Query 007339
Match_columns 607
No_of_seqs 298 out of 3964
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 22:14:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.3E-67 9.4E-72 568.1 32.2 583 2-604 176-791 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.9E-54 1.5E-58 491.0 38.0 556 3-602 205-888 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-40 3E-45 328.1 14.8 263 3-268 17-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 3.2E-18 6.9E-23 197.3 12.8 142 342-487 105-249 (968)
5 PLN00113 leucine-rich repeat r 99.7 7.3E-18 1.6E-22 194.3 11.8 251 342-600 152-421 (968)
6 KOG4194 Membrane glycoprotein 99.7 2.2E-18 4.8E-23 170.2 4.5 246 338-600 85-333 (873)
7 KOG4194 Membrane glycoprotein 99.7 5.8E-18 1.3E-22 167.3 1.0 239 340-594 182-427 (873)
8 KOG0444 Cytoskeletal regulator 99.7 2.3E-18 4.9E-23 171.3 -2.2 240 346-600 95-379 (1255)
9 PRK04841 transcriptional regul 99.6 2.9E-14 6.3E-19 163.6 21.8 276 4-318 31-335 (903)
10 KOG0444 Cytoskeletal regulator 99.6 6.9E-17 1.5E-21 160.9 -3.5 137 346-486 47-185 (1255)
11 PLN03210 Resistant to P. syrin 99.6 1.6E-14 3.4E-19 167.1 12.7 226 352-600 631-910 (1153)
12 COG2909 MalT ATP-dependent tra 99.5 1.4E-12 3E-17 136.2 21.1 277 4-318 36-341 (894)
13 KOG0472 Leucine-rich repeat pr 99.5 6E-17 1.3E-21 153.4 -11.2 226 346-594 83-308 (565)
14 KOG0472 Leucine-rich repeat pr 99.5 2.5E-15 5.3E-20 142.6 -1.2 117 338-459 190-308 (565)
15 KOG4237 Extracellular matrix p 99.4 2.1E-14 4.6E-19 136.1 -1.6 236 321-561 50-358 (498)
16 KOG0617 Ras suppressor protein 99.4 1E-14 2.3E-19 122.4 -3.5 147 343-494 45-193 (264)
17 PRK15387 E3 ubiquitin-protein 99.4 2.5E-12 5.3E-17 138.5 11.5 200 356-601 223-439 (788)
18 KOG0617 Ras suppressor protein 99.4 1E-14 2.2E-19 122.4 -5.4 170 353-560 31-201 (264)
19 PRK15370 E3 ubiquitin-protein 99.4 6.7E-13 1.4E-17 143.7 6.6 205 356-594 221-426 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 1.4E-12 3.1E-17 141.2 9.0 206 355-601 199-405 (754)
21 PRK15387 E3 ubiquitin-protein 99.4 3.4E-12 7.4E-17 137.4 11.3 204 354-601 241-463 (788)
22 TIGR03015 pepcterm_ATPase puta 99.3 1.2E-10 2.6E-15 113.6 18.9 181 3-189 41-242 (269)
23 KOG0618 Serine/threonine phosp 99.3 6.8E-14 1.5E-18 146.2 -4.4 209 343-561 253-488 (1081)
24 PF05729 NACHT: NACHT domain 99.3 1.7E-11 3.6E-16 110.1 10.9 143 6-154 1-164 (166)
25 KOG0618 Serine/threonine phosp 99.2 3.1E-13 6.7E-18 141.4 -4.2 223 354-595 240-488 (1081)
26 cd00116 LRR_RI Leucine-rich re 99.2 4.2E-12 9.1E-17 127.4 -0.5 237 351-594 19-289 (319)
27 PRK00411 cdc6 cell division co 99.1 4.6E-09 1E-13 108.4 21.4 272 4-295 54-358 (394)
28 KOG4237 Extracellular matrix p 99.1 2.2E-12 4.7E-17 122.6 -4.7 227 356-594 68-333 (498)
29 KOG4658 Apoptotic ATPase [Sign 99.1 4.8E-11 1E-15 131.5 3.9 113 343-456 559-676 (889)
30 TIGR02928 orc1/cdc6 family rep 99.1 2.8E-08 6.2E-13 101.4 23.2 274 4-295 39-350 (365)
31 PF14580 LRR_9: Leucine-rich r 99.1 1.7E-10 3.6E-15 101.9 5.5 130 351-483 15-149 (175)
32 cd00116 LRR_RI Leucine-rich re 99.1 6.4E-11 1.4E-15 118.8 2.7 136 351-487 77-234 (319)
33 PRK00080 ruvB Holliday junctio 99.0 5.3E-09 1.1E-13 104.5 13.5 252 4-296 50-311 (328)
34 PF01637 Arch_ATPase: Archaeal 99.0 1.8E-09 3.9E-14 102.9 9.6 176 4-184 19-233 (234)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.4E-10 3.1E-15 102.3 1.6 123 362-488 4-127 (175)
36 COG3903 Predicted ATPase [Gene 99.0 3.9E-10 8.5E-15 109.3 4.6 293 4-318 13-317 (414)
37 TIGR00635 ruvB Holliday juncti 99.0 6.5E-09 1.4E-13 103.2 13.1 251 5-296 30-290 (305)
38 KOG2120 SCF ubiquitin ligase, 98.9 5.8E-11 1.3E-15 109.0 -2.7 184 402-595 186-375 (419)
39 KOG1259 Nischarin, modulator o 98.9 1.9E-10 4.1E-15 105.7 -1.0 136 353-492 282-417 (490)
40 KOG3207 Beta-tubulin folding c 98.9 3.4E-10 7.4E-15 109.5 -0.2 186 351-560 142-337 (505)
41 COG2256 MGS1 ATPase related to 98.9 1.3E-07 2.9E-12 91.4 17.2 201 3-231 46-264 (436)
42 KOG3207 Beta-tubulin folding c 98.9 1.1E-09 2.4E-14 106.0 2.8 59 523-590 268-333 (505)
43 PF13401 AAA_22: AAA domain; P 98.8 4.6E-09 1E-13 90.0 6.0 119 3-123 2-125 (131)
44 PRK06893 DNA replication initi 98.8 2.7E-08 5.8E-13 93.7 10.3 152 5-188 39-206 (229)
45 PF13173 AAA_14: AAA domain 98.8 1.4E-08 3E-13 86.3 6.7 118 5-144 2-126 (128)
46 KOG0532 Leucine-rich repeat (L 98.8 2.8E-10 6E-15 113.5 -4.5 191 357-559 77-270 (722)
47 COG4886 Leucine-rich repeat (L 98.8 5.9E-09 1.3E-13 107.7 4.7 174 353-560 114-288 (394)
48 PRK07003 DNA polymerase III su 98.8 4.1E-07 8.9E-12 96.3 18.1 158 5-187 38-223 (830)
49 TIGR03420 DnaA_homol_Hda DnaA 98.7 3.9E-08 8.6E-13 93.0 9.4 153 4-188 37-204 (226)
50 PRK09087 hypothetical protein; 98.7 1.2E-07 2.6E-12 88.7 11.5 142 5-187 44-197 (226)
51 COG4886 Leucine-rich repeat (L 98.7 1.8E-08 3.9E-13 104.1 5.7 199 359-602 97-296 (394)
52 PTZ00112 origin recognition co 98.7 2.1E-06 4.5E-11 91.7 20.6 179 6-187 782-984 (1164)
53 PRK13342 recombination factor 98.7 7.9E-07 1.7E-11 91.7 16.9 156 4-187 35-198 (413)
54 COG1474 CDC6 Cdc6-related prot 98.6 1.5E-05 3.2E-10 79.8 24.7 264 8-295 45-334 (366)
55 PRK04195 replication factor C 98.6 2.6E-06 5.6E-11 89.7 20.2 223 5-268 39-271 (482)
56 PF00308 Bac_DnaA: Bacterial d 98.6 3.4E-07 7.4E-12 85.3 12.1 163 5-188 34-211 (219)
57 PRK14960 DNA polymerase III su 98.6 1.3E-06 2.8E-11 91.6 16.9 166 5-181 37-215 (702)
58 KOG1259 Nischarin, modulator o 98.6 5.1E-09 1.1E-13 96.5 -0.8 35 526-560 374-410 (490)
59 PRK08084 DNA replication initi 98.6 2.6E-07 5.6E-12 87.3 9.9 153 4-188 44-212 (235)
60 PRK14949 DNA polymerase III su 98.6 6.5E-07 1.4E-11 96.7 13.8 159 6-185 39-221 (944)
61 KOG0532 Leucine-rich repeat (L 98.6 8.1E-09 1.8E-13 103.3 -0.5 148 342-496 109-256 (722)
62 PLN03025 replication factor C 98.6 6.8E-07 1.5E-11 88.9 13.0 158 4-181 33-196 (319)
63 PRK06645 DNA polymerase III su 98.6 1E-06 2.2E-11 91.6 14.6 155 6-181 44-225 (507)
64 KOG1909 Ran GTPase-activating 98.6 1.7E-08 3.6E-13 95.4 1.3 238 351-595 26-310 (382)
65 PRK14961 DNA polymerase III su 98.6 1.1E-06 2.3E-11 88.9 14.5 156 5-181 38-216 (363)
66 PRK08727 hypothetical protein; 98.6 5.8E-07 1.3E-11 84.8 11.6 145 6-182 42-201 (233)
67 PRK12323 DNA polymerase III su 98.6 6.4E-07 1.4E-11 93.6 12.8 169 6-181 39-221 (700)
68 PRK14956 DNA polymerase III su 98.6 2.1E-07 4.4E-12 94.7 8.9 164 6-180 41-217 (484)
69 PF13855 LRR_8: Leucine rich r 98.5 3.5E-08 7.7E-13 71.4 2.2 59 401-459 1-60 (61)
70 TIGR00678 holB DNA polymerase 98.5 1.5E-06 3.3E-11 79.4 13.2 148 6-180 15-186 (188)
71 PRK12402 replication factor C 98.5 1.1E-06 2.4E-11 88.8 13.5 176 5-185 36-226 (337)
72 PF14516 AAA_35: AAA-like doma 98.5 1.9E-05 4.2E-10 78.6 22.0 179 3-191 29-245 (331)
73 PRK14963 DNA polymerase III su 98.5 1.7E-06 3.8E-11 90.3 14.7 151 6-182 37-214 (504)
74 PLN03150 hypothetical protein; 98.5 1.8E-07 4E-12 101.3 7.8 102 357-458 420-525 (623)
75 PRK00440 rfc replication facto 98.5 4.1E-06 8.8E-11 83.9 16.7 160 4-183 37-201 (319)
76 PRK14957 DNA polymerase III su 98.5 2.9E-06 6.3E-11 88.8 15.0 160 6-186 39-222 (546)
77 KOG2982 Uncharacterized conser 98.5 8E-08 1.7E-12 88.7 3.0 209 380-599 47-265 (418)
78 cd01128 rho_factor Transcripti 98.5 3E-07 6.4E-12 86.7 6.6 92 5-98 16-115 (249)
79 KOG2028 ATPase related to the 98.5 1.7E-06 3.6E-11 82.4 11.4 155 2-180 159-331 (554)
80 PRK14962 DNA polymerase III su 98.5 1.1E-05 2.3E-10 83.8 18.3 162 6-188 37-222 (472)
81 PRK08903 DnaA regulatory inact 98.4 5.8E-07 1.3E-11 84.9 8.4 150 4-189 41-203 (227)
82 KOG1909 Ran GTPase-activating 98.4 4.7E-08 1E-12 92.3 0.8 184 351-560 88-309 (382)
83 PRK08691 DNA polymerase III su 98.4 1E-05 2.2E-10 85.8 18.1 152 6-182 39-217 (709)
84 COG3899 Predicted ATPase [Gene 98.4 4.6E-06 9.9E-11 93.0 16.4 293 3-318 22-389 (849)
85 PRK14964 DNA polymerase III su 98.4 1.1E-05 2.4E-10 83.2 18.0 155 6-181 36-213 (491)
86 PRK14087 dnaA chromosomal repl 98.4 1.6E-06 3.4E-11 89.7 11.7 167 6-189 142-323 (450)
87 PRK05642 DNA replication initi 98.4 1.1E-06 2.4E-11 82.9 9.7 152 6-189 46-212 (234)
88 PRK05564 DNA polymerase III su 98.4 7.8E-06 1.7E-10 81.2 15.5 154 5-183 26-188 (313)
89 PF05621 TniB: Bacterial TniB 98.4 4.9E-06 1.1E-10 79.0 12.3 174 5-181 61-257 (302)
90 PRK07940 DNA polymerase III su 98.4 8.1E-06 1.8E-10 82.5 14.6 160 5-181 36-209 (394)
91 PLN03150 hypothetical protein; 98.4 7.3E-07 1.6E-11 96.7 7.7 106 379-486 419-527 (623)
92 TIGR02397 dnaX_nterm DNA polym 98.4 9.4E-06 2E-10 82.6 15.3 159 6-186 37-219 (355)
93 PRK14969 DNA polymerase III su 98.4 5.8E-06 1.3E-10 87.3 13.9 159 6-185 39-221 (527)
94 cd00009 AAA The AAA+ (ATPases 98.3 1.4E-06 3E-11 76.2 7.6 106 4-125 18-131 (151)
95 PF13855 LRR_8: Leucine rich r 98.3 3.8E-07 8.3E-12 65.9 3.1 57 356-412 2-60 (61)
96 PRK09112 DNA polymerase III su 98.3 5.9E-06 1.3E-10 82.4 12.5 173 5-185 45-240 (351)
97 KOG0531 Protein phosphatase 1, 98.3 6.7E-08 1.5E-12 100.0 -1.4 108 351-461 91-199 (414)
98 PRK07994 DNA polymerase III su 98.3 4.4E-06 9.5E-11 88.9 12.2 169 6-185 39-221 (647)
99 KOG2120 SCF ubiquitin ligase, 98.3 5.7E-08 1.2E-12 89.6 -1.8 158 350-508 205-372 (419)
100 PRK14959 DNA polymerase III su 98.3 2E-05 4.3E-10 83.2 16.7 174 5-189 38-225 (624)
101 TIGR00362 DnaA chromosomal rep 98.3 6.8E-06 1.5E-10 84.8 13.2 159 6-185 137-310 (405)
102 PRK14951 DNA polymerase III su 98.3 9.4E-06 2E-10 86.2 14.1 170 6-182 39-222 (618)
103 PRK13341 recombination factor 98.3 1.5E-05 3.2E-10 86.8 15.9 151 4-182 51-214 (725)
104 PRK14958 DNA polymerase III su 98.3 1.3E-05 2.7E-10 84.2 14.7 156 6-182 39-217 (509)
105 KOG0989 Replication factor C, 98.3 1.7E-06 3.8E-11 80.7 7.2 167 4-185 56-231 (346)
106 COG3267 ExeA Type II secretory 98.3 2.7E-05 5.8E-10 71.3 14.6 181 3-187 49-247 (269)
107 PRK06620 hypothetical protein; 98.3 3.4E-06 7.3E-11 78.2 9.1 136 6-185 45-189 (214)
108 PRK14955 DNA polymerase III su 98.3 8E-06 1.7E-10 83.7 12.7 175 6-184 39-227 (397)
109 PRK05896 DNA polymerase III su 98.3 9.7E-06 2.1E-10 85.1 12.9 171 5-186 38-222 (605)
110 PF05496 RuvB_N: Holliday junc 98.3 2.1E-05 4.5E-10 71.3 13.1 147 4-183 49-219 (233)
111 PRK05707 DNA polymerase III su 98.2 2.5E-05 5.4E-10 77.2 14.6 163 5-182 22-200 (328)
112 PRK07764 DNA polymerase III su 98.2 1.6E-05 3.4E-10 87.7 14.5 156 6-182 38-218 (824)
113 PRK14088 dnaA chromosomal repl 98.2 1.3E-05 2.9E-10 82.9 13.1 161 6-186 131-306 (440)
114 PRK07471 DNA polymerase III su 98.2 2.4E-05 5.2E-10 78.5 14.5 172 6-185 42-238 (365)
115 PRK00149 dnaA chromosomal repl 98.2 1.2E-05 2.6E-10 84.1 12.7 179 6-205 149-349 (450)
116 PRK09111 DNA polymerase III su 98.2 1.9E-05 4.2E-10 84.1 13.9 174 5-185 46-233 (598)
117 PRK09376 rho transcription ter 98.2 3.4E-06 7.4E-11 83.0 7.6 92 5-98 169-268 (416)
118 PRK14952 DNA polymerase III su 98.2 2.5E-05 5.4E-10 82.7 14.5 171 6-187 36-222 (584)
119 PRK14086 dnaA chromosomal repl 98.2 4.3E-05 9.3E-10 80.3 16.0 161 6-187 315-490 (617)
120 TIGR02881 spore_V_K stage V sp 98.2 4.7E-06 1E-10 80.4 8.4 150 4-175 41-210 (261)
121 PRK14970 DNA polymerase III su 98.2 2.7E-05 5.9E-10 79.4 14.3 155 6-181 40-205 (367)
122 PRK12422 chromosomal replicati 98.2 6.9E-05 1.5E-09 77.4 17.1 151 6-179 142-307 (445)
123 PRK14971 DNA polymerase III su 98.2 2.8E-05 6E-10 83.5 14.6 155 5-181 39-218 (614)
124 PRK08451 DNA polymerase III su 98.2 4.3E-05 9.4E-10 79.7 15.6 159 6-185 37-218 (535)
125 PRK14953 DNA polymerase III su 98.2 3.6E-05 7.7E-10 80.3 14.9 156 5-185 38-220 (486)
126 TIGR00767 rho transcription te 98.2 4E-06 8.7E-11 83.0 7.3 92 5-98 168-267 (415)
127 KOG1859 Leucine-rich repeat pr 98.2 3.7E-08 8E-13 101.3 -7.4 127 355-486 164-291 (1096)
128 PRK07133 DNA polymerase III su 98.2 3.4E-05 7.5E-10 82.7 14.3 156 5-185 40-220 (725)
129 PF12799 LRR_4: Leucine Rich r 98.1 2.4E-06 5.3E-11 56.4 3.5 41 401-441 1-41 (44)
130 KOG4341 F-box protein containi 98.1 8.1E-08 1.8E-12 92.8 -5.7 239 353-601 188-444 (483)
131 KOG1859 Leucine-rich repeat pr 98.1 1.6E-07 3.4E-12 96.8 -3.9 108 380-493 166-273 (1096)
132 KOG0531 Protein phosphatase 1, 98.1 6.4E-07 1.4E-11 92.8 0.3 133 353-490 70-202 (414)
133 PRK14954 DNA polymerase III su 98.1 4.7E-05 1E-09 81.3 13.9 171 6-180 39-223 (620)
134 PRK14950 DNA polymerase III su 98.1 6.6E-05 1.4E-09 80.8 14.9 170 6-185 39-221 (585)
135 PRK06305 DNA polymerase III su 98.1 9.5E-05 2.1E-09 76.7 15.1 157 6-184 40-222 (451)
136 TIGR01242 26Sp45 26S proteasom 98.0 1.9E-05 4.1E-10 80.2 9.3 149 5-179 156-328 (364)
137 TIGR02880 cbbX_cfxQ probable R 98.0 4.6E-05 1E-09 74.1 11.6 132 7-156 60-211 (284)
138 PRK14948 DNA polymerase III su 98.0 7.8E-05 1.7E-09 80.1 14.2 171 6-185 39-222 (620)
139 PRK06647 DNA polymerase III su 98.0 0.00011 2.5E-09 77.9 15.1 167 5-182 38-217 (563)
140 KOG2982 Uncharacterized conser 98.0 4.1E-06 9E-11 77.6 2.9 135 353-488 69-213 (418)
141 PRK15386 type III secretion pr 98.0 2E-05 4.3E-10 78.6 7.9 118 352-487 49-169 (426)
142 smart00382 AAA ATPases associa 98.0 2.4E-05 5.3E-10 67.7 7.6 91 5-100 2-92 (148)
143 KOG4341 F-box protein containi 97.9 9.2E-07 2E-11 85.7 -1.9 237 353-597 162-415 (483)
144 CHL00181 cbbX CbbX; Provisiona 97.9 0.00012 2.7E-09 71.1 12.4 133 6-156 60-212 (287)
145 PHA02544 44 clamp loader, smal 97.9 0.00012 2.5E-09 73.1 12.4 123 5-151 43-171 (316)
146 PF00004 AAA: ATPase family as 97.9 1.3E-05 2.9E-10 68.5 4.7 70 8-99 1-71 (132)
147 PRK05563 DNA polymerase III su 97.9 0.00025 5.3E-09 75.7 15.1 166 5-181 38-216 (559)
148 PRK14965 DNA polymerase III su 97.9 0.00016 3.4E-09 77.6 13.6 169 6-185 39-221 (576)
149 TIGR03689 pup_AAA proteasome A 97.9 0.0001 2.3E-09 76.5 11.7 138 5-156 216-381 (512)
150 COG0593 DnaA ATPase involved i 97.9 8.3E-05 1.8E-09 74.3 10.3 157 5-183 113-284 (408)
151 PRK06871 DNA polymerase III su 97.8 0.00044 9.5E-09 67.9 14.5 160 5-180 24-198 (325)
152 PRK03992 proteasome-activating 97.8 0.0001 2.2E-09 75.2 10.4 149 5-179 165-337 (389)
153 PRK07399 DNA polymerase III su 97.8 0.0003 6.5E-09 69.2 13.1 174 5-184 26-220 (314)
154 PRK08769 DNA polymerase III su 97.8 0.00057 1.2E-08 67.0 13.7 157 5-183 26-206 (319)
155 TIGR00602 rad24 checkpoint pro 97.7 6.7E-05 1.4E-09 80.0 7.7 166 5-179 110-317 (637)
156 PRK07261 topology modulation p 97.7 0.00012 2.7E-09 65.4 8.3 36 7-42 2-37 (171)
157 TIGR02903 spore_lon_C ATP-depe 97.7 0.00075 1.6E-08 72.9 15.7 51 135-188 348-398 (615)
158 PLN00020 ribulose bisphosphate 97.7 0.00051 1.1E-08 67.2 12.7 150 4-180 147-333 (413)
159 COG1222 RPT1 ATP-dependent 26S 97.7 0.00032 6.8E-09 67.4 11.1 159 5-189 185-371 (406)
160 COG1373 Predicted ATPase (AAA+ 97.7 0.00028 6E-09 72.0 11.5 117 7-149 39-163 (398)
161 TIGR02640 gas_vesic_GvpN gas v 97.7 0.00044 9.6E-09 66.6 12.3 42 6-53 22-63 (262)
162 PRK15386 type III secretion pr 97.7 8.9E-05 1.9E-09 74.0 7.2 58 526-596 156-213 (426)
163 KOG1644 U2-associated snRNP A' 97.7 0.00012 2.5E-09 64.5 6.4 114 354-468 41-160 (233)
164 PTZ00454 26S protease regulato 97.6 0.00028 6.1E-09 71.7 10.2 149 5-179 179-351 (398)
165 KOG1644 U2-associated snRNP A' 97.6 9.1E-05 2E-09 65.2 5.6 80 379-459 43-124 (233)
166 PRK07993 DNA polymerase III su 97.6 0.0012 2.5E-08 65.7 14.0 161 5-181 24-200 (334)
167 PTZ00361 26 proteosome regulat 97.6 0.00019 4.2E-09 73.4 8.6 149 5-179 217-389 (438)
168 PRK11331 5-methylcytosine-spec 97.6 0.00018 4E-09 72.7 8.3 89 5-98 194-284 (459)
169 KOG4579 Leucine-rich repeat (L 97.6 4.3E-06 9.4E-11 68.5 -2.6 101 358-459 30-134 (177)
170 KOG0991 Replication factor C, 97.6 0.00031 6.8E-09 63.1 8.6 82 2-99 45-126 (333)
171 CHL00176 ftsH cell division pr 97.6 0.00084 1.8E-08 72.4 13.4 147 6-178 217-387 (638)
172 KOG2543 Origin recognition com 97.6 0.00046 9.9E-09 66.9 9.9 141 7-153 32-193 (438)
173 PRK08116 hypothetical protein; 97.6 0.00023 5.1E-09 68.5 8.1 100 6-122 115-219 (268)
174 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00039 8.4E-09 72.4 10.1 151 5-179 259-429 (489)
175 PRK04132 replication factor C 97.6 0.0011 2.4E-08 73.0 13.8 153 10-182 569-728 (846)
176 PRK08118 topology modulation p 97.5 0.00015 3.2E-09 64.5 5.7 37 6-42 2-38 (167)
177 PF12799 LRR_4: Leucine Rich r 97.5 6.1E-05 1.3E-09 49.8 2.3 34 356-389 2-35 (44)
178 TIGR01241 FtsH_fam ATP-depende 97.5 0.00088 1.9E-08 71.1 12.3 154 6-185 89-267 (495)
179 PRK08058 DNA polymerase III su 97.5 0.0017 3.7E-08 64.8 13.4 140 5-152 28-181 (329)
180 KOG0741 AAA+-type ATPase [Post 97.5 0.0029 6.3E-08 63.9 14.5 127 4-151 537-684 (744)
181 KOG2227 Pre-initiation complex 97.5 0.028 6E-07 56.4 21.0 173 3-179 173-362 (529)
182 COG2255 RuvB Holliday junction 97.5 0.013 2.9E-07 54.8 17.5 145 3-180 50-218 (332)
183 PF13177 DNA_pol3_delta2: DNA 97.5 0.00049 1.1E-08 60.8 8.1 118 5-140 19-161 (162)
184 PF13191 AAA_16: AAA ATPase do 97.5 0.00016 3.4E-09 65.9 5.0 30 3-32 22-51 (185)
185 KOG0735 AAA+-type ATPase [Post 97.4 0.0011 2.4E-08 69.2 11.3 158 6-186 432-617 (952)
186 PRK06964 DNA polymerase III su 97.4 0.003 6.4E-08 62.7 14.1 87 85-182 131-222 (342)
187 KOG0733 Nuclear AAA ATPase (VC 97.4 0.00088 1.9E-08 68.7 10.4 125 8-154 548-693 (802)
188 PRK08181 transposase; Validate 97.4 0.00018 3.8E-09 68.8 5.1 99 5-123 106-208 (269)
189 PF07728 AAA_5: AAA domain (dy 97.4 0.0001 2.2E-09 63.6 3.3 76 8-98 2-77 (139)
190 TIGR02237 recomb_radB DNA repa 97.4 0.00048 1E-08 64.1 7.7 47 5-55 12-58 (209)
191 PRK06090 DNA polymerase III su 97.4 0.0029 6.4E-08 62.0 13.4 160 5-184 25-200 (319)
192 PRK12608 transcription termina 97.4 0.00091 2E-08 66.2 9.8 91 6-98 134-232 (380)
193 PTZ00202 tuzin; Provisional 97.4 0.00083 1.8E-08 67.0 9.4 137 5-153 286-434 (550)
194 TIGR02639 ClpA ATP-dependent C 97.4 0.00068 1.5E-08 75.3 9.8 132 6-153 204-358 (731)
195 PF00448 SRP54: SRP54-type pro 97.4 0.00092 2E-08 61.0 8.8 88 5-95 1-92 (196)
196 KOG3665 ZYG-1-like serine/thre 97.3 0.00015 3.3E-09 78.7 3.8 131 355-487 122-263 (699)
197 PF10443 RNA12: RNA12 protein; 97.3 0.0044 9.5E-08 62.0 13.5 185 3-195 15-288 (431)
198 KOG0736 Peroxisome assembly fa 97.3 0.0018 4E-08 68.3 11.1 69 8-98 708-776 (953)
199 KOG1969 DNA replication checkp 97.3 0.00074 1.6E-08 70.7 7.8 74 5-98 326-399 (877)
200 PF13207 AAA_17: AAA domain; P 97.3 0.0002 4.4E-09 60.0 3.2 24 7-30 1-24 (121)
201 KOG0733 Nuclear AAA ATPase (VC 97.3 0.002 4.3E-08 66.2 10.6 72 5-98 223-294 (802)
202 KOG0743 AAA+-type ATPase [Post 97.3 0.012 2.7E-07 58.8 15.8 163 9-207 239-433 (457)
203 PF04665 Pox_A32: Poxvirus A32 97.2 0.00061 1.3E-08 63.4 6.3 35 7-44 15-49 (241)
204 PRK08699 DNA polymerase III su 97.2 0.0039 8.4E-08 61.7 12.2 141 5-152 21-184 (325)
205 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0016 3.4E-08 73.1 10.5 157 5-179 208-390 (852)
206 PRK06526 transposase; Provisio 97.2 0.00033 7.2E-09 66.6 4.5 74 5-98 98-171 (254)
207 PRK04296 thymidine kinase; Pro 97.2 0.00028 6.1E-09 64.3 3.3 111 6-125 3-117 (190)
208 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0013 2.7E-08 62.6 7.9 92 5-97 19-126 (235)
209 COG2812 DnaX DNA polymerase II 97.2 0.0015 3.3E-08 67.5 8.8 160 9-179 42-214 (515)
210 TIGR01243 CDC48 AAA family ATP 97.1 0.0015 3.3E-08 72.7 9.4 148 6-179 488-657 (733)
211 cd01393 recA_like RecA is a b 97.1 0.0017 3.7E-08 61.3 8.4 49 5-53 19-70 (226)
212 PF01695 IstB_IS21: IstB-like 97.1 0.0002 4.2E-09 64.3 1.7 74 5-98 47-120 (178)
213 COG5238 RNA1 Ran GTPase-activa 97.1 0.00023 5.1E-09 65.5 2.1 235 353-594 28-314 (388)
214 cd01120 RecA-like_NTPases RecA 97.1 0.0018 4E-08 57.4 8.0 40 7-49 1-40 (165)
215 PRK09183 transposase/IS protei 97.1 0.00095 2.1E-08 63.9 6.4 26 5-30 102-127 (259)
216 KOG0744 AAA+-type ATPase [Post 97.1 0.00098 2.1E-08 63.1 5.9 41 5-45 177-220 (423)
217 TIGR02238 recomb_DMC1 meiotic 97.1 0.0017 3.7E-08 63.8 7.9 91 6-97 97-202 (313)
218 COG0466 Lon ATP-dependent Lon 97.1 0.0055 1.2E-07 64.6 11.7 136 4-155 349-510 (782)
219 PRK09361 radB DNA repair and r 97.1 0.0018 3.9E-08 61.1 7.6 44 5-52 23-66 (225)
220 KOG0730 AAA+-type ATPase [Post 97.1 0.0057 1.2E-07 63.8 11.5 150 4-179 467-637 (693)
221 KOG2123 Uncharacterized conser 97.0 2.9E-05 6.2E-10 71.5 -4.7 101 377-480 18-123 (388)
222 COG1223 Predicted ATPase (AAA+ 97.0 0.0036 7.9E-08 57.5 8.5 149 5-179 151-319 (368)
223 COG0470 HolB ATPase involved i 97.0 0.0036 7.8E-08 62.8 9.7 125 6-147 25-175 (325)
224 KOG3665 ZYG-1-like serine/thre 97.0 0.00053 1.1E-08 74.6 3.7 127 352-480 145-281 (699)
225 CHL00095 clpC Clp protease ATP 97.0 0.003 6.5E-08 71.1 9.8 153 6-176 201-378 (821)
226 TIGR02012 tigrfam_recA protein 97.0 0.001 2.2E-08 65.0 5.1 86 5-98 55-145 (321)
227 KOG0735 AAA+-type ATPase [Post 97.0 0.0079 1.7E-07 63.1 11.6 148 8-181 704-872 (952)
228 cd00983 recA RecA is a bacter 97.0 0.0011 2.4E-08 64.8 5.2 86 5-98 55-145 (325)
229 PRK12377 putative replication 97.0 0.0026 5.6E-08 60.1 7.5 74 5-97 101-174 (248)
230 PRK07132 DNA polymerase III su 96.9 0.023 4.9E-07 55.4 14.1 155 5-185 18-185 (299)
231 PRK05541 adenylylsulfate kinas 96.9 0.0014 2.9E-08 59.2 5.2 38 3-43 5-42 (176)
232 PRK14722 flhF flagellar biosyn 96.9 0.0036 7.8E-08 62.6 8.5 90 4-97 136-226 (374)
233 PRK11034 clpA ATP-dependent Cl 96.9 0.0027 5.9E-08 69.8 8.4 134 6-153 208-362 (758)
234 PRK09354 recA recombinase A; P 96.9 0.0024 5.1E-08 63.1 7.0 86 5-98 60-150 (349)
235 KOG0739 AAA+-type ATPase [Post 96.9 0.009 2E-07 56.0 10.1 149 5-179 166-335 (439)
236 PRK06921 hypothetical protein; 96.9 0.0041 8.8E-08 59.8 8.4 39 4-44 116-154 (266)
237 PRK07952 DNA replication prote 96.9 0.0047 1E-07 58.2 8.6 76 5-98 99-174 (244)
238 PF07693 KAP_NTPase: KAP famil 96.9 0.0093 2E-07 59.8 11.4 59 3-61 18-80 (325)
239 PF02562 PhoH: PhoH-like prote 96.9 0.00024 5.3E-09 64.5 -0.1 115 5-126 19-158 (205)
240 COG1618 Predicted nucleotide k 96.9 0.0011 2.5E-08 56.2 3.8 28 5-32 5-32 (179)
241 KOG2739 Leucine-rich acidic nu 96.8 0.00047 1E-08 63.5 1.3 84 397-483 61-152 (260)
242 PLN03187 meiotic recombination 96.8 0.0052 1.1E-07 61.0 8.7 59 5-64 126-187 (344)
243 TIGR02639 ClpA ATP-dependent C 96.8 0.0073 1.6E-07 67.2 10.9 81 6-98 485-565 (731)
244 cd01394 radB RadB. The archaea 96.8 0.0042 9E-08 58.2 7.6 42 5-49 19-60 (218)
245 TIGR00763 lon ATP-dependent pr 96.8 0.016 3.5E-07 65.0 13.3 26 5-30 347-372 (775)
246 TIGR01243 CDC48 AAA family ATP 96.8 0.0052 1.1E-07 68.6 9.5 150 5-180 212-382 (733)
247 PRK11889 flhF flagellar biosyn 96.8 0.0043 9.3E-08 61.7 7.7 91 3-97 239-331 (436)
248 PF13481 AAA_25: AAA domain; P 96.8 0.0058 1.3E-07 56.0 8.3 42 6-47 33-81 (193)
249 PRK10536 hypothetical protein; 96.8 0.0019 4.1E-08 60.5 5.0 119 5-126 74-215 (262)
250 TIGR02902 spore_lonB ATP-depen 96.8 0.0047 1E-07 65.7 8.6 25 5-29 86-110 (531)
251 cd03115 SRP The signal recogni 96.8 0.0047 1E-07 55.5 7.4 37 7-46 2-38 (173)
252 KOG2739 Leucine-rich acidic nu 96.8 0.00079 1.7E-08 62.0 2.3 106 351-457 39-152 (260)
253 PF12775 AAA_7: P-loop contain 96.7 0.0013 2.9E-08 63.3 3.9 80 5-98 33-112 (272)
254 PRK14974 cell division protein 96.7 0.0062 1.3E-07 60.3 8.6 91 4-98 139-234 (336)
255 KOG4579 Leucine-rich repeat (L 96.7 0.00025 5.4E-09 58.4 -1.0 88 353-441 51-140 (177)
256 TIGR00064 ftsY signal recognit 96.7 0.0072 1.6E-07 58.3 8.7 93 3-98 70-166 (272)
257 PF08423 Rad51: Rad51; InterP 96.7 0.0078 1.7E-07 57.5 8.8 91 6-97 39-144 (256)
258 PF03215 Rad17: Rad17 cell cyc 96.7 0.0095 2.1E-07 62.6 10.0 35 5-44 45-79 (519)
259 TIGR03499 FlhF flagellar biosy 96.7 0.0057 1.2E-07 59.5 7.8 88 4-95 193-281 (282)
260 TIGR02236 recomb_radA DNA repa 96.7 0.0086 1.9E-07 59.4 9.3 57 5-62 95-154 (310)
261 COG1428 Deoxynucleoside kinase 96.7 0.0035 7.5E-08 56.2 5.7 50 4-59 3-52 (216)
262 PRK00771 signal recognition pa 96.7 0.0065 1.4E-07 62.4 8.4 60 3-65 93-153 (437)
263 PRK10733 hflB ATP-dependent me 96.7 0.0052 1.1E-07 67.0 8.1 146 7-178 187-356 (644)
264 KOG1514 Origin recognition com 96.7 0.017 3.7E-07 60.8 11.2 147 4-155 421-591 (767)
265 COG1102 Cmk Cytidylate kinase 96.6 0.0025 5.3E-08 54.3 4.2 45 7-65 2-46 (179)
266 PF13238 AAA_18: AAA domain; P 96.6 0.0015 3.2E-08 55.3 3.1 22 8-29 1-22 (129)
267 TIGR01650 PD_CobS cobaltochela 96.6 0.024 5.3E-07 55.3 11.7 39 6-50 65-103 (327)
268 COG5238 RNA1 Ran GTPase-activa 96.6 0.0076 1.6E-07 55.8 7.6 180 304-487 44-255 (388)
269 PLN03186 DNA repair protein RA 96.6 0.0073 1.6E-07 60.0 8.2 58 5-63 123-183 (342)
270 PRK05480 uridine/cytidine kina 96.6 0.002 4.3E-08 60.0 4.0 29 1-29 2-30 (209)
271 PF03308 ArgK: ArgK protein; 96.6 0.0014 3E-08 60.9 2.8 52 3-55 27-78 (266)
272 TIGR03346 chaperone_ClpB ATP-d 96.6 0.012 2.7E-07 66.5 11.0 132 6-153 195-349 (852)
273 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0037 8E-08 70.2 6.8 85 5-98 596-680 (852)
274 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0038 8.1E-08 59.4 5.8 92 5-98 69-175 (274)
275 PRK12726 flagellar biosynthesi 96.6 0.0073 1.6E-07 59.9 7.9 90 4-97 205-296 (407)
276 PF10236 DAP3: Mitochondrial r 96.6 0.05 1.1E-06 53.6 13.9 49 134-182 258-306 (309)
277 CHL00095 clpC Clp protease ATP 96.6 0.0066 1.4E-07 68.4 8.6 84 6-98 540-623 (821)
278 COG1703 ArgK Putative periplas 96.6 0.0018 4E-08 60.9 3.5 53 3-56 49-101 (323)
279 cd01121 Sms Sms (bacterial rad 96.6 0.0082 1.8E-07 60.5 8.4 88 5-98 82-170 (372)
280 PTZ00035 Rad51 protein; Provis 96.6 0.011 2.4E-07 58.9 9.1 58 5-63 118-178 (337)
281 PF00485 PRK: Phosphoribulokin 96.6 0.0021 4.6E-08 58.9 3.8 26 7-32 1-26 (194)
282 cd01124 KaiC KaiC is a circadi 96.6 0.0057 1.2E-07 55.7 6.6 44 7-55 1-44 (187)
283 COG0468 RecA RecA/RadA recombi 96.6 0.011 2.4E-07 56.6 8.6 91 5-98 60-153 (279)
284 PRK06835 DNA replication prote 96.6 0.0011 2.3E-08 65.5 1.9 37 5-44 183-219 (329)
285 COG1875 NYN ribonuclease and A 96.6 0.0032 7E-08 60.8 4.9 40 86-126 351-390 (436)
286 PF05673 DUF815: Protein of un 96.5 0.025 5.4E-07 52.5 10.4 96 5-128 52-155 (249)
287 PRK06217 hypothetical protein; 96.5 0.0044 9.4E-08 56.2 5.6 36 7-42 3-38 (183)
288 PF13306 LRR_5: Leucine rich r 96.5 0.0045 9.8E-08 52.4 5.4 107 346-457 3-112 (129)
289 PRK10787 DNA-binding ATP-depen 96.5 0.016 3.5E-07 64.4 10.9 135 4-154 348-507 (784)
290 COG1484 DnaC DNA replication p 96.5 0.0088 1.9E-07 57.0 7.8 75 5-98 105-179 (254)
291 KOG0727 26S proteasome regulat 96.5 0.0071 1.5E-07 55.2 6.6 73 4-98 188-260 (408)
292 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0084 1.8E-07 67.8 8.8 85 5-98 595-679 (852)
293 KOG0729 26S proteasome regulat 96.5 0.0066 1.4E-07 55.8 6.4 72 5-98 211-282 (435)
294 TIGR02239 recomb_RAD51 DNA rep 96.5 0.011 2.4E-07 58.3 8.5 58 5-63 96-156 (316)
295 cd02019 NK Nucleoside/nucleoti 96.5 0.0022 4.8E-08 47.4 2.8 23 7-29 1-23 (69)
296 PRK04301 radA DNA repair and r 96.5 0.01 2.2E-07 59.0 8.4 57 5-62 102-161 (317)
297 PRK12723 flagellar biosynthesi 96.5 0.0056 1.2E-07 61.8 6.4 92 4-98 173-266 (388)
298 KOG1970 Checkpoint RAD17-RFC c 96.5 0.016 3.5E-07 59.1 9.4 35 4-43 109-143 (634)
299 PRK08939 primosomal protein Dn 96.4 0.011 2.3E-07 58.1 8.0 98 5-122 156-259 (306)
300 COG5635 Predicted NTPase (NACH 96.4 0.012 2.6E-07 66.5 9.5 195 7-207 224-449 (824)
301 PRK08233 hypothetical protein; 96.4 0.0027 5.9E-08 57.5 3.6 26 5-30 3-28 (182)
302 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.013 2.9E-07 55.5 8.4 47 5-56 21-67 (237)
303 PRK10867 signal recognition pa 96.4 0.0093 2E-07 61.1 7.7 41 4-46 99-139 (433)
304 PRK10865 protein disaggregatio 96.4 0.011 2.3E-07 66.8 8.7 132 6-153 200-354 (857)
305 PF14532 Sigma54_activ_2: Sigm 96.4 0.0019 4E-08 55.6 2.1 26 5-30 21-46 (138)
306 PHA02244 ATPase-like protein 96.4 0.016 3.5E-07 57.3 8.8 24 7-30 121-144 (383)
307 PTZ00088 adenylate kinase 1; P 96.4 0.0027 6E-08 59.3 3.3 23 8-30 9-31 (229)
308 COG3640 CooC CO dehydrogenase 96.4 0.0058 1.3E-07 55.5 5.1 41 7-49 2-42 (255)
309 cd03214 ABC_Iron-Siderophores_ 96.4 0.016 3.5E-07 52.4 8.2 119 4-128 24-162 (180)
310 PRK10865 protein disaggregatio 96.3 0.0088 1.9E-07 67.5 7.7 84 6-98 599-682 (857)
311 PRK06762 hypothetical protein; 96.3 0.0032 7E-08 56.1 3.5 25 5-29 2-26 (166)
312 COG0563 Adk Adenylate kinase a 96.3 0.0057 1.2E-07 54.7 4.9 24 7-30 2-25 (178)
313 TIGR03878 thermo_KaiC_2 KaiC d 96.3 0.01 2.2E-07 57.0 7.0 40 5-47 36-75 (259)
314 PF01583 APS_kinase: Adenylyls 96.3 0.0051 1.1E-07 53.3 4.4 36 5-43 2-37 (156)
315 COG2884 FtsE Predicted ATPase 96.3 0.011 2.3E-07 52.0 6.3 52 84-137 153-210 (223)
316 COG0464 SpoVK ATPases of the A 96.3 0.03 6.5E-07 59.6 11.2 149 4-177 275-445 (494)
317 KOG2004 Mitochondrial ATP-depe 96.3 0.0089 1.9E-07 62.9 6.7 80 3-98 436-517 (906)
318 PRK05703 flhF flagellar biosyn 96.3 0.011 2.5E-07 60.8 7.6 87 5-95 221-308 (424)
319 cd03247 ABCC_cytochrome_bd The 96.3 0.011 2.4E-07 53.3 6.8 26 5-30 28-53 (178)
320 PRK12727 flagellar biosynthesi 96.3 0.013 2.8E-07 60.8 7.9 89 4-96 349-438 (559)
321 PF00910 RNA_helicase: RNA hel 96.3 0.0026 5.7E-08 51.8 2.4 23 8-30 1-23 (107)
322 PF13671 AAA_33: AAA domain; P 96.3 0.0036 7.8E-08 54.1 3.4 23 7-29 1-23 (143)
323 PRK08533 flagellar accessory p 96.3 0.017 3.6E-07 54.4 8.1 48 5-57 24-71 (230)
324 PRK06696 uridine kinase; Valid 96.3 0.0038 8.2E-08 58.6 3.7 28 3-30 20-47 (223)
325 PF07726 AAA_3: ATPase family 96.2 0.0026 5.6E-08 52.5 2.1 28 8-38 2-29 (131)
326 PRK06547 hypothetical protein; 96.2 0.0059 1.3E-07 54.4 4.5 28 3-30 13-40 (172)
327 PRK12724 flagellar biosynthesi 96.2 0.013 2.7E-07 59.2 7.2 84 5-94 223-307 (432)
328 COG0003 ArsA Predicted ATPase 96.2 0.0074 1.6E-07 59.1 5.5 49 5-56 2-50 (322)
329 TIGR01360 aden_kin_iso1 adenyl 96.2 0.0041 8.9E-08 56.7 3.4 26 4-29 2-27 (188)
330 TIGR01425 SRP54_euk signal rec 96.2 0.014 3.1E-07 59.4 7.5 40 4-46 99-138 (429)
331 COG0572 Udk Uridine kinase [Nu 96.2 0.0048 1E-07 56.1 3.7 27 4-30 7-33 (218)
332 TIGR02858 spore_III_AA stage I 96.2 0.023 5E-07 54.5 8.5 114 5-126 111-231 (270)
333 PTZ00301 uridine kinase; Provi 96.2 0.004 8.6E-08 57.4 3.2 26 5-30 3-28 (210)
334 KOG2035 Replication factor C, 96.2 0.091 2E-06 49.1 11.7 192 3-209 32-262 (351)
335 PHA00729 NTP-binding motif con 96.2 0.0052 1.1E-07 56.6 3.8 27 3-29 15-41 (226)
336 PRK11823 DNA repair protein Ra 96.2 0.021 4.5E-07 59.4 8.7 88 5-98 80-168 (446)
337 TIGR00235 udk uridine kinase. 96.2 0.0053 1.2E-07 56.9 4.0 28 3-30 4-31 (207)
338 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.0054 1.2E-07 53.3 3.7 116 6-125 3-139 (159)
339 KOG1947 Leucine rich repeat pr 96.1 0.0013 2.7E-08 70.1 -0.5 177 351-539 184-375 (482)
340 cd03223 ABCD_peroxisomal_ALDP 96.1 0.021 4.5E-07 50.8 7.4 27 4-30 26-52 (166)
341 PRK11034 clpA ATP-dependent Cl 96.1 0.012 2.7E-07 64.8 7.1 81 6-98 489-569 (758)
342 PRK04040 adenylate kinase; Pro 96.1 0.005 1.1E-07 55.8 3.4 26 5-30 2-27 (188)
343 KOG3347 Predicted nucleotide k 96.1 0.0044 9.6E-08 51.8 2.7 34 5-46 7-40 (176)
344 PRK03839 putative kinase; Prov 96.1 0.0047 1E-07 55.8 3.2 24 7-30 2-25 (180)
345 TIGR00959 ffh signal recogniti 96.1 0.02 4.3E-07 58.7 8.0 41 4-46 98-138 (428)
346 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.1 0.014 3.1E-07 50.5 6.0 26 5-30 26-51 (144)
347 PF00154 RecA: recA bacterial 96.1 0.0097 2.1E-07 58.1 5.5 95 5-107 53-152 (322)
348 cd02025 PanK Pantothenate kina 96.1 0.022 4.8E-07 53.2 7.7 40 7-47 1-40 (220)
349 PRK15429 formate hydrogenlyase 96.1 0.03 6.5E-07 62.1 10.0 40 5-47 399-438 (686)
350 TIGR01313 therm_gnt_kin carboh 96.1 0.0092 2E-07 53.0 4.9 22 8-29 1-22 (163)
351 PF08433 KTI12: Chromatin asso 96.1 0.0085 1.8E-07 57.5 4.9 26 6-31 2-27 (270)
352 PRK15453 phosphoribulokinase; 96.0 0.031 6.7E-07 53.2 8.4 30 1-30 1-30 (290)
353 PRK06995 flhF flagellar biosyn 96.0 0.026 5.6E-07 58.5 8.6 61 4-65 255-316 (484)
354 KOG0734 AAA+-type ATPase conta 96.0 0.011 2.4E-07 60.0 5.6 70 7-98 339-408 (752)
355 PF02374 ArsA_ATPase: Anion-tr 96.0 0.0084 1.8E-07 58.9 4.8 47 6-55 2-48 (305)
356 PF07724 AAA_2: AAA domain (Cd 96.0 0.005 1.1E-07 54.8 3.0 43 5-49 3-45 (171)
357 PF03205 MobB: Molybdopterin g 96.0 0.0079 1.7E-07 51.5 4.1 39 6-46 1-39 (140)
358 PLN02200 adenylate kinase fami 96.0 0.017 3.6E-07 54.4 6.6 27 4-30 42-68 (234)
359 PRK06067 flagellar accessory p 96.0 0.017 3.6E-07 54.8 6.7 47 5-56 25-71 (234)
360 cd00544 CobU Adenosylcobinamid 96.0 0.049 1.1E-06 48.3 9.1 82 7-96 1-83 (169)
361 PRK06002 fliI flagellum-specif 96.0 0.017 3.7E-07 59.0 7.0 90 5-98 165-266 (450)
362 PRK07667 uridine kinase; Provi 96.0 0.007 1.5E-07 55.3 3.9 28 3-30 15-42 (193)
363 COG4608 AppF ABC-type oligopep 96.0 0.039 8.5E-07 51.8 8.7 127 4-134 38-180 (268)
364 KOG2228 Origin recognition com 96.0 0.057 1.2E-06 51.9 9.8 147 4-153 48-219 (408)
365 COG1066 Sms Predicted ATP-depe 96.0 0.035 7.7E-07 54.9 8.7 86 6-98 94-180 (456)
366 PRK00131 aroK shikimate kinase 96.0 0.0063 1.4E-07 54.7 3.4 27 4-30 3-29 (175)
367 PRK05917 DNA polymerase III su 96.0 0.095 2E-06 50.6 11.5 117 5-140 19-154 (290)
368 cd00227 CPT Chloramphenicol (C 96.0 0.0063 1.4E-07 54.7 3.4 26 5-30 2-27 (175)
369 KOG2123 Uncharacterized conser 96.0 0.00062 1.3E-08 63.0 -3.1 84 399-486 17-100 (388)
370 TIGR01359 UMP_CMP_kin_fam UMP- 95.9 0.0051 1.1E-07 55.8 2.8 24 7-30 1-24 (183)
371 PF00006 ATP-synt_ab: ATP synt 95.9 0.034 7.3E-07 51.4 8.1 88 6-98 16-117 (215)
372 cd01131 PilT Pilus retraction 95.9 0.011 2.4E-07 54.2 5.0 25 6-30 2-26 (198)
373 KOG0728 26S proteasome regulat 95.9 0.065 1.4E-06 49.1 9.6 128 4-153 180-331 (404)
374 PRK01184 hypothetical protein; 95.9 0.021 4.6E-07 51.8 6.8 23 6-29 2-24 (184)
375 PRK00625 shikimate kinase; Pro 95.9 0.0061 1.3E-07 54.3 3.1 24 7-30 2-25 (173)
376 PF13604 AAA_30: AAA domain; P 95.9 0.0072 1.6E-07 55.4 3.7 107 3-126 16-133 (196)
377 COG1936 Predicted nucleotide k 95.9 0.0063 1.4E-07 52.6 2.9 20 7-26 2-21 (180)
378 PRK00889 adenylylsulfate kinas 95.9 0.011 2.3E-07 53.3 4.7 28 3-30 2-29 (175)
379 PF00560 LRR_1: Leucine Rich R 95.9 0.0026 5.6E-08 34.8 0.4 19 403-421 2-20 (22)
380 cd03216 ABC_Carb_Monos_I This 95.9 0.0091 2E-07 52.9 4.2 116 5-129 26-147 (163)
381 PRK14529 adenylate kinase; Pro 95.9 0.023 5E-07 52.7 6.9 23 8-30 3-25 (223)
382 cd01122 GP4d_helicase GP4d_hel 95.9 0.048 1E-06 53.0 9.5 52 5-60 30-81 (271)
383 TIGR00416 sms DNA repair prote 95.9 0.025 5.5E-07 58.8 7.9 88 5-98 94-182 (454)
384 cd02027 APSK Adenosine 5'-phos 95.9 0.023 5.1E-07 49.4 6.5 24 7-30 1-24 (149)
385 PF13245 AAA_19: Part of AAA d 95.9 0.015 3.2E-07 43.8 4.5 42 4-45 9-51 (76)
386 cd03222 ABC_RNaseL_inhibitor T 95.9 0.031 6.6E-07 50.1 7.3 27 4-30 24-50 (177)
387 PF03266 NTPase_1: NTPase; In 95.8 0.0051 1.1E-07 54.5 2.3 24 8-31 2-25 (168)
388 COG0542 clpA ATP-binding subun 95.8 0.024 5.1E-07 61.6 7.6 86 4-98 520-605 (786)
389 PF13306 LRR_5: Leucine rich r 95.8 0.015 3.3E-07 49.1 5.1 102 345-451 25-129 (129)
390 PRK05800 cobU adenosylcobinami 95.8 0.053 1.1E-06 48.2 8.6 83 7-97 3-87 (170)
391 PRK04328 hypothetical protein; 95.8 0.023 4.9E-07 54.3 6.7 40 5-47 23-62 (249)
392 PRK09435 membrane ATPase/prote 95.8 0.035 7.6E-07 54.8 8.2 50 3-53 54-103 (332)
393 cd02024 NRK1 Nicotinamide ribo 95.8 0.0065 1.4E-07 54.7 2.8 23 7-29 1-23 (187)
394 cd03228 ABCC_MRP_Like The MRP 95.8 0.031 6.8E-07 50.0 7.2 26 5-30 28-53 (171)
395 TIGR02974 phageshock_pspF psp 95.8 0.026 5.6E-07 56.2 7.3 39 6-47 23-61 (329)
396 cd01135 V_A-ATPase_B V/A-type 95.8 0.066 1.4E-06 51.0 9.6 94 5-98 69-178 (276)
397 TIGR01287 nifH nitrogenase iro 95.8 0.0092 2E-07 58.2 4.0 41 6-49 1-41 (275)
398 CHL00206 ycf2 Ycf2; Provisiona 95.8 0.047 1E-06 64.4 9.9 27 5-31 1630-1656(2281)
399 PRK00300 gmk guanylate kinase; 95.8 0.0093 2E-07 55.2 3.8 29 2-30 2-30 (205)
400 PRK13236 nitrogenase reductase 95.8 0.014 3E-07 57.4 5.1 41 2-45 3-43 (296)
401 cd03230 ABC_DR_subfamily_A Thi 95.7 0.038 8.3E-07 49.5 7.6 26 5-30 26-51 (173)
402 PRK05022 anaerobic nitric oxid 95.7 0.046 1E-06 58.2 9.4 40 6-48 211-250 (509)
403 PRK10416 signal recognition pa 95.7 0.032 7E-07 55.0 7.5 40 4-46 113-152 (318)
404 PRK14721 flhF flagellar biosyn 95.7 0.058 1.3E-06 55.0 9.4 61 4-65 190-251 (420)
405 TIGR02322 phosphon_PhnN phosph 95.7 0.0089 1.9E-07 54.0 3.3 25 6-30 2-26 (179)
406 cd02021 GntK Gluconate kinase 95.7 0.0076 1.7E-07 52.6 2.8 23 7-29 1-23 (150)
407 PRK11608 pspF phage shock prot 95.7 0.026 5.6E-07 56.3 6.8 39 6-47 30-68 (326)
408 cd02020 CMPK Cytidine monophos 95.7 0.0077 1.7E-07 52.3 2.7 24 7-30 1-24 (147)
409 cd02023 UMPK Uridine monophosp 95.7 0.0075 1.6E-07 55.5 2.8 23 7-29 1-23 (198)
410 KOG0731 AAA+-type ATPase conta 95.7 0.092 2E-06 56.8 11.1 149 8-181 347-520 (774)
411 cd02028 UMPK_like Uridine mono 95.7 0.01 2.2E-07 53.5 3.5 24 7-30 1-24 (179)
412 cd01125 repA Hexameric Replica 95.6 0.052 1.1E-06 51.6 8.5 55 7-61 3-67 (239)
413 TIGR02655 circ_KaiC circadian 95.6 0.026 5.6E-07 59.6 6.9 88 5-98 263-365 (484)
414 PRK09519 recA DNA recombinatio 95.6 0.028 6E-07 61.5 7.1 86 5-98 60-150 (790)
415 smart00763 AAA_PrkA PrkA AAA d 95.6 0.011 2.3E-07 58.5 3.7 29 3-31 76-104 (361)
416 TIGR01069 mutS2 MutS2 family p 95.6 0.048 1E-06 60.6 9.1 27 2-28 319-345 (771)
417 KOG0651 26S proteasome regulat 95.6 0.012 2.6E-07 55.7 3.7 26 5-30 166-191 (388)
418 PF03969 AFG1_ATPase: AFG1-lik 95.6 0.018 3.8E-07 57.8 5.1 102 5-128 62-171 (362)
419 PRK14737 gmk guanylate kinase; 95.6 0.013 2.8E-07 53.0 3.8 27 3-29 2-28 (186)
420 TIGR00708 cobA cob(I)alamin ad 95.6 0.031 6.8E-07 49.2 6.0 118 4-125 4-141 (173)
421 PRK08972 fliI flagellum-specif 95.6 0.051 1.1E-06 55.3 8.4 89 5-98 162-264 (444)
422 PRK10463 hydrogenase nickel in 95.6 0.09 1.9E-06 50.6 9.6 29 2-30 101-129 (290)
423 PRK12339 2-phosphoglycerate ki 95.5 0.013 2.7E-07 53.6 3.6 25 5-29 3-27 (197)
424 COG3910 Predicted ATPase [Gene 95.5 0.093 2E-06 46.2 8.6 27 3-29 35-61 (233)
425 COG0055 AtpD F0F1-type ATP syn 95.5 0.029 6.2E-07 54.6 6.1 144 6-152 148-321 (468)
426 PF00625 Guanylate_kin: Guanyl 95.5 0.016 3.5E-07 52.5 4.4 36 5-43 2-37 (183)
427 PF13504 LRR_7: Leucine rich r 95.5 0.0052 1.1E-07 31.1 0.6 17 583-600 1-17 (17)
428 KOG1947 Leucine rich repeat pr 95.5 0.0026 5.7E-08 67.7 -1.1 172 375-560 185-373 (482)
429 PRK14723 flhF flagellar biosyn 95.5 0.059 1.3E-06 58.8 9.1 88 5-96 185-273 (767)
430 cd02040 NifH NifH gene encodes 95.5 0.019 4E-07 55.9 5.0 42 6-50 2-43 (270)
431 TIGR01817 nifA Nif-specific re 95.5 0.035 7.6E-07 59.7 7.4 39 6-47 220-258 (534)
432 cd00984 DnaB_C DnaB helicase C 95.5 0.066 1.4E-06 51.0 8.6 50 5-58 13-62 (242)
433 PRK12678 transcription termina 95.5 0.017 3.6E-07 60.1 4.6 91 6-98 417-515 (672)
434 PRK14530 adenylate kinase; Pro 95.5 0.011 2.4E-07 55.1 3.2 25 6-30 4-28 (215)
435 PRK13949 shikimate kinase; Pro 95.4 0.013 2.9E-07 52.1 3.3 25 6-30 2-26 (169)
436 COG0529 CysC Adenylylsulfate k 95.4 0.015 3.3E-07 50.4 3.5 30 3-32 21-50 (197)
437 PRK13947 shikimate kinase; Pro 95.4 0.012 2.5E-07 52.8 3.0 24 7-30 3-26 (171)
438 TIGR00150 HI0065_YjeE ATPase, 95.4 0.016 3.4E-07 48.8 3.5 28 4-31 21-48 (133)
439 TIGR03263 guanyl_kin guanylate 95.4 0.012 2.6E-07 53.2 3.1 24 6-29 2-25 (180)
440 PF06745 KaiC: KaiC; InterPro 95.4 0.022 4.8E-07 53.6 5.0 40 6-47 20-59 (226)
441 COG0194 Gmk Guanylate kinase [ 95.4 0.016 3.4E-07 51.0 3.6 26 4-29 3-28 (191)
442 PRK10751 molybdopterin-guanine 95.4 0.016 3.6E-07 51.2 3.7 28 4-31 5-32 (173)
443 PRK14527 adenylate kinase; Pro 95.4 0.015 3.3E-07 53.1 3.7 28 3-30 4-31 (191)
444 COG0467 RAD55 RecA-superfamily 95.4 0.039 8.4E-07 53.2 6.6 49 4-57 22-70 (260)
445 PRK06731 flhF flagellar biosyn 95.4 0.063 1.4E-06 51.5 7.9 90 4-98 74-166 (270)
446 cd00071 GMPK Guanosine monopho 95.4 0.012 2.7E-07 50.3 2.8 24 7-30 1-24 (137)
447 PRK13948 shikimate kinase; Pro 95.4 0.017 3.6E-07 52.0 3.7 29 2-30 7-35 (182)
448 PRK05342 clpX ATP-dependent pr 95.4 0.024 5.2E-07 58.0 5.3 25 6-30 109-133 (412)
449 COG1419 FlhF Flagellar GTP-bin 95.3 0.061 1.3E-06 53.6 7.8 67 4-71 202-269 (407)
450 cd01134 V_A-ATPase_A V/A-type 95.3 0.12 2.6E-06 50.8 9.6 47 6-57 158-205 (369)
451 cd03281 ABC_MSH5_euk MutS5 hom 95.3 0.011 2.5E-07 54.8 2.6 23 5-27 29-51 (213)
452 PRK09270 nucleoside triphospha 95.3 0.017 3.6E-07 54.5 3.8 29 3-31 31-59 (229)
453 cd00046 DEXDc DEAD-like helica 95.3 0.046 9.9E-07 46.6 6.4 37 7-44 2-38 (144)
454 PRK13975 thymidylate kinase; P 95.3 0.015 3.3E-07 53.4 3.5 25 6-30 3-27 (196)
455 cd02117 NifH_like This family 95.3 0.013 2.9E-07 54.5 3.1 39 6-47 1-39 (212)
456 PRK14532 adenylate kinase; Pro 95.3 0.016 3.5E-07 52.8 3.5 23 8-30 3-25 (188)
457 PRK12597 F0F1 ATP synthase sub 95.3 0.069 1.5E-06 55.1 8.4 92 5-98 143-249 (461)
458 COG1124 DppF ABC-type dipeptid 95.3 0.023 5.1E-07 52.1 4.4 26 5-30 33-58 (252)
459 PRK13768 GTPase; Provisional 95.3 0.025 5.5E-07 54.1 4.9 37 6-45 3-39 (253)
460 KOG0736 Peroxisome assembly fa 95.3 0.13 2.7E-06 55.1 10.1 147 4-181 430-600 (953)
461 COG4088 Predicted nucleotide k 95.2 0.012 2.6E-07 52.3 2.3 27 6-32 2-28 (261)
462 cd00820 PEPCK_HprK Phosphoenol 95.2 0.02 4.4E-07 45.9 3.4 22 5-26 15-36 (107)
463 PRK05973 replicative DNA helic 95.2 0.053 1.1E-06 50.8 6.6 47 5-56 64-110 (237)
464 PRK05818 DNA polymerase III su 95.2 2.2 4.7E-05 40.5 17.2 28 2-29 4-31 (261)
465 PRK05922 type III secretion sy 95.2 0.11 2.4E-06 53.1 9.4 89 5-98 157-259 (434)
466 PRK08149 ATP synthase SpaL; Va 95.2 0.056 1.2E-06 55.2 7.2 89 5-98 151-253 (428)
467 TIGR00073 hypB hydrogenase acc 95.2 0.019 4.1E-07 53.2 3.7 29 2-30 19-47 (207)
468 PRK08927 fliI flagellum-specif 95.2 0.087 1.9E-06 53.9 8.6 89 5-98 158-260 (442)
469 PRK14738 gmk guanylate kinase; 95.2 0.019 4.1E-07 53.1 3.6 26 3-28 11-36 (206)
470 KOG3928 Mitochondrial ribosome 95.2 0.28 6.1E-06 48.7 11.5 55 135-189 406-460 (461)
471 cd00464 SK Shikimate kinase (S 95.1 0.016 3.5E-07 50.7 3.0 23 8-30 2-24 (154)
472 PRK13946 shikimate kinase; Pro 95.1 0.018 3.9E-07 52.2 3.3 26 5-30 10-35 (184)
473 TIGR03305 alt_F1F0_F1_bet alte 95.1 0.041 8.8E-07 56.4 6.1 92 5-98 138-244 (449)
474 PRK06793 fliI flagellum-specif 95.1 0.049 1.1E-06 55.6 6.7 90 5-98 156-258 (432)
475 COG4240 Predicted kinase [Gene 95.1 0.064 1.4E-06 48.5 6.5 81 4-86 49-133 (300)
476 KOG3354 Gluconate kinase [Carb 95.1 0.046 1E-06 46.2 5.3 25 6-30 13-37 (191)
477 COG3854 SpoIIIAA ncharacterize 95.1 0.037 8.1E-07 50.2 5.0 103 8-122 140-251 (308)
478 KOG1532 GTPase XAB1, interacts 95.1 0.022 4.8E-07 52.8 3.7 60 4-64 18-86 (366)
479 cd01136 ATPase_flagellum-secre 95.1 0.13 2.7E-06 50.7 9.2 89 5-98 69-171 (326)
480 TIGR03498 FliI_clade3 flagella 95.1 0.072 1.6E-06 54.4 7.8 90 5-98 140-242 (418)
481 PRK10875 recD exonuclease V su 95.1 0.05 1.1E-06 58.6 6.9 121 5-128 167-306 (615)
482 TIGR00554 panK_bact pantothena 95.1 0.021 4.7E-07 55.2 3.8 28 3-30 60-87 (290)
483 PRK06761 hypothetical protein; 95.1 0.027 5.9E-07 54.1 4.5 26 5-30 3-28 (282)
484 TIGR00382 clpX endopeptidase C 95.1 0.033 7.1E-07 56.7 5.3 25 6-30 117-141 (413)
485 PRK05439 pantothenate kinase; 95.0 0.022 4.9E-07 55.5 3.8 28 3-30 84-111 (311)
486 PRK03846 adenylylsulfate kinas 95.0 0.024 5.1E-07 52.1 3.8 28 3-30 22-49 (198)
487 PRK09099 type III secretion sy 95.0 0.059 1.3E-06 55.3 7.0 91 4-98 162-265 (441)
488 PRK05057 aroK shikimate kinase 95.0 0.022 4.8E-07 50.9 3.5 26 5-30 4-29 (172)
489 KOG0738 AAA+-type ATPase [Post 95.0 0.03 6.6E-07 54.7 4.5 25 6-30 246-270 (491)
490 PRK13230 nitrogenase reductase 95.0 0.027 5.7E-07 55.0 4.3 40 6-48 2-41 (279)
491 PF08477 Miro: Miro-like prote 95.0 0.021 4.5E-07 47.4 3.1 23 8-30 2-24 (119)
492 PLN02348 phosphoribulokinase 95.0 0.023 5.1E-07 56.7 3.8 28 3-30 47-74 (395)
493 PRK10820 DNA-binding transcrip 94.9 0.088 1.9E-06 56.1 8.4 40 6-48 228-267 (520)
494 TIGR00390 hslU ATP-dependent p 94.9 0.041 8.8E-07 55.4 5.4 57 5-61 47-104 (441)
495 cd01428 ADK Adenylate kinase ( 94.9 0.02 4.3E-07 52.5 3.1 23 8-30 2-24 (194)
496 PRK07276 DNA polymerase III su 94.9 0.45 9.8E-06 46.1 12.4 65 85-150 103-172 (290)
497 cd01132 F1_ATPase_alpha F1 ATP 94.9 0.052 1.1E-06 51.6 5.8 89 5-98 69-173 (274)
498 PRK14531 adenylate kinase; Pro 94.9 0.022 4.8E-07 51.6 3.3 25 6-30 3-27 (183)
499 PRK13232 nifH nitrogenase redu 94.9 0.031 6.7E-07 54.4 4.5 38 6-46 2-39 (273)
500 TIGR02173 cyt_kin_arch cytidyl 94.9 0.023 4.9E-07 50.8 3.3 24 7-30 2-25 (171)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-67 Score=568.09 Aligned_cols=583 Identities=31% Similarity=0.483 Sum_probs=465.4
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCccc--ccchHHHH
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDK--VRRPGRLL 79 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~--~~~~~~l~ 79 (607)
+++..+++|+||||+||||||++++++.....++|+.++||.|++.++...++.+|+..++.......+. ......+.
T Consensus 176 ~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~ 255 (889)
T KOG4658|consen 176 EDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLL 255 (889)
T ss_pred cCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHH
Confidence 5666899999999999999999999999845699999999999999999999999999998855544433 23344444
Q ss_pred HHHhcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhh-cccce-eecccCCHHHHHHHhHhhhCCCC
Q 007339 80 GMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRS-MKCKQ-VAVELLSKQEAFNLFIDGVGSSI 157 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~-~~~~~-~~l~~L~~~ea~~L~~~~~~~~~ 157 (607)
+. +.++|++||+||||+..+|+.+..++|...+|++|++|||+..++.. ++... ++++.|+.+|||+||.+.++...
T Consensus 256 ~~-L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~ 334 (889)
T KOG4658|consen 256 NL-LEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNT 334 (889)
T ss_pred HH-hccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccc
Confidence 44 48999999999999999999999999988889999999999999998 66544 99999999999999999998874
Q ss_pred CCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhc-cccCCCCchhhhhhHHhhhcCCChhhHH
Q 007339 158 LQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGR-LRSLNDVDTKVFGRLEFSYHRLKDEKLQ 236 (607)
Q Consensus 158 ~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~s~~~L~~~~~~ 236 (607)
....+..++.+++++++|+|+|||+.++|+.|+.+....+|+++...+... ....+...+.++.++.+||+.|+ ++.|
T Consensus 335 ~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~-~~lK 413 (889)
T KOG4658|consen 335 LGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP-EELK 413 (889)
T ss_pred ccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh-HHHH
Confidence 443344899999999999999999999999999998999999999999877 44455667899999999999999 9999
Q ss_pred HHHHHhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHHHHHHcccccccCC---CCeEEecHHHHHHHHH
Q 007339 237 QCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLESAED---DSCVKMHDLIRDMALR 313 (607)
Q Consensus 237 ~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~---~~~~~~H~lv~~~~~~ 313 (607)
.||+|||.||+++.|++..++.+|+++|++.....+...+++++.++++|++++|+....+ ...|.|||+||++|.+
T Consensus 414 ~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ 493 (889)
T KOG4658|consen 414 SCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALW 493 (889)
T ss_pred HHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHH
Confidence 9999999999999999999999999999999877788999999999999999999998753 3889999999999999
Q ss_pred Hhc-----CCCcEEEEcCcccccCCChhhhhhhcccc--------cchhhhcCCCCceEEEccCCC--CccCCc-cccCC
Q 007339 314 ITS-----KSPLFMVKAGLRLLKFPSEQEWEENLERR--------IPECFFVHMNGLKVLNLSHTD--IEVLPS-SISDL 377 (607)
Q Consensus 314 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~L~~L~l~~~~--~~~l~~-~~~~l 377 (607)
+++ .+. .++.++..+.+.+....|....... ++.. ..++.|++|-+..|. +..++. .|..+
T Consensus 494 ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m 570 (889)
T KOG4658|consen 494 IASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSL 570 (889)
T ss_pred Hhccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhC
Confidence 999 555 5666666777777777775332222 3332 246689999998886 566654 37789
Q ss_pred ccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcc
Q 007339 378 TNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLS 456 (607)
Q Consensus 378 ~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 456 (607)
+.|++|||++|.....+| .++.+-+|++|+++++.+..+|.+++++.+|.+|++..+.-...+++++..|.+|++|.+.
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 999999999998888999 8999999999999999999999999999999999999887555557777789999999998
Q ss_pred cCc-chhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchhhhhhcccccccccccceeeeee
Q 007339 457 FGN-EALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFA 535 (607)
Q Consensus 457 ~~~-~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 535 (607)
... ......+..+..+. +|+.+................ .+|..+.................+..+++|+.|.+.+
T Consensus 651 ~s~~~~~~~~l~el~~Le-~L~~ls~~~~s~~~~e~l~~~---~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~ 726 (889)
T KOG4658|consen 651 RSALSNDKLLLKELENLE-HLENLSITISSVLLLEDLLGM---TRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILD 726 (889)
T ss_pred ccccccchhhHHhhhccc-chhhheeecchhHhHhhhhhh---HHHHHHhHhhhhcccccceeecccccccCcceEEEEc
Confidence 754 33344456777788 888887755444111222111 1122111111100022233445567789999999999
Q ss_pred eccCCCCC-c-----ccC-CcccceeeeeeecCcccccCccccccccccccccccccceEEEecccchhhhhhccc
Q 007339 536 CKICEREE-P-----IVL-PEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLKNLFSLRK 604 (607)
Q Consensus 536 ~~~~~~~~-~-----~~~-~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~~~ 604 (607)
|.+..... + ... ++++..+.+.+|+...+ +.|. .+.|+|+.|.+..|+.++++++-.+
T Consensus 727 ~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~---l~~~--------~f~~~L~~l~l~~~~~~e~~i~~~k 791 (889)
T KOG4658|consen 727 CGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRD---LTWL--------LFAPHLTSLSLVSCRLLEDIIPKLK 791 (889)
T ss_pred CCCchhhcccccccchhhhHHHHHHHHhhccccccc---cchh--------hccCcccEEEEecccccccCCCHHH
Confidence 98753211 1 122 56777778888875543 4343 5689999999999999998876443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.9e-54 Score=490.97 Aligned_cols=556 Identities=22% Similarity=0.308 Sum_probs=389.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEe---CCCC-----------C-HHHHHHHHHHHHccCCCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTV---SQPL-----------D-LFKLQTEIATALKQSLPE 67 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~ 67 (607)
+++++|+||||||+||||||+++|++.. ..|++.+|++. .... . ...+...++..+.....-
T Consensus 205 ~~~~vvgI~G~gGiGKTTLA~~l~~~l~---~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~ 281 (1153)
T PLN03210 205 EEVRMVGIWGSSGIGKTTIARALFSRLS---RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI 281 (1153)
T ss_pred CceEEEEEEcCCCCchHHHHHHHHHHHh---hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc
Confidence 5689999999999999999999999876 56888877752 1110 0 123344444444322111
Q ss_pred CcccccchHHHHHHHhcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhhcccce-eecccCCHHHHH
Q 007339 68 NEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRSMKCKQ-VAVELLSKQEAF 146 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~~~~-~~l~~L~~~ea~ 146 (607)
. ......+.+. +.++|+||||||||+..+|+.+.....+++.|++||||||+..++..++... |+++.++++||+
T Consensus 282 ~---~~~~~~~~~~-L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~ 357 (1153)
T PLN03210 282 K---IYHLGAMEER-LKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELAL 357 (1153)
T ss_pred c---cCCHHHHHHH-HhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHH
Confidence 1 1112333333 4789999999999999999988877777889999999999999987765555 999999999999
Q ss_pred HHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhccccCCCCchhhhhhHHhh
Q 007339 147 NLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFS 226 (607)
Q Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~s 226 (607)
+||.++|+....+ +....+.+++|+++|+|+||||+++|++++++ +..+|++++.+++.... ..+..++++|
T Consensus 358 ~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~~------~~I~~~L~~S 429 (1153)
T PLN03210 358 EMFCRSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGLD------GKIEKTLRVS 429 (1153)
T ss_pred HHHHHHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCcc------HHHHHHHHHh
Confidence 9999999765322 22367889999999999999999999999984 78899999999876433 6899999999
Q ss_pred hcCCChhhHHHHHHHhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHHHHHHcccccccCCCCeEEecHH
Q 007339 227 YHRLKDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLESAEDDSCVKMHDL 306 (607)
Q Consensus 227 ~~~L~~~~~~~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~H~l 306 (607)
|+.|+++..|.||+++|+|+.+..++ .+..|++..... .+..++.|+++||++... ..+.||++
T Consensus 430 Yd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-----------~~~~l~~L~~ksLi~~~~--~~~~MHdL 493 (1153)
T PLN03210 430 YDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-----------VNIGLKNLVDKSLIHVRE--DIVEMHSL 493 (1153)
T ss_pred hhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC-----------chhChHHHHhcCCEEEcC--CeEEhhhH
Confidence 99998446899999999998886543 345566654321 123489999999998754 46999999
Q ss_pred HHHHHHHHhcCCCc------EEEEcC------------cccc--------------------cCCCh-------------
Q 007339 307 IRDMALRITSKSPL------FMVKAG------------LRLL--------------------KFPSE------------- 335 (607)
Q Consensus 307 v~~~~~~~~~~~~~------~~~~~~------------~~~~--------------------~~~~~------------- 335 (607)
+|++++++++++.. ..+... ..+. .++..
T Consensus 494 l~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~ 573 (1153)
T PLN03210 494 LQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQK 573 (1153)
T ss_pred HHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccc
Confidence 99999999875420 111100 0000 00000
Q ss_pred --------------------hhhhhhcccccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC
Q 007339 336 --------------------QEWEENLERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP 395 (607)
Q Consensus 336 --------------------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 395 (607)
..|..+....+|..+ ...+|+.|++++|.+..+|.++..+++|+++++++|.....+|
T Consensus 574 ~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip 651 (1153)
T PLN03210 574 KEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP 651 (1153)
T ss_pred ccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC
Confidence 001111122244442 4567888888888888888888889999999999988788888
Q ss_pred cccCCCCCCEEeccCC-chhhhHHhccCCCCCCeeeccCCc-CCcCCCccccCCCCCCEEEcccCcchhhhhHHHhh-cc
Q 007339 396 SLAKLLALQYLDLEGT-WIEEVLECMEMLENLSHLYLSSLQ-LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAA-SL 472 (607)
Q Consensus 396 ~~~~l~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l 472 (607)
.+..+++|++|++++| .+..+|..++++++|+.|++++|+ +..+|..+ ++++|+.|++++|..... +. ..
T Consensus 652 ~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~-----~p~~~ 724 (1153)
T PLN03210 652 DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKS-----FPDIS 724 (1153)
T ss_pred ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccc-----ccccc
Confidence 8889999999999998 567899999999999999999975 77787654 799999999998753321 21 23
Q ss_pred cccccEEEeeecCcccccccccccc----------------------------CCcceeEEEEeecchhhhhhccccccc
Q 007339 473 SDGLDYFEGCFSKLKDFNRYVKSTD----------------------------GRGSKNYCLVLSESWMYYMFIRDLITD 524 (607)
Q Consensus 473 ~~~L~~L~l~~~~~~~~~~~~~~~~----------------------------~~~L~~l~l~~~~~~~~~~~~~~~~~~ 524 (607)
. +|+.|+++.+.+..++..+.... ...|+.|.+..+ ......+..+.+
T Consensus 725 ~-nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n---~~l~~lP~si~~ 800 (1153)
T PLN03210 725 T-NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI---PSLVELPSSIQN 800 (1153)
T ss_pred C-CcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC---CCccccChhhhC
Confidence 5 78888888888766654332110 011333333211 111123455777
Q ss_pred ccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCcccccccc----------ccccccccccceEEEeccc
Q 007339 525 LEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGL----------VNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 525 l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l----------~~~~~~~~~L~~L~l~~c~ 594 (607)
+++|+.|+|++|...+..+....+++|+.|++++|..+..+|..+.-+..| +..-..+++|++|++++|+
T Consensus 801 L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 801 LHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred CCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCC
Confidence 888889998887543333322256788888888888777665432111111 0001457788888888888
Q ss_pred chhhhhhc
Q 007339 595 NLKNLFSL 602 (607)
Q Consensus 595 ~l~~lp~~ 602 (607)
+|+.+|..
T Consensus 881 ~L~~l~~~ 888 (1153)
T PLN03210 881 NLQRVSLN 888 (1153)
T ss_pred CcCccCcc
Confidence 88887753
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-40 Score=328.08 Aligned_cols=263 Identities=37% Similarity=0.654 Sum_probs=207.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC---CcccccchHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE---NEDKVRRPGRLL 79 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 79 (607)
++.++|+|+|+||+||||||++++++...+ +.|+.++|++++...+..+++..|++.++..... ..+.......+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~-~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 95 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIK-NRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR 95 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHC-CCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccc-cccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 688999999999999999999999995533 7889999999999888899999999999887432 223333444444
Q ss_pred HHHhcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhhccc--ceeecccCCHHHHHHHhHhhhCCCC
Q 007339 80 GMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRSMKC--KQVAVELLSKQEAFNLFIDGVGSSI 157 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~~--~~~~l~~L~~~ea~~L~~~~~~~~~ 157 (607)
+. +.++++|||||||++...|+.+...++....+++||||||+..++..+.. ..+++++|+.+||++||.+.++...
T Consensus 96 ~~-L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 96 EL-LKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE 174 (287)
T ss_dssp HH-HCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS
T ss_pred hh-hccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44 47789999999999999998888888877789999999999988877664 3499999999999999999997764
Q ss_pred CCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhccccCCCCchhhhhhHHhhhcCCChhhHHH
Q 007339 158 LQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQ 237 (607)
Q Consensus 158 ~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~ 237 (607)
.......++.+++|++.|+|+||||.++|++++.+....+|+++++++.............+..++..||+.|+ +++|+
T Consensus 175 ~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~ 253 (287)
T PF00931_consen 175 SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLP-DELRR 253 (287)
T ss_dssp ----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSH-TCCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCC-ccHHH
Confidence 22222356789999999999999999999999765577899999999887776545567899999999999999 79999
Q ss_pred HHHHhhcCCCCCccChHHHHHHHHHhCCccc
Q 007339 238 CFLYCAQYPEDFAIPKDKLIDYWIAEGFIDE 268 (607)
Q Consensus 238 ~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~ 268 (607)
||++||+||.++.|+++.++.+|+++|++..
T Consensus 254 ~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 254 CFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred HHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 9999999999999999999999999998865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=3.2e-18 Score=197.28 Aligned_cols=142 Identities=25% Similarity=0.352 Sum_probs=73.8
Q ss_pred cccccchhhhcCCCCceEEEccCCCCc-cCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hhHH
Q 007339 342 LERRIPECFFVHMNGLKVLNLSHTDIE-VLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EVLE 418 (607)
Q Consensus 342 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~ 418 (607)
+.+.+|..+|..+++|++|++++|.+. .+|. +.+++|++|++++|.+....| .+.++.+|++|++++|.+. .+|.
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 182 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh
Confidence 344566665556666666666666554 2332 334555555555555544444 4555555555555555544 4445
Q ss_pred hccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 419 CMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 419 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
.++++++|++|++++|.+.+..+..++++++|+.|++++|.... ..+..+..++ +|++|+++.|.+.
T Consensus 183 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~-~L~~L~L~~n~l~ 249 (968)
T PLN00113 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLT-SLNHLDLVYNNLT 249 (968)
T ss_pred hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC-cCChhHhcCC-CCCEEECcCceec
Confidence 55555555555555555544433344555555555555543321 2223444555 5555555555443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=7.3e-18 Score=194.29 Aligned_cols=251 Identities=19% Similarity=0.149 Sum_probs=157.1
Q ss_pred cccccchhhhcCCCCceEEEccCCCCc-cCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hhHH
Q 007339 342 LERRIPECFFVHMNGLKVLNLSHTDIE-VLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EVLE 418 (607)
Q Consensus 342 ~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~ 418 (607)
+.+.+|.. +..+++|++|++++|.+. .+|..++++++|++|++++|.+....| .+.++.+|++|++++|++. .+|.
T Consensus 152 ~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 152 LSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred ccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 33445554 667788888888887765 667777778888888888777777666 7777888888888887776 6677
Q ss_pred hccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc-ccccccccc
Q 007339 419 CMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD-FNRYVKSTD 497 (607)
Q Consensus 419 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~~~~~~~ 497 (607)
.++++++|++|++++|++.+..+..++++++|+.|++++|.... ..+..+..++ +|++|+++.|.+.. .+..+. .
T Consensus 231 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~--~ 306 (968)
T PLN00113 231 EIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG-PIPPSIFSLQ-KLISLDLSDNSLSGEIPELVI--Q 306 (968)
T ss_pred hHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec-cCchhHhhcc-CcCEEECcCCeeccCCChhHc--C
Confidence 77788888888888887776555556778888888887765432 2335566777 88888887777653 333322 2
Q ss_pred CCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccc---c
Q 007339 498 GRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPRE---Q 573 (607)
Q Consensus 498 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~---~ 573 (607)
...|+.+.+..+. .....+..+.++++|+.|+|++|.+.+..+. +..+++|+.|++++|.....+|...... .
T Consensus 307 l~~L~~L~l~~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 307 LQNLEILHLFSNN---FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred CCCCcEEECCCCc---cCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 3446666554221 1112334456677777777777777644332 5556677777777665332222100000 0
Q ss_pred c-----------cccccccccccceEEEecccchhhhh
Q 007339 574 G-----------LVNIGKFSHDLKVLRFHYCHNLKNLF 600 (607)
Q Consensus 574 ~-----------l~~~~~~~~~L~~L~l~~c~~l~~lp 600 (607)
. ++..-..+++|+.|++++|+-.+.+|
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 0 00000456778888888776544444
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=2.2e-18 Score=170.23 Aligned_cols=246 Identities=19% Similarity=0.169 Sum_probs=187.3
Q ss_pred hhhhcccccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhh
Q 007339 338 WEENLERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEV 416 (607)
Q Consensus 338 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l 416 (607)
..+|....+...+|.++++|+.+++..|.++.+|.......+|+.|+|.+|.+..... .+..++.|+.||||.|.|+++
T Consensus 85 lsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i 164 (873)
T KOG4194|consen 85 LSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI 164 (873)
T ss_pred ccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc
Confidence 3445555566667899999999999999999999876777889999999988776655 899999999999999999988
Q ss_pred HH-hccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccccccccc
Q 007339 417 LE-CMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKS 495 (607)
Q Consensus 417 ~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~ 495 (607)
|. .+-.-.++++|+|++|.++.+..+.|.++.+|.+|.|+.|.+... ....|+.|+ +|+.|+|..|.+.... ++.+
T Consensus 165 ~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~-~L~~LdLnrN~irive-~ltF 241 (873)
T KOG4194|consen 165 PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLP-KLESLDLNRNRIRIVE-GLTF 241 (873)
T ss_pred cCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcc-hhhhhhccccceeeeh-hhhh
Confidence 85 455668999999999999999998899999999999998875443 346788999 9999999988875433 3333
Q ss_pred ccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCC-CcccCCcccceeeeeeecCcccccCccccccc
Q 007339 496 TDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICERE-EPIVLPEDVQYLEMIRVDDVASLNDVLPREQG 574 (607)
Q Consensus 496 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 574 (607)
.....|+.+++..+ .........|.+|.+++.|+|+.|++.... +++-.+.+|++|++++|. +..+. ...|
T Consensus 242 qgL~Sl~nlklqrN---~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih-~d~W--- 313 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRN---DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIH-IDSW--- 313 (873)
T ss_pred cCchhhhhhhhhhc---CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheee-cchh---
Confidence 33344555555422 222334466888899999999999887543 346677889999999884 44444 3445
Q ss_pred cccccccccccceEEEecccchhhhh
Q 007339 575 LVNIGKFSHDLKVLRFHYCHNLKNLF 600 (607)
Q Consensus 575 l~~~~~~~~~L~~L~l~~c~~l~~lp 600 (607)
.++++|++|+++++. |..++
T Consensus 314 -----sftqkL~~LdLs~N~-i~~l~ 333 (873)
T KOG4194|consen 314 -----SFTQKLKELDLSSNR-ITRLD 333 (873)
T ss_pred -----hhcccceeEeccccc-cccCC
Confidence 678999999998754 44443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=5.8e-18 Score=167.31 Aligned_cols=239 Identities=18% Similarity=0.128 Sum_probs=170.9
Q ss_pred hhcccccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH
Q 007339 340 ENLERRIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL 417 (607)
Q Consensus 340 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~ 417 (607)
.|..+.+..+.|..+.+|..|.|+.|.++.+|. .|.++++|+.|+|..|.+..... .|.++.+|+.|.+.+|++..+-
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~ 261 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD 261 (873)
T ss_pred cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc
Confidence 444455566667777888888888888887775 56668888888888776554433 7788888888888888877776
Q ss_pred H-hccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccc
Q 007339 418 E-CMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKST 496 (607)
Q Consensus 418 ~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~ 496 (607)
. .|..|.++++|+|..|+++.+..+++-+++.|+.|+|++|.+.. ..+......+ +|++|+|++|.+..+.+.-...
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r-ih~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR-IHIDSWSFTQ-KLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-eecchhhhcc-cceeEeccccccccCChhHHHH
Confidence 5 36778888888888888888888888888888999998876433 3346667777 8999999988887766542221
Q ss_pred cCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCC---CCC-cccCCcccceeeeeeecCcccccCccccc
Q 007339 497 DGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICE---REE-PIVLPEDVQYLEMIRVDDVASLNDVLPRE 572 (607)
Q Consensus 497 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~---~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 572 (607)
..+|+.|.+..+ .........|.++++|++|+|++|.+.. +.. .+.-+++|+.|.+.||. +++++. ..+
T Consensus 340 -L~~Le~LnLs~N---si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~k-rAf- 412 (873)
T KOG4194|consen 340 -LSQLEELNLSHN---SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPK-RAF- 412 (873)
T ss_pred -HHHhhhhccccc---chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecch-hhh-
Confidence 233666655532 2223344567788999999999987752 221 25558899999999984 666663 223
Q ss_pred cccccccccccccceEEEeccc
Q 007339 573 QGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 573 ~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
..+++|++||+.++.
T Consensus 413 -------sgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 413 -------SGLEALEHLDLGDNA 427 (873)
T ss_pred -------ccCcccceecCCCCc
Confidence 678999999998865
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=2.3e-18 Score=171.27 Aligned_cols=240 Identities=21% Similarity=0.202 Sum_probs=170.8
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLE 424 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~ 424 (607)
||+.+| ++..|++|+||.|++...|..+...+++-.|+|++|++.+.+. -+.++.-|-+||||+|++..+|+.+..+.
T Consensus 95 iP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 95 IPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred CCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 888877 9999999999999999999999999999999999988665443 67899999999999999999999999999
Q ss_pred CCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeE
Q 007339 425 NLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNY 504 (607)
Q Consensus 425 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 504 (607)
+|+.|.|++|.+..+...-+..+++|++|.+++.+.+....+.++..+. +|+.++++.|++..+|+-+-. ...|..|
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~-NL~dvDlS~N~Lp~vPecly~--l~~LrrL 250 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH-NLRDVDLSENNLPIVPECLYK--LRNLRRL 250 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh-hhhhccccccCCCcchHHHhh--hhhhhee
Confidence 9999999999877665555677888888888876655555555666666 777777777777665553321 1222222
Q ss_pred EEEeec-------------------chhhhhhcccccccccccceeeeeeeccCC--CC---------------------
Q 007339 505 CLVLSE-------------------SWMYYMFIRDLITDLEVDKSVRLFACKICE--RE--------------------- 542 (607)
Q Consensus 505 ~l~~~~-------------------~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~~--------------------- 542 (607)
.++.+. +.......|+.++.++.|+.|.+.+|+++- .+
T Consensus 251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl 330 (1255)
T KOG0444|consen 251 NLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL 330 (1255)
T ss_pred ccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc
Confidence 222110 111223455666677777777777776542 11
Q ss_pred --CcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEecccchhhhh
Q 007339 543 --EPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLKNLF 600 (607)
Q Consensus 543 --~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~lp 600 (607)
..+..+..|+.|.|+.|..+ .+|+-. ..++.|+.||+.++|+|---|
T Consensus 331 VPEglcRC~kL~kL~L~~NrLi-TLPeaI----------HlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 331 VPEGLCRCVKLQKLKLDHNRLI-TLPEAI----------HLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred CchhhhhhHHHHHhccccccee-echhhh----------hhcCCcceeeccCCcCccCCC
Confidence 11334567777777766533 344322 458999999999999885433
No 9
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.61 E-value=2.9e-14 Score=163.64 Aligned_cols=276 Identities=14% Similarity=0.170 Sum_probs=176.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHHccCCCCC-------------c
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ-PLDLFKLQTEIATALKQSLPEN-------------E 69 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~-------------~ 69 (607)
..+++.|+|++|.||||++.+++... . .+.|+++.. ..+...+...++..++...... .
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYA 103 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcC
Confidence 45899999999999999999998542 2 599999964 4466677777777775322110 0
Q ss_pred ccccchHHHHHHHhc-CCcEEEEEecCCCccc---ccccccCCCCCCCCcEEEEEeCchhhhhh--c--ccceeecc---
Q 007339 70 DKVRRPGRLLGMLKA-KEKFVLILDDMWEAFP---LQEIGIPEPSEENGCKLVITTRLYRVCRS--M--KCKQVAVE--- 138 (607)
Q Consensus 70 ~~~~~~~~l~~~~~~-~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~IliTtR~~~~~~~--~--~~~~~~l~--- 138 (607)
+.......+...+.. +.+++||+||+..... .+.+...+.....+.++|||||....... . .....++.
T Consensus 104 ~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~ 183 (903)
T PRK04841 104 SLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQ 183 (903)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHh
Confidence 011122334444433 7899999999987632 11222223333456789899997432211 1 11124555
Q ss_pred -cCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhccccCCCCch
Q 007339 139 -LLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDT 217 (607)
Q Consensus 139 -~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 217 (607)
+|+.+|+.++|....+... ..+.+.+|.+.|+|+|+++..++..+....... ......+.. ....
T Consensus 184 l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~------~~~~ 249 (903)
T PRK04841 184 LAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAG------INAS 249 (903)
T ss_pred CCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcC------CCch
Confidence 8999999999988877642 456788999999999999999987775432210 011111100 0113
Q ss_pred hhhhhHHh-hhcCCChhhHHHHHHHhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHHHHHHcccccc-c
Q 007339 218 KVFGRLEF-SYHRLKDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLES-A 295 (607)
Q Consensus 218 ~~~~~~~~-s~~~L~~~~~~~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~-~ 295 (607)
.+...+.. .|+.|+ ++.+++++..|+++ . ++.+..- .+.. .+.....+++|.+.+++.. .
T Consensus 250 ~~~~~l~~~v~~~l~-~~~~~~l~~~a~~~-~--~~~~l~~------~l~~--------~~~~~~~L~~l~~~~l~~~~~ 311 (903)
T PRK04841 250 HLSDYLVEEVLDNVD-LETRHFLLRCSVLR-S--MNDALIV------RVTG--------EENGQMRLEELERQGLFIQRM 311 (903)
T ss_pred hHHHHHHHHHHhcCC-HHHHHHHHHhcccc-c--CCHHHHH------HHcC--------CCcHHHHHHHHHHCCCeeEee
Confidence 45554433 478999 88999999999986 2 3323221 1111 1234677999999998653 3
Q ss_pred C-CCCeEEecHHHHHHHHHHhcCC
Q 007339 296 E-DDSCVKMHDLIRDMALRITSKS 318 (607)
Q Consensus 296 ~-~~~~~~~H~lv~~~~~~~~~~~ 318 (607)
+ .+.+|+.|++++++++.....+
T Consensus 312 ~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 312 DDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred cCCCCEEehhHHHHHHHHHHHHhc
Confidence 3 3468999999999999887433
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=6.9e-17 Score=160.88 Aligned_cols=137 Identities=26% Similarity=0.324 Sum_probs=84.2
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCC-CCC-cccCCCCCCEEeccCCchhhhHHhccCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLK-RVP-SLAKLLALQYLDLEGTWIEEVLECMEML 423 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l 423 (607)
+|++ ++++.+|..|.+++|++..+-..++.++.|+.+.++.|++.. -+| .+.++.-|..||||+|.+++.|..+..-
T Consensus 47 vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~A 125 (1255)
T KOG0444|consen 47 VPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYA 125 (1255)
T ss_pred ChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhh
Confidence 4555 556666666666666666555556666666666666665433 233 6666666666666666666666666666
Q ss_pred CCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCc
Q 007339 424 ENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKL 486 (607)
Q Consensus 424 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 486 (607)
+++..|+||+|++..+|...+.+++.|-.|+||.|.. ...+.++..|. +|++|.+++|++
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL--e~LPPQ~RRL~-~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL--EMLPPQIRRLS-MLQTLKLSNNPL 185 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccchh--hhcCHHHHHHh-hhhhhhcCCChh
Confidence 6666666666666666666666666666666665542 22223455566 666666666654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.56 E-value=1.6e-14 Score=167.09 Aligned_cols=226 Identities=20% Similarity=0.203 Sum_probs=136.0
Q ss_pred cCCCCceEEEccCCC-CccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCC-chhhhHHhccCCCCCCe
Q 007339 352 VHMNGLKVLNLSHTD-IEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGT-WIEEVLECMEMLENLSH 428 (607)
Q Consensus 352 ~~l~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~-~l~~l~~~~~~l~~L~~ 428 (607)
..+++|+.|+++++. +..+|. +..+++|+.|++++|.....+| .+.++.+|+.|++++| ++..+|..+ ++++|+.
T Consensus 631 ~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~ 708 (1153)
T PLN03210 631 HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYR 708 (1153)
T ss_pred ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCE
Confidence 456666777766553 445553 5566666666666666555555 5666666666666665 444555433 3444444
Q ss_pred ee---------------------ccCCcCCcCCCcc-----------------------------ccCCCCCCEEEcccC
Q 007339 429 LY---------------------LSSLQLKKFPTGI-----------------------------LPRLRNLYKLKLSFG 458 (607)
Q Consensus 429 L~---------------------l~~~~l~~~~~~~-----------------------------~~~l~~L~~L~l~~~ 458 (607)
|+ +++|.+..+|... ...+++|+.|++++|
T Consensus 709 L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 709 LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred EeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 44 4444444444321 001134555555554
Q ss_pred cchhhhhHHHhhcccccccEEEeeecC-ccccccccccccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeec
Q 007339 459 NEALRETVEEAASLSDGLDYFEGCFSK-LKDFNRYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACK 537 (607)
Q Consensus 459 ~~~~~~~~~~l~~l~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 537 (607)
..... .+..++.++ +|+.|++++|. +..++... ....|+.+.+..+..... .+.. ..+|+.|+|++|.
T Consensus 789 ~~l~~-lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~---~p~~---~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 789 PSLVE-LPSSIQNLH-KLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRT---FPDI---STNISDLNLSRTG 857 (1153)
T ss_pred CCccc-cChhhhCCC-CCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCcccc---cccc---ccccCEeECCCCC
Confidence 32222 234566777 77777777654 34344332 234466666653322111 1111 2578888999888
Q ss_pred cCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEecccchhhhh
Q 007339 538 ICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLKNLF 600 (607)
Q Consensus 538 ~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~lp 600 (607)
+...+..+..+++|+.|++++|++++.++.. . ..+++|+.|++++|++|..++
T Consensus 858 i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~--~--------~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 858 IEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN--I--------SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CccChHHHhcCCCCCEEECCCCCCcCccCcc--c--------ccccCCCeeecCCCccccccc
Confidence 8776656778899999999999999887732 1 568999999999999998654
No 12
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.51 E-value=1.4e-12 Score=136.21 Aligned_cols=277 Identities=16% Similarity=0.194 Sum_probs=183.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHHccCCCCCcccc---------c
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-LDLFKLQTEIATALKQSLPENEDKV---------R 73 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~---------~ 73 (607)
+-|.+.|..|+|.||||++.+++.... .-..+.|++++.. .++..+..-++..++.......+.. .
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~~~~----~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~ 111 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRELAA----DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYV 111 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHHhcC----cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccc
Confidence 568999999999999999999998442 2334999998764 4688888888888875433322221 2
Q ss_pred ----chHHHHHHHh-cCCcEEEEEecCCCccc---ccccccCCCCCCCCcEEEEEeCchhhhhhcccce----eecc---
Q 007339 74 ----RPGRLLGMLK-AKEKFVLILDDMWEAFP---LQEIGIPEPSEENGCKLVITTRLYRVCRSMKCKQ----VAVE--- 138 (607)
Q Consensus 74 ----~~~~l~~~~~-~~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~~~~----~~l~--- 138 (607)
.+..++..+. -.++..+||||..-..+ -..+...+....++-..+||||+.+.....+... .++.
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~ 191 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEE 191 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHh
Confidence 2333333332 24678999999765422 2223333444557889999999876654332222 3333
Q ss_pred -cCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhccccCCCCch
Q 007339 139 -LLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDT 217 (607)
Q Consensus 139 -~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 217 (607)
.|+.+|+.++|..+.+... ....+..+.+..+|++-|+..++=.++...+...-...+.. ...
T Consensus 192 Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG----------~~~ 255 (894)
T COG2909 192 LRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG----------AAS 255 (894)
T ss_pred hcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc----------hHH
Confidence 3899999999988875543 45678999999999999999999888843332222111110 001
Q ss_pred hhh-hhHHhhhcCCChhhHHHHHHHhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHHHHHHcccccc--
Q 007339 218 KVF-GRLEFSYHRLKDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLES-- 294 (607)
Q Consensus 218 ~~~-~~~~~s~~~L~~~~~~~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~-- 294 (607)
-+. =..+-.+++|| +++|..++.+|++..-. +.+... +. .++.+...+++|.+.++.-.
T Consensus 256 ~l~dYL~eeVld~Lp-~~l~~FLl~~svl~~f~----~eL~~~-----Lt--------g~~ng~amLe~L~~~gLFl~~L 317 (894)
T COG2909 256 HLSDYLVEEVLDRLP-PELRDFLLQTSVLSRFN----DELCNA-----LT--------GEENGQAMLEELERRGLFLQRL 317 (894)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHhHHHhh----HHHHHH-----Hh--------cCCcHHHHHHHHHhCCCceeee
Confidence 111 12344578999 88999999999975221 222221 11 12345566999999996663
Q ss_pred cCCCCeEEecHHHHHHHHHHhcCC
Q 007339 295 AEDDSCVKMHDLIRDMALRITSKS 318 (607)
Q Consensus 295 ~~~~~~~~~H~lv~~~~~~~~~~~ 318 (607)
.+++.+|+.|+++.+|.+.....+
T Consensus 318 dd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 318 DDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred cCCCceeehhHHHHHHHHhhhccc
Confidence 355699999999999999888764
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=6e-17 Score=153.36 Aligned_cols=226 Identities=24% Similarity=0.242 Sum_probs=173.7
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLEN 425 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~ 425 (607)
+|+. .+.+..++.++++.|.+..+|..++.+..|+.++.++|.+....++++.+..|+.++..+|+++++|++++++.+
T Consensus 83 lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~ 161 (565)
T KOG0472|consen 83 LPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSK 161 (565)
T ss_pred CCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHH
Confidence 4544 567778888888888888888888888899999999888777777888999999999999999999999999999
Q ss_pred CCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEE
Q 007339 426 LSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYC 505 (607)
Q Consensus 426 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 505 (607)
|..+++.+|.++.+|+..+. ++.|++|+...|- ....+..++.+. +|.-|.+..|.+..+|++-+ |..|..++
T Consensus 162 l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~--L~tlP~~lg~l~-~L~~LyL~~Nki~~lPef~g---cs~L~Elh 234 (565)
T KOG0472|consen 162 LSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL--LETLPPELGGLE-SLELLYLRRNKIRFLPEFPG---CSLLKELH 234 (565)
T ss_pred HHHhhccccchhhCCHHHHH-HHHHHhcccchhh--hhcCChhhcchh-hhHHHHhhhcccccCCCCCc---cHHHHHHH
Confidence 99999999999999888754 8899988887653 344457788888 88888888888888775543 23344433
Q ss_pred EEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCcccccccccccccccccc
Q 007339 506 LVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDL 585 (607)
Q Consensus 506 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L 585 (607)
+ |. +.......+...+++++..|+|++|++.+.+..+-.+.+|..|++++|. ++++| . .| +++ .|
T Consensus 235 ~--g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp---~---sL----gnl-hL 299 (565)
T KOG0472|consen 235 V--GE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLP---Y---SL----GNL-HL 299 (565)
T ss_pred h--cc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCC---c---cc----ccc-ee
Confidence 3 22 2222333444568899999999999998877767788899999999883 33333 2 23 777 89
Q ss_pred ceEEEeccc
Q 007339 586 KVLRFHYCH 594 (607)
Q Consensus 586 ~~L~l~~c~ 594 (607)
++|-+.++|
T Consensus 300 ~~L~leGNP 308 (565)
T KOG0472|consen 300 KFLALEGNP 308 (565)
T ss_pred eehhhcCCc
Confidence 999888877
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=2.5e-15 Score=142.57 Aligned_cols=117 Identities=26% Similarity=0.320 Sum_probs=94.7
Q ss_pred hhhhcccccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC--cccCCCCCCEEeccCCchhh
Q 007339 338 WEENLERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP--SLAKLLALQYLDLEGTWIEE 415 (607)
Q Consensus 338 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~ 415 (607)
...|..+.+|++ ++.|.+|..|++..|.+..+| .|++|..|..+.++.|.+. .+| ...++.+|.+||++.|++++
T Consensus 190 ~~~N~L~tlP~~-lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 190 CNSNLLETLPPE-LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred cchhhhhcCChh-hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc
Confidence 345667778887 678888888999999988888 7888888888888877644 444 45688888889998888888
Q ss_pred hHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCc
Q 007339 416 VLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGN 459 (607)
Q Consensus 416 l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 459 (607)
+|..+..+.+|.+||+++|.++.+|... +++ +|+.|-+.+|.
T Consensus 267 ~Pde~clLrsL~rLDlSNN~is~Lp~sL-gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNNDISSLPYSL-GNL-HLKFLALEGNP 308 (565)
T ss_pred CchHHHHhhhhhhhcccCCccccCCccc-ccc-eeeehhhcCCc
Confidence 8888888888889999888888888775 888 88888777763
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=2.1e-14 Score=136.11 Aligned_cols=236 Identities=18% Similarity=0.197 Sum_probs=176.0
Q ss_pred EEEEcCcccccCCCh-------hhhhhhcccccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCC
Q 007339 321 FMVKAGLRLLKFPSE-------QEWEENLERRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLK 392 (607)
Q Consensus 321 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~ 392 (607)
.+...+..++++|.. .....|....||+.+|..+++||+|||+.|+|+.+ |+.|.+++.|..|-+.+++.+.
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 344455566666554 34457777889999999999999999999999966 6789999999888887755566
Q ss_pred CCC--cccCCCCCCEEeccCCchhhhH-HhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcch--------
Q 007339 393 RVP--SLAKLLALQYLDLEGTWIEEVL-ECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEA-------- 461 (607)
Q Consensus 393 ~~~--~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-------- 461 (607)
.+| .|.++..|+.|.+.-|.+.-++ ..+..+++|..|.+..|.+..++.+.|..+.+++++.+..|...
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 666 7899999999888888877554 47889999999999999988888877888888887766654300
Q ss_pred -----------------------------------------------------hhhhHHHhhcccccccEEEeeecCccc
Q 007339 462 -----------------------------------------------------LRETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 462 -----------------------------------------------------~~~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
...+..-|..|+ +|+.|++++|.++.
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITR 288 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccch
Confidence 001124567888 99999999999987
Q ss_pred cccccccccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecC
Q 007339 489 FNRYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDD 561 (607)
Q Consensus 489 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 561 (607)
+.+..... ..+++.+.+. .+....+....|.+++.|+.|+|.+|+++...+. +....+|.+|++-+|+.
T Consensus 289 i~~~aFe~-~a~l~eL~L~---~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 289 IEDGAFEG-AAELQELYLT---RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcc-hhhhhhhhcC---cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 66543221 2334544444 2333344556788999999999999999877665 77788899999998873
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=1e-14 Score=122.35 Aligned_cols=147 Identities=25% Similarity=0.274 Sum_probs=126.3
Q ss_pred ccccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchh--hhHHhc
Q 007339 343 ERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIE--EVLECM 420 (607)
Q Consensus 343 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--~l~~~~ 420 (607)
...+|+. .+.+.+|++|++.+|+++.+|.++++++.|+.|+++-|.+....-.|+.++.|++||+++|++. .+|..|
T Consensus 45 l~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnf 123 (264)
T KOG0617|consen 45 LTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNF 123 (264)
T ss_pred eeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcch
Confidence 4457777 6799999999999999999999999999999999998875543339999999999999999887 788888
Q ss_pred cCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccc
Q 007339 421 EMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVK 494 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~ 494 (607)
..++.|+-|+|+.|.+..+|+.+ +++++|+.|.+..|... ..+..++.+. .|++|.+.+|.+.-++..+.
T Consensus 124 f~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdndll--~lpkeig~lt-~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 124 FYMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLL--SLPKEIGDLT-RLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred hHHHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccCchh--hCcHHHHHHH-HHHHHhcccceeeecChhhh
Confidence 89999999999999999999886 99999999999988643 3457788899 99999999998876665544
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.37 E-value=2.5e-12 Score=138.52 Aligned_cols=200 Identities=17% Similarity=0.119 Sum_probs=98.2
Q ss_pred CceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhcc--------------
Q 007339 356 GLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECME-------------- 421 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~-------------- 421 (607)
+|+.|+++.|+++.+|.. .++|++|++++|.+.. +|.+ ..+|+.|++++|.++.+|....
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lts-LP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~ 296 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTS-LPVL--PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTS 296 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCc-ccCc--ccccceeeccCCchhhhhhchhhcCEEECcCCcccc
Confidence 455555555555555531 3455555555554442 2211 2344555555554444443110
Q ss_pred ---CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccC
Q 007339 422 ---MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDG 498 (607)
Q Consensus 422 ---~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~ 498 (607)
.+++|+.|++++|+++.+|.. ..+|+.|++++|+... +..++.+|+.|++++|.+..++...
T Consensus 297 LP~~p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~L~~------LP~lp~~Lq~LdLS~N~Ls~LP~lp----- 361 (788)
T PRK15387 297 LPVLPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTS------LPTLPSGLQELSVSDNQLASLPTLP----- 361 (788)
T ss_pred ccccccccceeECCCCccccCCCC----cccccccccccCcccc------ccccccccceEecCCCccCCCCCCC-----
Confidence 124455555555555554331 1234444555443221 1222226777777777766655421
Q ss_pred CcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccc
Q 007339 499 RGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNI 578 (607)
Q Consensus 499 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~ 578 (607)
..|..|.+..+ ... ..+.. .++|+.|+|++|.+...+. .+++|+.|++++|. ++.+|.
T Consensus 362 ~~L~~L~Ls~N--~L~--~LP~l---~~~L~~LdLs~N~Lt~LP~---l~s~L~~LdLS~N~-LssIP~----------- 419 (788)
T PRK15387 362 SELYKLWAYNN--RLT--SLPAL---PSGLKELIVSGNRLTSLPV---LPSELKELMVSGNR-LTSLPM----------- 419 (788)
T ss_pred cccceehhhcc--ccc--cCccc---ccccceEEecCCcccCCCC---cccCCCEEEccCCc-CCCCCc-----------
Confidence 12333333311 110 01111 2467788888887765432 34678888888874 444442
Q ss_pred cccccccceEEEecccchhhhhh
Q 007339 579 GKFSHDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 579 ~~~~~~L~~L~l~~c~~l~~lp~ 601 (607)
.+.+|+.|++++|. |+.||+
T Consensus 420 --l~~~L~~L~Ls~Nq-Lt~LP~ 439 (788)
T PRK15387 420 --LPSGLLSLSVYRNQ-LTRLPE 439 (788)
T ss_pred --chhhhhhhhhccCc-ccccCh
Confidence 13467778887744 566665
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=1e-14 Score=122.41 Aligned_cols=170 Identities=19% Similarity=0.215 Sum_probs=80.9
Q ss_pred CCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 353 HMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
++.+.+.|-+++|.++.+|..+..+.+|+.|++++|++....++++.++.|+.|+++-|++..+|.+||.++-|+.|+|.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 44444555555555555555555555555555554443322224555555555555544444445555555555555555
Q ss_pred CCcCCc-CCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecc
Q 007339 433 SLQLKK-FPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSES 511 (607)
Q Consensus 433 ~~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 511 (607)
+|++.+ .-|+.|--++.|+.|+|+.|... ..+..++++. +|+.|.+..|.+..+
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt-~lqil~lrdndll~l---------------------- 165 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLT-NLQILSLRDNDLLSL---------------------- 165 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhc-ceeEEeeccCchhhC----------------------
Confidence 444431 11122234444444444443211 1123344444 444444444443332
Q ss_pred hhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeec
Q 007339 512 WMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 512 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (607)
+..+..+..|++|++.+|.+.-. +|.|-.|++-++.
T Consensus 166 -------pkeig~lt~lrelhiqgnrl~vl------ppel~~l~l~~~k 201 (264)
T KOG0617|consen 166 -------PKEIGDLTRLRELHIQGNRLTVL------PPELANLDLVGNK 201 (264)
T ss_pred -------cHHHHHHHHHHHHhcccceeeec------ChhhhhhhhhhhH
Confidence 23334456688888888887644 3445555555444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=6.7e-13 Score=143.73 Aligned_cols=205 Identities=16% Similarity=0.185 Sum_probs=85.8
Q ss_pred CceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCC
Q 007339 356 GLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSL 434 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~ 434 (607)
+|+.|++++|.++.+|..+. .+|+.|++++|.+. .+| .+. .+|+.|++++|+++.+|..+. ++|+.|++++|
T Consensus 221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC
Confidence 44444444444444443222 23444444444433 222 221 244444444444444443322 24444444444
Q ss_pred cCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchhh
Q 007339 435 QLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWMY 514 (607)
Q Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 514 (607)
+++.+|... .++|+.|++++|..... +.. ..+ +|+.|+++.|.+..++..+. ..|+.|++..+. ..
T Consensus 294 ~Lt~LP~~l---p~sL~~L~Ls~N~Lt~L--P~~--l~~-sL~~L~Ls~N~Lt~LP~~l~----~sL~~L~Ls~N~-L~- 359 (754)
T PRK15370 294 SIRTLPAHL---PSGITHLNVQSNSLTAL--PET--LPP-GLKTLEAGENALTSLPASLP----PELQVLDVSKNQ-IT- 359 (754)
T ss_pred ccccCcccc---hhhHHHHHhcCCccccC--Ccc--ccc-cceeccccCCccccCChhhc----CcccEEECCCCC-CC-
Confidence 444444321 12344444444432211 000 113 55555555555554443221 234444444221 11
Q ss_pred hhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEeccc
Q 007339 515 YMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 515 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
..+..+ .++|+.|+|++|++...+.. .+.+|+.|++++|. ++.+|.. +......++++..|++.+++
T Consensus 360 --~LP~~l--p~~L~~LdLs~N~Lt~LP~~--l~~sL~~LdLs~N~-L~~LP~s------l~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 360 --VLPETL--PPTITTLDVSRNALTNLPEN--LPAALQIMQASRNN-LVRLPES------LPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred --cCChhh--cCCcCEEECCCCcCCCCCHh--HHHHHHHHhhccCC-cccCchh------HHHHhhcCCCccEEEeeCCC
Confidence 011111 14566666666655543321 22346666666653 3333321 00111335677777777766
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=1.4e-12 Score=141.17 Aligned_cols=206 Identities=17% Similarity=0.187 Sum_probs=147.3
Q ss_pred CCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccC
Q 007339 355 NGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSS 433 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~ 433 (607)
++|+.|++++|.++.+|..+. .+|+.|++++|.+. .+| .+. .+|+.|++++|++..+|..+. .+|+.|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 578999999999999987654 58999999998866 445 443 479999999999999887664 5899999999
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchh
Q 007339 434 LQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWM 513 (607)
Q Consensus 434 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 513 (607)
|+++.+|..+ ..+|+.|++++|+..... ..+ .+ +|+.|+++.|.+..++..+. ..|+.|.+..+. ..
T Consensus 272 N~L~~LP~~l---~~sL~~L~Ls~N~Lt~LP--~~l--p~-sL~~L~Ls~N~Lt~LP~~l~----~sL~~L~Ls~N~-Lt 338 (754)
T PRK15370 272 NKISCLPENL---PEELRYLSVYDNSIRTLP--AHL--PS-GITHLNVQSNSLTALPETLP----PGLKTLEAGENA-LT 338 (754)
T ss_pred CccCcccccc---CCCCcEEECCCCccccCc--ccc--hh-hHHHHHhcCCccccCCcccc----ccceeccccCCc-cc
Confidence 9999887654 258999999998654321 111 13 78889999998877654332 346666655321 11
Q ss_pred hhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEecc
Q 007339 514 YYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYC 593 (607)
Q Consensus 514 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c 593 (607)
..+..+ .++|+.|+|++|++...+. ..+++|+.|+|++|. ++.+|. . -.+.|+.|++++|
T Consensus 339 ---~LP~~l--~~sL~~L~Ls~N~L~~LP~--~lp~~L~~LdLs~N~-Lt~LP~---~---------l~~sL~~LdLs~N 398 (754)
T PRK15370 339 ---SLPASL--PPELQVLDVSKNQITVLPE--TLPPTITTLDVSRNA-LTNLPE---N---------LPAALQIMQASRN 398 (754)
T ss_pred ---cCChhh--cCcccEEECCCCCCCcCCh--hhcCCcCEEECCCCc-CCCCCH---h---------HHHHHHHHhhccC
Confidence 122223 2689999999999876543 345789999999984 555552 1 1347999999986
Q ss_pred cchhhhhh
Q 007339 594 HNLKNLFS 601 (607)
Q Consensus 594 ~~l~~lp~ 601 (607)
. |..+|.
T Consensus 399 ~-L~~LP~ 405 (754)
T PRK15370 399 N-LVRLPE 405 (754)
T ss_pred C-cccCch
Confidence 4 556654
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.35 E-value=3.4e-12 Score=137.42 Aligned_cols=204 Identities=16% Similarity=0.115 Sum_probs=137.8
Q ss_pred CCCceEEEccCCCCccCCccccCCccCcEeecccccCCC-------------------CCCcccCCCCCCEEeccCCchh
Q 007339 354 MNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLK-------------------RVPSLAKLLALQYLDLEGTWIE 414 (607)
Q Consensus 354 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~-------------------~~~~~~~l~~L~~L~l~~~~l~ 414 (607)
+++|+.|++++|.++.+|.. .++|+.|++++|.+.. .+|. .+++|+.|++++|.++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLA 315 (788)
T ss_pred CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccccccc--cccccceeECCCCccc
Confidence 46778888888877776642 2344444444443221 2221 2367999999999998
Q ss_pred hhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccc
Q 007339 415 EVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVK 494 (607)
Q Consensus 415 ~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~ 494 (607)
.+|.. ..+|+.|++++|+++.+|. -..+|+.|++++|+... +..++.+|+.|++++|.+..++...
T Consensus 316 ~Lp~l---p~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~------LP~lp~~L~~L~Ls~N~L~~LP~l~- 381 (788)
T PRK15387 316 SLPAL---PSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLAS------LPTLPSELYKLWAYNNRLTSLPALP- 381 (788)
T ss_pred cCCCC---cccccccccccCccccccc----cccccceEecCCCccCC------CCCCCcccceehhhccccccCcccc-
Confidence 88753 2468889999999998874 22589999999987543 2222338899999999988766532
Q ss_pred cccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccc
Q 007339 495 STDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQG 574 (607)
Q Consensus 495 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 574 (607)
..|+.+.+..+. ... .+.. .++|+.|++++|.+...+. .+.+|+.|++++|. ++.+|. .+
T Consensus 382 ----~~L~~LdLs~N~-Lt~---LP~l---~s~L~~LdLS~N~LssIP~---l~~~L~~L~Ls~Nq-Lt~LP~--sl--- 441 (788)
T PRK15387 382 ----SGLKELIVSGNR-LTS---LPVL---PSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPE--SL--- 441 (788)
T ss_pred ----cccceEEecCCc-ccC---CCCc---ccCCCEEEccCCcCCCCCc---chhhhhhhhhccCc-ccccCh--HH---
Confidence 347777775321 111 1222 2679999999999886543 35679999999885 555552 12
Q ss_pred cccccccccccceEEEecccchhhhhh
Q 007339 575 LVNIGKFSHDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 575 l~~~~~~~~~L~~L~l~~c~~l~~lp~ 601 (607)
..+++|+.|++++|+--+.+|.
T Consensus 442 -----~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 442 -----IHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred -----hhccCCCeEECCCCCCCchHHH
Confidence 6689999999999986555443
No 22
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.31 E-value=1.2e-10 Score=113.57 Aligned_cols=181 Identities=14% Similarity=0.186 Sum_probs=115.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHH---
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLL--- 79 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~--- 79 (607)
.+.+++.|+|++|+||||+++.++...... .. .+.|+ +....+..+++..++..++.+... .+......++.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~--~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQE--RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCC--Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 345689999999999999999999987521 11 13333 233456778888999888775432 22222222332
Q ss_pred -HHHhcCCcEEEEEecCCCcc--cccccccCC---CCCCCCcEEEEEeCchhhhhhc--------c---cceeecccCCH
Q 007339 80 -GMLKAKEKFVLILDDMWEAF--PLQEIGIPE---PSEENGCKLVITTRLYRVCRSM--------K---CKQVAVELLSK 142 (607)
Q Consensus 80 -~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~---~~~~~~~~IliTtR~~~~~~~~--------~---~~~~~l~~L~~ 142 (607)
.....+++.++|+|+++... .++.+.... ........|++|.... ..... . ...+++++++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 22336788999999998874 233332111 1112233456666532 21111 1 11278999999
Q ss_pred HHHHHHhHhhhCCCCC-CCccchHHHHHHHHHHcCCchHHHHHHHHhh
Q 007339 143 QEAFNLFIDGVGSSIL-QVPILNKEIINEVVEECGCLPLAIVTVAASM 189 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l 189 (607)
+|..+++..++..... ......++.++.|++.++|.|..|..++..+
T Consensus 195 ~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 195 EETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999887743321 1112367899999999999999999888765
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.31 E-value=6.8e-14 Score=146.22 Aligned_cols=209 Identities=22% Similarity=0.217 Sum_probs=148.0
Q ss_pred ccccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhcc-
Q 007339 343 ERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECME- 421 (607)
Q Consensus 343 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~- 421 (607)
...+| ++...+.+|..++..+|.+..+|..+....+|++|.+..|.+....|...++++|++|+|..|++..+|+.+-
T Consensus 253 l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 253 LSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred hhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh
Confidence 34477 5678999999999999999999988888999999999998877777788889999999999998888776432
Q ss_pred -------------------------CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccc
Q 007339 422 -------------------------MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGL 476 (607)
Q Consensus 422 -------------------------~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L 476 (607)
.+..|+.|++.+|.++.-....+-+.++|++|+|++|..... +...+.++. .|
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f-pas~~~kle-~L 409 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF-PASKLRKLE-EL 409 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC-CHHHHhchH-Hh
Confidence 133456667777777654444567888888888888753322 225577788 88
Q ss_pred cEEEeeecCccccccccccccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCC-cccceee
Q 007339 477 DYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLP-EDVQYLE 555 (607)
Q Consensus 477 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~ 555 (607)
++|.+++|.+..++..+... ..|+.|... ++... ..| .+..++.|+.++|+.|++....-....+ ++|++|+
T Consensus 410 eeL~LSGNkL~~Lp~tva~~--~~L~tL~ah---sN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 410 EELNLSGNKLTTLPDTVANL--GRLHTLRAH---SNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred HHHhcccchhhhhhHHHHhh--hhhHHHhhc---CCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceee
Confidence 88888888888777554432 334443332 11111 122 4556688888888888877544333344 7888888
Q ss_pred eeeecC
Q 007339 556 MIRVDD 561 (607)
Q Consensus 556 l~~~~~ 561 (607)
++||..
T Consensus 483 lSGN~~ 488 (1081)
T KOG0618|consen 483 LSGNTR 488 (1081)
T ss_pred ccCCcc
Confidence 888864
No 24
>PF05729 NACHT: NACHT domain
Probab=99.30 E-value=1.7e-11 Score=110.12 Aligned_cols=143 Identities=22% Similarity=0.265 Sum_probs=92.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCC---CCeEEEEEeCCCCCHH---HHHHHHHHHHccCCCCCcccccchHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNK---FNDVIWVTVSQPLDLF---KLQTEIATALKQSLPENEDKVRRPGRLL 79 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 79 (607)
|++.|+|.+|+||||+++.++..+...... +..++|++.+...... .+...+............. ...
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~------~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE------LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH------HHH
Confidence 689999999999999999999998654211 3457788776544322 3444444444322111111 223
Q ss_pred HHHhcCCcEEEEEecCCCcccccc---------cc-cCCCC-CCCCcEEEEEeCchhhh---hhcccc-eeecccCCHHH
Q 007339 80 GMLKAKEKFVLILDDMWEAFPLQE---------IG-IPEPS-EENGCKLVITTRLYRVC---RSMKCK-QVAVELLSKQE 144 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~~~~~~---------l~-~~~~~-~~~~~~IliTtR~~~~~---~~~~~~-~~~l~~L~~~e 144 (607)
......+++++|+|++|+...-.. +. ..+.. ...+.+++||+|..... ...... .+++++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 333468999999999998854211 11 12221 24588999999987662 223333 38999999999
Q ss_pred HHHHhHhhhC
Q 007339 145 AFNLFIDGVG 154 (607)
Q Consensus 145 a~~L~~~~~~ 154 (607)
..+++.+.+.
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9999988763
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=3.1e-13 Score=141.39 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=167.1
Q ss_pred CCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 354 MNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 354 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
-.+|++++++.|+++.+|.+++.+.+|+.++..+|.+ ..+| .+....+|+.|.+..|.+..+|+....++.|++|+|.
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeeh
Confidence 3578999999999999999999999999999999987 4555 8999999999999999999999999999999999999
Q ss_pred CCcCCcCCCccccCCC-------------------------CCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 433 SLQLKKFPTGILPRLR-------------------------NLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 433 ~~~l~~~~~~~~~~l~-------------------------~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
.|++..+|+..+..+. .|+.|++.+|. ..+..+..+...+ +|+.|+|++|.+.
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-Ltd~c~p~l~~~~-hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-LTDSCFPVLVNFK-HLKVLHLSYNRLN 396 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-ccccchhhhcccc-ceeeeeecccccc
Confidence 9999998876543222 23344444433 3334445677788 9999999999887
Q ss_pred ccccccccccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccC
Q 007339 488 DFNRYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLND 567 (607)
Q Consensus 488 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 567 (607)
.+++... .....|+.|.++ |+... -.++.+..++.|++|...+|.+...+ .+..++.|+.+|++.|. ++.+-
T Consensus 397 ~fpas~~-~kle~LeeL~LS-GNkL~---~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~- 468 (1081)
T KOG0618|consen 397 SFPASKL-RKLEELEELNLS-GNKLT---TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN-LSEVT- 468 (1081)
T ss_pred cCCHHHH-hchHHhHHHhcc-cchhh---hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch-hhhhh-
Confidence 7776432 223447777776 32222 23467778899999999999888766 46778889999999774 33222
Q ss_pred ccccccccccccccccccceEEEecccc
Q 007339 568 VLPREQGLVNIGKFSHDLKVLRFHYCHN 595 (607)
Q Consensus 568 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 595 (607)
++.. .--|+|++||+++++.
T Consensus 469 l~~~--------~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 469 LPEA--------LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhh--------CCCcccceeeccCCcc
Confidence 1111 1128999999999985
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=4.2e-12 Score=127.36 Aligned_cols=237 Identities=16% Similarity=0.055 Sum_probs=113.5
Q ss_pred hcCCCCceEEEccCCCCc-----cCCccccCCccCcEeecccccCCC------CCC-cccCCCCCCEEeccCCchh-hhH
Q 007339 351 FVHMNGLKVLNLSHTDIE-----VLPSSISDLTNLRSLLLRWCGRLK------RVP-SLAKLLALQYLDLEGTWIE-EVL 417 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~------~~~-~~~~l~~L~~L~l~~~~l~-~l~ 417 (607)
|..+..|+.++++++.++ .++..+...++|++++++++.... .++ .+..+++|+.|++++|.+. ..+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 445555666666666653 234444555566666666654431 111 3445566666666666554 233
Q ss_pred HhccCCC---CCCeeeccCCcCCcCCC----ccccCC-CCCCEEEcccCcchhh---hhHHHhhcccccccEEEeeecCc
Q 007339 418 ECMEMLE---NLSHLYLSSLQLKKFPT----GILPRL-RNLYKLKLSFGNEALR---ETVEEAASLSDGLDYFEGCFSKL 486 (607)
Q Consensus 418 ~~~~~l~---~L~~L~l~~~~l~~~~~----~~~~~l-~~L~~L~l~~~~~~~~---~~~~~l~~l~~~L~~L~l~~~~~ 486 (607)
..+..+. +|++|++++|.+..... ..+..+ ++|+.|++++|..... .....+..++ +|++|+++.|.+
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~L~~L~l~~n~l 177 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR-DLKELNLANNGI 177 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC-CcCEEECcCCCC
Confidence 3333333 36666666666542111 112344 5666666666654421 1123444555 666666666655
Q ss_pred ccc--ccccc-cccCCcceeEEEEeecch-hhhhhcccccccccccceeeeeeeccCCCCCc--cc----CCcccceeee
Q 007339 487 KDF--NRYVK-STDGRGSKNYCLVLSESW-MYYMFIRDLITDLEVDKSVRLFACKICEREEP--IV----LPEDVQYLEM 556 (607)
Q Consensus 487 ~~~--~~~~~-~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~----~~~~L~~L~l 556 (607)
... ..... ......|+.+.+..+.-. .........+..+++|+.|++++|.+.+.... .. ..+.|++|++
T Consensus 178 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 178 GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257 (319)
T ss_pred chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEc
Confidence 421 11100 011123555555422100 00011223344567777777777766531111 11 2357777777
Q ss_pred eeecCcccccCccccccccccccccccccceEEEeccc
Q 007339 557 IRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 557 ~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
++|. +++.. ...+...+ ..+++|+++++++|+
T Consensus 258 ~~n~-i~~~~-~~~l~~~~----~~~~~L~~l~l~~N~ 289 (319)
T cd00116 258 SCND-ITDDG-AKDLAEVL----AEKESLLELDLRGNK 289 (319)
T ss_pred cCCC-CCcHH-HHHHHHHH----hcCCCccEEECCCCC
Confidence 7773 21100 00011111 445677777777765
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.14 E-value=4.6e-09 Score=108.41 Aligned_cols=272 Identities=13% Similarity=0.127 Sum_probs=156.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccC-CCC-CcccccchHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQS-LPE-NEDKVRRPGRLLGM 81 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~-~~~~~~~~~~l~~~ 81 (607)
..+.+.|+|++|+|||++++.+++...... ..-.++++++....+...++..++.++... ... .....+....+.+.
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 346689999999999999999999876432 123478888887778889999999999752 211 11222334444444
Q ss_pred Hh-cCCcEEEEEecCCCcc------cccccccCCCCCC-CCcEEEEEeCchhhhh--------hcccceeecccCCHHHH
Q 007339 82 LK-AKEKFVLILDDMWEAF------PLQEIGIPEPSEE-NGCKLVITTRLYRVCR--------SMKCKQVAVELLSKQEA 145 (607)
Q Consensus 82 ~~-~~~~~LlVlDdv~~~~------~~~~l~~~~~~~~-~~~~IliTtR~~~~~~--------~~~~~~~~l~~L~~~ea 145 (607)
+. .++..+||||+++... .+..+...+.... ....+|.++....+.. ......+.+++++.++.
T Consensus 133 l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~ 212 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEI 212 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHH
Confidence 43 3567899999998764 1222221111111 1222555555433222 22233488999999999
Q ss_pred HHHhHhhhCCCCCCCccchHHHHHHHHHHc----CCchHHHHHHHHhh--c--CC---ccHHHHHHHHHHHHhccccCCC
Q 007339 146 FNLFIDGVGSSILQVPILNKEIINEVVEEC----GCLPLAIVTVAASM--S--GE---EEIYEWQNALNELRGRLRSLND 214 (607)
Q Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~PLal~~~a~~l--~--~~---~~~~~~~~~l~~l~~~~~~~~~ 214 (607)
.+++..++...... ....++.++.+++.+ |..+.|+.++-... . .. -+.+....+.....
T Consensus 213 ~~il~~r~~~~~~~-~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------- 283 (394)
T PRK00411 213 FDILKDRVEEGFYP-GVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE-------- 283 (394)
T ss_pred HHHHHHHHHhhccc-CCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH--------
Confidence 99999887432111 112455666666655 44667776664322 1 11 12344444444331
Q ss_pred CchhhhhhHHhhhcCCChhhHHHHHHHhhcCCC--CCccChHHHHHH--HHHhCCccccCCchhhHHHHHHHHHHHHHcc
Q 007339 215 VDTKVFGRLEFSYHRLKDEKLQQCFLYCAQYPE--DFAIPKDKLIDY--WIAEGFIDEVKDVPAKYDRGHTILNRLVNWC 290 (607)
Q Consensus 215 ~~~~~~~~~~~s~~~L~~~~~~~~~l~la~f~~--~~~i~~~~l~~~--w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~s 290 (607)
...+.-.+..|+ .+.+..+..++.... ...+....+... .+++.. ...+........++..|...|
T Consensus 284 -----~~~~~~~~~~L~-~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~----~~~~~~~~~~~~~l~~L~~~g 353 (394)
T PRK00411 284 -----IVHLSEVLRTLP-LHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL----GYEPRTHTRFYEYINKLDMLG 353 (394)
T ss_pred -----HHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc----CCCcCcHHHHHHHHHHHHhcC
Confidence 123445678898 666666655553321 123455554432 233221 111223345677899999999
Q ss_pred ccccc
Q 007339 291 LLESA 295 (607)
Q Consensus 291 ll~~~ 295 (607)
++...
T Consensus 354 lI~~~ 358 (394)
T PRK00411 354 IINTR 358 (394)
T ss_pred CeEEE
Confidence 99864
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=2.2e-12 Score=122.64 Aligned_cols=227 Identities=18% Similarity=0.127 Sum_probs=151.5
Q ss_pred CceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccC-CchhhhHH-hccCCCCCCeeec
Q 007339 356 GLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEG-TWIEEVLE-CMEMLENLSHLYL 431 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l 431 (607)
.-..++|..|.|+.+|. .|+.+++|+.|+|++|.+...-| .|.++..|..|-+.+ |+|+++|. .|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 56789999999999986 79999999999999999998888 899999987777766 89999997 5899999999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc------cccc----------cccc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK------DFNR----------YVKS 495 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~------~~~~----------~~~~ 495 (607)
.-|.+.-++...|..+++|..|.+..|....... ..+..+. .++.+.+.-|.+. -... +...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~-~tf~~l~-~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICK-GTFQGLA-AIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhcc-ccccchh-ccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 9999999998889999999999999875332211 3455666 6777766554411 0000 0000
Q ss_pred -------------ccCCc----ceeEEEEe-ecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeee
Q 007339 496 -------------TDGRG----SKNYCLVL-SESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEM 556 (607)
Q Consensus 496 -------------~~~~~----L~~l~l~~-~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l 556 (607)
....+ ++.+.-.. +..+........-|..+++|++|+|++|++.+...- +.-..++++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 00000 00000000 001111122233478899999999999998865433 566666777777
Q ss_pred eeecCcccccCccccccccccccccccccceEEEeccc
Q 007339 557 IRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 557 ~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
..|. +..+. . ..+ .++..|+.|++++++
T Consensus 306 ~~N~-l~~v~---~--~~f----~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 306 TRNK-LEFVS---S--GMF----QGLSGLKTLSLYDNQ 333 (498)
T ss_pred Ccch-HHHHH---H--Hhh----hccccceeeeecCCe
Confidence 7763 22211 1 111 456667777776654
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=4.8e-11 Score=131.54 Aligned_cols=113 Identities=33% Similarity=0.354 Sum_probs=87.2
Q ss_pred ccccchhhhcCCCCceEEEccCCC-CccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hhHHh
Q 007339 343 ERRIPECFFVHMNGLKVLNLSHTD-IEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EVLEC 419 (607)
Q Consensus 343 ~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~ 419 (607)
...++..+|..++.|++||+++|. +..+|.+++.+-+||||+++++.+. .+| .+.++..|.+||+..+.-. .+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccch
Confidence 455788889999999999999875 7799999999999999999998765 566 9999999999999998543 44445
Q ss_pred ccCCCCCCeeeccCCc--CCcCCCccccCCCCCCEEEcc
Q 007339 420 MEMLENLSHLYLSSLQ--LKKFPTGILPRLRNLYKLKLS 456 (607)
Q Consensus 420 ~~~l~~L~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~ 456 (607)
...+++|++|.+.... .+......+.++.+|+.+...
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 5569999999987654 222222334566666665554
No 30
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.07 E-value=2.8e-08 Score=101.44 Aligned_cols=274 Identities=14% Similarity=0.141 Sum_probs=153.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCC---CeEEEEEeCCCCCHHHHHHHHHHHHc---cCCCCC-cccccchH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKF---NDVIWVTVSQPLDLFKLQTEIATALK---QSLPEN-EDKVRRPG 76 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~~~-~~~~~~~~ 76 (607)
..+.+.|+|++|+|||++++.+++......... -.++|+++....+..+++..++.++. ...... .+..+...
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 118 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFR 118 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHH
Confidence 346799999999999999999998764321111 24788898887788899999999984 222111 11222334
Q ss_pred HHHHHHh-cCCcEEEEEecCCCcc-cccccccCCC------C-CCCCcEEEEEeCchhhhh--------hcccceeeccc
Q 007339 77 RLLGMLK-AKEKFVLILDDMWEAF-PLQEIGIPEP------S-EENGCKLVITTRLYRVCR--------SMKCKQVAVEL 139 (607)
Q Consensus 77 ~l~~~~~-~~~~~LlVlDdv~~~~-~~~~l~~~~~------~-~~~~~~IliTtR~~~~~~--------~~~~~~~~l~~ 139 (607)
.+.+.+. .++++++|||+++... ..+.+...+. . .+....+|.+|+...... ......+.+++
T Consensus 119 ~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p 198 (365)
T TIGR02928 119 RLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPP 198 (365)
T ss_pred HHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCC
Confidence 4444443 3678899999999882 1122111111 1 112234455554333221 12222388999
Q ss_pred CCHHHHHHHhHhhhCCC--CCCCccchHHHHHHHHHHcCCchH-HHHHHHHhh----c-C--CccHHHHHHHHHHHHhcc
Q 007339 140 LSKQEAFNLFIDGVGSS--ILQVPILNKEIINEVVEECGCLPL-AIVTVAASM----S-G--EEEIYEWQNALNELRGRL 209 (607)
Q Consensus 140 L~~~ea~~L~~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~PL-al~~~a~~l----~-~--~~~~~~~~~~l~~l~~~~ 209 (607)
.+.+|..+++..++... ...-.+..-+.+..++....|.|. |+.++-... . + .-+.+..+.+...+.
T Consensus 199 ~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~--- 275 (365)
T TIGR02928 199 YDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE--- 275 (365)
T ss_pred CCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---
Confidence 99999999999887422 111111122344556666678874 333332211 1 1 112333344343321
Q ss_pred ccCCCCchhhhhhHHhhhcCCChhhHHHHHHHhhcCC--CCCccChHHHHHHH--HHhCCccccCCchhhHHHHHHHHHH
Q 007339 210 RSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCAQYP--EDFAIPKDKLIDYW--IAEGFIDEVKDVPAKYDRGHTILNR 285 (607)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~l~la~f~--~~~~i~~~~l~~~w--~~~~~~~~~~~~~~~~~~~~~~l~~ 285 (607)
...+.-.+..|+ .+.+.++..++... +...+....+...+ +++.+ .-.+........++..
T Consensus 276 ----------~~~~~~~i~~l~-~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~~~~~~~~~~l~~ 340 (365)
T TIGR02928 276 ----------KDRLLELIRGLP-THSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDI----GVDPLTQRRISDLLNE 340 (365)
T ss_pred ----------HHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhc----CCCCCcHHHHHHHHHH
Confidence 123345667888 66666555554221 33345555555433 22211 1123445778889999
Q ss_pred HHHccccccc
Q 007339 286 LVNWCLLESA 295 (607)
Q Consensus 286 L~~~sll~~~ 295 (607)
|...|+++..
T Consensus 341 l~~~gli~~~ 350 (365)
T TIGR02928 341 LDMLGLVEAE 350 (365)
T ss_pred HHhcCCeEEE
Confidence 9999999975
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.7e-10 Score=101.90 Aligned_cols=130 Identities=25% Similarity=0.272 Sum_probs=54.6
Q ss_pred hcCCCCceEEEccCCCCccCCcccc-CCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhc-cCCCCCCe
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSIS-DLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECM-EMLENLSH 428 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~-~~l~~L~~ 428 (607)
+.+...++.|+|++|.|+.+. .++ .+.+|+.|++++|.+.. ++.+..+++|++|++++|.|+++.+.+ ..+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITK-LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcc-ccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 446678899999999999875 455 58899999999988664 557888999999999999999887655 46899999
Q ss_pred eeccCCcCCcCCC-ccccCCCCCCEEEcccCcchhhhhH--HHhhcccccccEEEeee
Q 007339 429 LYLSSLQLKKFPT-GILPRLRNLYKLKLSFGNEALRETV--EEAASLSDGLDYFEGCF 483 (607)
Q Consensus 429 L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~--~~l~~l~~~L~~L~l~~ 483 (607)
|++++|++..+.. ..+..+++|+.|++.+|........ .-+..+| +|+.||-..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP-~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP-SLKVLDGQD 149 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T-T-SEETTEE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC-hhheeCCEE
Confidence 9999998876543 3367899999999999876544332 4466788 888887643
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.05 E-value=6.4e-11 Score=118.76 Aligned_cols=136 Identities=24% Similarity=0.194 Sum_probs=81.5
Q ss_pred hcCCCCceEEEccCCCCc-cCCccccCC---ccCcEeecccccCCCC----CC-cccCC-CCCCEEeccCCchh-----h
Q 007339 351 FVHMNGLKVLNLSHTDIE-VLPSSISDL---TNLRSLLLRWCGRLKR----VP-SLAKL-LALQYLDLEGTWIE-----E 415 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~-~l~~~~~~l---~~L~~L~l~~~~~~~~----~~-~~~~l-~~L~~L~l~~~~l~-----~ 415 (607)
+..+++|+.|++++|.+. ..+..+..+ ++|++|++++|..... +. .+..+ ++|+.|++++|.++ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 556778888888877765 223333333 3478888877765521 11 34455 77788888877666 3
Q ss_pred hHHhccCCCCCCeeeccCCcCCcCC----CccccCCCCCCEEEcccCcchhhh---hHHHhhcccccccEEEeeecCcc
Q 007339 416 VLECMEMLENLSHLYLSSLQLKKFP----TGILPRLRNLYKLKLSFGNEALRE---TVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 416 l~~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
++..+..+++|+.|++++|.+++.. ...+..+++|+.|++++|...... ....+..++ +|+.|+++.|.+.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~-~L~~L~ls~n~l~ 234 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK-SLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC-CCCEEecCCCcCc
Confidence 3445566677788888777766311 111345567777887776543221 113445566 7777777776654
No 33
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.99 E-value=5.3e-09 Score=104.49 Aligned_cols=252 Identities=12% Similarity=0.107 Sum_probs=128.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC---CC-cc-cccchHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP---EN-ED-KVRRPGRL 78 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~-~~-~~~~~~~l 78 (607)
..+.+.|+|++|+|||++|+.+++..... ..++..... .....+..++..+..... .+ .. .......+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~------~~~~~~~~~-~~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l 122 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVN------IRITSGPAL-EKPGDLAAILTNLEEGDVLFIDEIHRLSPVVEEIL 122 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCC------eEEEecccc-cChHHHHHHHHhcccCCEEEEecHhhcchHHHHHH
Confidence 35678999999999999999999997521 222322211 111222223322221100 00 00 00001111
Q ss_pred HHHHhcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhhc--cc-ceeecccCCHHHHHHHhHhhhCC
Q 007339 79 LGMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRSM--KC-KQVAVELLSKQEAFNLFIDGVGS 155 (607)
Q Consensus 79 ~~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~--~~-~~~~l~~L~~~ea~~L~~~~~~~ 155 (607)
...+ .+.+..+|+|+..+...+. ..++ +.+-|..|++...+.... +. ..+++++++.++..+++.+.++.
T Consensus 123 ~~~~-e~~~~~~~l~~~~~~~~~~---~~l~---~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 123 YPAM-EDFRLDIMIGKGPAARSIR---LDLP---PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI 195 (328)
T ss_pred HHHH-HhcceeeeeccCcccccee---ecCC---CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 1111 2333444444433322211 1111 234566666644333221 12 23799999999999999999877
Q ss_pred CCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhccccCCCCchhhhhhHHhhhcCCChhhH
Q 007339 156 SILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKL 235 (607)
Q Consensus 156 ~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~ 235 (607)
....- .++.+..|++.|+|.|-.+..+...+. .|.... ..... ....-......+...+..|+ +..
T Consensus 196 ~~~~~---~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~~I-~~~~v~~~l~~~~~~~~~l~-~~~ 261 (328)
T PRK00080 196 LGVEI---DEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDGVI-TKEIADKALDMLGVDELGLD-EMD 261 (328)
T ss_pred cCCCc---CHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCCCC-CHHHHHHHHHHhCCCcCCCC-HHH
Confidence 64444 678899999999999965444433221 111000 00000 00001233344566677888 555
Q ss_pred HHHHH-HhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHH-HHHHcccccccC
Q 007339 236 QQCFL-YCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILN-RLVNWCLLESAE 296 (607)
Q Consensus 236 ~~~~l-~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~-~L~~~sll~~~~ 296 (607)
+..+. ....|..+ .+..+.+.... ....+..+..++ .|++.+|++...
T Consensus 262 ~~~l~~~~~~~~~~-~~~~~~~a~~l------------g~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 262 RKYLRTIIEKFGGG-PVGLDTLAAAL------------GEERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHHHHHHHHHcCCC-ceeHHHHHHHH------------CCCcchHHHHhhHHHHHcCCcccCC
Confidence 66665 55566655 35555543222 111234455677 899999998544
No 34
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.98 E-value=1.8e-09 Score=102.94 Aligned_cols=176 Identities=23% Similarity=0.326 Sum_probs=93.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHH---------HHHHHHccCCC--------
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQT---------EIATALKQSLP-------- 66 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~---------~i~~~l~~~~~-------- 66 (607)
..+.+.|+|+.|+|||+|++++.+..+.. .+ .++|+............. .+.+.+.....
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~--~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 95 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEK--GY-KVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKIS 95 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEE
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhc--CC-cEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 35789999999999999999999997422 12 355555444332221111 12222322111
Q ss_pred --CCcccccchHHHHHHHh-cCCcEEEEEecCCCcc-ccc---c----cccCCCC--CCCCcEEEEEeCchhhhhh----
Q 007339 67 --ENEDKVRRPGRLLGMLK-AKEKFVLILDDMWEAF-PLQ---E----IGIPEPS--EENGCKLVITTRLYRVCRS---- 129 (607)
Q Consensus 67 --~~~~~~~~~~~l~~~~~-~~~~~LlVlDdv~~~~-~~~---~----l~~~~~~--~~~~~~IliTtR~~~~~~~---- 129 (607)
...........+.+.+. .++++++|+|+++... ... . +...+.. ......+++++....+...
T Consensus 96 ~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~ 175 (234)
T PF01637_consen 96 KDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDD 175 (234)
T ss_dssp CTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-T
T ss_pred hcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcc
Confidence 11222344555555554 3456999999998877 211 1 1111111 1223334455544444432
Q ss_pred -----cccceeecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 007339 130 -----MKCKQVAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVT 184 (607)
Q Consensus 130 -----~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 184 (607)
.....+.+++|+.+++++++...+... ..- +..++..++|++.+||+|..|..
T Consensus 176 ~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 176 KSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred cCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 112228999999999999999876544 111 12567889999999999998864
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=1.4e-10 Score=102.33 Aligned_cols=123 Identities=25% Similarity=0.209 Sum_probs=46.2
Q ss_pred ccCCCCccCCccccCCccCcEeecccccCCCCCCccc-CCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCC
Q 007339 362 LSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLA-KLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFP 440 (607)
Q Consensus 362 l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~ 440 (607)
+..+.|+..+. +.+...++.|+|++|.+... ..++ .+.+|+.|++++|.|+.+. ++..+++|+.|++++|.++.+.
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS 80 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C
T ss_pred ccccccccccc-cccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc
Confidence 44555666653 45666789999999886653 3454 6789999999999998874 6778999999999999999886
Q ss_pred CccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc
Q 007339 441 TGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 441 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
......+++|++|++++|.+.....+..+..++ +|+.|++..|++..
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~-~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLP-KLRVLSLEGNPVCE 127 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-T-T--EEE-TT-GGGG
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCC-CcceeeccCCcccc
Confidence 544346899999999999877777778888899 99999999888753
No 36
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.98 E-value=3.9e-10 Score=109.35 Aligned_cols=293 Identities=19% Similarity=0.168 Sum_probs=191.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..|.+.++|+|||||||++-++.. .. ..+-+.+.++++....+...+.-.+...++.+........ ..+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~---~~~~~~~- 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAV---DTLVRRI- 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccchHHH---HHHHHHH-
Confidence 457899999999999999999998 33 1334458888888888888888888888888765433322 2233333
Q ss_pred cCCcEEEEEecCCCccc-ccccccCCCCCCCCcEEEEEeCchhhhhhcccceeecccCCHH-HHHHHhHhhhCCC-----
Q 007339 84 AKEKFVLILDDMWEAFP-LQEIGIPEPSEENGCKLVITTRLYRVCRSMKCKQVAVELLSKQ-EAFNLFIDGVGSS----- 156 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~-~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~~~~~~l~~L~~~-ea~~L~~~~~~~~----- 156 (607)
..++.++|+||..+..+ ...+.-.+......-.|+.|+|....... ..+..+..|+.. ++.++|..++...
T Consensus 86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~g--e~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~ 163 (414)
T COG3903 86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAG--EVHRRVPSLSLFDEAIELFVCRAVLVALSFW 163 (414)
T ss_pred hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccc--cccccCCccccCCchhHHHHHHHHHhcccee
Confidence 57899999999987733 22222223334456678999995433322 122667777744 7899988766333
Q ss_pred CCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCcc---HHHHHHHHHHHHhccccCCCCchhhhhhHHhhhcCCChh
Q 007339 157 ILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEE---IYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDE 233 (607)
Q Consensus 157 ~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~s~~~L~~~ 233 (607)
.... .......|++..+|+|++|..+++..+.-.. .....+-++.+.+........+......+.+||.-|. .
T Consensus 164 l~~~---~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt-g 239 (414)
T COG3903 164 LTDD---NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT-G 239 (414)
T ss_pred ecCC---chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh-h
Confidence 2222 6678899999999999999999998876322 2223333333433322222333467788999999999 7
Q ss_pred hHHHHHHHhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHHHHHHcccccccCC--CCeEEecHHHHHHH
Q 007339 234 KLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLESAED--DSCVKMHDLIRDMA 311 (607)
Q Consensus 234 ~~~~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~--~~~~~~H~lv~~~~ 311 (607)
..+..|..++.|...+... ...|...+-... .........+..+++.+++...+. ...|+.-+-++.|+
T Consensus 240 we~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Ya 310 (414)
T COG3903 240 WERALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYA 310 (414)
T ss_pred HHHHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHH
Confidence 7899999999998776443 222333221110 112234455777888888877543 35677777777777
Q ss_pred HHHhcCC
Q 007339 312 LRITSKS 318 (607)
Q Consensus 312 ~~~~~~~ 318 (607)
..+..+.
T Consensus 311 laeL~r~ 317 (414)
T COG3903 311 LAELHRS 317 (414)
T ss_pred HHHHHhh
Confidence 7777654
No 37
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.97 E-value=6.5e-09 Score=103.20 Aligned_cols=251 Identities=15% Similarity=0.131 Sum_probs=126.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----C-CcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP----E-NEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~-~~~~~~~~~~l~ 79 (607)
.+.+.|+|++|+|||+||+.+++.... . ...+..........+ ...+..++.... + +.-.......++
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~---~---~~~~~~~~~~~~~~l-~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~ 102 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGV---N---LKITSGPALEKPGDL-AAILTNLEEGDVLFIDEIHRLSPAVEELLY 102 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC---C---EEEeccchhcCchhH-HHHHHhcccCCEEEEehHhhhCHHHHHHhh
Confidence 456899999999999999999998752 1 222222111111222 122222221100 0 000000111122
Q ss_pred HHHhcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhhc--ccc-eeecccCCHHHHHHHhHhhhCCC
Q 007339 80 GMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRSM--KCK-QVAVELLSKQEAFNLFIDGVGSS 156 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~--~~~-~~~l~~L~~~ea~~L~~~~~~~~ 156 (607)
..+ .+.+..+|+|+..+...+. ...+ +.+-|..||+...+.... +.. .+.+++++.+|..+++.+.++..
T Consensus 103 ~~~-~~~~~~~v~~~~~~~~~~~---~~~~---~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~ 175 (305)
T TIGR00635 103 PAM-EDFRLDIVIGKGPSARSVR---LDLP---PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLL 175 (305)
T ss_pred HHH-hhhheeeeeccCcccccee---ecCC---CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh
Confidence 222 3334445555544333322 1111 244566677754333221 122 27899999999999999988755
Q ss_pred CCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhccccCCCCchhhhhhHHhhhcCCChhhHH
Q 007339 157 ILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQ 236 (607)
Q Consensus 157 ~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~ 236 (607)
...- .++.++.|++.|+|.|..+..+...+. ... ......... .+.-......+...|..++ +..+
T Consensus 176 ~~~~---~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a-~~~~~~~it-~~~v~~~l~~l~~~~~~l~-~~~~ 241 (305)
T TIGR00635 176 NVEI---EPEAALEIARRSRGTPRIANRLLRRVR--------DFA-QVRGQKIIN-RDIALKALEMLMIDELGLD-EIDR 241 (305)
T ss_pred CCCc---CHHHHHHHHHHhCCCcchHHHHHHHHH--------HHH-HHcCCCCcC-HHHHHHHHHHhCCCCCCCC-HHHH
Confidence 3333 678889999999999976554443221 000 000000000 0000112222455678888 6666
Q ss_pred HHHHHh-hcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHH-HHHHcccccccC
Q 007339 237 QCFLYC-AQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILN-RLVNWCLLESAE 296 (607)
Q Consensus 237 ~~~l~l-a~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~-~L~~~sll~~~~ 296 (607)
..+..+ +.+..+ .++...+.... | ......+..++ .|++.+|++...
T Consensus 242 ~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 242 KLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred HHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHcCCcccCC
Confidence 666634 555433 34444433221 1 11234556677 699999997543
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.8e-11 Score=108.96 Aligned_cols=184 Identities=17% Similarity=0.104 Sum_probs=122.6
Q ss_pred CCCEEeccCCchh--hhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhH-HHhhcccccccE
Q 007339 402 ALQYLDLEGTWIE--EVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETV-EEAASLSDGLDY 478 (607)
Q Consensus 402 ~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~~L~~ 478 (607)
.|++|||++..|+ .+-..+..|.+|+.|.|.++.+..-....+++-.+|+.|+++.++......+ --+..+. .|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs-~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS-RLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh-hHhh
Confidence 4777788877666 4545567788888888888887765555567888888888888765544444 3356677 8888
Q ss_pred EEeeecCccccc-cccccccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc--ccCCcccceee
Q 007339 479 FEGCFSKLKDFN-RYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP--IVLPEDVQYLE 555 (607)
Q Consensus 479 L~l~~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~ 555 (607)
|+++||.+..-. ..+-......|+.|.+.....+....-.......+|+|..|+|++|.......+ +..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 888888765421 111122234477777764433332221222335789999999999976555444 67789999999
Q ss_pred eeeecCcccccCccccccccccccccccccceEEEecccc
Q 007339 556 MIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHN 595 (607)
Q Consensus 556 l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 595 (607)
++.|..+.--. +..+ +..|.|.+|++.+|-.
T Consensus 345 lsRCY~i~p~~-~~~l--------~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYDIIPET-LLEL--------NSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcCCChHH-eeee--------ccCcceEEEEeccccC
Confidence 99998442111 2222 7789999999999864
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=1.9e-10 Score=105.66 Aligned_cols=136 Identities=26% Similarity=0.276 Sum_probs=116.4
Q ss_pred CCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 353 HMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
.+..|+.+|+++|.|+.+-.++.-.+.++.|++++|.+.. +.++..+++|+.||||+|.++++--.--++-|.+.|.|+
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4567899999999999998888999999999999998654 346899999999999999888775444467788999999
Q ss_pred CCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccc
Q 007339 433 SLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRY 492 (607)
Q Consensus 433 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~ 492 (607)
+|.+..+.- +.++-+|..||+++|++.....+..++++| -|+.+.+.+|++...+++
T Consensus 361 ~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP-CLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 361 QNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLP-CLETLRLTGNPLAGSVDY 417 (490)
T ss_pred hhhHhhhhh--hHhhhhheeccccccchhhHHHhccccccc-HHHHHhhcCCCccccchH
Confidence 998877643 589999999999999988888889999999 999999999998765543
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=3.4e-10 Score=109.45 Aligned_cols=186 Identities=16% Similarity=0.092 Sum_probs=123.5
Q ss_pred hcCCCCceEEEccCCCCcc---CCccccCCccCcEeecccccCCCCCC--cccCCCCCCEEeccCCchh--hhHHhccCC
Q 007339 351 FVHMNGLKVLNLSHTDIEV---LPSSISDLTNLRSLLLRWCGRLKRVP--SLAKLLALQYLDLEGTWIE--EVLECMEML 423 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~--~l~~~~~~l 423 (607)
...|++++.|+|+.|-+.. +-.....+++|+.|+++.|.+..... .-..+++|+.|.|+.|.++ ++......+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 4478999999999987652 22345678999999999887765443 3447788999999999877 454556678
Q ss_pred CCCCeeeccCCc-CCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcce
Q 007339 424 ENLSHLYLSSLQ-LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSK 502 (607)
Q Consensus 424 ~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 502 (607)
++|+.|+|.+|. +...... ...+..|+.|+|++|+.......-..+.++ .|+.|+++.+++.++...-...
T Consensus 222 Psl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~Lnls~tgi~si~~~d~~s------ 293 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQLNLSSTGIASIAEPDVES------ 293 (505)
T ss_pred CcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccccccccccc-chhhhhccccCcchhcCCCccc------
Confidence 999999999984 2222222 256788899999998876665555567788 8888888888776544321100
Q ss_pred eEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc--ccCCcccceeeeeeec
Q 007339 503 NYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP--IVLPEDVQYLEMIRVD 560 (607)
Q Consensus 503 ~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 560 (607)
. +.-..+++|++|++..|++...... +..+++|+.|.+..++
T Consensus 294 ------~----------~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 294 ------L----------DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ------h----------hhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 0 0011236677777777776544433 4455566666655554
No 41
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.86 E-value=1.3e-07 Score=91.38 Aligned_cols=201 Identities=18% Similarity=0.158 Sum_probs=114.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
+.+....+|||+|+||||||+.++.... .. |..++...+-..-++.+++... +..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~---~~-----f~~~sAv~~gvkdlr~i~e~a~-----------------~~~ 100 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTN---AA-----FEALSAVTSGVKDLREIIEEAR-----------------KNR 100 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhC---Cc-----eEEeccccccHHHHHHHHHHHH-----------------HHH
Confidence 4566778999999999999999999875 22 2333332222222223322221 122
Q ss_pred hcCCcEEEEEecCCCc--ccccccccCCCCCCCCcEEEE--EeCchhhh----hhcccceeecccCCHHHHHHHhHhhhC
Q 007339 83 KAKEKFVLILDDMWEA--FPLQEIGIPEPSEENGCKLVI--TTRLYRVC----RSMKCKQVAVELLSKQEAFNLFIDGVG 154 (607)
Q Consensus 83 ~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~Ili--TtR~~~~~----~~~~~~~~~l~~L~~~ea~~L~~~~~~ 154 (607)
..|++.+|++|.|... .+-+.+.+.. ..|..|+| ||-++... -..++..+++++|+.+|..+++.+.+.
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 2588999999999866 3334443333 45666666 44443332 112344489999999999999998542
Q ss_pred CC--CCC--CccchHHHHHHHHHHcCCchHHH----HHHHHhhcCCc--cHHHHHHHHHHHHhccccCCCCchhhhhhHH
Q 007339 155 SS--ILQ--VPILNKEIINEVVEECGCLPLAI----VTVAASMSGEE--EIYEWQNALNELRGRLRSLNDVDTKVFGRLE 224 (607)
Q Consensus 155 ~~--~~~--~~~~~~~~~~~i~~~~~g~PLal----~~~a~~l~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 224 (607)
.. ... .....++..+.+++.++|-..+. ++++..-+... ..+..++.+.+-....+.-.+.+=.+..++.
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~h 257 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALH 257 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHH
Confidence 22 111 11125678889999999986432 22233322221 2344444444433333322333445667777
Q ss_pred hhhcCCC
Q 007339 225 FSYHRLK 231 (607)
Q Consensus 225 ~s~~~L~ 231 (607)
-|...=+
T Consensus 258 KSvRGSD 264 (436)
T COG2256 258 KSVRGSD 264 (436)
T ss_pred HhhccCC
Confidence 7776665
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.1e-09 Score=105.99 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=36.6
Q ss_pred ccccccceeeeeeeccCCCCCc-------ccCCcccceeeeeeecCcccccCccccccccccccccccccceEEE
Q 007339 523 TDLEVDKSVRLFACKICEREEP-------IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRF 590 (607)
Q Consensus 523 ~~l~~L~~L~L~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l 590 (607)
..||.|+.|.++.|.+.....+ ...+++|++|++..|+ +.+++.+... ..+++|+.|.+
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l--------~~l~nlk~l~~ 333 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHL--------RTLENLKHLRI 333 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchh--------hccchhhhhhc
Confidence 3457777788888777644332 3567889999999885 3334433333 45566666553
No 43
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.84 E-value=4.6e-09 Score=90.01 Aligned_cols=119 Identities=20% Similarity=0.239 Sum_probs=81.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCC--CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKP--NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLG 80 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (607)
.+.+++.|+|++|+|||++++++++...... ..-..++|+++....+...+...+++.++.+.............+.+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 3567899999999999999999999874210 00234889999887799999999999999877664455556677777
Q ss_pred HHhcCCcEEEEEecCCCc-c--cccccccCCCCCCCCcEEEEEeCc
Q 007339 81 MLKAKEKFVLILDDMWEA-F--PLQEIGIPEPSEENGCKLVITTRL 123 (607)
Q Consensus 81 ~~~~~~~~LlVlDdv~~~-~--~~~~l~~~~~~~~~~~~IliTtR~ 123 (607)
.+.+.+..+||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 776677789999999887 3 1222222222 556678877774
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.80 E-value=2.7e-08 Score=93.71 Aligned_cols=152 Identities=13% Similarity=0.173 Sum_probs=96.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.+.|||++|+|||.|+..+++....+ ...+.|+++.... .... .+.+.+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~~---~~~~---------------------~~~~~~-- 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKSQ---YFSP---------------------AVLENL-- 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHhh---hhhH---------------------HHHhhc--
Confidence 4578999999999999999999987532 2346777764210 0000 111122
Q ss_pred CCcEEEEEecCCCcc---ccc-ccccCCCCC-CCCcEEE-EEeCc---------hhhhhhcccce-eecccCCHHHHHHH
Q 007339 85 KEKFVLILDDMWEAF---PLQ-EIGIPEPSE-ENGCKLV-ITTRL---------YRVCRSMKCKQ-VAVELLSKQEAFNL 148 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~---~~~-~l~~~~~~~-~~~~~Il-iTtR~---------~~~~~~~~~~~-~~l~~L~~~ea~~L 148 (607)
.+.-+||+||++... .|+ .+...+... ..+..++ +|++. +.+..++.+.. ++++++++++.+++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV 169 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence 123599999998752 233 222222211 2244554 45543 34445555444 89999999999999
Q ss_pred hHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHh
Q 007339 149 FIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAAS 188 (607)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~ 188 (607)
+.+.+......- .+++.+.|++.+.|..-.+..+-..
T Consensus 170 L~~~a~~~~l~l---~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 170 LQRNAYQRGIEL---SDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 998886554333 6788999999999887766555443
No 45
>PF13173 AAA_14: AAA domain
Probab=98.78 E-value=1.4e-08 Score=86.33 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+++.|.|+-|+||||++++++.+.. ....++++++...........+ ....+.+. ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~-~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD-----------------LLEYFLEL-IK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHh-hc
Confidence 47899999999999999999998874 2345888887764331110000 11112222 13
Q ss_pred CCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhh-----cccce--eecccCCHHH
Q 007339 85 KEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRS-----MKCKQ--VAVELLSKQE 144 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~-----~~~~~--~~l~~L~~~e 144 (607)
+++.+++||+++....|......+.......+|++|+........ ..... ++|.+|+-.|
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 467899999999998888777776665567899999997666532 11222 7888888766
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.77 E-value=2.8e-10 Score=113.50 Aligned_cols=191 Identities=17% Similarity=0.144 Sum_probs=112.8
Q ss_pred ceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcC
Q 007339 357 LKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQL 436 (607)
Q Consensus 357 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l 436 (607)
-...+++.|.+..+|..+..+..|+.+.|..|.+....+.+.++..|.+|||+.|.++.+|..+..|+ |+.|-+++|++
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc
Confidence 34456666666666666666666666666666555444466666666677777666666666665555 66666666666
Q ss_pred CcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchhhhh
Q 007339 437 KKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWMYYM 516 (607)
Q Consensus 437 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 516 (607)
+.+|.++ +.+..|..|+.+.|.. ...+..++.+. +|+.|.+.-|++..++..+. ...|..|+++.+. . .
T Consensus 156 ~~lp~~i-g~~~tl~~ld~s~nei--~slpsql~~l~-slr~l~vrRn~l~~lp~El~---~LpLi~lDfScNk--i--s 224 (722)
T KOG0532|consen 156 TSLPEEI-GLLPTLAHLDVSKNEI--QSLPSQLGYLT-SLRDLNVRRNHLEDLPEELC---SLPLIRLDFSCNK--I--S 224 (722)
T ss_pred ccCCccc-ccchhHHHhhhhhhhh--hhchHHhhhHH-HHHHHHHhhhhhhhCCHHHh---CCceeeeecccCc--e--e
Confidence 6666665 5666666666666542 22334566666 66666666666665555444 1233444433211 1 1
Q ss_pred hcccccccccccceeeeeeeccCCCCCc---ccCCcccceeeeeee
Q 007339 517 FIRDLITDLEVDKSVRLFACKICEREEP---IVLPEDVQYLEMIRV 559 (607)
Q Consensus 517 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~l~~~ 559 (607)
.++..|.+|..|++|-|.+|.+...+.. .+...=.+.|++.-|
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 2345566778888888888887643321 122223455666666
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.76 E-value=5.9e-09 Score=107.73 Aligned_cols=174 Identities=24% Similarity=0.260 Sum_probs=109.4
Q ss_pred CCCCceEEEccCCCCccCCccccCCc-cCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeec
Q 007339 353 HMNGLKVLNLSHTDIEVLPSSISDLT-NLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYL 431 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l 431 (607)
.++.+..|++.+|.+..++.....+. +|+.|++++|.+......+..+++|+.|++++|+++.+|...+.+++|+.|++
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 44667777777777777776666664 77777777776554333677777777777777777777776667777777777
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSES 511 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 511 (607)
++|.+..+|..+ ..+..|++|.+++|... ..+..+..+. ++..+.+..+.+...
T Consensus 194 s~N~i~~l~~~~-~~~~~L~~l~~~~N~~~--~~~~~~~~~~-~l~~l~l~~n~~~~~---------------------- 247 (394)
T COG4886 194 SGNKISDLPPEI-ELLSALEELDLSNNSII--ELLSSLSNLK-NLSGLELSNNKLEDL---------------------- 247 (394)
T ss_pred cCCccccCchhh-hhhhhhhhhhhcCCcce--ecchhhhhcc-cccccccCCceeeec----------------------
Confidence 777777777653 45556777777766311 1223344555 555555544444322
Q ss_pred hhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeec
Q 007339 512 WMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 512 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (607)
...+..+++++.|++++|.+..... +....+|+.|+++++.
T Consensus 248 -------~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 248 -------PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred -------cchhccccccceecccccccccccc-ccccCccCEEeccCcc
Confidence 1233344556666666666655444 4555666666666654
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=4.1e-07 Score=96.30 Aligned_cols=158 Identities=12% Similarity=0.121 Sum_probs=98.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCC------------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKP------------------NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP 66 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 66 (607)
.+.+.++|+.|+||||+|+.+++.+-... +.|..+++++......++++
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdI------------- 104 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEM------------- 104 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHH-------------
Confidence 35678999999999999999988774210 01112333333222222221
Q ss_pred CCcccccchHHHHHHHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCchh-hhhhc--ccceeec
Q 007339 67 ENEDKVRRPGRLLGMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLYR-VCRSM--KCKQVAV 137 (607)
Q Consensus 67 ~~~~~~~~~~~l~~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~~-~~~~~--~~~~~~l 137 (607)
..+++... .++..++|||+++.+.. +..++..+..-....++|++|++.. +.... ++..+++
T Consensus 105 ---------ReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~F 175 (830)
T PRK07003 105 ---------AALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNL 175 (830)
T ss_pred ---------HHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEec
Confidence 22222211 35667999999998843 4555544433334566666666433 32222 2333999
Q ss_pred ccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch-HHHHHHHH
Q 007339 138 ELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP-LAIVTVAA 187 (607)
Q Consensus 138 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~a~ 187 (607)
+.++.++..+.+.++++.....- .++.++.|++.++|.. .++.++-+
T Consensus 176 k~Ls~eeIv~~L~~Il~~EgI~i---d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 176 KQMPAGHIVSHLERILGEERIAF---EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred CCcCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999987664443 6788999999998864 56665433
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.74 E-value=3.9e-08 Score=93.04 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=95.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.|.|+|++|+|||++|+.+++..... ....+++++...... ... +...+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~~~~i~~~~~~~~---~~~---------------------~~~~~- 88 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER---GKSAIYLPLAELAQA---DPE---------------------VLEGL- 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEeHHHHHHh---HHH---------------------HHhhc-
Confidence 45679999999999999999999886532 234667766543210 001 11111
Q ss_pred cCCcEEEEEecCCCccc----ccccccCCCC-CCCCcEEEEEeCchh---------hhhhcc-cceeecccCCHHHHHHH
Q 007339 84 AKEKFVLILDDMWEAFP----LQEIGIPEPS-EENGCKLVITTRLYR---------VCRSMK-CKQVAVELLSKQEAFNL 148 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~----~~~l~~~~~~-~~~~~~IliTtR~~~---------~~~~~~-~~~~~l~~L~~~ea~~L 148 (607)
.+.-+|||||++.... .+.+...+.. ...+..+|+||+... +...+. ...+++.+++++|...+
T Consensus 89 -~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~ 167 (226)
T TIGR03420 89 -EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAA 167 (226)
T ss_pred -ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHH
Confidence 1234899999987642 2223222211 122347888888432 122222 22389999999999999
Q ss_pred hHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHh
Q 007339 149 FIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAAS 188 (607)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~ 188 (607)
+.+.+......- .++..+.|++.+.|.|..+..+...
T Consensus 168 l~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 168 LQSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 987654332222 5678899999999999877666443
No 50
>PRK09087 hypothetical protein; Validated
Probab=98.72 E-value=1.2e-07 Score=88.65 Aligned_cols=142 Identities=16% Similarity=0.139 Sum_probs=91.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.+.|+|++|+|||+|++.++.... ..|++.. .+...+...+. +
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~------~~~~~~~~~~~---------------------~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPN------EIGSDAANAAA---------------------E 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHH------HcchHHHHhhh---------------------c
Confidence 45799999999999999999987743 2345432 11111111111 1
Q ss_pred CCcEEEEEecCCCcc-cccccccCCCC-CCCCcEEEEEeCc---------hhhhhhcccce-eecccCCHHHHHHHhHhh
Q 007339 85 KEKFVLILDDMWEAF-PLQEIGIPEPS-EENGCKLVITTRL---------YRVCRSMKCKQ-VAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~-~~~~l~~~~~~-~~~~~~IliTtR~---------~~~~~~~~~~~-~~l~~L~~~ea~~L~~~~ 152 (607)
-+|++||++... +-+++...+.. ...|..||+|++. +.+..++.+.. +++++++.++-.+++.+.
T Consensus 89 ---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 ---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred ---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 278889997542 11223322221 1235679998873 22233334444 899999999999999999
Q ss_pred hCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 007339 153 VGSSILQVPILNKEIINEVVEECGCLPLAIVTVAA 187 (607)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~ 187 (607)
+......- .+++.+.|++.+.|..-++..+..
T Consensus 166 ~~~~~~~l---~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 166 FADRQLYV---DPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHcCCCC---CHHHHHHHHHHhhhhHHHHHHHHH
Confidence 86653333 678999999999988877765443
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.69 E-value=1.8e-08 Score=104.11 Aligned_cols=199 Identities=23% Similarity=0.203 Sum_probs=129.8
Q ss_pred EEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCC-CCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCC
Q 007339 359 VLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLL-ALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLK 437 (607)
Q Consensus 359 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~ 437 (607)
.+.+..+.+..-...+..+..++.|++.++......+....+. +|+.|++++|.+..+|..++.+++|+.|+++.|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 4666666653333334555677777887776655555566664 788888888888777777778888888888888887
Q ss_pred cCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchhhhhh
Q 007339 438 KFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWMYYMF 517 (607)
Q Consensus 438 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 517 (607)
.+++.. +.+++|+.|++++|+...... ....+. .|+++.++.|....
T Consensus 177 ~l~~~~-~~~~~L~~L~ls~N~i~~l~~--~~~~~~-~L~~l~~~~N~~~~----------------------------- 223 (394)
T COG4886 177 DLPKLL-SNLSNLNNLDLSGNKISDLPP--EIELLS-ALEELDLSNNSIIE----------------------------- 223 (394)
T ss_pred hhhhhh-hhhhhhhheeccCCccccCch--hhhhhh-hhhhhhhcCCccee-----------------------------
Confidence 777643 367777777777765433222 112333 46666666664111
Q ss_pred cccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEecccchh
Q 007339 518 IRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLK 597 (607)
Q Consensus 518 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~ 597 (607)
....+..+.++..+.+.++.+.........+++++.|++++|. +++++ .+ ..+.+|+.|++++..-..
T Consensus 224 ~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~---~~--------~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 224 LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSIS---SL--------GSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cchhhhhcccccccccCCceeeeccchhccccccceecccccc-ccccc---cc--------cccCccCEEeccCccccc
Confidence 1122334466777778888776545557778889999999984 33333 23 778999999999877665
Q ss_pred hhhhc
Q 007339 598 NLFSL 602 (607)
Q Consensus 598 ~lp~~ 602 (607)
.+|..
T Consensus 292 ~~~~~ 296 (394)
T COG4886 292 ALPLI 296 (394)
T ss_pred cchhh
Confidence 55543
No 52
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.68 E-value=2.1e-06 Score=91.66 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=104.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCC--CCCC--eEEEEEeCCCCCHHHHHHHHHHHHccCCCCCc-ccccchHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKP--NKFN--DVIWVTVSQPLDLFKLQTEIATALKQSLPENE-DKVRRPGRLLG 80 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~--~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~ 80 (607)
.++.|+|++|.|||+.++.++..++... .... .+++|++....+...++..|.+++........ ........+..
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 5678999999999999999988774321 1111 37888988878889999999999954332211 12223334444
Q ss_pred HHhc--CCcEEEEEecCCCccc-ccc-cccCCCC-CCCCcEEEE--EeCc--------hhhhhhcccceeecccCCHHHH
Q 007339 81 MLKA--KEKFVLILDDMWEAFP-LQE-IGIPEPS-EENGCKLVI--TTRL--------YRVCRSMKCKQVAVELLSKQEA 145 (607)
Q Consensus 81 ~~~~--~~~~LlVlDdv~~~~~-~~~-l~~~~~~-~~~~~~Ili--TtR~--------~~~~~~~~~~~~~l~~L~~~ea 145 (607)
.+.. +...+||||+++.... -+. +...+.+ ...+++|+| +|.+ +.+..++....+..++.+.+|.
T Consensus 862 ~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL 941 (1164)
T PTZ00112 862 QNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEI 941 (1164)
T ss_pred hhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHH
Confidence 3321 2346999999987742 111 1111111 112344443 3332 2222233333367799999999
Q ss_pred HHHhHhhhCCCCCCCccchHHHHHHHHH---HcCCc-hHHHHHHHH
Q 007339 146 FNLFIDGVGSSILQVPILNKEIINEVVE---ECGCL-PLAIVTVAA 187 (607)
Q Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~---~~~g~-PLal~~~a~ 187 (607)
.+++..++..... ...+++.+.+++ ..+|- -.||.++-.
T Consensus 942 ~dILk~RAe~A~g---VLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 942 EKIIKERLENCKE---IIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred HHHHHHHHHhCCC---CCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 9999999865311 124455555555 33343 455555543
No 53
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.66 E-value=7.9e-07 Score=91.69 Aligned_cols=156 Identities=14% Similarity=0.161 Sum_probs=90.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.+.|+|++|+||||+|+.+++... ..| ..++.... ... ..+.+..... ....
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~---~~~---~~l~a~~~-~~~-~ir~ii~~~~-----------------~~~~ 89 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATD---APF---EALSAVTS-GVK-DLREVIEEAR-----------------QRRS 89 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---CCE---EEEecccc-cHH-HHHHHHHHHH-----------------Hhhh
Confidence 445788999999999999999998864 222 22222211 111 1122222211 1112
Q ss_pred cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEE--eCchhh--hhh--cccceeecccCCHHHHHHHhHhhhCC
Q 007339 84 AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVIT--TRLYRV--CRS--MKCKQVAVELLSKQEAFNLFIDGVGS 155 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliT--tR~~~~--~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~ 155 (607)
.+++.++++|+++... +.+.+...+. .+..++|. |.+... ... -+...+.+.+++.++...++.+.+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 4578999999998773 3333333333 24444443 333221 111 12233899999999999999987643
Q ss_pred CCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 007339 156 SILQVPILNKEIINEVVEECGCLPLAIVTVAA 187 (607)
Q Consensus 156 ~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~ 187 (607)
.........++..+.|++.++|.+..+..+..
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 21100022577889999999999876654443
No 54
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.5e-05 Score=79.84 Aligned_cols=264 Identities=15% Similarity=0.168 Sum_probs=152.0
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh-cCC
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK-AKE 86 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~-~~~ 86 (607)
+.|+|++|+|||+.++.+++.........+ +++|+|....+..+++..|++.++.....+....+....+.+.+. .++
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~ 123 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGK 123 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCC
Confidence 899999999999999999999876533333 899999999999999999999998544445555556666666665 378
Q ss_pred cEEEEEecCCCccccc-ccccCC-CCCCC-CcE--EEEEeCchhhh--------hhcccceeecccCCHHHHHHHhHhhh
Q 007339 87 KFVLILDDMWEAFPLQ-EIGIPE-PSEEN-GCK--LVITTRLYRVC--------RSMKCKQVAVELLSKQEAFNLFIDGV 153 (607)
Q Consensus 87 ~~LlVlDdv~~~~~~~-~l~~~~-~~~~~-~~~--IliTtR~~~~~--------~~~~~~~~~l~~L~~~ea~~L~~~~~ 153 (607)
..++|||+++.+..-. +....+ ..... .++ ||..+.+..+. ...+...+..++-+.+|-.+.+..++
T Consensus 124 ~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 124 TVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred eEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 9999999998875432 121111 11111 233 34444433322 22333337789999999999999988
Q ss_pred CCC--CCCCccchHHHHHHHHHHcCCc-hHHHHHH--HHhhcCCc-----cHHHHHHHHHHHHhccccCCCCchhhhhhH
Q 007339 154 GSS--ILQVPILNKEIINEVVEECGCL-PLAIVTV--AASMSGEE-----EIYEWQNALNELRGRLRSLNDVDTKVFGRL 223 (607)
Q Consensus 154 ~~~--~~~~~~~~~~~~~~i~~~~~g~-PLal~~~--a~~l~~~~-----~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 223 (607)
... ...-.+..-+.+..++...+|- -.||.++ |+.+++.. ..+.-..+..+ --....
T Consensus 204 ~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~-------------~~~~~~ 270 (366)
T COG1474 204 EEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEE-------------IERDVL 270 (366)
T ss_pred HhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHH-------------hhHHHH
Confidence 443 1111111334444444555543 3444443 22332211 11111111111 111233
Q ss_pred HhhhcCCChhhHHHHHHHhhcCCCCCccChHHH--HHHHHHhCCccccCCchhhHHHHHHHHHHHHHccccccc
Q 007339 224 EFSYHRLKDEKLQQCFLYCAQYPEDFAIPKDKL--IDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLESA 295 (607)
Q Consensus 224 ~~s~~~L~~~~~~~~~l~la~f~~~~~i~~~~l--~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 295 (607)
.-.+..|+ .+.+..++..+... ..+....+ ...++++.+-. .......++.+|...+++...
T Consensus 271 ~~~~~~L~-~~~ki~L~~i~~~~--~~~~~~~~y~~y~~~~~~~~~-------~~~~~~~ii~~L~~lgiv~~~ 334 (366)
T COG1474 271 EEVLKTLP-LHQKIVLLAIVELT--VEISTGELYDVYESLCERLRT-------SQRRFSDIISELEGLGIVSAS 334 (366)
T ss_pred HHHHHcCC-HhHHHHHHHHHHhc--CCCChHHHHHHHHHHHhhhCc-------hHHHHHHHHHHHHhcCeEEee
Confidence 44467787 66555544443332 22333333 22333332211 334566778888888888865
No 55
>PRK04195 replication factor C large subunit; Provisional
Probab=98.64 E-value=2.6e-06 Score=89.74 Aligned_cols=223 Identities=14% Similarity=0.164 Sum_probs=123.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.+.|+|++|+||||+|+.+++.+. ++ ++.++++...+...+ ..++........ +..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~-----~~-~ielnasd~r~~~~i-~~~i~~~~~~~s---------------l~~ 96 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG-----WE-VIELNASDQRTADVI-ERVAGEAATSGS---------------LFG 96 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC-----CC-EEEEcccccccHHHH-HHHHHHhhccCc---------------ccC
Confidence 57899999999999999999999873 32 445555544333322 223222211100 001
Q ss_pred CCcEEEEEecCCCccc------ccccccCCCCCCCCcEEEEEeCchh-hhh-hc--ccceeecccCCHHHHHHHhHhhhC
Q 007339 85 KEKFVLILDDMWEAFP------LQEIGIPEPSEENGCKLVITTRLYR-VCR-SM--KCKQVAVELLSKQEAFNLFIDGVG 154 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~IliTtR~~~-~~~-~~--~~~~~~l~~L~~~ea~~L~~~~~~ 154 (607)
.++.+||||+++.... +..+...+. .....||+|+.+.. ... .. .+..+++.+++.++....+.+.+.
T Consensus 97 ~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 97 ARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICR 174 (482)
T ss_pred CCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHH
Confidence 3678999999987643 233333332 12334666664322 111 11 223389999999999999998885
Q ss_pred CCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhccccCCCCchhhhhhHHhhhcCCChhh
Q 007339 155 SSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEK 234 (607)
Q Consensus 155 ~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~s~~~L~~~~ 234 (607)
.....- .++.++.|++.++|-...+......+......-. .+.+..+.. .+....++.++...|..-....
T Consensus 175 ~egi~i---~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it-~~~v~~~~~-----~d~~~~if~~l~~i~~~k~~~~ 245 (482)
T PRK04195 175 KEGIEC---DDEALKEIAERSGGDLRSAINDLQAIAEGYGKLT-LEDVKTLGR-----RDREESIFDALDAVFKARNADQ 245 (482)
T ss_pred HcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCc-HHHHHHhhc-----CCCCCCHHHHHHHHHCCCCHHH
Confidence 553333 5788999999999987655444333332211000 111111111 2233466777776665333233
Q ss_pred HHHHHHHhhcCCCCCccChHHHHHHHHHhCCccc
Q 007339 235 LQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDE 268 (607)
Q Consensus 235 ~~~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~ 268 (607)
+...+..+ .++. ..+-.|+.+.++..
T Consensus 246 a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 246 ALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred HHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 33332221 1232 34667888888765
No 56
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.64 E-value=3.4e-07 Score=85.27 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=100.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
...+.|+|+.|+|||.|..++++..... ..-..++|++ ..++...+...+... ....+...+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~-- 95 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQ-HPGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRL-- 95 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHH-CTTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHH--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhc-cccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhh--
Confidence 3568999999999999999999987643 1222477875 345666666666541 223344444
Q ss_pred CCcEEEEEecCCCcccc---c-ccccCCCC-CCCCcEEEEEeCchh---------hhhhcccce-eecccCCHHHHHHHh
Q 007339 85 KEKFVLILDDMWEAFPL---Q-EIGIPEPS-EENGCKLVITTRLYR---------VCRSMKCKQ-VAVELLSKQEAFNLF 149 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~~---~-~l~~~~~~-~~~~~~IliTtR~~~---------~~~~~~~~~-~~l~~L~~~ea~~L~ 149 (607)
..-=+|+|||++....- + ++...+.. ...|.+||+|++..+ +..+..+.. +++++.++++..+++
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 24568999999876332 1 22222211 134668999996332 223333444 899999999999999
Q ss_pred HhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHh
Q 007339 150 IDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAAS 188 (607)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~ 188 (607)
.+.+......- .+++++.|++.+.+..-.|..+-..
T Consensus 176 ~~~a~~~~~~l---~~~v~~~l~~~~~~~~r~L~~~l~~ 211 (219)
T PF00308_consen 176 QKKAKERGIEL---PEEVIEYLARRFRRDVRELEGALNR 211 (219)
T ss_dssp HHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHhCCCC---cHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 99886664444 6788888999888777666554433
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.3e-06 Score=91.55 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=94.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----CCcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP----ENEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~ 80 (607)
.+.+.++|+.|+||||+|+.+++.+-.. . ++. ..+......++.+...-..+.. ......+.++.++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~-~------~~~-~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~ 108 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE-T------GVT-STPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLD 108 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC-c------CCC-CCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHH
Confidence 3577999999999999999999887421 0 000 0011111222222211110000 00001111222222
Q ss_pred HH----hcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCch-hhhhh--cccceeecccCCHHHHHHHhHh
Q 007339 81 ML----KAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLY-RVCRS--MKCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~----~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~-~~~~~--~~~~~~~l~~L~~~ea~~L~~~ 151 (607)
.. ..++..++|||+++.+. ....+...+..-....++|++|.+. .+... .++..+++++++.++..+.+.+
T Consensus 109 ~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~ 188 (702)
T PRK14960 109 NVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGA 188 (702)
T ss_pred HHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHH
Confidence 11 13567899999999773 3444444443333455666666543 22221 2233389999999999999999
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
++....... .++.+..|++.++|-+..
T Consensus 189 Il~kEgI~i---d~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 189 ILEKEQIAA---DQDAIWQIAESAQGSLRD 215 (702)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 886654444 678899999999997743
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=5.1e-09 Score=96.46 Aligned_cols=35 Identities=17% Similarity=-0.017 Sum_probs=17.8
Q ss_pred cccceeeeeeeccCCCCCc--ccCCcccceeeeeeec
Q 007339 526 EVDKSVRLFACKICEREEP--IVLPEDVQYLEMIRVD 560 (607)
Q Consensus 526 ~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~l~~~~ 560 (607)
-+|..|++++|++...... ++.+|-|+.|.+.+||
T Consensus 374 YSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 374 YSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 4455566666655433222 4445555555555554
No 59
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.59 E-value=2.6e-07 Score=87.34 Aligned_cols=153 Identities=11% Similarity=0.077 Sum_probs=95.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
+.+.+.|+|++|+|||+|+..+++..... -..+.|+++..... .. ..+.+.+.
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~---~~~v~y~~~~~~~~---~~---------------------~~~~~~~~ 96 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQR---GRAVGYVPLDKRAW---FV---------------------PEVLEGME 96 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEHHHHhh---hh---------------------HHHHHHhh
Confidence 34689999999999999999999886532 23477777643110 00 01111121
Q ss_pred cCCcEEEEEecCCCcc---cccc-cccCCCCC--CCCcEEEEEeCchhh---------hhhcccce-eecccCCHHHHHH
Q 007339 84 AKEKFVLILDDMWEAF---PLQE-IGIPEPSE--ENGCKLVITTRLYRV---------CRSMKCKQ-VAVELLSKQEAFN 147 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~---~~~~-l~~~~~~~--~~~~~IliTtR~~~~---------~~~~~~~~-~~l~~L~~~ea~~ 147 (607)
+--++++||++... .|++ +...+... ....++|+||+.... ..++.+.. ++++++++++-.+
T Consensus 97 --~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~ 174 (235)
T PRK08084 97 --QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQ 174 (235)
T ss_pred --hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHH
Confidence 12489999997652 2221 11222111 122469999984422 23333434 8999999999999
Q ss_pred HhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHh
Q 007339 148 LFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAAS 188 (607)
Q Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~ 188 (607)
++.+.+......- .++..+.|++.+.|..-++..+-..
T Consensus 175 ~l~~~a~~~~~~l---~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 175 ALQLRARLRGFEL---PEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 9988675443333 6789999999999887666555443
No 60
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=6.5e-07 Score=96.73 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=94.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC------------------CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN------------------KFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
..+.++|+.|+||||+|+.+++.+..... .|..+++++......+.++ +.+...+..
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdI-ReLie~v~~---- 113 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDT-RELLDNVQY---- 113 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHH-HHHHHHHHh----
Confidence 34689999999999999999988743200 0111223322211112211 222222211
Q ss_pred CcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEE-EeCchhhhhhc--ccceeecccCCH
Q 007339 68 NEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVI-TTRLYRVCRSM--KCKQVAVELLSK 142 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Ili-TtR~~~~~~~~--~~~~~~l~~L~~ 142 (607)
.-..+++.++|||+++.+. ..+.++..+-.-....++|+ ||....+.... ++..+++.+++.
T Consensus 114 -------------~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~ 180 (944)
T PRK14949 114 -------------RPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQ 180 (944)
T ss_pred -------------hhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCH
Confidence 0014678899999999873 34444433332233444444 44444444322 234499999999
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH-HHHHH
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL-AIVTV 185 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 185 (607)
++..+.+.+++....... .++.++.|++.++|.|. |+.++
T Consensus 181 eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 181 DEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999998886543333 67889999999999875 44443
No 61
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=8.1e-09 Score=103.29 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=107.1
Q ss_pred cccccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhcc
Q 007339 342 LERRIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECME 421 (607)
Q Consensus 342 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 421 (607)
....+|.. ..++..|+.++++.|+++.+|..++.|+ |+.|-+++|++....+.++.+.+|..||.+.|.+..+|..++
T Consensus 109 ~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~ 186 (722)
T KOG0532|consen 109 CIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLG 186 (722)
T ss_pred cceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhh
Confidence 33445554 5577788888888888888887777766 777777777655444477777788888888888888888888
Q ss_pred CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccc
Q 007339 422 MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKST 496 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~ 496 (607)
.+.+|+.|++..|++..+|++. . .-.|..||++.|+.. ..+..|.+|. +|++|-|.+|.+..-+..+...
T Consensus 187 ~l~slr~l~vrRn~l~~lp~El-~-~LpLi~lDfScNkis--~iPv~fr~m~-~Lq~l~LenNPLqSPPAqIC~k 256 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLEDLPEEL-C-SLPLIRLDFSCNKIS--YLPVDFRKMR-HLQVLQLENNPLQSPPAQICEK 256 (722)
T ss_pred hHHHHHHHHHhhhhhhhCCHHH-h-CCceeeeecccCcee--ecchhhhhhh-hheeeeeccCCCCCChHHHHhc
Confidence 8888888888888888887765 3 456778888866533 2335677788 8888888888877766665544
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.57 E-value=6.8e-07 Score=88.94 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=93.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFN-DVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
..+.+.++|++|+||||+|..+++.... ..|. .++-++.+....... .+.+.+.+...... .
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~eln~sd~~~~~~-vr~~i~~~~~~~~~--------------~ 95 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHELLG--PNYKEAVLELNASDDRGIDV-VRNKIKMFAQKKVT--------------L 95 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhc--ccCccceeeecccccccHHH-HHHHHHHHHhcccc--------------C
Confidence 4456789999999999999999998642 2222 233344433333332 22222222111000 0
Q ss_pred hcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCch-hhhhhc--ccceeecccCCHHHHHHHhHhhhCCCC
Q 007339 83 KAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLY-RVCRSM--KCKQVAVELLSKQEAFNLFIDGVGSSI 157 (607)
Q Consensus 83 ~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~-~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~ 157 (607)
..++..++|+|+++.+.. ...+...+......+++++++... .+.... ++..++++++++++..+.+.+.+....
T Consensus 96 ~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 96 PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcC
Confidence 024578999999998742 222222222223456666666532 222211 223389999999999999998886654
Q ss_pred CCCccchHHHHHHHHHHcCCchHH
Q 007339 158 LQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 158 ~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
..- .++.++.|++.++|-...
T Consensus 176 i~i---~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 176 VPY---VPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred CCC---CHHHHHHHHHHcCCCHHH
Confidence 443 567889999999987643
No 63
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=1e-06 Score=91.64 Aligned_cols=155 Identities=14% Similarity=0.165 Sum_probs=94.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC----------------------CCCeEEEEEeCCCCCHHHHHHHHHHHHcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN----------------------KFNDVIWVTVSQPLDLFKLQTEIATALKQ 63 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~----------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 63 (607)
+.+.++|+.|+||||+|+.+++..-.... ....++.++........++.. +......
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~-iie~a~~ 122 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRR-IIESAEY 122 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHH-HHHHHHh
Confidence 57889999999999999999988742100 001133333322222222221 1111110
Q ss_pred CCCCCcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEE-EEeCchhhhhhc--ccceeecc
Q 007339 64 SLPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLV-ITTRLYRVCRSM--KCKQVAVE 138 (607)
Q Consensus 64 ~~~~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Il-iTtR~~~~~~~~--~~~~~~l~ 138 (607)
. -..+++.++|+|+++... .+..+...+......+.+| .||+...+.... ++..+++.
T Consensus 123 ~-----------------P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~ 185 (507)
T PRK06645 123 K-----------------PLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLR 185 (507)
T ss_pred c-----------------cccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEcc
Confidence 0 013567899999998763 3555554444333444544 455544444322 23338999
Q ss_pred cCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 139 LLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 139 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
+++.+|..+.+.+++....... .++.++.|++.++|.+.-
T Consensus 186 ~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 186 RLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSARD 225 (507)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 9999999999999986654333 678889999999997743
No 64
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.57 E-value=1.7e-08 Score=95.36 Aligned_cols=238 Identities=14% Similarity=0.045 Sum_probs=142.6
Q ss_pred hcCCCCceEEEccCCCCc-----cCCccccCCccCcEeeccccc---CCCCCC--------cccCCCCCCEEeccCCchh
Q 007339 351 FVHMNGLKVLNLSHTDIE-----VLPSSISDLTNLRSLLLRWCG---RLKRVP--------SLAKLLALQYLDLEGTWIE 414 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~---~~~~~~--------~~~~l~~L~~L~l~~~~l~ 414 (607)
...+..++.+++++|.|. .+-..+.+.++|+..+++.-- ....+| .+..+++|++||||.|-+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 456778888888888765 233446667778877777421 111222 2456668888888888443
Q ss_pred -----hhHHhccCCCCCCeeeccCCcCCcCCC-------------ccccCCCCCCEEEcccCcchhhhh---HHHhhccc
Q 007339 415 -----EVLECMEMLENLSHLYLSSLQLKKFPT-------------GILPRLRNLYKLKLSFGNEALRET---VEEAASLS 473 (607)
Q Consensus 415 -----~l~~~~~~l~~L~~L~l~~~~l~~~~~-------------~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~ 473 (607)
.+-.-+.+++.|++|.|.+|.+..... ...++-++|+++...+|....... ...+...+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 223345678888888888887653221 123566778888888764332211 25566677
Q ss_pred ccccEEEeeecCccc--c-ccccccccCCcceeEEEEeecc-hhhhhhcccccccccccceeeeeeeccCCCCCc-----
Q 007339 474 DGLDYFEGCFSKLKD--F-NRYVKSTDGRGSKNYCLVLSES-WMYYMFIRDLITDLEVDKSVRLFACKICEREEP----- 544 (607)
Q Consensus 474 ~~L~~L~l~~~~~~~--~-~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~----- 544 (607)
.|+.+.++.|.+.. + .-.....-+++|+.|++.-+-- ..-.......++.+++|+.|++++|.+...+..
T Consensus 186 -~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 186 -TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred -ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 88888888777643 2 1111222345567666652210 001122345566778899999999988766543
Q ss_pred -ccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEecccc
Q 007339 545 -IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHN 595 (607)
Q Consensus 545 -~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~ 595 (607)
....|+|+.|.+.+|..-.+-. .... ..+ ...|.|+.|+|++|+.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~-~~la----~~~-~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAA-LALA----ACM-AEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHH-HHHH----HHH-hcchhhHHhcCCcccc
Confidence 3447889999999985211100 0000 011 3478999999999875
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=1.1e-06 Score=88.93 Aligned_cols=156 Identities=14% Similarity=0.145 Sum_probs=92.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC------------------CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN------------------KFNDVIWVTVSQPLDLFKLQTEIATALKQSLP 66 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 66 (607)
.+.+.++|+.|+||||+|+.++........ .+..+.+++........+ .+.+...+....
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p- 115 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEE-MREILDNIYYSP- 115 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCCHHH-HHHHHHHHhcCc-
Confidence 356789999999999999999988642100 011122232221111111 122222211100
Q ss_pred CCcccccchHHHHHHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCc-hhhhhhcc--cceeecccCC
Q 007339 67 ENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRL-YRVCRSMK--CKQVAVELLS 141 (607)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~-~~~~~~~~--~~~~~l~~L~ 141 (607)
..+++.++|+|+++.... ++.+...+.......++|++|.+ ..+..... +..+++.+++
T Consensus 116 ----------------~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~ 179 (363)
T PRK14961 116 ----------------SKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIIS 179 (363)
T ss_pred ----------------ccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCC
Confidence 024567999999988753 44454444433345556665543 33333222 3338999999
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
.++..+.+.+++......- .++.++.|++.++|.|..
T Consensus 180 ~~el~~~L~~~~~~~g~~i---~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 180 EEKIFNFLKYILIKESIDT---DEYALKLIAYHAHGSMRD 216 (363)
T ss_pred HHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 9999999988775543333 567889999999998753
No 66
>PRK08727 hypothetical protein; Validated
Probab=98.57 E-value=5.8e-07 Score=84.83 Aligned_cols=145 Identities=11% Similarity=0.097 Sum_probs=91.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
..+.|+|++|+|||.|+..+++....+ . ..+.|+++.+ ....+. ...+.+ .
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~--~-~~~~y~~~~~------~~~~~~------------------~~~~~l--~ 92 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA--G-RSSAYLPLQA------AAGRLR------------------DALEAL--E 92 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--C-CcEEEEeHHH------hhhhHH------------------HHHHHH--h
Confidence 469999999999999999998886533 2 2467776432 111111 112222 2
Q ss_pred CcEEEEEecCCCccc---cc-ccccCCCC-CCCCcEEEEEeCchhh---------hhhcccc-eeecccCCHHHHHHHhH
Q 007339 86 EKFVLILDDMWEAFP---LQ-EIGIPEPS-EENGCKLVITTRLYRV---------CRSMKCK-QVAVELLSKQEAFNLFI 150 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~---~~-~l~~~~~~-~~~~~~IliTtR~~~~---------~~~~~~~-~~~l~~L~~~ea~~L~~ 150 (607)
+.-+||+||++.... +. .+...+.. ...+..||+||+...- ..+..+. .+++++++.++-.+++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 335899999986532 21 12211111 1235569999984222 2222233 38999999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
+++......- .++....|++.++|-.-.+
T Consensus 173 ~~a~~~~l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRGLAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 8775543333 6788899999998776554
No 67
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=6.4e-07 Score=93.59 Aligned_cols=169 Identities=14% Similarity=0.096 Sum_probs=94.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCC-CCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----CCcccccchHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNK-FNDVIWVTVSQPLDLFKLQTEIATALKQSLP----ENEDKVRRPGRLLG 80 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~ 80 (607)
+.+.++|+.|+||||+|+.+++.+-..... -.++. .........+..|...-..+.. ......+.+..+.+
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie 114 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLD 114 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHH
Confidence 457899999999999999999887421000 00000 0001111122222111000000 00011112222333
Q ss_pred HHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCc-EEEEEeCchhhhhhcc--cceeecccCCHHHHHHHhHh
Q 007339 81 MLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGC-KLVITTRLYRVCRSMK--CKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~-~IliTtR~~~~~~~~~--~~~~~l~~L~~~ea~~L~~~ 151 (607)
... .++..++|||+++.+. ....++..+..-...+ -|++||....+..... +..+.+..++.++..+.+.+
T Consensus 115 ~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 115 KAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred HHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHH
Confidence 221 4677899999999883 3444444443222333 4666666555554332 33389999999999999998
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
++....... .++.++.|++.++|.|..
T Consensus 195 Il~~Egi~~---d~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 195 ILGEEGIAH---EVNALRLLAQAAQGSMRD 221 (700)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 886553333 567789999999999853
No 68
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=2.1e-07 Score=94.70 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=94.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----CcccccchHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRPGRLLGM 81 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~~ 81 (607)
+.+.++|+.|+||||+|+.+++..... . . .-...+..+.+ +..+.......... .....+.++.+.+.
T Consensus 41 ha~Lf~GP~GtGKTTlAriLAk~Lnce-~-~--~~~~pCg~C~s----C~~i~~g~~~dviEIdaas~~gVd~IReL~e~ 112 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARILAKRLNCE-N-P--IGNEPCNECTS----CLEITKGISSDVLEIDAASNRGIENIRELRDN 112 (484)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCcc-c-c--cCccccCCCcH----HHHHHccCCccceeechhhcccHHHHHHHHHH
Confidence 457999999999999999999987422 1 0 00111111111 22222221111100 01111122333332
Q ss_pred Hh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcE-EEEEeCchhhhhhc--ccceeecccCCHHHHHHHhHhh
Q 007339 82 LK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCK-LVITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 82 ~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~ 152 (607)
+. .++..++|||+++.+. .+..++..+..-..... |+.||....+.... ++..+.+..++.++..+.+.+.
T Consensus 113 l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i 192 (484)
T PRK14956 113 VKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKL 192 (484)
T ss_pred HHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHH
Confidence 22 4677899999999773 35555444432223333 34555544443332 2333899999999999999988
Q ss_pred hCCCCCCCccchHHHHHHHHHHcCCchH
Q 007339 153 VGSSILQVPILNKEIINEVVEECGCLPL 180 (607)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~~~g~PL 180 (607)
+......- .++.+..|++..+|.+.
T Consensus 193 ~~~Egi~~---e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 193 CKIENVQY---DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHcCCCC---CHHHHHHHHHHcCChHH
Confidence 76554333 67889999999999984
No 69
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=3.5e-08 Score=71.40 Aligned_cols=59 Identities=34% Similarity=0.389 Sum_probs=47.9
Q ss_pred CCCCEEeccCCchhhhHH-hccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCc
Q 007339 401 LALQYLDLEGTWIEEVLE-CMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGN 459 (607)
Q Consensus 401 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 459 (607)
++|++|++++|+++.+|+ .+..+++|++|++++|.++.+++..|.++++|+.|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467888888888888875 56778888888888888888888888888888888888775
No 70
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.54 E-value=1.5e-06 Score=79.43 Aligned_cols=148 Identities=14% Similarity=0.179 Sum_probs=89.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC------------------CCCeEEEEEeCC-CCCHHHHHHHHHHHHccCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN------------------KFNDVIWVTVSQ-PLDLFKLQTEIATALKQSLP 66 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~ 66 (607)
+.+.++|+.|+|||++|+.++...-.... .+....++.... ....+ ..+.+.+.+....
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~-~i~~i~~~~~~~~- 92 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVD-QVRELVEFLSRTP- 92 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHH-HHHHHHHHHccCc-
Confidence 67899999999999999999888743200 111123332221 11111 1112222222110
Q ss_pred CCcccccchHHHHHHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCch-hhhhhc--ccceeecccCC
Q 007339 67 ENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLY-RVCRSM--KCKQVAVELLS 141 (607)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~-~~~~~~--~~~~~~l~~L~ 141 (607)
..+.+.++|+|+++.... .+.+...+......+.+|++|++. .+.... ....+++.+++
T Consensus 93 ----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 93 ----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred ----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 025678999999987733 444554544434455666666543 222222 22338999999
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL 180 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 180 (607)
.++..+.+.+. | - .++.++.+++.++|.|.
T Consensus 157 ~~~~~~~l~~~-g-----i---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 157 EEALLQWLIRQ-G-----I---SEEAAELLLALAGGSPG 186 (188)
T ss_pred HHHHHHHHHHc-C-----C---CHHHHHHHHHHcCCCcc
Confidence 99999999877 2 1 45789999999999885
No 71
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.53 E-value=1.1e-06 Score=88.76 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=96.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCC-eEEEEEeCCCCCH--HHHHH--HHHHHHccCCCCCcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFN-DVIWVTVSQPLDL--FKLQT--EIATALKQSLPENEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~--~~~~~--~i~~~l~~~~~~~~~~~~~~~~l~ 79 (607)
.+.+.++|++|+|||++|+.+++..... .+. ..+.+++...... ..+.. .....++..........+....+.
T Consensus 36 ~~~lll~Gp~GtGKT~la~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (337)
T PRK12402 36 LPHLLVQGPPGSGKTAAVRALARELYGD--PWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVL 113 (337)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc--ccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHH
Confidence 3568899999999999999999887522 211 2455554331100 00000 000000000000011112223333
Q ss_pred HHHh-----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCch-hhhhhcc--cceeecccCCHHHHHHHh
Q 007339 80 GMLK-----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLY-RVCRSMK--CKQVAVELLSKQEAFNLF 149 (607)
Q Consensus 80 ~~~~-----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~-~~~~~~~--~~~~~l~~L~~~ea~~L~ 149 (607)
+... .+.+.++|+||++.... ...+...+......+++|+||... .+..... ...+++.+++.++..+++
T Consensus 114 ~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l 193 (337)
T PRK12402 114 KEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVL 193 (337)
T ss_pred HHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHH
Confidence 2221 13456899999987632 222333332233456777777533 2222222 223889999999999999
Q ss_pred HhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 150 IDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
.+.+......- .++.++.+++.++|.+-.+...
T Consensus 194 ~~~~~~~~~~~---~~~al~~l~~~~~gdlr~l~~~ 226 (337)
T PRK12402 194 ESIAEAEGVDY---DDDGLELIAYYAGGDLRKAILT 226 (337)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 98875543333 6788999999999987655443
No 72
>PF14516 AAA_35: AAA-like domain
Probab=98.53 E-value=1.9e-05 Score=78.64 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=105.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-----CCHHHHHHHHH----HHHccCCCC------
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-----LDLFKLQTEIA----TALKQSLPE------ 67 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~----~~l~~~~~~------ 67 (607)
+....+.|.|+-.+|||+|..++.+..+.. .+ .++++++... .+....++.+. ++++.+..-
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~--~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~ 105 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQ--GY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDE 105 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHC--CC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 346789999999999999999999988643 34 3668887652 24555554444 444432210
Q ss_pred -CcccccchHHHHHHHh--cCCcEEEEEecCCCccccc----ccccCCCC----CC----CCcE--EEEEeCchhhhhh-
Q 007339 68 -NEDKVRRPGRLLGMLK--AKEKFVLILDDMWEAFPLQ----EIGIPEPS----EE----NGCK--LVITTRLYRVCRS- 129 (607)
Q Consensus 68 -~~~~~~~~~~l~~~~~--~~~~~LlVlDdv~~~~~~~----~l~~~~~~----~~----~~~~--IliTtR~~~~~~~- 129 (607)
..........+.+.++ .+++.+|+||+++...... .+...++. .. ...- |++.+........
T Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~ 185 (331)
T PF14516_consen 106 EIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDI 185 (331)
T ss_pred hcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCC
Confidence 0111112222223333 3689999999998764321 12111110 00 0111 2222221111111
Q ss_pred ----cccc-eeecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcC
Q 007339 130 ----MKCK-QVAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSG 191 (607)
Q Consensus 130 ----~~~~-~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~ 191 (607)
.+.. .++|++|+.+|...|..++-..- .++..++|...+||+|..+..++..+..
T Consensus 186 ~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 186 NQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred CCCCcccccceeCCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 28899999999999987764331 3445999999999999999999998865
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=1.7e-06 Score=90.32 Aligned_cols=151 Identities=13% Similarity=0.050 Sum_probs=93.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCC------------------eEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFN------------------DVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~------------------~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
..+.++|++|+||||+|+.++......+. +. .+.+++......+.
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~-~~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd---------------- 99 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMAVNCSGE-DPKPCGECESCLAVRRGAHPDVLEIDAASNNSVE---------------- 99 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccCC-CCCCCCcChhhHHHhcCCCCceEEecccccCCHH----------------
Confidence 45799999999999999999988743211 11 12333322111111
Q ss_pred CcccccchHHHHHHHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeC-chhhhhhc--ccceeecc
Q 007339 68 NEDKVRRPGRLLGMLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTR-LYRVCRSM--KCKQVAVE 138 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR-~~~~~~~~--~~~~~~l~ 138 (607)
.+..+..... .+++.++|+|+++... .+..+...+..-.....+|++|. ...+.... .+..+++.
T Consensus 100 ------~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~ 173 (504)
T PRK14963 100 ------DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFR 173 (504)
T ss_pred ------HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEec
Confidence 1222222111 2567799999998763 34555545443334444554444 33333222 23338999
Q ss_pred cCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 139 LLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 139 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
+++.++..+.+.+++....... .++.++.|++.++|.+.-+
T Consensus 174 ~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 174 RLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred CCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 9999999999999886554333 6788999999999998654
No 74
>PLN03150 hypothetical protein; Provisional
Probab=98.52 E-value=1.8e-07 Score=101.29 Aligned_cols=102 Identities=24% Similarity=0.287 Sum_probs=53.2
Q ss_pred ceEEEccCCCCc-cCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hhHHhccCCCCCCeeeccC
Q 007339 357 LKVLNLSHTDIE-VLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EVLECMEMLENLSHLYLSS 433 (607)
Q Consensus 357 L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~ 433 (607)
++.|+|++|.+. .+|..+..+++|+.|+|++|.+...+| .+..+++|+.|+|++|+++ .+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 445555555554 445555555555555555555555555 5555555555555555555 4555555555555555555
Q ss_pred CcCCcCCCccccC-CCCCCEEEcccC
Q 007339 434 LQLKKFPTGILPR-LRNLYKLKLSFG 458 (607)
Q Consensus 434 ~~l~~~~~~~~~~-l~~L~~L~l~~~ 458 (607)
|++++..|..++. ..++..+++.+|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 5555333322222 223444444443
No 75
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.50 E-value=4.1e-06 Score=83.91 Aligned_cols=160 Identities=10% Similarity=0.123 Sum_probs=92.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.+.|+|++|+|||++|+.++.........+ ..+-++.+.......+...+ ..+...... -
T Consensus 37 ~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~i-~~~~~~~~~---------------~ 99 (319)
T PRK00440 37 NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGIDVIRNKI-KEFARTAPV---------------G 99 (319)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchHHHHHHH-HHHHhcCCC---------------C
Confidence 345689999999999999999999864321111 12222222222222222222 222111000 0
Q ss_pred cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCch-hhhhhc--ccceeecccCCHHHHHHHhHhhhCCCCC
Q 007339 84 AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLY-RVCRSM--KCKQVAVELLSKQEAFNLFIDGVGSSIL 158 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~-~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~ 158 (607)
...+.++|+|+++.... ...+...+......+++|+++... .+.... ....+++.+++.++..+.+.+++.....
T Consensus 100 ~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~ 179 (319)
T PRK00440 100 GAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI 179 (319)
T ss_pred CCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC
Confidence 13467999999987632 223333333333455677666432 221111 1223889999999999999988865533
Q ss_pred CCccchHHHHHHHHHHcCCchHHHH
Q 007339 159 QVPILNKEIINEVVEECGCLPLAIV 183 (607)
Q Consensus 159 ~~~~~~~~~~~~i~~~~~g~PLal~ 183 (607)
.- .++.++.+++.++|.+..+.
T Consensus 180 ~i---~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 180 EI---TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHH
Confidence 33 67889999999999876543
No 76
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2.9e-06 Score=88.79 Aligned_cols=160 Identities=15% Similarity=0.156 Sum_probs=95.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCC------------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKP------------------NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
+.+.++|+.|+||||+|+.++....... ..|..+++++......++++ +.+...+..
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~i-r~ii~~~~~---- 113 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEET-KEILDNIQY---- 113 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHH-HHHHHHHHh----
Confidence 4578999999999999999998764210 11223444433222222221 122221110
Q ss_pred CcccccchHHHHHHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcE-EEEEeCchhhhhhc--ccceeecccCCH
Q 007339 68 NEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCK-LVITTRLYRVCRSM--KCKQVAVELLSK 142 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~--~~~~~~l~~L~~ 142 (607)
.-..+++.++|+|+++.+.. .+.+...+......++ |++||....+.... ++..+++.+++.
T Consensus 114 -------------~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~ 180 (546)
T PRK14957 114 -------------MPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQ 180 (546)
T ss_pred -------------hhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCH
Confidence 00135778999999987733 4444444443333444 44555544444332 233389999999
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch-HHHHHHH
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP-LAIVTVA 186 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~a 186 (607)
++..+.+.+.+....... .++.+..|++.++|-+ .|+..+-
T Consensus 181 ~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 181 ADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999998888775543333 6788899999999966 4555543
No 77
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=8e-08 Score=88.69 Aligned_cols=209 Identities=16% Similarity=0.038 Sum_probs=124.4
Q ss_pred CcEeecccccCCCCCC--cc-cCCCCCCEEeccCCchh---hhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEE
Q 007339 380 LRSLLLRWCGRLKRVP--SL-AKLLALQYLDLEGTWIE---EVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKL 453 (607)
Q Consensus 380 L~~L~l~~~~~~~~~~--~~-~~l~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 453 (607)
+..+.+.+|.+...-. .+ .....++.+||.+|.|+ ++-..+.+++.|+.|+|+.|.+.......-.-..+|++|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 3344454444333222 22 35567888999998776 444456788999999999988764433221256788888
Q ss_pred EcccCcchhhhhHHHhhcccccccEEEeeecCccccccccc--cccCCcceeEEEEeecchhhhhhccccccccccccee
Q 007339 454 KLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVK--STDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSV 531 (607)
Q Consensus 454 ~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 531 (607)
-|.+....-...-..+..+| .+++|.++.|+...+...-. ..-.+.+..++...+ ....|......-.-+|++..+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP-~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c-~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLP-KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC-LEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEcCCCCChhhhhhhhhcch-hhhhhhhccchhhhhccccccccccchhhhhhhcCCc-HHHHHHHHHhHHhhcccchhe
Confidence 88875433333335567788 99999998886544221111 111122344444322 222222222211234889999
Q ss_pred eeeeeccCCCCCc--ccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEecccchhhh
Q 007339 532 RLFACKICEREEP--IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLKNL 599 (607)
Q Consensus 532 ~L~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l 599 (607)
.+..|.+.....- ...++++.-|+++.+. +.++..+..+ ..+|.|..|.+++.|-++.+
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~L--------n~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDAL--------NGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccc-cccHHHHHHH--------cCCchhheeeccCCcccccc
Confidence 9999977654332 5677778888887763 4444433333 77899999999888876654
No 78
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.46 E-value=3e-07 Score=86.73 Aligned_cols=92 Identities=15% Similarity=0.157 Sum_probs=61.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHHccCCCCCccc--c----cchH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP--LDLFKLQTEIATALKQSLPENEDK--V----RRPG 76 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~--~----~~~~ 76 (607)
...++|.|++|+|||||++.+++.... .+|+.++|+.+... .++.++++.+...+-......+.. . ....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~--~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK--NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc--ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999863 37899999986655 688899888833322111111110 0 1111
Q ss_pred HHHHHHhcCCcEEEEEecCCCc
Q 007339 77 RLLGMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 77 ~l~~~~~~~~~~LlVlDdv~~~ 98 (607)
........++++++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 1222223689999999999765
No 79
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.46 E-value=1.7e-06 Score=82.36 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=99.8
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
.+.++.+.+||++|+||||||+.++..-+.. ...||..+....-.+.++.|.++-... .
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~-----SyrfvelSAt~a~t~dvR~ife~aq~~----------------~ 217 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKH-----SYRFVELSATNAKTNDVRDIFEQAQNE----------------K 217 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCC-----ceEEEEEeccccchHHHHHHHHHHHHH----------------H
Confidence 3567889999999999999999999986533 267787766555555556665544321 1
Q ss_pred HhcCCcEEEEEecCCCc--ccccccccCCCCCCCCcEEEE--EeCchhhhh----hcccceeecccCCHHHHHHHhHhhh
Q 007339 82 LKAKEKFVLILDDMWEA--FPLQEIGIPEPSEENGCKLVI--TTRLYRVCR----SMKCKQVAVELLSKQEAFNLFIDGV 153 (607)
Q Consensus 82 ~~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~Ili--TtR~~~~~~----~~~~~~~~l~~L~~~ea~~L~~~~~ 153 (607)
.+.++|.+|++|.|... .+-+.+ +|.-.+|..++| ||.++...- ..++..+.|++|..++...++.+..
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 12688999999999755 233333 333345665555 555544321 1233448899999999999988743
Q ss_pred ---CCC-----CCCC--ccchHHHHHHHHHHcCCchH
Q 007339 154 ---GSS-----ILQV--PILNKEIINEVVEECGCLPL 180 (607)
Q Consensus 154 ---~~~-----~~~~--~~~~~~~~~~i~~~~~g~PL 180 (607)
+.. ..+. ...+..+++.++..|.|-..
T Consensus 295 a~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 295 ASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred HhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 232 1111 12356677788888888753
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.1e-05 Score=83.78 Aligned_cols=162 Identities=15% Similarity=0.185 Sum_probs=93.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC------------------CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN------------------KFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
+.+.++|++|+||||+|+.++........ .+..+..++......+.++. .+.......
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~--- 112 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIR-KIRDAVGYR--- 112 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHH-HHHHHHhhC---
Confidence 45789999999999999999988642110 01123333333222222221 222222110
Q ss_pred CcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEE-EeCchhhhhhc--ccceeecccCCH
Q 007339 68 NEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVI-TTRLYRVCRSM--KCKQVAVELLSK 142 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Ili-TtR~~~~~~~~--~~~~~~l~~L~~ 142 (607)
-..+++.++|+|+++... ..+.+...+........+|+ |+....+.... ++..+++.+++.
T Consensus 113 --------------p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~ 178 (472)
T PRK14962 113 --------------PMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISD 178 (472)
T ss_pred --------------hhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccH
Confidence 013567899999998763 23444444433233344443 44333333322 223389999999
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHHHHh
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTVAAS 188 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~a~~ 188 (607)
++....+.+.+......- .++.++.|++.++|- +.++..+-..
T Consensus 179 ~el~~~L~~i~~~egi~i---~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 179 ELIIKRLQEVAEAEGIEI---DREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999998875443333 577889999988654 6676666543
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.45 E-value=5.8e-07 Score=84.94 Aligned_cols=150 Identities=11% Similarity=0.119 Sum_probs=92.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.+.|+|+.|+|||+||+.+++....+ . ..+.++++..... . + ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~-~~~~~i~~~~~~~------~----~------------------~~-- 87 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYG--G-RNARYLDAASPLL------A----F------------------DF-- 87 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhC--C-CcEEEEehHHhHH------H----H------------------hh--
Confidence 34678999999999999999999886422 1 2356666544211 0 0 00
Q ss_pred cCCcEEEEEecCCCccc--ccccccCCCCC-CCCc-EEEEEeCchhhhh--------hccc-ceeecccCCHHHHHHHhH
Q 007339 84 AKEKFVLILDDMWEAFP--LQEIGIPEPSE-ENGC-KLVITTRLYRVCR--------SMKC-KQVAVELLSKQEAFNLFI 150 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~--~~~l~~~~~~~-~~~~-~IliTtR~~~~~~--------~~~~-~~~~l~~L~~~ea~~L~~ 150 (607)
....-++|+||++.... ...+...+... ..+. .|++|++...... ++.. ..+++.++++++-..++.
T Consensus 88 ~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~ 167 (227)
T PRK08903 88 DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALK 167 (227)
T ss_pred cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHH
Confidence 12234789999986632 12232222211 1233 4667766433211 2222 338999999998888777
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhh
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASM 189 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l 189 (607)
+.+......- .++..+.+++...|.+..+..+...+
T Consensus 168 ~~~~~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 168 AAAAERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 7554332222 67889999999999998877766554
No 82
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.44 E-value=4.7e-08 Score=92.34 Aligned_cols=184 Identities=18% Similarity=0.157 Sum_probs=125.8
Q ss_pred hcCCCCceEEEccCCCCc-c----CCccccCCccCcEeecccccCCCCCC--------------cccCCCCCCEEeccCC
Q 007339 351 FVHMNGLKVLNLSHTDIE-V----LPSSISDLTNLRSLLLRWCGRLKRVP--------------SLAKLLALQYLDLEGT 411 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~-~----l~~~~~~l~~L~~L~l~~~~~~~~~~--------------~~~~l~~L~~L~l~~~ 411 (607)
+..+++|+.++||.|.|. . +-.-+.++..|+.|.|.+|.+-..-. -...-++|+++..++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 567889999999999876 2 22346778999999999988654322 1345578999999999
Q ss_pred chhh-----hHHhccCCCCCCeeeccCCcCCcCC----CccccCCCCCCEEEcccCcchhhhhH---HHhhcccccccEE
Q 007339 412 WIEE-----VLECMEMLENLSHLYLSSLQLKKFP----TGILPRLRNLYKLKLSFGNEALRETV---EEAASLSDGLDYF 479 (607)
Q Consensus 412 ~l~~-----l~~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~~L~~L 479 (607)
++.. +-..+...+.|+.+.++.|.+..-. ...+..+++|++|||..|........ +.++.++ +|+++
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El 246 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLREL 246 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheee
Confidence 7763 3345778899999999998764322 12367999999999999876544332 6788889 99999
Q ss_pred EeeecCccccc--cccccccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-----ccCCcccc
Q 007339 480 EGCFSKLKDFN--RYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-----IVLPEDVQ 552 (607)
Q Consensus 480 ~l~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-----~~~~~~L~ 552 (607)
+++.|.+..-- ..... .. ...|+|+.|.+.+|.++..... ..-.+.|.
T Consensus 247 ~l~dcll~~~Ga~a~~~a----------------------l~---~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~ 301 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDA----------------------LK---ESAPSLEVLELAGNEITRDAALALAACMAEKPDLE 301 (382)
T ss_pred cccccccccccHHHHHHH----------------------Hh---ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhH
Confidence 99988875311 11000 00 1126677777777776644322 22356677
Q ss_pred eeeeeeec
Q 007339 553 YLEMIRVD 560 (607)
Q Consensus 553 ~L~l~~~~ 560 (607)
.|+|++|.
T Consensus 302 kLnLngN~ 309 (382)
T KOG1909|consen 302 KLNLNGNR 309 (382)
T ss_pred HhcCCccc
Confidence 77777774
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=1e-05 Score=85.82 Aligned_cols=152 Identities=14% Similarity=0.150 Sum_probs=91.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC------------------CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN------------------KFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
+.+.++|+.|+||||+|+.++..+-.... .|..++.++......++
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd---------------- 102 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGID---------------- 102 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHH----------------
Confidence 46899999999999999999887632100 01112222222211111
Q ss_pred CcccccchHHHHHHH----hcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeC-chhhhhhc--ccceeecc
Q 007339 68 NEDKVRRPGRLLGML----KAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTR-LYRVCRSM--KCKQVAVE 138 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~----~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR-~~~~~~~~--~~~~~~l~ 138 (607)
.++.++... ..+++.++|||+++.+.. ...++..+..-...+++|++|. ...+.... ++..+++.
T Consensus 103 ------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~ 176 (709)
T PRK08691 103 ------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLR 176 (709)
T ss_pred ------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcC
Confidence 122222211 135678999999987643 3334333332223445555554 33333222 22228889
Q ss_pred cCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 139 LLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 139 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
.++.++..+.+.+++......- .++.+..|++.++|.+.-+
T Consensus 177 ~Ls~eeI~~~L~~Il~kEgi~i---d~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 177 NMTAQQVADHLAHVLDSEKIAY---EPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHhCCCHHHH
Confidence 9999999999999886654444 6788999999999988443
No 84
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.44 E-value=4.6e-06 Score=92.95 Aligned_cols=293 Identities=15% Similarity=0.144 Sum_probs=164.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCH---HHHHHHHHHHH------------------
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDL---FKLQTEIATAL------------------ 61 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~---~~~~~~i~~~l------------------ 61 (607)
+...++.|.|.+|+|||++++++......+.+.|-.-.+-........ .+.+++++.++
T Consensus 22 g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~~ll~~~~~~~~~~~~~il~~ 101 (849)
T COG3899 22 GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMGQLLSESDTRILSWRARLLAA 101 (849)
T ss_pred CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence 456789999999999999999999998654222211111122222222 22333333332
Q ss_pred -ccCCC-------------C-C------ccc--cc-----chHHHHHHHhcCCcEEEEEecCCCccc-----ccccccCC
Q 007339 62 -KQSLP-------------E-N------EDK--VR-----RPGRLLGMLKAKEKFVLILDDMWEAFP-----LQEIGIPE 108 (607)
Q Consensus 62 -~~~~~-------------~-~------~~~--~~-----~~~~l~~~~~~~~~~LlVlDdv~~~~~-----~~~l~~~~ 108 (607)
+.... . . .+. .. ....+.......++.++|+||+.-.+. ++.+....
T Consensus 102 ~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~ 181 (849)
T COG3899 102 LGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRI 181 (849)
T ss_pred hcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhc
Confidence 10000 0 0 000 00 111222222356799999999953321 11111111
Q ss_pred C---CCCCCcEEEEEeCchhh-hhh--cccceeecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 109 P---SEENGCKLVITTRLYRV-CRS--MKCKQVAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 109 ~---~~~~~~~IliTtR~~~~-~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
. ......-.+.|.+...- ... .....+.|.+|+..+...+....++..... ..+..+.|+++..|+|+-+
T Consensus 182 ~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~----~~p~~~~i~~kt~GnPfFi 257 (849)
T COG3899 182 AIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL----PAPLLELIFEKTKGNPFFI 257 (849)
T ss_pred chhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc----cchHHHHHHHHhcCCCccH
Confidence 1 00112223334443211 111 122228999999999999999999884222 3467899999999999999
Q ss_pred HHHHHhhcCC------ccHHHHHHHHHHHHhccccCCCCchhhhhhHHhhhcCCChhhHHHHHHHhhcCCCCCccChHHH
Q 007339 183 VTVAASMSGE------EEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCAQYPEDFAIPKDKL 256 (607)
Q Consensus 183 ~~~a~~l~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~l~la~f~~~~~i~~~~l 256 (607)
..+-..+... .+...|+.-..++..- +.. +.+...+..-.++|| ...|+.+...|++... |+...+
T Consensus 258 ~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~----~~~-~~vv~~l~~rl~kL~-~~t~~Vl~~AA~iG~~--F~l~~L 329 (849)
T COG3899 258 EEFLKALYEEGLLVFNFDTGAWQCSIASLGIL----ATT-DAVVEFLAARLQKLP-GTTREVLKAAACIGNR--FDLDTL 329 (849)
T ss_pred HHHHHHHHhCCeeEecCCCcceeccHHhcCCc----hhh-HHHHHHHHHHHhcCC-HHHHHHHHHHHHhCcc--CCHHHH
Confidence 9988877653 3445565444333211 111 224556778889999 8899999999998755 555555
Q ss_pred HHHHHHhCCccccCCchhhHHHHHHHHHHHHHccccccc-----C-CCCeE---EecHHHHHHHHHHhcCC
Q 007339 257 IDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLESA-----E-DDSCV---KMHDLIRDMALRITSKS 318 (607)
Q Consensus 257 ~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~-----~-~~~~~---~~H~lv~~~~~~~~~~~ 318 (607)
...+-. .....+...++.|....++... . ..... -.|+++|+.+.....++
T Consensus 330 a~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 330 AALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 544421 2234455566666666655432 1 11112 46888888886666544
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=1.1e-05 Score=83.21 Aligned_cols=155 Identities=14% Similarity=0.172 Sum_probs=96.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccC------------------CCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEK------------------PNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~------------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
+.+.++|+.|+||||+|+.++...-.. ...+..++.++.+....++++.. +........
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~-Iie~~~~~P-- 112 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKV-ILENSCYLP-- 112 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHH-HHHHHHhcc--
Confidence 478899999999999999998754210 01122355555544434333322 222221100
Q ss_pred CcccccchHHHHHHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEe-Cchhhhhhc--ccceeecccCCH
Q 007339 68 NEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITT-RLYRVCRSM--KCKQVAVELLSK 142 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTt-R~~~~~~~~--~~~~~~l~~L~~ 142 (607)
..++..++|+|+++.... .+.+...+..-....++|++| ....+.... ++..+++.+++.
T Consensus 113 ---------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~ 177 (491)
T PRK14964 113 ---------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPT 177 (491)
T ss_pred ---------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccH
Confidence 035678999999987733 444444444333445555444 444444332 233389999999
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
++..+.+.+.+......- .++.++.|++.++|.+..
T Consensus 178 ~el~~~L~~ia~~Egi~i---~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 178 DKLVEHLVDIAKKENIEH---DEESLKLIAENSSGSMRN 213 (491)
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 999999999887664444 678899999999998753
No 86
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.43 E-value=1.6e-06 Score=89.71 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=105.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|..|+|||.|++.+++..... ..-..++++++ .++...+...++... .......+.+ .
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~-~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~--~ 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESN-FSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEI--C 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHh--c
Confidence 468999999999999999999976432 11223666653 456666666665311 1222333333 2
Q ss_pred CcEEEEEecCCCccc----ccccccCCCC-CCCCcEEEEEeCch---------hhhhhcccce-eecccCCHHHHHHHhH
Q 007339 86 EKFVLILDDMWEAFP----LQEIGIPEPS-EENGCKLVITTRLY---------RVCRSMKCKQ-VAVELLSKQEAFNLFI 150 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~----~~~l~~~~~~-~~~~~~IliTtR~~---------~~~~~~~~~~-~~l~~L~~~ea~~L~~ 150 (607)
+.-+||+||++.... .+++...+.. ...+..||+|+... .+..+..+.. +.+++++.++..+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 345899999976531 2233322221 12344688887632 2223333333 7899999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhh
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASM 189 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l 189 (607)
+.+...... ....++.++.|++.++|.|..+..+...+
T Consensus 286 ~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 286 KEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 988654211 12368899999999999998877665433
No 87
>PRK05642 DNA replication initiation factor; Validated
Probab=98.43 E-value=1.1e-06 Score=82.89 Aligned_cols=152 Identities=14% Similarity=0.191 Sum_probs=93.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|+.|+|||.|++.+++....+ -..++|++... +... ...+.+.+. +
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~------~~~~------------------~~~~~~~~~-~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAE------LLDR------------------GPELLDNLE-Q 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHH------HHhh------------------hHHHHHhhh-h
Confidence 578999999999999999999876532 23477887543 1111 012233332 2
Q ss_pred CcEEEEEecCCCc---ccccc-cccCCCC-CCCCcEEEEEeCchhh---------hhhcccce-eecccCCHHHHHHHhH
Q 007339 86 EKFVLILDDMWEA---FPLQE-IGIPEPS-EENGCKLVITTRLYRV---------CRSMKCKQ-VAVELLSKQEAFNLFI 150 (607)
Q Consensus 86 ~~~LlVlDdv~~~---~~~~~-l~~~~~~-~~~~~~IliTtR~~~~---------~~~~~~~~-~~l~~L~~~ea~~L~~ 150 (607)
- =+||+||++.. ..|++ +...+.. ...|..||+|++.... ..++.+.. +++++++.++-.+++.
T Consensus 98 ~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 Y-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred C-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 2 26889999744 23322 3333321 1235678888874332 11222333 7899999999999998
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhh
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASM 189 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l 189 (607)
+++......- .++..+.|++.+.|-.-.+..+-..+
T Consensus 177 ~ka~~~~~~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRGLHL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6664432222 56888899999888876655554433
No 88
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=7.8e-06 Score=81.17 Aligned_cols=154 Identities=12% Similarity=0.143 Sum_probs=97.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccc---CCCCCCeEEEEEe-CCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQE---KPNKFNDVIWVTV-SQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~---~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (607)
.+...++|+.|+|||++|+.++...-. .+.++|...|... +.....+++. .+.+.+....
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~~~~~~~~~p--------------- 89 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-NIIEEVNKKP--------------- 89 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-HHHHHHhcCc---------------
Confidence 456789999999999999999987632 1245555455442 2222333422 2333332210
Q ss_pred HHhcCCcEEEEEecCCCc--ccccccccCCCCCCCCcEEEEEeCchhh-hhh--cccceeecccCCHHHHHHHhHhhhCC
Q 007339 81 MLKAKEKFVLILDDMWEA--FPLQEIGIPEPSEENGCKLVITTRLYRV-CRS--MKCKQVAVELLSKQEAFNLFIDGVGS 155 (607)
Q Consensus 81 ~~~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IliTtR~~~~-~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~ 155 (607)
..+++.++|+|+++.+ ..+..+...+..-..++.+|++|.+... ... .++..+++.+++.++..+.+.+.+..
T Consensus 90 --~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~ 167 (313)
T PRK05564 90 --YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND 167 (313)
T ss_pred --ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC
Confidence 0356788888988766 3455666566554567777777764432 222 22334899999999999888776532
Q ss_pred CCCCCccchHHHHHHHHHHcCCchHHHH
Q 007339 156 SILQVPILNKEIINEVVEECGCLPLAIV 183 (607)
Q Consensus 156 ~~~~~~~~~~~~~~~i~~~~~g~PLal~ 183 (607)
- .++.++.++..++|.|..+.
T Consensus 168 ~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 168 I-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred C-------CHHHHHHHHHHcCCCHHHHH
Confidence 1 34567889999999886543
No 89
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.37 E-value=4.9e-06 Score=79.01 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=109.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCC---CCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNK---FNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
.+-+.|+|.+|+|||+++++++..+...... .-.|+.|.+...++...++..|+.+++.+.................
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999887543111 1148888888899999999999999999876665555444455555
Q ss_pred HhcCCcEEEEEecCCCcc-----ccccccc---CCCCCCCCcEEEEEeCc--------hhhhhhcccceeecccCC-HHH
Q 007339 82 LKAKEKFVLILDDMWEAF-----PLQEIGI---PEPSEENGCKLVITTRL--------YRVCRSMKCKQVAVELLS-KQE 144 (607)
Q Consensus 82 ~~~~~~~LlVlDdv~~~~-----~~~~l~~---~~~~~~~~~~IliTtR~--------~~~~~~~~~~~~~l~~L~-~~e 144 (607)
+..-+--+||||++.+.- .-.++.. .+.+.-.-+-|.+-|++ .+++.+... +.++.-. ++|
T Consensus 141 lr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~--~~Lp~W~~d~e 218 (302)
T PF05621_consen 141 LRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEP--FELPRWELDEE 218 (302)
T ss_pred HHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCC--ccCCCCCCCcH
Confidence 555577899999997751 1111211 12111224456677763 333333322 4444443 234
Q ss_pred HHHHhHhhh---CCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 145 AFNLFIDGV---GSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 145 a~~L~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
...|+...- .=...+ ....++.+..|++.++|+.=-
T Consensus 219 f~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 219 FRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchHH
Confidence 455544332 111111 123678899999999998643
No 90
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=8.1e-06 Score=82.54 Aligned_cols=160 Identities=9% Similarity=0.036 Sum_probs=85.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCC-----CCCcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSL-----PENEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 79 (607)
.+.+.++|++|+|||++|+.++...-..... + .+......++.+...-..+. ....-..+.++.+.
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~----~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~ 106 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPD-----E----PGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELV 106 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----C----CCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHH
Confidence 4568899999999999999998765321000 0 00111111111111110000 00000011122222
Q ss_pred HHHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCc-hhhhhhc--ccceeecccCCHHHHHHHhH
Q 007339 80 GMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRL-YRVCRSM--KCKQVAVELLSKQEAFNLFI 150 (607)
Q Consensus 80 ~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~-~~~~~~~--~~~~~~l~~L~~~ea~~L~~ 150 (607)
+... .+++.++|+|+++.+.. ...+...+..-..+..+|++|.+ ..+.... ++..+.+.+++.++..+.+.
T Consensus 107 ~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 107 TIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLV 186 (394)
T ss_pred HHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHH
Confidence 2221 35667899999998832 23333333322334545555544 3333332 23348999999999999887
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
+..+. .++.+..+++.++|.|..
T Consensus 187 ~~~~~--------~~~~a~~la~~s~G~~~~ 209 (394)
T PRK07940 187 RRDGV--------DPETARRAARASQGHIGR 209 (394)
T ss_pred HhcCC--------CHHHHHHHHHHcCCCHHH
Confidence 54432 346688899999999864
No 91
>PLN03150 hypothetical protein; Provisional
Probab=98.36 E-value=7.3e-07 Score=96.67 Aligned_cols=106 Identities=20% Similarity=0.100 Sum_probs=85.2
Q ss_pred cCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcc
Q 007339 379 NLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLS 456 (607)
Q Consensus 379 ~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 456 (607)
.++.|+|++|.+...+| .+.++++|+.|+|++|+++ .+|..++.+++|+.|+|++|++++..|..++++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47888999998888888 8999999999999999988 788889999999999999999987777777999999999999
Q ss_pred cCcchhhhhHHHhhcc-cccccEEEeeecCc
Q 007339 457 FGNEALRETVEEAASL-SDGLDYFEGCFSKL 486 (607)
Q Consensus 457 ~~~~~~~~~~~~l~~l-~~~L~~L~l~~~~~ 486 (607)
+|+... ..+..+..+ . ++..+++..|..
T Consensus 499 ~N~l~g-~iP~~l~~~~~-~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSG-RVPAALGGRLL-HRASFNFTDNAG 527 (623)
T ss_pred CCcccc-cCChHHhhccc-cCceEEecCCcc
Confidence 886443 333445443 4 677777776653
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.36 E-value=9.4e-06 Score=82.59 Aligned_cols=159 Identities=11% Similarity=0.140 Sum_probs=94.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCC-------------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKP-------------------NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP 66 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 66 (607)
+.+.++|++|+|||++|+.++....... .+++ +++++........+ .+.+...+....
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~-~~~l~~~~~~~p- 113 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-VIEIDAASNNGVDD-IREILDNVKYAP- 113 (355)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEeeccccCCHHH-HHHHHHHHhcCc-
Confidence 5678999999999999999988864210 0122 33333322112211 222222222100
Q ss_pred CCcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchh-hhhhc--ccceeecccCC
Q 007339 67 ENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYR-VCRSM--KCKQVAVELLS 141 (607)
Q Consensus 67 ~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~-~~~~~--~~~~~~l~~L~ 141 (607)
..+++.++|+|+++... ....+...+......+.+|++|.+.. +.... ....+++.+++
T Consensus 114 ----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~ 177 (355)
T TIGR02397 114 ----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIP 177 (355)
T ss_pred ----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCC
Confidence 02456799999998773 34444444433334556666665433 22222 22338889999
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVA 186 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a 186 (607)
.++..+.+..++......- .++.+..+++.++|.|..+....
T Consensus 178 ~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 178 LEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHHH
Confidence 9999999998775543333 56888999999999886654443
No 93
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=5.8e-06 Score=87.26 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=92.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCC------------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKP------------------NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
+.+.++|+.|+||||+|+.++...-... ..|..+++++.......+++ +.+........
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~i-r~l~~~~~~~p-- 115 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAM-RELLDNAQYAP-- 115 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHH-HHHHHHHhhCc--
Confidence 4568999999999999999988873210 01222333332222222221 12222211100
Q ss_pred CcccccchHHHHHHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEE-EeCchhhhhhcc--cceeecccCCH
Q 007339 68 NEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVI-TTRLYRVCRSMK--CKQVAVELLSK 142 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~Ili-TtR~~~~~~~~~--~~~~~l~~L~~ 142 (607)
..+++.++|+|+++.+.. ...+...+..-...+.+|+ ||....+..... +..++++.++.
T Consensus 116 ---------------~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~ 180 (527)
T PRK14969 116 ---------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPP 180 (527)
T ss_pred ---------------ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCH
Confidence 035678999999987743 3444444433233444554 444433332222 23389999999
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH-HHHHH
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL-AIVTV 185 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 185 (607)
++..+.+.+.+....... .++.++.|++.++|.+. |+..+
T Consensus 181 ~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 181 PLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999988875543333 66788999999999774 44444
No 94
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.34 E-value=1.4e-06 Score=76.18 Aligned_cols=106 Identities=16% Similarity=0.129 Sum_probs=61.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.+.|+|++|+|||++|+.+++..... ...++++++.+..........+... ..........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 81 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHF-------------LVRLLFELAE 81 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhHHHHHhhhh-------------hHhHHHHhhc
Confidence 45789999999999999999999997521 2347788766543322222111110 0011111122
Q ss_pred cCCcEEEEEecCCCc--cc---ccccccCCCCC---CCCcEEEEEeCchh
Q 007339 84 AKEKFVLILDDMWEA--FP---LQEIGIPEPSE---ENGCKLVITTRLYR 125 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~--~~---~~~l~~~~~~~---~~~~~IliTtR~~~ 125 (607)
..++.++|+|+++.. .. +.......... ..+..||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 457899999999865 11 22222222211 35678888888543
No 95
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.33 E-value=3.8e-07 Score=65.93 Aligned_cols=57 Identities=33% Similarity=0.474 Sum_probs=30.8
Q ss_pred CceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCc
Q 007339 356 GLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTW 412 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 412 (607)
+|+.|++++|.++.+|. .|..+++|++|++++|.+....+ .+.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666555553 44555555555555555444333 45555555555555553
No 96
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=5.9e-06 Score=82.36 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=97.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC-CCCeEEEEEeCCCCCHHHHHHHHHHHHc-------cCCCCC------cc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN-KFNDVIWVTVSQPLDLFKLQTEIATALK-------QSLPEN------ED 70 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~-------~~~~~~------~~ 70 (607)
...+.|+|+.|+||||+|..++...-.... .+... ....+..-...++.+...-. .+.... .-
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I 121 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAI 121 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccC
Confidence 346899999999999999999998753110 01111 11111112234444443311 110000 01
Q ss_pred cccchHHHHHHHh----cCCcEEEEEecCCCccc--ccccccCCCCC-CCCcEEEEEeCchhhhhhc--ccceeecccCC
Q 007339 71 KVRRPGRLLGMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSE-ENGCKLVITTRLYRVCRSM--KCKQVAVELLS 141 (607)
Q Consensus 71 ~~~~~~~l~~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~-~~~~~IliTtR~~~~~~~~--~~~~~~l~~L~ 141 (607)
..+.+..+.+.+. .++..++|+|+++.+.. ...+...+..- ....-|++|++...+.... ++..+++.+++
T Consensus 122 ~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~ 201 (351)
T PRK09112 122 TVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLD 201 (351)
T ss_pred CHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCC
Confidence 1233444444443 35778999999998732 33333332221 2233456665554443322 23339999999
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
.++..+++.+...... ..++.+..+++.++|.|.....+
T Consensus 202 ~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 202 DDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred HHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999987432211 24667889999999999754433
No 97
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.33 E-value=6.7e-08 Score=100.01 Aligned_cols=108 Identities=27% Similarity=0.351 Sum_probs=61.0
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+..+++|..|++..|.|..+...+..+.+|++|++++|.+. .+..+..+..|+.|++++|.+..+. .+..+++|+.++
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLD 168 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccchhhccchhhheeccCcchhcc-CCccchhhhccc
Confidence 34556666666666666655543556666666666665533 2334455555666666666655442 234456666666
Q ss_pred ccCCcCCcCCC-ccccCCCCCCEEEcccCcch
Q 007339 431 LSSLQLKKFPT-GILPRLRNLYKLKLSFGNEA 461 (607)
Q Consensus 431 l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~ 461 (607)
+++|.+..+.. . ...+.+|+.+++.+|...
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 66666665544 2 245566666666655443
No 98
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=4.4e-06 Score=88.90 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=95.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----CCcccccchHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP----ENEDKVRRPGRLLGM 81 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~ 81 (607)
..+.++|+.|+||||+|+.++..+-.. ..+. ..+......+..|...-..+.. ......+.++.+.+.
T Consensus 39 hAyLf~Gp~GvGKTTlAr~lAk~L~c~-~~~~-------~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~ 110 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIARLLAKGLNCE-TGIT-------ATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDN 110 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhc-cCCC-------CCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHH
Confidence 346899999999999999999887421 0000 0111112233333221110000 000111222333332
Q ss_pred Hh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcE-EEEEeCchhhhhhc--ccceeecccCCHHHHHHHhHhh
Q 007339 82 LK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCK-LVITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 82 ~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~ 152 (607)
.. .++..++|||+++.+. ....++..+-.-....+ |++||....+.... ++..+++.+++.++..+.+.++
T Consensus 111 ~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~i 190 (647)
T PRK07994 111 VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHI 190 (647)
T ss_pred HHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHH
Confidence 21 4678899999999873 34444333332223333 55555555544322 2344999999999999999988
Q ss_pred hCCCCCCCccchHHHHHHHHHHcCCchH-HHHHH
Q 007339 153 VGSSILQVPILNKEIINEVVEECGCLPL-AIVTV 185 (607)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 185 (607)
+....... .++....|++.++|.+. |+.++
T Consensus 191 l~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 191 LQAEQIPF---EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 75443333 67788899999999775 44444
No 99
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.7e-08 Score=89.63 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=108.1
Q ss_pred hhcCCCCceEEEccCCCCc-cCCccccCCccCcEeecccccCCCCCC---cccCCCCCCEEeccCCchh-hhH-HhccC-
Q 007339 350 FFVHMNGLKVLNLSHTDIE-VLPSSISDLTNLRSLLLRWCGRLKRVP---SLAKLLALQYLDLEGTWIE-EVL-ECMEM- 422 (607)
Q Consensus 350 ~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~-~l~-~~~~~- 422 (607)
++..|.+|+.|.+.++.+. .+-..+.+-.+|+.++++.|...+... -+.+++.|..|+++||.+. +.- ..+.+
T Consensus 205 iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 205 ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 4677888999999988877 444457778889999999887666544 4778899999999999554 221 12222
Q ss_pred CCCCCeeeccCCc--CC-cCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCC
Q 007339 423 LENLSHLYLSSLQ--LK-KFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGR 499 (607)
Q Consensus 423 l~~L~~L~l~~~~--l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~ 499 (607)
-++|+.|+|+|+. +. .-......++++|..|||+.|.......+..+-+++ .|++|+++-|-...-...+.....+
T Consensus 285 se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~-~L~~lSlsRCY~i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 285 SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN-YLQHLSLSRCYDIIPETLLELNSKP 363 (419)
T ss_pred chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc-hheeeehhhhcCCChHHeeeeccCc
Confidence 2678889998873 22 111222468999999999998887777778888888 9999999877543333333333333
Q ss_pred cceeEEEEe
Q 007339 500 GSKNYCLVL 508 (607)
Q Consensus 500 ~L~~l~l~~ 508 (607)
.|..|++..
T Consensus 364 sl~yLdv~g 372 (419)
T KOG2120|consen 364 SLVYLDVFG 372 (419)
T ss_pred ceEEEEecc
Confidence 355555543
No 100
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2e-05 Score=83.21 Aligned_cols=174 Identities=12% Similarity=0.152 Sum_probs=96.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----CcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 80 (607)
.+.+.++|+.|+||||+|+.+++..-.. ...+ .........+..|...-..+... .....+.++.+.+
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~-~~~~-------~~pCg~C~sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~ 109 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCE-TAPT-------GEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKE 109 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcccc-CCCC-------CCCCcccHHHHHHhcCCCCceEEEecccccCHHHHHHHHH
Confidence 4678899999999999999999887421 0000 00111112222222111100000 0000111122211
Q ss_pred HH----hcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEe-Cchhhhhhc--ccceeecccCCHHHHHHHhHh
Q 007339 81 ML----KAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITT-RLYRVCRSM--KCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~----~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTt-R~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~ 151 (607)
.. ..+++.++|||+++.+. ....+...+..-.....+|++| ....+.... ++..+++.+++.++..+.+.+
T Consensus 110 ~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~ 189 (624)
T PRK14959 110 AIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTK 189 (624)
T ss_pred HHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHH
Confidence 11 13567899999998873 3444544443222344455544 434443222 233489999999999999988
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCch-HHHHHHHHhh
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLP-LAIVTVAASM 189 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~a~~l 189 (607)
.+......- .++.++.|++.++|.+ .|+..+...+
T Consensus 190 il~~egi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 190 VLGREGVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 775543333 6788999999999964 6777665443
No 101
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.32 E-value=6.8e-06 Score=84.83 Aligned_cols=159 Identities=17% Similarity=0.222 Sum_probs=99.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|++|+|||.|++.+++..... ..-..++|+++ .++...+...+... ......+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~------~~~~~~~~~~~~~~---------~~~~~~~~~~-- 198 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSS------EKFTNDFVNALRNN---------KMEEFKEKYR-- 198 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEH------HHHHHHHHHHHHcC---------CHHHHHHHHH--
Confidence 568999999999999999999987532 11123677753 33444455554421 1223333332
Q ss_pred CcEEEEEecCCCcccc----cccccCCCCC-CCCcEEEEEeCchh---------hhhhcccce-eecccCCHHHHHHHhH
Q 007339 86 EKFVLILDDMWEAFPL----QEIGIPEPSE-ENGCKLVITTRLYR---------VCRSMKCKQ-VAVELLSKQEAFNLFI 150 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~~----~~l~~~~~~~-~~~~~IliTtR~~~---------~~~~~~~~~-~~l~~L~~~ea~~L~~ 150 (607)
+.-+|||||++..... +++...+... ..+..+|+||.... +..++.... +++++.+.++-.+++.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 2348999999865321 1222222111 23456788876321 222333333 8899999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
+.+......- .++.++.|++.+.|..-.+.-+
T Consensus 279 ~~~~~~~~~l---~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 279 KKAEEEGLEL---PDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHH
Confidence 9987654443 6788999999999887765544
No 102
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=9.4e-06 Score=86.23 Aligned_cols=170 Identities=13% Similarity=0.121 Sum_probs=93.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC-CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----CcccccchHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN-KFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRPGRLLG 80 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 80 (607)
..+.++|+.|+||||+|+.++..+-.... ...++.. .+......++.|...-..+... .....+.++.+..
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~ 114 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLE 114 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHH
Confidence 56789999999999999999877632100 0011111 1111222333332111110000 0011112223332
Q ss_pred HHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEE-EEeCchhhhhhc--ccceeecccCCHHHHHHHhHh
Q 007339 81 MLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLV-ITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Il-iTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~ 151 (607)
... .++..++|||+++.+. ....+...+..-....++| +||....+.... ++..++++.++.++..+.+.+
T Consensus 115 ~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~ 194 (618)
T PRK14951 115 QAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQ 194 (618)
T ss_pred HHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHH
Confidence 221 3466799999999873 3444444443323344444 554444443222 233389999999999999998
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
.+....... .++.+..|++.++|.+.-+
T Consensus 195 i~~~egi~i---e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 195 VLAAENVPA---EPQALRLLARAARGSMRDA 222 (618)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 886654443 6788899999999977443
No 103
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.30 E-value=1.5e-05 Score=86.77 Aligned_cols=151 Identities=17% Similarity=0.185 Sum_probs=85.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH-
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML- 82 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~- 82 (607)
..+.+.|+|++|+||||+|+.+++... ..| ..+++.. ....++ +.++. ...+.+
T Consensus 51 ~~~slLL~GPpGtGKTTLA~aIA~~~~---~~f---~~lna~~-~~i~di-r~~i~-----------------~a~~~l~ 105 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARIIANHTR---AHF---SSLNAVL-AGVKDL-RAEVD-----------------RAKERLE 105 (725)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhc---Ccc---eeehhhh-hhhHHH-HHHHH-----------------HHHHHhh
Confidence 455788999999999999999998764 223 1222111 011111 11111 111111
Q ss_pred hcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEE--eCchh--hhhhc--ccceeecccCCHHHHHHHhHhhhC
Q 007339 83 KAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVIT--TRLYR--VCRSM--KCKQVAVELLSKQEAFNLFIDGVG 154 (607)
Q Consensus 83 ~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliT--tR~~~--~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~ 154 (607)
..+++.++|||+++... ..+.+...+. .+..++|+ |.+.. +.... +...+.+++++.++..+++.+.+.
T Consensus 106 ~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 106 RHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence 12467899999998763 2333433332 34445553 33321 11111 223389999999999999988774
Q ss_pred CC----CCCCccchHHHHHHHHHHcCCchHHH
Q 007339 155 SS----ILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 155 ~~----~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
.. ........++..+.|++.+.|....+
T Consensus 183 ~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 183 DKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 21 01111226788899999999875433
No 104
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.3e-05 Score=84.18 Aligned_cols=156 Identities=13% Similarity=0.108 Sum_probs=93.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccC------------------CCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEK------------------PNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~------------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
..+.++|+.|+||||+|+.++...-.. ...+..++.++......++++ +.+...+....
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~i-R~l~~~~~~~p-- 115 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDT-RELLDNIPYAP-- 115 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHH-HHHHHHHhhcc--
Confidence 457899999999999999999877321 011223444444333333332 22333222110
Q ss_pred CcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEE-EEeCchhhhhhcc--cceeecccCCH
Q 007339 68 NEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLV-ITTRLYRVCRSMK--CKQVAVELLSK 142 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Il-iTtR~~~~~~~~~--~~~~~l~~L~~ 142 (607)
..++..++|||+++.+. ....+...+..-...+++| +||....+..... +..+++++++.
T Consensus 116 ---------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~ 180 (509)
T PRK14958 116 ---------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPP 180 (509)
T ss_pred ---------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCH
Confidence 13567899999999773 3344443333223344455 4554444433222 23388999999
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
++..+.+.+.+......- .++.+..|++.++|-+.-+
T Consensus 181 ~~i~~~l~~il~~egi~~---~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEF---ENAALDLLARAANGSVRDA 217 (509)
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHH
Confidence 999988888875553333 6678889999999987433
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.29 E-value=1.7e-06 Score=80.68 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=102.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCe-EEEEEeCCCCCHHHHHHHHH--HHHccCCCCCcccccchHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFND-VIWVTVSQPLDLFKLQTEIA--TALKQSLPENEDKVRRPGRLLG 80 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~--~~l~~~~~~~~~~~~~~~~l~~ 80 (607)
..+....+||+|.|||+-|+.++...--. +-|.+ +.-.+++....+.-+-..+- .++...........
T Consensus 56 ~lp~~LFyGPpGTGKTStalafar~L~~~-~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~-------- 126 (346)
T KOG0989|consen 56 ILPHYLFYGPPGTGKTSTALAFARALNCE-QLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYP-------- 126 (346)
T ss_pred CCceEEeeCCCCCcHhHHHHHHHHHhcCc-cccccchhhhcccccccccchhhhhcCHHHHhhccccccCCC--------
Confidence 56778999999999999999998887432 22333 55455554433221111110 11111000000000
Q ss_pred HHhcCCcEEEEEecCCCc--ccccccccCCCCCCCCcE-EEEEeCchhhhhhcccce--eecccCCHHHHHHHhHhhhCC
Q 007339 81 MLKAKEKFVLILDDMWEA--FPLQEIGIPEPSEENGCK-LVITTRLYRVCRSMKCKQ--VAVELLSKQEAFNLFIDGVGS 155 (607)
Q Consensus 81 ~~~~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~~~~~--~~l~~L~~~ea~~L~~~~~~~ 155 (607)
...--++|||+++.+ +.|..++.........++ |+||+--..+........ +..++|.+++.++-+..++..
T Consensus 127 ---~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~ 203 (346)
T KOG0989|consen 127 ---CPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK 203 (346)
T ss_pred ---CCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH
Confidence 233478999999988 457666655554444444 566666544444332222 889999999999999999977
Q ss_pred CCCCCccchHHHHHHHHHHcCCc-hHHHHHH
Q 007339 156 SILQVPILNKEIINEVVEECGCL-PLAIVTV 185 (607)
Q Consensus 156 ~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 185 (607)
+...- .++..+.|++.++|- --|+..+
T Consensus 204 E~v~~---d~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 204 EGVDI---DDDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred hCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 75555 778999999999886 3444333
No 106
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.29 E-value=2.7e-05 Score=71.27 Aligned_cols=181 Identities=18% Similarity=0.207 Sum_probs=112.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcc-cccc-hHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENED-KVRR-PGRLLG 80 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~-~~~l~~ 80 (607)
++-+++.|+|.-|.|||.+++.+...+.. .-..++. ...+..+...+...++..+..+...... .... ...+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~---d~~~~v~-i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNE---DQVAVVV-IDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCC---CceEEEE-ecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 45569999999999999999966555531 1112322 2334456778888888888773222211 1122 222333
Q ss_pred HHhcCCc-EEEEEecCCCcc--cccccc---cCCCCCCCCcEEEEEeCch-------hhhhhcc--cce-eecccCCHHH
Q 007339 81 MLKAKEK-FVLILDDMWEAF--PLQEIG---IPEPSEENGCKLVITTRLY-------RVCRSMK--CKQ-VAVELLSKQE 144 (607)
Q Consensus 81 ~~~~~~~-~LlVlDdv~~~~--~~~~l~---~~~~~~~~~~~IliTtR~~-------~~~~~~~--~~~-~~l~~L~~~e 144 (607)
...++++ ..+++|+..+.. ..+.++ ..-.....--+|+.....+ ...+... ... |++.+++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 3346777 999999987662 222221 1111111112344433311 1111111 222 8999999999
Q ss_pred HHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 007339 145 AFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAA 187 (607)
Q Consensus 145 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~ 187 (607)
...++..+.+....+++...++....|.+...|+|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 9999999998776666777889999999999999999988764
No 107
>PRK06620 hypothetical protein; Validated
Probab=98.29 E-value=3.4e-06 Score=78.19 Aligned_cols=136 Identities=13% Similarity=0.045 Sum_probs=84.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|||++|+|||+|++.+++... . .++.... . . . +.+ +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~---~-----~~~~~~~--~-------------~------~---------~~~--~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN---A-----YIIKDIF--F-------------N------E---------EIL--E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC---C-----EEcchhh--h-------------c------h---------hHH--h
Confidence 6699999999999999999877753 1 2222000 0 0 0 001 1
Q ss_pred CcEEEEEecCCCcccccccccCCCC-CCCCcEEEEEeCchhh-------hhhcccce-eecccCCHHHHHHHhHhhhCCC
Q 007339 86 EKFVLILDDMWEAFPLQEIGIPEPS-EENGCKLVITTRLYRV-------CRSMKCKQ-VAVELLSKQEAFNLFIDGVGSS 156 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~~~~l~~~~~~-~~~~~~IliTtR~~~~-------~~~~~~~~-~~l~~L~~~ea~~L~~~~~~~~ 156 (607)
..-++++||++..++ ..+...+.. ...|..||+|++..+. ..++.+.. ++++++++++-..++.+.+...
T Consensus 85 ~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 85 KYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred cCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 235788999985432 122222110 1345689999984333 22334333 8999999999999888887544
Q ss_pred CCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 157 ILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 157 ~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
...- .+++++.|++.+.|-.-.+.-+
T Consensus 164 ~l~l---~~ev~~~L~~~~~~d~r~l~~~ 189 (214)
T PRK06620 164 SVTI---SRQIIDFLLVNLPREYSKIIEI 189 (214)
T ss_pred CCCC---CHHHHHHHHHHccCCHHHHHHH
Confidence 3233 6788899999888776554443
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=8e-06 Score=83.68 Aligned_cols=175 Identities=11% Similarity=0.132 Sum_probs=97.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEE-eCCCCCHHHHHHHHHHHHccCCC---C-CcccccchHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVT-VSQPLDLFKLQTEIATALKQSLP---E-NEDKVRRPGRLLG 80 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~---~-~~~~~~~~~~l~~ 80 (607)
..+.++|+.|+||||+|+.++....-. ..++...|.. ...+......+..+......... . .....+.+..+.+
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~a~~l~c~-~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~ 117 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRE 117 (397)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhcCC-CCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHH
Confidence 458899999999999999999887432 1111111110 01111112223333222111100 0 0011122333333
Q ss_pred HHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEe-Cchhhhhhcc--cceeecccCCHHHHHHHhHh
Q 007339 81 MLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITT-RLYRVCRSMK--CKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTt-R~~~~~~~~~--~~~~~l~~L~~~ea~~L~~~ 151 (607)
.+. .+++.++|+|+++... .++.+...+......+.+|++| +...+..... ...+++.+++.++..+.+.+
T Consensus 118 ~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~ 197 (397)
T PRK14955 118 NVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQG 197 (397)
T ss_pred HHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 331 3567899999998774 3555555554434455555544 4444433222 22389999999999999988
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPLAIVT 184 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 184 (607)
.+......- .++.++.|++.++|.+--+..
T Consensus 198 ~~~~~g~~i---~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 198 ICEAEGISV---DADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 875443333 678899999999998754433
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=9.7e-06 Score=85.06 Aligned_cols=171 Identities=13% Similarity=0.134 Sum_probs=93.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----CcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 80 (607)
.+.+.++|+.|+||||+|+.++...-.. + |... .+......++.+.......... .....+.++.+.+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-~------~~~~-~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~ 109 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCL-N------PKDG-DCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIID 109 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCC-C------CCCC-CCCcccHHHHHHHcCCCCceEEeccccccCHHHHHHHHH
Confidence 4578899999999999999999887422 1 1110 1111122222222211111000 0001111222222
Q ss_pred HHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEE-EEeCchhhhhhc--ccceeecccCCHHHHHHHhHh
Q 007339 81 MLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLV-ITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Il-iTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~ 151 (607)
... .+++.++|+|+++.+. ....+...+..-.....+| +|+....+.... ++..+++.+++.++....+.+
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKS 189 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHH
Confidence 221 2345679999998763 3344444333222334444 455544443222 233489999999999999998
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPL-AIVTVA 186 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~a 186 (607)
.+......- .++.++.+++.++|.+. |+..+-
T Consensus 190 il~kegi~I---s~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 190 IAKKEKIKI---EDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 875543333 56788999999999664 444443
No 110
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.26 E-value=2.1e-05 Score=71.34 Aligned_cols=147 Identities=20% Similarity=0.194 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
....+.+|||+|+||||||..+++.... .| .+.+........++ ..++. .+
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~---~~---~~~sg~~i~k~~dl-~~il~---------------------~l- 99 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGV---NF---KITSGPAIEKAGDL-AAILT---------------------NL- 99 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT-----E---EEEECCC--SCHHH-HHHHH---------------------T--
T ss_pred CcceEEEECCCccchhHHHHHHHhccCC---Ce---EeccchhhhhHHHH-HHHHH---------------------hc-
Confidence 4567899999999999999999999863 22 33333211111111 11111 11
Q ss_pred cCCcEEEEEecCCCccc-cccc--------cc--CCCC----------CCCCcEEEEEeCchhhhhhcc--cce-eeccc
Q 007339 84 AKEKFVLILDDMWEAFP-LQEI--------GI--PEPS----------EENGCKLVITTRLYRVCRSMK--CKQ-VAVEL 139 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~-~~~l--------~~--~~~~----------~~~~~~IliTtR~~~~~~~~~--~~~-~~l~~ 139 (607)
+++.+|++|.+..... .+++ .. .... ..+-+-|=-|||.-.+..... ... .+++.
T Consensus 100 -~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~ 178 (233)
T PF05496_consen 100 -KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEF 178 (233)
T ss_dssp --TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE---
T ss_pred -CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhc
Confidence 2455777788876521 1111 00 0000 012334557888544433332 222 47999
Q ss_pred CCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 007339 140 LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIV 183 (607)
Q Consensus 140 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 183 (607)
.+.+|-.+++.+.+..-...- .++.+..|++.+.|-|.-..
T Consensus 179 Y~~~el~~Iv~r~a~~l~i~i---~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 179 YSEEELAKIVKRSARILNIEI---DEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp -THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCc---CHHHHHHHHHhcCCChHHHH
Confidence 999999999998886654444 77899999999999996433
No 111
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=2.5e-05 Score=77.24 Aligned_cols=163 Identities=16% Similarity=0.166 Sum_probs=88.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----C---CcccccchHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP----E---NEDKVRRPGR 77 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~~~~~ 77 (607)
.+.+.++|+.|+|||++|+.++...--.... + ..+..-...++.+...-..+.. . ..-..+.+++
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQ-G-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCC-C-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 4568899999999999999999887432100 0 0011111222222211110000 0 0011122333
Q ss_pred HHHHHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCc-hhhhhhcc--cceeecccCCHHHHHHH
Q 007339 78 LLGMLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRL-YRVCRSMK--CKQVAVELLSKQEAFNL 148 (607)
Q Consensus 78 l~~~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~-~~~~~~~~--~~~~~l~~L~~~ea~~L 148 (607)
+.+.+. .+++.++|||+++.+. ....+...+-.-..++.+|++|.+ ..+..... +..+.+.+++.+++.+.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~ 173 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQW 173 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHH
Confidence 333222 2456667889999873 344443333322234555555554 34443332 33389999999999999
Q ss_pred hHhhhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 149 FIDGVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
+.+..+.. .++.+..++..++|.|...
T Consensus 174 L~~~~~~~-------~~~~~~~~l~la~Gsp~~A 200 (328)
T PRK05707 174 LQQALPES-------DERERIELLTLAGGSPLRA 200 (328)
T ss_pred HHHhcccC-------ChHHHHHHHHHcCCCHHHH
Confidence 98765221 3455677889999999753
No 112
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.24 E-value=1.6e-05 Score=87.66 Aligned_cols=156 Identities=12% Similarity=0.034 Sum_probs=92.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC--------------------CCCeEEEEEeCCCCCHHHHHHHHHHHHccCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN--------------------KFNDVIWVTVSQPLDLFKLQTEIATALKQSL 65 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 65 (607)
+.+.++|+.|+||||+|+.+++.+--... .+..+++++......++++.. +.+.+..
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~-- 114 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARE-LRERAFF-- 114 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHH-HHHHHHh--
Confidence 45789999999999999999988742100 011122332222112222211 1111110
Q ss_pred CCCcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEE-EEeCchhhhhhc--ccceeecccC
Q 007339 66 PENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLV-ITTRLYRVCRSM--KCKQVAVELL 140 (607)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Il-iTtR~~~~~~~~--~~~~~~l~~L 140 (607)
.-..++..++|||+++.+. ..+.|+..+..-...+.+| +|+....+.... ++..|++..+
T Consensus 115 ---------------~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l 179 (824)
T PRK07764 115 ---------------APAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLV 179 (824)
T ss_pred ---------------chhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCC
Confidence 0013567889999999883 3444444444333344444 555544554433 2444899999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
+.++..+.+.+.+....... .++.+..|++.++|.+..+
T Consensus 180 ~~~~l~~~L~~il~~EGv~i---d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 180 PPEVMRGYLERICAQEGVPV---EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 99999999988875543333 5678889999999987433
No 113
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=1.3e-05 Score=82.87 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=99.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|++|+|||.||..+++..... ..-..+.|+++ .++...+...+... ......+.+ ..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~---------~~~~f~~~~-~~ 193 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG---------KLNEFREKY-RK 193 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc---------cHHHHHHHH-Hh
Confidence 469999999999999999999987532 11124777764 34555555555421 112233333 22
Q ss_pred CcEEEEEecCCCccc---c-cccccCCCC-CCCCcEEEEEeC-chhh--------hhhcccce-eecccCCHHHHHHHhH
Q 007339 86 EKFVLILDDMWEAFP---L-QEIGIPEPS-EENGCKLVITTR-LYRV--------CRSMKCKQ-VAVELLSKQEAFNLFI 150 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~---~-~~l~~~~~~-~~~~~~IliTtR-~~~~--------~~~~~~~~-~~l~~L~~~ea~~L~~ 150 (607)
+.-+||+||++.... . +++...+.. ...+..||+||. .+.. ..++.+.. +++++.+.+.-.+++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 355899999985421 1 223222211 122446888875 2222 12223333 7899999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVA 186 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a 186 (607)
+.+......- .++.++.|++.+.|..-.+.-+-
T Consensus 274 ~~~~~~~~~l---~~ev~~~Ia~~~~~~~R~L~g~l 306 (440)
T PRK14088 274 KMLEIEHGEL---PEEVLNFVAENVDDNLRRLRGAI 306 (440)
T ss_pred HHHHhcCCCC---CHHHHHHHHhccccCHHHHHHHH
Confidence 8886543333 67889999999998766555443
No 114
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=2.4e-05 Score=78.52 Aligned_cols=172 Identities=13% Similarity=0.090 Sum_probs=92.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEE---EeCCCCCHHHHHHHHHHHHccCC-------CC------Cc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWV---TVSQPLDLFKLQTEIATALKQSL-------PE------NE 69 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv---~~~~~~~~~~~~~~i~~~l~~~~-------~~------~~ 69 (607)
..+.++|+.|+||+++|..++...-.....-+..+-. ++. .......++.+...-..+. .. ..
T Consensus 42 HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~ 120 (365)
T PRK07471 42 HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTV 120 (365)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHHHHccCCCCeEEEeccccccccccccc
Confidence 4588999999999999999988874221000000000 000 0001123333322211110 00 00
Q ss_pred ccccchHHHHHHHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCch-hhhhhc--ccceeecccC
Q 007339 70 DKVRRPGRLLGMLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLY-RVCRSM--KCKQVAVELL 140 (607)
Q Consensus 70 ~~~~~~~~l~~~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~-~~~~~~--~~~~~~l~~L 140 (607)
-..+.+..+.+.+. .+.+.++|+|+++.+. ....+...+..-..++.+|++|... .+.... .+..+.+.++
T Consensus 121 I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l 200 (365)
T PRK07471 121 ITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPL 200 (365)
T ss_pred ccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCC
Confidence 11223334444332 3577899999998773 2334443333223345555555543 333222 2333999999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
+.++..+++.+..+.. ..+....+++.++|.|.....+
T Consensus 201 ~~~~i~~~L~~~~~~~-------~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 201 APEDVIDALAAAGPDL-------PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CHHHHHHHHHHhcccC-------CHHHHHHHHHHcCCCHHHHHHH
Confidence 9999999998765332 2233478899999999854433
No 115
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.22 E-value=1.2e-05 Score=84.12 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=107.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|++|+|||.|++.+++..... ..-..+.|+++. ++...+...+... ......+.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~-- 210 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEK-NPNAKVVYVTSE------KFTNDFVNALRNN---------TMEEFKEKYR-- 210 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEEHH------HHHHHHHHHHHcC---------cHHHHHHHHh--
Confidence 568999999999999999999997632 112236677643 3334444444321 1223334432
Q ss_pred CcEEEEEecCCCccc----ccccccCCCC-CCCCcEEEEEeCchh---------hhhhcccce-eecccCCHHHHHHHhH
Q 007339 86 EKFVLILDDMWEAFP----LQEIGIPEPS-EENGCKLVITTRLYR---------VCRSMKCKQ-VAVELLSKQEAFNLFI 150 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~----~~~l~~~~~~-~~~~~~IliTtR~~~---------~~~~~~~~~-~~l~~L~~~ea~~L~~ 150 (607)
+.-+|||||++.... .+++...+.. ...+..|++||.... +..++.... +++++.+.++-.+++.
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 345899999976522 1222222111 112445788776432 223344333 8999999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhh-------cCCccHHHHHHHHHHH
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASM-------SGEEEIYEWQNALNEL 205 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l-------~~~~~~~~~~~~l~~l 205 (607)
+.+......- .++.++.|++.++|..-.+.-+-..+ ...-+....+++++.+
T Consensus 291 ~~~~~~~~~l---~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 291 KKAEEEGIDL---PDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHcCCCC---CHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9886543333 67899999999999877554433222 1222345556666554
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=1.9e-05 Score=84.08 Aligned_cols=174 Identities=11% Similarity=0.089 Sum_probs=97.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHccCCC----CCcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFN-DVIWVTVSQPLDLFKLQTEIATALKQSLP----ENEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~ 79 (607)
.+.+.++|+.|+||||+|+.+++.+-.....-. +-.+- .......++.|...-..+.. ......+.++.+.
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIi 121 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREII 121 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHH
Confidence 346889999999999999999988742210000 00000 11112222223222211110 0001112233333
Q ss_pred HHHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEE-EEeCchhhhhhc--ccceeecccCCHHHHHHHhH
Q 007339 80 GMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLV-ITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFI 150 (607)
Q Consensus 80 ~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~Il-iTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~ 150 (607)
.... .+++.++|+|+++.+.. .+.+...+..-...+.+| +|+....+.... ++..+++..++.++..+.+.
T Consensus 122 e~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~ 201 (598)
T PRK09111 122 ESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLS 201 (598)
T ss_pred HHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHH
Confidence 3332 34677899999987742 444444443333345554 454444443322 23338999999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
+.+....... .++.++.|++.++|.+.-+...
T Consensus 202 ~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 202 RIAAKEGVEV---EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 9886554333 5688999999999998654433
No 117
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.21 E-value=3.4e-06 Score=83.00 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHHccC-CCCCcccc----cchHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL--DLFKLQTEIATALKQS-LPENEDKV----RRPGR 77 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~-~~~~~~~~----~~~~~ 77 (607)
....+|+|++|+||||||+++++.... ++|+.++||.+.+.. ++.++++.+...+-.. ........ ..+..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~--nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITT--NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHh--hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999864 479999999987766 6777777776322111 11111100 01111
Q ss_pred HHHHH-hcCCcEEEEEecCCCc
Q 007339 78 LLGML-KAKEKFVLILDDMWEA 98 (607)
Q Consensus 78 l~~~~-~~~~~~LlVlDdv~~~ 98 (607)
..+.+ ..+++++|++|++...
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHH
Confidence 22222 2689999999999765
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.5e-05 Score=82.75 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=93.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccC-----CCC-CcccccchHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQS-----LPE-NEDKVRRPGRLL 79 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~-~~~~~~~~~~l~ 79 (607)
+.+.++|+.|+||||+|+.++..+--. +.. .+..|. ....+..+...-+.. ... .....+.+..+.
T Consensus 36 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~-~~~---~~~pCg----~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~ 107 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSARILARSLNCA-QGP---TATPCG----VCESCVALAPNGPGSIDVVELDAASHGGVDDTRELR 107 (584)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc-cCC---CCCccc----ccHHHHHhhcccCCCceEEEeccccccCHHHHHHHH
Confidence 457899999999999999999876421 000 000111 111122221110000 000 000111122222
Q ss_pred HHHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcE-EEEEeCchhhhhhc--ccceeecccCCHHHHHHHhH
Q 007339 80 GMLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCK-LVITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFI 150 (607)
Q Consensus 80 ~~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~ 150 (607)
+... .+++.++|+|+++.+. ....++..+..-..... |++||....+.... ++..+++..++.++..+.+.
T Consensus 108 ~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~ 187 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIA 187 (584)
T ss_pred HHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHH
Confidence 2221 3567899999998773 33444444433233444 44555555444332 23348999999999999998
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHHH
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPL-AIVTVAA 187 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~a~ 187 (607)
+++....... .++.+..|++..+|-+. ++..+-.
T Consensus 188 ~i~~~egi~i---~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 188 RICEQEGVVV---DDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8876654333 56788899999999764 4444433
No 119
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.20 E-value=4.3e-05 Score=80.35 Aligned_cols=161 Identities=12% Similarity=0.122 Sum_probs=100.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|..|+|||.|+..+++..... ..-..++|+++ .++...+...+... ....+.+.+ .
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y-~- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRY-R- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHh-h-
Confidence 458999999999999999999987532 11223677764 33444444444321 112233333 1
Q ss_pred CcEEEEEecCCCccc---c-cccccCCCCC-CCCcEEEEEeCch---------hhhhhcccce-eecccCCHHHHHHHhH
Q 007339 86 EKFVLILDDMWEAFP---L-QEIGIPEPSE-ENGCKLVITTRLY---------RVCRSMKCKQ-VAVELLSKQEAFNLFI 150 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~---~-~~l~~~~~~~-~~~~~IliTtR~~---------~~~~~~~~~~-~~l~~L~~~ea~~L~~ 150 (607)
+-=+|||||++.... + +++...+... ..+..|||||+.. .+..++.+.. ++|+..+.+.-.+++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 235889999986622 1 2232222211 2345688888842 2233344444 8999999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHH
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAA 187 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~ 187 (607)
+.+......- .+++++.|++.+.+..-.|.-+-.
T Consensus 457 kka~~r~l~l---~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 457 KKAVQEQLNA---PPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred HHHHhcCCCC---CHHHHHHHHHhccCCHHHHHHHHH
Confidence 9886664444 678999999998877665554443
No 120
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.20 E-value=4.7e-06 Score=80.40 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
....+.++|++|+|||++|+.++..+...+. .....++.++.. ++ ....-. ........+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~-~~~~~~v~~~~~----~l----~~~~~g------~~~~~~~~~~~--- 102 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNV-LSKGHLIEVERA----DL----VGEYIG------HTAQKTREVIK--- 102 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCc-ccCCceEEecHH----Hh----hhhhcc------chHHHHHHHHH---
Confidence 4456889999999999999999987642211 111112222221 11 111100 00111122222
Q ss_pred cCCcEEEEEecCCCcc----------cccccccCCCCCCCCcEEEEEeCchhh----------hhhcccceeecccCCHH
Q 007339 84 AKEKFVLILDDMWEAF----------PLQEIGIPEPSEENGCKLVITTRLYRV----------CRSMKCKQVAVELLSKQ 143 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~IliTtR~~~~----------~~~~~~~~~~l~~L~~~ 143 (607)
.....+|++|+++... ..+.+............+++++....+ ..++ ...+.+++++.+
T Consensus 103 ~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~ 181 (261)
T TIGR02881 103 KALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVE 181 (261)
T ss_pred hccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHH
Confidence 2234589999998642 122333333323333455566543322 1121 122788999999
Q ss_pred HHHHHhHhhhCCCCCCCccchHHHHHHHHHHc
Q 007339 144 EAFNLFIDGVGSSILQVPILNKEIINEVVEEC 175 (607)
Q Consensus 144 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 175 (607)
|..+++.+.+......- .++....+.+..
T Consensus 182 el~~Il~~~~~~~~~~l---~~~a~~~l~~~~ 210 (261)
T TIGR02881 182 ELMEIAERMVKEREYKL---TEEAKWKLREHL 210 (261)
T ss_pred HHHHHHHHHHHHcCCcc---CHHHHHHHHHHH
Confidence 99999998885542222 334444444443
No 121
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=2.7e-05 Score=79.38 Aligned_cols=155 Identities=8% Similarity=0.139 Sum_probs=89.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccC-----CCCCCe-EEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEK-----PNKFND-VIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLL 79 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~-----~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 79 (607)
+.+.++|++|+|||++|+.+++..... ...|.. ++.++........++ ..+.+.+....
T Consensus 40 ~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i-~~l~~~~~~~p-------------- 104 (367)
T PRK14970 40 QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI-RNLIDQVRIPP-------------- 104 (367)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-HHHHHHHhhcc--------------
Confidence 478899999999999999998886431 111221 222222221122222 22222221100
Q ss_pred HHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEe-Cchhhhhhc--ccceeecccCCHHHHHHHhHhhhC
Q 007339 80 GMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITT-RLYRVCRSM--KCKQVAVELLSKQEAFNLFIDGVG 154 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTt-R~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~ 154 (607)
..+++.++|+|+++.... +..+...+......+.+|++| +...+.... ....++..++++++....+.+.+.
T Consensus 105 ---~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~ 181 (367)
T PRK14970 105 ---QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAV 181 (367)
T ss_pred ---ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHH
Confidence 024567899999987633 444433333223344455544 333332221 122389999999999999988775
Q ss_pred CCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 155 SSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 155 ~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
.....- .++.++.+++.++|.+-.
T Consensus 182 ~~g~~i---~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 182 KEGIKF---EDDALHIIAQKADGALRD 205 (367)
T ss_pred HcCCCC---CHHHHHHHHHhCCCCHHH
Confidence 543333 568899999999987653
No 122
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.19 E-value=6.9e-05 Score=77.40 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=93.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|+.|+|||+|++.+++..... ...+++++. ..+...+...+... ........+ .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~--~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFY--R 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHc--c
Confidence 568999999999999999999987532 223667753 33444455444321 112222222 3
Q ss_pred CcEEEEEecCCCcccc----cccccCCCC-CCCCcEEEEEeCch---------hhhhhcccce-eecccCCHHHHHHHhH
Q 007339 86 EKFVLILDDMWEAFPL----QEIGIPEPS-EENGCKLVITTRLY---------RVCRSMKCKQ-VAVELLSKQEAFNLFI 150 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~~----~~l~~~~~~-~~~~~~IliTtR~~---------~~~~~~~~~~-~~l~~L~~~ea~~L~~ 150 (607)
+.-+|++||++..... +++...+.. ...+..||+||... .+..++.+.. +++++++.++..+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 3458899999765321 222222211 01345688888632 2222333333 8899999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.+......- .++.++.|++.+.+.-
T Consensus 282 ~k~~~~~~~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALSIRI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcCCCC---CHHHHHHHHHhcCCCH
Confidence 8886653333 6788888888887665
No 123
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.8e-05 Score=83.51 Aligned_cols=155 Identities=10% Similarity=0.118 Sum_probs=93.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC--------------------CCCCCeEEEEEeCCCCCHHHHHHHHHHHHccC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK--------------------PNKFNDVIWVTVSQPLDLFKLQTEIATALKQS 64 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~--------------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 64 (607)
.+.+.++|+.|+||||+|+.++...-.. +.+|+ +..++.......+++.. +...+...
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~~~ld~~~~~~vd~Ir~-li~~~~~~ 116 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-IHELDAASNNSVDDIRN-LIEQVRIP 116 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-eEEecccccCCHHHHHH-HHHHHhhC
Confidence 3457899999999999999998876311 11232 33333332222222222 21222111
Q ss_pred CCCCcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEE-EEeCchhhhhhc--ccceeeccc
Q 007339 65 LPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLV-ITTRLYRVCRSM--KCKQVAVEL 139 (607)
Q Consensus 65 ~~~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Il-iTtR~~~~~~~~--~~~~~~l~~ 139 (607)
. ..+++.++|+|+++.+. ..+.+...+..-...+.+| +|++...+.... ++..+++.+
T Consensus 117 P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ 179 (614)
T PRK14971 117 P-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNR 179 (614)
T ss_pred c-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCC
Confidence 0 02467799999998874 3445554444333344444 455544444332 233389999
Q ss_pred CCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 140 LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 140 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
++.++..+.+.+.+....... .++.++.|++.++|-..-
T Consensus 180 ls~~ei~~~L~~ia~~egi~i---~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 180 IQVADIVNHLQYVASKEGITA---EPEALNVIAQKADGGMRD 218 (614)
T ss_pred CCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 999999999998876654343 567899999999997643
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=4.3e-05 Score=79.72 Aligned_cols=159 Identities=10% Similarity=0.079 Sum_probs=93.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCC-C-----------------CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKP-N-----------------KFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~-~-----------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
++..++|+.|+||||+|+.++...-... . ....+++++......++++...+ .......
T Consensus 37 hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~IReli-e~~~~~P-- 113 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELI-EQTKYKP-- 113 (535)
T ss_pred eeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHHHHHH-HHHhhCc--
Confidence 4568999999999999999988763210 0 01113333332222233222222 1111000
Q ss_pred CcccccchHHHHHHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCch-hhhhhc--ccceeecccCCH
Q 007339 68 NEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLY-RVCRSM--KCKQVAVELLSK 142 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~-~~~~~~--~~~~~~l~~L~~ 142 (607)
..+++.++|+|+++.+.. ...++..+-.-...+++|++|.+. .+.... ++..+++.+++.
T Consensus 114 ---------------~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~ 178 (535)
T PRK08451 114 ---------------SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQ 178 (535)
T ss_pred ---------------ccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCH
Confidence 025678999999987733 334443333223445555555542 222211 233389999999
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
++..+.+.+.+......- .++.++.|++.++|.+.-+...
T Consensus 179 ~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 179 NSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 999999988886654333 6788999999999988544443
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.6e-05 Score=80.34 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=91.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCC------------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKP------------------NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP 66 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~------------------~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 66 (607)
.+.+.++|+.|+||||+|+.++...-... ..+..+++++.+.....++
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~-------------- 103 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDD-------------- 103 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCHHH--------------
Confidence 34567899999999999999988763110 0111233333222211111
Q ss_pred CCcccccchHHHHHHHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEE-EEeCchhhhhhc--ccceeec
Q 007339 67 ENEDKVRRPGRLLGMLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLV-ITTRLYRVCRSM--KCKQVAV 137 (607)
Q Consensus 67 ~~~~~~~~~~~l~~~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Il-iTtR~~~~~~~~--~~~~~~l 137 (607)
++.+.+... .+++.++|+|+++.+. ..+.+...+..-.....+| .||+...+.... .+..+++
T Consensus 104 --------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f 175 (486)
T PRK14953 104 --------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIF 175 (486)
T ss_pred --------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEc
Confidence 112222211 3567899999998763 2344443433323334444 444443333221 2333899
Q ss_pred ccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 138 ELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 138 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
.+++.++..+.+.+++....... .++.++.|++.++|.+..+...
T Consensus 176 ~~ls~~el~~~L~~i~k~egi~i---d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 176 SKPTKEQIKEYLKRICNEEKIEY---EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998875543333 6688899999999977544333
No 126
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.17 E-value=4e-06 Score=82.98 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=62.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC--CCHHHHHHHHHHHHccCCCCCcccc-----cchHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP--LDLFKLQTEIATALKQSLPENEDKV-----RRPGR 77 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~ 77 (607)
...++|+|++|+|||||++.+++.+.. ++|+..+|+.+.+. .++.++++.+...+-.......... ..+..
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~--nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR--NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc--cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 356899999999999999999999863 47999899988754 6788888888543322111111110 11111
Q ss_pred HH-HHHhcCCcEEEEEecCCCc
Q 007339 78 LL-GMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 78 l~-~~~~~~~~~LlVlDdv~~~ 98 (607)
.. .....|++++|++|.+...
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHH
Confidence 11 2223689999999999765
No 127
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.16 E-value=3.7e-08 Score=101.32 Aligned_cols=127 Identities=27% Similarity=0.220 Sum_probs=82.0
Q ss_pred CCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHH-hccCCCCCCeeeccC
Q 007339 355 NGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLE-CMEMLENLSHLYLSS 433 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~ 433 (607)
..|.+.+.++|.+..+-.++.-++.|++|+|++|++...- .+..+++|++|||+.|.++.+|. +...+. |+.|++++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 3455566667766655556666677777777777655332 56677777777777777776664 222333 77777777
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCc
Q 007339 434 LQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKL 486 (607)
Q Consensus 434 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 486 (607)
|.++.+-. +.++++|+.||+++|-......+..+..|. .|+.|.|.+|++
T Consensus 242 N~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhhcCCcc
Confidence 77666643 367777777777776555555556666666 777777766654
No 128
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=3.4e-05 Score=82.74 Aligned_cols=156 Identities=13% Similarity=0.098 Sum_probs=91.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCC---------------CeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKF---------------NDVIWVTVSQPLDLFKLQTEIATALKQSLPENE 69 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f---------------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 69 (607)
.+.+.++|+.|+|||++|+.++...-...... ..+++++......
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~-------------------- 99 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNG-------------------- 99 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCC--------------------
Confidence 45678999999999999999988763210000 0011121111111
Q ss_pred ccccchHHHHHHHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcE-EEEEeCchhhhhhc--ccceeecccC
Q 007339 70 DKVRRPGRLLGMLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCK-LVITTRLYRVCRSM--KCKQVAVELL 140 (607)
Q Consensus 70 ~~~~~~~~l~~~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~--~~~~~~l~~L 140 (607)
.+.++.+.+... .+++.++|+|+++.+. .+..+...+-.-..... |++|++...+.... ++..+++.++
T Consensus 100 --vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L 177 (725)
T PRK07133 100 --VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRI 177 (725)
T ss_pred --HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCC
Confidence 112233333332 3577899999998773 34444433332222333 55665555554322 2334999999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch-HHHHHH
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP-LAIVTV 185 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 185 (607)
+.++..+.+...+....... .++.++.+++.++|-+ .|+..+
T Consensus 178 ~~eeI~~~L~~il~kegI~i---d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 178 SEDEIVSRLEFILEKENISY---EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred CHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999988775543333 5677899999999866 444444
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.4e-06 Score=56.44 Aligned_cols=41 Identities=27% Similarity=0.308 Sum_probs=32.1
Q ss_pred CCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCCC
Q 007339 401 LALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPT 441 (607)
Q Consensus 401 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~ 441 (607)
++|++|++++|+|+.+|+.+++|++|+.|++++|.++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46888888888888888878888888888888888876643
No 130
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.11 E-value=8.1e-08 Score=92.84 Aligned_cols=239 Identities=15% Similarity=0.099 Sum_probs=134.9
Q ss_pred CCCCceEEEccCCC-Ccc--CCccccCCccCcEeecccccCCCCCC---cccCCCCCCEEeccCC---chhhhHHhccCC
Q 007339 353 HMNGLKVLNLSHTD-IEV--LPSSISDLTNLRSLLLRWCGRLKRVP---SLAKLLALQYLDLEGT---WIEEVLECMEML 423 (607)
Q Consensus 353 ~l~~L~~L~l~~~~-~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~---~l~~l~~~~~~l 423 (607)
.|++|+.+++..|. ++. +..--..+++|+++++++|..+..-. ...++..++.+.+.|| .+..+...-+.+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 46667777776642 441 11123456777777777776544311 3455556666666665 122222222344
Q ss_pred CCCCeeeccCCc-CCcCCC-ccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccccccc-ccccCCc
Q 007339 424 ENLSHLYLSSLQ-LKKFPT-GILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYV-KSTDGRG 500 (607)
Q Consensus 424 ~~L~~L~l~~~~-l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~-~~~~~~~ 500 (607)
.-+..+++..|+ ++...- .+-..+..|+.|+.+++....+..+..++.-.++|+.+.++.|..-.-..+. -.....+
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 455556655554 333221 1124577888888888777666666666655458888888777642222221 1222333
Q ss_pred ceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc------ccCCcccceeeeeeecCcccccCccccccc
Q 007339 501 SKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP------IVLPEDVQYLEMIRVDDVASLNDVLPREQG 574 (607)
Q Consensus 501 L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~------~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 574 (607)
|+.+.+.-..-.... .....-.+++.|+.|.|+.|......+. ......|..|.+++|+.+++-. +..+
T Consensus 348 Le~l~~e~~~~~~d~-tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~-Le~l--- 422 (483)
T KOG4341|consen 348 LERLDLEECGLITDG-TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDAT-LEHL--- 422 (483)
T ss_pred hhhhcccccceehhh-hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHH-HHHH---
Confidence 666555432211111 1122234678888888888866544422 2345678888888888666533 3333
Q ss_pred cccccccccccceEEEecccchhhhhh
Q 007339 575 LVNIGKFSHDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 575 l~~~~~~~~~L~~L~l~~c~~l~~lp~ 601 (607)
..+++|+.+++-+|.....=|.
T Consensus 423 -----~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 423 -----SICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred -----hhCcccceeeeechhhhhhhhh
Confidence 6688899999888886654443
No 131
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=1.6e-07 Score=96.80 Aligned_cols=108 Identities=21% Similarity=0.164 Sum_probs=77.6
Q ss_pred CcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCc
Q 007339 380 LRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGN 459 (607)
Q Consensus 380 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 459 (607)
|.+.+.++|.+.....++.-++.|+.|||++|+++++- .+..|++|++|||+.|.+..+|--.-..+. |+.|.+.+|-
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 44445555544333336777889999999999988775 788899999999999998887754333444 9999999875
Q ss_pred chhhhhHHHhhcccccccEEEeeecCcccccccc
Q 007339 460 EALRETVEEAASLSDGLDYFEGCFSKLKDFNRYV 493 (607)
Q Consensus 460 ~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~ 493 (607)
.... ..+.+|. +|+.|++++|-+.+..+..
T Consensus 244 l~tL---~gie~Lk-sL~~LDlsyNll~~hseL~ 273 (1096)
T KOG1859|consen 244 LTTL---RGIENLK-SLYGLDLSYNLLSEHSELE 273 (1096)
T ss_pred HHhh---hhHHhhh-hhhccchhHhhhhcchhhh
Confidence 4443 4456777 8889999988876655443
No 132
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.11 E-value=6.4e-07 Score=92.78 Aligned_cols=133 Identities=26% Similarity=0.241 Sum_probs=91.4
Q ss_pred CCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 353 HMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
.+..+..+.+..|.+..+...+..+.+|..+++..|.+......+..+.+|++|++++|.|+.+. ++..++.|+.|+++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence 44555555677777776444567788888888887775544434778888888888888877663 45666778888888
Q ss_pred CCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccc
Q 007339 433 SLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFN 490 (607)
Q Consensus 433 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~ 490 (607)
+|.+..+.. +..+++|+.+++++|......... +..+. +++.+.+..|.+..+.
T Consensus 149 ~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~-~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 149 GNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELI-SLEELDLGGNSIREIE 202 (414)
T ss_pred cCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhcc-chHHHhccCCchhccc
Confidence 888877754 356888888888887654433311 45666 7777777777665433
No 133
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=4.7e-05 Score=81.29 Aligned_cols=171 Identities=12% Similarity=0.163 Sum_probs=95.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEE-eCCCCCHHHHHHHHHHHHccCCC---C-CcccccchHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVT-VSQPLDLFKLQTEIATALKQSLP---E-NEDKVRRPGRLLG 80 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~---~-~~~~~~~~~~l~~ 80 (607)
..+.++|+.|+||||+|+.++...-.. ...+.-.|.. ...+......++.+...-..... . .....+.+..+.+
T Consensus 39 ha~Lf~Gp~GvGKttlA~~lAk~L~c~-~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e 117 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRE 117 (620)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhCCC-CcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHH
Confidence 458899999999999999999887432 1111011221 11112222333333222111100 0 0111122333333
Q ss_pred HHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEE-EEeCchhhhhhc--ccceeecccCCHHHHHHHhHh
Q 007339 81 MLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLV-ITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~Il-iTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~ 151 (607)
.+. .+++.++|+|+++.+.. .+.+...+..-...+.+| +|++...+.... ++..+++.+++.++....+.+
T Consensus 118 ~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~ 197 (620)
T PRK14954 118 NVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQM 197 (620)
T ss_pred HHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHH
Confidence 331 35677899999988743 444544444323344444 454444444322 233389999999999988888
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPL 180 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 180 (607)
.+......- .++.++.|++.++|..-
T Consensus 198 i~~~egi~I---~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 198 ICRAEGIQI---DADALQLIARKAQGSMR 223 (620)
T ss_pred HHHHcCCCC---CHHHHHHHHHHhCCCHH
Confidence 775443333 67889999999999654
No 134
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=6.6e-05 Score=80.84 Aligned_cols=170 Identities=10% Similarity=0.110 Sum_probs=95.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC---C-CcccccchHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP---E-NEDKVRRPGRLLGM 81 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~-~~~~~~~~~~l~~~ 81 (607)
+.+.++|+.|+||||+|+.++..+......- -.........+..+......+.. . .....+.+..+.+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~-------~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~ 111 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARILAKAVNCTTNDP-------KGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIER 111 (585)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHH
Confidence 4578999999999999999998864210000 00111122333333322211100 0 00111122223222
Q ss_pred Hh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeC-chhhhhhc--ccceeecccCCHHHHHHHhHhh
Q 007339 82 LK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTR-LYRVCRSM--KCKQVAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 82 ~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR-~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~ 152 (607)
+. .+++.++|||+++.+. ..+.+...+..-...+.+|++|. ...+.... .+..+++..++.++..+.+.+.
T Consensus 112 ~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~ 191 (585)
T PRK14950 112 VQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKI 191 (585)
T ss_pred HhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHH
Confidence 21 2467899999998773 34445444433334455555554 33333322 1223888999999999999888
Q ss_pred hCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 153 VGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
+....... .++.+..|++.++|.+..+...
T Consensus 192 a~~egl~i---~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 192 AAAEGINL---EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 76554333 5688999999999988654443
No 135
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=9.5e-05 Score=76.68 Aligned_cols=157 Identities=10% Similarity=0.140 Sum_probs=90.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC--------------------CCCeEEEEEeCCCCCHHHHHHHHHHHHccCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN--------------------KFNDVIWVTVSQPLDLFKLQTEIATALKQSL 65 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~--------------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 65 (607)
+.+.++|+.|+|||++|+.++...-.... +++ +++++......++++. .+.+.+..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~~i~g~~~~gid~ir-~i~~~l~~-- 115 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VLEIDGASHRGIEDIR-QINETVLF-- 115 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eEEeeccccCCHHHHH-HHHHHHHh--
Confidence 56789999999999999999987643210 111 2222211111111111 11111110
Q ss_pred CCCcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEe-Cchhhhhhc--ccceeecccC
Q 007339 66 PENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITT-RLYRVCRSM--KCKQVAVELL 140 (607)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTt-R~~~~~~~~--~~~~~~l~~L 140 (607)
.-..+++.++|+|+++... ..+.+...+..-.....+|++| +...+.... ++..+++.++
T Consensus 116 ---------------~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l 180 (451)
T PRK06305 116 ---------------TPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRI 180 (451)
T ss_pred ---------------hhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCC
Confidence 0013567899999998763 2334444443323355555555 333333222 2333899999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH-HHHH
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL-AIVT 184 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~ 184 (607)
++++..+.+.+.+....... .++.++.|++.++|.+. |+..
T Consensus 181 ~~~el~~~L~~~~~~eg~~i---~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 181 PEETIIDKLALIAKQEGIET---SREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred CHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999888775543333 67889999999999764 4433
No 136
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.03 E-value=1.9e-05 Score=80.25 Aligned_cols=149 Identities=12% Similarity=0.155 Sum_probs=83.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-+.|+|++|+|||++|+.++.... ..| +.+.. .++... .++ ........+.+....
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~---~~~-----~~v~~----~~l~~~---~~g-------~~~~~i~~~f~~a~~ 213 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETN---ATF-----IRVVG----SELVRK---YIG-------EGARLVREIFELAKE 213 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCC---CCE-----Eecch----HHHHHH---hhh-------HHHHHHHHHHHHHHh
Confidence 34589999999999999999999875 222 22211 111111 010 011122333333334
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCCC--CCCCcEEEEEeCchhhhhh-----cccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEPS--EENGCKLVITTRLYRVCRS-----MKCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~-----~~~~~-~~l~~L 140 (607)
..+.+|+||+++.... +..+...+.. ...+.+||.||........ ..... +++...
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 5678999999976521 1111111111 1235678888874432211 12222 888999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.++..++|..++....... +.....+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~----~~~~~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAE----DVDLEAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCc----cCCHHHHHHHcCCCC
Confidence 99999999998875542221 123567778887764
No 137
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.03 E-value=4.6e-05 Score=74.09 Aligned_cols=132 Identities=13% Similarity=0.101 Sum_probs=72.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKE 86 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (607)
-+.++|++|+|||++|+.++......+..... -|+.+.. .+ +...+... .. .....+.+. -.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~-~~v~v~~----~~----l~~~~~g~----~~--~~~~~~~~~---a~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKG-HLVSVTR----DD----LVGQYIGH----TA--PKTKEILKR---AM 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc-eEEEecH----HH----HhHhhccc----ch--HHHHHHHHH---cc
Confidence 58899999999999999888776533211111 2333332 11 22222111 00 112223332 23
Q ss_pred cEEEEEecCCCcc-----------cccccccCCCCCCCCcEEEEEeCchhhhhhc--c-------cceeecccCCHHHHH
Q 007339 87 KFVLILDDMWEAF-----------PLQEIGIPEPSEENGCKLVITTRLYRVCRSM--K-------CKQVAVELLSKQEAF 146 (607)
Q Consensus 87 ~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~--~-------~~~~~l~~L~~~ea~ 146 (607)
.-+|+||+++... ..+.+...+.....+.+||.++....+.... . ...+++++++.+|..
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 4699999997441 1223333333334566677776543322111 1 223899999999999
Q ss_pred HHhHhhhCCC
Q 007339 147 NLFIDGVGSS 156 (607)
Q Consensus 147 ~L~~~~~~~~ 156 (607)
+++...+...
T Consensus 202 ~I~~~~l~~~ 211 (284)
T TIGR02880 202 VIAGLMLKEQ 211 (284)
T ss_pred HHHHHHHHHh
Confidence 9998887553
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=7.8e-05 Score=80.10 Aligned_cols=171 Identities=12% Similarity=0.103 Sum_probs=96.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----CCcccccchHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP----ENEDKVRRPGRLLGM 81 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~ 81 (607)
+.+.++|+.|+||||+|+.++..+-.. ...... .........++.+......+.. ......+.++.+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~--~~~~~~----~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~ 112 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCL--NSDKPT----PEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIER 112 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCC--CcCCCC----CCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHH
Confidence 567899999999999999999987421 110000 0111223344444333222110 011111233333333
Q ss_pred Hh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEE-EEEeCchhhhhhc--ccceeecccCCHHHHHHHhHhh
Q 007339 82 LK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKL-VITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 82 ~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~I-liTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~ 152 (607)
.. .+++.++|||+++.+. ....+...+..-.....+ ++|+....+.... ++..+++..++.++..+.+.+.
T Consensus 113 a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~i 192 (620)
T PRK14948 113 AQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEI 192 (620)
T ss_pred HhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHH
Confidence 22 2567899999999773 344454444322233444 4455443333322 2333888899999999988887
Q ss_pred hCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 153 VGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
+....... .++.+..|++.++|.+..+...
T Consensus 193 a~kegi~i---s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 193 AEKESIEI---EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHhCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 76543333 5677899999999987544333
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00011 Score=77.91 Aligned_cols=167 Identities=11% Similarity=0.099 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCC---CCC-cccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSL---PEN-EDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~-~~~~~~~~~l~~ 80 (607)
.+.+.++|+.|+||||+|+.++...-.. .... ...+.. ...+..+...-.... ... ....+.+..+.+
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~-~~~~---~~pC~~----C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e 109 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCV-NGPT---PMPCGE----CSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKE 109 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccc-cCCC---CCCCcc----chHHHHHHcCCCCCeEEecCcccCCHHHHHHHHH
Confidence 3467899999999999999999987421 0000 000100 111111111100000 000 001111222221
Q ss_pred HHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEe-Cchhhhhhc--ccceeecccCCHHHHHHHhHh
Q 007339 81 MLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITT-RLYRVCRSM--KCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTt-R~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~ 151 (607)
... .+++.++|+|+++.+.. ++.+...+..-.....+|++| ....+.... ++..+++.+++.++..+.+.+
T Consensus 110 ~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~ 189 (563)
T PRK06647 110 EIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKK 189 (563)
T ss_pred HHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHH
Confidence 111 35778999999987743 444544444333444455444 433343322 233388999999999999988
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
.+......- .++.++.|++.++|.+..+
T Consensus 190 i~~~egi~i---d~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 190 VCLEDQIKY---EDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 875443333 6788999999999987543
No 140
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=4.1e-06 Score=77.63 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=81.6
Q ss_pred CCCCceEEEccCCCCc---cCCccccCCccCcEeecccccCCCCCCcc-cCCCCCCEEeccCCchh--hhHHhccCCCCC
Q 007339 353 HMNGLKVLNLSHTDIE---VLPSSISDLTNLRSLLLRWCGRLKRVPSL-AKLLALQYLDLEGTWIE--EVLECMEMLENL 426 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~--~l~~~~~~l~~L 426 (607)
.+..++.+||.+|.|+ .+-..+..+++|++|+++.|++...+.++ ....+|++|-|.|+.+. ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4667888888888877 33334667888888888888777666544 46778888888877543 444456677888
Q ss_pred CeeeccCCcCCcCCC--cccc-CCCCCCEEEcccCcchhhhhHHHhhc-ccccccEEEeeecCccc
Q 007339 427 SHLYLSSLQLKKFPT--GILP-RLRNLYKLKLSFGNEALRETVEEAAS-LSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 427 ~~L~l~~~~l~~~~~--~~~~-~l~~L~~L~l~~~~~~~~~~~~~l~~-l~~~L~~L~l~~~~~~~ 488 (607)
+.|.++.|++..+.. .-.. --+.+.+|....|..........+.. .| ++..+-+..|++..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp-nv~sv~v~e~PlK~ 213 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP-NVNSVFVCEGPLKT 213 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc-cchheeeecCcccc
Confidence 888888775432221 1111 12245555555554333333333333 34 66666666555543
No 141
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=2e-05 Score=78.59 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=72.8
Q ss_pred cCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCC-chhhhHHhccCCCCCCee
Q 007339 352 VHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGT-WIEEVLECMEMLENLSHL 429 (607)
Q Consensus 352 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L 429 (607)
..+++++.|++++|.++.+|. + ..+|+.|.+++|.....+| .+ ..+|++|++++| ++..+|. +|+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 346889999999999888882 2 2469999999887777777 34 357889999888 6666664 46666
Q ss_pred eccCCcCCcCCCccccCC-CCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 430 YLSSLQLKKFPTGILPRL-RNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 430 ~l~~~~l~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
++.++....++ .+ ++|+.|.+.+++........ ..+|.+|+.|+++.|...
T Consensus 118 ~L~~n~~~~L~-----~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 118 EIKGSATDSIK-----NVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNI 169 (426)
T ss_pred EeCCCCCcccc-----cCcchHhheeccccccccccccc--cccCCcccEEEecCCCcc
Confidence 66665433221 11 23556666432211111000 124447888888766644
No 142
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.97 E-value=2.4e-05 Score=67.69 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.+.|+|++|+||||+|+.++....... ..+++++.+........... ..........................
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999986431 34777766554332222211 11111111112222233334444433
Q ss_pred CCcEEEEEecCCCccc
Q 007339 85 KEKFVLILDDMWEAFP 100 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~ 100 (607)
.+..++++|++.....
T Consensus 77 ~~~~viiiDei~~~~~ 92 (148)
T smart00382 77 LKPDVLILDEITSLLD 92 (148)
T ss_pred cCCCEEEEECCcccCC
Confidence 3459999999987744
No 143
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.95 E-value=9.2e-07 Score=85.73 Aligned_cols=237 Identities=16% Similarity=0.069 Sum_probs=97.7
Q ss_pred CCCCceEEEccCCC-Cc--cCCccccCCccCcEeecccccCCCCCC---cccCCCCCCEEeccCC-chh--hhHHhccCC
Q 007339 353 HMNGLKVLNLSHTD-IE--VLPSSISDLTNLRSLLLRWCGRLKRVP---SLAKLLALQYLDLEGT-WIE--EVLECMEML 423 (607)
Q Consensus 353 ~l~~L~~L~l~~~~-~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~-~l~--~l~~~~~~l 423 (607)
+++++..|++.++. ++ .+...-..+++|+++++..|...+... ....+++|.+|+++|| .++ .+-.-...+
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 45555555555543 22 111111345556666666554443322 2335556666666665 222 122223344
Q ss_pred CCCCeeeccCCcCCcCCCccc----cCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc-cccccccccC
Q 007339 424 ENLSHLYLSSLQLKKFPTGIL----PRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD-FNRYVKSTDG 498 (607)
Q Consensus 424 ~~L~~L~l~~~~l~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~~~~~~~~ 498 (607)
..++.+.+.+|.- .+.+.+ +.+..+.++++..|+...+...-.+....+.|+.++.+.+.... ..-+--...+
T Consensus 242 ~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~ 319 (483)
T KOG4341|consen 242 KELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC 319 (483)
T ss_pred hhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence 4455555544421 111110 23333444444444444444433333333355666655443321 1111111112
Q ss_pred CcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc---ccCCcccceeeeeeecCcccccCcccccccc
Q 007339 499 RGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP---IVLPEDVQYLEMIRVDDVASLNDVLPREQGL 575 (607)
Q Consensus 499 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l 575 (607)
.+|+.+.+..+..+.. .-....-.+++.|+.+++..|........ ...++.|+.|.++.|..+++.. +..+
T Consensus 320 ~~L~~l~l~~c~~fsd-~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g-----i~~l 393 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSD-RGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG-----IRHL 393 (483)
T ss_pred CceEEEeccccchhhh-hhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh-----hhhh
Confidence 3355555543321111 10111112445566666666544322211 3445556666666665444331 0111
Q ss_pred ccccccccccceEEEecccchh
Q 007339 576 VNIGKFSHDLKVLRFHYCHNLK 597 (607)
Q Consensus 576 ~~~~~~~~~L~~L~l~~c~~l~ 597 (607)
...+..+..|+.+.+++||.+.
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred hhccccccccceeeecCCCCch
Confidence 1112344556666666665543
No 144
>CHL00181 cbbX CbbX; Provisional
Probab=97.93 E-value=0.00012 Score=71.09 Aligned_cols=133 Identities=12% Similarity=0.082 Sum_probs=72.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
..+.++|++|+|||++|+.++......+ .-...-|+.++. .+ +...+.... . .....+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g-~~~~~~~~~v~~----~~----l~~~~~g~~----~--~~~~~~l~~---a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLG-YIKKGHLLTVTR----DD----LVGQYIGHT----A--PKTKEVLKK---A 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcC-CCCCCceEEecH----HH----HHHHHhccc----h--HHHHHHHHH---c
Confidence 3588999999999999999988764221 111111333331 11 222221110 0 011222222 2
Q ss_pred CcEEEEEecCCCc-----------ccccccccCCCCCCCCcEEEEEeCchhhhhhc--------ccc-eeecccCCHHHH
Q 007339 86 EKFVLILDDMWEA-----------FPLQEIGIPEPSEENGCKLVITTRLYRVCRSM--------KCK-QVAVELLSKQEA 145 (607)
Q Consensus 86 ~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~--------~~~-~~~l~~L~~~ea 145 (607)
..-+|+||+++.. +..+.+...+.....+.+||+++....+.... ... .+.+++++.+|.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 3459999999764 11222223333333456677777644432111 112 288999999999
Q ss_pred HHHhHhhhCCC
Q 007339 146 FNLFIDGVGSS 156 (607)
Q Consensus 146 ~~L~~~~~~~~ 156 (607)
.+++.+.+...
T Consensus 202 ~~I~~~~l~~~ 212 (287)
T CHL00181 202 LQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHh
Confidence 99998887543
No 145
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.91 E-value=0.00012 Score=73.15 Aligned_cols=123 Identities=15% Similarity=0.229 Sum_probs=66.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
..++.++|++|+|||++|+.+++... . .+..+++.. .....+...+ ..+..... ..
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~---~---~~~~i~~~~-~~~~~i~~~l-~~~~~~~~----------------~~ 98 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVG---A---EVLFVNGSD-CRIDFVRNRL-TRFASTVS----------------LT 98 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC---c---cceEeccCc-ccHHHHHHHH-HHHHHhhc----------------cc
Confidence 35677799999999999999998753 1 244555554 2222222212 11111000 01
Q ss_pred CCcEEEEEecCCCccc---ccccccCCCCCCCCcEEEEEeCchhhh-hhc--ccceeecccCCHHHHHHHhHh
Q 007339 85 KEKFVLILDDMWEAFP---LQEIGIPEPSEENGCKLVITTRLYRVC-RSM--KCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~---~~~l~~~~~~~~~~~~IliTtR~~~~~-~~~--~~~~~~l~~L~~~ea~~L~~~ 151 (607)
+.+.++|+|+++.... ...+...+.....++++|+||...... ... ....+.++..+.++..+++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 3467899999987621 122222222234567788888643321 111 122367777777777766543
No 146
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.91 E-value=1.3e-05 Score=68.46 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=42.9
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC-C
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK-E 86 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~-~ 86 (607)
|.|+|++|+|||++|+.+++.... .++.++.....+. ...+....+..+.+..... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~------~~~~i~~~~~~~~----------------~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF------PFIEIDGSELISS----------------YAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS------EEEEEETTHHHTS----------------STTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhccc------ccccccccccccc----------------ccccccccccccccccccccc
Confidence 679999999999999999999741 2556654432100 1111112222333333223 3
Q ss_pred cEEEEEecCCCcc
Q 007339 87 KFVLILDDMWEAF 99 (607)
Q Consensus 87 ~~LlVlDdv~~~~ 99 (607)
+.+++|||++...
T Consensus 59 ~~vl~iDe~d~l~ 71 (132)
T PF00004_consen 59 PCVLFIDEIDKLF 71 (132)
T ss_dssp SEEEEEETGGGTS
T ss_pred ceeeeeccchhcc
Confidence 7999999998763
No 147
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00025 Score=75.70 Aligned_cols=166 Identities=10% Similarity=0.087 Sum_probs=91.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----CCcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP----ENEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~ 80 (607)
.+.+.++|+.|+|||++|+.++...-.... .+ ..+......+..+......+.. ......+.+..+..
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~-~~-------~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~ 109 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCLNP-PD-------GEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRD 109 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCC-CC-------CCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHH
Confidence 456788999999999999999887642210 00 0111111223333222111100 00011112223333
Q ss_pred HHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcE-EEEEeCchhhhhhc--ccceeecccCCHHHHHHHhHh
Q 007339 81 MLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCK-LVITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~ 151 (607)
... .++..++|+|+++.+. ....+...+..-..... |+.||....+.... ++..+++.+++.++..+.+..
T Consensus 110 ~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~ 189 (559)
T PRK05563 110 KVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKY 189 (559)
T ss_pred HHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHH
Confidence 321 3567899999998773 23444433332222333 44555544443322 233388899999999999988
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
.+....... .++.+..|++.++|-+..
T Consensus 190 i~~~egi~i---~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 190 ILDKEGIEY---EDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHHcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 875543333 567888999999887653
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00016 Score=77.57 Aligned_cols=169 Identities=13% Similarity=0.123 Sum_probs=91.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----CCcccccchHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP----ENEDKVRRPGRLLGM 81 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~ 81 (607)
+.+.++|+.|+||||+|+.++...-.. +..+ ..+......+..|...-..... ......+.+..+...
T Consensus 39 hayLf~Gp~G~GKtt~A~~lak~l~c~-~~~~-------~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~ 110 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARILAKALNCE-QGLT-------AEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELREN 110 (576)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhcCC-CCCC-------CCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHH
Confidence 457899999999999999998886421 0000 0000111111111111000000 000001112222222
Q ss_pred Hh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcE-EEEEeCchhhhhhcc--cceeecccCCHHHHHHHhHhh
Q 007339 82 LK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCK-LVITTRLYRVCRSMK--CKQVAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 82 ~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~~--~~~~~l~~L~~~ea~~L~~~~ 152 (607)
.. .++..++|+|+++.+.. ...+...+..-..... |++||....+..... +..+++..++.++..+.+...
T Consensus 111 ~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i 190 (576)
T PRK14965 111 VKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYI 190 (576)
T ss_pred HHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHH
Confidence 21 35677899999987743 3344433332223444 445555554543322 333889999999999999887
Q ss_pred hCCCCCCCccchHHHHHHHHHHcCCch-HHHHHH
Q 007339 153 VGSSILQVPILNKEIINEVVEECGCLP-LAIVTV 185 (607)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lal~~~ 185 (607)
+......- .++.+..|++.++|.. .++..+
T Consensus 191 ~~~egi~i---~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 191 ADQEGISI---SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 76554333 6788899999999965 455544
No 149
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.89 E-value=0.0001 Score=76.48 Aligned_cols=138 Identities=12% Similarity=0.173 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC--CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN--KFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
.+-|.++|++|+|||++|+.+++....... ......|+++.... ++.... . .....+..+.+..
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e--------Ll~kyv----G--ete~~ir~iF~~A 281 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE--------LLNKYV----G--ETERQIRLIFQRA 281 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh--------hccccc----c--hHHHHHHHHHHHH
Confidence 345899999999999999999998753210 12234555544321 110000 0 0001111222222
Q ss_pred ----hcCCcEEEEEecCCCccc--------------ccccccCCCC--CCCCcEEEEEeCchhhhhh-----cccce-ee
Q 007339 83 ----KAKEKFVLILDDMWEAFP--------------LQEIGIPEPS--EENGCKLVITTRLYRVCRS-----MKCKQ-VA 136 (607)
Q Consensus 83 ----~~~~~~LlVlDdv~~~~~--------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~-----~~~~~-~~ 136 (607)
..+++++++||+++.... +..+...+.. ...+..||.||........ .+... ++
T Consensus 282 r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~ 361 (512)
T TIGR03689 282 REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIR 361 (512)
T ss_pred HHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEE
Confidence 235789999999986521 1122222221 1134456666654433221 12223 88
Q ss_pred cccCCHHHHHHHhHhhhCCC
Q 007339 137 VELLSKQEAFNLFIDGVGSS 156 (607)
Q Consensus 137 l~~L~~~ea~~L~~~~~~~~ 156 (607)
++..+.++..++|.+++...
T Consensus 362 ~~~Pd~e~r~~Il~~~l~~~ 381 (512)
T TIGR03689 362 IERPDAEAAADIFSKYLTDS 381 (512)
T ss_pred eCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999988653
No 150
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.88 E-value=8.3e-05 Score=74.33 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=97.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
-+.+.|||+.|.|||-|+.++++..... ..-..++++. ........+..+... ...+..+.+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~-~~~a~v~y~~------se~f~~~~v~a~~~~---------~~~~Fk~~y-- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALAN-GPNARVVYLT------SEDFTNDFVKALRDN---------EMEKFKEKY-- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhh-CCCceEEecc------HHHHHHHHHHHHHhh---------hHHHHHHhh--
Confidence 5679999999999999999999998632 1111255543 344445555554431 112222222
Q ss_pred CCcEEEEEecCCCcccc----cccccCCCC-CCCCcEEEEEeCc---------hhhhhhcccce-eecccCCHHHHHHHh
Q 007339 85 KEKFVLILDDMWEAFPL----QEIGIPEPS-EENGCKLVITTRL---------YRVCRSMKCKQ-VAVELLSKQEAFNLF 149 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~~----~~l~~~~~~-~~~~~~IliTtR~---------~~~~~~~~~~~-~~l~~L~~~ea~~L~ 149 (607)
.-=++++||++-.... +++...+.. ...|..||+|++. +.+..+..+.. +++.+.+.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 2348999999765332 233333221 1234489999972 33344455555 899999999999999
Q ss_pred HhhhCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 007339 150 IDGVGSSILQVPILNKEIINEVVEECGCLPLAIV 183 (607)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 183 (607)
.+.+......- .+++..-|++.....-..+.
T Consensus 254 ~kka~~~~~~i---~~ev~~~la~~~~~nvReLe 284 (408)
T COG0593 254 RKKAEDRGIEI---PDEVLEFLAKRLDRNVRELE 284 (408)
T ss_pred HHHHHhcCCCC---CHHHHHHHHHHhhccHHHHH
Confidence 99886665444 56777777777665544333
No 151
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00044 Score=67.92 Aligned_cols=160 Identities=8% Similarity=0.037 Sum_probs=90.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCC------CCCcccccchHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSL------PENEDKVRRPGRL 78 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~~l 78 (607)
...+.++|+.|+||+++|+.++...--... .. ..+......++.+...-..+. ....-..+.++++
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~-~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l 95 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTP-QG-------DQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREI 95 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCC-CC-------CCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHH
Confidence 356789999999999999999888742210 00 011112233333322211111 0001112233333
Q ss_pred HHHHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeC-chhhhhhcc--cceeecccCCHHHHHHHh
Q 007339 79 LGMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTR-LYRVCRSMK--CKQVAVELLSKQEAFNLF 149 (607)
Q Consensus 79 ~~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR-~~~~~~~~~--~~~~~l~~L~~~ea~~L~ 149 (607)
.+.+. .+++.++|+|+++.+.. ...+...+-.-..++.+|++|. ...+..... +..+.+.+++.++..+.+
T Consensus 96 ~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L 175 (325)
T PRK06871 96 NEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWL 175 (325)
T ss_pred HHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHH
Confidence 33332 36788999999998843 3333333332233445555554 445554433 334999999999999998
Q ss_pred HhhhCCCCCCCccchHHHHHHHHHHcCCchH
Q 007339 150 IDGVGSSILQVPILNKEIINEVVEECGCLPL 180 (607)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 180 (607)
....+. ..+.+...+..++|.|.
T Consensus 176 ~~~~~~--------~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 176 QAQSSA--------EISEILTALRINYGRPL 198 (325)
T ss_pred HHHhcc--------ChHHHHHHHHHcCCCHH
Confidence 876532 23346677889999995
No 152
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.83 E-value=0.0001 Score=75.24 Aligned_cols=149 Identities=12% Similarity=0.184 Sum_probs=83.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.++|++|+|||++|+.+++... .. |+.+.. .+ +...... ........+.+....
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~---~~-----~i~v~~----~~----l~~~~~g------~~~~~i~~~f~~a~~ 222 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETN---AT-----FIRVVG----SE----LVQKFIG------EGARLVRELFELARE 222 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhC---CC-----EEEeeh----HH----HhHhhcc------chHHHHHHHHHHHHh
Confidence 45689999999999999999999864 11 222211 11 1111100 011123334444435
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCCC--CCCCcEEEEEeCchhhhhh--c---ccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEPS--EENGCKLVITTRLYRVCRS--M---KCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~--~---~~~~-~~l~~L 140 (607)
..+.+|+||+++.... +..+...+.. ...+..||.||........ . .... ++++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 6678999999986521 1111111111 1235567777764433221 1 1222 889999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.++..++|..++....... ......+++.+.|+-
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~----~~~~~~la~~t~g~s 337 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLAD----DVDLEELAELTEGAS 337 (389)
T ss_pred CHHHHHHHHHHHhccCCCCC----cCCHHHHHHHcCCCC
Confidence 99999999998875542221 123566777777763
No 153
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.82 E-value=0.0003 Score=69.22 Aligned_cols=174 Identities=12% Similarity=0.103 Sum_probs=95.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC------------CCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC-Cccc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK------------PNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE-NEDK 71 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~------------~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~ 71 (607)
.+...++|+.|+||+++|..++...-.. ...+....|+..........+-..-+...+..... ..-.
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~ 105 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR 105 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc
Confidence 4678999999999999999998876322 12233356664321100000000111111110000 0111
Q ss_pred ccchHHHHHHHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCchhhhhhcc--cceeecccCCHH
Q 007339 72 VRRPGRLLGMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLYRVCRSMK--CKQVAVELLSKQ 143 (607)
Q Consensus 72 ~~~~~~l~~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~--~~~~~l~~L~~~ 143 (607)
.+.++.+.+.+. .+.+.++|+|+++.+.. ...+...+-.-....-|++|++...+..... +..+++.+++++
T Consensus 106 id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~ 185 (314)
T PRK07399 106 LEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDE 185 (314)
T ss_pred HHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhhceEEecCCCCHH
Confidence 123344444443 35788999999988743 3333333221123344556666555554433 333899999999
Q ss_pred HHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 007339 144 EAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVT 184 (607)
Q Consensus 144 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 184 (607)
+..+.+.+...... .......++...+|.|.....
T Consensus 186 ~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 186 QLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHH
Confidence 99999988753321 112246788999999965433
No 154
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00057 Score=67.02 Aligned_cols=157 Identities=13% Similarity=0.137 Sum_probs=86.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC---------------CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN---------------KFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENE 69 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~---------------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~ 69 (607)
...+.++|+.|+||+++|..++...--... ....+.|+....... +. .....
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~------------~~-k~~~~ 92 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRT------------GD-KLRTE 92 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcc------------cc-ccccc
Confidence 346889999999999999999877632210 011122221000000 00 00000
Q ss_pred ccccchHHHHHHHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeC-chhhhhhcc--cceeecccC
Q 007339 70 DKVRRPGRLLGMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTR-LYRVCRSMK--CKQVAVELL 140 (607)
Q Consensus 70 ~~~~~~~~l~~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR-~~~~~~~~~--~~~~~l~~L 140 (607)
-..+.++++.+.+. .+++.++|||+++.+.. ...+...+-.-..++.+|++|. ...+..... +..+.+...
T Consensus 93 I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~ 172 (319)
T PRK08769 93 IVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLP 172 (319)
T ss_pred ccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCc
Confidence 11223333333332 35678999999998832 3333333322223554555444 455554433 333899999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHH
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIV 183 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~ 183 (607)
+.+++.+.+... +. .++.+..++..++|.|+...
T Consensus 173 ~~~~~~~~L~~~-~~--------~~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 173 PAHEALAWLLAQ-GV--------SERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CHHHHHHHHHHc-CC--------ChHHHHHHHHHcCCCHHHHH
Confidence 999999888653 21 23446778999999998543
No 155
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.75 E-value=6.7e-05 Score=80.04 Aligned_cols=166 Identities=13% Similarity=0.148 Sum_probs=84.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC---CCCHHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ---PLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
.++++|+|++|+||||+++.++.... ++.+-|++... ..+...+...+.+.+... ....+....+...
T Consensus 110 ~~illL~GP~GsGKTTl~~~la~~l~-----~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~----~s~~~~F~~fl~~ 180 (637)
T TIGR00602 110 KRILLITGPSGCGKSTTIKILSKELG-----IQVQEWSNPTLPDFQKNDHKVTLSLESCFSNF----QSQIEVFSEFLLR 180 (637)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhh-----hHHHHHhhhhhhcccccccccchhhhhccccc----cchHHHHHHHHHH
Confidence 46799999999999999999998764 33344432110 001111111111111111 0111111111111
Q ss_pred H----------hcCCcEEEEEecCCCcc-----ccccccc-CCCCCCCCcEEEEEeCch-------------------hh
Q 007339 82 L----------KAKEKFVLILDDMWEAF-----PLQEIGI-PEPSEENGCKLVITTRLY-------------------RV 126 (607)
Q Consensus 82 ~----------~~~~~~LlVlDdv~~~~-----~~~~l~~-~~~~~~~~~~IliTtR~~-------------------~~ 126 (607)
. ..+++.+|++|++.+.. ....+.. .....+.-.-|+|+|-.. .+
T Consensus 181 a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eL 260 (637)
T TIGR00602 181 ATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEI 260 (637)
T ss_pred HHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCCccccccccccccchhcccCHhH
Confidence 1 13578899999996552 1222222 121222233455666221 11
Q ss_pred hhhcccceeecccCCHHHHHHHhHhhhCCCCC----CCccchHHHHHHHHHHcCCch
Q 007339 127 CRSMKCKQVAVELLSKQEAFNLFIDGVGSSIL----QVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 127 ~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~----~~~~~~~~~~~~i~~~~~g~P 179 (607)
...+....+.+.+++..+..+.+.+.+..... ......++..+.|+..++|--
T Consensus 261 ls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDi 317 (637)
T TIGR00602 261 LEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDI 317 (637)
T ss_pred hcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChH
Confidence 11223333889999999988888877754311 100113567888888887764
No 156
>PRK07261 topology modulation protein; Provisional
Probab=97.74 E-value=0.00012 Score=65.36 Aligned_cols=36 Identities=19% Similarity=0.378 Sum_probs=28.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEE
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWV 42 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv 42 (607)
.|+|+|++|+||||||++++..+....-+.|.+.|-
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 589999999999999999998865443445556663
No 157
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.74 E-value=0.00075 Score=72.93 Aligned_cols=51 Identities=10% Similarity=0.014 Sum_probs=33.4
Q ss_pred eecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHh
Q 007339 135 VAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAAS 188 (607)
Q Consensus 135 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~ 188 (607)
+.+.+++.+|..+++.+.+......- .++..+.|.+....-+.++..++..
T Consensus 348 i~~~pls~edi~~Il~~~a~~~~v~l---s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 348 VFFEPLTPEDIALIVLNAAEKINVHL---AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 78899999999999998876432111 4556666666555445565555433
No 158
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.73 E-value=0.00051 Score=67.15 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=80.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-----CHHHHHHHHHHHHccCCCCCcccccchHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-----DLFKLQTEIATALKQSLPENEDKVRRPGRL 78 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 78 (607)
.++.++|||++|+|||.+|+.++.... .. .+-++..+-. ......+++.+.....
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg---~~---~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~-------------- 206 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMG---IE---PIVMSAGELESENAGEPGKLIRQRYREAADI-------------- 206 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcC---CC---eEEEEHHHhhcCcCCcHHHHHHHHHHHHHHH--------------
Confidence 456799999999999999999999985 22 2333322211 1122222222211100
Q ss_pred HHHHhcCCcEEEEEecCCCccc--------c------cccccC------------C--CCCCCCcEEEEEeCchhhhhh-
Q 007339 79 LGMLKAKEKFVLILDDMWEAFP--------L------QEIGIP------------E--PSEENGCKLVITTRLYRVCRS- 129 (607)
Q Consensus 79 ~~~~~~~~~~LlVlDdv~~~~~--------~------~~l~~~------------~--~~~~~~~~IliTtR~~~~~~~- 129 (607)
. ..+++.++|+||+++-... . ..+... + .....+..||+||........
T Consensus 207 a--~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpA 284 (413)
T PLN00020 207 I--KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAP 284 (413)
T ss_pred h--hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHh
Confidence 0 0146789999999874311 0 011110 0 012345667888875554322
Q ss_pred -cc--cceeecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH
Q 007339 130 -MK--CKQVAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL 180 (607)
Q Consensus 130 -~~--~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 180 (607)
.+ .....+..=+.++-.+++..++..... ..+.+.+|++...|-|+
T Consensus 285 LlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l-----~~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 285 LIRDGRMEKFYWAPTREDRIGVVHGIFRDDGV-----SREDVVKLVDTFPGQPL 333 (413)
T ss_pred HcCCCCCCceeCCCCHHHHHHHHHHHhccCCC-----CHHHHHHHHHcCCCCCc
Confidence 11 111122333466667777766655322 24667788888888875
No 159
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00032 Score=67.44 Aligned_cols=159 Identities=13% Similarity=0.119 Sum_probs=91.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
++=|.+||++|.|||-||+++++... ..|+.+... ++++..-+. ....+..+.+....
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T~--------AtFIrvvgS--------ElVqKYiGE------GaRlVRelF~lAre 242 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQTD--------ATFIRVVGS--------ELVQKYIGE------GARLVRELFELARE 242 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccC--------ceEEEeccH--------HHHHHHhcc------chHHHHHHHHHHhh
Confidence 34478999999999999999999975 445655442 333333221 22355566666667
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCCCC--CCCcEEEEEeCchhhhhh----cccce--eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEPSE--ENGCKLVITTRLYRVCRS----MKCKQ--VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~--~~~~~IliTtR~~~~~~~----~~~~~--~~l~~L 140 (607)
..+.++++|.++-.-. .-++...+..| ..+.|||..|.-..+... .+... ++++.=
T Consensus 243 kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplP 322 (406)
T COG1222 243 KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLP 322 (406)
T ss_pred cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCC
Confidence 8899999999874411 11222333322 235688887775444332 12222 676633
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch----HHHHHHHHhh
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP----LAIVTVAASM 189 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lal~~~a~~l 189 (607)
+.+.-.++|.-++.+....+ .-..+.+++.+.|.- .|+..=|+++
T Consensus 323 d~~gR~~Il~IHtrkM~l~~----dvd~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 323 DEEGRAEILKIHTRKMNLAD----DVDLELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred CHHHHHHHHHHHhhhccCcc----CcCHHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 44444556666665543222 123456777777764 3444445544
No 160
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.72 E-value=0.00028 Score=72.03 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=78.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
++.|.|+-++||||+++.+....... +++++..... +...+ .+....+. ... ..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~------~iy~~~~d~~~~~~~l-~d~~~~~~-----------------~~~-~~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE------IIYINFDDLRLDRIEL-LDLLRAYI-----------------ELK-ER 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc------eEEEEecchhcchhhH-HHHHHHHH-----------------Hhh-cc
Confidence 89999999999999997777775421 6666544422 22222 11211111 111 12
Q ss_pred CcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhh-----hhcccce--eecccCCHHHHHHHh
Q 007339 86 EKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVC-----RSMKCKQ--VAVELLSKQEAFNLF 149 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~-----~~~~~~~--~~l~~L~~~ea~~L~ 149 (607)
++..++||.|+....|+.....+.+.+.. +|++|+-+..+. +...... +++-||+-.|-..+-
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 67899999999999999888888876766 888888866553 2233333 899999999887654
No 161
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.71 E-value=0.00044 Score=66.58 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=29.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKL 53 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 53 (607)
+.|.|.|++|+|||++|+.++.... . ....+++....+..++
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg---~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD---R---PVMLINGDAELTTSDL 63 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC---C---CEEEEeCCccCCHHHH
Confidence 4567999999999999999998642 1 2556666554444433
No 162
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.69 E-value=8.9e-05 Score=74.03 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=34.9
Q ss_pred cccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEecccch
Q 007339 526 EVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNL 596 (607)
Q Consensus 526 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l 596 (607)
++|+.|.+++|.....+ ...|.+|+.|.++.+. ...+. ++.. .-.+++ .|++.+|-++
T Consensus 156 sSLk~L~Is~c~~i~LP--~~LP~SLk~L~ls~n~-~~sLe-I~~~--------sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 156 PSLKTLSLTGCSNIILP--EKLPESLQSITLHIEQ-KTTWN-ISFE--------GFPDGL-DIDLQNSVLL 213 (426)
T ss_pred CcccEEEecCCCcccCc--ccccccCcEEEecccc-ccccc-Cccc--------cccccc-Eechhhhccc
Confidence 56899999988755322 3467899999998753 11111 1110 112456 8888888554
No 163
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.65 E-value=0.00012 Score=64.52 Aligned_cols=114 Identities=23% Similarity=0.242 Sum_probs=82.7
Q ss_pred CCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCccc-CCCCCCEEeccCCchhhhHH--hccCCCCCCeee
Q 007339 354 MNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLA-KLLALQYLDLEGTWIEEVLE--CMEMLENLSHLY 430 (607)
Q Consensus 354 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~ 430 (607)
+.....+||+.|.+..++ .|..++.|..|.+++|.++...|.+. .+++|..|.|.+|+|+++.+ .+..|++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 456677888888887665 47788888999999888887777544 55678999999998887653 466788888888
Q ss_pred ccCCcCCcCC---CccccCCCCCCEEEcccCcchhhhhHHH
Q 007339 431 LSSLQLKKFP---TGILPRLRNLYKLKLSFGNEALRETVEE 468 (607)
Q Consensus 431 l~~~~l~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 468 (607)
+-+|.++... .-.+.++++|++||...-....-...+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~ 160 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKEREEAEV 160 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhHHHHHHHHH
Confidence 8888765443 2346788888888888654433333333
No 164
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.65 E-value=0.00028 Score=71.72 Aligned_cols=149 Identities=12% Similarity=0.163 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.++|++|+|||++|+.+++... ..| +.+.. ..+ ...... .....+..+.+....
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~---~~f---i~i~~------s~l----~~k~~g------e~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTT---ATF---IRVVG------SEF----VQKYLG------EGPRMVRDVFRLARE 236 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC---CCE---EEEeh------HHH----HHHhcc------hhHHHHHHHHHHHHh
Confidence 46689999999999999999999864 222 22211 111 111110 011123344455556
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCCC--CCCCcEEEEEeCchhhhhh--c---ccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEPS--EENGCKLVITTRLYRVCRS--M---KCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~--~---~~~~-~~l~~L 140 (607)
..+.+++||+++.... +..+...+.. ...+..||.||........ . .... ++++.-
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 7789999999875410 1111111111 1235567777774443321 1 2222 788888
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.++..++|..+........ +-....+++.+.|+.
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~----dvd~~~la~~t~g~s 351 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSE----EVDLEDFVSRPEKIS 351 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCc----ccCHHHHHHHcCCCC
Confidence 88888888887765432221 123556777776663
No 165
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.64 E-value=9.1e-05 Score=65.17 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=35.6
Q ss_pred cCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccC-CCCCCeeeccCCcCCcCCC-ccccCCCCCCEEEcc
Q 007339 379 NLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEM-LENLSHLYLSSLQLKKFPT-GILPRLRNLYKLKLS 456 (607)
Q Consensus 379 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~-l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~ 456 (607)
+...++|++|.+. ..+.+.++..|.+|.+++|+|+.+-+.+.. +++|+.|.|.+|++.++.. .-+..|++|+.|.+-
T Consensus 43 ~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3344455544322 233444555555555555555544443332 2445555555554433221 012344455555444
Q ss_pred cCc
Q 007339 457 FGN 459 (607)
Q Consensus 457 ~~~ 459 (607)
+|.
T Consensus 122 ~Np 124 (233)
T KOG1644|consen 122 GNP 124 (233)
T ss_pred CCc
Confidence 443
No 166
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.0012 Score=65.71 Aligned_cols=161 Identities=10% Similarity=0.037 Sum_probs=89.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----C---CcccccchHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP----E---NEDKVRRPGR 77 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~---~~~~~~~~~~ 77 (607)
...+.++|+.|+||+++|..++...--... .+ .........++.+...-..+.. . ..-..+.++.
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~-~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~ 95 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQP-QG-------HKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVRE 95 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCC-CC-------CCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHH
Confidence 456789999999999999999887732100 00 0011111222222221111100 0 0111223333
Q ss_pred HHHHHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcE-EEEEeCchhhhhhcc--cceeecccCCHHHHHHH
Q 007339 78 LLGMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCK-LVITTRLYRVCRSMK--CKQVAVELLSKQEAFNL 148 (607)
Q Consensus 78 l~~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~~--~~~~~l~~L~~~ea~~L 148 (607)
+.+.+. .+++.++|+|+++.+.. ...+...+-.-..++. |++|++...+..... +..+.+.+++.+++.+.
T Consensus 96 l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~ 175 (334)
T PRK07993 96 VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTW 175 (334)
T ss_pred HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHH
Confidence 333332 36788999999998843 3334333332223444 445555455554433 33489999999999988
Q ss_pred hHhhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 149 FIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
+....+. ..+.+..++..++|.|..
T Consensus 176 L~~~~~~--------~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 176 LSREVTM--------SQDALLAALRLSAGAPGA 200 (334)
T ss_pred HHHccCC--------CHHHHHHHHHHcCCCHHH
Confidence 8654332 334577889999999953
No 167
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.62 E-value=0.00019 Score=73.38 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=82.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-+.|+|++|+|||++|+.+++... ..| +.+..+. + ...... .....+..+......
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~---~~f---i~V~~se------L----~~k~~G------e~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETS---ATF---LRVVGSE------L----IQKYLG------DGPKLVRELFRVAEE 274 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC---CCE---EEEecch------h----hhhhcc------hHHHHHHHHHHHHHh
Confidence 35688999999999999999999864 222 2222111 1 111100 011123334444445
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCCC--CCCCcEEEEEeCchhhhhhc-----ccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEPS--EENGCKLVITTRLYRVCRSM-----KCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~~-----~~~~-~~l~~L 140 (607)
+.+.+++||+++.... +..+...+.. ...+.+||.||......... .... +++..-
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~P 354 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNP 354 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCC
Confidence 6788999999864411 0011111111 12355788888754443321 1222 888999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.++..++|..++....... .-....++..+.|+-
T Consensus 355 d~~~R~~Il~~~~~k~~l~~----dvdl~~la~~t~g~s 389 (438)
T PTZ00361 355 DEKTKRRIFEIHTSKMTLAE----DVDLEEFIMAKDELS 389 (438)
T ss_pred CHHHHHHHHHHHHhcCCCCc----CcCHHHHHHhcCCCC
Confidence 99999999998775542221 123455666666553
No 168
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.62 E-value=0.00018 Score=72.67 Aligned_cols=89 Identities=19% Similarity=0.154 Sum_probs=57.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh-
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK- 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~- 83 (607)
.+.|.++|++|+|||++|+.+++..... ..++.+.||.++...+..++.... ......-........++.....
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsySYeDFI~G~----rP~~vgy~~~~G~f~~~~~~A~~ 268 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSYSYEDFIQGY----RPNGVGFRRKDGIFYNFCQQAKE 268 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccccHHHHhccc----CCCCCCeEecCchHHHHHHHHHh
Confidence 3567889999999999999999987543 567789999998877755554322 1110000111122233333332
Q ss_pred -cCCcEEEEEecCCCc
Q 007339 84 -AKEKFVLILDDMWEA 98 (607)
Q Consensus 84 -~~~~~LlVlDdv~~~ 98 (607)
.++++++|+|+++..
T Consensus 269 ~p~~~~vliIDEINRa 284 (459)
T PRK11331 269 QPEKKYVFIIDEINRA 284 (459)
T ss_pred cccCCcEEEEehhhcc
Confidence 247899999999765
No 169
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=4.3e-06 Score=68.46 Aligned_cols=101 Identities=23% Similarity=0.142 Sum_probs=57.5
Q ss_pred eEEEccCCCCccCCc---cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccC
Q 007339 358 KVLNLSHTDIEVLPS---SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSS 433 (607)
Q Consensus 358 ~~L~l~~~~~~~l~~---~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~ 433 (607)
-.++|+.|.+-.+++ .+....+|...+|++|.+..-.+ ...+++..+.|++++|.++++|..+..++.|+.|+++.
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 345555665443333 33444555556666665444333 33455566666666666666666666666666666666
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCc
Q 007339 434 LQLKKFPTGILPRLRNLYKLKLSFGN 459 (607)
Q Consensus 434 ~~l~~~~~~~~~~l~~L~~L~l~~~~ 459 (607)
|.+...|..++ .+.+|-.|+..+|.
T Consensus 110 N~l~~~p~vi~-~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 110 NPLNAEPRVIA-PLIKLDMLDSPENA 134 (177)
T ss_pred CccccchHHHH-HHHhHHHhcCCCCc
Confidence 66666655443 35666666555543
No 170
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.61 E-value=0.00031 Score=63.09 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=56.3
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
+++.+-+.|.||+|+||||-+..+++..-.. .+-+++.-.+++....++.+...|-.-......-
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LLG~-~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~l-------------- 109 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELLGD-SYKEAVLELNASDERGIDVVRNKIKMFAQKKVTL-------------- 109 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHhCh-hhhhHhhhccCccccccHHHHHHHHHHHHhhccC--------------
Confidence 4567789999999999999999998887532 3455677777777766665555443222211110
Q ss_pred HhcCCcEEEEEecCCCcc
Q 007339 82 LKAKEKFVLILDDMWEAF 99 (607)
Q Consensus 82 ~~~~~~~LlVlDdv~~~~ 99 (607)
-.++..++|||..+.+.
T Consensus 110 -p~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 110 -PPGRHKIIILDEADSMT 126 (333)
T ss_pred -CCCceeEEEeeccchhh
Confidence 04678899999999884
No 171
>CHL00176 ftsH cell division protein; Validated
Probab=97.60 E-value=0.00084 Score=72.37 Aligned_cols=147 Identities=12% Similarity=0.146 Sum_probs=83.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+-|.++|++|+|||++|+.++...... .+.++.++ +.... .+ ........+.+.....
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~e~~~p------~i~is~s~------f~~~~---~g-------~~~~~vr~lF~~A~~~ 274 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAGEAEVP------FFSISGSE------FVEMF---VG-------VGAARVRDLFKKAKEN 274 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC------eeeccHHH------HHHHh---hh-------hhHHHHHHHHHHHhcC
Confidence 458999999999999999999876421 12222111 11100 00 0111234445555567
Q ss_pred CcEEEEEecCCCccc----------------ccccccCCCC--CCCCcEEEEEeCchhhhhh-----cccce-eecccCC
Q 007339 86 EKFVLILDDMWEAFP----------------LQEIGIPEPS--EENGCKLVITTRLYRVCRS-----MKCKQ-VAVELLS 141 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~-----~~~~~-~~l~~L~ 141 (607)
.+++|+||+++.... +..+...+.. ...+..||.||........ ..... +.++.-+
T Consensus 275 ~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd 354 (638)
T CHL00176 275 SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPD 354 (638)
T ss_pred CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCC
Confidence 889999999975511 1122212211 2234556666665333221 12222 7888888
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCL 178 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 178 (607)
.++-.+++..++...... .+.....+++.+.|.
T Consensus 355 ~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 355 REGRLDILKVHARNKKLS----PDVSLELIARRTPGF 387 (638)
T ss_pred HHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCC
Confidence 999999998887653211 345567888888874
No 172
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.58 E-value=0.00046 Score=66.86 Aligned_cols=141 Identities=14% Similarity=0.154 Sum_probs=88.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCccc---ccchHHHHHHHh
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDK---VRRPGRLLGMLK 83 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~l~~~~~ 83 (607)
.|.|+|-+|.|||.+.+++.+.... ..+|+++.+.++...+++.|+............. .+........+.
T Consensus 32 ~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~ 105 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLV 105 (438)
T ss_pred eEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHH
Confidence 3589999999999999999998732 2789999999999999999999996322211111 112222222222
Q ss_pred -------cCCcEEEEEecCCCcccccccccC----CC-CCCCCcEEEEEeCchhhhhh---cccce---eecccCCHHHH
Q 007339 84 -------AKEKFVLILDDMWEAFPLQEIGIP----EP-SEENGCKLVITTRLYRVCRS---MKCKQ---VAVELLSKQEA 145 (607)
Q Consensus 84 -------~~~~~LlVlDdv~~~~~~~~l~~~----~~-~~~~~~~IliTtR~~~~~~~---~~~~~---~~l~~L~~~ea 145 (607)
.++.++||+||++...+.+...-. +. -.....-+|+++-....... .++.. +..+.-+.+|.
T Consensus 106 q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~ 185 (438)
T KOG2543|consen 106 QWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEET 185 (438)
T ss_pred hhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHH
Confidence 246899999999988765543211 00 01122335555553333222 23322 56788889999
Q ss_pred HHHhHhhh
Q 007339 146 FNLFIDGV 153 (607)
Q Consensus 146 ~~L~~~~~ 153 (607)
.+++.+--
T Consensus 186 ~~Il~~~~ 193 (438)
T KOG2543|consen 186 QVILSRDN 193 (438)
T ss_pred HHHHhcCC
Confidence 88885443
No 173
>PRK08116 hypothetical protein; Validated
Probab=97.58 E-value=0.00023 Score=68.46 Aligned_cols=100 Identities=28% Similarity=0.315 Sum_probs=57.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
..+.|+|.+|+|||.||..+++....+ ...+++++ ..+++..+........ ......+.+.+ .+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~------~~~ll~~i~~~~~~~~------~~~~~~~~~~l-~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN------FPQLLNRIKSTYKSSG------KEDENEIIRSL-VN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE------HHHHHHHHHHHHhccc------cccHHHHHHHh-cC
Confidence 458999999999999999999998633 23467775 3344555544443211 11223344444 23
Q ss_pred CcEEEEEecCCC--ccccc--ccccCCCC-CCCCcEEEEEeC
Q 007339 86 EKFVLILDDMWE--AFPLQ--EIGIPEPS-EENGCKLVITTR 122 (607)
Q Consensus 86 ~~~LlVlDdv~~--~~~~~--~l~~~~~~-~~~~~~IliTtR 122 (607)
- =||||||+.. ..+|. .+...+.. ...+..+||||.
T Consensus 179 ~-dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 179 A-DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred C-CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 2 3899999943 33322 12211211 123456899998
No 174
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.57 E-value=0.00039 Score=72.39 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.++|++|+|||.+|+.++...... .+-++++. +. ..... .....+.++.+....
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~------~~~l~~~~----------l~----~~~vG--ese~~l~~~f~~A~~ 316 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLP------LLRLDVGK----------LF----GGIVG--ESESRMRQMIRIAEA 316 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCC------EEEEEhHH----------hc----ccccC--hHHHHHHHHHHHHHh
Confidence 3558999999999999999999997521 23333221 10 00000 111123344444445
Q ss_pred CCcEEEEEecCCCcccc--------------cccccCCCCCCCCcEEEEEeCchhhhh-----hcccce-eecccCCHHH
Q 007339 85 KEKFVLILDDMWEAFPL--------------QEIGIPEPSEENGCKLVITTRLYRVCR-----SMKCKQ-VAVELLSKQE 144 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~~--------------~~l~~~~~~~~~~~~IliTtR~~~~~~-----~~~~~~-~~l~~L~~~e 144 (607)
..+++|+||+++....- ..+...+.....+..||.||....... ...... +.++.=+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 67899999999854210 001111111223344666776443221 112333 6777778889
Q ss_pred HHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 145 AFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 145 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
-.++|..+..+..... ......+.+++.+.|+.
T Consensus 397 R~~Il~~~l~~~~~~~--~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 397 REKIFKIHLQKFRPKS--WKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHhhcCCCc--ccccCHHHHHhhcCCCC
Confidence 9999988875542111 01234667777777764
No 175
>PRK04132 replication factor C small subunit; Provisional
Probab=97.56 E-value=0.0011 Score=72.99 Aligned_cols=153 Identities=9% Similarity=0.066 Sum_probs=96.1
Q ss_pred EEc--CCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCCc
Q 007339 10 VWG--MGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKEK 87 (607)
Q Consensus 10 I~G--~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (607)
+.| |.++||||+|..+++.+-.. +.-..++.++++.......+.. +++.+.....- ...+.
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR~-iIk~~a~~~~~---------------~~~~~ 631 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIRE-KVKEFARTKPI---------------GGASF 631 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHHH-HHHHHHhcCCc---------------CCCCC
Confidence 347 88999999999999997321 1112378888887666654443 33333221110 02346
Q ss_pred EEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeC-chhhhhhcc--cceeecccCCHHHHHHHhHhhhCCCCCCCcc
Q 007339 88 FVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTR-LYRVCRSMK--CKQVAVELLSKQEAFNLFIDGVGSSILQVPI 162 (607)
Q Consensus 88 ~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR-~~~~~~~~~--~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~ 162 (607)
.++|||+++.+. +...++..+-.-...+++|++|. ...+..... +..+++.+++.++..+.+.+.+......-
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i-- 709 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL-- 709 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC--
Confidence 899999999884 33444433332233445555444 444433332 33389999999999999888875543222
Q ss_pred chHHHHHHHHHHcCCchHHH
Q 007339 163 LNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 163 ~~~~~~~~i~~~~~g~PLal 182 (607)
.++.+..|++.++|-+...
T Consensus 710 -~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 -TEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred -CHHHHHHHHHHcCCCHHHH
Confidence 4678999999999987443
No 176
>PRK08118 topology modulation protein; Reviewed
Probab=97.54 E-value=0.00015 Score=64.50 Aligned_cols=37 Identities=30% Similarity=0.579 Sum_probs=31.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEE
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWV 42 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv 42 (607)
+.|.|.|++|+||||||+.+++.......++|.++|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 3589999999999999999999987655667777763
No 177
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.53 E-value=6.1e-05 Score=49.76 Aligned_cols=34 Identities=38% Similarity=0.498 Sum_probs=16.8
Q ss_pred CceEEEccCCCCccCCccccCCccCcEeeccccc
Q 007339 356 GLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCG 389 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~ 389 (607)
+|++|++++|.|+.+|..+.++++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4555555555555555445555555555555544
No 178
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.52 E-value=0.00088 Score=71.05 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=83.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+-+.++|++|+|||++|+.++..... . ++.++. .++.. .... ........+.+.....
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~---~-----~~~i~~----~~~~~----~~~g------~~~~~l~~~f~~a~~~ 146 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGV---P-----FFSISG----SDFVE----MFVG------VGASRVRDLFEQAKKN 146 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC---C-----eeeccH----HHHHH----HHhc------ccHHHHHHHHHHHHhc
Confidence 34889999999999999999988642 1 222221 11111 1100 0111233444444456
Q ss_pred CcEEEEEecCCCccc----------------ccccccCCC--CCCCCcEEEEEeCchhhhh-----hcccce-eecccCC
Q 007339 86 EKFVLILDDMWEAFP----------------LQEIGIPEP--SEENGCKLVITTRLYRVCR-----SMKCKQ-VAVELLS 141 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~~~IliTtR~~~~~~-----~~~~~~-~~l~~L~ 141 (607)
.+.+|+||+++.... +..+...+. ....+..||.||....... ...... ++++..+
T Consensus 147 ~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd 226 (495)
T TIGR01241 147 APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226 (495)
T ss_pred CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
Confidence 778999999976521 011111111 1123445666665433221 112233 7888888
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHH
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTV 185 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 185 (607)
.++-.+++..++...... .+.....+++.+.|+ +-.|..+
T Consensus 227 ~~~R~~il~~~l~~~~~~----~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 227 IKGREEILKVHAKNKKLA----PDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred HHHHHHHHHHHHhcCCCC----cchhHHHHHHhCCCCCHHHHHHH
Confidence 888999998877544222 123456788888775 3334333
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0017 Score=64.76 Aligned_cols=140 Identities=12% Similarity=0.079 Sum_probs=72.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCC-----CCCcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSL-----PENEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 79 (607)
.+...++|+.|+|||++|+.++...-.. ...+.. +......++.+...-..+. .......+.+..+.
T Consensus 28 ~ha~Lf~G~~G~gk~~~a~~la~~l~c~-~~~~~~-------~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~ 99 (329)
T PRK08058 28 SHAYLFEGAKGTGKKATALWLAKSLFCL-ERNGVE-------PCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLK 99 (329)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCC-------CCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHH
Confidence 4567899999999999999998876321 100000 0011111221211110000 00001112223333
Q ss_pred HHHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCc-hhhhhhc--ccceeecccCCHHHHHHHhH
Q 007339 80 GMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRL-YRVCRSM--KCKQVAVELLSKQEAFNLFI 150 (607)
Q Consensus 80 ~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~-~~~~~~~--~~~~~~l~~L~~~ea~~L~~ 150 (607)
+.+. .+.+.++|+|+++.+.. ...+...+..-...+.+|++|.+ ..+.... ++..+++.+++.++..+.+.
T Consensus 100 ~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 100 EEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred HHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 3221 35678899999987743 33444444433345556655543 3333332 23338999999999988886
Q ss_pred hh
Q 007339 151 DG 152 (607)
Q Consensus 151 ~~ 152 (607)
+.
T Consensus 180 ~~ 181 (329)
T PRK08058 180 EE 181 (329)
T ss_pred Hc
Confidence 53
No 180
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0029 Score=63.92 Aligned_cols=127 Identities=16% Similarity=0.161 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
+...+.+.|++|+|||+||.+++.. ..|..|=-++....-...+. .+...+..+.+..-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~miG~sEs----------------aKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMIGLSES----------------AKCAHIKKIFEDAY 595 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHccCccHH----------------HHHHHHHHHHHHhh
Confidence 4556889999999999999999987 45766555554332111111 11111111222111
Q ss_pred cCCcEEEEEecCCCcccccccccCCCC---------------CCCCcEEEEEeCchhhhhhcccce-----eecccCCH-
Q 007339 84 AKEKFVLILDDMWEAFPLQEIGIPEPS---------------EENGCKLVITTRLYRVCRSMKCKQ-----VAVELLSK- 142 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~~~~l~~~~~~---------------~~~~~~IliTtR~~~~~~~~~~~~-----~~l~~L~~- 142 (607)
+.+--.+|+||++..-+|-.+++.+.. .+..--|+-||....+...++-.. ++++.++.
T Consensus 596 kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 596 KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 456678999999998887777655432 223333556666677777765322 78888886
Q ss_pred HHHHHHhHh
Q 007339 143 QEAFNLFID 151 (607)
Q Consensus 143 ~ea~~L~~~ 151 (607)
++..+.+..
T Consensus 676 ~~~~~vl~~ 684 (744)
T KOG0741|consen 676 EQLLEVLEE 684 (744)
T ss_pred HHHHHHHHH
Confidence 666666643
No 181
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.028 Score=56.44 Aligned_cols=173 Identities=13% Similarity=0.167 Sum_probs=105.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
+..+.+-|.|.+|.|||.+...++.+....... ..++++++..-....+++..|...+...........+....+....
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~ 251 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT 251 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 345678899999999999999999987643222 2478899888778888999888888443333333333334444444
Q ss_pred hcC-CcEEEEEecCCCccc--ccc--cccCCCCCCCCcEEEEEeC--c----hhhhhhc----c--cceeecccCCHHHH
Q 007339 83 KAK-EKFVLILDDMWEAFP--LQE--IGIPEPSEENGCKLVITTR--L----YRVCRSM----K--CKQVAVELLSKQEA 145 (607)
Q Consensus 83 ~~~-~~~LlVlDdv~~~~~--~~~--l~~~~~~~~~~~~IliTtR--~----~~~~~~~----~--~~~~~l~~L~~~ea 145 (607)
.+. ..+|+|+|.+|..-. ... ....|++. .++++|+..- . ++..... . ...+..++.+.++-
T Consensus 252 ~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI 330 (529)
T KOG2227|consen 252 KQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQI 330 (529)
T ss_pred hcccceEEEEechhhHHhhcccceeeeehhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHH
Confidence 333 479999999987621 111 11223322 3445443322 1 1111111 1 12267899999999
Q ss_pred HHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 146 FNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
.+++..+........ +....++.++++|.|.-
T Consensus 331 ~~Il~~rl~~~~t~~--~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 331 VEILQQRLSEESTSI--FLNAAIELCARKVAAPS 362 (529)
T ss_pred HHHHHHHHhcccccc--cchHHHHHHHHHhccCc
Confidence 999998885542221 14445666666665544
No 182
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.013 Score=54.81 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=82.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
+...-+.++||+|.||||||.-+++.+.+. + -+.......-...+..++..+
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn---~----k~tsGp~leK~gDlaaiLt~L--------------------- 101 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVN---L----KITSGPALEKPGDLAAILTNL--------------------- 101 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCC---e----EecccccccChhhHHHHHhcC---------------------
Confidence 345568999999999999999999998632 1 111111111111111122111
Q ss_pred hcCCcEEEEEecCCCcc-cccccccCCC---------CCC-----------CCcEEEEEeCchhhhhhcc--cce-eecc
Q 007339 83 KAKEKFVLILDDMWEAF-PLQEIGIPEP---------SEE-----------NGCKLVITTRLYRVCRSMK--CKQ-VAVE 138 (607)
Q Consensus 83 ~~~~~~LlVlDdv~~~~-~~~~l~~~~~---------~~~-----------~~~~IliTtR~~~~~~~~~--~~~-~~l~ 138 (607)
.+.=+|++|.+..+. .++++..+-- ..+ +-.-|=-|||.-.+..... ... .+++
T Consensus 102 --e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rle 179 (332)
T COG2255 102 --EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLE 179 (332)
T ss_pred --CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeeeee
Confidence 233455566665441 1222111000 011 2233557888443333221 222 5788
Q ss_pred cCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH
Q 007339 139 LLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL 180 (607)
Q Consensus 139 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 180 (607)
-.+.+|-.++..+.+..-...- .++.+.+|+++..|-|.
T Consensus 180 fY~~~eL~~Iv~r~a~~l~i~i---~~~~a~eIA~rSRGTPR 218 (332)
T COG2255 180 FYTVEELEEIVKRSAKILGIEI---DEEAALEIARRSRGTPR 218 (332)
T ss_pred cCCHHHHHHHHHHHHHHhCCCC---ChHHHHHHHHhccCCcH
Confidence 8899999999988885544444 67889999999999995
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.47 E-value=0.00049 Score=60.84 Aligned_cols=118 Identities=15% Similarity=0.182 Sum_probs=63.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC-----------------CCCeEEEEEeCCC---CCHHHHHHHHHHHHccC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN-----------------KFNDVIWVTVSQP---LDLFKLQTEIATALKQS 64 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~-----------------~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~ 64 (607)
...+.++|+.|+||+++|..++...-.... ....+.|+..... ...+++. .+...+...
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir-~i~~~~~~~ 97 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIR-EIIEFLSLS 97 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHH-HHHHHCTSS
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHH-HHHHHHHHH
Confidence 346799999999999999999988754321 1233555543332 2233332 333333322
Q ss_pred CCCCcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchh-hhhhcc--cceeeccc
Q 007339 65 LPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYR-VCRSMK--CKQVAVEL 139 (607)
Q Consensus 65 ~~~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~-~~~~~~--~~~~~l~~ 139 (607)
.. .++.-++|||+++.+. ....++..+-.-..++++|++|++.. +..... +..+.+.+
T Consensus 98 ~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ 160 (162)
T PF13177_consen 98 PS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRP 160 (162)
T ss_dssp -T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred Hh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence 11 3568899999999873 34444444433345777777777544 333222 22255555
Q ss_pred C
Q 007339 140 L 140 (607)
Q Consensus 140 L 140 (607)
+
T Consensus 161 l 161 (162)
T PF13177_consen 161 L 161 (162)
T ss_dssp -
T ss_pred C
Confidence 4
No 184
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.45 E-value=0.00016 Score=65.90 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=21.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEK 32 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 32 (607)
...+.+.|+|++|+|||+|.++++......
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 456889999999999999999999998754
No 185
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0011 Score=69.18 Aligned_cols=158 Identities=12% Similarity=0.066 Sum_probs=90.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL--DLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
.-|.|.|+.|+|||+||+++++.+.+ ...--+.++++++-. ....+++.+-..+ ....
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k--~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf------------------se~~ 491 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSK--DLIAHVEIVSCSTLDGSSLEKIQKFLNNVF------------------SEAL 491 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhcc--ccceEEEEEechhccchhHHHHHHHHHHHH------------------HHHH
Confidence 45889999999999999999999863 222236666766532 2333333322222 2223
Q ss_pred cCCcEEEEEecCCCccc--------cc----ccccCCC-----CCCCCcE--EEEEeCchhhhhh----cc-cce-eecc
Q 007339 84 AKEKFVLILDDMWEAFP--------LQ----EIGIPEP-----SEENGCK--LVITTRLYRVCRS----MK-CKQ-VAVE 138 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~--------~~----~l~~~~~-----~~~~~~~--IliTtR~~~~~~~----~~-~~~-~~l~ 138 (607)
.-.+-++||||++-... |. .+...+. ....+.+ +|.|......... .. ... ..|+
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 45688999999975422 11 0000000 0123333 4444442222111 11 112 6899
Q ss_pred cCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHHH
Q 007339 139 LLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTVA 186 (607)
Q Consensus 139 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~a 186 (607)
.+...+-.+++...+....... ..+..+-+..+|+|. |.-+.++.
T Consensus 572 ap~~~~R~~IL~~~~s~~~~~~---~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 572 APAVTRRKEILTTIFSKNLSDI---TMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred CcchhHHHHHHHHHHHhhhhhh---hhHHHHHHHHhcCCccchhHHHHH
Confidence 9999999999888876654332 445566688899876 66666554
No 186
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.003 Score=62.66 Aligned_cols=87 Identities=17% Similarity=0.246 Sum_probs=54.6
Q ss_pred CCcEEEEEecCCCcc--cccccccCCCCCCCCc-EEEEEeCchhhhhhcc--cceeecccCCHHHHHHHhHhhhCCCCCC
Q 007339 85 KEKFVLILDDMWEAF--PLQEIGIPEPSEENGC-KLVITTRLYRVCRSMK--CKQVAVELLSKQEAFNLFIDGVGSSILQ 159 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~-~IliTtR~~~~~~~~~--~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 159 (607)
++..++|+|+++.+. ....+...+-.-..++ -|++|++...+..... +..+.+.+++.++..+.+... +..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~~--- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GVA--- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CCC---
Confidence 567899999999883 3344433333223344 4556666555554432 334899999999999988765 211
Q ss_pred CccchHHHHHHHHHHcCCchHHH
Q 007339 160 VPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 160 ~~~~~~~~~~~i~~~~~g~PLal 182 (607)
. .+.++...+|.|...
T Consensus 207 ----~---~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 207 ----D---ADALLAEAGGAPLAA 222 (342)
T ss_pred ----h---HHHHHHHcCCCHHHH
Confidence 1 123577889999643
No 187
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00088 Score=68.71 Aligned_cols=125 Identities=15% Similarity=0.225 Sum_probs=75.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCCc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKEK 87 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (607)
|.+|||+|+|||-||+++++.-. .-|+++..+ +++...-+ .....+.++.++.+...+
T Consensus 548 vLL~GPPGCGKTLlAKAVANEag--------~NFisVKGP--------ELlNkYVG------ESErAVR~vFqRAR~saP 605 (802)
T KOG0733|consen 548 VLLCGPPGCGKTLLAKAVANEAG--------ANFISVKGP--------ELLNKYVG------ESERAVRQVFQRARASAP 605 (802)
T ss_pred eEEeCCCCccHHHHHHHHhhhcc--------CceEeecCH--------HHHHHHhh------hHHHHHHHHHHHhhcCCC
Confidence 78999999999999999999975 335666664 22222211 122356677777778899
Q ss_pred EEEEEecCCCccc-------------ccccccCCCCC--CCCcEEEEEeCchhhhh-h---c-ccce-eecccCCHHHHH
Q 007339 88 FVLILDDMWEAFP-------------LQEIGIPEPSE--ENGCKLVITTRLYRVCR-S---M-KCKQ-VAVELLSKQEAF 146 (607)
Q Consensus 88 ~LlVlDdv~~~~~-------------~~~l~~~~~~~--~~~~~IliTtR~~~~~~-~---~-~~~~-~~l~~L~~~ea~ 146 (607)
++|+||.++.+.. +.+++..+... ..|.-||-.|.-+.+.. . . +... ..++.=..+|-.
T Consensus 606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~ 685 (802)
T KOG0733|consen 606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERV 685 (802)
T ss_pred eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHH
Confidence 9999999986522 22222222211 12334454443233221 1 1 2222 455556678888
Q ss_pred HHhHhhhC
Q 007339 147 NLFIDGVG 154 (607)
Q Consensus 147 ~L~~~~~~ 154 (607)
++++....
T Consensus 686 ~ILK~~tk 693 (802)
T KOG0733|consen 686 AILKTITK 693 (802)
T ss_pred HHHHHHhc
Confidence 88888775
No 188
>PRK08181 transposase; Validated
Probab=97.43 E-value=0.00018 Score=68.85 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=55.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
..-+.|+|++|+|||.||..+++....+ .+ .+.|+++ .++...+..... .....+..+.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~-~v~f~~~------~~L~~~l~~a~~---------~~~~~~~l~~l-- 165 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN--GW-RVLFTRT------TDLVQKLQVARR---------ELQLESAIAKL-- 165 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc--CC-ceeeeeH------HHHHHHHHHHHh---------CCcHHHHHHHH--
Confidence 3558999999999999999999876432 22 3566653 344444433211 01122334443
Q ss_pred CCcEEEEEecCCCccc--c--cccccCCCCCCCCcEEEEEeCc
Q 007339 85 KEKFVLILDDMWEAFP--L--QEIGIPEPSEENGCKLVITTRL 123 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~--~--~~l~~~~~~~~~~~~IliTtR~ 123 (607)
.+--||||||+..... + ..+...+.....+..+||||..
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 2345999999964421 1 1222222211112358899883
No 189
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.43 E-value=0.0001 Score=63.58 Aligned_cols=76 Identities=20% Similarity=0.173 Sum_probs=45.5
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCCc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKEK 87 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (607)
|.|+|++|+|||+||+.+++.... ...-+.+....+..++....--. .. ...-........+ .+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~------~~~~i~~~~~~~~~dl~g~~~~~-~~--~~~~~~~~l~~a~------~~~ 66 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR------PVIRINCSSDTTEEDLIGSYDPS-NG--QFEFKDGPLVRAM------RKG 66 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC------EEEEEE-TTTSTHHHHHCEEET--TT--TTCEEE-CCCTTH------HEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc------ceEEEEeccccccccceeeeeec-cc--ccccccccccccc------cce
Confidence 689999999999999999999832 25666777776766555422211 00 0000111111111 178
Q ss_pred EEEEEecCCCc
Q 007339 88 FVLILDDMWEA 98 (607)
Q Consensus 88 ~LlVlDdv~~~ 98 (607)
.++|||+++..
T Consensus 67 ~il~lDEin~a 77 (139)
T PF07728_consen 67 GILVLDEINRA 77 (139)
T ss_dssp EEEEESSCGG-
T ss_pred eEEEECCcccC
Confidence 99999999844
No 190
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.41 E-value=0.00048 Score=64.14 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQT 55 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 55 (607)
..++.|+|++|+|||++|.+++..... .-..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCC-CCHHHHHH
Confidence 568999999999999999999988642 235699999976 55554444
No 191
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0029 Score=62.02 Aligned_cols=160 Identities=9% Similarity=0.057 Sum_probs=87.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC-------CCcccccchHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP-------ENEDKVRRPGR 77 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~~ 77 (607)
...+.++|+.|+||+++|..++...--.... + .+......++.+...-..+.. ...-..+.++.
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~--------~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~ 95 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQ-S--------EACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQ 95 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-C--------CCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHH
Confidence 4568899999999999999998876322100 0 011111222222222111110 00011122233
Q ss_pred HHHHHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcE-EEEEeCchhhhhhccc--ceeecccCCHHHHHHH
Q 007339 78 LLGMLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCK-LVITTRLYRVCRSMKC--KQVAVELLSKQEAFNL 148 (607)
Q Consensus 78 l~~~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~~~--~~~~l~~L~~~ea~~L 148 (607)
+.+... .+...++|+|+++.+. ....+...+-.-..++. |++|++...+...... ..+.+.+++.+++.+.
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~ 175 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQW 175 (319)
T ss_pred HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHH
Confidence 332321 3567899999999883 33344333332223444 4455555555554433 3389999999999998
Q ss_pred hHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 007339 149 FIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVT 184 (607)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 184 (607)
+.... .. ....+++.++|.|+....
T Consensus 176 L~~~~-~~----------~~~~~l~l~~G~p~~A~~ 200 (319)
T PRK06090 176 LKGQG-IT----------VPAYALKLNMGSPLKTLA 200 (319)
T ss_pred HHHcC-Cc----------hHHHHHHHcCCCHHHHHH
Confidence 86531 11 134678899999986443
No 192
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.41 E-value=0.00091 Score=66.16 Aligned_cols=91 Identities=12% Similarity=0.132 Sum_probs=60.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCe-EEEEEeCC-CCCHHHHHHHHHHHHccCCCCCcccc-----cchHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFND-VIWVTVSQ-PLDLFKLQTEIATALKQSLPENEDKV-----RRPGRL 78 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~l 78 (607)
..+.|+|++|+|||||++.+++.... ++.+. ++|+-+.+ ..+..++.+.+...+..+........ .....+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~--~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~ 211 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAA--NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER 211 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence 45799999999999999999998752 23344 46666654 45688888888887765432221111 112223
Q ss_pred HHHHh-cCCcEEEEEecCCCc
Q 007339 79 LGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 79 ~~~~~-~~~~~LlVlDdv~~~ 98 (607)
...+. .+++++||+|++...
T Consensus 212 Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 212 AKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHcCCCEEEEEeCcHHH
Confidence 33332 689999999999654
No 193
>PTZ00202 tuzin; Provisional
Probab=97.40 E-value=0.00083 Score=67.03 Aligned_cols=137 Identities=16% Similarity=0.134 Sum_probs=78.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh-
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK- 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~- 83 (607)
.+++.|.|++|+|||||++.+..... + ...+++.. +..+++..++.+|+.+.. ....+....+.+.+.
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l~-----~-~qL~vNpr---g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~ 354 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKEG-----M-PAVFVDVR---GTEDTLRSVVKALGVPNV--EACGDLLDFISEACRR 354 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCC-----c-eEEEECCC---CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHH
Confidence 46899999999999999999997653 1 14444444 579999999999997322 222233333333332
Q ss_pred ---c-CCcEEEEEecC--CCccc-ccccccCCCCCCCCcEEEEEeCchhhhhh----cccceeecccCCHHHHHHHhHhh
Q 007339 84 ---A-KEKFVLILDDM--WEAFP-LQEIGIPEPSEENGCKLVITTRLYRVCRS----MKCKQVAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 84 ---~-~~~~LlVlDdv--~~~~~-~~~l~~~~~~~~~~~~IliTtR~~~~~~~----~~~~~~~l~~L~~~ea~~L~~~~ 152 (607)
. +++.+||+-=- ++..- ..+. ..+.-...-|+|++----+.+... ..-.-|-++.|+.++|.+...+.
T Consensus 355 ~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 355 AKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred HHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 3 77788877522 12111 1111 011111224566654443332211 11111788999999998877665
Q ss_pred h
Q 007339 153 V 153 (607)
Q Consensus 153 ~ 153 (607)
.
T Consensus 434 ~ 434 (550)
T PTZ00202 434 I 434 (550)
T ss_pred c
Confidence 4
No 194
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.39 E-value=0.00068 Score=75.29 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=70.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCC---CCe-EEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNK---FND-VIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~---f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
.-+.++|++|+|||++|+.++.+....... .+. ++.++++. +..... ........+..+.+.
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~----------l~a~~~----~~g~~e~~l~~i~~~ 269 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS----------LLAGTK----YRGDFEERLKAVVSE 269 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH----------Hhhhcc----ccchHHHHHHHHHHH
Confidence 456899999999999999999987432110 122 33333211 110000 001122234445555
Q ss_pred HhcCCcEEEEEecCCCccc----------ccc-cccCCCCCCCCcEEEEEeCchhh--------hhhcccceeecccCCH
Q 007339 82 LKAKEKFVLILDDMWEAFP----------LQE-IGIPEPSEENGCKLVITTRLYRV--------CRSMKCKQVAVELLSK 142 (607)
Q Consensus 82 ~~~~~~~LlVlDdv~~~~~----------~~~-l~~~~~~~~~~~~IliTtR~~~~--------~~~~~~~~~~l~~L~~ 142 (607)
....++.+|++|+++.... ... +.+.+. .+ .-++|-+|..... +-.-....++++..+.
T Consensus 270 ~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-~g-~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~ 347 (731)
T TIGR02639 270 IEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-SG-KLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSI 347 (731)
T ss_pred HhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-CC-CeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCH
Confidence 4445689999999975521 111 222222 12 2345544443221 1111233489999999
Q ss_pred HHHHHHhHhhh
Q 007339 143 QEAFNLFIDGV 153 (607)
Q Consensus 143 ~ea~~L~~~~~ 153 (607)
++..+++....
T Consensus 348 ~~~~~il~~~~ 358 (731)
T TIGR02639 348 EETVKILKGLK 358 (731)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
No 195
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.36 E-value=0.00092 Score=60.96 Aligned_cols=88 Identities=18% Similarity=0.201 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCCCCCc---ccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSLPENE---DKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~ 80 (607)
+++|.++|+.|+||||.+.+++.+++.+ -..+..++..... ...+-++..++.++.+..... +..+...+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4789999999999999999999998744 3348888877543 345666778888887643221 22223333333
Q ss_pred HHhcCCcEEEEEecC
Q 007339 81 MLKAKEKFVLILDDM 95 (607)
Q Consensus 81 ~~~~~~~~LlVlDdv 95 (607)
....++.=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 333333457777865
No 196
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=0.00015 Score=78.73 Aligned_cols=131 Identities=23% Similarity=0.279 Sum_probs=76.4
Q ss_pred CCceEEEccCCCCc-cC-Cccc-cCCccCcEeecccccCCCC-CC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCee
Q 007339 355 NGLKVLNLSHTDIE-VL-PSSI-SDLTNLRSLLLRWCGRLKR-VP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHL 429 (607)
Q Consensus 355 ~~L~~L~l~~~~~~-~l-~~~~-~~l~~L~~L~l~~~~~~~~-~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 429 (607)
.+|+.|++++...- .- |..+ .-+|+|+.|.+.+-.+... .. -..++++|..||+|+++++.+ .+++.+++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46777888775421 11 1112 3367777777776444322 22 455777888888888877766 677778888887
Q ss_pred eccCCcCCcCCC-ccccCCCCCCEEEcccCcchhhh-hH----HHhhcccccccEEEeeecCcc
Q 007339 430 YLSSLQLKKFPT-GILPRLRNLYKLKLSFGNEALRE-TV----EEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 430 ~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~----~~l~~l~~~L~~L~l~~~~~~ 487 (607)
.+.+-.+..... ..+-+|++|++||+|........ .+ +.-..|| +|+.||++...+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchh
Confidence 776654443211 11347788888888864322222 11 1222366 7777777755543
No 197
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.32 E-value=0.0044 Score=62.01 Aligned_cols=185 Identities=12% Similarity=0.125 Sum_probs=111.8
Q ss_pred CCceEEEEEcCCCChHHHHH-HHHHhhcccCCCCCCeEEEEEeCCC---CCHHHHHHHHHHHHcc---------------
Q 007339 3 DKVSKIGVWGMGGIGKTTIM-SHINNKLQEKPNKFNDVIWVTVSQP---LDLFKLQTEIATALKQ--------------- 63 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa-~~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~--------------- 63 (607)
..-.+|.|.||-|.||+.|+ .++..+.+ .+..|+|.+. .+-..+...++.++|-
T Consensus 15 ~~~TFIvV~GPrGSGK~elV~d~~L~~r~-------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw~nSiss~ID 87 (431)
T PF10443_consen 15 NPNTFIVVQGPRGSGKRELVMDHVLKDRK-------NVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSWMNSISSFID 87 (431)
T ss_pred CCCeEEEEECCCCCCccHHHHHHHHhCCC-------CEEEEEChHhhhccChHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 44568999999999999999 77766643 2888887542 2334444555544421
Q ss_pred --------CCCC-CcccccchHHHHHHH--------h---------------------cCCcEEEEEecCCCccccc---
Q 007339 64 --------SLPE-NEDKVRRPGRLLGML--------K---------------------AKEKFVLILDDMWEAFPLQ--- 102 (607)
Q Consensus 64 --------~~~~-~~~~~~~~~~l~~~~--------~---------------------~~~~~LlVlDdv~~~~~~~--- 102 (607)
.... ......++..+++.- + ..++-++||||+.+...-.
T Consensus 88 La~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~~k~~~~~~i 167 (431)
T PF10443_consen 88 LAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFLHKAEENDFI 167 (431)
T ss_pred HHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchhccCcccchH
Confidence 0000 011111111111100 0 1236799999986553211
Q ss_pred -----ccccCCCCCCCCcEEEEEeCchhhhh----hcccce---eecccCCHHHHHHHhHhhhCCCCCC-----------
Q 007339 103 -----EIGIPEPSEENGCKLVITTRLYRVCR----SMKCKQ---VAVELLSKQEAFNLFIDGVGSSILQ----------- 159 (607)
Q Consensus 103 -----~l~~~~~~~~~~~~IliTtR~~~~~~----~~~~~~---~~l~~L~~~ea~~L~~~~~~~~~~~----------- 159 (607)
++...+. ..+-.+||++|-+..... ...... +.|...+.+.|+++...+.......
T Consensus 168 y~~laeWAa~Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~ 246 (431)
T PF10443_consen 168 YDKLAEWAASLV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQN 246 (431)
T ss_pred HHHHHHHHHHHH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccccccccccccccccc
Confidence 1222222 234567888887654433 222222 8999999999999999988654110
Q ss_pred --C----ccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccH
Q 007339 160 --V----PILNKEIINEVVEECGCLPLAIVTVAASMSGEEEI 195 (607)
Q Consensus 160 --~----~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~ 195 (607)
. .....+..+..++.+||--.-++.+++.++...++
T Consensus 247 ~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 247 KNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 0 01356677889999999999999999999876554
No 198
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0018 Score=68.29 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=52.4
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCCc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKEK 87 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (607)
|.++|++|.|||-+|++++-+.. ..|+++..+ +++..--+ ...+.++++.++.++.++
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP--------ELLNMYVG------qSE~NVR~VFerAR~A~P 765 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP--------ELLNMYVG------QSEENVREVFERARSAAP 765 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhce--------eeEEeecCH--------HHHHHHhc------chHHHHHHHHHHhhccCC
Confidence 78899999999999999999975 778888775 22222111 122346677777778899
Q ss_pred EEEEEecCCCc
Q 007339 88 FVLILDDMWEA 98 (607)
Q Consensus 88 ~LlVlDdv~~~ 98 (607)
++|+||.+|..
T Consensus 766 CVIFFDELDSl 776 (953)
T KOG0736|consen 766 CVIFFDELDSL 776 (953)
T ss_pred eEEEecccccc
Confidence 99999999876
No 199
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.28 E-value=0.00074 Score=70.74 Aligned_cols=74 Identities=19% Similarity=0.264 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
-+++.++|++|.||||||..+++.. .|. ++-|+++...+...+-..|...+........ .
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa-----GYs-VvEINASDeRt~~~v~~kI~~avq~~s~l~a--------------d 385 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA-----GYS-VVEINASDERTAPMVKEKIENAVQNHSVLDA--------------D 385 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc-----Cce-EEEecccccccHHHHHHHHHHHHhhcccccc--------------C
Confidence 4688999999999999999999884 353 8999999999999999988888765422110 3
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
+++.=||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 56778888988754
No 200
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.27 E-value=0.0002 Score=60.01 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|+|.|++|+||||+|+++++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999999873
No 201
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.002 Score=66.23 Aligned_cols=72 Identities=19% Similarity=0.372 Sum_probs=48.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.|=|.++||+|+|||.||++++....+. ++.++.+ +|+....+ .....+.++.+...+
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vP--------f~~isAp--------eivSGvSG------ESEkkiRelF~~A~~ 280 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGVP--------FLSISAP--------EIVSGVSG------ESEKKIRELFDQAKS 280 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCCc--------eEeecch--------hhhcccCc------ccHHHHHHHHHHHhc
Confidence 3458899999999999999999998632 3333332 22222221 222345666666667
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
..+++++||+++-.
T Consensus 281 ~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 281 NAPCIVFIDEIDAI 294 (802)
T ss_pred cCCeEEEeeccccc
Confidence 88999999999754
No 202
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.012 Score=58.79 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=86.7
Q ss_pred EEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCCcE
Q 007339 9 GVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKEKF 88 (607)
Q Consensus 9 ~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 88 (607)
.++||+|.|||++..++|+.+. |+ |+=+......+-.+ ++.++.. ...+-
T Consensus 239 LLYGPPGTGKSS~IaAmAn~L~-----yd-IydLeLt~v~~n~d-Lr~LL~~-----------------------t~~kS 288 (457)
T KOG0743|consen 239 LLYGPPGTGKSSFIAAMANYLN-----YD-IYDLELTEVKLDSD-LRHLLLA-----------------------TPNKS 288 (457)
T ss_pred eeeCCCCCCHHHHHHHHHhhcC-----Cc-eEEeeeccccCcHH-HHHHHHh-----------------------CCCCc
Confidence 5899999999999999999975 54 44444433222111 2222111 34567
Q ss_pred EEEEecCCCcccc--------------------cccccCCC--CCCC--CcEEEEEeCchhhhhh----c-ccce-eecc
Q 007339 89 VLILDDMWEAFPL--------------------QEIGIPEP--SEEN--GCKLVITTRLYRVCRS----M-KCKQ-VAVE 138 (607)
Q Consensus 89 LlVlDdv~~~~~~--------------------~~l~~~~~--~~~~--~~~IliTtR~~~~~~~----~-~~~~-~~l~ 138 (607)
+||+.|+|.-.+. ..++..+. |.++ .-.||+||....-... . +... +.+.
T Consensus 289 IivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 289 ILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMG 368 (457)
T ss_pred EEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcC
Confidence 7777777643110 01111111 2222 2235567764332221 1 2222 7788
Q ss_pred cCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCc-cHH-HHHHHHHHHHh
Q 007339 139 LLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEE-EIY-EWQNALNELRG 207 (607)
Q Consensus 139 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~-~~~-~~~~~l~~l~~ 207 (607)
-=+.+..+.|+..+++... .+..+.+|.+...+.-+.=..++..+-... +++ ..+.+.+.++.
T Consensus 369 yCtf~~fK~La~nYL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 369 YCTFEAFKTLASNYLGIEE------DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGLVEALES 433 (457)
T ss_pred CCCHHHHHHHHHHhcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 8889999999999998753 134455555555555444455665543333 433 33444444433
No 203
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.25 E-value=0.00061 Score=63.36 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=29.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEe
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTV 44 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 44 (607)
.++|.|..|+|||+++..+..... +.|+.++++.-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~---~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR---HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc---ccCCEEEEEec
Confidence 578999999999999999998875 66877777754
No 204
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0039 Score=61.72 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=69.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC-----------C---Ccc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP-----------E---NED 70 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------~---~~~ 70 (607)
...+.++|+.|+|||++|+.++...--....-+. .+..-...++.+...-..+.. . ..-
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~-------~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I 93 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGH-------KPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQI 93 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC-------CCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCc
Confidence 3468899999999999999998886321000000 000111111111111100000 0 001
Q ss_pred cccchHHHHHHHh----cCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCch-hhhhhcc--cceeecccCC
Q 007339 71 KVRRPGRLLGMLK----AKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLY-RVCRSMK--CKQVAVELLS 141 (607)
Q Consensus 71 ~~~~~~~l~~~~~----~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~-~~~~~~~--~~~~~l~~L~ 141 (607)
..+.++.+.+... .+++.++|+|+++.+.. ...+...+.....+..+|++|.+. .+..... +..+.+.+++
T Consensus 94 ~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~ 173 (325)
T PRK08699 94 KIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPS 173 (325)
T ss_pred CHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCC
Confidence 1222333333332 24566777899887732 222222222112345466666544 3443332 3338999999
Q ss_pred HHHHHHHhHhh
Q 007339 142 KQEAFNLFIDG 152 (607)
Q Consensus 142 ~~ea~~L~~~~ 152 (607)
.+++.+.+.+.
T Consensus 174 ~~~~~~~L~~~ 184 (325)
T PRK08699 174 HEEALAYLRER 184 (325)
T ss_pred HHHHHHHHHhc
Confidence 99999888654
No 205
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.23 E-value=0.0016 Score=73.13 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=83.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC---CCCe-EEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN---KFND-VIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~---~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (607)
..-+.++|++|+|||++|+.++.+...... -.+. ++.++++.-.. .. ....+....+..+++
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-------------g~-~~~ge~e~~lk~ii~ 273 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA-------------GA-SVKGEFENRLKSVID 273 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-------------cc-ccchHHHHHHHHHHH
Confidence 345679999999999999999998742100 0112 33344332100 00 000111122333333
Q ss_pred HHh-cCCcEEEEEecCCCccc-------cc---ccccCCCCCCCCcEEEEEeCchhhh--------hhcccceeecccCC
Q 007339 81 MLK-AKEKFVLILDDMWEAFP-------LQ---EIGIPEPSEENGCKLVITTRLYRVC--------RSMKCKQVAVELLS 141 (607)
Q Consensus 81 ~~~-~~~~~LlVlDdv~~~~~-------~~---~l~~~~~~~~~~~~IliTtR~~~~~--------~~~~~~~~~l~~L~ 141 (607)
... .+.+++|++|++..... -+ -+.+.+. . ...++|-+|...... -.-....+.+++++
T Consensus 274 e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~-G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps 351 (852)
T TIGR03345 274 EVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-R-GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPD 351 (852)
T ss_pred HHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-C-CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCC
Confidence 332 35689999999876531 11 1222222 2 234566666643221 11133349999999
Q ss_pred HHHHHHHhHhhh---CCCCCCCccchHHHHHHHHHHcCCch
Q 007339 142 KQEAFNLFIDGV---GSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 142 ~~ea~~L~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
.+++.+++.... ..... -...++....+++.+.++.
T Consensus 352 ~~~~~~iL~~~~~~~e~~~~--v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 352 EETAIRMLRGLAPVLEKHHG--VLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHHHHHHHHHHHhhhhcCC--CeeCHHHHHHHHHHccccc
Confidence 999999964333 22211 1125677788888776543
No 206
>PRK06526 transposase; Provisional
Probab=97.23 E-value=0.00033 Score=66.62 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=43.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-+.|+|++|+|||.||..++.....+ .+. +.|+ +..++...+..... . .........+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~--g~~-v~f~------t~~~l~~~l~~~~~----~-----~~~~~~l~~l-- 157 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA--GHR-VLFA------TAAQWVARLAAAHH----A-----GRLQAELVKL-- 157 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC--CCc-hhhh------hHHHHHHHHHHHHh----c-----CcHHHHHHHh--
Confidence 4568999999999999999998876532 222 3443 23344444433211 1 1111222333
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
.+.-+|||||+...
T Consensus 158 ~~~dlLIIDD~g~~ 171 (254)
T PRK06526 158 GRYPLLIVDEVGYI 171 (254)
T ss_pred ccCCEEEEcccccC
Confidence 23468999999754
No 207
>PRK04296 thymidine kinase; Provisional
Probab=97.18 E-value=0.00028 Score=64.28 Aligned_cols=111 Identities=10% Similarity=0.050 Sum_probs=61.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH--h
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML--K 83 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~--~ 83 (607)
.++.|+|+.|.||||+|..++.+.... . ..++.+.- ..+.......++..++.+.... .......+.+.+ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g-~~v~i~k~--~~d~~~~~~~i~~~lg~~~~~~--~~~~~~~~~~~~~~~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--G-MKVLVFKP--AIDDRYGEGKVVSRIGLSREAI--PVSSDTDIFELIEEE 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--C-CeEEEEec--cccccccCCcEecCCCCcccce--EeCChHHHHHHHHhh
Confidence 578899999999999999999998532 2 23444421 1111122334455555332220 011122222222 2
Q ss_pred cCCcEEEEEecCCCc--ccccccccCCCCCCCCcEEEEEeCchh
Q 007339 84 AKEKFVLILDDMWEA--FPLQEIGIPEPSEENGCKLVITTRLYR 125 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IliTtR~~~ 125 (607)
.++.-++|+|.++-. +++.++...+. ..+..|++|.++..
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 345568999999654 22333333322 45778999999643
No 208
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.18 E-value=0.0013 Score=62.60 Aligned_cols=92 Identities=17% Similarity=0.194 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC-----------C-c
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKP---NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE-----------N-E 69 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----------~-~ 69 (607)
..++.|+|++|+|||++|.+++....... .....++|++....++...+.+ +++..+..... . .
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCHH
Confidence 46789999999999999999986643221 1135699999888766544433 33433321110 0 0
Q ss_pred ccccchHHHHHHHhcC-CcEEEEEecCCC
Q 007339 70 DKVRRPGRLLGMLKAK-EKFVLILDDMWE 97 (607)
Q Consensus 70 ~~~~~~~~l~~~~~~~-~~~LlVlDdv~~ 97 (607)
+.......+.+.+.+. +.-++|+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1111223333334344 778888888854
No 209
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0015 Score=67.53 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=97.6
Q ss_pred EEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC----CCcccccchHHHHHHHh-
Q 007339 9 GVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP----ENEDKVRRPGRLLGMLK- 83 (607)
Q Consensus 9 ~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~~~- 83 (607)
...|+-|+||||+|+-++.-.--. .. ....+..-...++.|...-..+.. ......+.++.+.+...
T Consensus 42 lfsG~RGvGKTt~Ari~AkalNC~----~~----~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y 113 (515)
T COG2812 42 LFSGPRGVGKTTIARILAKALNCE----NG----PTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNY 113 (515)
T ss_pred hhcCCCCcCchhHHHHHHHHhcCC----CC----CCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhcc
Confidence 468999999999999998886321 11 112233333444444444111111 11122234444444443
Q ss_pred ---cCCcEEEEEecCCCc--ccccccccCCCCCCCCc-EEEEEeCchhhhhhc--ccceeecccCCHHHHHHHhHhhhCC
Q 007339 84 ---AKEKFVLILDDMWEA--FPLQEIGIPEPSEENGC-KLVITTRLYRVCRSM--KCKQVAVELLSKQEAFNLFIDGVGS 155 (607)
Q Consensus 84 ---~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~-~IliTtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~ 155 (607)
.++--++|+|.|.-+ ..+..+...+-.-.... .|+.||-...+.... ++..+.++.++.++-...+...+..
T Consensus 114 ~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~ 193 (515)
T COG2812 114 APSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK 193 (515)
T ss_pred CCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHh
Confidence 467889999999755 34555544433212233 355666655554332 3333999999999999999999988
Q ss_pred CCCCCccchHHHHHHHHHHcCCch
Q 007339 156 SILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 156 ~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
..... +++....|++..+|..
T Consensus 194 E~I~~---e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 194 EGINI---EEDALSLIARAAEGSL 214 (515)
T ss_pred cCCcc---CHHHHHHHHHHcCCCh
Confidence 76666 7888888999888854
No 210
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.15 E-value=0.0015 Score=72.74 Aligned_cols=148 Identities=14% Similarity=0.168 Sum_probs=82.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+-|.++|++|+|||++|+.++.... ..| +.+..+ ++.... . ......+..+.+.....
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~---~~f---i~v~~~----------~l~~~~----v--Gese~~i~~~f~~A~~~ 545 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESG---ANF---IAVRGP----------EILSKW----V--GESEKAIREIFRKARQA 545 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcC---CCE---EEEehH----------HHhhcc----c--CcHHHHHHHHHHHHHhc
Confidence 4588999999999999999999864 222 222221 111111 0 01112344555555567
Q ss_pred CcEEEEEecCCCccc--------------ccccccCCCC--CCCCcEEEEEeCchhhhhh--c---ccce-eecccCCHH
Q 007339 86 EKFVLILDDMWEAFP--------------LQEIGIPEPS--EENGCKLVITTRLYRVCRS--M---KCKQ-VAVELLSKQ 143 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~--------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~--~---~~~~-~~l~~L~~~ 143 (607)
.+.+|+||+++.... +..+...+.. ...+..||.||........ . +... +.++..+.+
T Consensus 546 ~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~ 625 (733)
T TIGR01243 546 APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEE 625 (733)
T ss_pred CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHH
Confidence 789999999975411 1112222221 1234446666654433321 1 2233 778888888
Q ss_pred HHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 144 EAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 144 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+-.++|..+....... .......+++.+.|+-
T Consensus 626 ~R~~i~~~~~~~~~~~----~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 626 ARKEIFKIHTRSMPLA----EDVDLEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHhcCCCCC----ccCCHHHHHHHcCCCC
Confidence 8888887666443222 1223567788887764
No 211
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.14 E-value=0.0017 Score=61.25 Aligned_cols=49 Identities=16% Similarity=0.178 Sum_probs=35.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCC---CCCCeEEEEEeCCCCCHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKP---NKFNDVIWVTVSQPLDLFKL 53 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~ 53 (607)
..++.|+|++|+|||++|.+++....... ..-..++|++....++...+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl 70 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERL 70 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHH
Confidence 46899999999999999999988754221 01145899998876665444
No 212
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.13 E-value=0.0002 Score=64.35 Aligned_cols=74 Identities=32% Similarity=0.390 Sum_probs=44.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
..-+.|+|++|+|||.||..+++..-.+ .+ .+.|+++ .+++ ..+...... ....+..+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~-~v~f~~~------~~L~----~~l~~~~~~-----~~~~~~~~~l~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRK--GY-SVLFITA------SDLL----DELKQSRSD-----GSYEELLKRLK- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHT--T---EEEEEH------HHHH----HHHHCCHCC-----TTHCHHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccC--Cc-ceeEeec------Ccee----ccccccccc-----cchhhhcCccc-
Confidence 3568999999999999999999887532 22 3677753 3333 334332111 11233444442
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
+-=||||||+-..
T Consensus 108 -~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 -RVDLLILDDLGYE 120 (178)
T ss_dssp -TSSCEEEETCTSS
T ss_pred -cccEeccccccee
Confidence 3468889998644
No 213
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.13 E-value=0.00023 Score=65.46 Aligned_cols=235 Identities=15% Similarity=0.048 Sum_probs=104.8
Q ss_pred CCCCceEEEccCCCCc-----cCCccccCCccCcEeecccccC--C-CC--------CCcccCCCCCCEEeccCCchh-h
Q 007339 353 HMNGLKVLNLSHTDIE-----VLPSSISDLTNLRSLLLRWCGR--L-KR--------VPSLAKLLALQYLDLEGTWIE-E 415 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~--~-~~--------~~~~~~l~~L~~L~l~~~~l~-~ 415 (607)
-+..++.++||+|.|. .+-..+.+-.+|+..+++.-.. . .. .+.+-+|++|+..+||.|-+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3566666777777654 1222344455555555553210 0 01 112445566666666666433 2
Q ss_pred hH----HhccCCCCCCeeeccCCcCCcCCCcc-------------ccCCCCCCEEEcccCcchhhhhH---HHhhccccc
Q 007339 416 VL----ECMEMLENLSHLYLSSLQLKKFPTGI-------------LPRLRNLYKLKLSFGNEALRETV---EEAASLSDG 475 (607)
Q Consensus 416 l~----~~~~~l~~L~~L~l~~~~l~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~~ 475 (607)
.| .-+.+-+.|.+|.+++|.+..+.-+- ..+-+.|++.....|........ ..+..-. +
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~-~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE-N 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc-C
Confidence 22 23445556666666666543322111 13445555555555433222111 2222333 5
Q ss_pred ccEEEeeecCccc--ccc--ccccccCCcceeEEEEeecch-hhhhhcccccccccccceeeeeeeccCCCCCc------
Q 007339 476 LDYFEGCFSKLKD--FNR--YVKSTDGRGSKNYCLVLSESW-MYYMFIRDLITDLEVDKSVRLFACKICEREEP------ 544 (607)
Q Consensus 476 L~~L~l~~~~~~~--~~~--~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~------ 544 (607)
|+++.+..|.+.. +.. +....-+..|+.|++.-+.-. .........++.-+.|+.|.+.+|-++..+.-
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 5566665555432 111 111111222444444321100 00111122233335678888888876644331
Q ss_pred -ccCCcccceeeeeeecCccccc---CccccccccccccccccccceEEEeccc
Q 007339 545 -IVLPEDVQYLEMIRVDDVASLN---DVLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 545 -~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
-...|+|..|...+|..-..+- .++.+++ +.+|-|..|.+.+++
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~------~~~p~L~~le~ngNr 314 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRGGIILDISLNEFEQ------DAVPLLVDLERNGNR 314 (388)
T ss_pred hhhcCCCccccccchhhhcCceeeeechhhhhh------cccHHHHHHHHccCc
Confidence 2345677777777765222211 0122211 456777776666543
No 214
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.12 E-value=0.0018 Score=57.35 Aligned_cols=40 Identities=28% Similarity=0.452 Sum_probs=31.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 49 (607)
++.|+|++|+|||+++..++..... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 4789999999999999999998753 234588888876543
No 215
>PRK09183 transposase/IS protein; Provisional
Probab=97.12 E-value=0.00095 Score=63.94 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+.|+|++|+|||+||..++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999987753
No 216
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00098 Score=63.07 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCC--CC-CCeEEEEEeC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKP--NK-FNDVIWVTVS 45 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~--~~-f~~~~wv~~~ 45 (607)
-|+|.++||+|.|||+|++++|.....+. .+ +...+-++..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 47899999999999999999999987762 22 2235555543
No 217
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.08 E-value=0.0017 Score=63.79 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=56.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCC---------ccc--
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEK---PNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPEN---------EDK-- 71 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---------~~~-- 71 (607)
.++-|+|++|+|||+||.+++-..... +..-..++||+....++...+.+ +++.++.+...- ...
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~e~ 175 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTSEH 175 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCHHH
Confidence 577899999999999999988654321 11123599999999888877764 566665432110 001
Q ss_pred -ccchHHHHHHHhcCCcEEEEEecCCC
Q 007339 72 -VRRPGRLLGMLKAKEKFVLILDDMWE 97 (607)
Q Consensus 72 -~~~~~~l~~~~~~~~~~LlVlDdv~~ 97 (607)
.+.+..+...+..++--|+|+|.+..
T Consensus 176 ~~~~l~~l~~~i~~~~~~LvVIDSisa 202 (313)
T TIGR02238 176 QMELLDYLAAKFSEEPFRLLIVDSIMA 202 (313)
T ss_pred HHHHHHHHHHHhhccCCCEEEEEcchH
Confidence 11222333333345666888888754
No 218
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0055 Score=64.60 Aligned_cols=136 Identities=15% Similarity=0.178 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..++++++||+|||||.|++.++.-... .| +-++++...+-.+ +++. +..-....-.++.+.+.
T Consensus 349 kGpILcLVGPPGVGKTSLgkSIA~al~R---kf---vR~sLGGvrDEAE--------IRGH--RRTYIGamPGrIiQ~mk 412 (782)
T COG0466 349 KGPILCLVGPPGVGKTSLGKSIAKALGR---KF---VRISLGGVRDEAE--------IRGH--RRTYIGAMPGKIIQGMK 412 (782)
T ss_pred CCcEEEEECCCCCCchhHHHHHHHHhCC---CE---EEEecCccccHHH--------hccc--cccccccCChHHHHHHH
Confidence 3479999999999999999999999863 33 3334444433222 2221 11111222333444443
Q ss_pred --cCCcEEEEEecCCCccc------ccccccCCCC---C----------CCCcE-EEEEeCc-hh-hh-hhcc-cceeec
Q 007339 84 --AKEKFVLILDDMWEAFP------LQEIGIPEPS---E----------ENGCK-LVITTRL-YR-VC-RSMK-CKQVAV 137 (607)
Q Consensus 84 --~~~~~LlVlDdv~~~~~------~~~l~~~~~~---~----------~~~~~-IliTtR~-~~-~~-~~~~-~~~~~l 137 (607)
+.++-+++||.+|.+.. ...++..+.. . -.=|. +.|||-+ -. +. .... ...+++
T Consensus 413 ka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~l 492 (782)
T COG0466 413 KAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRL 492 (782)
T ss_pred HhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeee
Confidence 46788999999986621 1111111110 0 01123 3344442 21 11 1111 222899
Q ss_pred ccCCHHHHHHHhHhhhCC
Q 007339 138 ELLSKQEAFNLFIDGVGS 155 (607)
Q Consensus 138 ~~L~~~ea~~L~~~~~~~ 155 (607)
.+.+++|-.++-+++.-+
T Consensus 493 sgYt~~EKl~IAk~~LiP 510 (782)
T COG0466 493 SGYTEDEKLEIAKRHLIP 510 (782)
T ss_pred cCCChHHHHHHHHHhcch
Confidence 999999998888777633
No 219
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.06 E-value=0.0018 Score=61.05 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFK 52 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 52 (607)
..++.|+|++|+|||++|.+++..... .-..++|++.. ..+...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~---~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK---NGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEECC-CCCHHH
Confidence 468999999999999999999988752 23568999988 444433
No 220
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0057 Score=63.78 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+=|.++||+|+|||++|+.+++.-+ .+| +.+..+ ++.....+ +....+.++.+..+
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~---~nF-----lsvkgp--------EL~sk~vG------eSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAG---MNF-----LSVKGP--------ELFSKYVG------ESERAIREVFRKAR 524 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhc---CCe-----eeccCH--------HHHHHhcC------chHHHHHHHHHHHh
Confidence 356688999999999999999999975 233 333332 12222111 11224455555555
Q ss_pred cCCcEEEEEecCCCccc-------------ccccccCCCCCCCCcEEEE---EeCchhhhh-hcc---cce-eecccCCH
Q 007339 84 AKEKFVLILDDMWEAFP-------------LQEIGIPEPSEENGCKLVI---TTRLYRVCR-SMK---CKQ-VAVELLSK 142 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~Ili---TtR~~~~~~-~~~---~~~-~~l~~L~~ 142 (607)
+-.+++++||.+|.... +..+............|+| |.|...+-. .++ ... +.++.=+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 56678999998875522 1111222221112222332 333222221 121 222 44544455
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.-.++|+.++.+....+ .-..++|++.+.|+.
T Consensus 605 ~aR~~Ilk~~~kkmp~~~----~vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPFSE----DVDLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHHHhcCCCCc----cccHHHHHHHhccCC
Confidence 566777888876654333 234667777777765
No 221
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=2.9e-05 Score=71.51 Aligned_cols=101 Identities=21% Similarity=0.206 Sum_probs=63.8
Q ss_pred CccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCCC-ccccCCCCCCEEEc
Q 007339 377 LTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPT-GILPRLRNLYKLKL 455 (607)
Q Consensus 377 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l 455 (607)
+.+.+.|+..+|.+. ++.-..+++.|++|.||-|+|+.+.+ +..|++|++|+|..|.|..+.. ..+.++++|++|.|
T Consensus 18 l~~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCcc-HHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 445566666666533 33345567777777777777776633 5667777888877777665543 23567777888887
Q ss_pred ccCcchhhhhH----HHhhcccccccEEE
Q 007339 456 SFGNEALRETV----EEAASLSDGLDYFE 480 (607)
Q Consensus 456 ~~~~~~~~~~~----~~l~~l~~~L~~L~ 480 (607)
..|.+...... ..+.-|| +|+.|+
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LP-nLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLP-NLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcc-cchhcc
Confidence 77755443332 3455566 666665
No 222
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.00 E-value=0.0036 Score=57.45 Aligned_cols=149 Identities=13% Similarity=0.170 Sum_probs=86.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|..+|++|.|||-+|+++++..++. .+-|.+.+ -|-+.. .+....+.++.++..+
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp------~l~vkat~---------liGehV-------Gdgar~Ihely~rA~~ 208 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVP------LLLVKATE---------LIGEHV-------GDGARRIHELYERARK 208 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCc------eEEechHH---------HHHHHh-------hhHHHHHHHHHHHHHh
Confidence 5678999999999999999999997633 22222111 111111 2233455666666666
Q ss_pred CCcEEEEEecCCCcc--------------cccccccCCC--CCCCCcEEEEEeCchhhhhh---cccce-eecccCCHHH
Q 007339 85 KEKFVLILDDMWEAF--------------PLQEIGIPEP--SEENGCKLVITTRLYRVCRS---MKCKQ-VAVELLSKQE 144 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~--------------~~~~l~~~~~--~~~~~~~IliTtR~~~~~~~---~~~~~-~~l~~L~~~e 144 (607)
.-++++++|.++-.. .+..+...+. ..+.|...|-.|....+... .+... ++..-=.++|
T Consensus 209 ~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eE 288 (368)
T COG1223 209 AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEE 288 (368)
T ss_pred cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHH
Confidence 789999999986431 1222222222 12345444444554444332 12222 5555556888
Q ss_pred HHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 145 AFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 145 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
-..++...+..-+.+ .+...+.++++.+|+.
T Consensus 289 r~~ile~y~k~~Plp----v~~~~~~~~~~t~g~S 319 (368)
T COG1223 289 RLEILEYYAKKFPLP----VDADLRYLAAKTKGMS 319 (368)
T ss_pred HHHHHHHHHHhCCCc----cccCHHHHHHHhCCCC
Confidence 888888887655333 2334667777777764
No 223
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.0036 Score=62.77 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=71.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC------------------CCCeEEEEEeCCCCC---HHHHHHHHHHHHccC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN------------------KFNDVIWVTVSQPLD---LFKLQTEIATALKQS 64 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~------------------~f~~~~wv~~~~~~~---~~~~~~~i~~~l~~~ 64 (607)
+.+.++|++|+||||+|..++..+-.... ....+..++.+.... ..+..+.+.+.....
T Consensus 25 halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~ 104 (325)
T COG0470 25 HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSES 104 (325)
T ss_pred ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccC
Confidence 35899999999999999999998753210 224466666655444 233344444433322
Q ss_pred CCCCcccccchHHHHHHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeC-chhhhhhcccce--eeccc
Q 007339 65 LPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTR-LYRVCRSMKCKQ--VAVEL 139 (607)
Q Consensus 65 ~~~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR-~~~~~~~~~~~~--~~l~~ 139 (607)
.. .++..++|+|+++.+.. ...++...-.-...+.+|++|. ...+........ +++.+
T Consensus 105 ~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 105 PL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceeeecCC
Confidence 11 36789999999998843 3333333333345666777666 333333332222 66666
Q ss_pred CCHHHHHH
Q 007339 140 LSKQEAFN 147 (607)
Q Consensus 140 L~~~ea~~ 147 (607)
.+..+...
T Consensus 168 ~~~~~~i~ 175 (325)
T COG0470 168 PSRLEAIA 175 (325)
T ss_pred chHHHHHH
Confidence 44444333
No 224
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00053 Score=74.58 Aligned_cols=127 Identities=19% Similarity=0.079 Sum_probs=71.2
Q ss_pred cCCCCceEEEccCCCCc--cCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhH--HhccCCCCCC
Q 007339 352 VHMNGLKVLNLSHTDIE--VLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVL--ECMEMLENLS 427 (607)
Q Consensus 352 ~~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~--~~~~~l~~L~ 427 (607)
..+|.|+.|.+.+-.+. .+..-..++++|..||++++++. .+..++++++|++|.+.+=.+.... ..+.+|++|+
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-CcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 35677777777765543 22233456777777777766543 3346777777777777665554322 3566777777
Q ss_pred eeeccCCcCCcCCC------ccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEE
Q 007339 428 HLYLSSLQLKKFPT------GILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFE 480 (607)
Q Consensus 428 ~L~l~~~~l~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~ 480 (607)
.||+|.......+. +--..|++|+.||.|+........-.-+...+ +|+.+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~-~L~~i~ 281 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHP-NLQQIA 281 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCc-cHhhhh
Confidence 77777654333221 00135777788887765443333222233344 454444
No 225
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.99 E-value=0.003 Score=71.15 Aligned_cols=153 Identities=14% Similarity=0.198 Sum_probs=80.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC---CCCeEEE-EEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN---KFNDVIW-VTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~---~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
+-+.++|++|+|||++|+.++.+...... .-+..+| +++. .+ +...... .+....+..+++.
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~------~l-------~ag~~~~-ge~e~rl~~i~~~ 266 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIG------LL-------LAGTKYR-GEFEERLKRIFDE 266 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHH------HH-------hccCCCc-cHHHHHHHHHHHH
Confidence 34679999999999999999998742111 0122333 3321 11 1111111 1222345555655
Q ss_pred HhcCCcEEEEEecCCCccc---------ccccccCCCCCCCCcEEEEEeCchhhhh--------hcccceeecccCCHHH
Q 007339 82 LKAKEKFVLILDDMWEAFP---------LQEIGIPEPSEENGCKLVITTRLYRVCR--------SMKCKQVAVELLSKQE 144 (607)
Q Consensus 82 ~~~~~~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~IliTtR~~~~~~--------~~~~~~~~l~~L~~~e 144 (607)
....++.+|++|+++.... ...+..+....+ .-++|-+|....... ......+.++..+.++
T Consensus 267 ~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e 345 (821)
T CHL00095 267 IQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEE 345 (821)
T ss_pred HHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHH
Confidence 5556789999999964421 111221111122 245665555444311 1122237888889999
Q ss_pred HHHHhHhhhC---CC-CCCCccchHHHHHHHHHHcC
Q 007339 145 AFNLFIDGVG---SS-ILQVPILNKEIINEVVEECG 176 (607)
Q Consensus 145 a~~L~~~~~~---~~-~~~~~~~~~~~~~~i~~~~~ 176 (607)
...++..... .. ...- .++....+++..+
T Consensus 346 ~~aILr~l~~~~e~~~~v~i---~deal~~i~~ls~ 378 (821)
T CHL00095 346 TIEILFGLRSRYEKHHNLSI---SDKALEAAAKLSD 378 (821)
T ss_pred HHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhh
Confidence 8888764321 11 1112 4566666666664
No 226
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.97 E-value=0.001 Score=65.04 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC-----CCcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP-----ENEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 79 (607)
.+++-|+|++|+||||||.+++...... -..++||+..+.++.. .++.++.+.. ......+....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3688999999999999999998887532 2448899887765542 3444443211 1111122222233
Q ss_pred HHHhcCCcEEEEEecCCCc
Q 007339 80 GMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~ 98 (607)
....++..-++|+|.+...
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 3333567789999998654
No 227
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0079 Score=63.14 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=85.9
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCCc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKEK 87 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (607)
|.++|++|+|||-||.+++.... .-+|++..+ +++.+.-+. ..+.++.+..+.+.-++
T Consensus 704 iLLyGppGcGKT~la~a~a~~~~--------~~fisvKGP--------ElL~KyIGa------SEq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 704 ILLYGPPGCGKTLLASAIASNSN--------LRFISVKGP--------ELLSKYIGA------SEQNVRDLFERAQSAKP 761 (952)
T ss_pred eEEECCCCCcHHHHHHHHHhhCC--------eeEEEecCH--------HHHHHHhcc------cHHHHHHHHHHhhccCC
Confidence 78999999999999999998864 567888776 333333221 12345667777777899
Q ss_pred EEEEEecCCCccc-------------ccccccCCCC--CCCCcEEE-EEeCchhhhh---hc-ccceeecccC-CHHHHH
Q 007339 88 FVLILDDMWEAFP-------------LQEIGIPEPS--EENGCKLV-ITTRLYRVCR---SM-KCKQVAVELL-SKQEAF 146 (607)
Q Consensus 88 ~LlVlDdv~~~~~-------------~~~l~~~~~~--~~~~~~Il-iTtR~~~~~~---~~-~~~~~~l~~L-~~~ea~ 146 (607)
++|+||.++.... +.++...+.. +-.|.-|+ -|||..-+-. +. +....-.-++ ++.|-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 9999999986522 2233222221 11243344 3556332211 11 1112222333 455666
Q ss_pred HHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 147 NLFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
+++.......... ..-..+.++++.+|+.-|
T Consensus 842 ~il~~ls~s~~~~----~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 842 EILQVLSNSLLKD----TDVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHhhccCCc----cccchHHHhhhcCCCchh
Confidence 7666655433222 344567788888888644
No 228
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.96 E-value=0.0011 Score=64.85 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC-----CCcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP-----ENEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 79 (607)
.+++-|+|++|+||||||.+++...... -..++||+....++.. .++.++.+.. ......+....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL---GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 4688899999999999999998887532 2358899987766542 3344433211 1111122222232
Q ss_pred HHHhcCCcEEEEEecCCCc
Q 007339 80 GMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~ 98 (607)
....++.--++|+|.|...
T Consensus 127 ~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHhccCCCEEEEcchHhh
Confidence 3333567789999998644
No 229
>PRK12377 putative replication protein; Provisional
Probab=96.95 E-value=0.0026 Score=60.12 Aligned_cols=74 Identities=24% Similarity=0.317 Sum_probs=47.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
...+.|+|++|+|||.||..+++....+ ...+.++++. ++...+-...... .....+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~------~l~~~l~~~~~~~--------~~~~~~l~~l-- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVP------DVMSRLHESYDNG--------QSGEKFLQEL-- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHH------HHHHHHHHHHhcc--------chHHHHHHHh--
Confidence 3578999999999999999999998632 2236676543 3444443333210 0112334444
Q ss_pred CCcEEEEEecCCC
Q 007339 85 KEKFVLILDDMWE 97 (607)
Q Consensus 85 ~~~~LlVlDdv~~ 97 (607)
.+--||||||+..
T Consensus 162 ~~~dLLiIDDlg~ 174 (248)
T PRK12377 162 CKVDLLVLDEIGI 174 (248)
T ss_pred cCCCEEEEcCCCC
Confidence 4567999999943
No 230
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.023 Score=55.41 Aligned_cols=155 Identities=12% Similarity=0.066 Sum_probs=90.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc-------cCCCCCCeEEEEEe-CCCCCHHHHHHHHHHHHccCCCCCcccccchH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ-------EKPNKFNDVIWVTV-SQPLDLFKLQTEIATALKQSLPENEDKVRRPG 76 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~-------~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 76 (607)
.++..++|..|.||+++|..++...- ..+.+.+.+.+++. +.....+++. ++.+.+.....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~~---------- 86 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSSF---------- 86 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCCc----------
Confidence 45677999999999999999988861 11122323444432 2222333333 23333322110
Q ss_pred HHHHHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEE-EeCchhhhhhc--ccceeecccCCHHHHHHHhHh
Q 007339 77 RLLGMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVI-TTRLYRVCRSM--KCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 77 ~l~~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~Ili-TtR~~~~~~~~--~~~~~~l~~L~~~ea~~L~~~ 151 (607)
..+++-++|+|+++.+.. ...+...+..-...+.+|+ |+....+.... ++..+++.++++++..+.+..
T Consensus 87 ------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 87 ------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred ------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 025788999999987743 3344444443344555555 44544444332 244499999999999988765
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
. +. .++.+..++...+|.-.|+..+
T Consensus 161 ~-~~--------~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 161 K-NK--------EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred c-CC--------ChhHHHHHHHHcCCHHHHHHHH
Confidence 4 21 3355666777777744566554
No 231
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.92 E-value=0.0014 Score=59.17 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=30.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEE
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVT 43 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 43 (607)
....+|.|.|++|+||||+|+.++..+. ..+..+++++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~---~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK---LKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEe
Confidence 4566899999999999999999999985 2344555554
No 232
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.0036 Score=62.57 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=54.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-LDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
...+++++|+.|+||||++.+++..+..+ .....+..+..... ....+-+....+.++.+........+. ......+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l-~~~l~~l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR-FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL-QLALAEL 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH-HHHHHHh
Confidence 35789999999999999999999886422 22345777775543 234445555566666654332222222 2333333
Q ss_pred hcCCcEEEEEecCCC
Q 007339 83 KAKEKFVLILDDMWE 97 (607)
Q Consensus 83 ~~~~~~LlVlDdv~~ 97 (607)
.+ .-++++|..-.
T Consensus 214 -~~-~DlVLIDTaG~ 226 (374)
T PRK14722 214 -RN-KHMVLIDTIGM 226 (374)
T ss_pred -cC-CCEEEEcCCCC
Confidence 33 46667998743
No 233
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.91 E-value=0.0027 Score=69.82 Aligned_cols=134 Identities=15% Similarity=0.163 Sum_probs=70.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCC---CCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNK---FNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~---f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
.-+.++|++|+|||++|+.++......... .+..+|.- ++.. ++ .... ...........+.+.+
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----ll---aG~~-~~Ge~e~rl~~l~~~l 274 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LL---AGTK-YRGDFEKRFKALLKQL 274 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hh---cccc-hhhhHHHHHHHHHHHH
Confidence 345789999999999999999876322111 12333321 1111 11 1110 0112222344455555
Q ss_pred hcCCcEEEEEecCCCccc----------ccccccCCCCCCCCcEEEEEeCchhhhh--------hcccceeecccCCHHH
Q 007339 83 KAKEKFVLILDDMWEAFP----------LQEIGIPEPSEENGCKLVITTRLYRVCR--------SMKCKQVAVELLSKQE 144 (607)
Q Consensus 83 ~~~~~~LlVlDdv~~~~~----------~~~l~~~~~~~~~~~~IliTtR~~~~~~--------~~~~~~~~l~~L~~~e 144 (607)
....+.+|+||+++.... ...+..++...+ .-++|-+|....... .-....+.+++.+.++
T Consensus 275 ~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~ 353 (758)
T PRK11034 275 EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEE 353 (758)
T ss_pred HhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHH
Confidence 455678999999975411 111112222122 334555554333211 1123348999999999
Q ss_pred HHHHhHhhh
Q 007339 145 AFNLFIDGV 153 (607)
Q Consensus 145 a~~L~~~~~ 153 (607)
+.+++....
T Consensus 354 ~~~IL~~~~ 362 (758)
T PRK11034 354 TVQIINGLK 362 (758)
T ss_pred HHHHHHHHH
Confidence 999988653
No 234
>PRK09354 recA recombinase A; Provisional
Probab=96.90 E-value=0.0024 Score=63.07 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC-----CCcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP-----ENEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 79 (607)
.+++-|+|++|+||||||.+++...... -..++||+....++. ..++.++.+.. ......+....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~---G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4688899999999999999998887533 245899998887664 23444443211 1111122222233
Q ss_pred HHHhcCCcEEEEEecCCCc
Q 007339 80 GMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~ 98 (607)
....++.--++|+|.|...
T Consensus 132 ~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHhhcCCCCEEEEeChhhh
Confidence 3333567789999998654
No 235
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.009 Score=56.03 Aligned_cols=149 Identities=13% Similarity=0.224 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
-+-|.++|++|.||+.||++++-... ..|.+++.. .++..... .....+..+.+..+.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn--------STFFSvSSS--------DLvSKWmG------ESEkLVknLFemARe 223 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN--------STFFSVSSS--------DLVSKWMG------ESEKLVKNLFEMARE 223 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC--------CceEEeehH--------HHHHHHhc------cHHHHHHHHHHHHHh
Confidence 35689999999999999999998853 233444442 12222211 112245566666667
Q ss_pred CCcEEEEEecCCCcc---------cccccc----cCC---CCCCCCcEEEEEeCchhhhhh---cccce-eecccCCHHH
Q 007339 85 KEKFVLILDDMWEAF---------PLQEIG----IPE---PSEENGCKLVITTRLYRVCRS---MKCKQ-VAVELLSKQE 144 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~---------~~~~l~----~~~---~~~~~~~~IliTtR~~~~~~~---~~~~~-~~l~~L~~~e 144 (607)
+++-+|++|.++.+- ....+. -.. .....|.-|+=.|..+-+... .+... +.+ +|.+..
T Consensus 224 ~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~ 302 (439)
T KOG0739|consen 224 NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAH 302 (439)
T ss_pred cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHH
Confidence 899999999997541 111111 111 112234334444443333222 11222 222 233333
Q ss_pred -HHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 145 -AFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 145 -a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
-..+|+-++|.-...- .++..+.+.++..|..
T Consensus 303 AR~~MF~lhlG~tp~~L---T~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 303 ARARMFKLHLGDTPHVL---TEQDFKELARKTEGYS 335 (439)
T ss_pred HhhhhheeccCCCcccc---chhhHHHHHhhcCCCC
Confidence 3456777777764444 5667788888887765
No 236
>PRK06921 hypothetical protein; Provisional
Probab=96.88 E-value=0.0041 Score=59.81 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=29.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEe
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTV 44 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 44 (607)
....+.++|++|+|||.||..+++....+ .. ..++|+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~-~g-~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK-KG-VPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh-cC-ceEEEEEH
Confidence 45679999999999999999999987532 12 34677764
No 237
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.0047 Score=58.21 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=47.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
...+.++|.+|+|||.||..+++....+ -..+++++ ..++...+-..... . .....++.+.+ .
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it------~~~l~~~l~~~~~~---~----~~~~~~~l~~l-~ 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIIT------VADIMSAMKDTFSN---S----ETSEEQLLNDL-S 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEE------HHHHHHHHHHHHhh---c----cccHHHHHHHh-c
Confidence 3578999999999999999999998533 23466664 34444444333321 0 11223344544 2
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
+.=+|||||+...
T Consensus 162 -~~dlLvIDDig~~ 174 (244)
T PRK07952 162 -NVDLLVIDEIGVQ 174 (244)
T ss_pred -cCCEEEEeCCCCC
Confidence 3458888999654
No 238
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.88 E-value=0.0093 Score=59.78 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=39.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC----HHHHHHHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD----LFKLQTEIATAL 61 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~----~~~~~~~i~~~l 61 (607)
+..-+|+|.|.=|+|||++.+.+....+.....--.+++++...... ...++..+..++
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l 80 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL 80 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence 46778999999999999999999999874411122355665544333 344555555554
No 239
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.87 E-value=0.00024 Score=64.47 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC--CC----HHH-------HHHHHHHHHccCCCCCccc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP--LD----LFK-------LQTEIATALKQSLPENEDK 71 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~--~~----~~~-------~~~~i~~~l~~~~~~~~~~ 71 (607)
.+++.+.|++|.|||.||.+.+-+.-.. ..|+.++++...-. .+ ..+ ...-+...+..-. .
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~-----~ 92 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF-----G 92 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS------
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh-----C
Confidence 4689999999999999999999776333 77888888853211 11 111 1112222222111 0
Q ss_pred ccchHHHHHHH---------hcC---CcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhh
Q 007339 72 VRRPGRLLGML---------KAK---EKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRV 126 (607)
Q Consensus 72 ~~~~~~l~~~~---------~~~---~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~ 126 (607)
......+.+.- .+| .+..+|+|++++... +++...+...+.+||||++.-..+.
T Consensus 93 ~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~-~~~k~ilTR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 93 KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTP-EELKMILTRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--H-HHHHHHHTTB-TT-EEEEEE-----
T ss_pred hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCH-HHHHHHHcccCCCcEEEEecCceee
Confidence 11122222110 022 468999999998742 2233334445789999999885443
No 240
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.0011 Score=56.23 Aligned_cols=28 Identities=46% Similarity=0.609 Sum_probs=24.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK 32 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 32 (607)
.--|+|+|++|+||||++..+++..+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 3458999999999999999999998754
No 241
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.82 E-value=0.00047 Score=63.52 Aligned_cols=84 Identities=27% Similarity=0.315 Sum_probs=36.0
Q ss_pred ccCCCCCCEEeccCC--chh-hhHHhccCCCCCCeeeccCCcCCc---CCCccccCCCCCCEEEcccCcchhhhhH--HH
Q 007339 397 LAKLLALQYLDLEGT--WIE-EVLECMEMLENLSHLYLSSLQLKK---FPTGILPRLRNLYKLKLSFGNEALRETV--EE 468 (607)
Q Consensus 397 ~~~l~~L~~L~l~~~--~l~-~l~~~~~~l~~L~~L~l~~~~l~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~ 468 (607)
+..+++|+.|.++.| .+. .++.-..++++|++|++++|.++. +.+ +..+.+|.+|++.+|........ ..
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhhhcccCCccccccHHHHH
Confidence 334444444444444 222 222223334555555555554332 211 24555555555555432221111 33
Q ss_pred hhcccccccEEEeee
Q 007339 469 AASLSDGLDYFEGCF 483 (607)
Q Consensus 469 l~~l~~~L~~L~l~~ 483 (607)
+.-++ +|+.|+-..
T Consensus 139 f~ll~-~L~~LD~~d 152 (260)
T KOG2739|consen 139 FLLLP-SLKYLDGCD 152 (260)
T ss_pred HHHhh-hhccccccc
Confidence 44455 666666543
No 242
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.82 E-value=0.0052 Score=60.96 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHHccC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK---PNKFNDVIWVTVSQPLDLFKLQTEIATALKQS 64 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 64 (607)
..+.-|+|++|+|||+||.+++-..... +..-..++||+....++...+.+ +++.++..
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 3567799999999999999997654321 12234699999999888877665 55666543
No 243
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.81 E-value=0.0073 Score=67.22 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=48.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
.++.++|++|+|||.+|+.++.... ...+.+++++-.+.. .+.+.++.+. +.-..+....+.+.+...
T Consensus 485 ~~~lf~Gp~GvGKT~lA~~la~~l~------~~~~~~d~se~~~~~----~~~~lig~~~--gyvg~~~~~~l~~~~~~~ 552 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELAKQLAEALG------VHLERFDMSEYMEKH----TVSRLIGAPP--GYVGFEQGGLLTEAVRKH 552 (731)
T ss_pred eeEEEECCCCccHHHHHHHHHHHhc------CCeEEEeCchhhhcc----cHHHHhcCCC--CCcccchhhHHHHHHHhC
Confidence 3578999999999999999999873 225666655422211 2222233221 111111233344555456
Q ss_pred CcEEEEEecCCCc
Q 007339 86 EKFVLILDDMWEA 98 (607)
Q Consensus 86 ~~~LlVlDdv~~~ 98 (607)
+..+++||+++..
T Consensus 553 p~~VvllDEieka 565 (731)
T TIGR02639 553 PHCVLLLDEIEKA 565 (731)
T ss_pred CCeEEEEechhhc
Confidence 6789999999866
No 244
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.80 E-value=0.0042 Score=58.22 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 49 (607)
..++.|.|.+|+||||+|.+++...... -..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~---g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQ---GKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCCCCH
Confidence 5688999999999999999999887422 23588888765543
No 245
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.78 E-value=0.016 Score=64.97 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+++.++|++|+|||++|+.++....
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999999974
No 246
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.78 E-value=0.0052 Score=68.62 Aligned_cols=150 Identities=11% Similarity=0.130 Sum_probs=79.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.|+|++|+|||++|+.+++... .. .+.++... + .... . .........+.+....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~---~~---~i~i~~~~------i----~~~~----~--g~~~~~l~~lf~~a~~ 269 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAG---AY---FISINGPE------I----MSKY----Y--GESEERLREIFKEAEE 269 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhC---Ce---EEEEecHH------H----hccc----c--cHHHHHHHHHHHHHHh
Confidence 35688999999999999999999864 21 23333221 0 0000 0 0111223344444445
Q ss_pred CCcEEEEEecCCCccc-------------ccccccCCCCC-CCCcEEEE-EeCchhhh-hh---c-ccce-eecccCCHH
Q 007339 85 KEKFVLILDDMWEAFP-------------LQEIGIPEPSE-ENGCKLVI-TTRLYRVC-RS---M-KCKQ-VAVELLSKQ 143 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~-------------~~~l~~~~~~~-~~~~~Ili-TtR~~~~~-~~---~-~~~~-~~l~~L~~~ 143 (607)
..+.+|+||+++.... ...+...+... ..+..++| ||...... .. . .... +.+...+.+
T Consensus 270 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~ 349 (733)
T TIGR01243 270 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKR 349 (733)
T ss_pred cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHH
Confidence 6678999999875421 11122222111 12333444 44432211 11 1 1222 677777888
Q ss_pred HHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH
Q 007339 144 EAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL 180 (607)
Q Consensus 144 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL 180 (607)
+..+++.......... .+...+.+++.+.|..-
T Consensus 350 ~R~~Il~~~~~~~~l~----~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 350 ARKEILKVHTRNMPLA----EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred HHHHHHHHHhcCCCCc----cccCHHHHHHhCCCCCH
Confidence 8888888665433211 22346778888888753
No 247
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0043 Score=61.69 Aligned_cols=91 Identities=19% Similarity=0.248 Sum_probs=49.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
++.++|+|.|++|+||||++..++..+..+ .+ .+..+++.... ...+-+...++.++.+.....+... ..+.++.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~--Gk-kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~-L~~aL~~ 314 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGK--KK-TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAA-MTRALTY 314 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHc--CC-cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHH-HHHHHHH
Confidence 345899999999999999999999887532 22 36677765532 1112222333344443322222222 2233333
Q ss_pred Hhc-CCcEEEEEecCCC
Q 007339 82 LKA-KEKFVLILDDMWE 97 (607)
Q Consensus 82 ~~~-~~~~LlVlDdv~~ 97 (607)
+.. ...=++++|-.-.
T Consensus 315 lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 315 FKEEARVDYILIDTAGK 331 (436)
T ss_pred HHhccCCCEEEEeCccc
Confidence 322 1235778887643
No 248
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.78 E-value=0.0058 Score=56.00 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=30.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCC-------CCeEEEEEeCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNK-------FNDVIWVTVSQP 47 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~-------f~~~~wv~~~~~ 47 (607)
.++.|.|++|+|||+++.+++......... -..+.|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478999999999999999999887642122 225999988775
No 249
>PRK10536 hypothetical protein; Provisional
Probab=96.77 E-value=0.0019 Score=60.47 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=61.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeC----C-----CCCHHHHH----HHHHHHHccCCCCC-cc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVS----Q-----PLDLFKLQ----TEIATALKQSLPEN-ED 70 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~----~-----~~~~~~~~----~~i~~~l~~~~~~~-~~ 70 (607)
..+|.+.|++|+|||+||..++.+.-.. ..|+.++-.... + +-+..+-. .-+...+..-.... ..
T Consensus 74 ~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~ 152 (262)
T PRK10536 74 KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQ 152 (262)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 3589999999999999999998863211 335544444311 1 11222211 12222221100000 00
Q ss_pred -----cccchHH-HHHHHhcC---CcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhh
Q 007339 71 -----KVRRPGR-LLGMLKAK---EKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRV 126 (607)
Q Consensus 71 -----~~~~~~~-l~~~~~~~---~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~ 126 (607)
....+.- =...+ +| ..-++|+|.+++... ..+...+...+.++++|+|.-..++
T Consensus 153 ~~~~~~~~~Iei~~l~ym-RGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk~v~~GD~~Qi 215 (262)
T PRK10536 153 YCLRPEIGKVEIAPFAYM-RGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVTVIVNGDITQC 215 (262)
T ss_pred HHHHhccCcEEEecHHHh-cCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCEEEEeCChhhc
Confidence 0000000 01122 33 346999999988854 3343444555789999999885443
No 250
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.76 E-value=0.0047 Score=65.72 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...|.|+|++|+|||++|+.+.+..
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999997653
No 251
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.76 E-value=0.0047 Score=55.47 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=28.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
++.+.|++|+||||+++.++..+... . ..++.+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g-~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--G-KKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--C-CcEEEEEcCC
Confidence 68899999999999999999887633 1 2366676554
No 252
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.76 E-value=0.00079 Score=62.05 Aligned_cols=106 Identities=21% Similarity=0.197 Sum_probs=72.1
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccc--cCCCCCC-cccCCCCCCEEeccCCchhhhH--HhccCCCC
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWC--GRLKRVP-SLAKLLALQYLDLEGTWIEEVL--ECMEMLEN 425 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~--~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~--~~~~~l~~ 425 (607)
+..+..|..|++.+..++.+. .+..+++|++|.++.| .....++ ...++++|++|++++|+++.+. ..+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 445666777777776666543 4677889999999988 4444555 5566799999999999776421 23567778
Q ss_pred CCeeeccCCcCCcCC---CccccCCCCCCEEEccc
Q 007339 426 LSHLYLSSLQLKKFP---TGILPRLRNLYKLKLSF 457 (607)
Q Consensus 426 L~~L~l~~~~l~~~~---~~~~~~l~~L~~L~l~~ 457 (607)
|..|++.+|..+.+. ..+|.-+++|+.|+-..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 888998888655432 23455667777665544
No 253
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.75 E-value=0.0013 Score=63.31 Aligned_cols=80 Identities=24% Similarity=0.289 Sum_probs=45.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-+.++|+.|+|||++++.+...... ..| .+.-++++...+...++..+...+.......-... .
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~--~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~-----------~ 98 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDS--DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPP-----------G 98 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTT--CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEE-----------S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCc--ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCC-----------C
Confidence 456799999999999999999877542 111 24455665544444433322222111100000111 4
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
+++.++++||+.-.
T Consensus 99 ~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 99 GKKLVLFIDDLNMP 112 (272)
T ss_dssp SSEEEEEEETTT-S
T ss_pred CcEEEEEecccCCC
Confidence 78999999998643
No 254
>PRK14974 cell division protein FtsY; Provisional
Probab=96.75 E-value=0.0062 Score=60.25 Aligned_cols=91 Identities=19% Similarity=0.158 Sum_probs=52.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCCCCCccccc---chHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSLPENEDKVR---RPGRLL 79 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~l~ 79 (607)
+..+|++.|++|+||||.++.++..+... .+ .+..+...... ...+-+...+..++.+........+ ......
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN--GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 46799999999999999999999887532 23 35556544321 2223345566666655433221111 111222
Q ss_pred HHHh-cCCcEEEEEecCCCc
Q 007339 80 GMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 80 ~~~~-~~~~~LlVlDdv~~~ 98 (607)
+... .+.. ++++|..-..
T Consensus 216 ~~~~~~~~D-vVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGID-VVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCC-EEEEECCCcc
Confidence 2222 3333 9999988654
No 255
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.72 E-value=0.00025 Score=58.39 Aligned_cols=88 Identities=19% Similarity=0.148 Sum_probs=51.1
Q ss_pred CCCCceEEEccCCCCccCCccccC-CccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 353 HMNGLKVLNLSHTDIEVLPSSISD-LTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
...+|...++++|.+..+|+.|.. .+.++.+++++|.+. .+| .+..++.|+.|+++.|.+...|.-+..+.+|-.|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 344555566666666666654433 345666666655433 334 56666666666666666666666555566666666
Q ss_pred ccCCcCCcCCC
Q 007339 431 LSSLQLKKFPT 441 (607)
Q Consensus 431 l~~~~l~~~~~ 441 (607)
..+|....++-
T Consensus 130 s~~na~~eid~ 140 (177)
T KOG4579|consen 130 SPENARAEIDV 140 (177)
T ss_pred CCCCccccCcH
Confidence 66665555543
No 256
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.72 E-value=0.0072 Score=58.30 Aligned_cols=93 Identities=22% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHccCCCC---CcccccchHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD-LFKLQTEIATALKQSLPE---NEDKVRRPGRL 78 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l 78 (607)
+..++|++.|++|+||||.+..++..+... -..+..+++..... ..+-+....+..+.+... ..+........
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~---g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ---GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 456899999999999999999999888532 23577887664322 122233344444433211 11111111122
Q ss_pred HHHHhcCCcEEEEEecCCCc
Q 007339 79 LGMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 79 ~~~~~~~~~~LlVlDdv~~~ 98 (607)
......+..-++|+|-.-..
T Consensus 147 l~~~~~~~~D~ViIDT~G~~ 166 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGRL 166 (272)
T ss_pred HHHHHHCCCCEEEEeCCCCC
Confidence 22222344567888876443
No 257
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.70 E-value=0.0078 Score=57.54 Aligned_cols=91 Identities=18% Similarity=0.216 Sum_probs=54.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC------------CCcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEK---PNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP------------ENED 70 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~~~ 70 (607)
.+.=|+|++|+|||+||.+++-..... +..-..++||+-...+....+.+ |++..+.... .-..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-HhhccccccchhhhceeeeecCCHHH
Confidence 467799999999999999987654322 12234599999999888777654 5554432110 0001
Q ss_pred cccchHHHHHHHhcCCcEEEEEecCCC
Q 007339 71 KVRRPGRLLGMLKAKEKFVLILDDMWE 97 (607)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~LlVlDdv~~ 97 (607)
....+..+...+.+.+--|||+|.+..
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSIaa 144 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSIAA 144 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSH
T ss_pred HHHHHHHHHhhccccceEEEEecchHH
Confidence 112222333333345677888888743
No 258
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.70 E-value=0.0095 Score=62.65 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=29.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEe
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTV 44 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 44 (607)
.+++.++||+|+||||.++.+++.+. |+.+-|.+.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg-----~~v~Ew~np 79 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELG-----FEVQEWINP 79 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC-----CeeEEecCC
Confidence 46899999999999999999999964 677778753
No 259
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.68 E-value=0.0057 Score=59.51 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD-LFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
..++|+|.|++|+||||++..++..+..+ +.-..+..|+...... ..+-+....+.++.+.....+.. ......+.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~-~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~-~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE-HGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPK-ELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH-cCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHH-HHHHHHHHc
Confidence 46799999999999999999999887532 1113477777665321 22223333444444432222221 223333333
Q ss_pred hcCCcEEEEEecC
Q 007339 83 KAKEKFVLILDDM 95 (607)
Q Consensus 83 ~~~~~~LlVlDdv 95 (607)
. ..=++++|..
T Consensus 271 -~-~~d~vliDt~ 281 (282)
T TIGR03499 271 -R-DKDLILIDTA 281 (282)
T ss_pred -c-CCCEEEEeCC
Confidence 2 3457777753
No 260
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.68 E-value=0.0086 Score=59.44 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=41.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHHc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK---PNKFNDVIWVTVSQPLDLFKLQTEIATALK 62 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 62 (607)
..++-|+|++|+|||++|.+++...... +..-..++||+....++...+.+ +++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 4678899999999999999998876421 11123699999998888766544 444444
No 261
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0035 Score=56.19 Aligned_cols=50 Identities=24% Similarity=0.190 Sum_probs=35.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIAT 59 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 59 (607)
...+|+|-||-|+||||||+.+++++..+ +++-.+.+.+-++.+++.+-+
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~------~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFK------VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCc------eeeecccCChHHHHHHHhHHH
Confidence 46789999999999999999999998522 444445554445555554443
No 262
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.66 E-value=0.0065 Score=62.36 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=41.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSL 65 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~ 65 (607)
....+|.++|++|+||||.|..++..++.. .+ .+..+++.... ...+-+..+++.++.+.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~--g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~ 153 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK--GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPF 153 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc--CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcE
Confidence 346789999999999999999999988643 22 46666655422 23444555666666543
No 263
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.65 E-value=0.0052 Score=67.05 Aligned_cols=146 Identities=12% Similarity=0.086 Sum_probs=77.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKE 86 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (607)
-|.|+|++|+|||++|+.++..... . .+.++.+. +.. .... ........+........
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~---~---f~~is~~~------~~~----~~~g------~~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKV---P---FFTISGSD------FVE----MFVG------VGASRVRDMFEQAKKAA 244 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCC---C---EEEEehHH------hHH----hhhc------ccHHHHHHHHHHHHhcC
Confidence 3899999999999999999988642 2 23333221 110 0000 00112233334444567
Q ss_pred cEEEEEecCCCccc----------------ccccccCCCC--CCCCcEEEEEeCchhhhhh----c-ccce-eecccCCH
Q 007339 87 KFVLILDDMWEAFP----------------LQEIGIPEPS--EENGCKLVITTRLYRVCRS----M-KCKQ-VAVELLSK 142 (607)
Q Consensus 87 ~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~----~-~~~~-~~l~~L~~ 142 (607)
+++++||+++.... +..+...+.. ...+..+|.||........ . +... +.+..-+.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 89999999976511 1111111111 1234445557765443321 1 1222 67777778
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCL 178 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 178 (607)
++-.+++..+........ +.....+++.+.|+
T Consensus 325 ~~R~~Il~~~~~~~~l~~----~~d~~~la~~t~G~ 356 (644)
T PRK10733 325 RGREQILKVHMRRVPLAP----DIDAAIIARGTPGF 356 (644)
T ss_pred HHHHHHHHHHhhcCCCCC----cCCHHHHHhhCCCC
Confidence 888888887775542221 11234566666664
No 264
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.65 E-value=0.017 Score=60.76 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=89.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccc---CC--CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQE---KP--NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRL 78 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~---~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 78 (607)
....+-|.|-+|.|||+.+..+.+.++. ++ ..|+ .+.|+.-.-....+++..|..++......+.- ....+
T Consensus 421 ~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~---al~~L 496 (767)
T KOG1514|consen 421 LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGERVTWDA---ALEAL 496 (767)
T ss_pred CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccCcccHHH---HHHHH
Confidence 3458899999999999999999997752 11 2243 45566555567899999999999875443322 23333
Q ss_pred HHHHh----cCCcEEEEEecCCCccc----ccccccCCCCCCCCcEEEEEeCc------h-----hhhhhcccceeeccc
Q 007339 79 LGMLK----AKEKFVLILDDMWEAFP----LQEIGIPEPSEENGCKLVITTRL------Y-----RVCRSMKCKQVAVEL 139 (607)
Q Consensus 79 ~~~~~----~~~~~LlVlDdv~~~~~----~~~l~~~~~~~~~~~~IliTtR~------~-----~~~~~~~~~~~~l~~ 139 (607)
..++. ..+.+++++|+++.+.. +-.-...|+ ..++++++|.+=- + .+..+++..-+..++
T Consensus 497 ~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp-t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~p 575 (767)
T KOG1514|consen 497 NFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP-TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQP 575 (767)
T ss_pred HHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC-cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCC
Confidence 33333 35789999999986632 111112222 3446665554431 1 112222333366777
Q ss_pred CCHHHHHHHhHhhhCC
Q 007339 140 LSKQEAFNLFIDGVGS 155 (607)
Q Consensus 140 L~~~ea~~L~~~~~~~ 155 (607)
.++++-.++...++..
T Consensus 576 Yth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 576 YTHEQLQEIISARLKG 591 (767)
T ss_pred CCHHHHHHHHHHhhcc
Confidence 7777777777766644
No 265
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.63 E-value=0.0025 Score=54.25 Aligned_cols=45 Identities=31% Similarity=0.338 Sum_probs=35.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSL 65 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 65 (607)
+|+|.|++|+||||+|+.+++++.-+ .+ +...++++++++.+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--------ee------eccHHHHHHHHHcCCCH
Confidence 68999999999999999999998521 12 34568888998887653
No 266
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.63 E-value=0.0015 Score=55.33 Aligned_cols=22 Identities=45% Similarity=0.779 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
|+|.|++|+||||+|+++....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999985
No 267
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.63 E-value=0.024 Score=55.35 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=29.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDL 50 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 50 (607)
+.|.|.|++|+|||++|++++...... .+-|.+....+.
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~------~~rV~~~~~l~~ 103 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWP------CVRVNLDSHVSR 103 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCC------eEEEEecCCCCh
Confidence 568999999999999999999998522 446666555443
No 268
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.63 E-value=0.0076 Score=55.83 Aligned_cols=180 Identities=17% Similarity=0.065 Sum_probs=111.8
Q ss_pred cHHHHHHHHHHhcCCCcEEEEcCcccccCCChhhhhhhcccccchhhhcCCCCceEEEccCCCCc-cCC----ccccCCc
Q 007339 304 HDLIRDMALRITSKSPLFMVKAGLRLLKFPSEQEWEENLERRIPECFFVHMNGLKVLNLSHTDIE-VLP----SSISDLT 378 (607)
Q Consensus 304 H~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~----~~~~~l~ 378 (607)
-..+++++..++......++.-+.-..... +.....++.-.+| ++..|++|+..+||.|.|. ..| +.+++..
T Consensus 44 tEA~e~l~~~ia~~~~L~vvnfsd~ftgr~-kde~~~~L~~Ll~--aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t 120 (388)
T COG5238 44 TEAMEELCNVIANVRNLRVVNFSDAFTGRD-KDELYSNLVMLLK--ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSST 120 (388)
T ss_pred HHHHHHHHHHHhhhcceeEeehhhhhhccc-HHHHHHHHHHHHH--HHhcCCcceeeeccccccCcccchHHHHHHhcCC
Confidence 356677777777666555554333332222 2222223332222 3668999999999999876 333 3467778
Q ss_pred cCcEeecccccCCCCCC-c-------------ccCCCCCCEEeccCCchhhhHH-----hccCCCCCCeeeccCCcCCcC
Q 007339 379 NLRSLLLRWCGRLKRVP-S-------------LAKLLALQYLDLEGTWIEEVLE-----CMEMLENLSHLYLSSLQLKKF 439 (607)
Q Consensus 379 ~L~~L~l~~~~~~~~~~-~-------------~~~l~~L~~L~l~~~~l~~l~~-----~~~~l~~L~~L~l~~~~l~~~ 439 (607)
.|.+|.+++|..-.... - ..+-+.|++.....|++...|. .+..-.+|+.+.+..|.+..-
T Consensus 121 ~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpe 200 (388)
T COG5238 121 DLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPE 200 (388)
T ss_pred CceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcc
Confidence 89999999887543222 1 2345678888888887764433 233335788888888876422
Q ss_pred C-----CccccCCCCCCEEEcccCcchhhhh---HHHhhcccccccEEEeeecCcc
Q 007339 440 P-----TGILPRLRNLYKLKLSFGNEALRET---VEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 440 ~-----~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
. ..-+..+.+|++|+|..|..+.... ...++..+ .|++|.+..|-++
T Consensus 201 gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls 255 (388)
T COG5238 201 GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLS 255 (388)
T ss_pred hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhc
Confidence 1 1113577888999998886543332 25667777 7888888877654
No 269
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.62 E-value=0.0073 Score=59.98 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=41.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHHcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK---PNKFNDVIWVTVSQPLDLFKLQTEIATALKQ 63 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 63 (607)
..++-|+|.+|+|||++|..++-..... +..-..++||+....++...+. ++++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 4678899999999999999888654321 1122369999999988877664 45666554
No 270
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.62 E-value=0.002 Score=59.96 Aligned_cols=29 Identities=45% Similarity=0.524 Sum_probs=26.3
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 1 MDDKVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 1 ~~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
|.....+|+|.|++|+||||||+.++..+
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678899999999999999999999987
No 271
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.61 E-value=0.0014 Score=60.92 Aligned_cols=52 Identities=29% Similarity=0.367 Sum_probs=36.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQT 55 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 55 (607)
....+|+|+|++|+|||||..++...+..+ .+--.|+-|+.+.+++-..++-
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGGCC---SS-
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCCCCCCcccc
Confidence 457899999999999999999999998765 4455688888888877655543
No 272
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.61 E-value=0.012 Score=66.52 Aligned_cols=132 Identities=13% Similarity=0.175 Sum_probs=69.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCC----CC-eEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNK----FN-DVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLG 80 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~----f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (607)
+.+.++|++|+|||++|+.++.+.... .. .+ .++.++++. +. . ..... ......+..+.+
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~-~~p~~l~~~~~~~l~~~~------l~----a---~~~~~-g~~e~~l~~~l~ 259 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNG-DVPESLKNKRLLALDMGA------LI----A---GAKYR-GEFEERLKAVLN 259 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhcc-CCchhhcCCeEEEeeHHH------Hh----h---cchhh-hhHHHHHHHHHH
Confidence 456789999999999999999987421 10 11 233333211 10 0 00000 111223444444
Q ss_pred HHh-cCCcEEEEEecCCCccc---------ccccccCCCCCCCCcEEEEEeCchhhhh--------hcccceeecccCCH
Q 007339 81 MLK-AKEKFVLILDDMWEAFP---------LQEIGIPEPSEENGCKLVITTRLYRVCR--------SMKCKQVAVELLSK 142 (607)
Q Consensus 81 ~~~-~~~~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~IliTtR~~~~~~--------~~~~~~~~l~~L~~ 142 (607)
.+. .+++.+|++|+++.... ...+..+....+ .-++|-+|.....-. .-....+.++..+.
T Consensus 260 ~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~ 338 (852)
T TIGR03346 260 EVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTV 338 (852)
T ss_pred HHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCH
Confidence 443 35689999999986531 111222222222 234554554333211 11233378888899
Q ss_pred HHHHHHhHhhh
Q 007339 143 QEAFNLFIDGV 153 (607)
Q Consensus 143 ~ea~~L~~~~~ 153 (607)
++..+++....
T Consensus 339 ~~~~~iL~~~~ 349 (852)
T TIGR03346 339 EDTISILRGLK 349 (852)
T ss_pred HHHHHHHHHHH
Confidence 99999887553
No 273
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.61 E-value=0.0037 Score=70.19 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
..++.++|++|+|||.+|+.++.... ......+-++++.-.+ -+.+.+-++.+. .-.+ ......+...+.+
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~---~~~~~~~~~dmse~~~----~~~~~~l~g~~~-gyvg-~~~~g~L~~~v~~ 666 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLY---GGEQNLITINMSEFQE----AHTVSRLKGSPP-GYVG-YGEGGVLTEAVRR 666 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh---CCCcceEEEeHHHhhh----hhhhccccCCCC-Cccc-ccccchHHHHHHh
Confidence 34689999999999999999998874 2222344444433211 112222223221 1000 0112234455556
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
.+.-+|+||+++..
T Consensus 667 ~p~svvllDEieka 680 (852)
T TIGR03345 667 KPYSVVLLDEVEKA 680 (852)
T ss_pred CCCcEEEEechhhc
Confidence 77889999999755
No 274
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.61 E-value=0.0038 Score=59.42 Aligned_cols=92 Identities=18% Similarity=0.251 Sum_probs=53.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccC------CCCCcccc-----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQS------LPENEDKV----- 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~----- 72 (607)
...++|.|.+|+|||+|+.++++..+.. +-+.++++-+.+.. +..++.+.+...=..+ ........
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 3467999999999999999999997632 22335666665543 3455555554321110 00011111
Q ss_pred -cchHHHHHHHh-c-CCcEEEEEecCCCc
Q 007339 73 -RRPGRLLGMLK-A-KEKFVLILDDMWEA 98 (607)
Q Consensus 73 -~~~~~l~~~~~-~-~~~~LlVlDdv~~~ 98 (607)
...-.+.+.+. + ++++|+++||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11122333333 4 89999999998654
No 275
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.0073 Score=59.89 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=54.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD-LFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
+.++++|.|+.|+||||++..++.....+ . ..+.++++..... ..+-++..++.++.+.....+.. ......+.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~-dL~~al~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--N-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPA-ELEEAVQYM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHH-HHHHHHHHH
Confidence 46899999999999999999999877433 1 3478888765433 23334445555554432222222 223333333
Q ss_pred h-cCCcEEEEEecCCC
Q 007339 83 K-AKEKFVLILDDMWE 97 (607)
Q Consensus 83 ~-~~~~~LlVlDdv~~ 97 (607)
. .+..-++++|-.-.
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 2 13457888887744
No 276
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.61 E-value=0.05 Score=53.65 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=36.3
Q ss_pred eeecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 134 QVAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 134 ~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
.++++.++++|+..++.-............++...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 4789999999999999877766533322336667777877889999754
No 277
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.59 E-value=0.0066 Score=68.44 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=47.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
..+.++|+.|+|||+||+.+++.+-.. -...+-++++.-.+... +.+.++.+. +.-.......+...+...
T Consensus 540 ~~~lf~Gp~GvGKt~lA~~LA~~l~~~---~~~~~~~d~s~~~~~~~----~~~l~g~~~--gyvg~~~~~~l~~~~~~~ 610 (821)
T CHL00095 540 ASFLFSGPTGVGKTELTKALASYFFGS---EDAMIRLDMSEYMEKHT----VSKLIGSPP--GYVGYNEGGQLTEAVRKK 610 (821)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCC---ccceEEEEchhcccccc----HHHhcCCCC--cccCcCccchHHHHHHhC
Confidence 356789999999999999999887421 22345555544222111 112222211 111111222344555456
Q ss_pred CcEEEEEecCCCc
Q 007339 86 EKFVLILDDMWEA 98 (607)
Q Consensus 86 ~~~LlVlDdv~~~ 98 (607)
...+++||+++..
T Consensus 611 p~~VvllDeieka 623 (821)
T CHL00095 611 PYTVVLFDEIEKA 623 (821)
T ss_pred CCeEEEECChhhC
Confidence 6689999999866
No 278
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.58 E-value=0.0018 Score=60.94 Aligned_cols=53 Identities=25% Similarity=0.388 Sum_probs=43.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTE 56 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 56 (607)
+...+|+|+|.||+|||||...+...+..+ .+-..|+=|+.+++++...++-.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCCCCCcccccc
Confidence 467799999999999999999999998655 55567888999998886666543
No 279
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.58 E-value=0.0082 Score=60.49 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCc-ccccchHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENE-DKVRRPGRLLGMLK 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~~~ 83 (607)
..++.|.|.+|+|||||+.+++...... -..++|++.... ..++. .-++.++.....-. ........+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4588999999999999999999887532 245888886543 33332 22344543221110 11223455666665
Q ss_pred cCCcEEEEEecCCCc
Q 007339 84 AKEKFVLILDDMWEA 98 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~ 98 (607)
..+.-++|+|.+...
T Consensus 156 ~~~~~lVVIDSIq~l 170 (372)
T cd01121 156 ELKPDLVIIDSIQTV 170 (372)
T ss_pred hcCCcEEEEcchHHh
Confidence 667889999998654
No 280
>PTZ00035 Rad51 protein; Provisional
Probab=96.57 E-value=0.011 Score=58.87 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=40.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHHcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK---PNKFNDVIWVTVSQPLDLFKLQTEIATALKQ 63 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 63 (607)
..++.|+|++|+|||+|+.+++-..+.. +..-..++||+....++...+ .++++.++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 4678899999999999999998654321 112335889998877776653 344555543
No 281
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.57 E-value=0.0021 Score=58.88 Aligned_cols=26 Identities=35% Similarity=0.574 Sum_probs=23.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEK 32 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~ 32 (607)
+|+|.|++|+||||+|+.++..+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999998643
No 282
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.56 E-value=0.0057 Score=55.68 Aligned_cols=44 Identities=20% Similarity=0.107 Sum_probs=31.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHH
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQT 55 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 55 (607)
++.|.|++|+|||++|.+++...... =..+.|++.... ..++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~e~~--~~~~~~ 44 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTLEES--PEELIE 44 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEECCCC--HHHHHH
Confidence 36899999999999999998876422 234888887653 444433
No 283
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.011 Score=56.55 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=58.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh-
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK- 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~- 83 (607)
.+++=|+|+.|.||||+|.+++-..+.. -..++||+..+.+++..+...-...+..-.....+..+....+.+.+.
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~---g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~ 136 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKP---GGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLAR 136 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcC---CCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHH
Confidence 4678899999999999999998887643 236999999998887665543333232222222333333333433333
Q ss_pred cC--CcEEEEEecCCCc
Q 007339 84 AK--EKFVLILDDMWEA 98 (607)
Q Consensus 84 ~~--~~~LlVlDdv~~~ 98 (607)
.. +--|+|+|.+-..
T Consensus 137 ~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 137 SGAEKIDLLVVDSVAAL 153 (279)
T ss_pred hccCCCCEEEEecCccc
Confidence 12 3679999998544
No 284
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.55 E-value=0.0011 Score=65.55 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEe
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTV 44 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 44 (607)
..-+.++|++|+|||.||..+++....+ .+ .++|+++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~--g~-~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR--GK-SVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC--CC-eEEEEEH
Confidence 3679999999999999999999988533 22 4777764
No 285
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.55 E-value=0.0032 Score=60.81 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhh
Q 007339 86 EKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRV 126 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~ 126 (607)
.+.++|+|.+++.+. .++...+...+.|+||+.|.-..++
T Consensus 351 ~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 351 PDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred ccceEEEehhhccCH-HHHHHHHHhccCCCEEEEcCCHHHc
Confidence 567999999998854 3333444556889999999885444
No 286
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.53 E-value=0.025 Score=52.48 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=56.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh-
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK- 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~- 83 (607)
..-+.+||..|+|||++++.+.+.+..++ =.++-|.-.+-.++..++ +.+.
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~~L~~l~~l~-------------------------~~l~~ 103 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKEDLGDLPELL-------------------------DLLRD 103 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHHHhccHHHHH-------------------------HHHhc
Confidence 45588999999999999999999987542 123333322222222222 2222
Q ss_pred cCCcEEEEEecCCCc---ccccccccC----CCCCCCCcEEEEEeCchhhhh
Q 007339 84 AKEKFVLILDDMWEA---FPLQEIGIP----EPSEENGCKLVITTRLYRVCR 128 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~---~~~~~l~~~----~~~~~~~~~IliTtR~~~~~~ 128 (607)
.+.+++|++||+.=. .....+... +.....+..|..||.-+++..
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 467999999997522 122222221 222234566777777665544
No 287
>PRK06217 hypothetical protein; Validated
Probab=96.53 E-value=0.0044 Score=56.22 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=26.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEE
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWV 42 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv 42 (607)
.|+|.|.+|+||||+|++++..+....-.-|.++|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 489999999999999999999875321122445564
No 288
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.53 E-value=0.0045 Score=52.38 Aligned_cols=107 Identities=13% Similarity=0.202 Sum_probs=63.4
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEM 422 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~ 422 (607)
++...|.++++|+.+.+.. .+..++. .|..+.+|+.+.+..+ ...... .+.++..|+.+.+.. .+..++. .+..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 5667788999999999885 5666654 5778888999988764 333222 678887899999875 5555554 4566
Q ss_pred CCCCCeeeccCCcCCcCCCccccCCCCCCEEEccc
Q 007339 423 LENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSF 457 (607)
Q Consensus 423 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 457 (607)
+++|+.+.+..+ +..++...+.++ +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 888999988765 677777777787 888887764
No 289
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.52 E-value=0.016 Score=64.39 Aligned_cols=135 Identities=14% Similarity=0.189 Sum_probs=69.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+++.++|++|+||||+|+.++.... ..| +-++++...+..++...-.... .. ....+.+.+.
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~---~~~---~~i~~~~~~d~~~i~g~~~~~~-------g~---~~G~~~~~l~ 411 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATG---RKY---VRMALGGVRDEAEIRGHRRTYI-------GS---MPGKLIQKMA 411 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---CCE---EEEEcCCCCCHHHhccchhccC-------CC---CCcHHHHHHH
Confidence 456899999999999999999998764 222 2234444333222111100000 00 1112222222
Q ss_pred --cCCcEEEEEecCCCcccc------cccccCCCC---------------CCCCcEEEEEeCchhhhhhc--ccceeecc
Q 007339 84 --AKEKFVLILDDMWEAFPL------QEIGIPEPS---------------EENGCKLVITTRLYRVCRSM--KCKQVAVE 138 (607)
Q Consensus 84 --~~~~~LlVlDdv~~~~~~------~~l~~~~~~---------------~~~~~~IliTtR~~~~~~~~--~~~~~~l~ 138 (607)
...+-+++||.++....- ..+...+.. .-....+|.|+.+..+.... +...+++.
T Consensus 412 ~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~ 491 (784)
T PRK10787 412 KVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLS 491 (784)
T ss_pred hcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecC
Confidence 224457899999765321 112111110 01233455555543332221 22227899
Q ss_pred cCCHHHHHHHhHhhhC
Q 007339 139 LLSKQEAFNLFIDGVG 154 (607)
Q Consensus 139 ~L~~~ea~~L~~~~~~ 154 (607)
+++.+|-.++..++..
T Consensus 492 ~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 492 GYTEDEKLNIAKRHLL 507 (784)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999998888877663
No 290
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.52 E-value=0.0088 Score=57.03 Aligned_cols=75 Identities=29% Similarity=0.400 Sum_probs=47.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
..-+.++|++|+|||.||.+++++.. + ..+ .+.++.+ .++...+...... .....++.+.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~-~-~g~-sv~f~~~------~el~~~Lk~~~~~--------~~~~~~l~~~l-- 165 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELL-K-AGI-SVLFITA------PDLLSKLKAAFDE--------GRLEEKLLREL-- 165 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHH-H-cCC-eEEEEEH------HHHHHHHHHHHhc--------CchHHHHHHHh--
Confidence 44689999999999999999999986 3 222 3666653 4455555444443 11112233323
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
.+-=||||||+-..
T Consensus 166 ~~~dlLIiDDlG~~ 179 (254)
T COG1484 166 KKVDLLIIDDIGYE 179 (254)
T ss_pred hcCCEEEEecccCc
Confidence 33459999998654
No 291
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0071 Score=55.21 Aligned_cols=73 Identities=15% Similarity=0.284 Sum_probs=46.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..|=|.++|++|+|||.||+++++... ..||.+... ++ +-+.++.. ...+..+.+...
T Consensus 188 pprgvllygppg~gktml~kava~~t~--------a~firvvgs----ef---vqkylgeg-------prmvrdvfrlak 245 (408)
T KOG0727|consen 188 PPRGVLLYGPPGTGKTMLAKAVANHTT--------AAFIRVVGS----EF---VQKYLGEG-------PRMVRDVFRLAK 245 (408)
T ss_pred CCcceEEeCCCCCcHHHHHHHHhhccc--------hheeeeccH----HH---HHHHhccC-------cHHHHHHHHHHh
Confidence 456688999999999999999999865 334444331 11 11222211 123444555555
Q ss_pred cCCcEEEEEecCCCc
Q 007339 84 AKEKFVLILDDMWEA 98 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~ 98 (607)
.+.+.++++|.++..
T Consensus 246 enapsiifideidai 260 (408)
T KOG0727|consen 246 ENAPSIIFIDEIDAI 260 (408)
T ss_pred ccCCcEEEeehhhhH
Confidence 677889999988644
No 292
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.50 E-value=0.0084 Score=67.84 Aligned_cols=85 Identities=18% Similarity=0.293 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
..++.+.|++|+|||++|+.++..... .-...+.++++.-.... .+.+.++.+ .. .-.-.....+......
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~---~~~~~i~~d~s~~~~~~----~~~~l~g~~-~g-~~g~~~~g~l~~~v~~ 665 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFD---DEDAMVRIDMSEYMEKH----SVARLIGAP-PG-YVGYEEGGQLTEAVRR 665 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcC---CCCcEEEEechhhcccc----hHHHhcCCC-CC-ccCcccccHHHHHHHc
Confidence 346889999999999999999988642 22335566665432211 111222222 11 1011112234444444
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
....+++||+++..
T Consensus 666 ~p~~vlllDeieka 679 (852)
T TIGR03346 666 KPYSVVLFDEVEKA 679 (852)
T ss_pred CCCcEEEEeccccC
Confidence 55679999999866
No 293
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0066 Score=55.84 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=46.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+=|.++|++|.|||-+|++++++.. .+||.+-. .++++..-. .....+.++.+-.+.
T Consensus 211 pkgvllygppgtgktl~aravanrtd--------acfirvig--------selvqkyvg------egarmvrelf~mart 268 (435)
T KOG0729|consen 211 PKGVLLYGPPGTGKTLCARAVANRTD--------ACFIRVIG--------SELVQKYVG------EGARMVRELFEMART 268 (435)
T ss_pred CCceEEeCCCCCchhHHHHHHhcccC--------ceEEeehh--------HHHHHHHhh------hhHHHHHHHHHHhcc
Confidence 34578999999999999999999975 34444322 122222211 112244555555557
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
.|-++++||.++-.
T Consensus 269 kkaciiffdeidai 282 (435)
T KOG0729|consen 269 KKACIIFFDEIDAI 282 (435)
T ss_pred cceEEEEeeccccc
Confidence 88999999998643
No 294
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.50 E-value=0.011 Score=58.33 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=40.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccc---CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQE---KPNKFNDVIWVTVSQPLDLFKLQTEIATALKQ 63 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 63 (607)
..++.|+|.+|+|||+||.+++..... .+..-..++|++....++...+ .++++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 568899999999999999999864321 1112235899999887776653 345555543
No 295
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.50 E-value=0.0022 Score=47.36 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
+|+|.|.+|+||||+|+.+...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 296
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.49 E-value=0.01 Score=58.99 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=41.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHHc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKP---NKFNDVIWVTVSQPLDLFKLQTEIATALK 62 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 62 (607)
..++-|+|++|+|||++|.+++....... ..-..++||+....++...+.+ +++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 46788999999999999999998754321 1124699999998887766654 344444
No 297
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.0056 Score=61.79 Aligned_cols=92 Identities=14% Similarity=0.082 Sum_probs=53.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCC-CCCCeEEEEEeCCCCC-HHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKP-NKFNDVIWVTVSQPLD-LFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
..++|.++|+.|+||||.+..++..+.... ..-..+..+++..... ...-++..++.++.+........+ .......
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~-l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKD-LKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHH-HHHHHHH
Confidence 467999999999999999999998875321 1123477777665322 122245555556555432222221 2222222
Q ss_pred HhcCCcEEEEEecCCCc
Q 007339 82 LKAKEKFVLILDDMWEA 98 (607)
Q Consensus 82 ~~~~~~~LlVlDdv~~~ 98 (607)
+ +..-++++|.....
T Consensus 252 ~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 252 S--KDFDLVLVDTIGKS 266 (388)
T ss_pred h--CCCCEEEEcCCCCC
Confidence 2 44668889987543
No 298
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.46 E-value=0.016 Score=59.15 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEE
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVT 43 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 43 (607)
+.+++.|+||+|+||||-++.++..+ .+..+-|.+
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~N 143 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWSN 143 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhh-----CceeeeecC
Confidence 45799999999999999999999885 366688874
No 299
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.45 E-value=0.011 Score=58.11 Aligned_cols=98 Identities=19% Similarity=0.254 Sum_probs=59.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-+.|+|+.|+|||.||..+++....+ .+. +.++.+. ++...+....... ...+..+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~-v~~~~~~------~l~~~lk~~~~~~---------~~~~~l~~l-- 215 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKK--GVS-STLLHFP------EFIRELKNSISDG---------SVKEKIDAV-- 215 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc--CCC-EEEEEHH------HHHHHHHHHHhcC---------cHHHHHHHh--
Confidence 4568999999999999999999998632 232 5666543 4455554444211 123334444
Q ss_pred CCcEEEEEecCCCc--cccc--ccccCC-CCC-CCCcEEEEEeC
Q 007339 85 KEKFVLILDDMWEA--FPLQ--EIGIPE-PSE-ENGCKLVITTR 122 (607)
Q Consensus 85 ~~~~LlVlDdv~~~--~~~~--~l~~~~-~~~-~~~~~IliTtR 122 (607)
.+-=||||||+... ..|. ++...+ ... ..+..+|+||.
T Consensus 216 ~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 216 KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 45679999998543 3343 233322 211 23445888888
No 300
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=96.45 E-value=0.012 Score=66.45 Aligned_cols=195 Identities=19% Similarity=0.129 Sum_probs=98.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCC-CCCCeEEEEEeCC----CCCHH--HHHHHHHHHHccCCCCCcccccchHHHH
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKP-NKFNDVIWVTVSQ----PLDLF--KLQTEIATALKQSLPENEDKVRRPGRLL 79 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~-~~f~~~~wv~~~~----~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 79 (607)
-+.|.|.+|.||||+...++-....+. ..-+..+++.+.. ..... .+..-+...+.... ....... ..
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~-~~ 298 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIE-AH 298 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhH-HH
Confidence 478999999999999999988775432 1122244444331 11111 22222333332211 1111111 11
Q ss_pred HHHhcCCcEEEEEecCCCccc------ccccccCCCCCCCCcEEEEEeCchhhhhhcccce-eecccCCHHHHHHHhHhh
Q 007339 80 GMLKAKEKFVLILDDMWEAFP------LQEIGIPEPSEENGCKLVITTRLYRVCRSMKCKQ-VAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~~~~-~~l~~L~~~ea~~L~~~~ 152 (607)
..+....++++++|+++++.. ...+...++ .-+.++||+|+|....-....... +++..+.++.-.......
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~ 377 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQ 377 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHH
Confidence 455578899999999987732 112222222 223678999999665544433322 666666666544333311
Q ss_pred ---------hCCCCCCC---ccchHHHHHHHHHHcCCchHHHHHHHHhhcC-----CccHHHHHHHHHHHHh
Q 007339 153 ---------VGSSILQV---PILNKEIINEVVEECGCLPLAIVTVAASMSG-----EEEIYEWQNALNELRG 207 (607)
Q Consensus 153 ---------~~~~~~~~---~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~-----~~~~~~~~~~l~~l~~ 207 (607)
.+...... ..........-++.....|+.|.+.+..... ......++..++.+-.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 378 WLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 11111110 0000011122334448889999888844432 1235566666665544
No 301
>PRK08233 hypothetical protein; Provisional
Probab=96.43 E-value=0.0027 Score=57.52 Aligned_cols=26 Identities=31% Similarity=0.463 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999998874
No 302
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.43 E-value=0.013 Score=55.51 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=34.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTE 56 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 56 (607)
..++.|.|++|+|||++|.+++...-. .-+.++|++... +..++.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeC--CHHHHHHH
Confidence 467999999999999999998877532 234588888766 34455444
No 303
>PRK10867 signal recognition particle protein; Provisional
Probab=96.42 E-value=0.0093 Score=61.11 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
...+|.++|++|+||||.|..++..+..+ .. ..+..|++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~-~G-~kV~lV~~D~ 139 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK-KK-KKVLLVAADV 139 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-cC-CcEEEEEccc
Confidence 46789999999999999999999887533 11 2356666554
No 304
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.39 E-value=0.011 Score=66.80 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=68.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCC-----CCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNK-----FNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLG 80 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (607)
+.+.++|++|+|||++|+.++.+.... .. -..+++++++.... . .... ......+..+.+
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~-~vp~~l~~~~~~~l~l~~l~a----------g---~~~~-g~~e~~lk~~~~ 264 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIING-EVPEGLKGRRVLALDMGALVA----------G---AKYR-GEFEERLKGVLN 264 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcC-CCchhhCCCEEEEEehhhhhh----------c---cchh-hhhHHHHHHHHH
Confidence 457799999999999999999987421 10 11244444332100 0 0000 111122333333
Q ss_pred HHh-cCCcEEEEEecCCCccc---------ccccccCCCCCCCCcEEEEEeCchhhh--------hhcccceeecccCCH
Q 007339 81 MLK-AKEKFVLILDDMWEAFP---------LQEIGIPEPSEENGCKLVITTRLYRVC--------RSMKCKQVAVELLSK 142 (607)
Q Consensus 81 ~~~-~~~~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~IliTtR~~~~~--------~~~~~~~~~l~~L~~ 142 (607)
.+. .+.+++|++|+++.... ...+..+....+ .-++|-+|...... -.-....+.+..-+.
T Consensus 265 ~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~ 343 (857)
T PRK10865 265 DLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSV 343 (857)
T ss_pred HHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCH
Confidence 332 35789999999976631 112222222222 34555555544421 111222366666688
Q ss_pred HHHHHHhHhhh
Q 007339 143 QEAFNLFIDGV 153 (607)
Q Consensus 143 ~ea~~L~~~~~ 153 (607)
++...++....
T Consensus 344 ~~~~~iL~~l~ 354 (857)
T PRK10865 344 EDTIAILRGLK 354 (857)
T ss_pred HHHHHHHHHHh
Confidence 88888876543
No 305
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.38 E-value=0.0019 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...|.|+|..|+||+++|+.+.....
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 45689999999999999998887754
No 306
>PHA02244 ATPase-like protein
Probab=96.38 E-value=0.016 Score=57.28 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.|.|+|++|+|||++|++++....
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999864
No 307
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.38 E-value=0.0027 Score=59.33 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhcc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
|.|.|++|+||||+|+.++..+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999874
No 308
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.36 E-value=0.0058 Score=55.52 Aligned_cols=41 Identities=34% Similarity=0.558 Sum_probs=31.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 49 (607)
.|+|+|-||+||||+|..++.++..+ +.| .+.-|++....+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~-~~~-~VLvVDaDpd~n 42 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK-GGY-NVLVVDADPDSN 42 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc-CCc-eEEEEeCCCCCC
Confidence 58999999999999999976666544 223 488888777655
No 309
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.36 E-value=0.016 Score=52.37 Aligned_cols=119 Identities=18% Similarity=0.168 Sum_probs=60.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEE---eCCCCCHHHH------HHHHHHHHccCCC--CC---c
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVT---VSQPLDLFKL------QTEIATALKQSLP--EN---E 69 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~------~~~i~~~l~~~~~--~~---~ 69 (607)
...+++|.|+.|.|||||++.++-... ...+.++++ +.. .+.... ..++++.++.... .. -
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 346899999999999999999988753 233434442 221 121111 1123444443211 10 1
Q ss_pred ccc-cchHHHHHHHhcCCcEEEEEecCCCcc---cccccccCCCCC-CC-CcEEEEEeCchhhhh
Q 007339 70 DKV-RRPGRLLGMLKAKEKFVLILDDMWEAF---PLQEIGIPEPSE-EN-GCKLVITTRLYRVCR 128 (607)
Q Consensus 70 ~~~-~~~~~l~~~~~~~~~~LlVlDdv~~~~---~~~~l~~~~~~~-~~-~~~IliTtR~~~~~~ 128 (607)
+.. .....+.+.+ -..+-++++|+--..- ..+.+...+... .. +..||++|.+.....
T Consensus 99 S~G~~qrl~laral-~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 99 SGGERQRVLLARAL-AQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred CHHHHHHHHHHHHH-hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 111 1112233333 4567889999865332 222222222211 12 557888888766543
No 310
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.35 E-value=0.0088 Score=67.46 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=46.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
.++.++|+.|+|||++|+.++...... -...+.++++.-... ..+.+.++.+ .. .........+.......
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~---~~~~i~id~se~~~~----~~~~~LiG~~-pg-y~g~~~~g~l~~~v~~~ 669 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDS---DDAMVRIDMSEFMEK----HSVSRLVGAP-PG-YVGYEEGGYLTEAVRRR 669 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcC---CCcEEEEEhHHhhhh----hhHHHHhCCC-Cc-ccccchhHHHHHHHHhC
Confidence 468899999999999999999876321 223455665432111 1122223322 11 11111112233333344
Q ss_pred CcEEEEEecCCCc
Q 007339 86 EKFVLILDDMWEA 98 (607)
Q Consensus 86 ~~~LlVlDdv~~~ 98 (607)
+.-+|+||+++..
T Consensus 670 p~~vLllDEieka 682 (857)
T PRK10865 670 PYSVILLDEVEKA 682 (857)
T ss_pred CCCeEEEeehhhC
Confidence 5579999999855
No 311
>PRK06762 hypothetical protein; Provisional
Probab=96.34 E-value=0.0032 Score=56.10 Aligned_cols=25 Identities=36% Similarity=0.541 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+|.|.|++|+||||+|+.++..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999886
No 312
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.0057 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.|.|.|++|+||||+|+.++..+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999964
No 313
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.32 E-value=0.01 Score=56.99 Aligned_cols=40 Identities=28% Similarity=0.432 Sum_probs=31.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
..++.|.|++|+|||++|.+++.....+ =..++|++...+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEecCC
Confidence 3578999999999999999998875322 235888988753
No 314
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.32 E-value=0.0051 Score=53.25 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEE
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVT 43 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 43 (607)
.-+|.|+|.+|+||||||+++..++... -..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~---g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR---GIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT---TS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEec
Confidence 4689999999999999999999998743 23477776
No 315
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.31 E-value=0.011 Score=51.99 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=33.8
Q ss_pred cCCcEEEEEec----CCCccccc--ccccCCCCCCCCcEEEEEeCchhhhhhcccceeec
Q 007339 84 AKEKFVLILDD----MWEAFPLQ--EIGIPEPSEENGCKLVITTRLYRVCRSMKCKQVAV 137 (607)
Q Consensus 84 ~~~~~LlVlDd----v~~~~~~~--~l~~~~~~~~~~~~IliTtR~~~~~~~~~~~~~~l 137 (607)
-+++-+|+-|. +|....|+ .+...+. ..|..|+++|-+..+...+....+.+
T Consensus 153 V~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 153 VNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred ccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhccCcEEEE
Confidence 46778888885 44333333 2222332 45889999999999988887666433
No 316
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.03 Score=59.61 Aligned_cols=149 Identities=11% Similarity=0.135 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.+.++|++|.|||.||++++.... . -++.+... + +....- ......+..+.+...
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~---~-----~fi~v~~~-~-------l~sk~v------Gesek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR---S-----RFISVKGS-E-------LLSKWV------GESEKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC---C-----eEEEeeCH-H-------Hhcccc------chHHHHHHHHHHHHH
Confidence 345789999999999999999999764 2 22332221 1 111000 111223444455554
Q ss_pred cCCcEEEEEecCCCccccc-------------ccccCCC--CCCCCcEEEEEeCchhhhhhc-----ccce-eecccCCH
Q 007339 84 AKEKFVLILDDMWEAFPLQ-------------EIGIPEP--SEENGCKLVITTRLYRVCRSM-----KCKQ-VAVELLSK 142 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~~~-------------~l~~~~~--~~~~~~~IliTtR~~~~~~~~-----~~~~-~~l~~L~~ 142 (607)
+..++.+++|.++...... +++..+. ....+..||-+|..+...... +... +.+..=+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 6788999999997653222 1222221 122333445555533333211 2222 77888888
Q ss_pred HHHHHHhHhhhCCCCCC-CccchHHHHHHHHHHcCC
Q 007339 143 QEAFNLFIDGVGSSILQ-VPILNKEIINEVVEECGC 177 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~-~~~~~~~~~~~i~~~~~g 177 (607)
++..+.|..+....... . ..-..+.+++...|
T Consensus 413 ~~r~~i~~~~~~~~~~~~~---~~~~~~~l~~~t~~ 445 (494)
T COG0464 413 EERLEIFKIHLRDKKPPLA---EDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHHHhcccCCcch---hhhhHHHHHHHhcC
Confidence 99999999888754322 1 33445556665555
No 317
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0089 Score=62.86 Aligned_cols=80 Identities=24% Similarity=0.346 Sum_probs=50.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
-+.++++++||+|||||.+|+.++.-...+ | +-++++...+..++ ++. +..-....-.++.+.+
T Consensus 436 ~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk---F---fRfSvGG~tDvAeI--------kGH--RRTYVGAMPGkiIq~L 499 (906)
T KOG2004|consen 436 VQGKILCFVGPPGVGKTSIAKSIARALNRK---F---FRFSVGGMTDVAEI--------KGH--RRTYVGAMPGKIIQCL 499 (906)
T ss_pred CCCcEEEEeCCCCCCcccHHHHHHHHhCCc---e---EEEeccccccHHhh--------ccc--ceeeeccCChHHHHHH
Confidence 356899999999999999999999998532 2 33455554443222 111 1122222334455554
Q ss_pred h--cCCcEEEEEecCCCc
Q 007339 83 K--AKEKFVLILDDMWEA 98 (607)
Q Consensus 83 ~--~~~~~LlVlDdv~~~ 98 (607)
. +..+-|+.||.|+..
T Consensus 500 K~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 500 KKVKTENPLILIDEVDKL 517 (906)
T ss_pred HhhCCCCceEEeehhhhh
Confidence 3 457789999999754
No 318
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.30 E-value=0.011 Score=60.78 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD-LFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
.+++++.|++|+||||++..++..+... ..-..+..|+...... ..+-+....+.++.+.....+..+ ....++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~-l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKE-LAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHh-HHHHHHHh-
Confidence 4689999999999999999998876411 1123577887765321 122233334445544322222222 22222322
Q ss_pred cCCcEEEEEecC
Q 007339 84 AKEKFVLILDDM 95 (607)
Q Consensus 84 ~~~~~LlVlDdv 95 (607)
...-++|+|..
T Consensus 298 -~~~DlVlIDt~ 308 (424)
T PRK05703 298 -RDCDVILIDTA 308 (424)
T ss_pred -CCCCEEEEeCC
Confidence 24578888965
No 319
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.30 E-value=0.011 Score=53.31 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45789999999999999999988754
No 320
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.013 Score=60.81 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=48.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD-LFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
..++|+|+|++|+||||++..++..+..+ +....+..++...... ..+-+....+.++.......+ .......++.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d-~~~L~~aL~~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS-AESLLDLLERL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHHHHHHhhcccCceeEecCc-HHHHHHHHHHh
Confidence 35789999999999999999998876432 2223466676544221 122222222333332221111 12233333333
Q ss_pred hcCCcEEEEEecCC
Q 007339 83 KAKEKFVLILDDMW 96 (607)
Q Consensus 83 ~~~~~~LlVlDdv~ 96 (607)
+..-++|+|..-
T Consensus 427 --~~~DLVLIDTaG 438 (559)
T PRK12727 427 --RDYKLVLIDTAG 438 (559)
T ss_pred --ccCCEEEecCCC
Confidence 345688888764
No 321
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.30 E-value=0.0026 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhcc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
|.|+|++|+|||++|..++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999888875
No 322
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.29 E-value=0.0036 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
+|.+.|++|+||||+|+.++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998775
No 323
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.29 E-value=0.017 Score=54.39 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEI 57 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 57 (607)
..++.|.|++|+||||+|.+++.....+ . ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--G-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--C-CcEEEEeCCC--CHHHHHHHH
Confidence 3489999999999999998887776322 2 3467777444 445655555
No 324
>PRK06696 uridine kinase; Validated
Probab=96.27 E-value=0.0038 Score=58.63 Aligned_cols=28 Identities=18% Similarity=0.413 Sum_probs=25.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
++..+|+|.|.+|+||||+|+.++..+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999999885
No 325
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.24 E-value=0.0026 Score=52.45 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCe
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFND 38 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~ 38 (607)
|.|+|.+|+|||++|+.++.... ..|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~---~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG---LSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-----EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcC---CceeE
Confidence 67999999999999999999975 44543
No 326
>PRK06547 hypothetical protein; Provisional
Probab=96.24 E-value=0.0059 Score=54.41 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+...+|+|.|++|+||||+|+.++....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999998754
No 327
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.23 E-value=0.013 Score=59.24 Aligned_cols=84 Identities=14% Similarity=0.071 Sum_probs=46.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD-LFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+++|.|++|+||||+|.+++..+... ..+ .+..++...... ...-+...++.++.+.... .....+.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~----~~~~~l~~~l~ 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-MGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV----KDIKKFKETLA 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-cCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeeh----HHHHHHHHHHH
Confidence 4689999999999999999999765321 222 355666544322 2222333334444432211 11233444443
Q ss_pred cCCcEEEEEec
Q 007339 84 AKEKFVLILDD 94 (607)
Q Consensus 84 ~~~~~LlVlDd 94 (607)
....-++|+|-
T Consensus 297 ~~~~D~VLIDT 307 (432)
T PRK12724 297 RDGSELILIDT 307 (432)
T ss_pred hCCCCEEEEeC
Confidence 33445688894
No 328
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.22 E-value=0.0074 Score=59.11 Aligned_cols=49 Identities=29% Similarity=0.306 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTE 56 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 56 (607)
.+++.+.|.|||||||+|.+.+-.....+ ..+.-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g---~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG---KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC---CcEEEEEeCCCCchHhhhcc
Confidence 58999999999999999999888876442 33888888777777666654
No 329
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.19 E-value=0.0041 Score=56.71 Aligned_cols=26 Identities=35% Similarity=0.282 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999999876
No 330
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.19 E-value=0.014 Score=59.38 Aligned_cols=40 Identities=30% Similarity=0.327 Sum_probs=30.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
...+|.++|++|+||||.|..++..++.+ .+ .+..|++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~--G~-kV~lV~~D~ 138 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK--GF-KPCLVCADT 138 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CC-CEEEEcCcc
Confidence 36799999999999999999999887633 22 366666543
No 331
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0048 Score=56.09 Aligned_cols=27 Identities=41% Similarity=0.592 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|.+|+||||+|+.++..+.
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 347899999999999999999999986
No 332
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.17 E-value=0.023 Score=54.52 Aligned_cols=114 Identities=13% Similarity=0.102 Sum_probs=64.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHcc-CCCC---C---cccccchHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQ-SLPE---N---EDKVRRPGR 77 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-~~~~---~---~~~~~~~~~ 77 (607)
..-++|.|+.|+|||||.+.++.... ...+.++++-......+ ...+++..... +... . .+.......
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g~~v~~~d-~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~ 185 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRGKKVGIVD-ERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEG 185 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECCEEeecch-hHHHHHHHhcccccccccccccccccchHHHH
Confidence 46789999999999999999998874 22334444211111111 11233322211 1000 0 011112333
Q ss_pred HHHHHhcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhh
Q 007339 78 LLGMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRV 126 (607)
Q Consensus 78 l~~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~ 126 (607)
+....+...+-++++|.+...+.+..+..... .|..||+||-...+
T Consensus 186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 55555556889999999877665555544432 46678998886554
No 333
>PTZ00301 uridine kinase; Provisional
Probab=96.17 E-value=0.004 Score=57.39 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||||+.+.....
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 36899999999999999999987763
No 334
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.16 E-value=0.091 Score=49.13 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=107.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCC---CCCCeEEEEEeCCC---------------------CCHHHHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKP---NKFNDVIWVTVSQP---------------------LDLFKLQTEIA 58 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~---------------------~~~~~~~~~i~ 58 (607)
++.+-..++||+|.||-|.+..+.+..-..+ -.-+...|...+.. ..-..+.++++
T Consensus 32 ~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQell 111 (351)
T KOG2035|consen 32 GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELL 111 (351)
T ss_pred CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHH
Confidence 4567889999999999998888877764210 11122233321111 11234444555
Q ss_pred HHHccCCCCCcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCc-hhhhhhcccce-
Q 007339 59 TALKQSLPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRL-YRVCRSMKCKQ- 134 (607)
Q Consensus 59 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~-~~~~~~~~~~~- 134 (607)
++......- +. .. +..=-++|+..+++.. .-..++.....-...+|+|+...+ ..+........
T Consensus 112 KevAQt~qi--e~---------~~-qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl 179 (351)
T KOG2035|consen 112 KEVAQTQQI--ET---------QG-QRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCL 179 (351)
T ss_pred HHHHhhcch--hh---------cc-ccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhhee
Confidence 554432110 00 00 1233477788887662 112222221112346677765553 22233333333
Q ss_pred -eecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHHHH-hhcCC-------c-cHHHHHHHHH
Q 007339 135 -VAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTVAA-SMSGE-------E-EIYEWQNALN 203 (607)
Q Consensus 135 -~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~a~-~l~~~-------~-~~~~~~~~l~ 203 (607)
+++...+++|....+.+.+......- ..+.+.+|+++++|. -.||-++-. .+... . ..-.|+.+++
T Consensus 180 ~iRvpaps~eeI~~vl~~v~~kE~l~l---p~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~ 256 (351)
T KOG2035|consen 180 FIRVPAPSDEEITSVLSKVLKKEGLQL---PKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQ 256 (351)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhcccC---cHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHH
Confidence 89999999999999999987775555 578999999999887 444443322 11111 1 1457988888
Q ss_pred HHHhcc
Q 007339 204 ELRGRL 209 (607)
Q Consensus 204 ~l~~~~ 209 (607)
+..+..
T Consensus 257 e~a~~i 262 (351)
T KOG2035|consen 257 EIARVI 262 (351)
T ss_pred HHHHHH
Confidence 765443
No 335
>PHA00729 NTP-binding motif containing protein
Probab=96.15 E-value=0.0052 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.+...|+|+|.+|+|||+||..+++..
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 355679999999999999999999875
No 336
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.15 E-value=0.021 Score=59.41 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCC-cccccchHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPEN-EDKVRRPGRLLGMLK 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~~ 83 (607)
..++.|.|.+|+|||||+.+++...... -..++|++.... ..++... ++.++.....- .........+.+.+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 4588999999999999999999887522 235888886553 3333322 44444321110 011123445555555
Q ss_pred cCCcEEEEEecCCCc
Q 007339 84 AKEKFVLILDDMWEA 98 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~ 98 (607)
..+.-++|+|.+...
T Consensus 154 ~~~~~lVVIDSIq~l 168 (446)
T PRK11823 154 EEKPDLVVIDSIQTM 168 (446)
T ss_pred hhCCCEEEEechhhh
Confidence 556678888888543
No 337
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.15 E-value=0.0053 Score=56.92 Aligned_cols=28 Identities=39% Similarity=0.464 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....+|+|.|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998764
No 338
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.14 E-value=0.0054 Score=53.30 Aligned_cols=116 Identities=17% Similarity=0.152 Sum_probs=61.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEe-CC--CCCHHHHHHHHHHHH-----ccCC--CCCc--cccc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTV-SQ--PLDLFKLQTEIATAL-----KQSL--PENE--DKVR 73 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~-~~--~~~~~~~~~~i~~~l-----~~~~--~~~~--~~~~ 73 (607)
..|-|++..|.||||+|...+.+... +.+. +.++.+ .. ...-..++..+- .+ +... ...+ ....
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~--~g~~-v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG--HGYR-VGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH--CCCe-EEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHH
Confidence 46888889999999999999888652 3333 444332 22 122222222220 01 0000 0001 0001
Q ss_pred ----chHHHHHHHhcCCcEEEEEecCCCc-----ccccccccCCCCCCCCcEEEEEeCchh
Q 007339 74 ----RPGRLLGMLKAKEKFVLILDDMWEA-----FPLQEIGIPEPSEENGCKLVITTRLYR 125 (607)
Q Consensus 74 ----~~~~l~~~~~~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~IliTtR~~~ 125 (607)
........+..++-=|+|||++-.. .+.+++...+.....+..||+|.|+.+
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1111222233566779999998543 233444444555556778999999754
No 339
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.11 E-value=0.0013 Score=70.09 Aligned_cols=177 Identities=21% Similarity=0.111 Sum_probs=95.9
Q ss_pred hcCCCCceEEEccCCC-Ccc--CCccccCCccCcEeecccc-cCCCCCC-----cccCCCCCCEEeccCCc-hhhh--HH
Q 007339 351 FVHMNGLKVLNLSHTD-IEV--LPSSISDLTNLRSLLLRWC-GRLKRVP-----SLAKLLALQYLDLEGTW-IEEV--LE 418 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~-~~~--l~~~~~~l~~L~~L~l~~~-~~~~~~~-----~~~~l~~L~~L~l~~~~-l~~l--~~ 418 (607)
...+++|+.+.+..+. +.. +-.....+++|+.|++++| ......+ ....+.+|+.|+++++. ++.. ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 3347788888877763 443 3334567788888888873 2222221 34556788888888875 5522 22
Q ss_pred hccCCCCCCeeeccCCc-CCcCCC-ccccCCCCCCEEEcccCcchhhhhHHH-hhcccccccEEEeeecCcccccccccc
Q 007339 419 CMEMLENLSHLYLSSLQ-LKKFPT-GILPRLRNLYKLKLSFGNEALRETVEE-AASLSDGLDYFEGCFSKLKDFNRYVKS 495 (607)
Q Consensus 419 ~~~~l~~L~~L~l~~~~-l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~-l~~l~~~L~~L~l~~~~~~~~~~~~~~ 495 (607)
....+++|+.|.+.+|. ++...- .+..++++|++|++++|....+..+.. ....+ +|+.|.+.....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~-~l~~l~~~~~~~--------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP-NLRELKLLSLNG--------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc-chhhhhhhhcCC---------
Confidence 22347788888877665 443221 223567778888888776554444322 33344 666655433221
Q ss_pred ccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccC
Q 007339 496 TDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKIC 539 (607)
Q Consensus 496 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 539 (607)
+..++.+.+.................++++++.+.|..+...
T Consensus 334 --c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 334 --CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred --CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence 111111111100000001122234567788999999888743
No 340
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.10 E-value=0.021 Score=50.80 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+++|.|+.|.|||||++.++-...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345789999999999999999988764
No 341
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.10 E-value=0.012 Score=64.78 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=46.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
..+.++|++|+|||.+|+.++.... . ..+.++++.-.... .+.+-++.+. . .........+...+...
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~---~---~~i~id~se~~~~~----~~~~LiG~~~-g-yvg~~~~g~L~~~v~~~ 556 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALG---I---ELLRFDMSEYMERH----TVSRLIGAPP-G-YVGFDQGGLLTDAVIKH 556 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---C---CcEEeechhhcccc----cHHHHcCCCC-C-cccccccchHHHHHHhC
Confidence 4688999999999999999999873 1 24455554422211 1222233221 1 10011112233344455
Q ss_pred CcEEEEEecCCCc
Q 007339 86 EKFVLILDDMWEA 98 (607)
Q Consensus 86 ~~~LlVlDdv~~~ 98 (607)
+..+++||+++..
T Consensus 557 p~sVlllDEieka 569 (758)
T PRK11034 557 PHAVLLLDEIEKA 569 (758)
T ss_pred CCcEEEeccHhhh
Confidence 6789999999876
No 342
>PRK04040 adenylate kinase; Provisional
Probab=96.09 E-value=0.005 Score=55.81 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|+|++|+||||+++.++..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999999873
No 343
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.09 E-value=0.0044 Score=51.83 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=27.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
.+-|.|+|.+|+||||+|.+++.... .-|++++.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~--------~~~i~isd 40 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG--------LEYIEISD 40 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC--------CceEehhh
Confidence 34589999999999999999997653 45666654
No 344
>PRK03839 putative kinase; Provisional
Probab=96.09 E-value=0.0047 Score=55.85 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.|.|.|++|+||||+|+.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999974
No 345
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.08 E-value=0.02 Score=58.72 Aligned_cols=41 Identities=27% Similarity=0.307 Sum_probs=30.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
...++.++|++|+||||.|..++..+..+ ..+ .+.-|++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~-~g~-kV~lV~~D~ 138 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK-QGK-KVLLVACDL 138 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-CCC-eEEEEeccc
Confidence 36789999999999999999999886422 112 366666654
No 346
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.08 E-value=0.014 Score=50.45 Aligned_cols=26 Identities=35% Similarity=0.634 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|.|||||++.++-..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46789999999999999999988764
No 347
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.08 E-value=0.0097 Score=58.10 Aligned_cols=95 Identities=19% Similarity=0.213 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----CcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 80 (607)
.+++-|+|+.|+||||||.+++...+.. -..++||++....+. ..++.++.+..+ .++..+....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~---g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ---GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc---cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHH
Confidence 4688999999999999999999887533 345999999887654 334444443221 1222222333344
Q ss_pred HH-hcCCcEEEEEecCCCcccccccccC
Q 007339 81 ML-KAKEKFVLILDDMWEAFPLQEIGIP 107 (607)
Q Consensus 81 ~~-~~~~~~LlVlDdv~~~~~~~~l~~~ 107 (607)
.+ .++.--++|+|-|.....-.++...
T Consensus 125 ~lirsg~~~lVVvDSv~al~p~~E~e~~ 152 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAALVPKAELEGE 152 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-B-HHHHTTS
T ss_pred HHhhcccccEEEEecCcccCCHHHHhhc
Confidence 43 3566679999999776444444333
No 348
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.07 E-value=0.022 Score=53.15 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=28.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
+|+|.|++|+||||+|+.++..+.... .-..+..++...-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~-~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWP-DHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcC-CCCcEEEEecCcc
Confidence 589999999999999999998875210 1123556655543
No 349
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.06 E-value=0.03 Score=62.12 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
...|.|+|..|+|||.+|+.+...-.. .-...+.++|...
T Consensus 399 ~~pVLI~GE~GTGK~~lA~~ih~~s~r---~~~~~v~i~c~~~ 438 (686)
T PRK15429 399 DSTVLILGETGTGKELIARAIHNLSGR---NNRRMVKMNCAAM 438 (686)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCC---CCCCeEEEecccC
Confidence 346899999999999999999776431 1223667777654
No 350
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.06 E-value=0.0092 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHhhc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
|+|.|++|+||||+|+.++...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999886
No 351
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.05 E-value=0.0085 Score=57.53 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
+.|.|+|.+|+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998864
No 352
>PRK15453 phosphoribulokinase; Provisional
Probab=96.03 E-value=0.031 Score=53.21 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=26.6
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 1 MDDKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 1 ~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
|.....+|+|.|.+|+||||+|+.++..+.
T Consensus 1 Ms~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 1 MSAKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456778999999999999999999998774
No 353
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.03 E-value=0.026 Score=58.51 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=39.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHHccCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-LDLFKLQTEIATALKQSL 65 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 65 (607)
..+++++.|+.|+||||.+..++..+..+ .....+..+..... ....+-+....+.++.+.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~-~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMR-HGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHh-cCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 34799999999999999999999887432 22224666765542 123333444455555443
No 354
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.011 Score=59.99 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=44.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKE 86 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (607)
=|.++|++|.|||-||++++-...+. ||......++ ++.-..+ ...++.+.+.....-
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA~VP-------FF~~sGSEFd------Em~VGvG---------ArRVRdLF~aAk~~A 396 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEAGVP-------FFYASGSEFD------EMFVGVG---------ARRVRDLFAAAKARA 396 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhcccCCC-------eEeccccchh------hhhhccc---------HHHHHHHHHHHHhcC
Confidence 37899999999999999999887643 1222222221 1211111 123444555555678
Q ss_pred cEEEEEecCCCc
Q 007339 87 KFVLILDDMWEA 98 (607)
Q Consensus 87 ~~LlVlDdv~~~ 98 (607)
+++|+||.++..
T Consensus 397 PcIIFIDEiDav 408 (752)
T KOG0734|consen 397 PCIIFIDEIDAV 408 (752)
T ss_pred CeEEEEechhhh
Confidence 999999998755
No 355
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.02 E-value=0.0084 Score=58.89 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=34.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQT 55 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 55 (607)
|+|.+.|.|||||||+|...+-....++ ..+.-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G---~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG---KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT---S-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC---CCeeEeecCCCccHHHHhC
Confidence 7899999999999999999988886542 2366666666555444443
No 356
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.02 E-value=0.005 Score=54.80 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=32.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 49 (607)
..++.+.|+.|+|||.+|+.++..+.. ......+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~--~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV--GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc--CCccchHHHhhhcccc
Confidence 457889999999999999999999852 2344577777766444
No 357
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.01 E-value=0.0079 Score=51.53 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=29.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
++|.|+|+.|+|||||++.+++.... ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~--~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR--RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH--cCCceEEEEEccC
Confidence 58999999999999999999999864 4555555666655
No 358
>PLN02200 adenylate kinase family protein
Probab=96.01 E-value=0.017 Score=54.45 Aligned_cols=27 Identities=26% Similarity=0.121 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|++|+||||+|+.++..+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998763
No 359
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.01 E-value=0.017 Score=54.76 Aligned_cols=47 Identities=17% Similarity=0.094 Sum_probs=34.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTE 56 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 56 (607)
..++.|+|.+|+|||++|.+++..... .-..++|++..+. ..++.+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCC--HHHHHHH
Confidence 467899999999999999999776432 2335999998754 3444444
No 360
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.99 E-value=0.049 Score=48.34 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=47.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC-
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK- 85 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~- 85 (607)
++.|.|.+|+|||++|.+++.... ..++++.-....+. +..+.|.+.-... ...-...+....+.+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~------~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELG------GPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC------CCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcC
Confidence 368999999999999999987622 24777766665543 3444444432222 11111222333444444221
Q ss_pred CcEEEEEecCC
Q 007339 86 EKFVLILDDMW 96 (607)
Q Consensus 86 ~~~LlVlDdv~ 96 (607)
+.-.+++|.+.
T Consensus 73 ~~~~VLIDclt 83 (169)
T cd00544 73 PGDVVLIDCLT 83 (169)
T ss_pred CCCEEEEEcHh
Confidence 34479999864
No 361
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.99 E-value=0.017 Score=58.97 Aligned_cols=90 Identities=14% Similarity=0.210 Sum_probs=50.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccC-----CCCCccccc------
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQS-----LPENEDKVR------ 73 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~------ 73 (607)
...++|.|+.|+|||||++.++...+ ...+++++.-....++.++........... .....+...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~----pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA----FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC----CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 35789999999999999998876542 122344443333445555544443333110 111111110
Q ss_pred chHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 74 RPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 74 ~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
..-.+.+.+. +++++|+++|++-..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 1111223332 689999999998654
No 362
>PRK07667 uridine kinase; Provisional
Probab=95.98 E-value=0.007 Score=55.32 Aligned_cols=28 Identities=21% Similarity=0.480 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+..+|+|.|++|+||||+|..++....
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4557899999999999999999999875
No 363
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.97 E-value=0.039 Score=51.80 Aligned_cols=127 Identities=14% Similarity=0.117 Sum_probs=69.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeC--C--CCCHHHHHHHHHHHHccCC------CCCccccc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVS--Q--PLDLFKLQTEIATALKQSL------PENEDKVR 73 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~--~--~~~~~~~~~~i~~~l~~~~------~~~~~~~~ 73 (607)
...+++|+|.+|+||||+++.+..-.+ -....|.|-.-. . .....+-..+++...+.+. +.+-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346789999999999999999998874 223233333211 1 1123334455555555332 11112222
Q ss_pred chHHHHHHHhcCCcEEEEEecCCCccc------ccccccCCCCCCCCcEEEEEeCchhhhhhcccce
Q 007339 74 RPGRLLGMLKAKEKFVLILDDMWEAFP------LQEIGIPEPSEENGCKLVITTRLYRVCRSMKCKQ 134 (607)
Q Consensus 74 ~~~~l~~~~~~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~~~~ 134 (607)
...-.+++.+.-++-++|.|.....-+ +-.+...+. ...+...++.|-+-.+...+....
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdri 180 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDRI 180 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcccE
Confidence 223334444467889999998654422 112222222 223556777777777776654433
No 364
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.96 E-value=0.057 Score=51.91 Aligned_cols=147 Identities=20% Similarity=0.226 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHcc----CCCCCcccccchHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQ----SLPENEDKVRRPGRL 78 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~l 78 (607)
....+.|.||.|.|||.|......+.+ ..-+...-|...... +-.-.+..|.+++.. ......+..+....+
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~l 124 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKL 124 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHH
Confidence 345688999999999999988888833 222234444444322 122344555555533 222223444455556
Q ss_pred HHHHhc-----CCcEEEEEecCCCccc------ccccc-cCCCCCCCCcEEEEEeCch-------hhhhhcccce-eecc
Q 007339 79 LGMLKA-----KEKFVLILDDMWEAFP------LQEIG-IPEPSEENGCKLVITTRLY-------RVCRSMKCKQ-VAVE 138 (607)
Q Consensus 79 ~~~~~~-----~~~~LlVlDdv~~~~~------~~~l~-~~~~~~~~~~~IliTtR~~-------~~~~~~~~~~-~~l~ 138 (607)
...+.. +-++++|+|.+|-... +-.+. ..-....+-+.|-+|||-. ++-.+..... +-++
T Consensus 125 L~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~ 204 (408)
T KOG2228|consen 125 LEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLP 204 (408)
T ss_pred HHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccC
Confidence 665542 3568999988864421 11111 1111235677888999943 2233334443 3345
Q ss_pred cCCHHHHHHHhHhhh
Q 007339 139 LLSKQEAFNLFIDGV 153 (607)
Q Consensus 139 ~L~~~ea~~L~~~~~ 153 (607)
.+.-++-++++++..
T Consensus 205 ~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 205 SLPLGDYVDLYRKLL 219 (408)
T ss_pred CCChHHHHHHHHHHh
Confidence 566666666666554
No 365
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.035 Score=54.92 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=59.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCC-cccccchHHHHHHHhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPEN-EDKVRRPGRLLGMLKA 84 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~~~ 84 (607)
.+|.|-|-+|+|||||..+++.++..+. .+.||+-.+. ..++ +.-++.++.+...- --.......+.+.+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 5789999999999999999999987432 5888875543 2222 22345555432111 1223456677777778
Q ss_pred CCcEEEEEecCCCc
Q 007339 85 KEKFVLILDDMWEA 98 (607)
Q Consensus 85 ~~~~LlVlDdv~~~ 98 (607)
.++-++|+|-++.+
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 89999999999765
No 366
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.96 E-value=0.0063 Score=54.70 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....|.|.|++|+||||+|+.++..+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999999974
No 367
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.095 Score=50.55 Aligned_cols=117 Identities=5% Similarity=-0.036 Sum_probs=60.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC-----------CCCCCeEEEEEeCCC---CCHHHHHHHHHHHHccCCCCCcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK-----------PNKFNDVIWVTVSQP---LDLFKLQTEIATALKQSLPENED 70 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~-----------~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~~~~~~~ 70 (607)
.+...++|+.|+||+++|..++...-.. +.|.| +.|+..... ..++++ +.+.+.+....
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~~~~I~idqi-R~l~~~~~~~p----- 91 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGKGRLHSIETP-RAIKKQIWIHP----- 91 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCCCCcCcHHHH-HHHHHHHhhCc-----
Confidence 4567899999999999999998877421 11222 333322111 112222 12222222110
Q ss_pred cccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcE-EEEEeCchhhhhhcc--cceeecccC
Q 007339 71 KVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCK-LVITTRLYRVCRSMK--CKQVAVELL 140 (607)
Q Consensus 71 ~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~-IliTtR~~~~~~~~~--~~~~~l~~L 140 (607)
..++..++|+|+++.+. ....+...+-.-..++. |++|+....+..... +..+.+.++
T Consensus 92 ------------~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 92 ------------YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred ------------cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 03677899999999883 34444433332223444 455555455544332 333666554
No 368
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.95 E-value=0.0063 Score=54.70 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|.+.|++|+||||+|+.++....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 46899999999999999999998864
No 369
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.95 E-value=0.00062 Score=62.98 Aligned_cols=84 Identities=19% Similarity=0.112 Sum_probs=71.9
Q ss_pred CCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccE
Q 007339 399 KLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDY 478 (607)
Q Consensus 399 ~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~ 478 (607)
.+.+.+.|+.-||.++.+. .+.+|+.|+.|.|+-|.++.+.+ +..|++|+.|+|..|.+.....+..+.++| +|+.
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlp-sLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLP-SLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCc-hhhh
Confidence 3556677888888888663 36789999999999999999876 689999999999999888888889999999 9999
Q ss_pred EEeeecCc
Q 007339 479 FEGCFSKL 486 (607)
Q Consensus 479 L~l~~~~~ 486 (607)
|-|..|.-
T Consensus 93 LWL~ENPC 100 (388)
T KOG2123|consen 93 LWLDENPC 100 (388)
T ss_pred HhhccCCc
Confidence 99977654
No 370
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.94 E-value=0.0051 Score=55.83 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|.|.|++|+||||+|+.++..+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999874
No 371
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.94 E-value=0.034 Score=51.36 Aligned_cols=88 Identities=17% Similarity=0.333 Sum_probs=52.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHHccCC------CCCccccc-----
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-LDLFKLQTEIATALKQSL------PENEDKVR----- 73 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~----- 73 (607)
..++|.|.+|+|||+|+.++++... -+.++++-+.+. .+..++.+++...-..+. ........
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~-----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD-----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc-----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 5689999999999999999999964 345677777754 345555555533210000 00111100
Q ss_pred -chHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 74 -RPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 74 -~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
....+.+.+. +++++|+++||+...
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsltr~ 117 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSLTRW 117 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETHHHH
T ss_pred ccchhhhHHHhhcCCceeehhhhhHHH
Confidence 1111222222 689999999998543
No 372
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.93 E-value=0.011 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+|.|.|+.|+||||++..++....
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999999887764
No 373
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.065 Score=49.08 Aligned_cols=128 Identities=12% Similarity=0.148 Sum_probs=67.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
+++=+.++|++|.|||-||+.+++... ..|+.++.. ++++..-... ...+..+.--.+
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~--------c~firvsgs--------elvqk~igeg------srmvrelfvmar 237 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHTD--------CTFIRVSGS--------ELVQKYIGEG------SRMVRELFVMAR 237 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhcc--------eEEEEechH--------HHHHHHhhhh------HHHHHHHHHHHH
Confidence 345578999999999999999998864 556776653 2222221110 112222222222
Q ss_pred cCCcEEEEEecCCCccc------------c----cccccCCCC--CCCCcEEEEEeCchhhhhh----cccce--eeccc
Q 007339 84 AKEKFVLILDDMWEAFP------------L----QEIGIPEPS--EENGCKLVITTRLYRVCRS----MKCKQ--VAVEL 139 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~------------~----~~l~~~~~~--~~~~~~IliTtR~~~~~~~----~~~~~--~~l~~ 139 (607)
..-+-++++|.++..-. + -++...+.. ...+-+||..|....+... .+.-. ++.++
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 45567888888765411 0 011122221 2345677777764444322 11111 56666
Q ss_pred CCHHHHHHHhHhhh
Q 007339 140 LSKQEAFNLFIDGV 153 (607)
Q Consensus 140 L~~~ea~~L~~~~~ 153 (607)
=+++.-.++++-+.
T Consensus 318 p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 318 PNEEARLDILKIHS 331 (404)
T ss_pred CCHHHHHHHHHHhh
Confidence 56655566665444
No 374
>PRK01184 hypothetical protein; Provisional
Probab=95.93 E-value=0.021 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.578 Sum_probs=19.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.+|+|+|++|+||||+|+ ++..+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~ 24 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREM 24 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHc
Confidence 479999999999999987 55543
No 375
>PRK00625 shikimate kinase; Provisional
Probab=95.93 E-value=0.0061 Score=54.32 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.|.|.|++|+||||+++.++....
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
No 376
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.92 E-value=0.0072 Score=55.35 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=54.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC---------CCccccc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP---------ENEDKVR 73 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~ 73 (607)
++.++..|.|++|+|||++++.+...+... . ..++++. .+..... .+.+..+.... .......
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~--g-~~v~~~a-pT~~Aa~----~L~~~~~~~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAA--G-KRVIGLA-PTNKAAK----ELREKTGIEAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHT--T---EEEEE-SSHHHHH----HHHHHHTS-EEEHHHHTTEECCEECCS
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhC--C-CeEEEEC-CcHHHHH----HHHHhhCcchhhHHHHHhcCCcccccc
Confidence 455789999999999999999998887643 2 2244443 2221222 23333321100 0000000
Q ss_pred chHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchhh
Q 007339 74 RPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYRV 126 (607)
Q Consensus 74 ~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~~ 126 (607)
... ..+.-++|+|++.-.. .+..+..... ..++++|+.--..+.
T Consensus 88 ~~~-------~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 88 RPE-------LPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp SCC--------TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred ccc-------CCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 000 1334599999997663 3444444443 246788877765444
No 377
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.91 E-value=0.0063 Score=52.63 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=19.1
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 007339 7 KIGVWGMGGIGKTTIMSHIN 26 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~ 26 (607)
.|+|+|.+|+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 378
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.91 E-value=0.011 Score=53.25 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=25.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+...+|+|.|++|+||||+|+.++....
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999999875
No 379
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.91 E-value=0.0026 Score=34.84 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=9.8
Q ss_pred CCEEeccCCchhhhHHhcc
Q 007339 403 LQYLDLEGTWIEEVLECME 421 (607)
Q Consensus 403 L~~L~l~~~~l~~l~~~~~ 421 (607)
|++|++++|+++.+|+.++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554433
No 380
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.91 E-value=0.0091 Score=52.92 Aligned_cols=116 Identities=15% Similarity=0.094 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL--DLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
..+++|.|+.|.|||||.+.++-... ...+.++++-.... +..+. ..+.++.-.. -.........+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~q-LS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK----PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQ-LSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEECCcCCHHHH---HhcCeEEEEe-cCHHHHHHHHHHHHH
Confidence 45789999999999999999987753 23445555322111 11111 1111111000 001111122233333
Q ss_pred hcCCcEEEEEecCCCccc---ccccccCCCCC-CCCcEEEEEeCchhhhhh
Q 007339 83 KAKEKFVLILDDMWEAFP---LQEIGIPEPSE-ENGCKLVITTRLYRVCRS 129 (607)
Q Consensus 83 ~~~~~~LlVlDdv~~~~~---~~~l~~~~~~~-~~~~~IliTtR~~~~~~~ 129 (607)
-.++-++++|+.-..-+ .+.+...+... ..+..||++|.+......
T Consensus 98 -~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 98 -ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred -hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 45678888898654322 22222222211 235568888887664443
No 381
>PRK14529 adenylate kinase; Provisional
Probab=95.90 E-value=0.023 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEcCCCChHHHHHHHHHhhcc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
|.|.|++|+||||+|+.++..+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999999885
No 382
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.89 E-value=0.048 Score=53.01 Aligned_cols=52 Identities=17% Similarity=0.156 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATA 60 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 60 (607)
..++.|.|++|+|||+++.+++..... +.-..++|+++... ..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~--~~g~~vl~iS~E~~--~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT--QHGVRVGTISLEEP--VVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH--hcCceEEEEEcccC--HHHHHHHHHHH
Confidence 357889999999999999999888642 21235899988763 44555555443
No 383
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.89 E-value=0.025 Score=58.78 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCC-cccccchHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPEN-EDKVRRPGRLLGMLK 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~~~ 83 (607)
..++.|.|.+|+|||||+.+++...... -..++|++.... ..++.. -+..++.....- --.......+.+.+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 4578999999999999999998876532 134888886643 333322 123333221100 001122345555554
Q ss_pred cCCcEEEEEecCCCc
Q 007339 84 AKEKFVLILDDMWEA 98 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~ 98 (607)
..+.-++|+|.+...
T Consensus 168 ~~~~~~vVIDSIq~l 182 (454)
T TIGR00416 168 EENPQACVIDSIQTL 182 (454)
T ss_pred hcCCcEEEEecchhh
Confidence 556678899988653
No 384
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.88 E-value=0.023 Score=49.39 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|.|.|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999874
No 385
>PF13245 AAA_19: Part of AAA domain
Probab=95.88 E-value=0.015 Score=43.77 Aligned_cols=42 Identities=21% Similarity=0.208 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCChHHHHHHHH-HhhcccCCCCCCeEEEEEeC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHI-NNKLQEKPNKFNDVIWVTVS 45 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~-~~~~~~~~~~f~~~~wv~~~ 45 (607)
+.+++.|.|++|.|||+++.+. .+........-+.+..+...
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4567888999999999555544 44442111223346666433
No 386
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.85 E-value=0.031 Score=50.08 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+++|.|+.|+|||||++.++-...
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 346899999999999999999987753
No 387
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.85 E-value=0.0051 Score=54.52 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhccc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
|.|+|.+|+||||+++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 789999999999999999999854
No 388
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.024 Score=61.57 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=50.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
.+.+....||.|||||.||++++..+- ..-+..+-++++.- .--+.+-+-+|.+. +.-.-+....+-...+
T Consensus 520 PigsFlF~GPTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy----~EkHsVSrLIGaPP--GYVGyeeGG~LTEaVR 590 (786)
T COG0542 520 PIGSFLFLGPTGVGKTELAKALAEALF---GDEQALIRIDMSEY----MEKHSVSRLIGAPP--GYVGYEEGGQLTEAVR 590 (786)
T ss_pred CceEEEeeCCCcccHHHHHHHHHHHhc---CCCccceeechHHH----HHHHHHHHHhCCCC--CCceeccccchhHhhh
Confidence 345677899999999999999999983 22244666666552 12233444444431 1111111333344443
Q ss_pred cCCcEEEEEecCCCc
Q 007339 84 AKEKFVLILDDMWEA 98 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~ 98 (607)
+++-.++.||.++.-
T Consensus 591 r~PySViLlDEIEKA 605 (786)
T COG0542 591 RKPYSVILLDEIEKA 605 (786)
T ss_pred cCCCeEEEechhhhc
Confidence 445569999999754
No 389
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.82 E-value=0.015 Score=49.12 Aligned_cols=102 Identities=18% Similarity=0.261 Sum_probs=58.6
Q ss_pred ccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hcc
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CME 421 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~ 421 (607)
.+++..|..+++|+.+.+..+ +..++. .|..++.|+.+.+.. ....... .+..+.+|+.+++..+ +..++. .+.
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~ 101 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFS 101 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTT
T ss_pred EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhc
Confidence 467778999999999999885 776654 578888899999975 3222223 6778999999999775 666665 466
Q ss_pred CCCCCCeeeccCCcCCcCCCccccCCCCCC
Q 007339 422 MLENLSHLYLSSLQLKKFPTGILPRLRNLY 451 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 451 (607)
++ +|+.+.+.. .+..++...|.++++|+
T Consensus 102 ~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 102 NC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T--T--EEE-TT-B-SS----GGG------
T ss_pred CC-CceEEEECC-CccEECCccccccccCC
Confidence 66 999999876 67777777788887764
No 390
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.82 E-value=0.053 Score=48.22 Aligned_cols=83 Identities=16% Similarity=0.125 Sum_probs=45.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCc--ccccchHHHHHHHhc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENE--DKVRRPGRLLGMLKA 84 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~~~~ 84 (607)
+|.|.|.+|+|||++|..++..... .++++.-... ...+..+.|............ .....+..+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~------~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~- 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL------QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA- 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC------CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc-
Confidence 6899999999999999999987531 1445544333 234455555544433211111 11112333333321
Q ss_pred CCcEEEEEecCCC
Q 007339 85 KEKFVLILDDMWE 97 (607)
Q Consensus 85 ~~~~LlVlDdv~~ 97 (607)
.+.-++++|.+..
T Consensus 75 ~~~~~VlID~Lt~ 87 (170)
T PRK05800 75 APGRCVLVDCLTT 87 (170)
T ss_pred CCCCEEEehhHHH
Confidence 2234788998643
No 391
>PRK04328 hypothetical protein; Provisional
Probab=95.81 E-value=0.023 Score=54.31 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=31.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
..++.|.|++|+|||+||.+++...-.+ -+.++|++....
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEEeeCC
Confidence 4678999999999999999988775322 344888887663
No 392
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.81 E-value=0.035 Score=54.83 Aligned_cols=50 Identities=24% Similarity=0.312 Sum_probs=34.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKL 53 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 53 (607)
++..+|+|.|++|+|||||+..+...++.. +.--.++=++.+...+-..+
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~-g~~v~vi~~Dp~s~~~~gal 103 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQ-GHKVAVLAVDPSSTRTGGSI 103 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeCCCccccchhh
Confidence 456799999999999999999998888643 22223444555555443333
No 393
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.81 E-value=0.0065 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999986
No 394
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.031 Score=49.96 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|.|||||.+.++-...
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45789999999999999999988764
No 395
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.80 E-value=0.026 Score=56.25 Aligned_cols=39 Identities=13% Similarity=0.159 Sum_probs=27.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
..|.|+|..|+||+++|+.+...-... -...+-|+|...
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~---~~pfv~vnc~~~ 61 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRW---QGPLVKLNCAAL 61 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCcc---CCCeEEEeCCCC
Confidence 458999999999999999887654321 123556677653
No 396
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.80 E-value=0.066 Score=50.96 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=55.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccc-CCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCC------CCCcccc----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQE-KPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSL------PENEDKV---- 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~---- 72 (607)
...++|.|-.|+|||+|+..+++.... +...-+.++++-+.+.. +..++.+.+...=.... .......
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 346799999999999999999877531 11224568888877643 45555555544311100 0001100
Q ss_pred --cchHHHHHHHh-c-CCcEEEEEecCCCc
Q 007339 73 --RRPGRLLGMLK-A-KEKFVLILDDMWEA 98 (607)
Q Consensus 73 --~~~~~l~~~~~-~-~~~~LlVlDdv~~~ 98 (607)
-..-.+.+.+. + ++++|+++||+-..
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 01222344443 3 79999999998654
No 397
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.79 E-value=0.0092 Score=58.16 Aligned_cols=41 Identities=34% Similarity=0.522 Sum_probs=32.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 49 (607)
|.|+|+|-||+||||+|..++.....+ .+ .+.-|++....+
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~--G~-~VlliD~D~q~~ 41 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM--GK-KVMIVGCDPKAD 41 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC--CC-eEEEEeCCCCCC
Confidence 578999999999999999999998754 22 377777665544
No 398
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.77 E-value=0.047 Score=64.40 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhccc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
.+=|.++|++|+|||.||+++|.+..+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 345889999999999999999999753
No 399
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.76 E-value=0.0093 Score=55.24 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=25.4
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
-....+|+|.|++|+||||||+.++..+.
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45678999999999999999999998763
No 400
>PRK13236 nitrogenase reductase; Reviewed
Probab=95.76 E-value=0.014 Score=57.43 Aligned_cols=41 Identities=27% Similarity=0.491 Sum_probs=32.0
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeC
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVS 45 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 45 (607)
+++.|+|++.|-|||||||+|..++.-+..+ .+ .+.-+++.
T Consensus 3 ~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~--G~-rVLliD~D 43 (296)
T PRK13236 3 DENIRQIAFYGKGGIGKSTTSQNTLAAMAEM--GQ-RILIVGCD 43 (296)
T ss_pred CcCceEEEEECCCcCCHHHHHHHHHHHHHHC--CC-cEEEEEcc
Confidence 5678999999999999999999999988754 22 25555543
No 401
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.74 E-value=0.038 Score=49.49 Aligned_cols=26 Identities=35% Similarity=0.450 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|.|||||++.++-...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999988753
No 402
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.74 E-value=0.046 Score=58.21 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=29.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL 48 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (607)
..|.|+|..|+|||++|+.+.+.-.. .-...+.|+|....
T Consensus 211 ~pVlI~Ge~GtGK~~~A~~ih~~s~r---~~~p~v~v~c~~~~ 250 (509)
T PRK05022 211 LNVLILGETGVGKELVARAIHAASPR---ADKPLVYLNCAALP 250 (509)
T ss_pred CcEEEECCCCccHHHHHHHHHHhCCc---CCCCeEEEEcccCC
Confidence 45789999999999999999877532 22236777777654
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.72 E-value=0.032 Score=55.02 Aligned_cols=40 Identities=28% Similarity=0.391 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
+..+|++.|++|+||||++..++..+... . ..+..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g-~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--G-KKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--C-CeEEEEecCc
Confidence 56899999999999999999999988632 2 2366666543
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.058 Score=55.04 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=37.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSL 65 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~ 65 (607)
...+|++.|+.|+||||++..++..+... ...+.+..+...... ...+-+....+.++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~-~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~ 251 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIR-HGADKVALLTTDSYRIGGHEQLRIYGKLLGVSV 251 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecCCcchhHHHHHHHHHHHcCCce
Confidence 45799999999999999999998764221 223345555544322 22222444555555544
No 405
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.71 E-value=0.0089 Score=53.99 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
++++|.|++|+||||+++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999988864
No 406
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.70 E-value=0.0076 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998875
No 407
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.70 E-value=0.026 Score=56.29 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=27.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
..|.|+|..|+||+++|+.+...-. + .-...+.|+|...
T Consensus 30 ~pVlI~GE~GtGK~~lA~~iH~~s~-r--~~~pfv~v~c~~~ 68 (326)
T PRK11608 30 KPVLIIGERGTGKELIASRLHYLSS-R--WQGPFISLNCAAL 68 (326)
T ss_pred CCEEEECCCCCcHHHHHHHHHHhCC-c--cCCCeEEEeCCCC
Confidence 4588999999999999998875432 1 1223566777764
No 408
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.68 E-value=0.0077 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|+|.|++|+||||+|+.++..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998864
No 409
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.67 E-value=0.0075 Score=55.50 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
+|+|.|++|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 410
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.092 Score=56.76 Aligned_cols=149 Identities=13% Similarity=0.122 Sum_probs=85.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCCc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKEK 87 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (607)
+.++||+|+|||-||++++-.-.+ =|++++.. +.++.+... ....+..+....+...+
T Consensus 347 vLL~GPPGTGKTLLAKAiAGEAgV--------PF~svSGS--------EFvE~~~g~------~asrvr~lf~~ar~~aP 404 (774)
T KOG0731|consen 347 VLLVGPPGTGKTLLAKAIAGEAGV--------PFFSVSGS--------EFVEMFVGV------GASRVRDLFPLARKNAP 404 (774)
T ss_pred eEEECCCCCcHHHHHHHHhcccCC--------ceeeechH--------HHHHHhccc------chHHHHHHHHHhhccCC
Confidence 789999999999999999998753 24444432 122222211 13345666666667788
Q ss_pred EEEEEecCCCccc-----------------ccccccCCCCCCC--CcEEEEEeCchhhhhh----cccce--eecccCCH
Q 007339 88 FVLILDDMWEAFP-----------------LQEIGIPEPSEEN--GCKLVITTRLYRVCRS----MKCKQ--VAVELLSK 142 (607)
Q Consensus 88 ~LlVlDdv~~~~~-----------------~~~l~~~~~~~~~--~~~IliTtR~~~~~~~----~~~~~--~~l~~L~~ 142 (607)
+++.+|+++...- +.++......+.. +-.++-+|+...+... .+... +.++.=+.
T Consensus 405 ~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~ 484 (774)
T KOG0731|consen 405 SIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDV 484 (774)
T ss_pred eEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCch
Confidence 9999999875522 1122222221222 2223334443333221 12111 56666667
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
.+..++|.-++....... +..+..+ ++...-|++=|
T Consensus 485 ~~r~~i~~~h~~~~~~~~--e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 485 KGRASILKVHLRKKKLDD--EDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred hhhHHHHHHHhhccCCCc--chhhHHH-HHhcCCCCcHH
Confidence 778888988886653332 1344444 99999998855
No 411
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.67 E-value=0.01 Score=53.50 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|+|.|.+|+||||+|+.++....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999875
No 412
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.64 E-value=0.052 Score=51.59 Aligned_cols=55 Identities=15% Similarity=0.287 Sum_probs=34.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCC---------CCCCeEEEEEeCCCCC-HHHHHHHHHHHH
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKP---------NKFNDVIWVTVSQPLD-LFKLQTEIATAL 61 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~---------~~f~~~~wv~~~~~~~-~~~~~~~i~~~l 61 (607)
+-.|.|++|+|||+||.+++.....-. ..-..+++++...+.+ +.+-+..+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 567899999999999999987653211 1122477777665432 333334444433
No 413
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.64 E-value=0.026 Score=59.63 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC---------------Cc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE---------------NE 69 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------------~~ 69 (607)
..++.|.|++|+|||||+.++++....+ =+.++++...+. ..++...+ +.++.+... ..
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s~eEs--~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACAN---KERAILFAYEES--RAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCC--HHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 3578999999999999999999987532 234788877663 44554443 344432111 01
Q ss_pred ccccchHHHHHHHhcCCcEEEEEecCCCc
Q 007339 70 DKVRRPGRLLGMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~LlVlDdv~~~ 98 (607)
...+....+.+.....+.-.+|+|.+...
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 11234455555554556678889987643
No 414
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.63 E-value=0.028 Score=61.53 Aligned_cols=86 Identities=15% Similarity=0.148 Sum_probs=55.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC-----CcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE-----NEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 79 (607)
.+++-|+|++|+||||||.+++...... -..++|++....++. ..++.++.+... ..........+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~---G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAA---GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4678899999999999999987765432 234899998877663 356666654321 111122222233
Q ss_pred HHHhcCCcEEEEEecCCCc
Q 007339 80 GMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~ 98 (607)
....++.--|+|+|.+...
T Consensus 132 ~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHhhcCCCeEEEEcchhhh
Confidence 3334567889999998744
No 415
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.62 E-value=0.011 Score=58.49 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
...++++|+|++|+||||||+.++..+..
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35688999999999999999999998853
No 416
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.60 E-value=0.048 Score=60.59 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.2
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhh
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
+.+.++++|+|+.|.||||+.+.+.-.
T Consensus 319 ~~~~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 319 KFEKRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred CCCceEEEEECCCCCCchHHHHHHHHH
Confidence 345589999999999999999998765
No 417
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.012 Score=55.65 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+..++|||++|.|||-+|+.++..+.
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg 191 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMG 191 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcC
Confidence 45689999999999999999999986
No 418
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.58 E-value=0.018 Score=57.84 Aligned_cols=102 Identities=21% Similarity=0.237 Sum_probs=56.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK---PNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
++=+-|||..|.|||.|+-.+++....+ ..|| .+...++-+.+.... ...+.+..+.+.
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF--------------h~Fm~~vh~~l~~~~----~~~~~l~~va~~ 123 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF--------------HEFMLDVHSRLHQLR----GQDDPLPQVADE 123 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccccc--------------cHHHHHHHHHHHHHh----CCCccHHHHHHH
Confidence 4557899999999999999999988652 1222 233333333332211 222234455555
Q ss_pred HhcCCcEEEEEecCC--Cccc---ccccccCCCCCCCCcEEEEEeCchhhhh
Q 007339 82 LKAKEKFVLILDDMW--EAFP---LQEIGIPEPSEENGCKLVITTRLYRVCR 128 (607)
Q Consensus 82 ~~~~~~~LlVlDdv~--~~~~---~~~l~~~~~~~~~~~~IliTtR~~~~~~ 128 (607)
+ .++..||.||.+. +..+ +..+...+. ..|. |+|+|-+.....
T Consensus 124 l-~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~~P~~ 171 (362)
T PF03969_consen 124 L-AKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNRPPED 171 (362)
T ss_pred H-HhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCCChHH
Confidence 5 4567799999864 3322 222222222 3565 555555544433
No 419
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.58 E-value=0.013 Score=53.04 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=24.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...++|.|.|++|+|||||++.+....
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 356889999999999999999998875
No 420
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.57 E-value=0.031 Score=49.22 Aligned_cols=118 Identities=15% Similarity=0.036 Sum_probs=63.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeE--EEEEeCCCCCHHHHHHHHHHHH-----ccC--CCCCc--ccc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDV--IWVTVSQPLDLFKLQTEIATAL-----KQS--LPENE--DKV 72 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~--~wv~~~~~~~~~~~~~~i~~~l-----~~~--~~~~~--~~~ 72 (607)
....|-|++..|.||||.|..++.+... +.+... -|+.-.....-...+..+ .+ +.. ....+ ...
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~~--~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~ 79 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRALG--HGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADT 79 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHH--CCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHH
Confidence 3467888888999999999999988753 344332 233322112222233222 11 110 00101 001
Q ss_pred c----chHHHHHHHhcCCcEEEEEecCCCc-----ccccccccCCCCCCCCcEEEEEeCchh
Q 007339 73 R----RPGRLLGMLKAKEKFVLILDDMWEA-----FPLQEIGIPEPSEENGCKLVITTRLYR 125 (607)
Q Consensus 73 ~----~~~~l~~~~~~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~IliTtR~~~ 125 (607)
. ......+.+.+++-=|+|||.+-.. -+.+++...+........||+|.|+.+
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 1 1222233333566779999998532 233344444444556778999999653
No 421
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.57 E-value=0.051 Score=55.34 Aligned_cols=89 Identities=11% Similarity=0.238 Sum_probs=50.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCC------CCCccccc----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSL------PENEDKVR---- 73 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 73 (607)
...++|.|..|+|||||++.++.... .+.++..-+.+.. ...++.+.++..-+... ..+.+...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~-----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTT-----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCC-----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 45689999999999999999986542 3455556565532 34445555433311110 00111110
Q ss_pred --chHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 74 --RPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 74 --~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
..-.+.+.+. +++++|+++|++-..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 1111233332 689999999998655
No 422
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.55 E-value=0.09 Score=50.59 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=26.2
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+.++.+|.|.|.+|+|||||+..++...+
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35788999999999999999999999875
No 423
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.54 E-value=0.013 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+|.|.|++|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999985
No 424
>COG3910 Predicted ATPase [General function prediction only]
Probab=95.54 E-value=0.093 Score=46.16 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
=..++-+|+|-.|+|||||...++-..
T Consensus 35 F~apIT~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 35 FRAPITFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred ccCceEEEEcCCCccHHHHHHHHHhhc
Confidence 356788999999999999999987655
No 425
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=95.54 E-value=0.029 Score=54.57 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=80.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHHccCC--------CCCccc----c
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-LDLFKLQTEIATALKQSL--------PENEDK----V 72 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~--------~~~~~~----~ 72 (607)
.-|++.|-+|||||.+.+++.++..+ .+-...+|..+.+. ....+++.++.+.=-.+. .+.+.. .
T Consensus 148 gKiGLFGGAGVGKTVl~~ELI~Nia~--~h~g~SVFaGvGERtREGndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVa 225 (468)
T COG0055 148 GKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVA 225 (468)
T ss_pred ceeeeeccCCccceeeHHHHHHHHHH--HcCCeEEEEeccccccchHHHHHHHHhcCCCCceeEEEeecCCCCcceeeeh
Confidence 34799999999999999999999864 34445888888654 456788887776522111 111111 1
Q ss_pred cchHHHHHHHh--cCCcEEEEEecCCCccc----ccccccCCCCCCCCcEE-E----------EEeCchhhhhhccccee
Q 007339 73 RRPGRLLGMLK--AKEKFVLILDDMWEAFP----LQEIGIPEPSEENGCKL-V----------ITTRLYRVCRSMKCKQV 135 (607)
Q Consensus 73 ~~~~~l~~~~~--~~~~~LlVlDdv~~~~~----~~~l~~~~~~~~~~~~I-l----------iTtR~~~~~~~~~~~~~ 135 (607)
--...+...++ .++.+|+++||+....+ +..+....|+.. |..= + |||......+...+-.+
T Consensus 226 ltGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSav-GYQpTLatemg~lQERItstk~GSITSiQavyv 304 (468)
T COG0055 226 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAV-GYQPTLATEMGQLQERITSTKKGSITSVQAVYV 304 (468)
T ss_pred hhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCcccc-ccCchhHHHHHHHHHHHhcCCCCceEEEEEEEe
Confidence 11223344443 47999999999876533 333433333210 1000 0 11111111222222225
Q ss_pred ecccCCHHHHHHHhHhh
Q 007339 136 AVELLSKQEAFNLFIDG 152 (607)
Q Consensus 136 ~l~~L~~~ea~~L~~~~ 152 (607)
+.+.|++-.+..-|.+.
T Consensus 305 PaDDlTDPapattFaHL 321 (468)
T COG0055 305 PADDLTDPAPATTFAHL 321 (468)
T ss_pred ccccCCCcchhhhhhhc
Confidence 67788888777777553
No 426
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.54 E-value=0.016 Score=52.48 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=28.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEE
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVT 43 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 43 (607)
.|+|.|.|+.|+|||||+..++.... ..|..++...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~---~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP---DKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST---TTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc---cccccceeec
Confidence 58899999999999999999999875 4464444443
No 427
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.53 E-value=0.0052 Score=31.14 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=9.4
Q ss_pred cccceEEEecccchhhhh
Q 007339 583 HDLKVLRFHYCHNLKNLF 600 (607)
Q Consensus 583 ~~L~~L~l~~c~~l~~lp 600 (607)
++|++|++++|+ |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777888777 66665
No 428
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.50 E-value=0.0026 Score=67.66 Aligned_cols=172 Identities=17% Similarity=0.073 Sum_probs=102.6
Q ss_pred cCCccCcEeecccccCCCCC---CcccCCCCCCEEeccCC--chhhh----HHhccCCCCCCeeeccCCc-CCcCCCccc
Q 007339 375 SDLTNLRSLLLRWCGRLKRV---PSLAKLLALQYLDLEGT--WIEEV----LECMEMLENLSHLYLSSLQ-LKKFPTGIL 444 (607)
Q Consensus 375 ~~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~--~l~~l----~~~~~~l~~L~~L~l~~~~-l~~~~~~~~ 444 (607)
..++.|+.+.+..|...... +....+++|+.|+++++ .+... ......+.+|+.|+++.+. ++......+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34788899999888666542 36778899999999873 22211 2234566899999999887 655443333
Q ss_pred c-CCCCCCEEEcccCcchhhhhHHHh-hcccccccEEEeeecCccccccccc-cccCCcceeEEEEeecchhhhhhcccc
Q 007339 445 P-RLRNLYKLKLSFGNEALRETVEEA-ASLSDGLDYFEGCFSKLKDFNRYVK-STDGRGSKNYCLVLSESWMYYMFIRDL 521 (607)
Q Consensus 445 ~-~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~ 521 (607)
. .+++|+.|.+.+|....+..+..+ ..++ +|++|++++|.......... ...++.|+.+.+...
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~-~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~------------ 331 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCP-SLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL------------ 331 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcC-cccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc------------
Confidence 3 488999999887764455555444 4566 89999999876532111111 111333333322211
Q ss_pred cccccccceeeeeeeccCCC-CC---cccCCcccceeeeeeec
Q 007339 522 ITDLEVDKSVRLFACKICER-EE---PIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 522 ~~~l~~L~~L~L~~~~~~~~-~~---~~~~~~~L~~L~l~~~~ 560 (607)
.+++.++.+.+..+..... .. ....+++++.+.+..|.
T Consensus 332 -~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 332 -NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred -CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 1135566666655543221 11 15566777777777775
No 429
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.50 E-value=0.059 Score=58.83 Aligned_cols=88 Identities=15% Similarity=0.178 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
.++|+++|+.|+||||.+..++..+... .....|..+...... ...+-++...+.++.+.....+..+ .....+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~- 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-EGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAAL- 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-cCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHh-
Confidence 5799999999999999999999877422 222346777655432 1334445555555554432222222 23333333
Q ss_pred cCCcEEEEEecCC
Q 007339 84 AKEKFVLILDDMW 96 (607)
Q Consensus 84 ~~~~~LlVlDdv~ 96 (607)
.+ .-++++|-.-
T Consensus 262 ~~-~D~VLIDTAG 273 (767)
T PRK14723 262 GD-KHLVLIDTVG 273 (767)
T ss_pred cC-CCEEEEeCCC
Confidence 22 2477777654
No 430
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.50 E-value=0.019 Score=55.86 Aligned_cols=42 Identities=31% Similarity=0.493 Sum_probs=32.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDL 50 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 50 (607)
++|+|.|.||+||||+|..++.....+ .+ .+.-|++....+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~--G~-kVlliD~Dpq~n~ 43 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEM--GK-KVMIVGCDPKADS 43 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhC--CC-eEEEEEcCCCCCc
Confidence 568888999999999999999998643 22 4788887766543
No 431
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.49 E-value=0.035 Score=59.66 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=28.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
..|.|+|..|+|||++|+.+.+.-... -...+.|+|...
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~s~r~---~~pfv~i~c~~~ 258 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYLSPRA---KRPFVKVNCAAL 258 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeecCCC
Confidence 357899999999999999998764322 223566777654
No 432
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.49 E-value=0.066 Score=51.00 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=36.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIA 58 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 58 (607)
..++.|.|++|+|||++|.+++...... . -..++|+++... ..++...+.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~-g~~vly~s~E~~--~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK-Q-GKPVLFFSLEMS--KEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-C-CCceEEEeCCCC--HHHHHHHHH
Confidence 3588999999999999999998887532 1 224888887763 445555444
No 433
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.48 E-value=0.017 Score=60.06 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=49.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEE-EEEeCCCC-CHHHHHHHHHHHH-ccCCCCCccc----ccchHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVI-WVTVSQPL-DLFKLQTEIATAL-KQSLPENEDK----VRRPGRL 78 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~-wv~~~~~~-~~~~~~~~i~~~l-~~~~~~~~~~----~~~~~~l 78 (607)
...+|+|++|+|||+|+..+++.... ++-+..+ .+-+.+.. .+.++.+.+-.++ ..+....... ......+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~--n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT--NNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh--cCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999987642 3344433 33444432 3333333221111 1111111111 1112223
Q ss_pred HHHHh-cCCcEEEEEecCCCc
Q 007339 79 LGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 79 ~~~~~-~~~~~LlVlDdv~~~ 98 (607)
..++. .++.+||++|++...
T Consensus 495 Ae~fre~G~dVlillDSlTR~ 515 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSITRL 515 (672)
T ss_pred HHHHHHcCCCEEEEEeCchHH
Confidence 33332 689999999998655
No 434
>PRK14530 adenylate kinase; Provisional
Probab=95.47 E-value=0.011 Score=55.10 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+.|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998874
No 435
>PRK13949 shikimate kinase; Provisional
Probab=95.44 E-value=0.013 Score=52.14 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+.|+|.|++|+||||+++.++..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999975
No 436
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.43 E-value=0.015 Score=50.41 Aligned_cols=30 Identities=37% Similarity=0.457 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEK 32 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~ 32 (607)
+...+|.++|++|.||||+|..+......+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 345689999999999999999999998644
No 437
>PRK13947 shikimate kinase; Provisional
Probab=95.43 E-value=0.012 Score=52.78 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
-|.|.|++|+||||+|+.++..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999975
No 438
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.43 E-value=0.016 Score=48.77 Aligned_cols=28 Identities=25% Similarity=0.156 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
...+|.+.|.-|+||||+++.++..+..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3468999999999999999999998753
No 439
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.41 E-value=0.012 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
++|+|.|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999865
No 440
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.41 E-value=0.022 Score=53.61 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=29.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
.++.|.|++|+|||++|.+++.....+ .=+.++|++...+
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEP 59 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCC
Confidence 578999999999999999988765322 0234889987664
No 441
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.40 E-value=0.016 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...++.|.||+|+|||||++.+..+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 35689999999999999999999885
No 442
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.40 E-value=0.016 Score=51.18 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
..++++|.|+.|+|||||++.++.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4578999999999999999999988763
No 443
>PRK14527 adenylate kinase; Provisional
Probab=95.40 E-value=0.015 Score=53.07 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999998874
No 444
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.38 E-value=0.039 Score=53.24 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=38.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEI 57 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 57 (607)
..+++.|+|.+|+|||++|.++++.-. .....++||...+. ..++.+..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA---REGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH---hcCCcEEEEEecCC--HHHHHHHH
Confidence 457899999999999999999999976 33666999998875 33444433
No 445
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.37 E-value=0.063 Score=51.48 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=49.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHH--HHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKL--QTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
...++++.|++|+||||+++.++.....+ -..+.+++..... +... +....+.++.+.....+.. .+....+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~r-i~~~~ql~~~~~~~~~~~~~~~~~~-~l~~~l~~ 148 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSR-IGTVQQLQDYVKTIGFEVIAVRDEA-AMTRALTY 148 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCC-HHHHHHHHHHhhhcCceEEecCCHH-HHHHHHHH
Confidence 45799999999999999999998886422 1247777766432 2211 1222222332222211221 22333333
Q ss_pred Hhc-CCcEEEEEecCCCc
Q 007339 82 LKA-KEKFVLILDDMWEA 98 (607)
Q Consensus 82 ~~~-~~~~LlVlDdv~~~ 98 (607)
+.. ++.-++|+|..-..
T Consensus 149 l~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 149 FKEEARVDYILIDTAGKN 166 (270)
T ss_pred HHhcCCCCEEEEECCCCC
Confidence 322 35678888987444
No 446
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.36 E-value=0.012 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|+|.|++|+|||||++.++..+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998764
No 447
>PRK13948 shikimate kinase; Provisional
Probab=95.35 E-value=0.017 Score=51.98 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=25.5
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....+.|++.|+.|+||||+++.++....
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999999874
No 448
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.35 E-value=0.024 Score=57.99 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..|.++|++|+|||++|+.++....
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5689999999999999999998764
No 449
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.33 E-value=0.061 Score=53.65 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=40.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHccCCCCCccc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD-LFKLQTEIATALKQSLPENEDK 71 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~ 71 (607)
+.++|.++||.||||||-...++.++.-. ..-..+..|...+-.- ..+=++.-++-++.+..--.+.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~ 269 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSP 269 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCH
Confidence 37899999999999997666666665411 2233477787766432 2222334455556654433333
No 450
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.33 E-value=0.12 Score=50.85 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=34.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEI 57 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 57 (607)
..++|.|..|+|||+|+.++++... -+.++++-+.+.. ...++++++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~~-----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYSN-----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCCC-----CCEEEEEEeCCChHHHHHHHHHH
Confidence 4689999999999999999988742 3568888887643 344555543
No 451
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.32 E-value=0.011 Score=54.78 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINN 27 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~ 27 (607)
.+++.|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 38999999999999999999874
No 452
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.32 E-value=0.017 Score=54.54 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=25.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhccc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
+...+|+|.|++|+|||||++.++...+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45678999999999999999999988764
No 453
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.32 E-value=0.046 Score=46.59 Aligned_cols=37 Identities=19% Similarity=0.031 Sum_probs=28.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEe
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTV 44 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 44 (607)
.+.|.|+.|+|||+.+..++.+.... .....++|+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p 38 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAP 38 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcC
Confidence 47899999999999999998887543 34455777753
No 454
>PRK13975 thymidylate kinase; Provisional
Probab=95.32 E-value=0.015 Score=53.39 Aligned_cols=25 Identities=36% Similarity=0.388 Sum_probs=23.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+|+|.|+.|+||||+|+.++..+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999999985
No 455
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.31 E-value=0.013 Score=54.45 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=29.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
|+|+|.|.||+||||++..++..+...+ + .+.-|+....
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G--~-rvLliD~D~q 39 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMG--K-KVLQVGCDPK 39 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCC--C-cEEEEeCCCC
Confidence 5799999999999999999999887432 2 2555665443
No 456
>PRK14532 adenylate kinase; Provisional
Probab=95.30 E-value=0.016 Score=52.80 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.1
Q ss_pred EEEEcCCCChHHHHHHHHHhhcc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
|.|.|++|+||||+|+.++..+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998763
No 457
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.29 E-value=0.069 Score=55.07 Aligned_cols=92 Identities=20% Similarity=0.284 Sum_probs=54.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHHccCC------CCCcccc-----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-LDLFKLQTEIATALKQSL------PENEDKV----- 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~----- 72 (607)
...++|.|.+|+|||+|+.+++..... ++-+.++++-+.+. ....++.+.+...-.... ....+..
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~--~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK--QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh--hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 356899999999999999999988753 24566777766553 345555555543211100 0011111
Q ss_pred -cchHHHHHHHh-c-CCcEEEEEecCCCc
Q 007339 73 -RRPGRLLGMLK-A-KEKFVLILDDMWEA 98 (607)
Q Consensus 73 -~~~~~l~~~~~-~-~~~~LlVlDdv~~~ 98 (607)
...-.+.+.++ + ++++|+++|++-..
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 11222333333 3 89999999998544
No 458
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.28 E-value=0.023 Score=52.14 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|+|.+|+|||||++.++--.+
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 45789999999999999999986653
No 459
>PRK13768 GTPase; Provisional
Probab=95.27 E-value=0.025 Score=54.07 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=28.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVS 45 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 45 (607)
.+++|.|++|+||||++..++...... . ..++.++..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~--g-~~v~~i~~D 39 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ--G-YDVAIVNLD 39 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc--C-CceEEEECC
Confidence 578999999999999999999887632 1 236666543
No 460
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=0.13 Score=55.10 Aligned_cols=147 Identities=13% Similarity=0.076 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC-----CCCHHHHHHHHHHHHccCCCCCcccccchHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ-----PLDLFKLQTEIATALKQSLPENEDKVRRPGRL 78 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 78 (607)
...++.++|.+|+||||+++.++..... + ++-+++.+ ....+.-+..+...
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~---h---~~evdc~el~~~s~~~~etkl~~~f~~------------------ 485 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGL---H---LLEVDCYELVAESASHTETKLQAIFSR------------------ 485 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCC---c---eEeccHHHHhhcccchhHHHHHHHHHH------------------
Confidence 4568899999999999999999999852 2 33343211 11111222222211
Q ss_pred HHHHhcCCcEEEEEecCCCc-------cc------ccccc--cCCCCCCCCcEEEEEeCc-hhhhhh---cccceeeccc
Q 007339 79 LGMLKAKEKFVLILDDMWEA-------FP------LQEIG--IPEPSEENGCKLVITTRL-YRVCRS---MKCKQVAVEL 139 (607)
Q Consensus 79 ~~~~~~~~~~LlVlDdv~~~-------~~------~~~l~--~~~~~~~~~~~IliTtR~-~~~~~~---~~~~~~~l~~ 139 (607)
.+.-++.+|.+-|++-. ++ .+... ..+....++..++.||.+ +.+... +-...++++.
T Consensus 486 ---a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~ 562 (953)
T KOG0736|consen 486 ---ARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPA 562 (953)
T ss_pred ---HhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCC
Confidence 11224445555444311 00 00000 112222334444444442 222222 2222278899
Q ss_pred CCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 140 LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 140 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
++++|-.++|..+....... .+...+.+++++.|+-.+
T Consensus 563 lse~qRl~iLq~y~~~~~~n----~~v~~k~~a~~t~gfs~~ 600 (953)
T KOG0736|consen 563 LSEEQRLEILQWYLNHLPLN----QDVNLKQLARKTSGFSFG 600 (953)
T ss_pred CCHHHHHHHHHHHHhccccc----hHHHHHHHHHhcCCCCHH
Confidence 99999999998887554222 455667888888887653
No 461
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.012 Score=52.30 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=24.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEK 32 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~ 32 (607)
+.|.++|.+|+||||+|++++...+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 568899999999999999999998754
No 462
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.21 E-value=0.02 Score=45.93 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHIN 26 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~ 26 (607)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999986
No 463
>PRK05973 replicative DNA helicase; Provisional
Probab=95.21 E-value=0.053 Score=50.79 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTE 56 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 56 (607)
..++.|.|.+|+|||++|.+++..... + -..++|++.... ..++.+.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~--~-Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMK--S-GRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh--c-CCeEEEEEEeCC--HHHHHHH
Confidence 457899999999999999999887642 2 234778887764 3444444
No 464
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=95.20 E-value=2.2 Score=40.46 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=24.0
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.+-...+.++|+.|+||.++|.+++...
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~l 31 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSI 31 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHH
Confidence 4556778899999999999999998776
No 465
>PRK05922 type III secretion system ATPase; Validated
Probab=95.19 E-value=0.11 Score=53.11 Aligned_cols=89 Identities=15% Similarity=0.223 Sum_probs=49.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHHccCCC------CCcccc-----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ-PLDLFKLQTEIATALKQSLP------ENEDKV----- 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~------~~~~~~----- 72 (607)
...++|.|+.|+|||||.+.++...+ .+...+.-+.. ..+..+.+.+.......... .+.+..
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~~-----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGSK-----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC-----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 34689999999999999999987643 22233333333 23344555444433322110 000000
Q ss_pred -cchHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 73 -RRPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 73 -~~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
...-.+.+.++ +++++|+++|++-..
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 01122333332 689999999998655
No 466
>PRK08149 ATP synthase SpaL; Validated
Probab=95.19 E-value=0.056 Score=55.17 Aligned_cols=89 Identities=12% Similarity=0.246 Sum_probs=50.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHHccCC------CCCcccc-----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ-PLDLFKLQTEIATALKQSL------PENEDKV----- 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~~~~~----- 72 (607)
...++|.|.+|+|||||+..++.... .+.++...+.. ..+..++............ ..+.+..
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~~-----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHSE-----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCCC-----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 45789999999999999999987642 23333444433 3345555555554322110 0111111
Q ss_pred -cchHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 73 -RRPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 73 -~~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
.....+.+.+. +++++|+++|++-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 01112233332 689999999998655
No 467
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.18 E-value=0.019 Score=53.20 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=26.0
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
++++++|++.|..|+|||||..++.....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46799999999999999999999998753
No 468
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.17 E-value=0.087 Score=53.89 Aligned_cols=89 Identities=8% Similarity=0.164 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHHccCC------CCCccccc----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-LDLFKLQTEIATALKQSL------PENEDKVR---- 73 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 73 (607)
...++|.|..|+|||||++.++...+ .+.+++.-+.+. ....++....+..-+... ..+.+...
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~-----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD-----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 45789999999999999999987753 234555555543 234444443433221110 00111110
Q ss_pred --chHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 74 --RPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 74 --~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
..-.+.+.+. +++++|+++|++-..
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 1111233332 689999999998654
No 469
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.16 E-value=0.019 Score=53.09 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhh
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
+..++|.|.|++|+|||||+..+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999999999754
No 470
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=95.15 E-value=0.28 Score=48.68 Aligned_cols=55 Identities=18% Similarity=0.061 Sum_probs=34.6
Q ss_pred eecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhh
Q 007339 135 VAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASM 189 (607)
Q Consensus 135 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l 189 (607)
++++..+.+|+.+++.-+...+...+....++-.+++.=.-+|+|--++-++.++
T Consensus 406 i~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 406 IEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 6788899999988887766555222111123445555556688996666665554
No 471
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.15 E-value=0.016 Score=50.75 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhcc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
|.|+|++|+||||+|+.++..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998864
No 472
>PRK13946 shikimate kinase; Provisional
Probab=95.15 E-value=0.018 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+.|++.|++|+||||+++.++..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36799999999999999999999974
No 473
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.13 E-value=0.041 Score=56.37 Aligned_cols=92 Identities=17% Similarity=0.280 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCC------CCCcccc-----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSL------PENEDKV----- 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 72 (607)
...++|.|.+|+|||+|+.+++..... .+-+.++|+-+.+.. ...++.+.+...=.... ..+.+..
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~--~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVG--QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 346799999999999999999888542 234677788776543 35555555543211110 0111111
Q ss_pred -cchHHHHHHHh--cCCcEEEEEecCCCc
Q 007339 73 -RRPGRLLGMLK--AKEKFVLILDDMWEA 98 (607)
Q Consensus 73 -~~~~~l~~~~~--~~~~~LlVlDdv~~~ 98 (607)
-..-.+.+.++ +++++|+++||+-..
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 11223444444 489999999998654
No 474
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.13 E-value=0.049 Score=55.63 Aligned_cols=90 Identities=14% Similarity=0.229 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC------CCcccc------
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP------ENEDKV------ 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~------ 72 (607)
...++|.|..|+|||+|+..++...+ . ...++...-....+..++....+..-+.... ...+..
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~---~-~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK---A-DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC---C-CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 45789999999999999999988753 1 2233333223335666666655544321110 111110
Q ss_pred cchHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 73 RRPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 73 ~~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
.....+.+.+. +++++|+++|++-..
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHHH
Confidence 01111222222 589999999998765
No 475
>COG4240 Predicted kinase [General function prediction only]
Probab=95.13 E-value=0.064 Score=48.54 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=49.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHcc----CCCCCcccccchHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQ----SLPENEDKVRRPGRLL 79 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~----~~~~~~~~~~~~~~l~ 79 (607)
..=+++|.|+-|.||||++..++.....++. ..+...+...-.-..+....++++... ....+.-+......+.
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~--ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGL--ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcc--cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 4557899999999999999999999875522 367777765533333344445555311 1112223344556666
Q ss_pred HHHhcCC
Q 007339 80 GMLKAKE 86 (607)
Q Consensus 80 ~~~~~~~ 86 (607)
+.+.+++
T Consensus 127 nai~~g~ 133 (300)
T COG4240 127 NAIARGG 133 (300)
T ss_pred HHHhcCC
Confidence 6666554
No 476
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.13 E-value=0.046 Score=46.17 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=23.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+|.|.|.+|.||||+++.+.+.+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 4899999999999999999999986
No 477
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=0.037 Score=50.17 Aligned_cols=103 Identities=22% Similarity=0.236 Sum_probs=59.6
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHccCCCC-------CcccccchHHH
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFND--VIWVTVSQPLDLFKLQTEIATALKQSLPE-------NEDKVRRPGRL 78 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~--~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l 78 (607)
..|.|++|+||||+.+.+++-.....+.|-. +.-|+-+. +|+..+...... --+..-...-+
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers---------EIag~~~gvpq~~~g~R~dVld~cpk~~gm 210 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS---------EIAGCLNGVPQHGRGRRMDVLDPCPKAEGM 210 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc---------hhhccccCCchhhhhhhhhhcccchHHHHH
Confidence 6789999999999999999887654344432 44444222 233322111000 01111223334
Q ss_pred HHHHhcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeC
Q 007339 79 LGMLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTR 122 (607)
Q Consensus 79 ~~~~~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR 122 (607)
.....+-.+=++|+|.+-..++...+.... ..|.+++.|.-
T Consensus 211 mmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaH 251 (308)
T COG3854 211 MMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAH 251 (308)
T ss_pred HHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeec
Confidence 555556678899999998876655444333 35776666654
No 478
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.11 E-value=0.022 Score=52.82 Aligned_cols=60 Identities=28% Similarity=0.330 Sum_probs=38.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEe-------CCCCCHHHH--HHHHHHHHccC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTV-------SQPLDLFKL--QTEIATALKQS 64 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~-------~~~~~~~~~--~~~i~~~l~~~ 64 (607)
...+|.+.||+|.||||+++++..+...+ ....+++=++. .-.-++.+. ++++.++.+..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~-~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAK-KTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhc-cCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 45678999999999999999999888754 33333444431 112233332 55677766553
No 479
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.11 E-value=0.13 Score=50.74 Aligned_cols=89 Identities=10% Similarity=0.201 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHHccCC------CCCcccc-----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVS-QPLDLFKLQTEIATALKQSL------PENEDKV----- 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~------~~~~~~~----- 72 (607)
...++|.|..|+|||||++.++.... .+.....-+. ...++.++.......-.... ..+.+..
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 35789999999999999999887753 2233333333 33455555554443321110 0111111
Q ss_pred -cchHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 73 -RRPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 73 -~~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
.....+.+.+. +++++|+++|++-..
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchHH
Confidence 11112223332 689999999998554
No 480
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.10 E-value=0.072 Score=54.40 Aligned_cols=90 Identities=12% Similarity=0.192 Sum_probs=48.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCC------CCCccccc-----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSL------PENEDKVR----- 73 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~----- 73 (607)
...++|.|..|+|||||++.++...+ ....++...-.......++.+..+..-+... ..+.+...
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 35789999999999999998887653 1222332222333345555554433321110 01111110
Q ss_pred -chHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 74 -RPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 74 -~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
..-.+.+.+. +++++|+++|++-..
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1112333332 689999999998654
No 481
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.09 E-value=0.05 Score=58.64 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=63.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccC-CCC--CcccccchHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQS-LPE--NEDKVRRPGRLLGM 81 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-~~~--~~~~~~~~~~l~~~ 81 (607)
.++..|+|.+|.||||+++.+...+......-...+.+...+..-...+.+.+...+..- ... ..........+++.
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 468899999999999999998877643211112356666555544455555444332110 000 00001123333333
Q ss_pred Hhc-----------CC---cEEEEEecCCCc--ccccccccCCCCCCCCcEEEEEeCchhhhh
Q 007339 82 LKA-----------KE---KFVLILDDMWEA--FPLQEIGIPEPSEENGCKLVITTRLYRVCR 128 (607)
Q Consensus 82 ~~~-----------~~---~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~IliTtR~~~~~~ 128 (607)
+.. +. --++|+|.+.-. .....+...++ .++|+|+-.-..+.+.
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~QL~s 306 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQLAS 306 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhhcCC
Confidence 321 01 138999987543 22333333443 5678888777555443
No 482
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.08 E-value=0.021 Score=55.20 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+..-+|+|.|+.|+||||+|+.+.....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999988866653
No 483
>PRK06761 hypothetical protein; Provisional
Probab=95.08 E-value=0.027 Score=54.09 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|.|.|++|+||||+|+.++....
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~ 28 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILS 28 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36899999999999999999999985
No 484
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.08 E-value=0.033 Score=56.72 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..|.+.|++|+|||++|+.++....
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4699999999999999999998764
No 485
>PRK05439 pantothenate kinase; Provisional
Probab=95.04 E-value=0.022 Score=55.50 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+..-+|+|.|.+|+||||+|+.+.....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999988764
No 486
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.03 E-value=0.024 Score=52.14 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....+|+|.|++|+||||+|+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999999864
No 487
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.03 E-value=0.059 Score=55.29 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=50.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCC------CCCccccc----
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSL------PENEDKVR---- 73 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~---- 73 (607)
....++|.|..|+|||||++.++..... -.++++..-.......++.+.+...-.... ..+.+...
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3467899999999999999999876531 123444333334445555555543321110 00111111
Q ss_pred --chHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 74 --RPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 74 --~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
..-.+.+.+. +++++|+++|++-..
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 1111233332 689999999998655
No 488
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.03 E-value=0.022 Score=50.93 Aligned_cols=26 Identities=31% Similarity=0.361 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+.|+|.|+.|+||||+|+.++....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45699999999999999999998864
No 489
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.03 Score=54.73 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+-|.++||+|.|||-||++++....
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 3478999999999999999999975
No 490
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.02 E-value=0.027 Score=55.03 Aligned_cols=40 Identities=33% Similarity=0.465 Sum_probs=30.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL 48 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (607)
++|+|.|-|||||||+|..++.-.... .+ .+.-|++....
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~--G~-rVLliD~Dpq~ 41 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAES--GK-KVLVVGCDPKA 41 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhC--CC-EEEEEeeCCcc
Confidence 578899999999999999999998643 22 36777665543
No 491
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.01 E-value=0.021 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHhhcc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
|.|.|..|+|||||.+.++....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999998764
No 492
>PLN02348 phosphoribulokinase
Probab=94.98 E-value=0.023 Score=56.70 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+...+|+|.|.+|+||||+|+.+...+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999999885
No 493
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.94 E-value=0.088 Score=56.15 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=27.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL 48 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (607)
..|.|+|..|+||+.+|+.+...-. + .-...+.++|....
T Consensus 228 ~pvlI~GE~GtGK~~lA~aiH~~s~-r--~~~pfv~inca~~~ 267 (520)
T PRK10820 228 APLLITGDTGTGKDLLAYACHLRSP-R--GKKPFLALNCASIP 267 (520)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCC-C--CCCCeEEeccccCC
Confidence 3588999999999999999654422 1 12235677777654
No 494
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.94 E-value=0.041 Score=55.45 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=34.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeC-CCCCHHHHHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVS-QPLDLFKLQTEIATAL 61 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l 61 (607)
.+-|.++|++|+|||++|+.++.......-..+...+.... ...+..++.+.+....
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A 104 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAA 104 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHH
Confidence 36789999999999999999999986432223322222111 1224555555554443
No 495
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.94 E-value=0.02 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHhhcc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
|.|.|++|+||||+|+.++..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999863
No 496
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.94 E-value=0.45 Score=46.07 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=37.6
Q ss_pred CCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEe-Cchhhhhhcccce--eecccCCHHHHHHHhH
Q 007339 85 KEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITT-RLYRVCRSMKCKQ--VAVELLSKQEAFNLFI 150 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTt-R~~~~~~~~~~~~--~~l~~L~~~ea~~L~~ 150 (607)
+++.++|+|+++.+. ....+...+-.-..++.+|++| ....+........ +.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 577899999999884 3444444443223345555555 4445554443333 77766 6666666664
No 497
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.92 E-value=0.052 Score=51.64 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=48.2
Q ss_pred ceEEEEEcCCCChHHHHH-HHHHhhcccCCCCCCeE-EEEEeCCC-CCHHHHHHHHHHHHccCC------CCCccccc--
Q 007339 5 VSKIGVWGMGGIGKTTIM-SHINNKLQEKPNKFNDV-IWVTVSQP-LDLFKLQTEIATALKQSL------PENEDKVR-- 73 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa-~~~~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~~-- 73 (607)
...++|.|.+|+|||+|| ..+++.. +-+.+ +++-+.+. .+..++.+.+...=.... ..+.+...
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 346799999999999996 4454432 23333 55666554 345555555543211100 01111111
Q ss_pred ----chHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 74 ----RPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 74 ----~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
..-.+.+.+. +++++|+++||+...
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 0122333333 689999999998655
No 498
>PRK14531 adenylate kinase; Provisional
Probab=94.92 E-value=0.022 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+.|.|.|++|+||||+|+.++..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999874
No 499
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=94.92 E-value=0.031 Score=54.38 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=28.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
++|+|.|-|||||||+|..++.-+... .+ .+.-+++..
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~--G~-rVllvD~Dp 39 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTM--GN-KILLVGCDP 39 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhh--CC-CeEEEeccc
Confidence 578888999999999999999988643 22 255555443
No 500
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.92 E-value=0.023 Score=50.84 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|+|.|+.|+||||+|+.+++.+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999998763
Done!