTCVAFSQNGRYVATGEC--------GRTPASKVWSLAFHGVVAEFVDHKYN-----VTCVAFSPGNKYVVSV 140 (1080)
T ss_pred CcceeEEEEcCCCcEEEeccc--------CCCccceeeeeccccchhhhhhcccc-----ceeeeecCCCcEEEee
Confidence 336889999999999876432 234566777887633 3334333321 4578899999887764
No 229
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.99 E-value=48 Score=36.75 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=34.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~ 103 (607)
.+-+..||.++ .|+-.+. +....|| ++...+-..++.+.+ .+..++|.|- .++++.
T Consensus 371 DILDlSWSKn~-fLLSSSM--------DKTVRLW--h~~~~~CL~~F~Hnd-----fVTcVaFnPvDDryFiS 427 (712)
T KOG0283|consen 371 DILDLSWSKNN-FLLSSSM--------DKTVRLW--HPGRKECLKVFSHND-----FVTCVAFNPVDDRYFIS 427 (712)
T ss_pred hheecccccCC-eeEeccc--------cccEEee--cCCCcceeeEEecCC-----eeEEEEecccCCCcEee
Confidence 36788999777 4444433 4455566 565556556654433 3678899986 555443
No 230
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=84.98 E-value=4.1 Score=42.71 Aligned_cols=95 Identities=12% Similarity=-0.088 Sum_probs=53.3
Q ss_pred ceEEEEEECC-CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeE--
Q 007338 481 QKEMIKYQRK-DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFA-- 557 (607)
Q Consensus 481 ~~e~i~~~s~-DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~-- 557 (607)
..+.++|.|. -|.+...+||.|++|+ .++| |||++.+++. +.+ ..........|.++|.+
T Consensus 179 ~~~~~~~~S~~Lg~~r~v~VY~P~~y~-~~~~--PvlyllDG~~------w~~--------~~~~~~~ld~li~~g~i~P 241 (411)
T PRK10439 179 PAKEIIWKSERLGNSRRVWIYTTGDAA-PEER--PLAILLDGQF------WAE--------SMPVWPALDSLTHRGQLPP 241 (411)
T ss_pred ceEEEEEEccccCCceEEEEEECCCCC-CCCC--CEEEEEECHH------hhh--------cCCHHHHHHHHHHcCCCCc
Confidence 4577788775 6778999999999997 3545 9999876431 100 00001123467778833
Q ss_pred --EEeCCCCceeccCCC--CchhhHHHHhhcHHHHHHHH
Q 007338 558 --VLAGPSIPIIGEGLW--SNWFQVQRLLLKKLFDVEWL 592 (607)
Q Consensus 558 --Vl~~~~~~~~g~g~~--~~~~~~~~~~~~~~~~v~~~ 592 (607)
|+...+........+ .+..|.+.++++++-.|+.-
T Consensus 242 ~ivV~id~~~~~~R~~el~~~~~f~~~l~~eLlP~I~~~ 280 (411)
T PRK10439 242 AVYLLIDAIDTTHRSQELPCNADFWLAVQQELLPQVRAI 280 (411)
T ss_pred eEEEEECCCCcccccccCCchHHHHHHHHHHHHHHHHHh
Confidence 344122111111112 35567677777776666553
No 231
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=84.80 E-value=2.5 Score=41.34 Aligned_cols=94 Identities=15% Similarity=0.137 Sum_probs=53.3
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
....--+++.+|.++.....+|.+-. + |.-+|+++|+- |.-..+. +....-.||..||+|+.
T Consensus 26 ~~~~~~~~n~rG~~lft~~W~p~~~~--~--pr~lv~~~HG~------------g~~~s~~--~~~~a~~l~~~g~~v~a 87 (313)
T KOG1455|consen 26 TYSESFFTNPRGAKLFTQSWLPLSGT--E--PRGLVFLCHGY------------GEHSSWR--YQSTAKRLAKSGFAVYA 87 (313)
T ss_pred ceeeeeEEcCCCCEeEEEecccCCCC--C--CceEEEEEcCC------------cccchhh--HHHHHHHHHhCCCeEEE
Confidence 34445667899999999999997522 2 22445544421 1100110 01234689999999997
Q ss_pred CCCCceecc----CCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIGE----GLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g~----g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
-+ ..|- |...+-.-...+++|+..=++.+..+
T Consensus 88 -~D--~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~ 123 (313)
T KOG1455|consen 88 -ID--YEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKER 123 (313)
T ss_pred -ee--ccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhc
Confidence 33 2342 33222222256678888777765554
No 232
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=84.73 E-value=3.8 Score=45.67 Aligned_cols=64 Identities=23% Similarity=0.400 Sum_probs=45.0
Q ss_pred CcccceEEccCCCEEEEEeec-CcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 31 AKINFVSWSPDGKRIAFSVRV-DEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~-~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..++.|..+|+|+.++|+... +.. .......+|+.|... .+.++.... ...+.|+||++++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~d~~~--~~~~~~~~~------~~~~~~spdg~~~~~~ 77 (620)
T COG1506 13 ARVSDPRVSPPGGRLAYILTGLDFL--KPLYKSSLWVSDGKT--VRLLTFGGG------VSELRWSPDGSVLAFV 77 (620)
T ss_pred hcccCcccCCCCceeEEeecccccc--ccccccceEEEeccc--ccccccCCc------ccccccCCCCCEEEEE
Confidence 368899999999999999874 111 125668899987665 333432221 5688999999988875
No 233
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=84.73 E-value=1 Score=42.30 Aligned_cols=41 Identities=20% Similarity=0.134 Sum_probs=27.5
Q ss_pred hHHHhc-cCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 548 SLIFLA-RRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 548 ~q~la~-~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
...+|+ +||+|+. + .+. ..+...+ .+.++|+.++++||++.
T Consensus 21 ~~~la~~~g~~v~~-~---~Yr--l~p~~~~-p~~~~D~~~a~~~l~~~ 62 (211)
T PF07859_consen 21 AARLAAERGFVVVS-I---DYR--LAPEAPF-PAALEDVKAAYRWLLKN 62 (211)
T ss_dssp HHHHHHHHTSEEEE-E---E-----TTTSST-THHHHHHHHHHHHHHHT
T ss_pred HHHHHhhccEEEEE-e---ecc--ccccccc-cccccccccceeeeccc
Confidence 345564 9999997 2 222 1233233 57799999999999998
No 234
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=83.87 E-value=25 Score=36.66 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=35.1
Q ss_pred cceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEee-eccccccccCCCCCCeeeCCCCCEEEEEee
Q 007338 301 FRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF-DRVFENVYSDPGSPMMTRTSTGTNVIAKIK 372 (607)
Q Consensus 301 ~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~ 372 (607)
...+.|||-...|+.....+ .+|+++|..+.. ...+|+ +..... +.++++|-++++...
T Consensus 211 ~~gicfspsne~l~vsVG~D---kki~~yD~~s~~-s~~~l~y~~Plst---------vaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYD---KKINIYDIRSQA-STDRLTYSHPLST---------VAFSECGTYLCAGNS 270 (673)
T ss_pred cCcceecCCccceEEEeccc---ceEEEeeccccc-ccceeeecCCcce---------eeecCCceEEEeecC
Confidence 34588999876543332222 489999987742 234443 333333 778888887766543
No 235
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=83.41 E-value=4.9 Score=40.64 Aligned_cols=97 Identities=18% Similarity=0.038 Sum_probs=54.7
Q ss_pred eEEEEEECC-CCceEEEEEEcCCCCCC-CCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 482 KEMIKYQRK-DGVPLTATLYLPPGYDQ-SKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 482 ~e~i~~~s~-DG~~i~g~l~~P~~~~~-~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
...+++... .+.++.-+++.|..... --.|++|+||+-||- |+. +..+ -|-.+.||+.||+|.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~-------------Gs~-~~~f-~~~A~~lAs~Gf~Va 102 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGS-------------GSY-VTGF-AWLAEHLASYGFVVA 102 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCC-------------CCC-ccch-hhhHHHHhhCceEEE
Confidence 344444433 25678888888876542 113678999997752 221 2212 133689999999999
Q ss_pred eCCCCceeccCCC----Cc----h--hhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLW----SN----W--FQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~----~~----~--~~~~~~~~~~~~~v~~~~~~ 595 (607)
. +.-|....|+- .+ . .| .....|+-.-+++|.+.
T Consensus 103 ~-~~hpgs~~~~~~~~~~~~~~~~p~~~-~erp~dis~lLd~L~~~ 146 (365)
T COG4188 103 A-PDHPGSNAGGAPAAYAGPGSYAPAEW-WERPLDISALLDALLQL 146 (365)
T ss_pred e-ccCCCcccccCChhhcCCcccchhhh-hcccccHHHHHHHHHHh
Confidence 7 33332222221 11 1 22 23355666666667666
No 236
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=83.17 E-value=5.6 Score=38.04 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=42.4
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
.++..+|||.|++||-.+- +...-|| .-.+++-.-+...++ ...++...+||++|.+|...+
T Consensus 63 sVRsvAwsp~g~~La~aSF--------D~t~~Iw--~k~~~efecv~~lEG--HEnEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 63 SVRSVAWSPHGRYLASASF--------DATVVIW--KKEDGEFECVATLEG--HENEVKCVAWSASGNYLATCS 124 (312)
T ss_pred eeeeeeecCCCcEEEEeec--------cceEEEe--ecCCCceeEEeeeec--cccceeEEEEcCCCCEEEEee
Confidence 5889999999999888764 4445555 344566555443322 223467899999999988764
No 237
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.74 E-value=22 Score=33.50 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=35.0
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+.++..|-|...++-- .+..++++||+++|+..+-.....+ .+..++|..+..+++..
T Consensus 62 VlD~~~s~Dnskf~s~----------GgDk~v~vwDV~TGkv~Rr~rgH~a----qVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 62 VLDAALSSDNSKFASC----------GGDKAVQVWDVNTGKVDRRFRGHLA----QVNTVRFNEESSVVASG 119 (307)
T ss_pred eeeccccccccccccC----------CCCceEEEEEcccCeeeeecccccc----eeeEEEecCcceEEEec
Confidence 4445555555554321 3557899999999987444333322 25667777667776654
No 238
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=82.63 E-value=10 Score=40.99 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=44.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceee-cccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP-LFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~-lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+.....||+|+.||-...... ..-..|+++++++-...+ |-.++- .+..+.||||+++|...
T Consensus 527 Ev~~l~~s~~gnliASaCKS~~-----~ehAvI~lw~t~~W~~~~~L~~HsL-----TVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 527 EVYALAISPTGNLIASACKSSL-----KEHAVIRLWNTANWLQVQELEGHSL-----TVTRLAFSPDGRYLLSV 590 (764)
T ss_pred eEEEEEecCCCCEEeehhhhCC-----ccceEEEEEeccchhhhheecccce-----EEEEEEECCCCcEEEEe
Confidence 5788999999999888764321 334679999998754433 433322 26689999999987765
No 239
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=82.24 E-value=1.6 Score=41.72 Aligned_cols=74 Identities=15% Similarity=0.185 Sum_probs=45.1
Q ss_pred eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCCC
Q 007338 494 PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLWS 573 (607)
Q Consensus 494 ~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~~ 573 (607)
..+..|+-|.. ++ .| |+|++.|+- .-++.++..-.+..|++||+|+. |.+-.. -+
T Consensus 32 PkpLlI~tP~~--~G-~y--PVilF~HG~---------------~l~ns~Ys~lL~HIASHGfIVVA-PQl~~~-~~--- 86 (307)
T PF07224_consen 32 PKPLLIVTPSE--AG-TY--PVILFLHGF---------------NLYNSFYSQLLAHIASHGFIVVA-PQLYTL-FP--- 86 (307)
T ss_pred CCCeEEecCCc--CC-Cc--cEEEEeech---------------hhhhHHHHHHHHHHhhcCeEEEe-chhhcc-cC---
Confidence 46677777873 33 35 999997731 11222222236789999999998 665221 11
Q ss_pred chhhHHHHhhcHHHHHHHHHH
Q 007338 574 NWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 574 ~~~~~~~~~~~~~~~v~~~~~ 594 (607)
--++..+++...-++||-+
T Consensus 87 --p~~~~Ei~~aa~V~~WL~~ 105 (307)
T PF07224_consen 87 --PDGQDEIKSAASVINWLPE 105 (307)
T ss_pred --CCchHHHHHHHHHHHHHHh
Confidence 1224557777888888864
No 240
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=82.06 E-value=32 Score=33.60 Aligned_cols=67 Identities=18% Similarity=0.346 Sum_probs=38.0
Q ss_pred eeecCCCCCcccceEEcc-CCCEEEEEeecCcccccCCCceeEEEEECCCCce--eecccCCCccccccccceEEecCCe
Q 007338 23 EVHGYPDGAKINFVSWSP-DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA--KPLFESPDICLNAVFGSFVWVNNST 99 (607)
Q Consensus 23 ~lt~~~~~~~~~~~~~SP-DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~--~~lt~~~~~~~~~~~~~~~Wspd~~ 99 (607)
.|+.-|+. .++...||| ....|+-.+- +++-.+|-+... |.. +.+..+. ..+-...|+.||.
T Consensus 21 ev~~pP~D-sIS~l~FSP~~~~~~~A~SW--------D~tVR~wevq~~-g~~~~ka~~~~~-----~PvL~v~Wsddgs 85 (347)
T KOG0647|consen 21 EVPNPPED-SISALAFSPQADNLLAAGSW--------DGTVRIWEVQNS-GQLVPKAQQSHD-----GPVLDVCWSDDGS 85 (347)
T ss_pred ecCCCccc-chheeEeccccCceEEeccc--------CCceEEEEEecC-CcccchhhhccC-----CCeEEEEEccCCc
Confidence 44444444 799999999 3333323322 566677766554 332 2221111 1255789999988
Q ss_pred EEEEE
Q 007338 100 LLIFT 104 (607)
Q Consensus 100 ~l~~~ 104 (607)
.+|..
T Consensus 86 kVf~g 90 (347)
T KOG0647|consen 86 KVFSG 90 (347)
T ss_pred eEEee
Confidence 77763
No 241
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=81.41 E-value=4.6 Score=40.38 Aligned_cols=93 Identities=18% Similarity=0.071 Sum_probs=52.2
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
....-.|.+.||..+..+...+..-. + -+||.+|+. + .+...+......|+++||.|+.
T Consensus 8 ~~~~~~~~~~d~~~~~~~~~~~~~~~--~----g~Vvl~HG~----~-----------Eh~~ry~~la~~l~~~G~~V~~ 66 (298)
T COG2267 8 TRTEGYFTGADGTRLRYRTWAAPEPP--K----GVVVLVHGL----G-----------EHSGRYEELADDLAARGFDVYA 66 (298)
T ss_pred ccccceeecCCCceEEEEeecCCCCC--C----cEEEEecCc----h-----------HHHHHHHHHHHHHHhCCCEEEE
Confidence 34456788899999999998887411 1 566666642 0 1111112336899999999997
Q ss_pred CCCCceec-c--CCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 561 GPSIPIIG-E--GLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 561 ~~~~~~~g-~--g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
-+-+-.| + |..++-.-.++.+.|+..-|+.++..
T Consensus 67 -~D~RGhG~S~r~~rg~~~~f~~~~~dl~~~~~~~~~~ 103 (298)
T COG2267 67 -LDLRGHGRSPRGQRGHVDSFADYVDDLDAFVETIAEP 103 (298)
T ss_pred -ecCCCCCCCCCCCcCCchhHHHHHHHHHHHHHHHhcc
Confidence 4432222 2 22222221245555555555555543
No 242
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=81.21 E-value=27 Score=35.82 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=23.4
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
..+..+.|||.-..|+.++..+ ..+.+||+.
T Consensus 317 dev~~V~WSPh~etvLASSg~D------------~rl~vWDls 347 (422)
T KOG0264|consen 317 DEVFQVEWSPHNETVLASSGTD------------RRLNVWDLS 347 (422)
T ss_pred cceEEEEeCCCCCceeEecccC------------CcEEEEecc
Confidence 3566899999999998887532 367788886
No 243
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=81.00 E-value=2.2 Score=46.57 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=46.4
Q ss_pred EEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCc--eec--cC
Q 007338 495 LTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIP--IIG--EG 570 (607)
Q Consensus 495 i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~--~~g--~g 570 (607)
+.=-|+.|.+...+. ++||+||+|||-|..| +.. . ..+....+++.++.+|+. .+.+ ..| ..
T Consensus 109 L~LnI~~P~~~~~~~--~lPV~v~ihGG~f~~G--------~~~-~--~~~~~~~~~~~~~vivVt-~nYRlg~~Gfl~~ 174 (535)
T PF00135_consen 109 LYLNIYTPSNASSNS--KLPVMVWIHGGGFMFG--------SGS-F--PPYDGASLAASKDVIVVT-INYRLGAFGFLSL 174 (535)
T ss_dssp -EEEEEEETSSSSTT--SEEEEEEE--STTTSS--------CTT-S--GGGHTHHHHHHHTSEEEE-E----HHHHH-BS
T ss_pred HHHhhhhcccccccc--ccceEEEeecccccCC--------Ccc-c--ccccccccccCCCEEEEE-ecccccccccccc
Confidence 555677898866543 5699999998755433 211 0 011224678889999998 3321 012 12
Q ss_pred CCCchhhHHHHhhcHHHHHHHHHH
Q 007338 571 LWSNWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~v~~~~~ 594 (607)
.+....-+-.-+.|++.|.+|+-+
T Consensus 175 ~~~~~~~gN~Gl~Dq~~AL~WV~~ 198 (535)
T PF00135_consen 175 GDLDAPSGNYGLLDQRLALKWVQD 198 (535)
T ss_dssp SSTTSHBSTHHHHHHHHHHHHHHH
T ss_pred cccccCchhhhhhhhHHHHHHHHh
Confidence 221111122347789999999754
No 244
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=80.71 E-value=4.7 Score=41.00 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=52.1
Q ss_pred EECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCc--cc-------------cCCCcCCCCCCchhHHH
Q 007338 487 YQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQ--VR-------------GSPNEFSGMTPTSSLIF 551 (607)
Q Consensus 487 ~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~--~~-------------g~p~~~~~~~~~~~q~l 551 (607)
|++.||..|..+.+.|. ++ ..+||.+|+- +++... +. -.+..|..+.-...+.|
T Consensus 2 ~~~~~g~~l~~~~~~~~--~~-----kg~v~i~HG~----~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l 70 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVK--NA-----IGIIVLIHGL----KSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENF 70 (332)
T ss_pred ccCCCCCeEEEeeeecc--CC-----eEEEEEECCC----chhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHH
Confidence 67889999999998885 22 2566666642 222210 00 00001100001236899
Q ss_pred hccCeEEEeCCCCceecc--CCC---CchhhHHHHhhcHHHHHHHHHH
Q 007338 552 LARRFAVLAGPSIPIIGE--GLW---SNWFQVQRLLLKKLFDVEWLIQ 594 (607)
Q Consensus 552 a~~GY~Vl~~~~~~~~g~--g~~---~~~~~~~~~~~~~~~~v~~~~~ 594 (607)
+++||.|+. .+.+..|. |.. ++-.-...+++|+...++.+..
T Consensus 71 ~~~G~~V~~-~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~ 117 (332)
T TIGR01607 71 NKNGYSVYG-LDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRIND 117 (332)
T ss_pred HHCCCcEEE-ecccccCCCccccccccchhhHHHHHHHHHHHHHHhhh
Confidence 999999998 65544441 211 1112236677777777776643
No 245
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.46 E-value=17 Score=36.34 Aligned_cols=36 Identities=11% Similarity=-0.031 Sum_probs=23.4
Q ss_pred eeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 294 l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
|...+.-+..++|+|.|++|++-.. +. .|-+.|+.+
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaD--Dk--tlrvwdl~~ 365 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCAD--DK--TLRVWDLKN 365 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEec--CC--cEEEEEecc
Confidence 3345556788999999998876542 22 344446665
No 246
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=80.24 E-value=24 Score=35.82 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=77.4
Q ss_pred ccceeeEcCCC-cEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEEEeeeccC-c
Q 007338 300 RFRSVSWCDDS-LALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIAKIKKEND-E 377 (607)
Q Consensus 300 ~~~~~~ws~Dg-~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~-~ 377 (607)
+.-.++|...| ..++.+.+ ..|+.++++++ ..+.+.+..-...+... +.+..++ ...|||....... .
T Consensus 116 RPLGl~f~~~ggdL~VaDAY-----lGL~~V~p~g~--~a~~l~~~~~G~~~kf~--N~ldI~~-~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAY-----LGLLKVGPEGG--LAELLADEAEGKPFKFL--NDLDIDP-EGVVYFTDSSSKYDR 185 (376)
T ss_pred CcceEEeccCCCeEEEEecc-----eeeEEECCCCC--cceeccccccCeeeeec--CceeEcC-CCeEEEeccccccch
Confidence 44567887776 55666543 58999999984 34444321111000000 0155666 4457777654321 2
Q ss_pred CcEEEEeecCCCCCCCcceeEeeecCCCCeeEEeecCCcccceeeeeeecCCCcccccccCCEEEEEeecccccceEEEE
Q 007338 378 QIYILLNGRGFTPEGNIPFLDLFDINTGSKERIWESNREKYFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHIL 457 (607)
Q Consensus 378 ~~~l~~~~~g~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~ 457 (607)
...++.+-.| ....| |.++|..+..++.|.+.- .... ..++|+|++.++++-.+..+-..+|+-
T Consensus 186 rd~~~a~l~g--~~~GR--l~~YD~~tK~~~VLld~L-----~F~N-------GlaLS~d~sfvl~~Et~~~ri~rywi~ 249 (376)
T KOG1520|consen 186 RDFVFAALEG--DPTGR--LFRYDPSTKVTKVLLDGL-----YFPN-------GLALSPDGSFVLVAETTTARIKRYWIK 249 (376)
T ss_pred hheEEeeecC--CCccc--eEEecCcccchhhhhhcc-----cccc-------cccCCCCCCEEEEEeeccceeeeeEec
Confidence 2334433333 12233 668888777766665432 1111 246899999988888777777778876
Q ss_pred ecCCCce
Q 007338 458 SWPLKKS 464 (607)
Q Consensus 458 ~~~~~~~ 464 (607)
...-|+.
T Consensus 250 g~k~gt~ 256 (376)
T KOG1520|consen 250 GPKAGTS 256 (376)
T ss_pred CCccCch
Confidence 5444433
No 247
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=79.50 E-value=5.1 Score=39.82 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=46.2
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCcc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDIC 84 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~ 84 (607)
.|+|+|+-. +...+.+. -...-+..+|+| ....|++. +...+||.+|...-+ +..+....
T Consensus 211 sIvLyD~R~---~~Pl~KVi---~~mRTN~IswnP--eafnF~~a--------~ED~nlY~~DmR~l~~p~~v~~dh--- 271 (433)
T KOG0268|consen 211 SIVLYDLRQ---ASPLKKVI---LTMRTNTICWNP--EAFNFVAA--------NEDHNLYTYDMRNLSRPLNVHKDH--- 271 (433)
T ss_pred ceEEEeccc---CCccceee---eeccccceecCc--cccceeec--------cccccceehhhhhhcccchhhccc---
Confidence 478888762 33333333 333678899999 55667664 234799999987532 33332111
Q ss_pred ccccccceEEecCCeEEEE
Q 007338 85 LNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 85 ~~~~~~~~~Wspd~~~l~~ 103 (607)
+++ +-++.+||-|+-++.
T Consensus 272 vsA-V~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 272 VSA-VMDVDFSPTGQEFVS 289 (433)
T ss_pred cee-EEEeccCCCcchhcc
Confidence 111 346778888776554
No 248
>PRK13614 lipoprotein LpqB; Provisional
Probab=79.43 E-value=27 Score=38.21 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=45.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEE---CCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIAD---AETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d---~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.++..++|+||-++|++... +++.+|++-- -..|+++.|+..-.........++.|..++.+++..
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~-------~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~ 503 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQ-------NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTK 503 (573)
T ss_pred eeEEEEECCCccEEEEEEEe-------CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEe
Confidence 59999999999999999854 4566677633 245777788643211111124578999999988774
No 249
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=78.96 E-value=25 Score=38.45 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=22.3
Q ss_pred cceEEEEeCCC--Ceeec-CCCCceeeeeeCCCCceEEEEE
Q 007338 156 TAQLVLGSLDG--TAKDF-GTPAVYTAVEPSPDQKYVLITS 193 (607)
Q Consensus 156 ~~~l~~~~~~g--~~~~l-t~~~~~~~~~~SpDg~~i~~~~ 193 (607)
.--+.+++... +...+ +....+..++||++|+|++.-.
T Consensus 57 GCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGE 97 (1080)
T KOG1408|consen 57 GCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGE 97 (1080)
T ss_pred CcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecc
Confidence 33455556532 22222 2233457899999999998654
No 250
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=78.67 E-value=17 Score=34.92 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=58.7
Q ss_pred CCceeeeEEEeccCCCC---CCC-eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceee
Q 007338 1 MPFFTGIGIHRLLPDDS---LGP-EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKP 76 (607)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~g~-~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~ 76 (607)
|++..-|-+.++.++.+ ..+ ...|. .++. .+..+.|+|-|+.|++--. ...|-++|+.+|+...
T Consensus 116 mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~s-kit~a~Wg~l~~~ii~Ghe----------~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDS-KITSALWGPLGETIIAGHE----------DGSISIYDARTGKELV 183 (327)
T ss_pred cCcceEEEEEEccCChhhhcccCceEEec-CCcc-ceeeeeecccCCEEEEecC----------CCcEEEEEcccCceee
Confidence 77778888888874432 223 33443 3443 6899999999999876532 3578888999986432
Q ss_pred cccCCCccccccccceEEecCCeEEEEE
Q 007338 77 LFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 77 lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
-. .. ..+..+..+++|+|..+++..
T Consensus 184 ~s--~~-~h~~~Ind~q~s~d~T~FiT~ 208 (327)
T KOG0643|consen 184 DS--DE-EHSSKINDLQFSRDRTYFITG 208 (327)
T ss_pred ec--hh-hhccccccccccCCcceEEec
Confidence 21 11 112236789999999987775
No 251
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=78.63 E-value=8.5 Score=36.83 Aligned_cols=92 Identities=16% Similarity=0.087 Sum_probs=63.7
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhc-cCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLA-RRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~-~GY~Vl 559 (607)
..+.+..+.+-|-.+.+..++|+.+ +.++|+|.|+.. ... +. .....-.|.. ..+-|+
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~~------~~~~lly~hGNa-----------~Dl-gq---~~~~~~~l~~~ln~nv~ 92 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPEA------AHPTLLYSHGNA-----------ADL-GQ---MVELFKELSIFLNCNVV 92 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCccc------cceEEEEcCCcc-----------cch-HH---HHHHHHHHhhcccceEE
Confidence 5677888888999999999999853 349999977420 000 10 0111223333 377888
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhc
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
. - -..|+|...|+.-.+.+.+|+.++++||..+.
T Consensus 93 ~-~--DYSGyG~S~G~psE~n~y~Di~avye~Lr~~~ 126 (258)
T KOG1552|consen 93 S-Y--DYSGYGRSSGKPSERNLYADIKAVYEWLRNRY 126 (258)
T ss_pred E-E--ecccccccCCCcccccchhhHHHHHHHHHhhc
Confidence 6 2 23678888787788899999999999999876
No 252
>PRK02888 nitrous-oxide reductase; Validated
Probab=78.43 E-value=97 Score=34.13 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=23.5
Q ss_pred CCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCC
Q 007338 185 DQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLP 228 (607)
Q Consensus 185 Dg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~ 228 (607)
||+||++.-.. ..++-+++++.-+..++.++|
T Consensus 140 dGr~~findk~------------n~Rvari~l~~~~~~~i~~iP 171 (635)
T PRK02888 140 DGRYLFINDKA------------NTRVARIRLDVMKCDKITELP 171 (635)
T ss_pred ceeEEEEecCC------------CcceEEEECccEeeceeEeCC
Confidence 89999887321 347888999888888877654
No 253
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=76.63 E-value=61 Score=33.40 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=32.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.++..+|-|||- +|..- .....|-+||++.+. .++.++. ..+.+..+.|+.+|-+++..
T Consensus 349 ~~ts~~fHpDgL--ifgtg--------t~d~~vkiwdlks~~--~~a~Fpg--ht~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 349 EYTSAAFHPDGL--IFGTG--------TPDGVVKIWDLKSQT--NVAKFPG--HTGPVKAISFSENGYWLATA 407 (506)
T ss_pred eeEEeeEcCCce--EEecc--------CCCceEEEEEcCCcc--ccccCCC--CCCceeEEEeccCceEEEEE
Confidence 367777788873 34322 123566666777654 2222221 12235677787777777664
No 254
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.59 E-value=1.7e+02 Score=34.63 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=36.4
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+....+--|+..|.++.. ..+|.+.|+++....-+.....+ +....||||++++...
T Consensus 71 i~s~~fl~d~~~i~v~~~----------~G~iilvd~et~~~eivg~vd~G-----I~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITA----------LGDIILVDPETLELEIVGNVDNG-----ISAASWSPDEELLALI 127 (1265)
T ss_pred eEEEEEecccceEEEEec----------CCcEEEEcccccceeeeeeccCc-----eEEEeecCCCcEEEEE
Confidence 344455556666655542 35677778887776655444443 6789999998876654
No 255
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.59 E-value=9.2 Score=30.30 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=29.1
Q ss_pred ccceEEEEeC-CCCeeecCCC-CceeeeeeCCCCceEEEEEcc
Q 007338 155 TTAQLVLGSL-DGTAKDFGTP-AVYTAVEPSPDQKYVLITSMH 195 (607)
Q Consensus 155 ~~~~l~~~~~-~g~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~ 195 (607)
..++|+.+|. +++.+.|..+ .+-..+++|||+++|+++...
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc
Confidence 4679999999 6666665543 234689999999999999753
No 256
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=75.23 E-value=29 Score=33.98 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=41.0
Q ss_pred CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 29 DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 29 ~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
+-..+...+|-|.|..|+.-.. -..+.++|+++-+--.-. .++....+.+..+..|+.+++++..
T Consensus 215 d~~~vrsiSfHPsGefllvgTd----------Hp~~rlYdv~T~Qcfvsa-nPd~qht~ai~~V~Ys~t~~lYvTa 279 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGTD----------HPTLRLYDVNTYQCFVSA-NPDDQHTGAITQVRYSSTGSLYVTA 279 (430)
T ss_pred ccceeeeEeecCCCceEEEecC----------CCceeEEeccceeEeeec-CcccccccceeEEEecCCccEEEEe
Confidence 3335788999999999877653 356778888775532111 1221122225577888888887775
No 257
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=74.21 E-value=12 Score=34.47 Aligned_cols=87 Identities=10% Similarity=0.144 Sum_probs=52.7
Q ss_pred ceEEEEEECCCCc-eEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGV-PLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~-~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
..|.+.|= ..|. .|+-| .|.+.+ |+.|++|+|... . |.-. .. -........+||+|.
T Consensus 44 r~e~l~Yg-~~g~q~VDIw--g~~~~~-------klfIfIHGGYW~-------~-g~rk--~c--lsiv~~a~~~gY~va 101 (270)
T KOG4627|consen 44 RVEHLRYG-EGGRQLVDIW--GSTNQA-------KLFIFIHGGYWQ-------E-GDRK--MC--LSIVGPAVRRGYRVA 101 (270)
T ss_pred chhccccC-CCCceEEEEe--cCCCCc-------cEEEEEecchhh-------c-Cchh--cc--cchhhhhhhcCeEEE
Confidence 66777773 3444 34433 454322 899998854211 0 1000 00 112346777999999
Q ss_pred eCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
. +||+.-+...-..+...++..+|+|+.+.
T Consensus 102 s------vgY~l~~q~htL~qt~~~~~~gv~filk~ 131 (270)
T KOG4627|consen 102 S------VGYNLCPQVHTLEQTMTQFTHGVNFILKY 131 (270)
T ss_pred E------eccCcCcccccHHHHHHHHHHHHHHHHHh
Confidence 7 77877655545577788899999999865
No 258
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=74.12 E-value=12 Score=36.10 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=40.0
Q ss_pred eEEEeccCCCCCCCe-eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeec
Q 007338 7 IGIHRLLPDDSLGPE-KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPL 77 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~-~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~l 77 (607)
|-|+.-+|++++=.. -++.. ...++-+..+||||+..|||... ...|.++|+-+.+...+
T Consensus 20 iEiRsa~Ddf~si~~kcqVpk-D~~PQWRkl~WSpD~tlLa~a~S----------~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 20 IEIRSAKDDFSSIIGKCQVPK-DPNPQWRKLAWSPDCTLLAYAES----------TGTIRVFDLMGSELFVI 80 (282)
T ss_pred EEEEeccCCchheeEEEecCC-CCCchheEEEECCCCcEEEEEcC----------CCeEEEEecccceeEEc
Confidence 456666666665422 23321 12335688999999999999864 46888889988766655
No 259
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=73.03 E-value=1.1e+02 Score=31.52 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=31.2
Q ss_pred ceEEEEeC-CC-CeeecCCC-CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCC
Q 007338 157 AQLVLGSL-DG-TAKDFGTP-AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTD 217 (607)
Q Consensus 157 ~~l~~~~~-~g-~~~~lt~~-~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~ 217 (607)
+.|-++|+ ++ ....+... +.+..++||.+|=|++..+++ ..+.+||+.
T Consensus 369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add-------------~~V~lwDLR 419 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADD-------------GSVKLWDLR 419 (506)
T ss_pred ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecC-------------CeEEEEEeh
Confidence 45556666 33 33333322 356789999999888887643 248889985
No 260
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=73.02 E-value=1.2e+02 Score=31.49 Aligned_cols=60 Identities=7% Similarity=0.068 Sum_probs=41.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
.+.+..-+|+|.+|+-.. -..+||+|.+++|+..-+... ....+..+.|+.|+.++|...
T Consensus 83 ~v~al~s~n~G~~l~ag~----------i~g~lYlWelssG~LL~v~~a----HYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGT----------ISGNLYLWELSSGILLNVLSA----HYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred ceeeeecCCCceEEEeec----------ccCcEEEEEeccccHHHHHHh----hccceeEEEEeCCCcEEEecC
Confidence 377888899997765442 247999999999986544211 122356778888888877754
No 261
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.95 E-value=75 Score=32.75 Aligned_cols=36 Identities=8% Similarity=-0.112 Sum_probs=23.4
Q ss_pred cceEEEEeCCC-CeeecCCCC-ceeeeeeCCCCceEEEE
Q 007338 156 TAQLVLGSLDG-TAKDFGTPA-VYTAVEPSPDQKYVLIT 192 (607)
Q Consensus 156 ~~~l~~~~~~g-~~~~lt~~~-~~~~~~~SpDg~~i~~~ 192 (607)
...+++++.+| +.+.+...- ....++|+|+|+. +++
T Consensus 163 ~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l-~~t 200 (367)
T TIGR02604 163 GGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDV-FFC 200 (367)
T ss_pred CceEEEEecCCCeEEEEecCcCCCccceECCCCCE-EEE
Confidence 35788999855 555555432 2347899999865 444
No 262
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=72.79 E-value=51 Score=36.21 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=22.4
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
....+.++||+++++.+.. ..-+.+|.+.+++
T Consensus 64 ~ita~~l~~d~~~L~~a~r-------------s~llrv~~L~tgk 95 (775)
T KOG0319|consen 64 EITALALTPDEEVLVTASR-------------SQLLRVWSLPTGK 95 (775)
T ss_pred hhheeeecCCccEEEEeec-------------cceEEEEEcccch
Confidence 4568899999888777653 1246678887763
No 263
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.87 E-value=79 Score=30.94 Aligned_cols=73 Identities=18% Similarity=0.189 Sum_probs=44.0
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCE-EEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEe
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKR-IAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWV 95 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~-laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Ws 95 (607)
.|+..--+.+|. +-....++|--.+ ++|.+ + ...-.+++|..+++. +.++..++.- .++.=.||
T Consensus 57 aGk~v~~~~lpa--R~Hgi~~~p~~~ravafAR-r--------PGtf~~vfD~~~~~~pv~~~s~~~RH---fyGHGvfs 122 (366)
T COG3490 57 AGKIVFATALPA--RGHGIAFHPALPRAVAFAR-R--------PGTFAMVFDPNGAQEPVTLVSQEGRH---FYGHGVFS 122 (366)
T ss_pred CCceeeeeeccc--ccCCeecCCCCcceEEEEe-c--------CCceEEEECCCCCcCcEEEecccCce---eecccccC
Confidence 344444444555 4677888885544 45544 3 357788999998764 3333222211 23455789
Q ss_pred cCCeEEEEE
Q 007338 96 NNSTLLIFT 104 (607)
Q Consensus 96 pd~~~l~~~ 104 (607)
+||++|+-+
T Consensus 123 ~dG~~LYAT 131 (366)
T COG3490 123 PDGRLLYAT 131 (366)
T ss_pred CCCcEEEee
Confidence 999998875
No 264
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=70.09 E-value=42 Score=33.07 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=56.2
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
.|.|.+|.-+. -+.+..|-... ..++..+++-+|..||-.++ .++-|-++|..+|+..+=. ..+-.
T Consensus 160 qvQi~dL~~~~-~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaSt---------kGTLIRIFdt~~g~~l~E~--RRG~d 225 (346)
T KOG2111|consen 160 QVQIVDLASTK-PNAPSIINAHD--SDIACVALNLQGTLVATAST---------KGTLIRIFDTEDGTLLQEL--RRGVD 225 (346)
T ss_pred eEEEEEhhhcC-cCCceEEEccc--CceeEEEEcCCccEEEEecc---------CcEEEEEEEcCCCcEeeee--ecCCc
Confidence 46777776211 11234454322 25899999999999998875 3578999999998754322 11111
Q ss_pred cccccceEEecCCeEEEEEec
Q 007338 86 NAVFGSFVWVNNSTLLIFTIP 106 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~~~~ 106 (607)
.+.+-.+.||||..++..+++
T Consensus 226 ~A~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 226 RADIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred hheEEEEEeCCCccEEEEEcC
Confidence 223457899999888887643
No 265
>PRK00870 haloalkane dehalogenase; Provisional
Probab=68.24 E-value=17 Score=36.26 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=34.5
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCc-hhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPT-SSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~-~~q~la~~GY~Vl 559 (607)
....++....||.++.=. |...+ ++ .. |.||++|+- +. +. ..|. ....|+++||.|+
T Consensus 20 ~~~~~~~~~~~~~~~~i~-y~~~G-~~--~~--~~lvliHG~--------------~~-~~-~~w~~~~~~L~~~gy~vi 77 (302)
T PRK00870 20 APHYVDVDDGDGGPLRMH-YVDEG-PA--DG--PPVLLLHGE--------------PS-WS-YLYRKMIPILAAAGHRVI 77 (302)
T ss_pred CceeEeecCCCCceEEEE-EEecC-CC--CC--CEEEEECCC--------------CC-ch-hhHHHHHHHHHhCCCEEE
Confidence 566677766677654411 22322 22 12 677777642 11 11 0111 1346777899999
Q ss_pred eCCCCceec
Q 007338 560 AGPSIPIIG 568 (607)
Q Consensus 560 ~~~~~~~~g 568 (607)
. ++.|.+|
T Consensus 78 ~-~Dl~G~G 85 (302)
T PRK00870 78 A-PDLIGFG 85 (302)
T ss_pred E-ECCCCCC
Confidence 8 7765444
No 266
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=67.90 E-value=3.5 Score=42.68 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=18.8
Q ss_pred CCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 513 lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
+|||||-||- +|.. ..+.....-||++||+|+.
T Consensus 100 ~PvvIFSHGl------------gg~R---~~yS~~~~eLAS~GyVV~a 132 (379)
T PF03403_consen 100 FPVVIFSHGL------------GGSR---TSYSAICGELASHGYVVAA 132 (379)
T ss_dssp EEEEEEE--T------------T--T---TTTHHHHHHHHHTT-EEEE
T ss_pred CCEEEEeCCC------------Ccch---hhHHHHHHHHHhCCeEEEE
Confidence 3999998742 2211 1112235789999999997
No 267
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=67.86 E-value=1.3e+02 Score=29.55 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=33.9
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCE-----EEEEeecCcccccCCCceeEEEEECCCCce
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKR-----IAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~-----laf~~~~~~~~~~~~~~~~L~v~d~~~g~~ 74 (607)
|.|..|. .++++.+.-..|.-....+...|.||.+- ||-+ .....||..+.+.++.
T Consensus 75 vqiv~ld--~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs----------~D~LRlWri~~ee~~~ 135 (364)
T KOG0290|consen 75 VQIVQLD--EDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS----------SDFLRLWRIGDEESRV 135 (364)
T ss_pred eEEEEEc--cCCCceeccCCCCCCCCccceEecCCccccCcchhhcc----------cCeEEEEeccCcCCce
Confidence 4455554 34666666655554445788999999852 2222 3457788877655544
No 268
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=67.26 E-value=47 Score=32.88 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=22.6
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
+.++-+.|.+||++++.-+... .+|-.||+.-
T Consensus 251 gGvThL~~~edGn~lfsGaRk~------------dkIl~WDiR~ 282 (406)
T KOG2919|consen 251 GGVTHLQWCEDGNKLFSGARKD------------DKILCWDIRY 282 (406)
T ss_pred CCeeeEEeccCcCeecccccCC------------CeEEEEeehh
Confidence 4567899999999887664321 2677888753
No 269
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=66.77 E-value=35 Score=33.41 Aligned_cols=57 Identities=12% Similarity=0.083 Sum_probs=36.9
Q ss_pred ceEEEEeCCCCeee--c-CCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEecc
Q 007338 157 AQLVLGSLDGTAKD--F-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCD 226 (607)
Q Consensus 157 ~~l~~~~~~g~~~~--l-t~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 226 (607)
.++|-+..+|.... . ...+-+....||.||..++....+ ..+.+||+.++++.++..
T Consensus 52 VR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~D-------------k~~k~wDL~S~Q~~~v~~ 111 (347)
T KOG0647|consen 52 VRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCD-------------KQAKLWDLASGQVSQVAA 111 (347)
T ss_pred eEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccC-------------CceEEEEccCCCeeeeee
Confidence 45555554443221 1 122345679999999888777543 367889999998888753
No 270
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.49 E-value=1.3e+02 Score=29.00 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=45.5
Q ss_pred eeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccc
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICL 85 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~ 85 (607)
-|+|+++.+ +.| .+.+..+.-.-...+.+||+.-..+++.... ++ .|-++|+. ....+|...++ .
T Consensus 39 ~L~ile~~~--~~g-i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G-------DG--SLrl~d~~-~~s~Pi~~~kE--H 103 (311)
T KOG0277|consen 39 RLFILEVTD--PKG-IQECQSYDTEDGLFDVAWSENHENQVIAASG-------DG--SLRLFDLT-MPSKPIHKFKE--H 103 (311)
T ss_pred eEEEEecCC--CCC-eEEEEeeecccceeEeeecCCCcceEEEEec-------Cc--eEEEeccC-CCCcchhHHHh--h
Confidence 378888752 222 2222223333358899999999999988753 44 55555642 32333322222 1
Q ss_pred cccccceEEecCCeEEEE
Q 007338 86 NAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 86 ~~~~~~~~Wspd~~~l~~ 103 (607)
..++-++.|.+-.+..|.
T Consensus 104 ~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 104 KREVYSVDWNTVRRRIFL 121 (311)
T ss_pred hhheEEeccccccceeEE
Confidence 223567888876443333
No 271
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=65.75 E-value=36 Score=35.41 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=58.8
Q ss_pred CceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
.+.|...+++.||. |-.+=-.|..- + +.|+|+..|+-.-++. ..+..+|+ ..-.=+||.+||=|-
T Consensus 46 y~~E~h~V~T~DgY-iL~lhRIp~~~--~---~rp~Vll~HGLl~sS~---~Wv~n~p~------~sLaf~LadaGYDVW 110 (403)
T KOG2624|consen 46 YPVEEHEVTTEDGY-ILTLHRIPRGK--K---KRPVVLLQHGLLASSS---SWVLNGPE------QSLAFLLADAGYDVW 110 (403)
T ss_pred CceEEEEEEccCCe-EEEEeeecCCC--C---CCCcEEEeeccccccc---cceecCcc------ccHHHHHHHcCCcee
Confidence 37999999999997 44444445442 2 2388888885421110 01111121 111238999999999
Q ss_pred eCCCCceeccCCC-----C--chhhH----HH-HhhcHHHHHHHHHHhcc
Q 007338 560 AGPSIPIIGEGLW-----S--NWFQV----QR-LLLKKLFDVEWLIQAEL 597 (607)
Q Consensus 560 ~~~~~~~~g~g~~-----~--~~~~~----~~-~~~~~~~~v~~~~~~~~ 597 (607)
.+|.+++. +... + ..++| .+ -..|+-+.|+++.+..-
T Consensus 111 LgN~RGn~-ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~ 159 (403)
T KOG2624|consen 111 LGNNRGNT-YSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKTG 159 (403)
T ss_pred eecCcCcc-cchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhcc
Confidence 96665422 2111 1 22122 23 47799999999988764
No 272
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=65.20 E-value=5.4 Score=39.14 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=21.1
Q ss_pred CCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 513 LPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 513 lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
+|+||+-|+- |+...+++.+ =--||++||+|..
T Consensus 118 ~PvvvFSHGL------------ggsRt~YSa~---c~~LAShG~VVaa 150 (399)
T KOG3847|consen 118 YPVVVFSHGL------------GGSRTLYSAY---CTSLASHGFVVAA 150 (399)
T ss_pred ccEEEEeccc------------ccchhhHHHH---hhhHhhCceEEEE
Confidence 4999997742 3322222221 2479999999997
No 273
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=65.16 E-value=43 Score=35.94 Aligned_cols=103 Identities=15% Similarity=0.195 Sum_probs=60.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.++...|-.+|.+||.+... .+...+++.++.-...+--+.-..+ .+....|.|-...+|+++
T Consensus 523 ~i~~vtWHrkGDYlatV~~~-------~~~~~VliHQLSK~~sQ~PF~kskG----~vq~v~FHPs~p~lfVaT------ 585 (733)
T KOG0650|consen 523 SIRQVTWHRKGDYLATVMPD-------SGNKSVLIHQLSKRKSQSPFRKSKG----LVQRVKFHPSKPYLFVAT------ 585 (733)
T ss_pred ccceeeeecCCceEEEeccC-------CCcceEEEEecccccccCchhhcCC----ceeEEEecCCCceEEEEe------
Confidence 58888899999998887643 4567788888764443311111111 133455666655555431
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCC-eeecCCC-CceeeeeeCCCCce
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGT-AKDFGTP-AVYTAVEPSPDQKY 188 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~-~~~lt~~-~~~~~~~~SpDg~~ 188 (607)
...+-++|+ .++ ++.|..+ ..++.++++|.|..
T Consensus 586 --------------------------------------------q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 586 --------------------------------------------QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDN 621 (733)
T ss_pred --------------------------------------------ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCe
Confidence 123344555 332 3344333 45678999999999
Q ss_pred EEEEEcc
Q 007338 189 VLITSMH 195 (607)
Q Consensus 189 i~~~~~~ 195 (607)
|+..+..
T Consensus 622 li~gs~d 628 (733)
T KOG0650|consen 622 LILGSYD 628 (733)
T ss_pred EEEecCC
Confidence 9888653
No 274
>PRK13615 lipoprotein LpqB; Provisional
Probab=64.64 E-value=94 Score=33.97 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=43.2
Q ss_pred CcccceEEccCCCEEEEEeecCcccccCCCceeEEEE--ECCCCceeec-ccCCCccc-cccccceEEecCCeEEEEE
Q 007338 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIA--DAETGEAKPL-FESPDICL-NAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~--d~~~g~~~~l-t~~~~~~~-~~~~~~~~Wspd~~~l~~~ 104 (607)
..++..+.|+||-++|++... .++.+|++- -..++.++.| +..-.... .....++.|..++++++..
T Consensus 417 ~~I~~lrvSrDG~R~Avi~~~-------~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 417 GRVVSLEVARDGARVLVQLET-------GAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred CeeEEEEeCCCccEEEEEEec-------CCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 369999999999999999764 344566663 2345556666 43211100 0124578999999987764
No 275
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=64.32 E-value=1.8e+02 Score=30.11 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=39.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
......++|||+.++..-.. .+...++++|.++++..+....... ......+|++..++.+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~-------~~~~~vsvid~~t~~~~~~~~vG~~-----P~~~a~~p~g~~vyv~ 177 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAG-------NGNNTVSVIDAATNKVTATIPVGNT-----PTGVAVDPDGNKVYVT 177 (381)
T ss_pred CCceEEECCCCCEEEEEecc-------cCCceEEEEeCCCCeEEEEEecCCC-----cceEEECCCCCeEEEE
Confidence 57788999999987554321 1468899999998876544221111 2456777887755553
No 276
>PRK13613 lipoprotein LpqB; Provisional
Probab=64.31 E-value=1.3e+02 Score=33.35 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=46.8
Q ss_pred CCCeeeeecCC-CCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEEC---CCCceeecccCCCccc-cccccce
Q 007338 18 LGPEKEVHGYP-DGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADA---ETGEAKPLFESPDICL-NAVFGSF 92 (607)
Q Consensus 18 ~g~~~~lt~~~-~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~---~~g~~~~lt~~~~~~~-~~~~~~~ 92 (607)
+|+...+.... .+..++..+.|+||-++|++... .++.+|++--+ +.|+ +.|+..-.... ...+.++
T Consensus 441 ~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~-------~g~~~v~va~V~R~~~G~-~~l~~~~~l~~~l~~v~~~ 512 (599)
T PRK13613 441 DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEK-------DGRRSLQIGRIVRDAKAV-VSVEEFRSLAPELEDVTDM 512 (599)
T ss_pred CCcEEEeeccccCCCEeEEEEECCCccEEEEEEec-------CCCcEEEEEEEEeCCCCc-EEeeccEEeccCCCcccee
Confidence 44554454311 12269999999999999999864 34556665433 2354 45543211100 0114588
Q ss_pred EEecCCeEEEEE
Q 007338 93 VWVNNSTLLIFT 104 (607)
Q Consensus 93 ~Wspd~~~l~~~ 104 (607)
.|..++.+++..
T Consensus 513 ~W~~~~sL~Vlg 524 (599)
T PRK13613 513 SWAGDSQLVVLG 524 (599)
T ss_pred EEcCCCEEEEEe
Confidence 999999987753
No 277
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=63.65 E-value=1.1e+02 Score=30.02 Aligned_cols=67 Identities=19% Similarity=0.236 Sum_probs=43.0
Q ss_pred eeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 21 EKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 21 ~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
..+|.+.|.. .+++.+|||.++.|+.++- ++ .|-+++....+.++....... +-.+.|.++.++
T Consensus 5 ~~~l~npP~d-~IS~v~f~~~~~~LLvssW--------Dg--slrlYdv~~~~l~~~~~~~~p-----lL~c~F~d~~~~ 68 (323)
T KOG1036|consen 5 EFELENPPED-GISSVKFSPSSSDLLVSSW--------DG--SLRLYDVPANSLKLKFKHGAP-----LLDCAFADESTI 68 (323)
T ss_pred ccccCCCChh-ceeeEEEcCcCCcEEEEec--------cC--cEEEEeccchhhhhheecCCc-----eeeeeccCCceE
Confidence 4455544444 7999999999999988774 33 566667776666555443331 446677766665
Q ss_pred EEE
Q 007338 101 LIF 103 (607)
Q Consensus 101 l~~ 103 (607)
+..
T Consensus 69 ~~G 71 (323)
T KOG1036|consen 69 VTG 71 (323)
T ss_pred EEe
Confidence 543
No 278
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=63.06 E-value=5.6 Score=38.38 Aligned_cols=28 Identities=43% Similarity=0.678 Sum_probs=23.7
Q ss_pred CceEEEEEEcCCCCCCCCCCCCCEEEEecc
Q 007338 492 GVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (607)
Q Consensus 492 G~~i~g~l~~P~~~~~~k~y~lP~iv~~y~ 521 (607)
|.++.-++|+|++|++.++| |||++.|+
T Consensus 5 g~~~~~~VylP~~y~~~~~~--PvlylldG 32 (251)
T PF00756_consen 5 GRDRRVWVYLPPGYDPSKPY--PVLYLLDG 32 (251)
T ss_dssp TEEEEEEEEECTTGGTTTTE--EEEEEESH
T ss_pred CCeEEEEEEECCCCCCCCCC--EEEEEccC
Confidence 67899999999999777766 99998764
No 279
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=63.06 E-value=1.9e+02 Score=31.23 Aligned_cols=92 Identities=9% Similarity=-0.028 Sum_probs=45.2
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecC-cccccCCCceeEEEEECCCCceeecccCCCc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVD-EEDNVSSCKLRVWIADAETGEAKPLFESPDI 83 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~-~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~ 83 (607)
+||.|..+. +++...|...-.....-...||-...+.+++.... ...+ +..-+-.++....++.+++.-. ..
T Consensus 184 aNl~L~~~~----~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g--~~~~d~ciYE~~r~klqrvsvt-si 256 (545)
T PF11768_consen 184 ANLHLLSCS----GGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKG--EPSADSCIYECSRNKLQRVSVT-SI 256 (545)
T ss_pred ccEEEEEec----CCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCC--CceeEEEEEEeecCceeEEEEE-EE
Confidence 477777776 55555554332232455667776555555554331 1111 2234455566666665554211 11
Q ss_pred cccccccceEEecCCeEEEE
Q 007338 84 CLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 84 ~~~~~~~~~~Wspd~~~l~~ 103 (607)
++...+..++++|+.+.++.
T Consensus 257 pL~s~v~~ca~sp~E~kLvl 276 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVL 276 (545)
T ss_pred ecCCcceEEecCcccceEEE
Confidence 12223456777877444333
No 280
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=62.59 E-value=1.2e+02 Score=30.87 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=38.7
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc--eeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE--AKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~--~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
.+...+|||.-+-++++... + ..|-++|+..+. +-..|...+.. +.-+.|+-+-.+|++
T Consensus 259 SVEDLqWSptE~~vfaScS~-------D--gsIrIWDiRs~~~~~~~~~kAh~sD----VNVISWnr~~~lLas 319 (440)
T KOG0302|consen 259 SVEDLQWSPTEDGVFASCSC-------D--GSIRIWDIRSGPKKAAVSTKAHNSD----VNVISWNRREPLLAS 319 (440)
T ss_pred chhhhccCCccCceEEeeec-------C--ceEEEEEecCCCccceeEeeccCCc----eeeEEccCCcceeee
Confidence 68999999999999888865 2 466777887763 33343322222 556788765345554
No 281
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=62.42 E-value=2.3e+02 Score=30.60 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=26.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE 73 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~ 73 (607)
..+....||||++|.-+. .++.+|-++|++.-.
T Consensus 53 ast~ik~s~DGqY~lAtG---------~YKP~ikvydlanLS 85 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATG---------TYKPQIKVYDLANLS 85 (703)
T ss_pred ccceeEecCCCcEEEEec---------ccCCceEEEEcccce
Confidence 356789999999987664 467899999998654
No 282
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=62.18 E-value=20 Score=34.22 Aligned_cols=50 Identities=14% Similarity=0.014 Sum_probs=33.0
Q ss_pred hhHHHhccCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHhcccccc
Q 007338 547 SSLIFLARRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQAELLLED 601 (607)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 601 (607)
..+.||++||+|+. +|.. -| --+......+......+++.|.+++-++..
T Consensus 39 lLe~La~~Gy~ViA---tPy~-~t-fDH~~~A~~~~~~f~~~~~~L~~~~~~~~~ 88 (250)
T PF07082_consen 39 LLERLADRGYAVIA---TPYV-VT-FDHQAIAREVWERFERCLRALQKRGGLDPA 88 (250)
T ss_pred HHHHHHhCCcEEEE---EecC-CC-CcHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 46889999999998 2321 11 135555566666667788888887765544
No 283
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.06 E-value=90 Score=31.44 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=35.4
Q ss_pred eEEEEeC-CCC-eeec-CCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEE
Q 007338 158 QLVLGSL-DGT-AKDF-GTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRE 223 (607)
Q Consensus 158 ~l~~~~~-~g~-~~~l-t~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 223 (607)
-|-++|+ +|. +-.| .....+.+++|||-|+||+-.+.+ ..|.+||++++....
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD-------------ktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD-------------KTLRVWDLKNLQCMK 370 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecC-------------CcEEEEEeccceeee
Confidence 3444555 452 3333 334567899999999999987642 378899998775443
No 284
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=61.94 E-value=1.6e+02 Score=30.51 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=40.1
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCC---cccceEEccCCCEEEEEeecCcccccC---CCceeEEEEECCCCceeecc
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGA---KINFVSWSPDGKRIAFSVRVDEEDNVS---SCKLRVWIADAETGEAKPLF 78 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~---~~~~~~~SPDG~~laf~~~~~~~~~~~---~~~~~L~v~d~~~g~~~~lt 78 (607)
-|||.++++ +.+.+++.. |..+ .-...+.-|.|...+|-.... .+.+ ---.++|++|+.+.+..||-
T Consensus 98 ndLy~Yn~k----~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfa--SPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 98 NDLYSYNTK----KNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFA--SPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeeEEecc----ccceeEecc-CCCcCCCccceeEEeccCeEEEeccccC--Ccchhhhhhhhheeeeeeccchheeec
Confidence 478999987 788888863 4333 233445556674433332211 1100 11257999999999888884
No 285
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=61.78 E-value=28 Score=34.68 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=26.8
Q ss_pred CEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceeccCCC
Q 007338 514 PCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIGEGLW 572 (607)
Q Consensus 514 P~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g~g~~ 572 (607)
|+|++.| |-|..|..+. +-.-.|+++||.|++ +++ +|||..
T Consensus 45 P~illlH--------------GfPe~wyswr-~q~~~la~~~~rviA-~Dl--rGyG~S 85 (322)
T KOG4178|consen 45 PIVLLLH--------------GFPESWYSWR-HQIPGLASRGYRVIA-PDL--RGYGFS 85 (322)
T ss_pred CEEEEEc--------------cCCccchhhh-hhhhhhhhcceEEEe-cCC--CCCCCC
Confidence 8888765 4454332221 113489999999999 776 667665
No 286
>COG1647 Esterase/lipase [General function prediction only]
Probab=61.54 E-value=4.6 Score=37.65 Aligned_cols=44 Identities=16% Similarity=-0.056 Sum_probs=31.7
Q ss_pred HHHhccCeEEEeCCCCceecc-CC----CCchhhHHHHhhcHHHHHHHHHHhcc
Q 007338 549 LIFLARRFAVLAGPSIPIIGE-GL----WSNWFQVQRLLLKKLFDVEWLIQAEL 597 (607)
Q Consensus 549 q~la~~GY~Vl~~~~~~~~g~-g~----~~~~~~~~~~~~~~~~~v~~~~~~~~ 597 (607)
.+|..+||.|.. |..|-+|- .. +.-+.| ..++.++-++|..+|+
T Consensus 36 r~L~e~GyTv~a-P~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy 84 (243)
T COG1647 36 RYLNENGYTVYA-PRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY 84 (243)
T ss_pred HHHHHCCceEec-CCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC
Confidence 588899999999 66655542 11 145556 6678888899998887
No 287
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=60.96 E-value=1.5e+02 Score=27.88 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=24.1
Q ss_pred ccceE--EccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeeccc
Q 007338 33 INFVS--WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFE 79 (607)
Q Consensus 33 ~~~~~--~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~ 79 (607)
...+. ..+++++++... ....|+.+|+++|+...-..
T Consensus 25 ~~~~~~~~~~~~~~v~~~~----------~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 25 IGGPVATAVPDGGRVYVAS----------GDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp CSSEEETEEEETTEEEEEE----------TTSEEEEEETTTSEEEEEEE
T ss_pred CCCccceEEEeCCEEEEEc----------CCCEEEEEECCCCCEEEEee
Confidence 34444 445777765552 24799999999998754433
No 288
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=60.54 E-value=2.4e+02 Score=30.27 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=24.3
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
.+.++.+||||+.++..+ ..|-++|++++++-
T Consensus 146 ~~~sl~is~D~~~l~~as---------------~~ik~~~~~~kevv 177 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTAS---------------RQIKVLDIETKEVV 177 (541)
T ss_pred ccceEEEcCCCCEEEecc---------------ceEEEEEccCceEE
Confidence 467899999998887664 26888999887543
No 289
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=59.24 E-value=37 Score=21.83 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=19.3
Q ss_pred cCCCEEEEEeecCcccccCCCceeEEEEECCCCcee
Q 007338 40 PDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (607)
Q Consensus 40 PDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (607)
|||++|+ ++++ +...|.++|+.+++..
T Consensus 1 pd~~~ly-v~~~--------~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLY-VTNS--------GSNTVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEE-EEeC--------CCCEEEEEECCCCeEE
Confidence 7888864 5543 3578899999887654
No 290
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=58.91 E-value=1.2e+02 Score=29.62 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=36.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCc-cccccccceEEec--CCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDI-CLNAVFGSFVWVN--NSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~-~~~~~~~~~~Wsp--d~~~l~~~ 104 (607)
.+....|-|++..||-... ++|.+++++.+..+ +....+.. .....+.+-.||| |+..+..+
T Consensus 125 ~i~cvew~Pns~klasm~d-----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt 190 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDD-----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT 190 (370)
T ss_pred ceeeEEEcCCCCeeEEecc-----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe
Confidence 5688999999999988752 57788888876542 11111110 0011234567997 45565553
No 291
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=58.88 E-value=63 Score=29.42 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=42.9
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCC--CCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccC
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPD--GAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~--~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
+-+|||.++. +++..+|.--+. ....-...|--|- .|+.+..... |.-..+.+||++++.+|+...|+..
T Consensus 87 iGkIYIkn~~----~~~~~~L~i~~~~~k~sPK~i~WiDD~-~L~vIIG~a~--GTvS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 87 IGKIYIKNLN----NNNWWSLQIDQNEEKYSPKYIEWIDDN-NLAVIIGYAH--GTVSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred ceeEEEEecC----CCceEEEEecCcccccCCceeEEecCC-cEEEEEcccc--ceEccCCeEEEEEccCCceeEeeec
Confidence 3579999997 777766631111 2123456677555 4555433210 1113468999999999999999754
No 292
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=58.83 E-value=2.3e+02 Score=29.39 Aligned_cols=32 Identities=22% Similarity=0.398 Sum_probs=22.8
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
+.+..++|.|=+.+|+.+... ...|.+||+..
T Consensus 273 ~~vn~~~fnp~~~~ilAT~S~------------D~tV~LwDlRn 304 (422)
T KOG0264|consen 273 AEVNCVAFNPFNEFILATGSA------------DKTVALWDLRN 304 (422)
T ss_pred CceeEEEeCCCCCceEEeccC------------CCcEEEeechh
Confidence 345688999988888877542 23788898754
No 293
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=57.92 E-value=1.8e+02 Score=27.98 Aligned_cols=53 Identities=9% Similarity=-0.076 Sum_probs=35.2
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET 71 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~ 71 (607)
=.+.|+. +++.+.+. .......+.-.+-|||+.|..--.. ++...+.+++..+
T Consensus 48 s~~yD~~----tn~~rpl~-v~td~FCSgg~~L~dG~ll~tGG~~-------~G~~~ir~~~p~~ 100 (243)
T PF07250_consen 48 SVEYDPN----TNTFRPLT-VQTDTFCSGGAFLPDGRLLQTGGDN-------DGNKAIRIFTPCT 100 (243)
T ss_pred EEEEecC----CCcEEecc-CCCCCcccCcCCCCCCCEEEeCCCC-------ccccceEEEecCC
Confidence 3456665 78888887 3445578888999999887543322 3455566677654
No 294
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=57.79 E-value=1.4e+02 Score=27.33 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=41.1
Q ss_pred EccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 38 WSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 38 ~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
=|-+|++=|.+-..+++ +..++-..||++|+.+++..+|--..... .-..-.+.|.+|..+++..
T Consensus 65 ~s~~~~~saciegkg~~-a~eEgiGkIYIkn~~~~~~~~L~i~~~~~-k~sPK~i~WiDD~~L~vII 129 (200)
T PF15525_consen 65 NSENGKYSACIEGKGPE-AEEEGIGKIYIKNLNNNNWWSLQIDQNEE-KYSPKYIEWIDDNNLAVII 129 (200)
T ss_pred cccCCceeEEEEcCCCc-cccccceeEEEEecCCCceEEEEecCccc-ccCCceeEEecCCcEEEEE
Confidence 36778888887654322 22467789999999999876663221100 0012367899888877664
No 295
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=57.43 E-value=19 Score=38.91 Aligned_cols=53 Identities=13% Similarity=0.298 Sum_probs=35.9
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC-eeEEeccCCCCCCCCcccccccCCCCcceeecCCC
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK-LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKP 254 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~ 254 (607)
.+..+++.|||..++.++. .+++++|.+.| ...+|.. -...+..++||.||+
T Consensus 14 ci~d~afkPDGsqL~lAAg--------------~rlliyD~ndG~llqtLKg-------------HKDtVycVAys~dGk 66 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--------------SRLLVYDTSDGTLLQPLKG-------------HKDTVYCVAYAKDGK 66 (1081)
T ss_pred chheeEECCCCceEEEecC--------------CEEEEEeCCCccccccccc-------------ccceEEEEEEccCCc
Confidence 3568999999999998863 37999999744 4444421 112233488999988
Q ss_pred c
Q 007338 255 S 255 (607)
Q Consensus 255 ~ 255 (607)
.
T Consensus 67 r 67 (1081)
T KOG1538|consen 67 R 67 (1081)
T ss_pred e
Confidence 3
No 296
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.27 E-value=2e+02 Score=28.38 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=28.7
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEec
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (607)
.++++.|+||.+.++.+.+. +..|..++.+|.-++.+.
T Consensus 87 nvS~LTynp~~rtLFav~n~------------p~~iVElt~~GdlirtiP 124 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNK------------PAAIVELTKEGDLIRTIP 124 (316)
T ss_pred cccceeeCCCcceEEEecCC------------CceEEEEecCCceEEEec
Confidence 36789999999888887654 336778888888777653
No 297
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=54.65 E-value=62 Score=33.03 Aligned_cols=58 Identities=10% Similarity=-0.171 Sum_probs=33.2
Q ss_pred hhHHHhccCeEEEeCCCCceeccCCC-CchhhHHHHhhcHHHHHHHHHHhcccccccccccC
Q 007338 547 SSLIFLARRFAVLAGPSIPIIGEGLW-SNWFQVQRLLLKKLFDVEWLIQAELLLEDTLMEHS 607 (607)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~~~~g~g~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 607 (607)
...+|+++||.|+. .+.+ |.|.. ....+..-..+++.++|++|.++.-.+.=.|+-||
T Consensus 86 ~~~~L~~~G~~V~~-~D~~--g~g~s~~~~~~~d~~~~~~~~~v~~l~~~~~~~~i~lvGhS 144 (350)
T TIGR01836 86 LVRGLLERGQDVYL-IDWG--YPDRADRYLTLDDYINGYIDKCVDYICRTSKLDQISLLGIC 144 (350)
T ss_pred HHHHHHHCCCeEEE-EeCC--CCCHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCcccEEEEC
Confidence 46799999999998 4432 22221 11122233345577888888877544444444443
No 298
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=54.21 E-value=30 Score=33.40 Aligned_cols=19 Identities=11% Similarity=-0.071 Sum_probs=12.4
Q ss_pred HHHhccCeEEEeCCCCceec
Q 007338 549 LIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 549 q~la~~GY~Vl~~~~~~~~g 568 (607)
.++.++||.|+. ++.|..|
T Consensus 47 ~~l~~~g~~vi~-~d~~G~G 65 (288)
T TIGR01250 47 ELLKEEGREVIM-YDQLGCG 65 (288)
T ss_pred HHHHhcCCEEEE-EcCCCCC
Confidence 355556999998 6654433
No 299
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=54.01 E-value=34 Score=37.25 Aligned_cols=62 Identities=11% Similarity=0.231 Sum_probs=35.0
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC-CCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE-TGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~-~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.++...|||||++|+-.+. +....||-.--. ..+ ......+ .....+=++.|+||++.++..
T Consensus 574 TVT~l~FSpdg~~LLsvsR--------DRt~sl~~~~~~~~~e-~~fa~~k--~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSR--------DRTVSLYEVQEDIKDE-FRFACLK--AHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred EEEEEEECCCCcEEEEeec--------CceEEeeeeecccchh-hhhcccc--ccceEEEEcccCcccceeEEe
Confidence 4889999999999988764 455666654111 111 1110000 001112367899998875554
No 300
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=53.70 E-value=27 Score=35.36 Aligned_cols=60 Identities=25% Similarity=0.389 Sum_probs=40.2
Q ss_pred CCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhcc---C------eEEEeC
Q 007338 491 DGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLAR---R------FAVLAG 561 (607)
Q Consensus 491 DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~---G------Y~Vl~~ 561 (607)
.|.+||=.=.||+.-++ +|...|+++. ||.|.+++.+ +-+..+|..- | |-|+.
T Consensus 132 eGL~iHFlhvk~p~~k~-~k~v~PlLl~---------------HGwPGsv~EF-ykfIPlLT~p~~hg~~~d~~FEVI~- 193 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKK-KKKVKPLLLL---------------HGWPGSVREF-YKFIPLLTDPKRHGNESDYAFEVIA- 193 (469)
T ss_pred cceeEEEEEecCCcccc-CCcccceEEe---------------cCCCchHHHH-HhhhhhhcCccccCCccceeEEEec-
Confidence 78999999999987544 3446798883 4666554333 2334566655 4 77888
Q ss_pred CCCceec
Q 007338 562 PSIPIIG 568 (607)
Q Consensus 562 ~~~~~~g 568 (607)
|++|-+|
T Consensus 194 PSlPGyg 200 (469)
T KOG2565|consen 194 PSLPGYG 200 (469)
T ss_pred cCCCCcc
Confidence 8887665
No 301
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=53.16 E-value=11 Score=30.83 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=14.0
Q ss_pred ceEEccCCCEEEEEee
Q 007338 35 FVSWSPDGKRIAFSVR 50 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~ 50 (607)
-=.|||||++|.|+.+
T Consensus 72 vHvfSpDG~~lSFTYN 87 (122)
T PF12566_consen 72 VHVFSPDGSWLSFTYN 87 (122)
T ss_pred ceEECCCCCEEEEEec
Confidence 3589999999999986
No 302
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=52.69 E-value=2.2e+02 Score=27.46 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=27.4
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEec
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELC 225 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 225 (607)
..+.++|.||.+.|+.+.+. +..|+.++++|...+.+.
T Consensus 23 e~SGLTy~pd~~tLfaV~d~------------~~~i~els~~G~vlr~i~ 60 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDE------------PGEIYELSLDGKVLRRIP 60 (248)
T ss_dssp -EEEEEEETTTTEEEEEETT------------TTEEEEEETT--EEEEEE
T ss_pred CccccEEcCCCCeEEEEECC------------CCEEEEEcCCCCEEEEEe
Confidence 36789999999998888754 247889998877666653
No 303
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=52.49 E-value=2.5e+02 Score=29.78 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=23.0
Q ss_pred cceEEEEeC-CCC-eeecCCCCceeeeeeCCCCceEEEEEc
Q 007338 156 TAQLVLGSL-DGT-AKDFGTPAVYTAVEPSPDQKYVLITSM 194 (607)
Q Consensus 156 ~~~l~~~~~-~g~-~~~lt~~~~~~~~~~SpDg~~i~~~~~ 194 (607)
...|..+|. +++ .+++.... +..+.||+||++|++.+.
T Consensus 125 ~~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 125 SDFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTK 164 (443)
T ss_dssp TTEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S
T ss_pred CCCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeC
Confidence 345888888 564 55565333 567899999999999963
No 304
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=52.25 E-value=60 Score=35.32 Aligned_cols=47 Identities=6% Similarity=-0.174 Sum_probs=26.6
Q ss_pred hhHHHhccCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 547 SSLIFLARRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
...+|+++||-|+. .+.+..|.... ...+..-..+++.++|+.|++.
T Consensus 212 lv~~L~~qGf~V~~-iDwrgpg~s~~-~~~~ddY~~~~i~~al~~v~~~ 258 (532)
T TIGR01838 212 LVRWLVEQGHTVFV-ISWRNPDASQA-DKTFDDYIRDGVIAALEVVEAI 258 (532)
T ss_pred HHHHHHHCCcEEEE-EECCCCCcccc-cCChhhhHHHHHHHHHHHHHHh
Confidence 46799999999987 55544332111 1112223345567777777654
No 305
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=50.24 E-value=90 Score=32.18 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=39.2
Q ss_pred ccceEEccCCCEEEEEeecCcc----------cccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEE----------DNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~----------~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~ 102 (607)
...+.|.|||+ |++....... .........|+.+++++++.+.+...-. ..-.+.|++++++++
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~r-----np~Gl~~d~~G~l~~ 199 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQ-----NPYGHSVDSWGDVFF 199 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcC-----CCccceECCCCCEEE
Confidence 56899999995 5554331000 0000122579999999888776642211 134789999988865
Q ss_pred E
Q 007338 103 F 103 (607)
Q Consensus 103 ~ 103 (607)
.
T Consensus 200 t 200 (367)
T TIGR02604 200 C 200 (367)
T ss_pred E
Confidence 4
No 306
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=50.16 E-value=3.3e+02 Score=28.66 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=37.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
+++...|+|-..+|+++... + ..|-+||+..-..+.++-..+ + .++.+-+.|.|.+++.
T Consensus 155 YVR~g~~~~~~~hivvtGsY-------D--g~vrl~DtR~~~~~v~elnhg-~---pVe~vl~lpsgs~ias 213 (487)
T KOG0310|consen 155 YVRCGDISPANDHIVVTGSY-------D--GKVRLWDTRSLTSRVVELNHG-C---PVESVLALPSGSLIAS 213 (487)
T ss_pred eeEeeccccCCCeEEEecCC-------C--ceEEEEEeccCCceeEEecCC-C---ceeeEEEcCCCCEEEE
Confidence 78999999999999887643 3 455556776543444432222 1 2566777777777665
No 307
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=49.93 E-value=3.5e+02 Score=28.82 Aligned_cols=66 Identities=8% Similarity=0.049 Sum_probs=35.4
Q ss_pred eeecCcccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEE
Q 007338 294 LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIA 369 (607)
Q Consensus 294 l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~ 369 (607)
+.....+++.+.++|||..|+..+. + ++||++-.+..+.+...+-.... ...- -+.|++|++.+.-
T Consensus 443 ~~~d~~~ls~v~ysp~G~~lAvgs~--d--~~iyiy~Vs~~g~~y~r~~k~~g-s~it-----hLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 443 IHTDNEQLSVVRYSPDGAFLAVGSH--D--NHIYIYRVSANGRKYSRVGKCSG-SPIT-----HLDWSSDSQFLVS 508 (626)
T ss_pred EEecCCceEEEEEcCCCCEEEEecC--C--CeEEEEEECCCCcEEEEeeeecC-ceeE-----EeeecCCCceEEe
Confidence 3334667889999999998776542 2 35555444432122222211000 1111 1789999986543
No 308
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.73 E-value=2.2e+02 Score=31.85 Aligned_cols=73 Identities=12% Similarity=0.044 Sum_probs=41.6
Q ss_pred CCeeeeecCCCCC-cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 19 GPEKEVHGYPDGA-KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 19 g~~~~lt~~~~~~-~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
+..+.++.|.+.. .+...-|++---.|+.+... ++ -+=.+|+...+....+..-. +.+.++.|+|.
T Consensus 121 ~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ-------Dg--~vK~~DlR~~~S~~t~~~nS----ESiRDV~fsp~ 187 (839)
T KOG0269|consen 121 IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQ-------DG--TVKCWDLRSKKSKSTFRSNS----ESIRDVKFSPG 187 (839)
T ss_pred ccchhhhHhhhhccceeeeeeccCCccEEEecCC-------Cc--eEEEEeeecccccccccccc----hhhhceeeccC
Confidence 3445555444322 36677888877777766543 34 44455777766665553311 12568889987
Q ss_pred CeEEEEE
Q 007338 98 STLLIFT 104 (607)
Q Consensus 98 ~~~l~~~ 104 (607)
-...|++
T Consensus 188 ~~~~F~s 194 (839)
T KOG0269|consen 188 YGNKFAS 194 (839)
T ss_pred CCceEEE
Confidence 4444443
No 309
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=49.62 E-value=62 Score=22.08 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=22.9
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE 70 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~ 70 (607)
.+....|||....||.... +++|+++.+.
T Consensus 13 ~v~~~~w~P~mdLiA~~t~----------~g~v~v~Rl~ 41 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTE----------DGEVLVYRLN 41 (47)
T ss_pred cEEEEEECCCCCEEEEEEC----------CCeEEEEECC
Confidence 4778999999999998864 3567777773
No 310
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.57 E-value=50 Score=38.14 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=35.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecC-CeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNN-STLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~~ 104 (607)
.+...+|.-.-++|.-+.. ..+...+||+...++ ..+++... +...+.+.|.|+ ...++..
T Consensus 163 eI~~lsWNrkvqhILAS~s---------~sg~~~iWDlr~~~pii~ls~~~~---~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 163 EIKCLSWNRKVSHILASGS---------PSGRAVIWDLRKKKPIIKLSDTPG---RMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred cceEeccchhhhHHhhccC---------CCCCceeccccCCCcccccccCCC---ccceeeeeeCCCCceeeeee
Confidence 4677777777777655432 234556668876532 34433322 122568899998 4455554
No 311
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=47.77 E-value=26 Score=35.63 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=43.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+...+||||+..+++.+. .+.++++|+..|....+.+.... .+..+.|.|-++.+...
T Consensus 125 diydL~Ws~d~~~l~s~s~----------dns~~l~Dv~~G~l~~~~~dh~~----yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSGSV----------DNSVRLWDVHAGQLLAILDDHEH----YVQGVAWDPLNQYVASK 183 (434)
T ss_pred chhhhhccCCCceeeeeec----------cceEEEEEeccceeEeecccccc----ccceeecchhhhhhhhh
Confidence 5788999999999988764 36788899999987665433221 25578999887766553
No 312
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=47.72 E-value=82 Score=32.43 Aligned_cols=89 Identities=13% Similarity=0.131 Sum_probs=49.7
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcc----cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccC
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKI----NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFES 80 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~----~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~ 80 (607)
+|+|+.+|+ +.+..+|. +..++.. +...| --+.|+|-.-.+. +....+-++||++|+++-+...|-..
T Consensus 154 kD~W~fd~~----trkweql~-~~g~PS~RSGHRMvaw--K~~lilFGGFhd~-nr~y~YyNDvy~FdLdtykW~Kleps 225 (521)
T KOG1230|consen 154 KDLWLFDLK----TRKWEQLE-FGGGPSPRSGHRMVAW--KRQLILFGGFHDS-NRDYIYYNDVYAFDLDTYKWSKLEPS 225 (521)
T ss_pred hheeeeeec----cchheeec-cCCCCCCCccceeEEe--eeeEEEEcceecC-CCceEEeeeeEEEeccceeeeeccCC
Confidence 689999998 77777776 3433221 11222 2334444332221 11235568999999999887777432
Q ss_pred CCccccccccceEEe--cCCeEEEE
Q 007338 81 PDICLNAVFGSFVWV--NNSTLLIF 103 (607)
Q Consensus 81 ~~~~~~~~~~~~~Ws--pd~~~l~~ 103 (607)
..+ -..-+.++++ |++.++++
T Consensus 226 ga~--PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 226 GAG--PTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred CCC--CCCCCcceEEecCCCcEEEE
Confidence 111 1112455555 77887776
No 313
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=47.66 E-value=3.9e+02 Score=29.10 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=23.9
Q ss_pred EEEEeC-CCCeeecCC-C--CceeeeeeCCCCceEEEEE
Q 007338 159 LVLGSL-DGTAKDFGT-P--AVYTAVEPSPDQKYVLITS 193 (607)
Q Consensus 159 l~~~~~-~g~~~~lt~-~--~~~~~~~~SpDg~~i~~~~ 193 (607)
++..+. .|+++++.. + ..+..+.|+||++.|++.-
T Consensus 482 ~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eeeccccccceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 445555 567777643 2 2456899999999987753
No 314
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=47.05 E-value=50 Score=31.28 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=47.6
Q ss_pred EEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCC
Q 007338 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSI 564 (607)
Q Consensus 485 i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~ 564 (607)
......||..+.|..+ |+.=+. +. =++|..-. |-+..| +..+.+..+.+||.|+. -+
T Consensus 8 ~~l~~~DG~~l~~~~~-pA~~~~--~g--~~~va~a~-------------Gv~~~f---YRrfA~~a~~~Gf~Vlt-~d- 64 (281)
T COG4757 8 AHLPAPDGYSLPGQRF-PADGKA--SG--RLVVAGAT-------------GVGQYF---YRRFAAAAAKAGFEVLT-FD- 64 (281)
T ss_pred cccccCCCccCccccc-cCCCCC--CC--cEEecccC-------------CcchhH---hHHHHHHhhccCceEEE-Ee-
Confidence 5677889999999887 442111 11 34554221 111122 23456888999999997 22
Q ss_pred ceeccCCC-C----chhhH--HHHhhcHHHHHHHHHHh
Q 007338 565 PIIGEGLW-S----NWFQV--QRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 565 ~~~g~g~~-~----~~~~~--~~~~~~~~~~v~~~~~~ 595 (607)
.+|.|+. + +..|. .=--.|+-++|+++-+.
T Consensus 65 -yRG~g~S~p~~~~~~~~~~~DwA~~D~~aal~~~~~~ 101 (281)
T COG4757 65 -YRGIGQSRPASLSGSQWRYLDWARLDFPAALAALKKA 101 (281)
T ss_pred -cccccCCCccccccCccchhhhhhcchHHHHHHHHhh
Confidence 2454443 1 11121 11234677888887763
No 315
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=46.95 E-value=1.1e+02 Score=30.28 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=38.3
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCc-eeecccCCCccccccccceEEecCC-eEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGE-AKPLFESPDICLNAVFGSFVWVNNS-TLLIF 103 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~-~~~lt~~~~~~~~~~~~~~~Wspd~-~~l~~ 103 (607)
.++.-+|++|+..||...+ ..++.++...+.+ .+.+...++ .+..+..+.|+|.. +++-.
T Consensus 12 pitchAwn~drt~iAv~~~----------~~evhiy~~~~~~~w~~~htls~--Hd~~vtgvdWap~snrIvtc 73 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPN----------NHEVHIYSMLGADLWEPAHTLSE--HDKIVTGVDWAPKSNRIVTC 73 (361)
T ss_pred ceeeeeecCCCceEEeccC----------CceEEEEEecCCCCceeceehhh--hCcceeEEeecCCCCceeEc
Confidence 4788899999999998864 3566666666665 222222221 12235678999985 55444
No 316
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=46.45 E-value=38 Score=32.74 Aligned_cols=16 Identities=44% Similarity=0.667 Sum_probs=10.4
Q ss_pred HHHhccCeEEEeCCCCce
Q 007338 549 LIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 549 q~la~~GY~Vl~~~~~~~ 566 (607)
+.| +++|.|+. ++.+-
T Consensus 49 ~~l-~~~~~vi~-~D~~G 64 (278)
T TIGR03056 49 PPL-ARSFRVVA-PDLPG 64 (278)
T ss_pred HHH-hhCcEEEe-ecCCC
Confidence 444 45799998 65543
No 317
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=45.91 E-value=89 Score=30.98 Aligned_cols=18 Identities=11% Similarity=0.111 Sum_probs=13.0
Q ss_pred eeeeeeCCCCceEEEEEc
Q 007338 177 YTAVEPSPDQKYVLITSM 194 (607)
Q Consensus 177 ~~~~~~SpDg~~i~~~~~ 194 (607)
+.-.+|++|+..|++..+
T Consensus 13 itchAwn~drt~iAv~~~ 30 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPN 30 (361)
T ss_pred eeeeeecCCCceEEeccC
Confidence 345688888888887743
No 318
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=45.86 E-value=2.3e+02 Score=29.80 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=33.8
Q ss_pred ccceeeEcCCCcEEEEEEeccccceEEEEEcCCCCCCCceEee----ecccccc----c---c-CCCCCCeeeCCCCCEE
Q 007338 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGSKDVAPRVLF----DRVFENV----Y---S-DPGSPMMTRTSTGTNV 367 (607)
Q Consensus 300 ~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~----~~~~~~~----~---~-~~~~~~~~~~~dg~~~ 367 (607)
-+..+..|-|.+.|++..|.. ..+..+|++.. .+++++- .+.+... . . ..|..+++.|-||+.|
T Consensus 313 LitDI~iSlDDrfLYvs~W~~---GdvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRl 388 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLH---GDVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRL 388 (461)
T ss_dssp ----EEE-TTS-EEEEEETTT---TEEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEE
T ss_pred ceEeEEEccCCCEEEEEcccC---CcEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEE
Confidence 456788999999888877643 36777888776 4566652 2211100 0 0 0122457789999999
Q ss_pred EEEee
Q 007338 368 IAKIK 372 (607)
Q Consensus 368 ~~~~~ 372 (607)
|+++.
T Consensus 389 YvTnS 393 (461)
T PF05694_consen 389 YVTNS 393 (461)
T ss_dssp EEE--
T ss_pred EEEee
Confidence 98763
No 319
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=45.65 E-value=63 Score=28.64 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=35.8
Q ss_pred EEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEe
Q 007338 485 IKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLA 560 (607)
Q Consensus 485 i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~ 560 (607)
|+.+..||..|.=.=| .++| |+|+|+||.-... |-. .....+..+.+-|-..||.|+-
T Consensus 72 ~tL~dedg~sisLkki-----t~nk----~vV~f~YP~asTP--------GCT-kQaCgFRDnY~k~kka~aeV~G 129 (211)
T KOG0855|consen 72 FTLKDEDGKSISLKKI-----TGNK----PVVLFFYPAASTP--------GCT-KQACGFRDNYEKFKKAGAEVIG 129 (211)
T ss_pred cccccCCCCeeeeeee-----cCCC----cEEEEEeccCCCC--------Ccc-cccccccccHHHHhhcCceEEe
Confidence 5667788887654333 3333 9999999863211 111 1222234567888889999995
No 320
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=44.99 E-value=45 Score=32.73 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=15.3
Q ss_pred hHHHhccCeEEEeCCCCceec
Q 007338 548 SLIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g 568 (607)
...|+++||.|+. ++.|.+|
T Consensus 38 ~~~L~~~g~~vi~-~dl~g~G 57 (273)
T PLN02211 38 RCLMENSGYKVTC-IDLKSAG 57 (273)
T ss_pred HHHHHhCCCEEEE-ecccCCC
Confidence 4578889999998 7776554
No 321
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=44.71 E-value=1.1e+02 Score=29.83 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=20.5
Q ss_pred ccceeeEcCCCcEEEEEEeccccceEEEEEcCCC
Q 007338 300 RFRSVSWCDDSLALVNETWYKTSQTRTWLVCPGS 333 (607)
Q Consensus 300 ~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~dl~~ 333 (607)
+...++||||+..|++... ...+.++|+.+
T Consensus 45 QWRkl~WSpD~tlLa~a~S----~G~i~vfdl~g 74 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAES----TGTIRVFDLMG 74 (282)
T ss_pred hheEEEECCCCcEEEEEcC----CCeEEEEeccc
Confidence 4556889999887776542 23566678776
No 322
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.55 E-value=1.1e+02 Score=32.05 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=37.6
Q ss_pred CcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 31 AKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 31 ~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+...+||||.+.||..+. +..-++ ++..+.++++.-...-...+..+-+|.|+....+.|.+
T Consensus 67 G~I~SIkFSlDnkilAVQR~--------~~~v~f--~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~ 130 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRT--------SKTVDF--CNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFIT 130 (657)
T ss_pred CceeEEEeccCcceEEEEec--------CceEEE--EecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEe
Confidence 36788999999999999875 233444 45544443322111111112225589999776676664
No 323
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=44.04 E-value=2.5e+02 Score=28.61 Aligned_cols=124 Identities=21% Similarity=0.311 Sum_probs=0.0
Q ss_pred CCCCeeeeecCCCCCc-ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEE
Q 007338 17 SLGPEKEVHGYPDGAK-INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVW 94 (607)
Q Consensus 17 ~~g~~~~lt~~~~~~~-~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~W 94 (607)
++++..++..+.+... ++...|++ .-.+|++.-+ -.|-++|+.+|... .++.... +..+.-
T Consensus 246 ~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwD---------HTIk~WDletg~~~~~~~~~ks------l~~i~~ 308 (423)
T KOG0313|consen 246 EGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWD---------HTIKVWDLETGGLKSTLTTNKS------LNCISY 308 (423)
T ss_pred cccccCceEEecccccceeeEEEcC--CCceEeeccc---------ceEEEEEeecccceeeeecCcc------eeEeec
Q ss_pred ecCCeEEEEEecCCCCCCCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC---CC---Ce
Q 007338 95 VNNSTLLIFTIPSSRRDPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL---DG---TA 168 (607)
Q Consensus 95 spd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~g---~~ 168 (607)
+|..++|+. |. ...+|-++|. +| ..
T Consensus 309 ~~~~~Ll~~--------------------------gs-----------------------sdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 309 SPLSKLLAS--------------------------GS-----------------------SDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred ccccceeee--------------------------cC-----------------------CCCceeecCCCCCCCceeEE
Q ss_pred eecCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCC
Q 007338 169 KDFGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDG 218 (607)
Q Consensus 169 ~~lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 218 (607)
+-+.....+..+.|||-..++++....+. .+-+||+.+
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~------------t~klWDvRS 377 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDN------------TVKLWDVRS 377 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEecCC------------eEEEEEecc
No 324
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=43.59 E-value=93 Score=22.79 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=19.0
Q ss_pred CceEEEEEECCCCceEEEEEEcCCC-CCCCCCCCCCEEEEecc
Q 007338 480 LQKEMIKYQRKDGVPLTATLYLPPG-YDQSKDGPLPCLFWAYP 521 (607)
Q Consensus 480 ~~~e~i~~~s~DG~~i~g~l~~P~~-~~~~k~y~lP~iv~~y~ 521 (607)
.+.|...+++.||.-|.-+=+.+.. -...+ .+.|+|+..|+
T Consensus 10 Y~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~-~~k~pVll~HG 51 (63)
T PF04083_consen 10 YPCEEHEVTTEDGYILTLHRIPPGKNSSNQN-KKKPPVLLQHG 51 (63)
T ss_dssp ---EEEEEE-TTSEEEEEEEE-SBTTCTTTT-TT--EEEEE--
T ss_pred CCcEEEEEEeCCCcEEEEEEccCCCCCcccC-CCCCcEEEECC
Confidence 3789999999999766655443333 12211 12366666553
No 325
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=82 Score=34.19 Aligned_cols=52 Identities=29% Similarity=0.530 Sum_probs=36.4
Q ss_pred eeEEEeccCCCCCCCeeeeecCC-CCCccc-ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce
Q 007338 6 GIGIHRLLPDDSLGPEKEVHGYP-DGAKIN-FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (607)
Q Consensus 6 ~~~~~~~~~~~~~g~~~~lt~~~-~~~~~~-~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~ 74 (607)
+|-||++. ..+|-.+| .+...+ +..|-|||+.||+--. ...|-+.|++.|..
T Consensus 43 elli~R~n-------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k----------dG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 43 ELLIHRLN-------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK----------DGTIRLHDVEKGGR 96 (665)
T ss_pred cEEEEEec-------cceeEeccCCCCccceeeeecCCCCEEEEEec----------CCeEEEEEccCCCc
Confidence 48889874 33333344 333455 9999999999999763 26888899988764
No 326
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=43.17 E-value=2.8e+02 Score=27.34 Aligned_cols=127 Identities=15% Similarity=0.212 Sum_probs=72.5
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCcee-ecccCCCccccccccceEEecCCeEEEEEecCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK-PLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRR 110 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~-~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~ 110 (607)
.+..-.|||=...=-.+... ....++-+-|+++|.-. .|..+.+ .+-.+.|+|...++..+...+
T Consensus 145 ~VYshamSp~a~sHcLiA~g-------tr~~~VrLCDi~SGs~sH~LsGHr~-----~vlaV~Wsp~~e~vLatgsaD-- 210 (397)
T KOG4283|consen 145 KVYSHAMSPMAMSHCLIAAG-------TRDVQVRLCDIASGSFSHTLSGHRD-----GVLAVEWSPSSEWVLATGSAD-- 210 (397)
T ss_pred eeehhhcChhhhcceEEEEe-------cCCCcEEEEeccCCcceeeeccccC-----ceEEEEeccCceeEEEecCCC--
Confidence 47777888855421112111 23478888899999754 4432222 266899999977665542111
Q ss_pred CCCCCccCCCCCeeeecCCccccccccccccccCcccccceeee-ccceEEEEeC-CCC-eeec-CCC---CceeeeeeC
Q 007338 111 DPPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYY-TTAQLVLGSL-DGT-AKDF-GTP---AVYTAVEPS 183 (607)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~-~g~-~~~l-t~~---~~~~~~~~S 183 (607)
|.. | .|+.. ..+.+..+|. +++ +..+ +.. +.+..++|+
T Consensus 211 -------------------g~i---r-------------lWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 211 -------------------GAI---R-------------LWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred -------------------ceE---E-------------EEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 110 0 11111 2356677777 442 2222 222 346689999
Q ss_pred CCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 184 PDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 184 pDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
.||++++....+ .++.+|+...|+
T Consensus 256 Sd~~~l~~~gtd-------------~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 256 SDARYLASCGTD-------------DRIRVWNMESGR 279 (397)
T ss_pred ccchhhhhccCc-------------cceEEeecccCc
Confidence 999999877542 256778877664
No 327
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.71 E-value=5.4e+02 Score=28.99 Aligned_cols=116 Identities=12% Similarity=0.200 Sum_probs=64.7
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
.+..+.|++---.|+++...+ ..+-.||+...+-.... .+.-..+|.+.|||--..
T Consensus 135 s~~~ldfh~tep~iliSGSQD------------g~vK~~DlR~~~S~~t~------------~~nSESiRDV~fsp~~~~ 190 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQD------------GTVKCWDLRSKKSKSTF------------RSNSESIRDVKFSPGYGN 190 (839)
T ss_pred ceeeeeeccCCccEEEecCCC------------ceEEEEeeecccccccc------------cccchhhhceeeccCCCc
Confidence 456788888777787775432 25667777655333221 122244677999986542
Q ss_pred eEEEEEeecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEEc
Q 007338 256 TLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (607)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~d 330 (607)
.|+..-++|. +-.||. .....-..+++.+.+.+....|+|++..|+... ++..-+||-++
T Consensus 191 --~F~s~~dsG~----------lqlWDl-Rqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG--RDK~vkiWd~t 250 (839)
T KOG0269|consen 191 --KFASIHDSGY----------LQLWDL-RQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG--RDKMVKIWDMT 250 (839)
T ss_pred --eEEEecCCce----------EEEeec-cCchhHHHHhhcccCceEEEeecCCCceeeecC--CCccEEEEecc
Confidence 3554444442 222232 011001124555667788899999877777653 34556777553
No 328
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=42.52 E-value=49 Score=35.97 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=28.8
Q ss_pred EEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 64 VWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 64 L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
++..+...++.+++...+.+ .++..+.|+||++.+|+.+
T Consensus 482 ~~~~~~~~g~~~rf~~~P~g---aE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 482 VWAYDPDTGELKRFLVGPNG---AEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eeeccccccceeeeccCCCC---cccccceECCCCCEEEEEE
Confidence 66677788888888644443 3577899999988877754
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=42.40 E-value=51 Score=20.62 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=16.1
Q ss_pred cccceEEccCCCEEEEEee
Q 007338 32 KINFVSWSPDGKRIAFSVR 50 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~ 50 (607)
.+....|+|+++.|+-...
T Consensus 13 ~i~~i~~~~~~~~~~s~~~ 31 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSS 31 (39)
T ss_dssp SEEEEEEETTSSEEEEEET
T ss_pred cEEEEEEecccccceeeCC
Confidence 6899999999998877653
No 330
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=42.19 E-value=67 Score=31.98 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=10.7
Q ss_pred HHhccCeEEEeCCCCc
Q 007338 550 IFLARRFAVLAGPSIP 565 (607)
Q Consensus 550 ~la~~GY~Vl~~~~~~ 565 (607)
++..++|.|+. ++.+
T Consensus 48 ~~~~~~~~vi~-~D~~ 62 (306)
T TIGR01249 48 FFDPETYRIVL-FDQR 62 (306)
T ss_pred ccCccCCEEEE-ECCC
Confidence 45568999998 5553
No 331
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=41.94 E-value=3.5e+02 Score=26.57 Aligned_cols=76 Identities=17% Similarity=0.111 Sum_probs=54.0
Q ss_pred CCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEec
Q 007338 17 SLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVN 96 (607)
Q Consensus 17 ~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wsp 96 (607)
.+|+.+++. +..+........-|||.. ++.. ....|-.+|.++.+.++.+--.+ ..++......|.+
T Consensus 91 ~tGev~~yp-Lg~Ga~Phgiv~gpdg~~--Witd---------~~~aI~R~dpkt~evt~f~lp~~-~a~~nlet~vfD~ 157 (353)
T COG4257 91 ATGEVETYP-LGSGASPHGIVVGPDGSA--WITD---------TGLAIGRLDPKTLEVTRFPLPLE-HADANLETAVFDP 157 (353)
T ss_pred CCCceEEEe-cCCCCCCceEEECCCCCe--eEec---------CcceeEEecCcccceEEeecccc-cCCCcccceeeCC
Confidence 588888887 777778889999999985 4443 23489999999988765531111 1233456788888
Q ss_pred CCeEEEEEe
Q 007338 97 NSTLLIFTI 105 (607)
Q Consensus 97 d~~~l~~~~ 105 (607)
.|.+.|...
T Consensus 158 ~G~lWFt~q 166 (353)
T COG4257 158 WGNLWFTGQ 166 (353)
T ss_pred CccEEEeec
Confidence 899988753
No 332
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=41.61 E-value=57 Score=35.04 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=22.6
Q ss_pred EEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEecc
Q 007338 484 MIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (607)
Q Consensus 484 ~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~ 521 (607)
...|.+..|.+++...-.|++- +.| |.||++||
T Consensus 177 ~~~~~~~~~~~l~~~~~gp~~~-~~k----~~VVLlHG 209 (481)
T PLN03087 177 CTSWLSSSNESLFVHVQQPKDN-KAK----EDVLFIHG 209 (481)
T ss_pred eeeeEeeCCeEEEEEEecCCCC-CCC----CeEEEECC
Confidence 3466666778999999988852 212 66777664
No 333
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.99 E-value=2.7e+02 Score=28.91 Aligned_cols=56 Identities=18% Similarity=0.265 Sum_probs=40.5
Q ss_pred ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC-CeEEEE
Q 007338 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN-STLLIF 103 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd-~~~l~~ 103 (607)
...|.-.-+.|.++... ...+-+||+++|++.+.+.+..+. +..+.|.|. ..+++.
T Consensus 248 ~Ls~n~~~~nVLaSgsa---------D~TV~lWD~~~g~p~~s~~~~~k~----Vq~l~wh~~~p~~LLs 304 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSA---------DKTVKLWDVDTGKPKSSITHHGKK----VQTLEWHPYEPSVLLS 304 (463)
T ss_pred HHHhccccceeEEecCC---------CceEEEEEcCCCCcceehhhcCCc----eeEEEecCCCceEEEe
Confidence 56777777788777643 357788899999998776544433 789999987 555554
No 334
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=40.98 E-value=3.8e+02 Score=26.73 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=33.7
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
.+..+++.|-|+ |+.+...+ ..+.+||+-.|+...+..+ ...+..+.|+|.|..
T Consensus 129 ~Vt~lsiHPS~K-LALsVg~D------------~~lr~WNLV~Gr~a~v~~L-------------~~~at~v~w~~~Gd~ 182 (362)
T KOG0294|consen 129 QVTDLSIHPSGK-LALSVGGD------------QVLRTWNLVRGRVAFVLNL-------------KNKATLVSWSPQGDH 182 (362)
T ss_pred ccceeEecCCCc-eEEEEcCC------------ceeeeehhhcCccceeecc-------------CCcceeeEEcCCCCE
Confidence 467889999876 44443322 2577888876655554432 122235899999984
No 335
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=39.87 E-value=65 Score=30.07 Aligned_cols=18 Identities=22% Similarity=0.109 Sum_probs=11.6
Q ss_pred HHHhccCeEEEeCCCCceec
Q 007338 549 LIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 549 q~la~~GY~Vl~~~~~~~~g 568 (607)
+.| ++||.|+. ++.|-.|
T Consensus 34 ~~l-~~~~~v~~-~d~~G~G 51 (251)
T TIGR02427 34 PAL-TPDFRVLR-YDKRGHG 51 (251)
T ss_pred HHh-hcccEEEE-ecCCCCC
Confidence 344 57999998 6654433
No 336
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=38.64 E-value=79 Score=36.09 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=15.6
Q ss_pred hHHHhccCeEEEeCCCCceec
Q 007338 548 SLIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g 568 (607)
.+.|+++||.|+. ++.|.+|
T Consensus 469 A~~La~~Gy~VIa-iDlpGHG 488 (792)
T TIGR03502 469 AGTLAAAGVATIA-IDHPLHG 488 (792)
T ss_pred HHHHHhCCcEEEE-eCCCCCC
Confidence 5688899999998 7766555
No 337
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=38.22 E-value=92 Score=31.28 Aligned_cols=88 Identities=16% Similarity=0.069 Sum_probs=45.2
Q ss_pred EEECCCCceEE-EEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCC-chhHHHhccCeEEEeCCC
Q 007338 486 KYQRKDGVPLT-ATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTP-TSSLIFLARRFAVLAGPS 563 (607)
Q Consensus 486 ~~~s~DG~~i~-g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~-~~~q~la~~GY~Vl~~~~ 563 (607)
.++.+||-.+. .|..-|.. + + .|+||..|+ ..|+.+. .+- .-+..+..+||.|+. .+
T Consensus 53 ~v~~pdg~~~~ldw~~~p~~--~--~--~P~vVl~HG-----------L~G~s~s---~y~r~L~~~~~~rg~~~Vv-~~ 111 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPRA--A--K--KPLVVLFHG-----------LEGSSNS---PYARGLMRALSRRGWLVVV-FH 111 (345)
T ss_pred EEEcCCCCEEEEeeccCccc--c--C--CceEEEEec-----------cCCCCcC---HHHHHHHHHHHhcCCeEEE-Ee
Confidence 45556776544 45444443 2 2 277777664 2233321 111 124577889999997 43
Q ss_pred CceeccCCCCc---hhhHHHHhhcHHHHHHHHHHhc
Q 007338 564 IPIIGEGLWSN---WFQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 564 ~~~~g~g~~~~---~~~~~~~~~~~~~~v~~~~~~~ 596 (607)
. +|=+++++ .-|-.-...|+...++||-.++
T Consensus 112 ~--Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~ 145 (345)
T COG0429 112 F--RGCSGEANTSPRLYHSGETEDIRFFLDWLKARF 145 (345)
T ss_pred c--ccccCCcccCcceecccchhHHHHHHHHHHHhC
Confidence 3 44222211 1111122578888888887654
No 338
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=38.18 E-value=29 Score=35.54 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=18.1
Q ss_pred EEEEc-CCCCCCCCCCCCCEEEEeccC
Q 007338 497 ATLYL-PPGYDQSKDGPLPCLFWAYPE 522 (607)
Q Consensus 497 g~l~~-P~~~~~~k~y~lP~iv~~y~~ 522 (607)
-||++ |..+++..+ |+|||.|||
T Consensus 108 ~Wlvk~P~~~~pk~D---pVlIYlHGG 131 (374)
T PF10340_consen 108 YWLVKAPNRFKPKSD---PVLIYLHGG 131 (374)
T ss_pred EEEEeCCcccCCCCC---cEEEEEcCC
Confidence 58888 888877433 999999865
No 339
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=37.57 E-value=70 Score=35.84 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=40.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
.+....||+||.+|+-- .....|.++.+++++.+-| +. ++..+-.+.||||+.++...
T Consensus 253 ~V~~L~fS~~G~~LlSG----------G~E~VLv~Wq~~T~~kqfL---PR--Lgs~I~~i~vS~ds~~~sl~ 310 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSG----------GREGVLVLWQLETGKKQFL---PR--LGSPILHIVVSPDSDLYSLV 310 (792)
T ss_pred ccceeEEecCCceEeec----------ccceEEEEEeecCCCcccc---cc--cCCeeEEEEEcCCCCeEEEE
Confidence 57889999999886432 2347888889999985444 22 23346689999998765544
No 340
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.02 E-value=3.9e+02 Score=25.70 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=36.4
Q ss_pred eeecCcccceeeEcCC-Cc---EEEEEEeccccceEEEEEcCCCCCCCceEeeeccccccccCCCCCCeeeCCCCCEEEE
Q 007338 294 LHKLDLRFRSVSWCDD-SL---ALVNETWYKTSQTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGSPMMTRTSTGTNVIA 369 (607)
Q Consensus 294 l~~~~~~~~~~~ws~D-g~---~l~~~~~~~~~~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~dg~~~~~ 369 (607)
|..+.--+..++|+|. |. .++.. ..+++--||..+-+..+-+.++|.+ +.+..- .++||..|..|.+
T Consensus 203 l~~H~dwVRDVAwaP~~gl~~s~iAS~--SqDg~viIwt~~~e~e~wk~tll~~--f~~~~w-----~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 203 LEGHKDWVRDVAWAPSVGLPKSTIASC--SQDGTVIIWTKDEEYEPWKKTLLEE--FPDVVW-----RVSWSLSGNILAV 273 (299)
T ss_pred hhhcchhhhhhhhccccCCCceeeEEe--cCCCcEEEEEecCccCccccccccc--CCcceE-----EEEEeccccEEEE
Confidence 3333334568999997 33 23333 2345667788875542222333322 111111 1789999987666
Q ss_pred Ee
Q 007338 370 KI 371 (607)
Q Consensus 370 ~~ 371 (607)
..
T Consensus 274 s~ 275 (299)
T KOG1332|consen 274 SG 275 (299)
T ss_pred ec
Confidence 54
No 341
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=37.01 E-value=94 Score=24.62 Aligned_cols=49 Identities=12% Similarity=-0.112 Sum_probs=31.3
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE 70 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~ 70 (607)
|+-+|.. +++.+.|. .+-...+..++|||++.|++.-. ....|..+=++
T Consensus 39 ll~ydp~----t~~~~vl~--~~L~fpNGVals~d~~~vlv~Et---------~~~Ri~rywl~ 87 (89)
T PF03088_consen 39 LLRYDPS----TKETTVLL--DGLYFPNGVALSPDESFVLVAET---------GRYRILRYWLK 87 (89)
T ss_dssp EEEEETT----TTEEEEEE--EEESSEEEEEE-TTSSEEEEEEG---------GGTEEEEEESS
T ss_pred EEEEECC----CCeEEEeh--hCCCccCeEEEcCCCCEEEEEec---------cCceEEEEEEe
Confidence 4445554 66665554 23335788999999999988764 35667766555
No 342
>PRK10673 acyl-CoA esterase; Provisional
Probab=36.29 E-value=75 Score=30.28 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=20.2
Q ss_pred ccCeEEEeCCCCceeccCCC--CchhhHHHHhhcHHHHHHHH
Q 007338 553 ARRFAVLAGPSIPIIGEGLW--SNWFQVQRLLLKKLFDVEWL 592 (607)
Q Consensus 553 ~~GY~Vl~~~~~~~~g~g~~--~~~~~~~~~~~~~~~~v~~~ 592 (607)
+++|-|+. .+.|.+ |.. ....-..++.+|+...+++|
T Consensus 40 ~~~~~vi~-~D~~G~--G~s~~~~~~~~~~~~~d~~~~l~~l 78 (255)
T PRK10673 40 VNDHDIIQ-VDMRNH--GLSPRDPVMNYPAMAQDLLDTLDAL 78 (255)
T ss_pred hhCCeEEE-ECCCCC--CCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 46799987 666443 332 11112245566666666654
No 343
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=35.84 E-value=1.2e+02 Score=20.31 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=22.0
Q ss_pred ccceEEccCCC---EEEEEeecCcccccCCCceeEEEEECCCC
Q 007338 33 INFVSWSPDGK---RIAFSVRVDEEDNVSSCKLRVWIADAETG 72 (607)
Q Consensus 33 ~~~~~~SPDG~---~laf~~~~~~~~~~~~~~~~L~v~d~~~g 72 (607)
++..+|||+.. .|+|+- ....+.++|+.++
T Consensus 3 vR~~kFsP~~~~~DLL~~~E----------~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAE----------HQGRVHIVDTRSN 35 (43)
T ss_pred eEEEEeCCCCCcccEEEEEc----------cCCeEEEEEcccC
Confidence 67789998554 777763 3578999999853
No 344
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=35.60 E-value=3.7e+02 Score=25.04 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=20.5
Q ss_pred eCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE
Q 007338 182 PSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR 222 (607)
Q Consensus 182 ~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 222 (607)
...++..|++.. . ...|+.+|+++|++.
T Consensus 208 ~~~~~~~l~~~~-~------------~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 208 PSVDGGTLYVTS-S------------DGRLYALDLKTGKVV 235 (238)
T ss_dssp EECCCTEEEEEE-T------------TTEEEEEETTTTEEE
T ss_pred ceeeCCEEEEEe-C------------CCEEEEEECCCCCEE
Confidence 456778888776 2 137999999999754
No 345
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=34.65 E-value=5.2e+02 Score=26.47 Aligned_cols=119 Identities=13% Similarity=0.273 Sum_probs=60.3
Q ss_pred CceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeE-EeccCCCCCCCCcccccccCCCCcceeecCC
Q 007338 175 AVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVR-ELCDLPPAEDIPVCYNSVREGMRSISWRADK 253 (607)
Q Consensus 175 ~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg 253 (607)
..+..+.|||.-+.++++..- ...|.+||+..+..+ .+... .-...+..++|+.+-
T Consensus 258 ~SVEDLqWSptE~~vfaScS~------------DgsIrIWDiRs~~~~~~~~~k-----------Ah~sDVNVISWnr~~ 314 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSC------------DGSIRIWDIRSGPKKAAVSTK-----------AHNSDVNVISWNRRE 314 (440)
T ss_pred cchhhhccCCccCceEEeeec------------CceEEEEEecCCCccceeEee-----------ccCCceeeEEccCCc
Confidence 366799999987777776432 236888999876222 22210 001112248888776
Q ss_pred CceEEEEEeecCCCCccccCCCceEEeccCCCCCCCCcee-eeecCcccceeeEcCCCcEEEEEEeccccceEEEEEc
Q 007338 254 PSTLYWVEAQDRGDANVEVSPRDIIYTQPAEPAEGEKPEI-LHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLVC 330 (607)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~d 330 (607)
. .|+ ...+.| .+.+++...+..+++.. ...+...++.+.|+|....++.... .+.+-.||-+.
T Consensus 315 ~-lLa--sG~DdG----------t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-~D~QitiWDls 378 (440)
T KOG0302|consen 315 P-LLA--SGGDDG----------TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-EDNQITIWDLS 378 (440)
T ss_pred c-eee--ecCCCc----------eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-CCCcEEEEEee
Confidence 5 222 111222 23333321233223333 3345667889999987554333221 22334555433
No 346
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=34.54 E-value=5e+02 Score=26.19 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=24.1
Q ss_pred cccceeeEcCCCcEEEEEEecc---ccceEEEEEcCCC
Q 007338 299 LRFRSVSWCDDSLALVNETWYK---TSQTRTWLVCPGS 333 (607)
Q Consensus 299 ~~~~~~~ws~Dg~~l~~~~~~~---~~~~~l~~~dl~~ 333 (607)
..++.+.+-+|++.++.++... ....+||.+++..
T Consensus 215 ~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 215 NGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred CCceeEEEECCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 4566788888888777665421 2456888888865
No 347
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.25 E-value=4.9e+02 Score=26.01 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=12.8
Q ss_pred eeeeeCCCCceEEEEE
Q 007338 178 TAVEPSPDQKYVLITS 193 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~ 193 (607)
..+.|+|.|.++++..
T Consensus 172 t~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSG 187 (362)
T ss_pred eeeEEcCCCCEEEEEe
Confidence 4589999999877764
No 348
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=34.19 E-value=34 Score=29.21 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=13.6
Q ss_pred hhHHHhccCeEEEeCCCC
Q 007338 547 SSLIFLARRFAVLAGPSI 564 (607)
Q Consensus 547 ~~q~la~~GY~Vl~~~~~ 564 (607)
..+.|+++||.|+. ++.
T Consensus 18 ~~~~l~~~G~~v~~-~~~ 34 (145)
T PF12695_consen 18 LAEALAEQGYAVVA-FDY 34 (145)
T ss_dssp HHHHHHHTTEEEEE-ESC
T ss_pred HHHHHHHCCCEEEE-Eec
Confidence 36799999999998 443
No 349
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=32.57 E-value=4.3e+02 Score=24.86 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=16.2
Q ss_pred cccceEEccCCCEEEEEee
Q 007338 32 KINFVSWSPDGKRIAFSVR 50 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~ 50 (607)
.+....|||+|+.||--++
T Consensus 91 siyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 91 SIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cEEEEEecCccCeEEecCC
Confidence 5788999999999987765
No 350
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=32.27 E-value=7.1e+02 Score=27.33 Aligned_cols=86 Identities=21% Similarity=0.377 Sum_probs=45.9
Q ss_pred eeeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCC-----CEEEEEeecCcccccCCCceeEEEEECCCCceeecc
Q 007338 4 FTGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDG-----KRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLF 78 (607)
Q Consensus 4 ~~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG-----~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt 78 (607)
+++|++|+=-. .=|..+.|.+|. .+....|+|-+ ..||... +.--.+|.+-..+-+...+.
T Consensus 35 LT~L~l~~gE~--kfGds~viGqFE---hV~GlsW~P~~~~~~paLLAVQH---------kkhVtVWqL~~s~~e~~K~l 100 (671)
T PF15390_consen 35 LTDLQLHNGEP--KFGDSKVIGQFE---HVHGLSWAPPCTADTPALLAVQH---------KKHVTVWQLCPSTTERNKLL 100 (671)
T ss_pred EEeeeeeCCcc--ccCCccEeeccc---eeeeeeecCcccCCCCceEEEec---------cceEEEEEeccCccccccce
Confidence 45666665322 124555666543 48899999964 3444433 34566777665443332221
Q ss_pred -----cCCCccccccccceEEecCCeEEEEE
Q 007338 79 -----ESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 79 -----~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
...+ .+--...++.|.|.+.++...
T Consensus 101 ~sQtcEi~e-~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 101 MSQTCEIRE-PFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred eeeeeeccC-CcccCCCcccccCCCceEEEE
Confidence 1111 000012378899998887765
No 351
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=32.19 E-value=5.9e+02 Score=26.33 Aligned_cols=144 Identities=15% Similarity=0.085 Sum_probs=78.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRD 111 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~ 111 (607)
.......+++|+++ |..+. ....+.++|.++.....-..... ....+.++++++.++.+-...
T Consensus 75 ~p~~i~v~~~~~~v-yv~~~--------~~~~v~vid~~~~~~~~~~~vG~-----~P~~~~~~~~~~~vYV~n~~~--- 137 (381)
T COG3391 75 YPAGVAVNPAGNKV-YVTTG--------DSNTVSVIDTATNTVLGSIPVGL-----GPVGLAVDPDGKYVYVANAGN--- 137 (381)
T ss_pred cccceeeCCCCCeE-EEecC--------CCCeEEEEcCcccceeeEeeecc-----CCceEEECCCCCEEEEEeccc---
Confidence 34567888888875 44442 34788888866654432211111 145788888876655531100
Q ss_pred CCCCccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC-CCCeee-cCCCCceeeeeeCCCCceE
Q 007338 112 PPKKTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL-DGTAKD-FGTPAVYTAVEPSPDQKYV 189 (607)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~g~~~~-lt~~~~~~~~~~SpDg~~i 189 (607)
....+.+++. +++... +.....-..+.++|+|+++
T Consensus 138 -------------------------------------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~v 174 (381)
T COG3391 138 -------------------------------------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKV 174 (381)
T ss_pred -------------------------------------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeE
Confidence 0123444444 232211 1111122578999999999
Q ss_pred EEEEccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCc
Q 007338 190 LITSMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPS 255 (607)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~ 255 (607)
+..... ...|.++|.++..+.+ ..... ......++..+.++|||+.
T Consensus 175 yv~~~~------------~~~v~vi~~~~~~v~~-~~~~~-------~~~~~~~P~~i~v~~~g~~ 220 (381)
T COG3391 175 YVTNSD------------DNTVSVIDTSGNSVVR-GSVGS-------LVGVGTGPAGIAVDPDGNR 220 (381)
T ss_pred EEEecC------------CCeEEEEeCCCcceec-ccccc-------ccccCCCCceEEECCCCCE
Confidence 888521 2368888877665553 21000 0011234456999999984
No 352
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=31.98 E-value=3.9e+02 Score=30.32 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=32.7
Q ss_pred ccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCC--Cceeecc--cCCCccccccccceEEecCCeEEEE
Q 007338 33 INFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAET--GEAKPLF--ESPDICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 33 ~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~--g~~~~lt--~~~~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
....++||.++++|-.-. +|+ |.++.--+ ++...-| .... +.+..+.||+||..++.
T Consensus 208 ~t~~~~spn~~~~Aa~d~--------dGr--I~vw~d~~~~~~~~t~t~lHWH~----~~V~~L~fS~~G~~LlS 268 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDS--------DGR--ILVWRDFGSSDDSETCTLLHWHH----DEVNSLSFSSDGAYLLS 268 (792)
T ss_pred ceeEEeccccceEEEecc--------CCc--EEEEeccccccccccceEEEecc----cccceeEEecCCceEee
Confidence 456899999999887643 344 55543322 2221111 1111 23667888888887775
No 353
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=31.91 E-value=88 Score=29.45 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=10.1
Q ss_pred hccCeEEEeCCCCcee
Q 007338 552 LARRFAVLAGPSIPII 567 (607)
Q Consensus 552 a~~GY~Vl~~~~~~~~ 567 (607)
.++||.|+. ++.|-.
T Consensus 36 l~~~~~vi~-~D~~G~ 50 (257)
T TIGR03611 36 LTQRFHVVT-YDHRGT 50 (257)
T ss_pred HHhccEEEE-EcCCCC
Confidence 356899998 665433
No 354
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=31.29 E-value=7.3e+02 Score=27.17 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=34.8
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeE
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTL 100 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~ 100 (607)
.++..+..|.|.+||--+. ++. +-+|-++||.-.+.+...+ .+..++|.|.+.+
T Consensus 402 ~Vr~iSvdp~G~wlasGsd--------DGt--vriWEi~TgRcvr~~~~d~-----~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSD--------DGT--VRIWEIATGRCVRTVQFDS-----EIRSVAWNPLSDL 455 (733)
T ss_pred eEEEEEecCCcceeeecCC--------CCc--EEEEEeecceEEEEEeecc-----eeEEEEecCCCCc
Confidence 4778888999998876553 444 4455677775433322222 2678999998653
No 355
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=31.19 E-value=1.7e+02 Score=30.45 Aligned_cols=93 Identities=17% Similarity=0.077 Sum_probs=47.2
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCC-CCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGY-DQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~-~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
+-|.+++ +||-++---++.+..- +..+....|+||..+| +.|+.+. ..-.+.......+||-|+
T Consensus 94 ~Reii~~--~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpG-----------ltg~S~~--~YVr~lv~~a~~~G~r~V 158 (409)
T KOG1838|consen 94 TREIIKT--SDGGTVTLDWVENPDSRCRTDDGTDPIVVILPG-----------LTGGSHE--SYVRHLVHEAQRKGYRVV 158 (409)
T ss_pred eeEEEEe--CCCCEEEEeeccCcccccCCCCCCCcEEEEecC-----------CCCCChh--HHHHHHHHHHHhCCcEEE
Confidence 4455554 5776665555555432 2112234488888764 2333331 111122345666798776
Q ss_pred eCCCCceec-cCCC------CchhhHHHHhhcHHHHHHHHHHh
Q 007338 560 AGPSIPIIG-EGLW------SNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 560 ~~~~~~~~g-~g~~------~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
--|. +| .|.. +...| ..|+..+|++|.++
T Consensus 159 VfN~---RG~~g~~LtTpr~f~ag~----t~Dl~~~v~~i~~~ 194 (409)
T KOG1838|consen 159 VFNH---RGLGGSKLTTPRLFTAGW----TEDLREVVNHIKKR 194 (409)
T ss_pred EECC---CCCCCCccCCCceeecCC----HHHHHHHHHHHHHh
Confidence 5133 45 2322 33334 66777777777553
No 356
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.03 E-value=1.8e+02 Score=28.73 Aligned_cols=73 Identities=10% Similarity=0.081 Sum_probs=41.5
Q ss_pred ceEEEEEcCCCCCCCceEeeeccccccccCCCC-CCeeeCCCCCEEEEEeeeccCcCcEEEEeecCCCCCCCcceeEeee
Q 007338 323 QTRTWLVCPGSKDVAPRVLFDRVFENVYSDPGS-PMMTRTSTGTNVIAKIKKENDEQIYILLNGRGFTPEGNIPFLDLFD 401 (607)
Q Consensus 323 ~~~l~~~dl~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~dg~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~l~~~d 401 (607)
..|++.+|.+. .+.+.||...+.+...=.|. ..+-+.|-...|++...+ |..+.. ++++|
T Consensus 77 YSHVH~yd~e~--~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~D-Gh~nLG----------------vy~ld 137 (339)
T PF09910_consen 77 YSHVHEYDTEN--DSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARAD-GHANLG----------------VYSLD 137 (339)
T ss_pred cceEEEEEcCC--CeEEEEEecccCCccccccchhheeeCCCcCEEEEEecC-Ccceee----------------eEEEc
Confidence 46999999887 56788875444331100010 114556655666655433 222223 34688
Q ss_pred cCCCCeeEEeecC
Q 007338 402 INTGSKERIWESN 414 (607)
Q Consensus 402 ~~~g~~~~l~~~~ 414 (607)
+++|+.++|....
T Consensus 138 r~~g~~~~L~~~p 150 (339)
T PF09910_consen 138 RRTGKAEKLSSNP 150 (339)
T ss_pred ccCCceeeccCCC
Confidence 8899998886543
No 357
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=30.92 E-value=1.8e+02 Score=30.35 Aligned_cols=17 Identities=24% Similarity=0.040 Sum_probs=10.7
Q ss_pred hHHHhccCeEEEeCCCCce
Q 007338 548 SLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~ 566 (607)
...|+ ++|.|+. ++.+.
T Consensus 125 ~~~L~-~~~~vi~-~D~rG 141 (402)
T PLN02894 125 FDALA-SRFRVIA-IDQLG 141 (402)
T ss_pred HHHHH-hCCEEEE-ECCCC
Confidence 34555 4699998 55533
No 358
>PRK05855 short chain dehydrogenase; Validated
Probab=30.38 E-value=1e+02 Score=33.86 Aligned_cols=78 Identities=21% Similarity=0.178 Sum_probs=41.0
Q ss_pred ECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCcee
Q 007338 488 QRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPII 567 (607)
Q Consensus 488 ~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~ 567 (607)
+..||..|+.+.+-++ +. |.||++|+. +.....+ ......| ++||-|+. ++.|-+
T Consensus 8 ~~~~g~~l~~~~~g~~------~~--~~ivllHG~--------------~~~~~~w-~~~~~~L-~~~~~Vi~-~D~~G~ 62 (582)
T PRK05855 8 VSSDGVRLAVYEWGDP------DR--PTVVLVHGY--------------PDNHEVW-DGVAPLL-ADRFRVVA-YDVRGA 62 (582)
T ss_pred EeeCCEEEEEEEcCCC------CC--CeEEEEcCC--------------CchHHHH-HHHHHHh-hcceEEEE-ecCCCC
Confidence 4569999988765321 12 778887742 1111101 1123455 78999998 665443
Q ss_pred ccCCC--C--chhh-HHHHhhcHHHHHHHH
Q 007338 568 GEGLW--S--NWFQ-VQRLLLKKLFDVEWL 592 (607)
Q Consensus 568 g~g~~--~--~~~~-~~~~~~~~~~~v~~~ 592 (607)
| .. . ...+ ...+.+|+...++.+
T Consensus 63 G--~S~~~~~~~~~~~~~~a~dl~~~i~~l 90 (582)
T PRK05855 63 G--RSSAPKRTAAYTLARLADDFAAVIDAV 90 (582)
T ss_pred C--CCCCCCcccccCHHHHHHHHHHHHHHh
Confidence 3 32 1 1111 245566666666654
No 359
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=30.37 E-value=5.2e+02 Score=25.20 Aligned_cols=55 Identities=11% Similarity=-0.056 Sum_probs=32.5
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCce
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA 74 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~ 74 (607)
|.|...++. +|+..+-..++... ..--..--+.+|.-+.-+ ....+++|.++-+.
T Consensus 68 S~l~~~d~~----tg~~~~~~~l~~~~--FgEGit~~~d~l~qLTWk---------~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 68 SSLRKVDLE----TGKVLQSVPLPPRY--FGEGITILGDKLYQLTWK---------EGTGFVYDPNTLKK 122 (264)
T ss_dssp EEEEEEETT----TSSEEEEEE-TTT----EEEEEEETTEEEEEESS---------SSEEEEEETTTTEE
T ss_pred EEEEEEECC----CCcEEEEEECCccc--cceeEEEECCEEEEEEec---------CCeEEEEccccceE
Confidence 345555665 77776666677643 222333336788888754 35778889987544
No 360
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=30.33 E-value=47 Score=32.33 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=13.6
Q ss_pred HHHhccCeEEEeCCCCceec
Q 007338 549 LIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 549 q~la~~GY~Vl~~~~~~~~g 568 (607)
..|++.||.|+. ++.|..|
T Consensus 54 ~~l~~~~~~vi~-~D~~G~G 72 (282)
T TIGR03343 54 GPFVDAGYRVIL-KDSPGFN 72 (282)
T ss_pred HHHHhCCCEEEE-ECCCCCC
Confidence 467788999998 6664433
No 361
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=29.48 E-value=1.3e+02 Score=18.97 Aligned_cols=32 Identities=9% Similarity=-0.119 Sum_probs=24.6
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCC
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETG 72 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g 72 (607)
....+.|+|++++|+|+-. ....|++.+..+.
T Consensus 10 ~~~~la~d~~~~~lYw~D~---------~~~~I~~~~~~g~ 41 (43)
T smart00135 10 HPNGLAVDWIEGRLYWTDW---------GLDVIEVANLDGT 41 (43)
T ss_pred CcCEEEEeecCCEEEEEeC---------CCCEEEEEeCCCC
Confidence 3567999999999988753 2478888888764
No 362
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=29.27 E-value=2.3e+02 Score=27.83 Aligned_cols=85 Identities=15% Similarity=0.282 Sum_probs=48.1
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCC-----
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESP----- 81 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~----- 81 (607)
+-|-|++ ++.=...|.+... .+-...|||...++.++... ++.-.||=+..++|-.+.|-.+.
T Consensus 170 VrLCDi~---SGs~sH~LsGHr~--~vlaV~Wsp~~e~vLatgsa-------Dg~irlWDiRrasgcf~~lD~hn~k~~p 237 (397)
T KOG4283|consen 170 VRLCDIA---SGSFSHTLSGHRD--GVLAVEWSPSSEWVLATGSA-------DGAIRLWDIRRASGCFRVLDQHNTKRPP 237 (397)
T ss_pred EEEEecc---CCcceeeeccccC--ceEEEEeccCceeEEEecCC-------CceEEEEEeecccceeEEeecccCccCc
Confidence 4455666 2333444443322 48889999999999998764 45556665544545443331111
Q ss_pred ----CccccccccceEEecCCeEEEE
Q 007338 82 ----DICLNAVFGSFVWVNNSTLLIF 103 (607)
Q Consensus 82 ----~~~~~~~~~~~~Wspd~~~l~~ 103 (607)
....+..+.+++|+.|++.+..
T Consensus 238 ~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 238 ILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred cccccccccceeeeeeecccchhhhh
Confidence 1111223457788888775544
No 363
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=28.87 E-value=1.4e+02 Score=30.33 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=11.1
Q ss_pred HHhccCeEEEeCCCCc
Q 007338 550 IFLARRFAVLAGPSIP 565 (607)
Q Consensus 550 ~la~~GY~Vl~~~~~~ 565 (607)
.|.+++|.|+. ++.+
T Consensus 67 ~l~~~~~~vi~-~D~~ 81 (351)
T TIGR01392 67 AIDTDRYFVVC-SNVL 81 (351)
T ss_pred CcCCCceEEEE-ecCC
Confidence 55578999998 5553
No 364
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=28.71 E-value=83 Score=29.22 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=12.1
Q ss_pred hHHHhccCeEEEeCCCCce
Q 007338 548 SLIFLARRFAVLAGPSIPI 566 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~ 566 (607)
...|+ +||.|+. ++.+.
T Consensus 21 ~~~L~-~~~~v~~-~d~~g 37 (251)
T TIGR03695 21 IELLG-PHFRCLA-IDLPG 37 (251)
T ss_pred HHHhc-ccCeEEE-EcCCC
Confidence 35666 8999998 66543
No 365
>KOG3101 consensus Esterase D [General function prediction only]
Probab=28.43 E-value=87 Score=29.20 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=35.0
Q ss_pred ceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEEeCCCCceec
Q 007338 493 VPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 493 ~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl~~~~~~~~g 568 (607)
-.+.=-+|+|+.+..+| |.|+|.|.-+ .. =.+..|.... .+.|.-..+|.+|+. |++--+|
T Consensus 26 c~Mtf~vylPp~a~~~k--~~P~lf~LSG----------LT-CT~~Nfi~Ks-g~qq~As~hgl~vV~-PDTSPRG 86 (283)
T KOG3101|consen 26 CSMTFGVYLPPDAPRGK--RCPVLFYLSG----------LT-CTHENFIEKS-GFQQQASKHGLAVVA-PDTSPRG 86 (283)
T ss_pred cceEEEEecCCCcccCC--cCceEEEecC----------Cc-ccchhhHhhh-hHHHhHhhcCeEEEC-CCCCCCc
Confidence 35666788999988877 4599998521 11 1122343221 122344456999998 5553333
No 366
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=27.90 E-value=1.5e+02 Score=31.40 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=20.9
Q ss_pred eEEEeccCCCCCCCeeeeecCCCCCcccceEEccCCCEEEEEee
Q 007338 7 IGIHRLLPDDSLGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVR 50 (607)
Q Consensus 7 ~~~~~~~~~~~~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~ 50 (607)
|.+.|.. .+...+++. -. .+....||+||+++|+.+.
T Consensus 128 i~~yDw~---~~~~i~~i~---v~-~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 128 ICFYDWE---TGKLIRRID---VS-AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EEEE-TT---T--EEEEES---S--E-EEEEE-TTSSEEEEE-S
T ss_pred EEEEEhh---HcceeeEEe---cC-CCcEEEEECCCCEEEEEeC
Confidence 7777776 132333332 22 3689999999999999863
No 367
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=27.72 E-value=26 Score=19.91 Aligned_cols=9 Identities=44% Similarity=0.988 Sum_probs=6.8
Q ss_pred eEEccCCCE
Q 007338 36 VSWSPDGKR 44 (607)
Q Consensus 36 ~~~SPDG~~ 44 (607)
-.|||||+.
T Consensus 6 t~FSp~Grl 14 (23)
T PF10584_consen 6 TTFSPDGRL 14 (23)
T ss_dssp TSBBTTSSB
T ss_pred eeECCCCeE
Confidence 368999974
No 368
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=27.66 E-value=1.3e+02 Score=28.38 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=9.5
Q ss_pred hhHHHhccCeE---EEe
Q 007338 547 SSLIFLARRFA---VLA 560 (607)
Q Consensus 547 ~~q~la~~GY~---Vl~ 560 (607)
..++|+++||- |+.
T Consensus 21 ~~~~l~~~GY~~~~vya 37 (219)
T PF01674_consen 21 LAPYLKAAGYCDSEVYA 37 (219)
T ss_dssp HHHHHHHTT--CCCEEE
T ss_pred HHHHHHHcCCCcceeEe
Confidence 36799999999 565
No 369
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.57 E-value=2.2e+02 Score=30.73 Aligned_cols=66 Identities=12% Similarity=0.247 Sum_probs=45.8
Q ss_pred eeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEE
Q 007338 23 EVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLI 102 (607)
Q Consensus 23 ~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~ 102 (607)
.++.++-...+..-++||+.++++.-.. + ..|.++|...+..+ .+..+- ....++|.|+|.+++
T Consensus 252 svtsipL~s~v~~ca~sp~E~kLvlGC~--------D--gSiiLyD~~~~~t~-~~ka~~-----~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 252 SVTSIPLPSQVICCARSPSEDKLVLGCE--------D--GSIILYDTTRGVTL-LAKAEF-----IPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEecCCcceEEecCcccceEEEEec--------C--CeEEEEEcCCCeee-eeeecc-----cceEEEEcCCCcEEE
Confidence 3444555557888999999999988774 2 57888898766433 332221 145789999999888
Q ss_pred EE
Q 007338 103 FT 104 (607)
Q Consensus 103 ~~ 104 (607)
+.
T Consensus 316 V~ 317 (545)
T PF11768_consen 316 VG 317 (545)
T ss_pred EE
Confidence 75
No 370
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=26.77 E-value=83 Score=31.25 Aligned_cols=47 Identities=28% Similarity=0.196 Sum_probs=31.2
Q ss_pred hHHHhccCeEEEeCCCCceeccCCC-CchhhHHHHhhcHHHHHHHHHH-hcc
Q 007338 548 SLIFLARRFAVLAGPSIPIIGEGLW-SNWFQVQRLLLKKLFDVEWLIQ-AEL 597 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g~g~~-~~~~~~~~~~~~~~~~v~~~~~-~~~ 597 (607)
.+.|+++||+|+. ++. .|-|.. .........+.|.++|+..+-. .|+
T Consensus 19 l~~~L~~GyaVv~-pDY--~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl 67 (290)
T PF03583_consen 19 LAAWLARGYAVVA-PDY--EGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGL 67 (290)
T ss_pred HHHHHHCCCEEEe-cCC--CCCCCcccCcHhHHHHHHHHHHHHHhcccccCC
Confidence 5788899999998 553 465553 2333334566777777777765 465
No 371
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=26.48 E-value=2.3e+02 Score=29.73 Aligned_cols=177 Identities=8% Similarity=0.077 Sum_probs=0.0
Q ss_pred ceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCC
Q 007338 35 FVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPK 114 (607)
Q Consensus 35 ~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~ 114 (607)
...++.+|++|++. ..+..|-.+|-.+++.. .+..++..+.+..|.-+.+++..+
T Consensus 134 ~~~ytrnGrhlllg----------GrKGHlAa~Dw~t~~L~-----~Ei~v~Etv~Dv~~LHneq~~AVA---------- 188 (545)
T KOG1272|consen 134 HLDYTRNGRHLLLG----------GRKGHLAAFDWVTKKLH-----FEINVMETVRDVTFLHNEQFFAVA---------- 188 (545)
T ss_pred eeeecCCccEEEec----------CCccceeeeecccceee-----eeeehhhhhhhhhhhcchHHHHhh----------
Q ss_pred CccCCCCCeeeecCCccccccccccccccCcccccceeeeccceEEEEeCCC-CeeecCCCCceeeeeeCCCCceEEEEE
Q 007338 115 KTMVPLGPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSLDG-TAKDFGTPAVYTAVEPSPDQKYVLITS 193 (607)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~lt~~~~~~~~~~SpDg~~i~~~~ 193 (607)
....+|++|-.| +...|-....+..+.|-|- .+|+++.
T Consensus 189 ----------------------------------------QK~y~yvYD~~GtElHClk~~~~v~rLeFLPy-HfLL~~~ 227 (545)
T KOG1272|consen 189 ----------------------------------------QKKYVYVYDNNGTELHCLKRHIRVARLEFLPY-HFLLVAA 227 (545)
T ss_pred ----------------------------------------hhceEEEecCCCcEEeehhhcCchhhhcccch-hheeeec
Q ss_pred ccCCCccccCCCcCCccEEEEeCCCC-----------eeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEEEEEe
Q 007338 194 MHRPYSYKVPCARFSQKVQVWTTDGK-----------LVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLYWVEA 262 (607)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~~~d~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~~~~~ 262 (607)
.. ..-|--.|+..| ....+..+|...-+-.+ ..+-.---|||..+.
T Consensus 228 ~~------------~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~G----hsnGtVSlWSP~ske------- 284 (545)
T KOG1272|consen 228 SE------------AGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLG----HSNGTVSLWSPNSKE------- 284 (545)
T ss_pred cc------------CCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEc----CCCceEEecCCCCcc-------
Q ss_pred ecCCCCccccCCCceEEeccCCCCCCCCceeeeecCcccceeeEcCCCcEEEEEEeccccceEEEEE
Q 007338 263 QDRGDANVEVSPRDIIYTQPAEPAEGEKPEILHKLDLRFRSVSWCDDSLALVNETWYKTSQTRTWLV 329 (607)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~ws~Dg~~l~~~~~~~~~~~~l~~~ 329 (607)
....+.-..+.++.+++.++|.+.+.. ..+...+||-+
T Consensus 285 ---------------------------PLvKiLcH~g~V~siAv~~~G~YMaTt--G~Dr~~kIWDl 322 (545)
T KOG1272|consen 285 ---------------------------PLVKILCHRGPVSSIAVDRGGRYMATT--GLDRKVKIWDL 322 (545)
T ss_pred ---------------------------hHHHHHhcCCCcceEEECCCCcEEeec--ccccceeEeee
No 372
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=26.14 E-value=58 Score=32.14 Aligned_cols=38 Identities=29% Similarity=0.440 Sum_probs=27.5
Q ss_pred eEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEecc
Q 007338 482 KEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYP 521 (607)
Q Consensus 482 ~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~ 521 (607)
.+.+.|.+.=..+..-.+|+|++|.+..|| |+++..++
T Consensus 69 ~~~~~~~~~l~~~~~~vv~lppgy~~~~k~--pvl~~~DG 106 (299)
T COG2382 69 VEEILYSSELLSERRRVVYLPPGYNPLEKY--PVLYLQDG 106 (299)
T ss_pred hhhhhhhhhhccceeEEEEeCCCCCccccc--cEEEEecc
Confidence 444555444345778889999999987655 99998764
No 373
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=26.08 E-value=3.2e+02 Score=27.73 Aligned_cols=92 Identities=15% Similarity=0.042 Sum_probs=53.0
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCC--C----CCchhHHHhcc
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSG--M----TPTSSLIFLAR 554 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~--~----~~~~~q~la~~ 554 (607)
..++|..+. |+..|++..++=+.+.+++ =+|+..+ +-..|-. . ..+...+.-+.
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a~~~R----WiL~s~G---------------Ng~~~E~~~~~~~~~~~~~~~ak~~ 170 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEAKPQR----WILVSNG---------------NGECYENRAMLDYKDDWIQRFAKEL 170 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCCCCCc----EEEEEcC---------------ChHHhhhhhhhccccHHHHHHHHHc
Confidence 778888886 9999999999744444332 2333211 1011111 0 01223455556
Q ss_pred CeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh
Q 007338 555 RFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 555 GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
|=.|+. .|.|-+| ..-+.--.++|+.|..+.|++|.++
T Consensus 171 ~aNvl~-fNYpGVg--~S~G~~s~~dLv~~~~a~v~yL~d~ 208 (365)
T PF05677_consen 171 GANVLV-FNYPGVG--SSTGPPSRKDLVKDYQACVRYLRDE 208 (365)
T ss_pred CCcEEE-ECCCccc--cCCCCCCHHHHHHHHHHHHHHHHhc
Confidence 777776 4444444 3311112489999999999999973
No 374
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=25.58 E-value=7.6e+02 Score=25.52 Aligned_cols=60 Identities=27% Similarity=0.431 Sum_probs=43.2
Q ss_pred cccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEe
Q 007338 32 KINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTI 105 (607)
Q Consensus 32 ~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~ 105 (607)
.+.-..|-|--.-+.+++. ..+.+.+|++.+|+...-..+++. +-++.|+-||.++..+.
T Consensus 133 rVg~V~wHPtA~NVLlsag---------~Dn~v~iWnv~tgeali~l~hpd~-----i~S~sfn~dGs~l~Ttc 192 (472)
T KOG0303|consen 133 RVGLVQWHPTAPNVLLSAG---------SDNTVSIWNVGTGEALITLDHPDM-----VYSMSFNRDGSLLCTTC 192 (472)
T ss_pred eEEEEeecccchhhHhhcc---------CCceEEEEeccCCceeeecCCCCe-----EEEEEeccCCceeeeec
Confidence 5777889988887777653 457899999999986422234432 55788998988888763
No 375
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=25.44 E-value=4.4e+02 Score=27.04 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=18.3
Q ss_pred CCeeecC-CCCceeeeeeCCCCceEEEE
Q 007338 166 GTAKDFG-TPAVYTAVEPSPDQKYVLIT 192 (607)
Q Consensus 166 g~~~~lt-~~~~~~~~~~SpDg~~i~~~ 192 (607)
|..+.+. .-..+..+.||||+++|++.
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~Iita 169 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITA 169 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEe
Confidence 4444433 23456789999999888766
No 376
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=25.39 E-value=1.7e+02 Score=29.53 Aligned_cols=60 Identities=10% Similarity=0.059 Sum_probs=36.4
Q ss_pred ceEEEEEECCCCceEEEEEEcCC-CCCCCCCCCCCEEEEeccCCccCcccCCccccCCCcCCCCCCchhHHHhccCeEEE
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPP-GYDQSKDGPLPCLFWAYPEDYKSKDAAGQVRGSPNEFSGMTPTSSLIFLARRFAVL 559 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~-~~~~~k~y~lP~iv~~y~~~~~~~~~~~~~~g~p~~~~~~~~~~~q~la~~GY~Vl 559 (607)
...+.+.++.||-+|+...+--. +..++.+ -+||..- | . -+|...+-+ .-=++.||.|+
T Consensus 213 NG~R~kiks~dgneiDtmF~d~r~n~~~ngq---~LvIC~E-G-------------N-AGFYEvG~m--~tP~~lgYsvL 272 (517)
T KOG1553|consen 213 NGQRLKIKSSDGNEIDTMFLDGRPNQSGNGQ---DLVICFE-G-------------N-AGFYEVGVM--NTPAQLGYSVL 272 (517)
T ss_pred CCeEEEEeecCCcchhheeecCCCCCCCCCc---eEEEEec-C-------------C-ccceEeeee--cChHHhCceee
Confidence 35667889999999999998332 2232221 4555532 1 1 245444433 34567899999
Q ss_pred e
Q 007338 560 A 560 (607)
Q Consensus 560 ~ 560 (607)
-
T Consensus 273 G 273 (517)
T KOG1553|consen 273 G 273 (517)
T ss_pred c
Confidence 6
No 377
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=25.16 E-value=8.8e+02 Score=29.06 Aligned_cols=61 Identities=23% Similarity=0.348 Sum_probs=39.4
Q ss_pred cceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEE
Q 007338 34 NFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 34 ~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
....|--||+++|.+.-... .+...|-++|.+ |...-.. .+... ....+.|-|.|.++...
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~-----~~~RkirV~drE-g~Lns~s-e~~~~---l~~~LsWkPsgs~iA~i 259 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESE-----TGTRKIRVYDRE-GALNSTS-EPVEG---LQHSLSWKPSGSLIAAI 259 (1265)
T ss_pred ceEEEccCCcEEEEEEEecc-----CCceeEEEeccc-chhhccc-Ccccc---cccceeecCCCCeEeee
Confidence 45899999999988765321 445789999988 5543331 11111 13478999987776653
No 378
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=24.82 E-value=5.1e+02 Score=29.31 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=38.9
Q ss_pred eeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecC
Q 007338 22 KEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNN 97 (607)
Q Consensus 22 ~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd 97 (607)
.+|++-+........-|||.| .|||.+. +-+.++|..+-+..+....... .+..+.|+|-
T Consensus 7 ~tlpG~l~~sN~~A~Dw~~~G-LiAygsh-----------slV~VVDs~s~q~iqsie~h~s----~V~~VrWap~ 66 (1062)
T KOG1912|consen 7 HTLPGPLSRSNRNAADWSPSG-LIAYGSH-----------SLVSVVDSRSLQLIQSIELHQS----AVTSVRWAPA 66 (1062)
T ss_pred ccCCCCCCcccccccccCccc-eEEEecC-----------ceEEEEehhhhhhhhccccCcc----ceeEEEeccC
Confidence 455543433356778899988 7899763 6788889877665544433332 2567889875
No 379
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=24.24 E-value=9.1e+02 Score=27.86 Aligned_cols=137 Identities=14% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCCEEEEEeecCcccccCCCceeEEEEECCCCceeecccCCCccccccccceEEecCCeEEEEEecCCCCCCCCCccCCC
Q 007338 41 DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWVNNSTLLIFTIPSSRRDPPKKTMVPL 120 (607)
Q Consensus 41 DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~~~~~~~~~~~~~~~~~ 120 (607)
..+.++++.. .....||.||++.|++..=-..... ..-..+.|+.+..=.
T Consensus 491 ~d~~mil~~~--------~~~~~ly~mDLe~GKVV~eW~~~~~-----~~v~~~~p~~K~aql----------------- 540 (794)
T PF08553_consen 491 QDRNMILLDP--------NNPNKLYKMDLERGKVVEEWKVHDD-----IPVVDIAPDSKFAQL----------------- 540 (794)
T ss_pred cccceEeecC--------CCCCceEEEecCCCcEEEEeecCCC-----cceeEeccccccccc-----------------
Q ss_pred CCeeeecCCccccccccccccccCcccccceeeeccceEEEEeC--CC------CeeecCCCCceeeeeeCCCCceEEEE
Q 007338 121 GPKIQSNEQKNIIISRMTDNLLKDEYDESLFDYYTTAQLVLGSL--DG------TAKDFGTPAVYTAVEPSPDQKYVLIT 192 (607)
Q Consensus 121 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~g------~~~~lt~~~~~~~~~~SpDg~~i~~~ 192 (607)
.++..|.......||++|. .| +.++......++.++-+.+| +|++.
T Consensus 541 -------------------------t~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavg 594 (794)
T PF08553_consen 541 -------------------------TNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVG 594 (794)
T ss_pred -------------------------CCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEE
Q ss_pred EccCCCccccCCCcCCccEEEEeCCCCeeEEeccCCCCCCCCcccccccCCCCcceeecCCCceEE
Q 007338 193 SMHRPYSYKVPCARFSQKVQVWTTDGKLVRELCDLPPAEDIPVCYNSVREGMRSISWRADKPSTLY 258 (607)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~wspdg~~~l~ 258 (607)
+. ..+|.++|.-+...+.+.- +...-...+.-|.||+++|+
T Consensus 595 s~-------------~G~IRLyd~~g~~AKT~lp------------~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 595 SN-------------KGDIRLYDRLGKRAKTALP------------GLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred eC-------------CCcEEeecccchhhhhcCC------------CCCCCeeEEEecCCCcEEEE
No 380
>PLN02965 Probable pheophorbidase
Probab=23.70 E-value=1.3e+02 Score=28.86 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=14.8
Q ss_pred hHHHhccCeEEEeCCCCceec
Q 007338 548 SLIFLARRFAVLAGPSIPIIG 568 (607)
Q Consensus 548 ~q~la~~GY~Vl~~~~~~~~g 568 (607)
...|+++||-|+. ++.|..|
T Consensus 23 ~~~L~~~~~~via-~Dl~G~G 42 (255)
T PLN02965 23 ATLLDAAGFKSTC-VDLTGAG 42 (255)
T ss_pred HHHHhhCCceEEE-ecCCcCC
Confidence 3578889999998 7665544
No 381
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=23.41 E-value=1.9e+02 Score=28.37 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=37.6
Q ss_pred cccceEEcc--CCCEEEEEeecCcccccCCCceeEEEEECCCCce-eecccCCCccccccccceEEecCCeEEEEE
Q 007338 32 KINFVSWSP--DGKRIAFSVRVDEEDNVSSCKLRVWIADAETGEA-KPLFESPDICLNAVFGSFVWVNNSTLLIFT 104 (607)
Q Consensus 32 ~~~~~~~SP--DG~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~-~~lt~~~~~~~~~~~~~~~Wspd~~~l~~~ 104 (607)
..+..+||| ||.+++.+.. ..|+-+|+.+.+. ..+-+... ..+..+.+.|+.+.++.+
T Consensus 172 ~ftsg~WspHHdgnqv~tt~d-----------~tl~~~D~RT~~~~~sI~dAHg----q~vrdlDfNpnkq~~lvt 232 (370)
T KOG1007|consen 172 SFTSGAWSPHHDGNQVATTSD-----------STLQFWDLRTMKKNNSIEDAHG----QRVRDLDFNPNKQHILVT 232 (370)
T ss_pred eecccccCCCCccceEEEeCC-----------CcEEEEEccchhhhcchhhhhc----ceeeeccCCCCceEEEEE
Confidence 367889999 9999887653 5788889987542 22311111 124577788887655554
No 382
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=22.51 E-value=2e+02 Score=28.60 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=30.9
Q ss_pred HHHhccCeEEEeCCCCceeccCCCCchhhHHHHhhcHHHHHHHHHHh--c--ccccccccccC
Q 007338 549 LIFLARRFAVLAGPSIPIIGEGLWSNWFQVQRLLLKKLFDVEWLIQA--E--LLLEDTLMEHS 607 (607)
Q Consensus 549 q~la~~GY~Vl~~~~~~~~g~g~~~~~~~~~~~~~~~~~~v~~~~~~--~--~~~~~~~~~~~ 607 (607)
+.|-..||.|++ +.+.+. ++++ +-....+.++|+...|++|+.. | --..=-||-||
T Consensus 57 ~aL~~~~wsl~q-~~LsSS-y~G~-G~~SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHS 116 (303)
T PF08538_consen 57 EALEETGWSLFQ-VQLSSS-YSGW-GTSSLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHS 116 (303)
T ss_dssp HHHT-TT-EEEE-E--GGG-BTTS--S--HHHHHHHHHHHHHHHHHHS------S-EEEEEEC
T ss_pred HHhccCCeEEEE-EEecCc-cCCc-CcchhhhHHHHHHHHHHHHHHhhccccCCccEEEEecC
Confidence 456567999999 544331 3332 2224478899999999999998 2 11222466665
No 383
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=22.19 E-value=4.2e+02 Score=26.21 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=39.4
Q ss_pred eeeEEEeccCCCCCCCeeeeecCCCC-----CcccceEEccC----CCEEEEEeecCcccccCCCceeEEEEECCCCcee
Q 007338 5 TGIGIHRLLPDDSLGPEKEVHGYPDG-----AKINFVSWSPD----GKRIAFSVRVDEEDNVSSCKLRVWIADAETGEAK 75 (607)
Q Consensus 5 ~~~~~~~~~~~~~~g~~~~lt~~~~~-----~~~~~~~~SPD----G~~laf~~~~~~~~~~~~~~~~L~v~d~~~g~~~ 75 (607)
.-|++-||+ +++..+.-.++.. ....++++-.. ++.+||++.. +...|.++|+++|+.+
T Consensus 34 pKLv~~Dl~----t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~--------~~~glIV~dl~~~~s~ 101 (287)
T PF03022_consen 34 PKLVAFDLK----TNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS--------GGPGLIVYDLATGKSW 101 (287)
T ss_dssp -EEEEEETT----TTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET--------TTCEEEEEETTTTEEE
T ss_pred cEEEEEECC----CCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC--------CcCcEEEEEccCCcEE
Confidence 457778887 5544333335532 24556666552 2378999874 4569999999999998
Q ss_pred ecc
Q 007338 76 PLF 78 (607)
Q Consensus 76 ~lt 78 (607)
++.
T Consensus 102 Rv~ 104 (287)
T PF03022_consen 102 RVL 104 (287)
T ss_dssp EEE
T ss_pred EEe
Confidence 885
No 384
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=21.96 E-value=6.8e+02 Score=25.27 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=17.4
Q ss_pred eeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCC
Q 007338 178 TAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGK 219 (607)
Q Consensus 178 ~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 219 (607)
..++|.|||+ |+++.. ..+|++++.++.
T Consensus 5 ~~~a~~pdG~-l~v~e~-------------~G~i~~~~~~g~ 32 (331)
T PF07995_consen 5 RSMAFLPDGR-LLVAER-------------SGRIWVVDKDGS 32 (331)
T ss_dssp EEEEEETTSC-EEEEET-------------TTEEEEEETTTE
T ss_pred eEEEEeCCCc-EEEEeC-------------CceEEEEeCCCc
Confidence 4688999975 444432 237888884443
No 385
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=21.69 E-value=8.9e+02 Score=24.93 Aligned_cols=36 Identities=8% Similarity=0.322 Sum_probs=21.6
Q ss_pred cCCCCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCe
Q 007338 171 FGTPAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKL 220 (607)
Q Consensus 171 lt~~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~ 220 (607)
|....+++.++.-++ .. +.++.. ..+|++||..+|+
T Consensus 191 lGH~eFVS~isl~~~-~~-LlS~sG------------D~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 191 LGHKEFVSTISLTDN-YL-LLSGSG------------DKTLRLWDITSGK 226 (390)
T ss_pred cccHhheeeeeeccC-ce-eeecCC------------CCcEEEEecccCC
Confidence 334456777777654 33 434322 2379999998773
No 386
>PLN00193 expansin-A; Provisional
Probab=21.54 E-value=2.9e+02 Score=26.81 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=26.6
Q ss_pred ceEEEEEECCCCceEEEEEEcCCCCCCCCCC
Q 007338 481 QKEMIKYQRKDGVPLTATLYLPPGYDQSKDG 511 (607)
Q Consensus 481 ~~e~i~~~s~DG~~i~g~l~~P~~~~~~k~y 511 (607)
++=.|++++.||.++-.+=..|+++++++.|
T Consensus 220 ~plsfRvts~~G~~~~~~~viPa~W~~G~ty 250 (256)
T PLN00193 220 QSLSFKVTTTDGQTRFFLNVVPANWGFGQTF 250 (256)
T ss_pred CCEEEEEEEcCCeEEEECceeCCCCCCCCeE
Confidence 4677888999999988877789999998866
No 387
>PRK03204 haloalkane dehalogenase; Provisional
Probab=21.44 E-value=95 Score=30.58 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=20.2
Q ss_pred hccCeEEEeCCCCceeccCCC--C-chhhHHHHhhcHHHHHHHHHHh
Q 007338 552 LARRFAVLAGPSIPIIGEGLW--S-NWFQVQRLLLKKLFDVEWLIQA 595 (607)
Q Consensus 552 a~~GY~Vl~~~~~~~~g~g~~--~-~~~~~~~~~~~~~~~v~~~~~~ 595 (607)
.+++|.|+. ++.+ |.|.. + ...+ ..++..+.+.+++++
T Consensus 57 l~~~~~vi~-~D~~--G~G~S~~~~~~~~---~~~~~~~~~~~~~~~ 97 (286)
T PRK03204 57 LRDRFRCVA-PDYL--GFGLSERPSGFGY---QIDEHARVIGEFVDH 97 (286)
T ss_pred HhCCcEEEE-ECCC--CCCCCCCCCcccc---CHHHHHHHHHHHHHH
Confidence 345799998 6654 34432 1 1111 234556666666665
No 388
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=21.35 E-value=5.7e+02 Score=27.02 Aligned_cols=44 Identities=5% Similarity=-0.077 Sum_probs=23.6
Q ss_pred CCceeEEEEECCCCceeecccCCCccccccccceEEe--cCCeEEEEE
Q 007338 59 SCKLRVWIADAETGEAKPLFESPDICLNAVFGSFVWV--NNSTLLIFT 104 (607)
Q Consensus 59 ~~~~~L~v~d~~~g~~~~lt~~~~~~~~~~~~~~~Ws--pd~~~l~~~ 104 (607)
.....|.++|....+..|..+..+.. ...-.++|. |+...-|..
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g--~~pLEvRflH~P~~~~gFvg 264 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEG--QMPLEVRFLHDPDANYGFVG 264 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTE--EEEEEEEE-SSTT--EEEEE
T ss_pred cccCeEEEEECCCCcEeeEEecCCCC--CceEEEEecCCCCccceEEE
Confidence 45789999999999988887665321 011245555 555555543
No 389
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=21.05 E-value=7e+02 Score=23.48 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=23.7
Q ss_pred ceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCeeEEe
Q 007338 176 VYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLVREL 224 (607)
Q Consensus 176 ~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l 224 (607)
.+..+.|||..-|++-.+. ...|.+-|+.+.-..+|
T Consensus 275 dir~vrfsp~a~yllt~sy-------------d~~ikltdlqgdla~el 310 (350)
T KOG0641|consen 275 DIRCVRFSPGAHYLLTCSY-------------DMKIKLTDLQGDLAHEL 310 (350)
T ss_pred ceeEEEeCCCceEEEEecc-------------cceEEEeecccchhhcC
Confidence 4567899998777776543 23677778777644443
No 390
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=20.91 E-value=4.2e+02 Score=20.81 Aligned_cols=42 Identities=17% Similarity=0.036 Sum_probs=26.2
Q ss_pred CCCeeeeecCCCCCcccceEEccCCCEEEEEeecCcccccCCCceeEEEEECC
Q 007338 18 LGPEKEVHGYPDGAKINFVSWSPDGKRIAFSVRVDEEDNVSSCKLRVWIADAE 70 (607)
Q Consensus 18 ~g~~~~lt~~~~~~~~~~~~~SPDG~~laf~~~~~~~~~~~~~~~~L~v~d~~ 70 (607)
+++.+.+. ..-...+....|||+++|+.... ....|+++...
T Consensus 43 ~~~~~~va--~g~~~aNGI~~s~~~k~lyVa~~---------~~~~I~vy~~~ 84 (86)
T PF01731_consen 43 GKEVKVVA--SGFSFANGIAISPDKKYLYVASS---------LAHSIHVYKRH 84 (86)
T ss_pred CCEeEEee--ccCCCCceEEEcCCCCEEEEEec---------cCCeEEEEEec
Confidence 34455554 22235678899999998766553 34677777653
No 391
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.38 E-value=3.8e+02 Score=26.57 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=44.5
Q ss_pred eeecCCCCeeEEeecCCcc---cceeeeeeecCCCcccccccCCEEEEEeecccccceEEEEecCCCceeeEecCC
Q 007338 399 LFDINTGSKERIWESNREK---YFETAVALVFGQGEEDINLNQLKILTSKESKTEITQYHILSWPLKKSSQITNFP 471 (607)
Q Consensus 399 ~~d~~~g~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~s~d~~~~v~~~ss~~~p~~l~~~~~~~~~~~~Lt~~~ 471 (607)
.+|.+.++++.||...... ..+-+.. .-++|-.+.+++...+...---+|.++..++++++|.+..
T Consensus 82 ~yd~e~~~VrLLWkesih~~~~WaGEVSd-------IlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~p 150 (339)
T PF09910_consen 82 EYDTENDSVRLLWKESIHDKTKWAGEVSD-------ILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNP 150 (339)
T ss_pred EEEcCCCeEEEEEecccCCccccccchhh-------eeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCC
Confidence 4677788888898775431 1122221 2466766788888776555455888888899999998774
No 392
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=20.31 E-value=1.9e+02 Score=28.43 Aligned_cols=46 Identities=4% Similarity=-0.039 Sum_probs=22.5
Q ss_pred HHhccCeEEEeCCCCceeccCCCCch-hhHHHHhhcHHHHHHHHHHhc
Q 007338 550 IFLARRFAVLAGPSIPIIGEGLWSNW-FQVQRLLLKKLFDVEWLIQAE 596 (607)
Q Consensus 550 ~la~~GY~Vl~~~~~~~~g~g~~~~~-~~~~~~~~~~~~~v~~~~~~~ 596 (607)
++...+|-|+. .+.+..+...+... .-...+-+++...+++|+++.
T Consensus 61 ll~~~~~nVi~-vD~~~~~~~~y~~a~~~~~~v~~~la~~l~~L~~~~ 107 (275)
T cd00707 61 YLSRGDYNVIV-VDWGRGANPNYPQAVNNTRVVGAELAKFLDFLVDNT 107 (275)
T ss_pred HHhcCCCEEEE-EECccccccChHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 44456899987 44322111001100 111233456777888888763
No 393
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=20.27 E-value=1e+03 Score=25.08 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=26.2
Q ss_pred CCceeeeeeCCCCceEEEEEccCCCccccCCCcCCccEEEEeCCCCee
Q 007338 174 PAVYTAVEPSPDQKYVLITSMHRPYSYKVPCARFSQKVQVWTTDGKLV 221 (607)
Q Consensus 174 ~~~~~~~~~SpDg~~i~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 221 (607)
++.+..+.-+|+|.+++..+. ..+||+|.+++|..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i-------------~g~lYlWelssG~L 115 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTI-------------SGNLYLWELSSGIL 115 (476)
T ss_pred ccceeeeecCCCceEEEeecc-------------cCcEEEEEeccccH
Confidence 445667888999988887642 23899999999853
Done!