BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007339
(607 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 121/282 (42%), Gaps = 34/282 (12%)
Query: 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKF-NDVIWVTVSQPLD---LFKLQT-----EIA 58
+ + GM G GK+ + + F V WV+V + L KLQ +
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 59 TALKQSLPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLV 118
+ Q LP N ++ + R+L ML+ + +LILDD+W+++ L+ ++ C+++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLILDDVWDSWVLKAF-------DSQCQIL 261
Query: 119 ITTRLYRVCRSMKCKQVAVEL---LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEEC 175
+TTR V S+ + V + L K++ + V +P E + +++EC
Sbjct: 262 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLP----EQAHSIIKEC 317
Query: 176 GCLPLAIVTVAASMSGEEEIYEWQNALNELRG----RLRSLNDVDTKVFGR-LEFSYHRL 230
PL + + A + W+ L +L+ R+R + D + + S L
Sbjct: 318 KGSPLVVSLIGALLRDFPN--RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
Query: 231 KDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDV 272
+ E ++ + + +D +P L W E +EV+D+
Sbjct: 376 R-EDIKDYYTDLSILQKDVKVPTKVLCILWDME--TEEVEDI 414
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/286 (22%), Positives = 124/286 (43%), Gaps = 34/286 (11%)
Query: 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKF-NDVIWVTVSQPLD---LFKLQT-----EIA 58
+ + GM G GK+ + + F V WV+V + L KLQ +
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 215
Query: 59 TALKQSLPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLV 118
+ Q LP N ++ + R+L ML+ + +LILDD+W+++ L+ ++ C+++
Sbjct: 216 ESFSQRLPLNIEEAKDRLRIL-MLRKHPRSLLILDDVWDSWVLKAF-------DSQCQIL 267
Query: 119 ITTRLYRVCRSMKCKQVAVEL---LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEEC 175
+TTR V S+ + V + L K++ + V +P E + +++EC
Sbjct: 268 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLP----EQAHSIIKEC 323
Query: 176 GCLPLAIVTVAASMSGEEEIYEWQNALNELRG----RLRSLNDVDTKVFGR-LEFSYHRL 230
PL + + A + + W+ L +L+ R+R + D + + S L
Sbjct: 324 KGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 381
Query: 231 KDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKY 276
+ E ++ + + +D +P L W E +EV+D+ ++
Sbjct: 382 R-EDIKDYYTDLSILQKDVKVPTKVLCILWDME--TEEVEDILQEF 424
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 74/322 (22%), Positives = 132/322 (40%), Gaps = 46/322 (14%)
Query: 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFND-VIWVTVSQPLD---LFKLQT-----EIA 58
+ ++GM G GK+ + + F+ V WV++ + L KLQ +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 59 TALKQSLPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLV 118
+ Q LP N ++ + R+L ML+ + +LILDD+W+ + L+ +N C+++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDPWVLKAF-------DNQCQIL 261
Query: 119 ITTRLYRVCRSMKCKQVAVEL---LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEEC 175
+TTR V S+ + V + L +++ + V +P II +EC
Sbjct: 262 LTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII----KEC 317
Query: 176 GCLPLAIVTVAASMSGEEEIYEWQNALNELRG----RLRSLNDVDTKVFGR-LEFSYHRL 230
PL + + A + + W L +L+ R+R + D + + S L
Sbjct: 318 KGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
Query: 231 KDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWC 290
+ E ++ + + +D +P L W E +EV+D IL VN
Sbjct: 376 R-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--TEEVED----------ILQEFVNKS 422
Query: 291 LLESAEDDS--CVKMHDLIRDM 310
LL + C +HDL D
Sbjct: 423 LLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 131/322 (40%), Gaps = 46/322 (14%)
Query: 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFND-VIWVTVSQPLD---LFKLQT-----EIA 58
+ ++GM G GK+ + + F+ V WV++ + L KLQ +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 59 TALKQSLPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLV 118
+ Q LP N ++ + R+L ML+ + +LILDD+W+ + L+ +N C+++
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVL-MLRKHPRSLLILDDVWDPWVLKAF-------DNQCQIL 268
Query: 119 ITTRLYRVCRSMKCKQVAVEL---LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEEC 175
+TT V S+ + V + L +++ + V +P II +EC
Sbjct: 269 LTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII----KEC 324
Query: 176 GCLPLAIVTVAASMSGEEEIYEWQNALNELRG----RLRSLNDVDTKVFGR-LEFSYHRL 230
PL + + A + + W L +L+ R+R + D + + S L
Sbjct: 325 KGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 382
Query: 231 KDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWC 290
+ E ++ + + +D +P L W E +EV+D IL VN
Sbjct: 383 R-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--TEEVED----------ILQEFVNKS 429
Query: 291 LLESAEDDS--CVKMHDLIRDM 310
LL + C +HDL D
Sbjct: 430 LLFCNRNGKSFCYYLHDLQVDF 451
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 25/115 (21%)
Query: 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVPSXXXXXXXX 404
+P F + L VL+L + VLPS++ D L +L+ L + C +L +P
Sbjct: 79 LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-CCNKLTELPRG------- 130
Query: 405 XXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGN 459
+E L +L+HL L QLK P G RL +L L FGN
Sbjct: 131 ---------------IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL-FGN 169
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 23/112 (20%)
Query: 340 ENLERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVPSXX 398
EN + +P+ F + L LNL+H ++ LP + D LTNL L L + +L+ +P
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLP--- 173
Query: 399 XXXXXXXXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNL 450
EG + + L L L L QLK P G+ RL +L
Sbjct: 174 ----------EGVF--------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 24/115 (20%)
Query: 354 MNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVPSXXXXXXXXXXXXEGTW 412
+ L L L+ ++ LP+ + D LTNL+ L+L +L+ +P +G +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLP-------------DGVF 129
Query: 413 IEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGN-EALRETV 466
+ L NL++L L+ QL+ P G+ +L NL +L LS+ ++L E V
Sbjct: 130 --------DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 417 LECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKL 455
+ ++ L NL++L L+ QL+ P G+ +L NL +L L
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 24/116 (20%)
Query: 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVPSXXXXXXXX 404
+P F H+ L L L ++ LPS + D LT L+ L L +L+ +P+
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAG------- 149
Query: 405 XXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNE 460
+ L NL L LS+ QL+ P G RL L + L FGN+
Sbjct: 150 --------------AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGNQ 190
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSI-SDLTNLRSLLLRWCGRLKRVPSXXXXXXXX 404
+ + F + L LNL + ++ L + + DLT L +L L +L +P
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLP--------- 99
Query: 405 XXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLS 456
L + L L LYL QLK P+G+ RL L +L+L+
Sbjct: 100 ------------LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 24/116 (20%)
Query: 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVPSXXXXXXXX 404
+P F H+ L L L ++ LPS + D LT L+ L L +L+ +P+
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN-TNQLQSIPAG------- 149
Query: 405 XXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNE 460
+ L NL L LS+ QL+ P G RL L + L FGN+
Sbjct: 150 --------------AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGNQ 190
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSI-SDLTNLRSLLLRWCGRLKRVPSXXXXXXXX 404
+ + F + L LNL + ++ L + + DLT L +L L +L +P
Sbjct: 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLP--------- 99
Query: 405 XXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLS 456
L + L L LYL QLK P+G+ RL L +L+L+
Sbjct: 100 ------------LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 334 SEQEWEENLERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLK 392
+E + N + +P F + L L+L + +++ LP + D LT+L+ L L + +LK
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL-YNNQLK 170
Query: 393 RVPSXXXXXXXXXXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYK 452
RVP EG + + L L L L + QLK+ P G L L
Sbjct: 171 RVP-------------EGAF--------DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209
Query: 453 LKL 455
L+L
Sbjct: 210 LQL 212
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 356 GLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP 395
GL+ L L+ + LP+SI+ L LR L +R C L +P
Sbjct: 128 GLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP 167
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 357 LKVLNLSHTDIEVLPSSISDLTNLRSLLLR 386
L+ L L T I LP+SI++L NL+SL +R
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIR 214
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 23/103 (22%)
Query: 354 MNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVPSXXXXXXXXXXXXEGTW 412
+ L L L+ ++ LP+ + D LTNL+ L+L +L+ +P +G +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLP-------------DGVF 129
Query: 413 IEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKL 455
+ L NL++LYL QL+ P G+ +L NL +L L
Sbjct: 130 --------DKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL 164
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 340 ENLERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVPSXX 398
EN + +P+ F + L L L H ++ LP + D LTNL L L +L+ +P
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD-NNQLQSLP--- 173
Query: 399 XXXXXXXXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNL 450
EG + + L L L L+ QLK P G+ RL +L
Sbjct: 174 ----------EGVF--------DKLTQLKQLSLNDNQLKSVPDGVFDRLTSL 207
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 23/114 (20%)
Query: 344 RRIPECFFVHMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVPSXXXXXX 402
+ +P F + LK L L ++ LP + D LTNL L L + +L+ +P
Sbjct: 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL-YHNQLQSLPKG----- 151
Query: 403 XXXXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLS 456
+ L NL+ L L + QL+ P G+ +L L +L L+
Sbjct: 152 ----------------VFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLN 189
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 417 LECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKL 455
+ ++ L NL++L L+ QL+ P G+ +L NL +L L
Sbjct: 78 ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 23/118 (19%)
Query: 337 EWEENLERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVP 395
E E N + +P F + L L+LS I+ LP + D LT L L L +L+ +P
Sbjct: 34 ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLP 92
Query: 396 SXXXXXXXXXXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKL 453
+ + L L L L + QLK P GI RL +L K+
Sbjct: 93 NGV---------------------FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
>pdb|3NDY|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDY|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
pdb|3NDZ|A Chain A, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|B Chain B, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|C Chain C, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
pdb|3NDZ|D Chain D, The Structure Of The Catalytic And Carbohydrate Binding
Domain Of Endoglucanase D From Clostridium Cellulovorans
Bound To Cellotriose
Length = 345
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 34/151 (22%)
Query: 379 NLRSLLLRWCGRLKRVPSXXXXXXXXXXXXEGTWIEEVLEC--------MEMLENLSH-- 428
N L + W G + P + TW++ V E M ++ NL H
Sbjct: 57 NTLRLPVTWDGHMGAAPEYTI---------DQTWMKRVEEIANYAFDNDMYVIINLHHEN 107
Query: 429 -----LYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCF 483
Y + Q+K T + ++ N +K +G+ + ET+ E + L + G +
Sbjct: 108 EWLKPFYANEAQVKAQLTKVWTQIANNFK---KYGDHLIFETMNEPRPVGASLQWTGGSY 164
Query: 484 SKLKDFNRY-------VKSTDGRGSKNYCLV 507
+ NRY +++T G + Y +V
Sbjct: 165 ENREVVNRYNLTAVNAIRATGGNNATRYIMV 195
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 148 LFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181
L++ G+ SS L+ LN+ ++ E+V+EC +PL+
Sbjct: 223 LWVSGLDSSYLREQXLNEPLVREIVKECSNIPLS 256
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 148 LFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181
L++ G+ SS L+ LN+ ++ E+V+EC +PL+
Sbjct: 223 LWVSGLDSSYLREQXLNEPLVREIVKECSNIPLS 256
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 423 LENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLS 456
L NL LY +S +L PTG+ +L L +L L+
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 23/108 (21%)
Query: 344 RRIPECFFVHMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVPSXXXXXX 402
+ +P F + L LNLS ++ LP+ + D LT L+ L L +L+ +P
Sbjct: 65 QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN-TNQLQSLP------- 116
Query: 403 XXXXXXEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNL 450
+G + + L L L L QLK P G+ RL +L
Sbjct: 117 ------DGVF--------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,526,895
Number of Sequences: 62578
Number of extensions: 720168
Number of successful extensions: 1967
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1926
Number of HSP's gapped (non-prelim): 51
length of query: 607
length of database: 14,973,337
effective HSP length: 104
effective length of query: 503
effective length of database: 8,465,225
effective search space: 4258008175
effective search space used: 4258008175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)