Query 007339
Match_columns 607
No_of_seqs 298 out of 3964
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 23:18:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007339.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007339hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4E-40 1.4E-44 351.7 24.2 294 3-319 150-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 7.9E-35 2.7E-39 314.1 16.9 266 3-311 148-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 4E-34 1.4E-38 338.0 24.3 291 2-318 144-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.7E-31 5.8E-36 289.6 23.5 287 3-316 145-450 (591)
5 4fcg_A Uncharacterized protein 99.8 3E-21 1E-25 192.5 12.8 221 353-592 79-310 (328)
6 3zyi_A Leucine-rich repeat-con 99.8 8.8E-21 3E-25 198.4 11.8 223 355-594 75-301 (452)
7 3zyj_A Leucine-rich repeat-con 99.8 1.1E-20 3.8E-25 196.9 11.5 230 345-594 57-290 (440)
8 3o6n_A APL1; leucine-rich repe 99.8 2E-20 6.9E-25 191.9 12.8 141 340-485 54-197 (390)
9 2z80_A TOLL-like receptor 2, v 99.8 3.7E-20 1.3E-24 187.1 14.4 240 344-602 44-320 (353)
10 1ogq_A PGIP-2, polygalacturona 99.8 1.1E-20 3.6E-25 187.4 10.2 236 345-601 67-309 (313)
11 3oja_B Anopheles plasmodium-re 99.8 1.7E-20 5.9E-25 203.1 11.9 123 340-462 60-185 (597)
12 1ogq_A PGIP-2, polygalacturona 99.8 9.4E-21 3.2E-25 187.8 8.4 231 355-602 50-287 (313)
13 3rgz_A Protein brassinosteroid 99.8 5.2E-20 1.8E-24 205.2 14.8 248 340-603 404-724 (768)
14 1xku_A Decorin; proteoglycan, 99.8 6.1E-20 2.1E-24 183.7 12.8 195 355-559 52-250 (330)
15 4ecn_A Leucine-rich repeat pro 99.8 7.1E-20 2.4E-24 203.1 11.4 160 340-507 435-627 (876)
16 4eco_A Uncharacterized protein 99.8 1.1E-19 3.6E-24 198.0 11.7 161 340-507 193-385 (636)
17 3v47_A TOLL-like receptor 5B a 99.8 1.5E-19 5.2E-24 189.5 12.3 109 351-459 50-165 (455)
18 2id5_A Lingo-1, leucine rich r 99.8 5.8E-19 2E-23 186.2 16.8 243 345-601 46-313 (477)
19 4ecn_A Leucine-rich repeat pro 99.8 3.5E-20 1.2E-24 205.5 7.7 236 345-594 480-764 (876)
20 2z66_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 179.9 10.0 224 355-595 28-260 (306)
21 4fmz_A Internalin; leucine ric 99.8 1.2E-18 4.1E-23 175.6 16.8 217 351-596 84-300 (347)
22 4fmz_A Internalin; leucine ric 99.8 1E-18 3.4E-23 176.2 15.8 223 351-601 106-328 (347)
23 4fcg_A Uncharacterized protein 99.8 2.6E-19 8.9E-24 178.4 11.1 208 376-602 79-296 (328)
24 2ft3_A Biglycan; proteoglycan, 99.8 3E-19 1E-23 178.8 11.0 194 355-559 54-251 (332)
25 3t6q_A CD180 antigen; protein- 99.8 5.3E-19 1.8E-23 192.4 13.9 140 346-487 269-413 (606)
26 2id5_A Lingo-1, leucine rich r 99.8 6.6E-19 2.3E-23 185.7 13.6 234 346-595 95-332 (477)
27 1ozn_A Reticulon 4 receptor; N 99.8 1.1E-18 3.8E-23 170.6 12.8 201 354-560 31-236 (285)
28 2z62_A TOLL-like receptor 4, v 99.8 1.3E-18 4.6E-23 169.2 12.9 135 355-490 28-165 (276)
29 3v47_A TOLL-like receptor 5B a 99.8 1.1E-18 3.8E-23 182.9 12.8 240 344-601 68-388 (455)
30 1wwl_A Monocyte differentiatio 99.8 1.6E-19 5.4E-24 179.0 6.0 230 345-594 56-307 (312)
31 3vq2_A TLR4, TOLL-like recepto 99.8 3.6E-18 1.2E-22 185.8 16.8 148 344-491 45-198 (606)
32 3t6q_A CD180 antigen; protein- 99.8 2.6E-18 8.9E-23 186.9 15.6 213 344-560 46-312 (606)
33 2o6q_A Variable lymphocyte rec 99.8 4.6E-18 1.6E-22 164.7 15.6 196 357-560 18-216 (270)
34 3rgz_A Protein brassinosteroid 99.8 1.6E-18 5.4E-23 193.2 14.0 247 342-602 380-699 (768)
35 1h6u_A Internalin H; cell adhe 99.8 3.3E-18 1.1E-22 168.9 13.9 192 351-560 37-228 (308)
36 4eco_A Uncharacterized protein 99.8 8.6E-19 2.9E-23 190.9 10.5 238 345-601 319-583 (636)
37 3o6n_A APL1; leucine-rich repe 99.8 4.5E-18 1.5E-22 174.3 15.0 96 346-441 84-182 (390)
38 1ozn_A Reticulon 4 receptor; N 99.8 7.5E-19 2.6E-23 171.8 8.0 237 343-594 44-285 (285)
39 2z66_A Variable lymphocyte rec 99.8 7.7E-19 2.6E-23 173.7 7.7 212 343-560 40-259 (306)
40 3oja_B Anopheles plasmodium-re 99.7 4.9E-18 1.7E-22 183.8 13.9 96 346-441 90-188 (597)
41 3o53_A Protein LRIM1, AGAP0063 99.7 8.8E-19 3E-23 174.0 7.2 222 349-596 28-250 (317)
42 3rfs_A Internalin B, repeat mo 99.7 3E-18 1E-22 166.1 9.9 178 351-560 37-216 (272)
43 1o6v_A Internalin A; bacterial 99.7 1.6E-17 5.4E-22 174.4 15.6 84 352-438 65-148 (466)
44 3zyj_A Leucine-rich repeat-con 99.7 6.9E-18 2.4E-22 175.7 12.8 210 343-560 76-290 (440)
45 2ft3_A Biglycan; proteoglycan, 99.7 9.8E-18 3.4E-22 167.7 13.4 222 355-600 33-257 (332)
46 3zyi_A Leucine-rich repeat-con 99.7 8E-18 2.7E-22 175.9 13.2 207 345-560 89-301 (452)
47 2z7x_B TOLL-like receptor 1, v 99.7 1.2E-17 4E-22 178.2 14.0 103 355-459 21-126 (520)
48 3oja_A Leucine-rich immune mol 99.7 2.6E-18 8.9E-23 180.6 8.8 218 353-596 32-250 (487)
49 2z80_A TOLL-like receptor 2, v 99.7 2.7E-18 9.1E-23 173.4 8.5 219 345-566 66-318 (353)
50 3bz5_A Internalin-J, INLJ; leu 99.7 1.5E-17 5.1E-22 173.3 14.1 223 351-601 60-304 (457)
51 3vq2_A TLR4, TOLL-like recepto 99.7 1.2E-17 4E-22 181.8 13.7 141 345-489 25-168 (606)
52 3o53_A Protein LRIM1, AGAP0063 99.7 3E-19 1E-23 177.4 1.0 231 346-602 49-281 (317)
53 1xku_A Decorin; proteoglycan, 99.7 4.7E-17 1.6E-21 162.7 16.2 236 344-595 65-305 (330)
54 3j0a_A TOLL-like receptor 5; m 99.7 2.9E-17 1E-21 185.0 15.7 112 349-460 42-160 (844)
55 2z63_A TOLL-like receptor 4, v 99.7 4.9E-18 1.7E-22 183.4 8.2 109 350-458 47-159 (570)
56 1o6v_A Internalin A; bacterial 99.7 6.6E-17 2.3E-21 169.6 16.4 216 351-596 173-388 (466)
57 2z63_A TOLL-like receptor 4, v 99.7 5.4E-17 1.9E-21 175.2 15.9 133 355-488 28-163 (570)
58 1p9a_G Platelet glycoprotein I 99.7 2.1E-17 7.2E-22 161.5 11.4 200 351-560 6-206 (290)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.8E-17 1.7E-21 175.0 15.3 104 355-460 52-158 (562)
60 1ziw_A TOLL-like receptor 3; i 99.7 3.3E-17 1.1E-21 180.7 14.1 144 344-489 38-186 (680)
61 2z81_A CD282 antigen, TOLL-lik 99.7 3.7E-17 1.3E-21 175.6 14.1 208 344-560 18-234 (549)
62 2o6q_A Variable lymphocyte rec 99.7 6.3E-17 2.2E-21 156.7 14.0 189 345-542 30-221 (270)
63 3bz5_A Internalin-J, INLJ; leu 99.7 5.5E-17 1.9E-21 169.0 14.3 207 351-594 38-244 (457)
64 2ast_B S-phase kinase-associat 99.7 1E-17 3.5E-22 168.0 7.3 205 351-559 64-282 (336)
65 1ziw_A TOLL-like receptor 3; i 99.7 2.5E-17 8.5E-22 181.7 10.7 157 346-507 19-179 (680)
66 1wwl_A Monocyte differentiatio 99.7 1.5E-17 5.3E-22 164.6 7.2 200 353-560 93-307 (312)
67 3j0a_A TOLL-like receptor 5; m 99.7 2.2E-16 7.6E-21 177.8 17.4 218 347-566 282-520 (844)
68 3oja_A Leucine-rich immune mol 99.7 3.2E-18 1.1E-22 179.9 1.6 220 346-591 49-270 (487)
69 2z7x_B TOLL-like receptor 1, v 99.7 4.2E-16 1.4E-20 166.1 17.7 125 358-488 3-129 (520)
70 2z62_A TOLL-like receptor 4, v 99.7 1.3E-16 4.5E-21 155.1 12.5 186 344-560 41-235 (276)
71 2xwt_C Thyrotropin receptor; s 99.7 3.7E-17 1.3E-21 155.3 8.3 196 355-596 31-239 (239)
72 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.6E-21 161.3 11.8 228 345-592 23-255 (350)
73 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 4.3E-16 1.5E-20 167.6 16.4 130 353-488 29-160 (562)
74 1h6u_A Internalin H; cell adhe 99.7 3.6E-16 1.2E-20 154.2 14.4 175 351-542 59-233 (308)
75 3m19_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 149.9 13.0 128 356-487 15-144 (251)
76 3rfs_A Internalin B, repeat mo 99.7 1.9E-16 6.6E-21 153.4 10.6 179 351-566 59-239 (272)
77 2z81_A CD282 antigen, TOLL-lik 99.7 2.7E-16 9.3E-21 168.8 12.8 200 354-560 4-207 (549)
78 3g06_A SSPH2 (leucine-rich rep 99.7 3.7E-16 1.3E-20 167.7 13.4 209 353-601 79-302 (622)
79 2xwt_C Thyrotropin receptor; s 99.7 1.6E-16 5.6E-21 150.8 9.3 197 361-602 17-223 (239)
80 4glp_A Monocyte differentiatio 99.6 9.3E-17 3.2E-21 158.9 7.1 199 378-594 91-305 (310)
81 3g06_A SSPH2 (leucine-rich rep 99.6 8.1E-16 2.8E-20 165.0 13.4 208 345-601 54-278 (622)
82 2ca6_A RAN GTPase-activating p 99.6 3.5E-17 1.2E-21 167.4 1.6 235 351-596 28-316 (386)
83 1h6t_A Internalin B; cell adhe 99.6 1.6E-15 5.4E-20 148.3 12.3 174 351-541 42-215 (291)
84 1h6t_A Internalin B; cell adhe 99.6 2.2E-15 7.4E-20 147.3 11.8 184 359-560 28-211 (291)
85 3cvr_A Invasion plasmid antige 99.6 3.1E-15 1.1E-19 158.5 12.7 119 355-491 59-177 (571)
86 2ast_B S-phase kinase-associat 99.6 2.8E-16 9.4E-21 157.6 4.4 179 353-536 91-282 (336)
87 1jl5_A Outer protein YOPM; leu 99.6 6E-15 2.1E-19 153.4 14.5 101 351-460 149-249 (454)
88 3m19_A Variable lymphocyte rec 99.6 4.5E-15 1.5E-19 141.9 12.3 164 345-541 28-194 (251)
89 4g8a_A TOLL-like receptor 4; l 99.6 1.2E-14 4.1E-19 158.9 16.9 134 355-489 52-188 (635)
90 2qen_A Walker-type ATPase; unk 99.6 3.4E-14 1.2E-18 143.1 18.5 271 6-312 32-349 (350)
91 1p9a_G Platelet glycoprotein I 99.6 7.1E-15 2.4E-19 143.5 11.7 179 355-541 31-210 (290)
92 1jl5_A Outer protein YOPM; leu 99.6 1.4E-14 4.7E-19 150.7 14.2 222 355-601 173-416 (454)
93 1m9s_A Internalin B; cell inva 99.6 1.3E-15 4.6E-20 163.2 6.6 170 351-560 39-208 (605)
94 4glp_A Monocyte differentiatio 99.6 4.6E-15 1.6E-19 146.7 9.5 200 353-560 89-305 (310)
95 2fna_A Conserved hypothetical 99.6 6.8E-14 2.3E-18 141.3 18.0 273 6-311 31-356 (357)
96 1m9s_A Internalin B; cell inva 99.6 5.5E-15 1.9E-19 158.4 10.2 153 351-542 61-213 (605)
97 3goz_A Leucine-rich repeat-con 99.6 1.5E-15 5.2E-20 153.6 5.5 246 342-594 10-295 (362)
98 4ezg_A Putative uncharacterize 99.6 6E-15 2.1E-19 135.3 8.8 153 352-539 41-194 (197)
99 2v9t_B SLIT homolog 2 protein 99.5 2.3E-14 7.8E-19 133.8 10.7 130 355-486 32-164 (220)
100 4ay9_X Follicle-stimulating ho 99.5 2E-14 6.8E-19 144.6 10.4 225 358-603 12-243 (350)
101 2o6s_A Variable lymphocyte rec 99.5 2E-14 6.9E-19 133.1 9.6 124 359-486 11-136 (208)
102 2ell_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 126.6 10.8 137 353-491 22-164 (168)
103 2v9t_B SLIT homolog 2 protein 99.5 2.4E-14 8.2E-19 133.6 9.6 145 358-507 14-160 (220)
104 3e6j_A Variable lymphocyte rec 99.5 5.3E-14 1.8E-18 132.2 11.0 124 358-486 22-147 (229)
105 4g8a_A TOLL-like receptor 4; l 99.5 1.6E-13 5.3E-18 150.0 16.4 149 340-488 61-215 (635)
106 2xot_A Amphoterin-induced prot 99.5 2.1E-14 7.3E-19 145.0 8.7 128 358-489 21-151 (361)
107 1z7x_W Ribonuclease inhibitor; 99.5 6.2E-16 2.1E-20 162.2 -2.7 234 351-594 52-324 (461)
108 1xeu_A Internalin C; cellular 99.5 3.7E-14 1.3E-18 136.3 9.9 129 351-489 37-165 (263)
109 1xeu_A Internalin C; cellular 99.5 1.4E-14 4.7E-19 139.3 6.5 171 353-541 17-187 (263)
110 1w5s_A Origin recognition comp 99.5 1.3E-13 4.6E-18 142.1 14.4 274 4-295 49-371 (412)
111 2ca6_A RAN GTPase-activating p 99.5 3E-15 1E-19 153.0 1.3 236 356-597 10-288 (386)
112 2v70_A SLIT-2, SLIT homolog 2 99.5 1.4E-13 4.8E-18 128.4 10.3 139 344-487 24-166 (220)
113 1z7x_W Ribonuclease inhibitor; 99.5 2.2E-15 7.4E-20 158.1 -2.4 15 524-538 339-353 (461)
114 2je0_A Acidic leucine-rich nuc 99.5 1.2E-13 4E-18 120.4 8.8 128 353-482 15-148 (149)
115 3cvr_A Invasion plasmid antige 99.5 1.5E-13 5.2E-18 145.6 11.3 171 346-563 74-244 (571)
116 3e6j_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 128.8 10.5 139 343-487 31-172 (229)
117 4ezg_A Putative uncharacterize 99.5 2.9E-13 9.8E-18 124.1 11.6 130 351-487 62-194 (197)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 3.5E-13 1.2E-17 125.7 10.5 123 343-465 45-170 (220)
119 1dce_A Protein (RAB geranylger 99.4 7.5E-16 2.6E-20 164.1 -9.2 196 352-590 346-567 (567)
120 2o6s_A Variable lymphocyte rec 99.4 5.4E-13 1.8E-17 123.5 11.0 131 354-486 27-160 (208)
121 3ogk_B Coronatine-insensitive 99.4 5.8E-14 2E-18 152.1 4.8 204 351-558 160-412 (592)
122 1a9n_A U2A', U2A'; complex (nu 99.4 3.2E-13 1.1E-17 121.3 8.6 135 351-488 15-154 (176)
123 3goz_A Leucine-rich repeat-con 99.4 1.1E-13 3.7E-18 140.0 4.7 226 359-594 2-264 (362)
124 2wfh_A SLIT homolog 2 protein 99.4 1E-12 3.6E-17 119.6 10.8 115 344-461 23-139 (193)
125 3ogk_B Coronatine-insensitive 99.4 1.2E-13 3.9E-18 149.8 5.0 230 352-598 109-367 (592)
126 1w8a_A SLIT protein; signaling 99.4 6.8E-13 2.3E-17 120.9 9.0 126 358-487 11-139 (192)
127 4b8c_D Glucose-repressible alc 99.4 4.6E-13 1.6E-17 147.2 7.6 114 346-461 215-329 (727)
128 1w8a_A SLIT protein; signaling 99.4 1.9E-12 6.5E-17 117.9 9.9 117 344-463 21-141 (192)
129 2xot_A Amphoterin-induced prot 99.4 1.1E-12 3.6E-17 132.5 9.1 132 356-489 40-178 (361)
130 2v1u_A Cell division control p 99.3 2.3E-11 8E-16 124.1 18.6 274 3-295 42-351 (387)
131 2wfh_A SLIT homolog 2 protein 99.3 2.4E-12 8.2E-17 117.2 9.8 127 357-487 12-139 (193)
132 2ell_A Acidic leucine-rich nuc 99.3 1.6E-12 5.4E-17 115.8 7.2 115 344-460 39-159 (168)
133 2je0_A Acidic leucine-rich nuc 99.3 1.8E-12 6.2E-17 112.8 7.1 111 344-456 32-148 (149)
134 1a9n_A U2A', U2A'; complex (nu 99.3 1.4E-12 4.9E-17 117.0 6.4 139 373-539 14-153 (176)
135 1dce_A Protein (RAB geranylger 99.3 6E-12 2.1E-16 134.0 11.2 121 356-480 442-566 (567)
136 2o6r_A Variable lymphocyte rec 99.3 6.2E-12 2.1E-16 112.9 9.6 105 355-459 28-135 (177)
137 2p1m_B Transport inhibitor res 99.3 1.6E-12 5.4E-17 140.9 6.0 204 351-557 152-405 (594)
138 2p1m_B Transport inhibitor res 99.3 1.5E-12 5E-17 141.1 4.6 205 376-593 103-348 (594)
139 3g39_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 109.2 9.8 104 356-461 10-115 (170)
140 2o6r_A Variable lymphocyte rec 99.3 2.6E-11 8.8E-16 108.9 11.2 129 356-488 8-138 (177)
141 2r9u_A Variable lymphocyte rec 99.3 1.9E-11 6.5E-16 109.1 10.2 103 357-461 14-118 (174)
142 1fnn_A CDC6P, cell division co 99.2 2E-10 6.8E-15 117.3 18.5 272 6-296 45-352 (389)
143 4b8c_D Glucose-repressible alc 99.2 8.2E-13 2.8E-17 145.2 -0.2 158 365-559 211-369 (727)
144 1ds9_A Outer arm dynein; leuci 99.2 1.3E-13 4.5E-18 126.4 -6.1 117 367-487 37-153 (198)
145 2qby_B CDC6 homolog 3, cell di 99.2 2.4E-10 8.4E-15 116.3 17.1 264 4-295 44-339 (384)
146 1ds9_A Outer arm dynein; leuci 99.2 6.6E-13 2.2E-17 121.7 -2.3 127 350-480 43-180 (198)
147 2qby_A CDC6 homolog 1, cell di 99.1 4.4E-10 1.5E-14 114.5 14.0 273 4-295 44-348 (386)
148 1njg_A DNA polymerase III subu 99.1 4.7E-10 1.6E-14 106.3 12.5 162 6-188 46-230 (250)
149 2chg_A Replication factor C sm 99.1 7.4E-10 2.5E-14 103.4 12.4 161 6-186 39-204 (226)
150 3sb4_A Hypothetical leucine ri 99.0 3.7E-10 1.3E-14 112.3 8.5 99 354-457 48-157 (329)
151 2r9u_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 97.5 8.5 97 342-441 23-122 (174)
152 3sb4_A Hypothetical leucine ri 99.0 7.2E-10 2.5E-14 110.2 7.6 134 345-482 83-282 (329)
153 4fdw_A Leucine rich hypothetic 99.0 4.6E-09 1.6E-13 106.8 13.6 226 344-593 125-355 (401)
154 3g39_A Variable lymphocyte rec 99.0 1.3E-09 4.5E-14 96.8 8.1 106 379-488 10-116 (170)
155 2ifg_A High affinity nerve gro 98.9 1.3E-09 4.3E-14 109.3 9.0 104 358-463 11-118 (347)
156 1hqc_A RUVB; extended AAA-ATPa 98.9 4.7E-09 1.6E-13 104.1 10.0 153 5-189 38-214 (324)
157 1sxj_B Activator 1 37 kDa subu 98.8 1.7E-08 5.8E-13 99.9 10.3 161 6-185 43-209 (323)
158 3te6_A Regulatory protein SIR3 98.8 4.9E-08 1.7E-12 94.5 12.9 152 3-154 43-212 (318)
159 3un9_A NLR family member X1; l 98.7 1.2E-09 4.3E-14 109.9 0.6 133 354-487 71-224 (372)
160 3un9_A NLR family member X1; l 98.7 4.3E-09 1.5E-13 105.9 3.2 135 353-488 99-253 (372)
161 4fdw_A Leucine rich hypothetic 98.7 4.4E-08 1.5E-12 99.5 10.4 108 346-457 171-280 (401)
162 2ifg_A High affinity nerve gro 98.6 3E-08 1E-12 99.2 7.4 94 344-439 22-118 (347)
163 1iqp_A RFCS; clamp loader, ext 98.6 3.7E-08 1.3E-12 97.7 7.6 163 5-187 46-213 (327)
164 2chq_A Replication factor C sm 98.6 2.3E-07 8E-12 91.5 12.1 159 6-185 39-203 (319)
165 3bos_A Putative DNA replicatio 98.5 4.8E-08 1.6E-12 92.1 5.3 151 4-186 51-217 (242)
166 1d2n_A N-ethylmaleimide-sensit 98.5 9.4E-07 3.2E-11 84.9 14.5 175 4-208 63-264 (272)
167 1jr3_A DNA polymerase III subu 98.5 4E-07 1.4E-11 92.0 12.0 171 5-186 38-221 (373)
168 2z4s_A Chromosomal replication 98.4 3.9E-07 1.3E-11 93.6 9.0 161 5-185 130-305 (440)
169 1a5t_A Delta prime, HOLB; zinc 98.4 3E-06 1E-10 83.9 13.7 153 5-184 24-203 (334)
170 1xwi_A SKD1 protein; VPS4B, AA 98.4 7.5E-06 2.6E-10 80.4 16.0 159 5-187 45-224 (322)
171 3pvs_A Replication-associated 98.4 2E-06 6.9E-11 88.1 12.1 155 4-185 49-214 (447)
172 2ra8_A Uncharacterized protein 98.4 1.2E-06 4E-11 87.4 10.0 132 352-487 136-292 (362)
173 1sxj_D Activator 1 41 kDa subu 98.4 1.5E-06 5.2E-11 87.0 11.0 171 6-185 59-234 (353)
174 2qz4_A Paraplegin; AAA+, SPG7, 98.3 3.5E-06 1.2E-10 80.3 12.7 157 5-185 39-221 (262)
175 3h4m_A Proteasome-activating n 98.3 1.7E-06 5.8E-11 83.7 10.1 156 4-185 50-230 (285)
176 1sxj_A Activator 1 95 kDa subu 98.3 1.6E-06 5.4E-11 91.2 10.1 165 5-185 77-252 (516)
177 1l8q_A Chromosomal replication 98.3 2E-06 6.7E-11 85.0 10.0 153 5-182 37-204 (324)
178 3d8b_A Fidgetin-like protein 1 98.3 4.8E-06 1.6E-10 83.1 12.9 159 4-187 116-296 (357)
179 2ra8_A Uncharacterized protein 98.3 2E-06 6.8E-11 85.7 9.6 63 416-483 164-228 (362)
180 3eie_A Vacuolar protein sortin 98.3 4.7E-06 1.6E-10 82.0 11.7 157 5-186 51-228 (322)
181 3pfi_A Holliday junction ATP-d 98.3 6.3E-06 2.2E-10 81.8 12.5 148 5-186 55-227 (338)
182 3syl_A Protein CBBX; photosynt 98.2 2.1E-06 7.3E-11 84.1 8.3 148 5-175 67-236 (309)
183 2qp9_X Vacuolar protein sortin 98.2 7.7E-06 2.6E-10 81.5 12.1 156 6-186 85-261 (355)
184 3vfd_A Spastin; ATPase, microt 98.2 1.5E-05 5E-10 80.8 13.8 157 5-186 148-326 (389)
185 3uk6_A RUVB-like 2; hexameric 98.2 5.7E-06 2E-10 83.2 10.8 47 135-184 254-301 (368)
186 2zan_A Vacuolar protein sortin 98.2 3.3E-05 1.1E-09 79.4 16.4 158 5-186 167-345 (444)
187 1jbk_A CLPB protein; beta barr 98.2 1.5E-06 5.3E-11 78.4 5.6 131 4-149 42-194 (195)
188 3b9p_A CG5977-PA, isoform A; A 98.2 3.1E-05 1.1E-09 75.2 15.0 156 5-185 54-232 (297)
189 3u61_B DNA polymerase accessor 98.2 6.3E-06 2.1E-10 81.3 10.1 151 5-182 48-212 (324)
190 1sxj_E Activator 1 40 kDa subu 98.1 4.7E-06 1.6E-10 83.4 8.9 99 85-186 133-237 (354)
191 1io0_A Tropomodulin; LRR prote 98.1 1.2E-06 4.1E-11 78.6 3.4 87 351-437 32-136 (185)
192 1sxj_C Activator 1 40 kDa subu 98.1 1.1E-05 3.7E-10 80.2 10.5 155 7-182 48-208 (340)
193 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5E-11 76.0 2.8 83 377-459 60-150 (176)
194 3e4g_A ATP synthase subunit S, 98.0 2.9E-06 9.9E-11 74.1 4.4 90 345-435 52-150 (176)
195 4b4t_J 26S protease regulatory 98.0 0.00012 4E-09 72.8 15.4 148 6-179 183-354 (405)
196 1io0_A Tropomodulin; LRR prote 98.0 5.2E-06 1.8E-10 74.4 5.3 116 372-488 30-165 (185)
197 3n70_A Transport activator; si 98.0 5.5E-06 1.9E-10 70.9 4.6 89 6-123 25-115 (145)
198 4b4t_L 26S protease subunit RP 97.9 7.3E-05 2.5E-09 75.5 12.7 149 5-179 215-387 (437)
199 3cf0_A Transitional endoplasmi 97.9 0.0001 3.6E-09 71.5 13.1 151 5-181 49-223 (301)
200 4b4t_K 26S protease regulatory 97.9 5.3E-05 1.8E-09 76.4 11.1 149 5-179 206-379 (428)
201 4fs7_A Uncharacterized protein 97.9 4.5E-05 1.5E-09 77.4 10.6 220 346-592 153-375 (394)
202 2gno_A DNA polymerase III, gam 97.9 5.2E-05 1.8E-09 73.4 10.1 131 5-153 18-152 (305)
203 4b4t_I 26S protease regulatory 97.8 0.00013 4.4E-09 72.7 12.5 149 5-179 216-388 (437)
204 4b4t_H 26S protease regulatory 97.8 0.00016 5.3E-09 72.9 12.6 149 5-179 243-415 (467)
205 2w58_A DNAI, primosome compone 97.8 3.2E-05 1.1E-09 70.3 6.9 97 6-122 55-157 (202)
206 1in4_A RUVB, holliday junction 97.8 0.0004 1.4E-08 68.4 15.0 47 135-184 175-221 (334)
207 3t15_A Ribulose bisphosphate c 97.8 0.0002 7E-09 69.1 12.4 27 4-30 35-61 (293)
208 3rw6_A Nuclear RNA export fact 97.7 2.5E-05 8.4E-10 73.7 5.1 80 398-480 167-257 (267)
209 4b4t_M 26S protease regulatory 97.7 0.00015 5.2E-09 73.1 11.0 149 5-179 215-387 (434)
210 1lv7_A FTSH; alpha/beta domain 97.7 0.00012 4.1E-09 69.3 9.8 153 6-184 46-223 (257)
211 3ec2_A DNA replication protein 97.7 1.4E-05 4.8E-10 71.2 2.9 99 5-122 38-141 (180)
212 2r62_A Cell division protease 97.7 3.9E-05 1.3E-09 73.3 5.7 127 7-155 46-198 (268)
213 4fs7_A Uncharacterized protein 97.7 0.00011 3.6E-09 74.7 9.1 41 346-387 62-103 (394)
214 1ofh_A ATP-dependent HSL prote 97.7 0.00028 9.5E-09 68.8 11.8 36 5-46 50-85 (310)
215 3rw6_A Nuclear RNA export fact 97.6 3.6E-05 1.2E-09 72.5 4.0 78 352-430 167-257 (267)
216 3pxg_A Negative regulator of g 97.6 0.00035 1.2E-08 72.2 11.7 147 6-175 202-361 (468)
217 2ce7_A Cell division protein F 97.6 0.00036 1.2E-08 71.6 11.5 148 6-179 50-221 (476)
218 4fcw_A Chaperone protein CLPB; 97.6 0.00019 6.6E-09 70.0 9.2 84 6-98 48-131 (311)
219 3m6a_A ATP-dependent protease 97.5 0.00067 2.3E-08 71.4 12.9 133 5-153 108-266 (543)
220 1ojl_A Transcriptional regulat 97.5 0.00019 6.7E-09 69.6 7.9 40 5-47 25-64 (304)
221 2bjv_A PSP operon transcriptio 97.5 0.0001 3.5E-09 70.1 5.8 39 6-47 30-68 (265)
222 3hu3_A Transitional endoplasmi 97.5 0.00083 2.8E-08 69.4 12.5 155 5-185 238-414 (489)
223 2p65_A Hypothetical protein PF 97.4 9.6E-05 3.3E-09 65.9 4.8 27 4-30 42-68 (187)
224 2c9o_A RUVB-like 1; hexameric 97.3 0.00061 2.1E-08 70.2 9.8 44 135-181 361-405 (456)
225 3cf2_A TER ATPase, transitiona 97.3 0.00068 2.3E-08 73.8 9.7 149 5-179 238-407 (806)
226 1qvr_A CLPB protein; coiled co 97.3 0.00024 8.2E-09 79.4 6.2 155 5-175 191-368 (854)
227 3pxi_A Negative regulator of g 97.2 0.0015 5.2E-08 72.1 11.9 128 5-155 201-340 (758)
228 4gt6_A Cell surface protein; l 97.2 0.0029 9.9E-08 63.9 12.9 108 346-456 54-168 (394)
229 3pxi_A Negative regulator of g 97.2 0.00025 8.7E-09 78.3 5.2 37 7-46 523-559 (758)
230 2cvh_A DNA repair and recombin 97.2 0.0012 4.2E-08 60.5 8.9 44 5-54 20-63 (220)
231 4gt6_A Cell surface protein; l 97.1 0.0013 4.4E-08 66.5 9.1 131 346-484 256-388 (394)
232 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00043 1.5E-08 66.3 5.0 33 6-44 124-156 (331)
233 3co5_A Putative two-component 97.0 0.00011 3.9E-09 62.4 0.2 24 6-29 28-51 (143)
234 1r6b_X CLPA protein; AAA+, N-t 97.0 0.002 6.7E-08 71.2 10.1 133 5-153 207-362 (758)
235 2x8a_A Nuclear valosin-contain 96.9 0.0034 1.2E-07 59.7 10.0 123 8-154 47-192 (274)
236 1jr3_D DNA polymerase III, del 96.9 0.005 1.7E-07 60.8 11.5 155 5-185 18-184 (343)
237 1v5w_A DMC1, meiotic recombina 96.9 0.0042 1.4E-07 61.2 10.8 57 5-62 122-181 (343)
238 3hr8_A Protein RECA; alpha and 96.9 0.0019 6.5E-08 63.4 7.9 87 5-99 61-152 (356)
239 3io5_A Recombination and repai 96.9 0.0025 8.6E-08 60.7 8.4 87 7-99 30-124 (333)
240 2z43_A DNA repair and recombin 96.8 0.0023 7.9E-08 62.6 8.1 93 5-98 107-215 (324)
241 1ixz_A ATP-dependent metallopr 96.8 0.0016 5.4E-08 61.4 6.6 146 8-179 52-221 (254)
242 2i1q_A DNA repair and recombin 96.8 0.0028 9.6E-08 62.0 8.6 93 5-98 98-216 (322)
243 2kjq_A DNAA-related protein; s 96.8 0.00095 3.2E-08 57.0 4.4 39 5-46 36-74 (149)
244 1n0w_A DNA repair protein RAD5 96.8 0.0037 1.3E-07 58.3 8.9 93 5-98 24-131 (243)
245 1iy2_A ATP-dependent metallopr 96.7 0.0023 7.7E-08 61.2 6.9 146 8-179 76-245 (278)
246 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00099 3.4E-08 61.8 4.3 38 6-46 24-61 (235)
247 2dhr_A FTSH; AAA+ protein, hex 96.7 0.0054 1.8E-07 63.3 9.9 143 8-179 67-236 (499)
248 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0013 4.4E-08 72.8 4.7 81 6-98 489-569 (758)
249 1xp8_A RECA protein, recombina 96.6 0.004 1.4E-07 61.6 7.6 86 5-98 74-164 (366)
250 2zr9_A Protein RECA, recombina 96.5 0.0039 1.3E-07 61.4 7.2 86 5-98 61-151 (349)
251 4h09_A Hypothetical leucine ri 96.5 0.0038 1.3E-07 62.6 7.3 130 347-482 209-341 (379)
252 2qgz_A Helicase loader, putati 96.4 0.0036 1.2E-07 60.6 6.3 37 5-44 152-189 (308)
253 1u94_A RECA protein, recombina 96.4 0.0041 1.4E-07 61.4 6.7 86 5-98 63-153 (356)
254 1qvr_A CLPB protein; coiled co 96.4 0.0098 3.4E-07 66.4 10.1 39 6-47 589-627 (854)
255 2b8t_A Thymidine kinase; deoxy 96.4 0.001 3.5E-08 60.7 1.7 110 3-123 10-125 (223)
256 3fwy_A Light-independent proto 96.4 0.0032 1.1E-07 61.0 5.3 41 3-46 46-86 (314)
257 3bh0_A DNAB-like replicative h 96.3 0.011 3.9E-07 57.3 9.2 51 5-60 68-118 (315)
258 3ice_A Transcription terminati 96.3 0.0047 1.6E-07 60.5 6.2 42 5-47 174-215 (422)
259 1vma_A Cell division protein F 96.3 0.01 3.5E-07 57.1 8.2 41 3-46 102-142 (306)
260 1qhx_A CPT, protein (chloramph 96.3 0.0023 7.7E-08 56.5 3.4 25 6-30 4-28 (178)
261 3rfe_A Platelet glycoprotein I 96.3 0.0037 1.3E-07 51.8 4.5 55 404-460 11-67 (130)
262 4a74_A DNA repair and recombin 96.2 0.013 4.6E-07 53.8 8.8 45 5-49 25-72 (231)
263 3lda_A DNA repair protein RAD5 96.2 0.012 4.1E-07 58.9 8.9 93 5-98 178-285 (400)
264 3cf2_A TER ATPase, transitiona 96.2 0.0053 1.8E-07 66.8 6.4 148 6-179 512-683 (806)
265 3trf_A Shikimate kinase, SK; a 96.2 0.0026 8.7E-08 56.6 3.3 27 4-30 4-30 (185)
266 3kb2_A SPBC2 prophage-derived 96.2 0.0026 8.7E-08 55.7 3.2 25 6-30 2-26 (173)
267 3tau_A Guanylate kinase, GMP k 96.1 0.0033 1.1E-07 57.1 3.8 29 2-30 5-33 (208)
268 2px0_A Flagellar biosynthesis 96.1 0.0088 3E-07 57.4 6.9 42 3-46 103-144 (296)
269 1ls1_A Signal recognition part 96.1 0.011 3.8E-07 56.7 7.3 89 4-95 97-189 (295)
270 1ypw_A Transitional endoplasmi 96.0 0.016 5.6E-07 63.9 9.1 148 5-179 238-407 (806)
271 3dm5_A SRP54, signal recogniti 96.0 0.011 3.9E-07 59.5 7.1 39 4-45 99-137 (443)
272 3lw7_A Adenylate kinase relate 96.0 0.0036 1.2E-07 54.9 3.2 23 6-29 2-24 (179)
273 1ex7_A Guanylate kinase; subst 95.9 0.0034 1.2E-07 55.5 2.9 25 6-30 2-26 (186)
274 3vaa_A Shikimate kinase, SK; s 95.9 0.004 1.4E-07 56.1 3.4 26 5-30 25-50 (199)
275 1ly1_A Polynucleotide kinase; 95.9 0.0045 1.5E-07 54.6 3.6 22 6-27 3-24 (181)
276 4h09_A Hypothetical leucine ri 95.9 0.01 3.4E-07 59.5 6.5 105 373-482 212-318 (379)
277 1zp6_A Hypothetical protein AT 95.9 0.0048 1.7E-07 55.0 3.7 26 4-29 8-33 (191)
278 1sky_E F1-ATPase, F1-ATP synth 95.9 0.02 6.7E-07 58.0 8.3 91 6-98 152-257 (473)
279 3t61_A Gluconokinase; PSI-biol 95.9 0.004 1.4E-07 56.2 3.0 25 5-29 18-42 (202)
280 1uf9_A TT1252 protein; P-loop, 95.9 0.0053 1.8E-07 55.4 3.8 28 1-28 4-31 (203)
281 2xxa_A Signal recognition part 95.8 0.023 7.7E-07 57.6 8.8 43 3-47 98-140 (433)
282 1um8_A ATP-dependent CLP prote 95.8 0.0064 2.2E-07 60.9 4.8 26 5-30 72-97 (376)
283 2rhm_A Putative kinase; P-loop 95.8 0.0051 1.8E-07 54.9 3.7 26 4-29 4-29 (193)
284 1nks_A Adenylate kinase; therm 95.8 0.0046 1.6E-07 55.2 3.4 25 6-30 2-26 (194)
285 3uie_A Adenylyl-sulfate kinase 95.8 0.0054 1.9E-07 55.2 3.8 28 3-30 23-50 (200)
286 1kgd_A CASK, peripheral plasma 95.8 0.0052 1.8E-07 54.3 3.5 26 5-30 5-30 (180)
287 1kag_A SKI, shikimate kinase I 95.8 0.0041 1.4E-07 54.5 2.8 25 6-30 5-29 (173)
288 1ukz_A Uridylate kinase; trans 95.8 0.0066 2.3E-07 54.8 4.2 27 3-29 13-39 (203)
289 3umf_A Adenylate kinase; rossm 95.8 0.0059 2E-07 55.4 3.8 27 4-30 28-54 (217)
290 1kht_A Adenylate kinase; phosp 95.8 0.0049 1.7E-07 54.9 3.2 25 6-30 4-28 (192)
291 3iij_A Coilin-interacting nucl 95.7 0.0045 1.5E-07 54.7 2.8 26 5-30 11-36 (180)
292 2r2a_A Uncharacterized protein 95.7 0.025 8.4E-07 50.6 7.7 23 7-29 7-29 (199)
293 1j8m_F SRP54, signal recogniti 95.7 0.02 6.9E-07 54.9 7.5 89 5-96 98-190 (297)
294 2qor_A Guanylate kinase; phosp 95.7 0.0052 1.8E-07 55.6 3.0 26 4-29 11-36 (204)
295 4a1f_A DNAB helicase, replicat 95.7 0.029 1E-06 54.5 8.4 51 5-60 46-96 (338)
296 2ze6_A Isopentenyl transferase 95.7 0.006 2.1E-07 57.2 3.5 25 6-30 2-26 (253)
297 1pzn_A RAD51, DNA repair and r 95.6 0.029 1E-06 55.2 8.6 45 5-49 131-178 (349)
298 2c95_A Adenylate kinase 1; tra 95.6 0.0064 2.2E-07 54.4 3.4 27 4-30 8-34 (196)
299 4eun_A Thermoresistant glucoki 95.6 0.0064 2.2E-07 54.8 3.4 26 4-29 28-53 (200)
300 1zuh_A Shikimate kinase; alpha 95.6 0.0063 2.1E-07 53.0 3.2 27 4-30 6-32 (168)
301 1knq_A Gluconate kinase; ALFA/ 95.6 0.0085 2.9E-07 52.6 3.9 25 5-29 8-32 (175)
302 1via_A Shikimate kinase; struc 95.6 0.0054 1.8E-07 53.9 2.6 25 6-30 5-29 (175)
303 1y63_A LMAJ004144AAA protein; 95.6 0.0078 2.7E-07 53.3 3.7 24 5-28 10-33 (184)
304 3kl4_A SRP54, signal recogniti 95.6 0.023 7.7E-07 57.3 7.4 41 3-46 95-135 (433)
305 2iyv_A Shikimate kinase, SK; t 95.5 0.005 1.7E-07 54.5 2.4 25 6-30 3-27 (184)
306 3ney_A 55 kDa erythrocyte memb 95.5 0.0078 2.7E-07 53.6 3.6 27 4-30 18-44 (197)
307 1tev_A UMP-CMP kinase; ploop, 95.5 0.0074 2.5E-07 53.9 3.5 26 5-30 3-28 (196)
308 3cm0_A Adenylate kinase; ATP-b 95.5 0.0077 2.6E-07 53.4 3.6 25 5-29 4-28 (186)
309 2bwj_A Adenylate kinase 5; pho 95.5 0.0069 2.4E-07 54.4 3.2 26 5-30 12-37 (199)
310 1pgv_A TMD-1, tropomodulin TMD 95.5 0.02 6.8E-07 50.8 6.0 64 351-414 37-111 (197)
311 3tr0_A Guanylate kinase, GMP k 95.5 0.008 2.8E-07 54.2 3.5 25 5-29 7-31 (205)
312 3a00_A Guanylate kinase, GMP k 95.5 0.0068 2.3E-07 53.9 2.9 25 6-30 2-26 (186)
313 3c8u_A Fructokinase; YP_612366 95.4 0.008 2.7E-07 54.5 3.4 28 3-30 20-47 (208)
314 1e6c_A Shikimate kinase; phosp 95.4 0.0063 2.1E-07 53.2 2.6 25 6-30 3-27 (173)
315 2plr_A DTMP kinase, probable t 95.4 0.0088 3E-07 54.3 3.7 26 5-30 4-29 (213)
316 1xjc_A MOBB protein homolog; s 95.4 0.0077 2.6E-07 52.1 3.1 28 3-30 2-29 (169)
317 2jaq_A Deoxyguanosine kinase; 95.4 0.008 2.7E-07 54.2 3.4 24 7-30 2-25 (205)
318 2cdn_A Adenylate kinase; phosp 95.4 0.0097 3.3E-07 53.6 3.7 26 5-30 20-45 (201)
319 2j41_A Guanylate kinase; GMP, 95.4 0.0094 3.2E-07 53.8 3.6 25 5-29 6-30 (207)
320 1qf9_A UMP/CMP kinase, protein 95.4 0.0089 3.1E-07 53.3 3.4 26 5-30 6-31 (194)
321 2bbw_A Adenylate kinase 4, AK4 95.3 0.0086 3E-07 55.9 3.4 26 5-30 27-52 (246)
322 2yvu_A Probable adenylyl-sulfa 95.3 0.011 3.7E-07 52.5 3.9 28 4-31 12-39 (186)
323 2ck3_D ATP synthase subunit be 95.3 0.043 1.5E-06 55.4 8.5 92 5-98 153-265 (482)
324 2bdt_A BH3686; alpha-beta prot 95.3 0.01 3.4E-07 52.8 3.6 23 6-28 3-25 (189)
325 2qt1_A Nicotinamide riboside k 95.3 0.011 3.7E-07 53.5 3.9 26 4-29 20-45 (207)
326 1pgv_A TMD-1, tropomodulin TMD 95.3 0.024 8.2E-07 50.3 5.9 112 374-486 37-169 (197)
327 2ffh_A Protein (FFH); SRP54, s 95.3 0.06 2.1E-06 54.1 9.5 40 4-46 97-136 (425)
328 1aky_A Adenylate kinase; ATP:A 95.3 0.0095 3.3E-07 54.5 3.4 27 4-30 3-29 (220)
329 2q6t_A DNAB replication FORK h 95.3 0.044 1.5E-06 56.0 8.7 52 5-60 200-251 (444)
330 2vli_A Antibiotic resistance p 95.3 0.0066 2.3E-07 53.7 2.2 26 5-30 5-30 (183)
331 2pt5_A Shikimate kinase, SK; a 95.3 0.0097 3.3E-07 51.7 3.3 24 7-30 2-25 (168)
332 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.011 3.7E-07 55.8 3.8 26 5-30 4-29 (260)
333 3crm_A TRNA delta(2)-isopenten 95.3 0.02 6.8E-07 55.2 5.6 26 5-30 5-30 (323)
334 1uj2_A Uridine-cytidine kinase 95.3 0.011 3.8E-07 55.4 3.8 27 4-30 21-47 (252)
335 3asz_A Uridine kinase; cytidin 95.3 0.011 3.6E-07 53.8 3.6 27 4-30 5-31 (211)
336 4e22_A Cytidylate kinase; P-lo 95.2 0.012 4E-07 55.2 3.9 27 4-30 26-52 (252)
337 1nn5_A Similar to deoxythymidy 95.2 0.01 3.5E-07 53.9 3.5 26 5-30 9-34 (215)
338 2pbr_A DTMP kinase, thymidylat 95.2 0.01 3.4E-07 53.0 3.3 24 7-30 2-25 (195)
339 1gvn_B Zeta; postsegregational 95.2 0.01 3.6E-07 56.7 3.5 26 4-29 32-57 (287)
340 1odf_A YGR205W, hypothetical 3 95.2 0.012 4.1E-07 56.2 4.0 44 3-46 29-72 (290)
341 2wwf_A Thymidilate kinase, put 95.2 0.01 3.5E-07 53.9 3.3 26 5-30 10-35 (212)
342 1cke_A CK, MSSA, protein (cyti 95.2 0.0099 3.4E-07 54.6 3.3 25 5-29 5-29 (227)
343 1a7j_A Phosphoribulokinase; tr 95.2 0.0053 1.8E-07 58.8 1.4 43 1-46 1-43 (290)
344 2v54_A DTMP kinase, thymidylat 95.2 0.012 4.2E-07 52.9 3.7 25 5-29 4-28 (204)
345 3d3q_A TRNA delta(2)-isopenten 95.2 0.019 6.4E-07 55.8 5.1 25 6-30 8-32 (340)
346 1jjv_A Dephospho-COA kinase; P 95.1 0.012 4E-07 53.3 3.5 22 6-27 3-24 (206)
347 3cmu_A Protein RECA, recombina 95.1 0.021 7E-07 68.0 6.3 86 5-98 1427-1517(2050)
348 3end_A Light-independent proto 95.1 0.024 8.2E-07 54.9 5.9 44 3-49 39-82 (307)
349 2if2_A Dephospho-COA kinase; a 95.1 0.011 3.7E-07 53.3 3.3 22 6-27 2-23 (204)
350 4gp7_A Metallophosphoesterase; 95.1 0.011 3.8E-07 51.6 3.2 23 4-26 8-30 (171)
351 3fb4_A Adenylate kinase; psych 95.1 0.011 3.7E-07 53.9 3.3 24 7-30 2-25 (216)
352 3dl0_A Adenylate kinase; phosp 95.1 0.012 4E-07 53.7 3.4 24 7-30 2-25 (216)
353 2z0h_A DTMP kinase, thymidylat 95.1 0.011 3.9E-07 52.8 3.3 24 7-30 2-25 (197)
354 1zd8_A GTP:AMP phosphotransfer 95.1 0.011 3.8E-07 54.4 3.3 26 5-30 7-32 (227)
355 2grj_A Dephospho-COA kinase; T 95.1 0.014 4.9E-07 51.9 3.9 26 4-29 11-36 (192)
356 3tlx_A Adenylate kinase 2; str 95.1 0.013 4.4E-07 54.6 3.7 27 4-30 28-54 (243)
357 1ye8_A Protein THEP1, hypothet 95.1 0.012 4.1E-07 51.7 3.3 24 7-30 2-25 (178)
358 1rz3_A Hypothetical protein rb 95.1 0.014 4.8E-07 52.5 3.8 27 4-30 21-47 (201)
359 1g5t_A COB(I)alamin adenosyltr 95.0 0.0061 2.1E-07 53.9 1.2 116 6-125 29-164 (196)
360 1lvg_A Guanylate kinase, GMP k 95.0 0.0099 3.4E-07 53.4 2.6 25 5-29 4-28 (198)
361 1q57_A DNA primase/helicase; d 95.0 0.074 2.5E-06 55.4 9.7 51 5-59 242-292 (503)
362 1fx0_B ATP synthase beta chain 95.0 0.048 1.6E-06 55.3 7.7 91 6-98 166-278 (498)
363 1rj9_A FTSY, signal recognitio 95.0 0.019 6.4E-07 55.3 4.6 27 4-30 101-127 (304)
364 1zak_A Adenylate kinase; ATP:A 95.0 0.011 3.9E-07 54.1 2.9 27 4-30 4-30 (222)
365 3foz_A TRNA delta(2)-isopenten 95.0 0.028 9.6E-07 53.5 5.6 26 5-30 10-35 (316)
366 3e70_C DPA, signal recognition 94.9 0.083 2.9E-06 51.3 9.1 57 3-62 127-184 (328)
367 1htw_A HI0065; nucleotide-bind 94.9 0.018 6.2E-07 49.4 3.8 26 4-29 32-57 (158)
368 2f6r_A COA synthase, bifunctio 94.9 0.017 5.7E-07 55.1 3.9 25 3-27 73-97 (281)
369 3exa_A TRNA delta(2)-isopenten 94.9 0.016 5.5E-07 55.3 3.6 26 5-30 3-28 (322)
370 3sr0_A Adenylate kinase; phosp 94.9 0.015 5E-07 52.5 3.3 24 7-30 2-25 (206)
371 2jeo_A Uridine-cytidine kinase 94.8 0.017 5.8E-07 53.8 3.8 25 5-29 25-49 (245)
372 1m7g_A Adenylylsulfate kinase; 94.8 0.018 6E-07 52.3 3.8 27 4-30 24-50 (211)
373 1znw_A Guanylate kinase, GMP k 94.8 0.016 5.4E-07 52.4 3.4 27 4-30 19-45 (207)
374 3zvl_A Bifunctional polynucleo 94.8 0.026 9E-07 57.1 5.4 27 3-29 256-282 (416)
375 2pez_A Bifunctional 3'-phospho 94.8 0.018 6.1E-07 50.7 3.6 27 4-30 4-30 (179)
376 1s96_A Guanylate kinase, GMP k 94.8 0.017 5.9E-07 52.6 3.6 27 4-30 15-41 (219)
377 3aez_A Pantothenate kinase; tr 94.8 0.017 6E-07 55.7 3.8 42 3-45 88-129 (312)
378 1tue_A Replication protein E1; 94.8 0.014 4.7E-07 51.9 2.8 25 6-30 59-83 (212)
379 1z6g_A Guanylate kinase; struc 94.8 0.014 4.7E-07 53.3 2.8 25 5-29 23-47 (218)
380 2r6a_A DNAB helicase, replicat 94.7 0.07 2.4E-06 54.7 8.5 50 5-58 203-252 (454)
381 1gtv_A TMK, thymidylate kinase 94.7 0.0084 2.9E-07 54.5 1.4 25 6-30 1-25 (214)
382 2j37_W Signal recognition part 94.7 0.092 3.1E-06 54.1 9.2 41 3-46 99-139 (504)
383 3a8t_A Adenylate isopentenyltr 94.7 0.017 6E-07 55.7 3.6 26 5-30 40-65 (339)
384 3r20_A Cytidylate kinase; stru 94.7 0.016 5.6E-07 53.1 3.3 26 5-30 9-34 (233)
385 1zu4_A FTSY; GTPase, signal re 94.7 0.025 8.5E-07 54.9 4.7 41 3-46 103-143 (320)
386 3rfe_A Platelet glycoprotein I 94.7 0.051 1.7E-06 44.8 5.9 54 358-413 11-67 (130)
387 2p5t_B PEZT; postsegregational 94.7 0.014 4.8E-07 54.7 2.8 27 4-30 31-57 (253)
388 2zts_A Putative uncharacterize 94.7 0.038 1.3E-06 51.4 5.8 47 6-56 31-77 (251)
389 2r8r_A Sensor protein; KDPD, P 94.7 0.054 1.9E-06 49.0 6.4 40 7-49 8-47 (228)
390 1cp2_A CP2, nitrogenase iron p 94.6 0.035 1.2E-06 52.4 5.5 40 6-48 2-41 (269)
391 2qmh_A HPR kinase/phosphorylas 94.6 0.02 6.7E-07 50.6 3.3 27 4-30 33-59 (205)
392 3be4_A Adenylate kinase; malar 94.6 0.015 5.2E-07 53.0 2.7 25 6-30 6-30 (217)
393 1vht_A Dephospho-COA kinase; s 94.6 0.022 7.7E-07 51.9 3.9 23 5-27 4-26 (218)
394 1ak2_A Adenylate kinase isoenz 94.6 0.02 6.8E-07 52.9 3.5 26 5-30 16-41 (233)
395 2xb4_A Adenylate kinase; ATP-b 94.6 0.018 6.3E-07 52.7 3.3 23 7-29 2-24 (223)
396 3tqc_A Pantothenate kinase; bi 94.6 0.023 7.9E-07 54.9 4.0 42 4-46 91-132 (321)
397 3ake_A Cytidylate kinase; CMP 94.5 0.019 6.6E-07 51.8 3.3 24 7-30 4-27 (208)
398 1e4v_A Adenylate kinase; trans 94.5 0.019 6.5E-07 52.2 3.2 23 7-29 2-24 (214)
399 3bgw_A DNAB-like replicative h 94.5 0.077 2.6E-06 54.0 8.0 40 5-47 197-236 (444)
400 2afh_E Nitrogenase iron protei 94.5 0.039 1.3E-06 52.8 5.5 41 5-48 2-42 (289)
401 4eaq_A DTMP kinase, thymidylat 94.4 0.044 1.5E-06 50.3 5.5 27 4-30 25-51 (229)
402 3l0o_A Transcription terminati 94.4 0.021 7E-07 55.9 3.2 42 5-47 175-216 (427)
403 2dr3_A UPF0273 protein PH0284; 94.4 0.028 9.6E-07 52.2 4.1 38 6-46 24-61 (247)
404 3nwj_A ATSK2; P loop, shikimat 94.4 0.019 6.4E-07 53.5 2.8 26 5-30 48-73 (250)
405 3lv8_A DTMP kinase, thymidylat 94.4 0.053 1.8E-06 49.9 5.8 37 5-43 27-63 (236)
406 4tmk_A Protein (thymidylate ki 94.3 0.054 1.9E-06 49.0 5.8 37 5-43 3-39 (213)
407 3iqw_A Tail-anchored protein t 94.3 0.052 1.8E-06 52.9 6.0 44 4-50 15-58 (334)
408 1np6_A Molybdopterin-guanine d 94.3 0.024 8.2E-07 49.5 3.3 26 5-30 6-31 (174)
409 3lnc_A Guanylate kinase, GMP k 94.2 0.017 5.7E-07 53.3 2.2 25 5-29 27-52 (231)
410 1cr0_A DNA primase/helicase; R 94.2 0.066 2.3E-06 51.4 6.5 40 5-46 35-74 (296)
411 3cmu_A Protein RECA, recombina 94.2 0.068 2.3E-06 63.7 7.5 87 5-99 383-474 (2050)
412 3io3_A DEHA2D07832P; chaperone 94.2 0.055 1.9E-06 53.0 5.8 43 4-49 17-61 (348)
413 1sq5_A Pantothenate kinase; P- 94.1 0.031 1.1E-06 54.1 3.9 43 3-46 78-120 (308)
414 2hf9_A Probable hydrogenase ni 94.1 0.032 1.1E-06 51.1 3.8 27 4-30 37-63 (226)
415 3kjh_A CO dehydrogenase/acetyl 94.1 0.057 1.9E-06 50.3 5.6 42 8-52 3-44 (254)
416 3b9q_A Chloroplast SRP recepto 94.1 0.029 9.9E-07 53.9 3.5 27 4-30 99-125 (302)
417 2f1r_A Molybdopterin-guanine d 94.1 0.018 6E-07 50.2 1.8 26 6-31 3-28 (171)
418 1nlf_A Regulatory protein REPA 94.1 0.045 1.5E-06 52.1 4.9 43 5-47 30-79 (279)
419 4edh_A DTMP kinase, thymidylat 94.0 0.091 3.1E-06 47.5 6.6 32 5-38 6-37 (213)
420 2ehv_A Hypothetical protein PH 94.0 0.029 9.8E-07 52.3 3.4 23 5-27 30-52 (251)
421 3fkq_A NTRC-like two-domain pr 94.0 0.053 1.8E-06 54.0 5.5 44 3-49 141-185 (373)
422 2i3b_A HCR-ntpase, human cance 93.9 0.027 9.1E-07 50.0 2.7 25 6-30 2-26 (189)
423 1yrb_A ATP(GTP)binding protein 93.9 0.041 1.4E-06 51.7 4.2 27 4-30 13-39 (262)
424 3eph_A TRNA isopentenyltransfe 93.9 0.031 1.1E-06 55.3 3.4 26 5-30 2-27 (409)
425 3tif_A Uncharacterized ABC tra 93.8 0.032 1.1E-06 51.5 3.2 26 4-29 30-55 (235)
426 2ocp_A DGK, deoxyguanosine kin 93.8 0.037 1.3E-06 51.3 3.7 26 5-30 2-27 (241)
427 4dzz_A Plasmid partitioning pr 93.8 0.058 2E-06 48.4 5.0 43 6-51 2-45 (206)
428 2wsm_A Hydrogenase expression/ 93.8 0.037 1.3E-06 50.4 3.7 27 4-30 29-55 (221)
429 1ltq_A Polynucleotide kinase; 93.8 0.035 1.2E-06 53.5 3.6 24 6-29 3-26 (301)
430 2onk_A Molybdate/tungstate ABC 93.8 0.036 1.2E-06 51.3 3.5 24 6-29 25-48 (240)
431 2ga8_A Hypothetical 39.9 kDa p 93.6 0.045 1.5E-06 53.3 3.9 27 4-30 23-49 (359)
432 3zq6_A Putative arsenical pump 93.6 0.092 3.2E-06 51.1 6.3 46 5-53 14-59 (324)
433 2r44_A Uncharacterized protein 93.6 0.073 2.5E-06 52.0 5.6 130 6-155 47-200 (331)
434 3cmw_A Protein RECA, recombina 93.6 0.056 1.9E-06 63.5 5.4 86 5-98 1082-1172(1706)
435 3ld9_A DTMP kinase, thymidylat 93.6 0.067 2.3E-06 48.6 4.8 28 4-31 20-47 (223)
436 1p5z_B DCK, deoxycytidine kina 93.6 0.027 9.3E-07 53.1 2.3 28 3-30 22-49 (263)
437 2cbz_A Multidrug resistance-as 93.5 0.039 1.3E-06 51.0 3.2 26 5-30 31-56 (237)
438 2pcj_A ABC transporter, lipopr 93.5 0.032 1.1E-06 51.1 2.6 25 5-29 30-54 (224)
439 2lkc_A Translation initiation 93.5 0.052 1.8E-06 47.3 4.0 28 2-29 5-32 (178)
440 4hlc_A DTMP kinase, thymidylat 93.5 0.074 2.5E-06 47.8 4.9 25 6-30 3-27 (205)
441 2og2_A Putative signal recogni 93.5 0.041 1.4E-06 54.0 3.5 27 4-30 156-182 (359)
442 1q3t_A Cytidylate kinase; nucl 93.5 0.044 1.5E-06 50.7 3.5 26 4-29 15-40 (236)
443 3vr4_D V-type sodium ATPase su 93.5 0.077 2.6E-06 53.2 5.4 91 7-97 153-259 (465)
444 2f9l_A RAB11B, member RAS onco 93.5 0.049 1.7E-06 48.7 3.7 27 3-29 3-29 (199)
445 3hws_A ATP-dependent CLP prote 93.4 0.04 1.4E-06 54.7 3.4 26 5-30 51-76 (363)
446 1b0u_A Histidine permease; ABC 93.4 0.041 1.4E-06 51.7 3.2 26 4-29 31-56 (262)
447 3ug7_A Arsenical pump-driving 93.4 0.1 3.4E-06 51.4 6.1 42 4-48 25-66 (349)
448 4akg_A Glutathione S-transfera 93.4 0.16 5.4E-06 62.7 8.9 76 6-96 1268-1346(2695)
449 3p32_A Probable GTPase RV1496/ 93.3 0.09 3.1E-06 51.9 5.7 28 3-30 77-104 (355)
450 1ihu_A Arsenical pump-driving 93.3 0.079 2.7E-06 56.4 5.6 46 2-50 5-50 (589)
451 2olj_A Amino acid ABC transpor 93.3 0.045 1.5E-06 51.3 3.2 26 4-29 49-74 (263)
452 3gqb_B V-type ATP synthase bet 93.2 0.041 1.4E-06 55.2 3.0 92 6-97 148-262 (464)
453 2yhs_A FTSY, cell division pro 93.2 0.06 2.1E-06 54.9 4.3 27 4-30 292-318 (503)
454 2orw_A Thymidine kinase; TMTK, 93.2 0.05 1.7E-06 48.0 3.3 110 5-124 3-113 (184)
455 1mv5_A LMRA, multidrug resista 93.2 0.05 1.7E-06 50.5 3.5 26 4-29 27-52 (243)
456 3hjn_A DTMP kinase, thymidylat 93.2 0.11 3.9E-06 46.2 5.7 26 7-32 2-27 (197)
457 1svm_A Large T antigen; AAA+ f 93.2 0.049 1.7E-06 53.9 3.6 26 4-29 168-193 (377)
458 3b85_A Phosphate starvation-in 93.2 0.034 1.2E-06 50.1 2.2 23 6-28 23-45 (208)
459 2zu0_C Probable ATP-dependent 93.2 0.051 1.8E-06 51.2 3.5 24 5-28 46-69 (267)
460 3mfy_A V-type ATP synthase alp 93.2 0.14 4.7E-06 52.5 6.8 48 5-57 227-275 (588)
461 2woo_A ATPase GET3; tail-ancho 93.2 0.11 3.8E-06 50.6 6.0 42 4-48 18-59 (329)
462 2dyk_A GTP-binding protein; GT 93.2 0.058 2E-06 46.0 3.6 24 6-29 2-25 (161)
463 1w36_D RECD, exodeoxyribonucle 93.2 0.049 1.7E-06 58.1 3.7 43 5-47 164-206 (608)
464 2v9p_A Replication protein E1; 93.1 0.052 1.8E-06 52.0 3.5 26 4-29 125-150 (305)
465 3gfo_A Cobalt import ATP-bindi 93.1 0.044 1.5E-06 51.7 3.0 25 5-29 34-58 (275)
466 2eyu_A Twitching motility prot 93.1 0.059 2E-06 50.5 3.8 27 4-30 24-50 (261)
467 1vpl_A ABC transporter, ATP-bi 93.1 0.049 1.7E-06 50.9 3.2 26 4-29 40-65 (256)
468 1oix_A RAS-related protein RAB 93.0 0.054 1.8E-06 48.1 3.3 24 6-29 30-53 (191)
469 2vp4_A Deoxynucleoside kinase; 93.0 0.046 1.6E-06 50.3 2.9 25 4-28 19-43 (230)
470 3cwq_A Para family chromosome 93.0 0.12 4.1E-06 46.6 5.6 42 7-52 2-44 (209)
471 1ji0_A ABC transporter; ATP bi 93.0 0.044 1.5E-06 50.7 2.7 25 5-29 32-56 (240)
472 2d2e_A SUFC protein; ABC-ATPas 93.0 0.049 1.7E-06 50.8 3.1 24 5-28 29-52 (250)
473 1sgw_A Putative ABC transporte 93.0 0.037 1.3E-06 50.1 2.1 25 5-29 35-59 (214)
474 2ghi_A Transport protein; mult 93.0 0.052 1.8E-06 50.9 3.2 25 5-29 46-70 (260)
475 4g1u_C Hemin import ATP-bindin 93.0 0.044 1.5E-06 51.5 2.7 26 5-30 37-62 (266)
476 2pze_A Cystic fibrosis transme 92.9 0.046 1.6E-06 50.2 2.7 26 5-30 34-59 (229)
477 2ixe_A Antigen peptide transpo 92.9 0.054 1.9E-06 51.1 3.2 26 5-30 45-70 (271)
478 3fdi_A Uncharacterized protein 92.9 0.057 2E-06 48.4 3.3 26 5-30 6-31 (201)
479 1g6h_A High-affinity branched- 92.9 0.046 1.6E-06 51.2 2.7 26 5-30 33-58 (257)
480 3hdt_A Putative kinase; struct 92.9 0.067 2.3E-06 48.8 3.7 27 4-30 13-39 (223)
481 2ff7_A Alpha-hemolysin translo 92.9 0.047 1.6E-06 50.7 2.7 26 5-30 35-60 (247)
482 3cmw_A Protein RECA, recombina 92.9 0.15 5.2E-06 60.0 7.4 88 5-100 1431-1523(1706)
483 3tqf_A HPR(Ser) kinase; transf 92.8 0.077 2.6E-06 45.5 3.7 25 4-28 15-39 (181)
484 1c9k_A COBU, adenosylcobinamid 92.8 0.094 3.2E-06 45.7 4.4 35 7-48 1-35 (180)
485 2yz2_A Putative ABC transporte 92.8 0.057 1.9E-06 50.9 3.2 25 5-29 33-57 (266)
486 2wji_A Ferrous iron transport 92.8 0.067 2.3E-06 46.1 3.5 23 6-28 4-26 (165)
487 3oaa_A ATP synthase subunit al 92.8 0.37 1.3E-05 48.9 9.2 89 6-98 163-266 (513)
488 3gmt_A Adenylate kinase; ssgci 92.8 0.056 1.9E-06 49.2 3.0 24 7-30 10-33 (230)
489 2woj_A ATPase GET3; tail-ancho 92.8 0.16 5.4E-06 50.0 6.5 46 5-53 18-65 (354)
490 2zej_A Dardarin, leucine-rich 92.8 0.049 1.7E-06 48.0 2.6 22 7-28 4-25 (184)
491 1fx0_A ATP synthase alpha chai 92.6 0.3 1E-05 49.7 8.3 87 6-97 164-266 (507)
492 2qi9_C Vitamin B12 import ATP- 92.6 0.053 1.8E-06 50.4 2.7 26 5-30 26-51 (249)
493 2axn_A 6-phosphofructo-2-kinas 92.6 0.068 2.3E-06 55.6 3.8 28 3-30 33-60 (520)
494 2v3c_C SRP54, signal recogniti 92.6 0.04 1.4E-06 55.8 2.0 40 4-46 98-137 (432)
495 2nq2_C Hypothetical ABC transp 92.6 0.054 1.9E-06 50.5 2.7 26 5-30 31-56 (253)
496 3v9p_A DTMP kinase, thymidylat 92.6 0.094 3.2E-06 47.9 4.2 26 5-30 25-50 (227)
497 2c61_A A-type ATP synthase non 92.5 0.12 4.2E-06 52.1 5.4 92 6-97 153-260 (469)
498 2ihy_A ABC transporter, ATP-bi 92.5 0.061 2.1E-06 51.0 3.0 26 5-30 47-72 (279)
499 3nh6_A ATP-binding cassette SU 92.4 0.087 3E-06 50.5 3.9 27 4-30 79-105 (306)
500 2h92_A Cytidylate kinase; ross 92.4 0.063 2.2E-06 48.8 2.8 24 6-29 4-27 (219)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4e-40 Score=351.71 Aligned_cols=294 Identities=17% Similarity=0.208 Sum_probs=221.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHh--hcccCCCCCCeEEEEEeCCCC--CHHHHHHHHHHHHccCCC--CCccccc---
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINN--KLQEKPNKFNDVIWVTVSQPL--DLFKLQTEIATALKQSLP--ENEDKVR--- 73 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~--~~~~~~~--- 73 (607)
++.++|+|+||||+||||||+++|+ +.+.+ .+|++++||++++.. +...++..|+.+++.... ...+...
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~ 228 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALSKSDQLIG-INYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTS 228 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBT-TTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHh-ccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccH
Confidence 3579999999999999999999997 33333 789999999998875 789999999999987532 1111111
Q ss_pred --chHHHHHHHhcCC-cEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhhcccc-e-eecccCCHHHHHHH
Q 007339 74 --RPGRLLGMLKAKE-KFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRSMKCK-Q-VAVELLSKQEAFNL 148 (607)
Q Consensus 74 --~~~~l~~~~~~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~~~-~-~~l~~L~~~ea~~L 148 (607)
....+.+.+ .++ |+||||||||+..++ .+. ..+||+||||||++.++..+... . |+|++|+.+||++|
T Consensus 229 ~~l~~~l~~~L-~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L 301 (549)
T 2a5y_B 229 VVLKRMICNAL-IDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDF 301 (549)
T ss_dssp HHHHHHHHHHH-TTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHH
Confidence 234444444 664 999999999998754 221 12689999999999998877532 3 99999999999999
Q ss_pred hHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhccccCCCCchhhhhhHHhhhc
Q 007339 149 FIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSLNDVDTKVFGRLEFSYH 228 (607)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~s~~ 228 (607)
|.++++.... .+...+.+++|+++|+|+||||+++|+.++.. . ..|. ..+....... ....+..++.+||+
T Consensus 302 f~~~a~~~~~--~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~---~~l~~~l~~~--~~~~i~~~l~~Sy~ 372 (549)
T 2a5y_B 302 LEAYGMPMPV--GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKM---AQLNNKLESR--GLVGVECITPYSYK 372 (549)
T ss_dssp HHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHH---HHHHHHHHHH--CSSTTCCCSSSSSS
T ss_pred HHHHhcCCCC--chhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHH---HHhHHHhhcc--cHHHHHHHHhcccc
Confidence 9999876532 23377889999999999999999999999864 3 3333 3333222211 13468889999999
Q ss_pred CCChhhHHHHHH-----------HhhcCCCCCccChHHHHHHHHHh--CCccccCCchhhHHHHHHHHHHHHHccccccc
Q 007339 229 RLKDEKLQQCFL-----------YCAQYPEDFAIPKDKLIDYWIAE--GFIDEVKDVPAKYDRGHTILNRLVNWCLLESA 295 (607)
Q Consensus 229 ~L~~~~~~~~~l-----------~la~f~~~~~i~~~~l~~~w~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 295 (607)
.|+ ++.+.||+ +||+||+++.++ +..|+++ |++.........++.++ ++++|+++||++..
T Consensus 373 ~L~-~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~ 446 (549)
T 2a5y_B 373 SLA-MALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSG 446 (549)
T ss_dssp SHH-HHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEE
T ss_pred ccc-HHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEe
Confidence 998 88999999 999999999888 7899999 88876442444555666 99999999999986
Q ss_pred CC--CCeEEecHHHHHHHHHHhcCCC
Q 007339 296 ED--DSCVKMHDLIRDMALRITSKSP 319 (607)
Q Consensus 296 ~~--~~~~~~H~lv~~~~~~~~~~~~ 319 (607)
.. ...|+||++||+||++++.+++
T Consensus 447 ~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 447 KRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp ECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred cCCCceEEEeChHHHHHHHHHHHHHH
Confidence 43 3689999999999998887653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=7.9e-35 Score=314.08 Aligned_cols=266 Identities=17% Similarity=0.224 Sum_probs=205.6
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCe-EEEEEeCCCCCHHHHHHHHHHHHccCC---CCCc--------c
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFND-VIWVTVSQPLDLFKLQTEIATALKQSL---PENE--------D 70 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~--------~ 70 (607)
++.++|+|+||||+||||||++++++.+.+ ..|+. ++|+++++.++...++..+++.++... .... +
T Consensus 148 d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~-~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~ 226 (1221)
T 1vt4_I 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226 (1221)
T ss_dssp CSSCEEEECCSTTSSHHHHHHHHHHHCHHH-HHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHH
T ss_pred CCCeEEEEEcCCCccHHHHHHHHHHhhHHH-HhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCC
Confidence 357899999999999999999999875444 55775 999999998888888888887654321 1110 0
Q ss_pred cccchHHHHHHH--hcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhhcccc-eeecc------cCC
Q 007339 71 KVRRPGRLLGML--KAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRSMKCK-QVAVE------LLS 141 (607)
Q Consensus 71 ~~~~~~~l~~~~--~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~~~-~~~l~------~L~ 141 (607)
.......+.+.+ ..++|+||||||||+.+.|+.+ ..||+||||||++.++..+... .++++ .|+
T Consensus 227 leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS 299 (1221)
T 1vt4_I 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299 (1221)
T ss_dssp HHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCC
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcC
Confidence 111123333333 2579999999999998777754 2689999999999988644333 26666 899
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCc-cHHHHHHHHHHHHhccccCCCCchhhh
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEE-EIYEWQNALNELRGRLRSLNDVDTKVF 220 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~ 220 (607)
.+||++||.++++.. ..+...+ .|+|+||||+++|+.++.+. ....|+.. ....+.
T Consensus 300 ~eEA~eLF~~~~g~~-------~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------------~~~~I~ 356 (1221)
T 1vt4_I 300 PDEVKSLLLKYLDCR-------PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNWKHV-------------NCDKLT 356 (1221)
T ss_dssp HHHHHHHHHHHHCCC-------TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------------SCHHHH
T ss_pred HHHHHHHHHHHcCCC-------HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------------ChhHHH
Confidence 999999999987553 1122333 39999999999999998754 46677642 136899
Q ss_pred hhHHhhhcCCChhhH-HHHHHHhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHHHHHHcccccccCCCC
Q 007339 221 GRLEFSYHRLKDEKL-QQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLESAEDDS 299 (607)
Q Consensus 221 ~~~~~s~~~L~~~~~-~~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~ 299 (607)
.++..||+.|+ ++. |+||++||+||.++.|+...+...|++++ +++++..+++|+++||++..+...
T Consensus 357 aaLelSYd~Lp-~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~~~~ 424 (1221)
T 1vt4_I 357 TIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQPKES 424 (1221)
T ss_dssp HHHHHHHHHSC-TTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCSSSS
T ss_pred HHHHHHHHhCC-HHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeCCCC
Confidence 99999999999 777 99999999999999999999999997764 135778999999999999865567
Q ss_pred eEEecHHHHHHH
Q 007339 300 CVKMHDLIRDMA 311 (607)
Q Consensus 300 ~~~~H~lv~~~~ 311 (607)
+|+||+++++++
T Consensus 425 rYrMHDLllELr 436 (1221)
T 1vt4_I 425 TISIPSIYLELK 436 (1221)
T ss_dssp EEBCCCHHHHHH
T ss_pred EEEehHHHHHHh
Confidence 899999999854
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4e-34 Score=337.97 Aligned_cols=291 Identities=21% Similarity=0.311 Sum_probs=225.8
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhccc-CCCCCCeEEEEEeCCCCC--HHHHHHHHHHHHccCCCCCcccccc---h
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQE-KPNKFNDVIWVTVSQPLD--LFKLQTEIATALKQSLPENEDKVRR---P 75 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~-~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~---~ 75 (607)
+++.++|+|+||||+||||||++++++.+. ...+++.++|+++++... ....+..++..+............. .
T Consensus 144 ~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 223 (1249)
T 3sfz_A 144 NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEA 223 (1249)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHH
T ss_pred cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHH
Confidence 367899999999999999999999998644 234667799999988543 3445667777776644322222222 2
Q ss_pred HHHHHHHhcCC--cEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhhc-ccce-eeccc-CCHHHHHHHhH
Q 007339 76 GRLLGMLKAKE--KFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRSM-KCKQ-VAVEL-LSKQEAFNLFI 150 (607)
Q Consensus 76 ~~l~~~~~~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~-~~~~-~~l~~-L~~~ea~~L~~ 150 (607)
...++..+.++ |+||||||||+..++..+ +++++||||||++.++..+ .... ++++. |+++||++||.
T Consensus 224 ~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~ 296 (1249)
T 3sfz_A 224 KDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS 296 (1249)
T ss_dssp HHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHH
Confidence 22233333444 999999999998776654 5689999999999888543 3333 88886 99999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhccccC-----CCCchhhhhhHHh
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRSL-----NDVDTKVFGRLEF 225 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~~ 225 (607)
..++.... . .++.+++|+++|+|+||||+++|++++... ..|.++++.+....... ......+..++.+
T Consensus 297 ~~~~~~~~-~---~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 370 (1249)
T 3sfz_A 297 LFVNMKKE-D---LPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSI 370 (1249)
T ss_dssp HHHTSCST-T---CCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHH
T ss_pred HhhCCChh-h---CcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHH
Confidence 98865422 2 456799999999999999999999998644 46999999887655321 1122468999999
Q ss_pred hhcCCChhhHHHHHHHhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHHHHHHcccccccCCC--CeEEe
Q 007339 226 SYHRLKDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLESAEDD--SCVKM 303 (607)
Q Consensus 226 s~~~L~~~~~~~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~--~~~~~ 303 (607)
||+.|+ +++|+||++||+||+++.|+...++..|.++ ++.++.++++|+++||++...++ .+|+|
T Consensus 371 s~~~L~-~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~ 437 (1249)
T 3sfz_A 371 SVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYL 437 (1249)
T ss_dssp HHHTSC-TTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEEC
T ss_pred HHHhCC-HHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEe
Confidence 999999 8899999999999999999999999999443 36678899999999999987544 36999
Q ss_pred cHHHHHHHHHHhcCC
Q 007339 304 HDLIRDMALRITSKS 318 (607)
Q Consensus 304 H~lv~~~~~~~~~~~ 318 (607)
|+++|+|+++.+.++
T Consensus 438 h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 438 HDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHhhhhHH
Confidence 999999999997755
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=1.7e-31 Score=289.59 Aligned_cols=287 Identities=21% Similarity=0.300 Sum_probs=213.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCC-CeEEEEEeCCCCCHHHHHHH---HHHHHccCCCC----Ccccccc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKF-NDVIWVTVSQPLDLFKLQTE---IATALKQSLPE----NEDKVRR 74 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~---i~~~l~~~~~~----~~~~~~~ 74 (607)
++.++|+|+||||+||||||.+++++.+.....| +.++|++++.. +...+... ++..++..... ..+....
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~ 223 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEA 223 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHH
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHH
Confidence 5689999999999999999999998763311456 57999999775 33333333 34455421111 1111223
Q ss_pred hHHHHHHHhc-CCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhhhhcccceeec---ccCCHHHHHHHhH
Q 007339 75 PGRLLGMLKA-KEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVCRSMKCKQVAV---ELLSKQEAFNLFI 150 (607)
Q Consensus 75 ~~~l~~~~~~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~~~~~~~~~~l---~~L~~~ea~~L~~ 150 (607)
...+...+.. ++++||||||+|+...++.+ +.+++||||||+..++..+....+++ ++|+.+|+++||.
T Consensus 224 ~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~ 296 (591)
T 1z6t_A 224 KDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILS 296 (591)
T ss_dssp HHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHH
T ss_pred HHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHH
Confidence 3334444433 37999999999987655432 56889999999998877654444444 5899999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHHHHHHHHHHhcccc-----CCCCchhhhhhHHh
Q 007339 151 DGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEWQNALNELRGRLRS-----LNDVDTKVFGRLEF 225 (607)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~~ 225 (607)
+.++.... ...+.+.+|+++|+|+|+||+++|++++... ..|..+++.+...... ......++..++..
T Consensus 297 ~~~~~~~~----~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 370 (591)
T 1z6t_A 297 LFVNMKKA----DLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSI 370 (591)
T ss_dssp HHHTSCGG----GSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHH
T ss_pred HHhCCCcc----cccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHH
Confidence 99876321 1346789999999999999999999998643 4688888888765431 12233578999999
Q ss_pred hhcCCChhhHHHHHHHhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHHHHHHcccccccCCC--CeEEe
Q 007339 226 SYHRLKDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCLLESAEDD--SCVKM 303 (607)
Q Consensus 226 s~~~L~~~~~~~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~--~~~~~ 303 (607)
||+.|+ ++.|.||+++|+||.++.++...+...|... .+.+...+++|+++||+....++ .+|+|
T Consensus 371 s~~~L~-~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~ 437 (591)
T 1z6t_A 371 SVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYL 437 (591)
T ss_dssp HHHTSC-TTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEEC
T ss_pred HHHhCC-HHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEEE
Confidence 999999 7899999999999999999999998888432 24567889999999999865433 47999
Q ss_pred cHHHHHHHHHHhc
Q 007339 304 HDLIRDMALRITS 316 (607)
Q Consensus 304 H~lv~~~~~~~~~ 316 (607)
|+++|+|+++...
T Consensus 438 H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 438 HDLQVDFLTEKNC 450 (591)
T ss_dssp CHHHHHHHHHHTG
T ss_pred cHHHHHHHHhhhh
Confidence 9999999998843
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3e-21 Score=192.48 Aligned_cols=221 Identities=14% Similarity=0.118 Sum_probs=169.6
Q ss_pred CCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeec
Q 007339 353 HMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYL 431 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l 431 (607)
...+++.|++++|.++.+|..+..+++|++|++++|.+. .+| .+.++++|++|++++|.++.+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 467899999999999999998999999999999999887 666 799999999999999999999999999999999999
Q ss_pred cCCcCC-cCCCcc--------ccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcce
Q 007339 432 SSLQLK-KFPTGI--------LPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSK 502 (607)
Q Consensus 432 ~~~~l~-~~~~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 502 (607)
++|++. .+|..+ ++++++|++|++++|... ..+..+..++ +|++|+++.|.+..++..+. ....|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~-~L~~L~L~~N~l~~l~~~l~--~l~~L~ 232 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQ-NLKSLKIRNSPLSALGPAIH--HLPKLE 232 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCT-TCCEEEEESSCCCCCCGGGG--GCTTCC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCC-CCCEEEccCCCCCcCchhhc--cCCCCC
Confidence 998754 454433 234999999999988755 3335688899 99999999998887665433 235577
Q ss_pred eEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCcccccccccccccc
Q 007339 503 NYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKF 581 (607)
Q Consensus 503 ~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~ 581 (607)
.+++..+. .....+..+.++++|+.|+|++|++.+..+. +..+++|+.|++++|+.++.+|. .+ ..
T Consensus 233 ~L~Ls~n~---~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~--~l--------~~ 299 (328)
T 4fcg_A 233 ELDLRGCT---ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS--LI--------AQ 299 (328)
T ss_dssp EEECTTCT---TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG--GG--------GG
T ss_pred EEECcCCc---chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH--HH--------hh
Confidence 76665322 1123445677778888888888876655443 66778888888888887777663 12 66
Q ss_pred ccccceEEEec
Q 007339 582 SHDLKVLRFHY 592 (607)
Q Consensus 582 ~~~L~~L~l~~ 592 (607)
+++|+.+++..
T Consensus 300 L~~L~~l~l~~ 310 (328)
T 4fcg_A 300 LPANCIILVPP 310 (328)
T ss_dssp SCTTCEEECCG
T ss_pred ccCceEEeCCH
Confidence 78888887764
No 6
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=8.8e-21 Score=198.36 Aligned_cols=223 Identities=17% Similarity=0.181 Sum_probs=176.7
Q ss_pred CCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeeec
Q 007339 355 NGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLYL 431 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l 431 (607)
++++.|++++|.++.+ +..|..+++|++|++++|.+....+ .+.++++|++|+|++|.++.+|+. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 6889999999999866 4578999999999999998877776 788999999999999999988764 788999999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSES 511 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 511 (607)
++|.++.+++..+.++++|+.|++++|+.........+..++ +|+.|+++.|.+..++.. .....|+.|++..+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~---~~l~~L~~L~Ls~N-- 228 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDMPNL---TPLVGLEELEMSGN-- 228 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSCCCC---TTCTTCCEEECTTS--
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCcccccccc---cccccccEEECcCC--
Confidence 999999998888899999999999986655544445678888 999999999988876542 22455777776522
Q ss_pred hhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccccccccceEEE
Q 007339 512 WMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRF 590 (607)
Q Consensus 512 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l 590 (607)
......+..|.++++|+.|+|++|.+....+. +..+++|+.|+|++|. ++.++. ..+ ..+++|++|++
T Consensus 229 -~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~--------~~l~~L~~L~L 297 (452)
T 3zyi_A 229 -HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPH-DLF--------TPLRYLVELHL 297 (452)
T ss_dssp -CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT-TSS--------TTCTTCCEEEC
T ss_pred -cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccCh-HHh--------ccccCCCEEEc
Confidence 22223456788889999999999988765443 6778899999999984 555542 122 66899999999
Q ss_pred eccc
Q 007339 591 HYCH 594 (607)
Q Consensus 591 ~~c~ 594 (607)
++++
T Consensus 298 ~~Np 301 (452)
T 3zyi_A 298 HHNP 301 (452)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8876
No 7
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=196.88 Aligned_cols=230 Identities=16% Similarity=0.162 Sum_probs=177.6
Q ss_pred ccchhhhcCCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hcc
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CME 421 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~ 421 (607)
.+|..+ .++++.|++++|.++.++ ..|..+++|++|++++|.+....+ .+.++++|++|+|++|+++.+|+ .+.
T Consensus 57 ~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 133 (440)
T 3zyj_A 57 EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133 (440)
T ss_dssp SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSC
T ss_pred cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhh
Confidence 355543 267889999999988665 578889999999999988777666 78899999999999999988876 588
Q ss_pred CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcc
Q 007339 422 MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGS 501 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 501 (607)
.+++|++|++++|.++.+++..+.++++|+.|++++|+.........+..++ +|++|+++.|.+..++.. ....+|
T Consensus 134 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~---~~l~~L 209 (440)
T 3zyj_A 134 YLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMCNLREIPNL---TPLIKL 209 (440)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCEEECTTSCCSSCCCC---TTCSSC
T ss_pred ccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCeecCCCCcCcccccc---CCCccc
Confidence 8999999999999999988888889999999999986655444445678888 999999999988877642 224557
Q ss_pred eeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccc
Q 007339 502 KNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGK 580 (607)
Q Consensus 502 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~ 580 (607)
+.|++..+ ......+..|.++++|+.|+|++|.+....+. +..+++|+.|+|++|. ++.++. ..+ .
T Consensus 210 ~~L~Ls~N---~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~--------~ 276 (440)
T 3zyj_A 210 DELDLSGN---HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPH-DLF--------T 276 (440)
T ss_dssp CEEECTTS---CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCT-TTT--------S
T ss_pred CEEECCCC---ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccCh-hHh--------c
Confidence 77776532 22223456778889999999999988765543 6778889999999984 445441 122 6
Q ss_pred cccccceEEEeccc
Q 007339 581 FSHDLKVLRFHYCH 594 (607)
Q Consensus 581 ~~~~L~~L~l~~c~ 594 (607)
.+++|+.|++++++
T Consensus 277 ~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 277 PLHHLERIHLHHNP 290 (440)
T ss_dssp SCTTCCEEECCSSC
T ss_pred cccCCCEEEcCCCC
Confidence 68899999998876
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=2e-20 Score=191.86 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=115.5
Q ss_pred hhcccccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH
Q 007339 340 ENLERRIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL 417 (607)
Q Consensus 340 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~ 417 (607)
++..+.+|..+|..+++|++|++++|.++.++. .+..+++|++|++++|.+....| .+.++++|++|++++|.++.+|
T Consensus 54 ~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 133 (390)
T 3o6n_A 54 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133 (390)
T ss_dssp SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC
Confidence 444556888889999999999999999997764 78999999999999999887777 6899999999999999999988
Q ss_pred Hh-ccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecC
Q 007339 418 EC-MEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSK 485 (607)
Q Consensus 418 ~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~ 485 (607)
.. ++++++|++|++++|.++.+++..+.++++|+.|++++|..... .+..++ +|+.|+++.|.
T Consensus 134 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~-~L~~L~l~~n~ 197 (390)
T 3o6n_A 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIP-SLFHANVSYNL 197 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCT-TCSEEECCSSC
T ss_pred HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----cccccc-ccceeeccccc
Confidence 76 58899999999999999999888889999999999998865432 133344 44444444443
No 9
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=187.08 Aligned_cols=240 Identities=18% Similarity=0.170 Sum_probs=181.8
Q ss_pred cccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-c
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-M 420 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~ 420 (607)
..+|..++ ++|++|++++|.++.++. .+..+++|++|++++|.+....+ .+.++++|++|++++|.++.+|.. +
T Consensus 44 ~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 120 (353)
T 2z80_A 44 NSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWF 120 (353)
T ss_dssp SSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHH
T ss_pred cccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHh
Confidence 34666533 589999999999998876 78999999999999998887766 799999999999999999988875 8
Q ss_pred cCCCCCCeeeccCCcCCcCCC-ccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccc-ccccccccC
Q 007339 421 EMLENLSHLYLSSLQLKKFPT-GILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDF-NRYVKSTDG 498 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~-~~~~~~~~~ 498 (607)
+++++|++|++++|.++.++. ..+.++++|++|++++|+.........+..++ +|++|+++.|.+... +..+. ..
T Consensus 121 ~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~--~l 197 (353)
T 2z80_A 121 KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT-FLEELEIDASDLQSYEPKSLK--SI 197 (353)
T ss_dssp TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTTTT--TC
T ss_pred CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC-CCCEEECCCCCcCccCHHHHh--cc
Confidence 899999999999999999887 66789999999999988544444446678899 999999999988765 33333 23
Q ss_pred CcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc--------------------------------cc
Q 007339 499 RGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP--------------------------------IV 546 (607)
Q Consensus 499 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--------------------------------~~ 546 (607)
.+|+.+.+..+. . .......+..+++|+.|+|++|.+.+.... +.
T Consensus 198 ~~L~~L~l~~n~-l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 198 QNVSHLILHMKQ-H--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp SEEEEEEEECSC-S--TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred ccCCeecCCCCc-c--ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 558887776432 1 111222334578899999999988764311 23
Q ss_pred CCcccceeeeeeecCcccccCccccccccccccccccccceEEEecccchhhhhhc
Q 007339 547 LPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLKNLFSL 602 (607)
Q Consensus 547 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~ 602 (607)
.+++|+.|++++|. ++.+|. ..+ ..+++|++|++++|+-..+.|.+
T Consensus 275 ~l~~L~~L~Ls~N~-l~~i~~-~~~--------~~l~~L~~L~L~~N~~~~~~~~l 320 (353)
T 2z80_A 275 QISGLLELEFSRNQ-LKSVPD-GIF--------DRLTSLQKIWLHTNPWDCSCPRI 320 (353)
T ss_dssp TCTTCCEEECCSSC-CCCCCT-TTT--------TTCTTCCEEECCSSCBCCCHHHH
T ss_pred cccCCCEEECCCCC-CCccCH-HHH--------hcCCCCCEEEeeCCCccCcCCCc
Confidence 56789999999884 445552 112 56899999999999876666643
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=1.1e-20 Score=187.39 Aligned_cols=236 Identities=12% Similarity=0.098 Sum_probs=156.1
Q ss_pred ccchhhhcCCCCceEEEccC-CCCc-cCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hhHHhc
Q 007339 345 RIPECFFVHMNGLKVLNLSH-TDIE-VLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EVLECM 420 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~-~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~ 420 (607)
.+|+. |.++++|++|++++ |.+. .+|..+..+++|++|++++|.+....| .+.++++|++|++++|.++ .+|..+
T Consensus 67 ~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 145 (313)
T 1ogq_A 67 PIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145 (313)
T ss_dssp ECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence 45654 67788888888884 7666 677778888888888888887776666 6788888888888888777 667778
Q ss_pred cCCCCCCeeeccCCcCCcCCCccccCCC-CCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccc-cccccccC
Q 007339 421 EMLENLSHLYLSSLQLKKFPTGILPRLR-NLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFN-RYVKSTDG 498 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~-~~~~~~~~ 498 (607)
+.+++|++|++++|.+++..+..+.+++ +|+.|++++|..... .+..+..+ +|+.|+++.|.+.... ..+. ..
T Consensus 146 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~--~l 220 (313)
T 1ogq_A 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-IPPTFANL--NLAFVDLSRNMLEGDASVLFG--SD 220 (313)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-CCGGGGGC--CCSEEECCSSEEEECCGGGCC--TT
T ss_pred hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-CChHHhCC--cccEEECcCCcccCcCCHHHh--cC
Confidence 8888888888888887744344456776 788888887754322 22344444 3788888877776432 2222 23
Q ss_pred CcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCC-cccCCcccceeeeeeecCcccccCcccccccccc
Q 007339 499 RGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREE-PIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVN 577 (607)
Q Consensus 499 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~ 577 (607)
..|+.+.+..+. ... ....+..+++|++|+|++|.+.+..+ .+..+++|+.|++++|...+.+|. .
T Consensus 221 ~~L~~L~L~~N~-l~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~---~------ 287 (313)
T 1ogq_A 221 KNTQKIHLAKNS-LAF---DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---G------ 287 (313)
T ss_dssp SCCSEEECCSSE-ECC---BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC---S------
T ss_pred CCCCEEECCCCc-eee---ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC---C------
Confidence 446666665322 110 11125566778888888887764333 366677788888888754444442 2
Q ss_pred ccccccccceEEEecccchhhhhh
Q 007339 578 IGKFSHDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 578 ~~~~~~~L~~L~l~~c~~l~~lp~ 601 (607)
..+++|+.|++++++.+-..|-
T Consensus 288 --~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 288 --GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp --TTGGGSCGGGTCSSSEEESTTS
T ss_pred --ccccccChHHhcCCCCccCCCC
Confidence 4567788888888877665543
No 11
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.7e-20 Score=203.05 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=108.3
Q ss_pred hhcccccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH
Q 007339 340 ENLERRIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL 417 (607)
Q Consensus 340 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~ 417 (607)
.+..+.+|+.+|..+++|++|++++|.++.++. .|..+++|++|++++|.+....| .+.++++|++|++++|.++.+|
T Consensus 60 ~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 60 NSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139 (597)
T ss_dssp SCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence 444566888889999999999999999997764 78999999999999999887777 6899999999999999999888
Q ss_pred Hh-ccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchh
Q 007339 418 EC-MEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEAL 462 (607)
Q Consensus 418 ~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~ 462 (607)
+. ++++++|++|++++|.++.+++..++++++|+.|++++|....
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 76 5899999999999999999998888999999999999886543
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=9.4e-21 Score=187.76 Aligned_cols=231 Identities=15% Similarity=0.095 Sum_probs=184.2
Q ss_pred CCceEEEccCCCCc---cCCccccCCccCcEeeccc-ccCCCCCC-cccCCCCCCEEeccCCchh-hhHHhccCCCCCCe
Q 007339 355 NGLKVLNLSHTDIE---VLPSSISDLTNLRSLLLRW-CGRLKRVP-SLAKLLALQYLDLEGTWIE-EVLECMEMLENLSH 428 (607)
Q Consensus 355 ~~L~~L~l~~~~~~---~l~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~L~~ 428 (607)
.+++.|++++|.+. .+|..+..+++|++|++++ |.+...+| .+.++++|++|++++|.++ .+|..++++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 68999999999998 5889999999999999995 88887788 8999999999999999998 78888999999999
Q ss_pred eeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc-cccccccccCCcceeEEEE
Q 007339 429 LYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD-FNRYVKSTDGRGSKNYCLV 507 (607)
Q Consensus 429 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~l~l~ 507 (607)
|++++|.+++..+..+.++++|++|++++|..... .+..+..++.+|+.|+++.|.+.. .+..+... .|+.+.+.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l---~L~~L~Ls 205 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL---NLAFVDLS 205 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC---CCSEEECC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCChHHhCC---cccEEECc
Confidence 99999999966666679999999999999875422 234566664489999999998874 45544433 27777665
Q ss_pred eecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccce
Q 007339 508 LSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKV 587 (607)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~ 587 (607)
.+. .....+..|.++++|+.|+|++|.+.+..+.+..+++|++|++++|...+.+|. .+ ..+++|++
T Consensus 206 ~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~l--------~~l~~L~~ 272 (313)
T 1ogq_A 206 RNM---LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ--GL--------TQLKFLHS 272 (313)
T ss_dssp SSE---EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG--GG--------GGCTTCCE
T ss_pred CCc---ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh--HH--------hcCcCCCE
Confidence 321 112345667889999999999999986655577789999999999964434442 22 67899999
Q ss_pred EEEecccchhhhhhc
Q 007339 588 LRFHYCHNLKNLFSL 602 (607)
Q Consensus 588 L~l~~c~~l~~lp~~ 602 (607)
|++++|+--+.+|..
T Consensus 273 L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 273 LNVSFNNLCGEIPQG 287 (313)
T ss_dssp EECCSSEEEEECCCS
T ss_pred EECcCCcccccCCCC
Confidence 999999877677765
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.82 E-value=5.2e-20 Score=205.21 Aligned_cols=248 Identities=17% Similarity=0.104 Sum_probs=185.7
Q ss_pred hhcccccchhhhcCCCCceEEEccCCCCc-cCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hh
Q 007339 340 ENLERRIPECFFVHMNGLKVLNLSHTDIE-VLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EV 416 (607)
Q Consensus 340 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l 416 (607)
+.+.+.+|.. |.++++|++|++++|.++ .+|..+..+++|++|++++|.+....| .+..+++|++|++++|.++ .+
T Consensus 404 n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 404 NGFTGKIPPT-LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp SEEEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CccccccCHH-HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC
Confidence 3444556665 778999999999999988 778889999999999999999888888 8999999999999999988 67
Q ss_pred HHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc-ccccccc
Q 007339 417 LECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD-FNRYVKS 495 (607)
Q Consensus 417 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~~~~~ 495 (607)
|..++++++|++|++++|.+++..+..++++++|++|++++|.... ..+..+..++ +|+.|+++.|.+.+ ++..+..
T Consensus 483 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG-NIPAELGDCR-SLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE-ECCGGGGGCT-TCCEEECCSSEEESBCCGGGGT
T ss_pred CHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC-cCCHHHcCCC-CCCEEECCCCccCCcCChHHhc
Confidence 8889999999999999999997777777999999999999887543 3346788899 99999999988763 3332211
Q ss_pred c--------------------------------------------------------------------cCCcceeEEEE
Q 007339 496 T--------------------------------------------------------------------DGRGSKNYCLV 507 (607)
Q Consensus 496 ~--------------------------------------------------------------------~~~~L~~l~l~ 507 (607)
. ....|+.+++.
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 0 01123333333
Q ss_pred eecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccccccccc
Q 007339 508 LSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLK 586 (607)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~ 586 (607)
. +......+..+.++++|+.|+|++|.+.+..+. +..+++|+.|++++|...+.+|. .+ ..++.|+
T Consensus 641 ~---N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~--~l--------~~l~~L~ 707 (768)
T 3rgz_A 641 Y---NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ--AM--------SALTMLT 707 (768)
T ss_dssp S---SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG--GG--------GGCCCCS
T ss_pred C---CcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh--HH--------hCCCCCC
Confidence 1 111123455677778888888888887755544 67777888888888865555442 12 6688899
Q ss_pred eEEEecccchhhhhhcc
Q 007339 587 VLRFHYCHNLKNLFSLR 603 (607)
Q Consensus 587 ~L~l~~c~~l~~lp~~~ 603 (607)
+|++++|+--+.||..+
T Consensus 708 ~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp EEECCSSEEEEECCSSS
T ss_pred EEECcCCcccccCCCch
Confidence 99999988877887654
No 14
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=6.1e-20 Score=183.72 Aligned_cols=195 Identities=15% Similarity=0.150 Sum_probs=115.3
Q ss_pred CCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 355 NGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
+++++|++++|.++.++. .+..+++|++|++++|.+....| .+.++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECC
Confidence 466777777777776654 56677777777777776666555 66777777777777777766665443 567777777
Q ss_pred CCcCCcCCCccccCCCCCCEEEcccCcchhh-hhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecc
Q 007339 433 SLQLKKFPTGILPRLRNLYKLKLSFGNEALR-ETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSES 511 (607)
Q Consensus 433 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 511 (607)
+|.++.+++..+.++++|+.|++++|..... .....+..++ +|+.|+++.|.+..++..+. ..|+.+.+..+.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~- 203 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYIRIADTNITTIPQGLP----PSLTELHLDGNK- 203 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT-TCCEEECCSSCCCSCCSSCC----TTCSEEECTTSC-
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC-CcCEEECCCCccccCCcccc----ccCCEEECCCCc-
Confidence 7777766666666777777777776654321 2224556666 77777777666655443322 335554443211
Q ss_pred hhhhhhcccccccccccceeeeeeeccCCCCC-cccCCcccceeeeeee
Q 007339 512 WMYYMFIRDLITDLEVDKSVRLFACKICEREE-PIVLPEDVQYLEMIRV 559 (607)
Q Consensus 512 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~l~~~ 559 (607)
.....+..+.++++|+.|+|++|.+.+... .+..+++|+.|++++|
T Consensus 204 --l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 204 --ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp --CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred --CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 111122344555566666666665554333 2444555666666655
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=7.1e-20 Score=203.08 Aligned_cols=160 Identities=14% Similarity=0.220 Sum_probs=123.8
Q ss_pred hhcccccchhhhcCCCCceEEEccCCCCcc------------------CCcccc--CCccCcEeecccccCCCCCC-ccc
Q 007339 340 ENLERRIPECFFVHMNGLKVLNLSHTDIEV------------------LPSSIS--DLTNLRSLLLRWCGRLKRVP-SLA 398 (607)
Q Consensus 340 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~~~-~~~ 398 (607)
+.+.+ +|+. |.++++|++|++++|.++. +|..++ .+++|++|++++|.+...+| .+.
T Consensus 435 N~L~~-IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITF-ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred Ccccc-hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 45556 8876 7899999999999999987 898877 99999999999999888888 899
Q ss_pred CCCCCCEEeccCCc-hhh--hHHhccCCC-------CCCeeeccCCcCCcCCC-ccccCCCCCCEEEcccCcchhhhhHH
Q 007339 399 KLLALQYLDLEGTW-IEE--VLECMEMLE-------NLSHLYLSSLQLKKFPT-GILPRLRNLYKLKLSFGNEALRETVE 467 (607)
Q Consensus 399 ~l~~L~~L~l~~~~-l~~--l~~~~~~l~-------~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 467 (607)
++++|++|++++|+ ++. +|..+++++ +|+.|++++|.++.+|. ..++++++|+.|++++|... . .+
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~-lp- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-H-LE- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-B-CC-
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-c-ch-
Confidence 99999999999997 774 787766655 89999999998887776 24588888888888887655 2 22
Q ss_pred HhhcccccccEEEeeecCccccccccccccCCc-ceeEEEE
Q 007339 468 EAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRG-SKNYCLV 507 (607)
Q Consensus 468 ~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~l~l~ 507 (607)
.+..++ +|+.|+++.|.+..++..+.. ... |+.|.+.
T Consensus 590 ~~~~L~-~L~~L~Ls~N~l~~lp~~l~~--l~~~L~~L~Ls 627 (876)
T 4ecn_A 590 AFGTNV-KLTDLKLDYNQIEEIPEDFCA--FTDQVEGLGFS 627 (876)
T ss_dssp CCCTTS-EESEEECCSSCCSCCCTTSCE--ECTTCCEEECC
T ss_pred hhcCCC-cceEEECcCCccccchHHHhh--ccccCCEEECc
Confidence 667777 788888877777665544332 233 5555554
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=1.1e-19 Score=198.03 Aligned_cols=161 Identities=15% Similarity=0.273 Sum_probs=128.5
Q ss_pred hhcccccchhhhcCCCCceEEEccCCCCcc------------------CCcccc--CCccCcEeecccccCCCCCC-ccc
Q 007339 340 ENLERRIPECFFVHMNGLKVLNLSHTDIEV------------------LPSSIS--DLTNLRSLLLRWCGRLKRVP-SLA 398 (607)
Q Consensus 340 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------l~~~~~--~l~~L~~L~l~~~~~~~~~~-~~~ 398 (607)
+++.+ +|+. |.++++|++|++++|.++. +|..++ ++++|++|++++|.+...+| .+.
T Consensus 193 n~l~~-ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 193 NNITF-VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp CEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred CCCcc-CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 45667 8886 7899999999999999997 999988 99999999999999998888 899
Q ss_pred CCCCCCEEeccCCc-hh--hhHHhccCC------CCCCeeeccCCcCCcCCC-ccccCCCCCCEEEcccCcchhhhhHHH
Q 007339 399 KLLALQYLDLEGTW-IE--EVLECMEML------ENLSHLYLSSLQLKKFPT-GILPRLRNLYKLKLSFGNEALRETVEE 468 (607)
Q Consensus 399 ~l~~L~~L~l~~~~-l~--~l~~~~~~l------~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~ 468 (607)
++++|++|++++|+ ++ .+|..++++ ++|++|++++|.++.+|. ..++++++|+.|++++|....... .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--h
Confidence 99999999999998 87 488888776 999999999999997776 246899999999999887552322 5
Q ss_pred hhcccccccEEEeeecCccccccccccccCCc-ceeEEEE
Q 007339 469 AASLSDGLDYFEGCFSKLKDFNRYVKSTDGRG-SKNYCLV 507 (607)
Q Consensus 469 l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~l~l~ 507 (607)
+..++ +|+.|+++.|.+..++..+.. ... |+.+.+.
T Consensus 349 ~~~l~-~L~~L~L~~N~l~~lp~~l~~--l~~~L~~L~Ls 385 (636)
T 4eco_A 349 FGSEI-KLASLNLAYNQITEIPANFCG--FTEQVENLSFA 385 (636)
T ss_dssp CEEEE-EESEEECCSSEEEECCTTSEE--ECTTCCEEECC
T ss_pred hCCCC-CCCEEECCCCccccccHhhhh--hcccCcEEEcc
Confidence 66777 777777777776655544332 233 5554444
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=1.5e-19 Score=189.45 Aligned_cols=109 Identities=23% Similarity=0.341 Sum_probs=57.0
Q ss_pred hcCCCCceEEEccCCCCc-cC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhh-hHHh--ccCCC
Q 007339 351 FVHMNGLKVLNLSHTDIE-VL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEE-VLEC--MEMLE 424 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~-~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~-l~~~--~~~l~ 424 (607)
|.++++|++|++++|.+. .+ +..|..+++|++|++++|.+....| .+.++++|++|++++|.++. +|.. +++++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 555555555555555544 33 2345555555555555555544444 45555555555555555552 2332 55555
Q ss_pred CCCeeeccCCcCCcCCCc-cccCCCCCCEEEcccCc
Q 007339 425 NLSHLYLSSLQLKKFPTG-ILPRLRNLYKLKLSFGN 459 (607)
Q Consensus 425 ~L~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~~~ 459 (607)
+|++|++++|.++.+.+. .+.++++|++|++++|.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 555555555555554332 24555555555555543
No 18
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=5.8e-19 Score=186.15 Aligned_cols=243 Identities=18% Similarity=0.082 Sum_probs=170.7
Q ss_pred ccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhh-HHhcc
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEV-LECME 421 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~ 421 (607)
.+++..|.++++|++|++++|.++.+ |..|..+++|++|++++|.+....+ .+.++++|++|++++|.+..+ |..+.
T Consensus 46 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcc
Confidence 35555688999999999999999866 6789999999999999998776655 688999999999999998866 45788
Q ss_pred CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcc
Q 007339 422 MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGS 501 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 501 (607)
++++|++|++++|.++.+++..+.++++|+.|++++|.... .....+..++ +|+.|+++.|.+....... ...+.+|
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~-~~~l~~L 202 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEALSHLH-GLIVLRLRHLNINAIRDYS-FKRLYRL 202 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHHHTTCT-TCCEEEEESCCCCEECTTC-SCSCTTC
T ss_pred ccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhHhcccC-CCcEEeCCCCcCcEeChhh-cccCccc
Confidence 99999999999999998888888999999999999886543 3346688888 9999999988876654321 1223446
Q ss_pred eeEEEEeecchh---------------------hhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeee
Q 007339 502 KNYCLVLSESWM---------------------YYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRV 559 (607)
Q Consensus 502 ~~l~l~~~~~~~---------------------~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~ 559 (607)
+.+++..+.... ........+.++++|+.|+|++|.+...... +..+++|+.|++++|
T Consensus 203 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSS
T ss_pred ceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCC
Confidence 666665321000 0011112345566666666666666544332 455666777777766
Q ss_pred cCcccccCccccccccccccccccccceEEEecccchhhhhh
Q 007339 560 DDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 560 ~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 601 (607)
. ++.++ ...+ ..+++|++|++++| .++.+|.
T Consensus 283 ~-l~~~~-~~~~--------~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 283 Q-LAVVE-PYAF--------RGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp C-CSEEC-TTTB--------TTCTTCCEEECCSS-CCSCCCG
T ss_pred c-cceEC-HHHh--------cCcccCCEEECCCC-cCceeCH
Confidence 3 22222 1112 56788999999887 4444443
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=3.5e-20 Score=205.51 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=164.4
Q ss_pred ccchhh-hcCCCCceEEEccCCCCc-cCCccccCCccCcEeeccccc-CCC-CCC-cccCCC-------CCCEEeccCCc
Q 007339 345 RIPECF-FVHMNGLKVLNLSHTDIE-VLPSSISDLTNLRSLLLRWCG-RLK-RVP-SLAKLL-------ALQYLDLEGTW 412 (607)
Q Consensus 345 ~~~~~~-~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~-~~~-~~~-~~~~l~-------~L~~L~l~~~~ 412 (607)
.+|+.+ |.++++|+.|++++|.+. .+|..+..+++|++|++++|. +.. .+| .+.++. +|++|++++|.
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 488875 459999999999999865 889899999999999999998 665 566 565554 99999999999
Q ss_pred hhhhHH--hccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhccccc-ccEEEeeecCcccc
Q 007339 413 IEEVLE--CMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDG-LDYFEGCFSKLKDF 489 (607)
Q Consensus 413 l~~l~~--~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~-L~~L~l~~~~~~~~ 489 (607)
++.+|. .++++++|+.|++++|.++.+| .++++++|+.|++++|... ..+..+..++ + |+.|+++.|.+..+
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~-~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIE--EIPEDFCAFT-DQVEGLGFSHNKLKYI 634 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCS--CCCTTSCEEC-TTCCEEECCSSCCCSC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccc--cchHHHhhcc-ccCCEEECcCCCCCcC
Confidence 999998 8999999999999999999877 5699999999999998765 3335688888 8 99999999998877
Q ss_pred ccccccccCCcceeEEEEeecchhh--------------------------hhhcccccccccccceeeeeeeccCCCCC
Q 007339 490 NRYVKSTDGRGSKNYCLVLSESWMY--------------------------YMFIRDLITDLEVDKSVRLFACKICEREE 543 (607)
Q Consensus 490 ~~~~~~~~~~~L~~l~l~~~~~~~~--------------------------~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 543 (607)
+..+.......|+.+.+..+.-... .......+..+++|+.|+|++|.+...+.
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~ 714 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPE 714 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence 7655444333355555542211000 00111112345666666666666654333
Q ss_pred c-ccC-------CcccceeeeeeecCcccccCccccccccccccccccccceEEEeccc
Q 007339 544 P-IVL-------PEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 544 ~-~~~-------~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
. ... +++|+.|+|++|. ++.+|..... ..+++|+.|+|++|+
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~--------~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRA--------TTLPYLSNMDVSYNC 764 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGST--------TTCTTCCEEECCSSC
T ss_pred HHhccccccccccCCccEEECCCCC-CccchHHhhh--------ccCCCcCEEEeCCCC
Confidence 2 111 1266666666663 3343321110 257778888887764
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-19 Score=179.86 Aligned_cols=224 Identities=18% Similarity=0.137 Sum_probs=157.1
Q ss_pred CCceEEEccCCCCccCCcc-ccCCccCcEeecccccCCCCC--C-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 355 NGLKVLNLSHTDIEVLPSS-ISDLTNLRSLLLRWCGRLKRV--P-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~~-~~~l~~L~~L~l~~~~~~~~~--~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
++|++|++++|.++.+|.. |..+++|++|++++|.+.... + .+..+++|++|++++|.+..+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 5788888888888877764 678888888888888765432 3 56678888888888888888887788888888888
Q ss_pred ccCCcCCcCCC-ccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc--cccccccccCCcceeEEEE
Q 007339 431 LSSLQLKKFPT-GILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD--FNRYVKSTDGRGSKNYCLV 507 (607)
Q Consensus 431 l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~l~l~ 507 (607)
+++|.++.+++ ..+.++++|+.|++++|..... ....+..++ +|++|+++.|.+.. .+..+. ...+|+.+++.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--~l~~L~~L~Ls 183 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLS-SLEVLKMAGNSFQENFLPDIFT--ELRNLTFLDLS 183 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCT-TCCEEECTTCEEGGGEECSCCT--TCTTCCEEECT
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCc-CCCEEECCCCccccccchhHHh--hCcCCCEEECC
Confidence 88888887765 5567888888888887764322 224567778 88888888887754 333332 23457776665
Q ss_pred eecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccccc-ccc
Q 007339 508 LSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFS-HDL 585 (607)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~-~~L 585 (607)
.+. .....+..+.++++|+.|+|++|.+.+.... +..+++|+.|++++|...+..+ ..+ ..+ ++|
T Consensus 184 ~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~--------~~~~~~L 250 (306)
T 2z66_A 184 QCQ---LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK--QEL--------QHFPSSL 250 (306)
T ss_dssp TSC---CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS--SSC--------CCCCTTC
T ss_pred CCC---cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH--HHH--------HhhhccC
Confidence 221 1122345667788888999988888766553 6667888899988885332222 112 445 488
Q ss_pred ceEEEecccc
Q 007339 586 KVLRFHYCHN 595 (607)
Q Consensus 586 ~~L~l~~c~~ 595 (607)
++|++++|+-
T Consensus 251 ~~L~L~~N~~ 260 (306)
T 2z66_A 251 AFLNLTQNDF 260 (306)
T ss_dssp CEEECTTCCE
T ss_pred CEEEccCCCe
Confidence 8888888763
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=1.2e-18 Score=175.63 Aligned_cols=217 Identities=17% Similarity=0.187 Sum_probs=115.4
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+..+++|++|++++|.++.++ .+..+++|++|++++|.+... +.+.++++|++|++++|.....++.+..+++|++|+
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~ 161 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCC-GGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEE
T ss_pred hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCc-hhhccCCceeEEECCCCCCcccccchhhCCCCcEEE
Confidence 444555555555555544443 344555555555555443322 224455555555555553222222345555555555
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
+++|.+..+++ +..+++|+.|++++|....... +..++ +|+.++++.|.+..... ......|+.+.+..+.
T Consensus 162 l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~-~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 162 VTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP---LASLT-SLHYFTAYVNQITDITP---VANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG---GGGCT-TCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSC
T ss_pred ecCCCcCCchh--hccCCCCCEEEccCCccccccc---ccCCC-ccceeecccCCCCCCch---hhcCCcCCEEEccCCc
Confidence 55555555443 3555555666655554332221 44555 66666666555544333 1223446666554221
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEE
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRF 590 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l 590 (607)
... . ..+..+++|+.|++++|.+... +.+..+++|+.|++++|. ++.+ +.+ ..+++|++|++
T Consensus 233 -l~~--~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~---~~~--------~~l~~L~~L~L 294 (347)
T 4fmz_A 233 -ITD--L--SPLANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQ-ISDI---SVL--------NNLSQLNSLFL 294 (347)
T ss_dssp -CCC--C--GGGTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSC-CCCC---GGG--------GGCTTCSEEEC
T ss_pred -cCC--C--cchhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCc-cCCC---hhh--------cCCCCCCEEEC
Confidence 111 0 1156677788888888877654 335667778888888873 3333 333 66888999999
Q ss_pred ecccch
Q 007339 591 HYCHNL 596 (607)
Q Consensus 591 ~~c~~l 596 (607)
++|+--
T Consensus 295 ~~n~l~ 300 (347)
T 4fmz_A 295 NNNQLG 300 (347)
T ss_dssp CSSCCC
T ss_pred cCCcCC
Confidence 988643
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=1e-18 Score=176.23 Aligned_cols=223 Identities=16% Similarity=0.152 Sum_probs=174.0
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
|..+++|++|++++|.+..++. +..+++|++|++++|......+.+..+++|++|++++|.+..++. +..+++|+.|+
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS 183 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE
Confidence 7899999999999999998876 889999999999999877777789999999999999998887766 78899999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
+++|.+..+++ +..+++|+.|++++|....... +..++ +|++|+++.|.+...+. ...+..|+.+.+..+.
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~-~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMT-RLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCT-TCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch---hhcCC-cCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc
Confidence 99999988876 6889999999999886554333 67888 99999999998877665 2234568887776332
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEE
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRF 590 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l 590 (607)
... ...+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.. +..+ ...+ ..+++|++|++
T Consensus 255 -l~~----~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l-~~~~-~~~l--------~~l~~L~~L~L 318 (347)
T 4fmz_A 255 -ISD----INAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQL-GNED-MEVI--------GGLTNLTTLFL 318 (347)
T ss_dssp -CCC----CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CGGG-HHHH--------HTCTTCSEEEC
T ss_pred -cCC----ChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcC-CCcC-hhHh--------hccccCCEEEc
Confidence 111 13467788999999999988765 3466778899999999853 2222 1122 56889999999
Q ss_pred ecccchhhhhh
Q 007339 591 HYCHNLKNLFS 601 (607)
Q Consensus 591 ~~c~~l~~lp~ 601 (607)
++|+ +.++|.
T Consensus 319 ~~n~-l~~~~~ 328 (347)
T 4fmz_A 319 SQNH-ITDIRP 328 (347)
T ss_dssp CSSS-CCCCGG
T ss_pred cCCc-cccccC
Confidence 9887 444444
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=2.6e-19 Score=178.43 Aligned_cols=208 Identities=18% Similarity=0.161 Sum_probs=169.1
Q ss_pred CCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEc
Q 007339 376 DLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKL 455 (607)
Q Consensus 376 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l 455 (607)
...+++.|++++|.+....+.+.++++|++|++++|.++.+|..++++++|++|++++|.++.+|.. ++++++|+.|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEEC
Confidence 3578999999999887444489999999999999999999999999999999999999999988765 599999999999
Q ss_pred ccCcchhhhhHHH---------hhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchhhhhhccccccccc
Q 007339 456 SFGNEALRETVEE---------AASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLE 526 (607)
Q Consensus 456 ~~~~~~~~~~~~~---------l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~ 526 (607)
++|+...... .. +..++ +|++|+++.|.+..++..+.. +..|+.+.+..+. .. ..+..+.+++
T Consensus 158 ~~n~~~~~~p-~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~N~-l~---~l~~~l~~l~ 229 (328)
T 4fcg_A 158 RACPELTELP-EPLASTDASGEHQGLV-NLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSP-LS---ALGPAIHHLP 229 (328)
T ss_dssp EEETTCCCCC-SCSEEEC-CCCEEEST-TCCEEEEEEECCCCCCGGGGG--CTTCCEEEEESSC-CC---CCCGGGGGCT
T ss_pred CCCCCccccC-hhHhhccchhhhccCC-CCCEEECcCCCcCcchHhhcC--CCCCCEEEccCCC-CC---cCchhhccCC
Confidence 9876443222 22 33488 999999999999877766443 4678988887432 21 2334578899
Q ss_pred ccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEecccchhhhhhc
Q 007339 527 VDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLKNLFSL 602 (607)
Q Consensus 527 ~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~lp~~ 602 (607)
+|+.|+|++|++.+..+. +..+++|+.|++++|...+.+|.. + ..+++|++|+|++|+.++.+|+.
T Consensus 230 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~--~--------~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD--I--------HRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp TCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT--G--------GGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh--h--------hcCCCCCEEeCCCCCchhhccHH
Confidence 999999999988765544 778899999999999988876632 2 67899999999999999988864
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=3e-19 Score=178.83 Aligned_cols=194 Identities=17% Similarity=0.149 Sum_probs=109.4
Q ss_pred CCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 355 NGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
+++++|++++|.+..++ ..+..+++|++|++++|.+....| .+.++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 56777777777777554 357777777777777777666555 67777777777777777777666544 677777777
Q ss_pred CCcCCcCCCccccCCCCCCEEEcccCcchhh-hhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecc
Q 007339 433 SLQLKKFPTGILPRLRNLYKLKLSFGNEALR-ETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSES 511 (607)
Q Consensus 433 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 511 (607)
+|.++.+++..+.++++|+.|++++|..... ..+..+..+ +|+.|+++.|.+..++..+. ..|+.+.+..+.
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~- 204 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNK- 204 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSC-
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEECcCCCCCccCcccc----CCCCEEECCCCc-
Confidence 7777777776667777777777777654321 111222222 45555555555544433221 223433333111
Q ss_pred hhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeee
Q 007339 512 WMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRV 559 (607)
Q Consensus 512 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~ 559 (607)
.....+..+.++++|+.|+|++|.+.+..+. +..+++|+.|++++|
T Consensus 205 --i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 205 --IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp --CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS
T ss_pred --CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC
Confidence 0111122344445555555555544443331 344444555555544
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.78 E-value=5.3e-19 Score=192.40 Aligned_cols=140 Identities=28% Similarity=0.360 Sum_probs=83.4
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hhHH-hccC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EVLE-CMEM 422 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~-~~~~ 422 (607)
++...|..+++|+.|++++|.++.+|..+..+++|++|++++|.+....| .+.++++|++|++++|.+. .+|. .++.
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 55555677777777777777777777777777777777777776665555 5666666666666666554 4443 2555
Q ss_pred CCCCCeeeccCCcCCcCC--CccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 423 LENLSHLYLSSLQLKKFP--TGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 423 l~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
+++|++|++++|.++..+ +..+.++++|++|++++|..... .+..+..++ +|+.|+++.|.+.
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~-~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECP-QLELLDLAFTRLK 413 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCT-TCSEEECTTCCEE
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCc-cCCeEECCCCcCC
Confidence 666666666666555543 33345556666666665543221 123444555 5555555555544
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.78 E-value=6.6e-19 Score=185.68 Aligned_cols=234 Identities=17% Similarity=0.107 Sum_probs=133.0
Q ss_pred cchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEM 422 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~ 422 (607)
+|...|.++++|+.|++++|.+..+ +..|..+++|++|++++|.+....+ .+.++++|++|++++|+++.+|. .+.+
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 174 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTT
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcc
Confidence 3444444455555555555554432 2344455555555555554444333 45555555555555555554443 3455
Q ss_pred CCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcce
Q 007339 423 LENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSK 502 (607)
Q Consensus 423 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 502 (607)
+++|+.|++++|.+..+++..+.++++|+.|++++|....... ....... +|+.|+++.|.+..++... ...+..|+
T Consensus 175 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~-~L~~L~l~~n~l~~~~~~~-~~~l~~L~ 251 (477)
T 2id5_A 175 LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-PNCLYGL-NLTSLSITHCNLTAVPYLA-VRHLVYLR 251 (477)
T ss_dssp CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-TTTTTTC-CCSEEEEESSCCCSCCHHH-HTTCTTCC
T ss_pred cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-cccccCc-cccEEECcCCcccccCHHH-hcCccccC
Confidence 5555555555555555555445555555555555543222211 1222334 6666666666666544321 12235577
Q ss_pred eEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCcccccccccccccc
Q 007339 503 NYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKF 581 (607)
Q Consensus 503 ~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~ 581 (607)
.|++..+. .....+..|.++++|+.|+|++|.+....+. +..+++|+.|++++|. ++.++. ..+ ..
T Consensus 252 ~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~--------~~ 318 (477)
T 2id5_A 252 FLNLSYNP---ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEE-SVF--------HS 318 (477)
T ss_dssp EEECCSSC---CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCG-GGB--------SC
T ss_pred eeECCCCc---CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCH-hHc--------CC
Confidence 77766322 1123345678889999999999998866443 6778999999999984 454442 122 67
Q ss_pred ccccceEEEecccc
Q 007339 582 SHDLKVLRFHYCHN 595 (607)
Q Consensus 582 ~~~L~~L~l~~c~~ 595 (607)
+++|++|++++++-
T Consensus 319 l~~L~~L~l~~N~l 332 (477)
T 2id5_A 319 VGNLETLILDSNPL 332 (477)
T ss_dssp GGGCCEEECCSSCE
T ss_pred CcccCEEEccCCCc
Confidence 89999999988773
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.1e-18 Score=170.63 Aligned_cols=201 Identities=17% Similarity=0.108 Sum_probs=143.4
Q ss_pred CCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCc-hhhh-HHhccCCCCCCee
Q 007339 354 MNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTW-IEEV-LECMEMLENLSHL 429 (607)
Q Consensus 354 l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~-l~~l-~~~~~~l~~L~~L 429 (607)
.++|+.|++++|.++.++ ..|..+++|++|++++|.+....+ .+.++++|++|++++|. +..+ |..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468899999999988776 468888999999999888777666 78889999999999986 7777 5578888999999
Q ss_pred eccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEee
Q 007339 430 YLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLS 509 (607)
Q Consensus 430 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 509 (607)
++++|.++.+++..+.++++|+.|++++|..... ....+..++ +|++|+++.|.+..++.... .....|+.+.+..+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLG-NLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQN 187 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSS
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-CHhHhccCC-CccEEECCCCcccccCHHHh-cCccccCEEECCCC
Confidence 9999999888887788899999999998765432 224577788 99999998888765443211 11234555555422
Q ss_pred cchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeec
Q 007339 510 ESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVD 560 (607)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 560 (607)
. .....+..|.++++|+.|+|++|.+.+.+.. +..+++|+.|++++|+
T Consensus 188 ~---l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 188 R---VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp C---CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred c---ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 1 1112234555667777777777766654432 5556667777777765
No 28
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.77 E-value=1.3e-18 Score=169.19 Aligned_cols=135 Identities=21% Similarity=0.186 Sum_probs=117.1
Q ss_pred CCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH-HhccCCCCCCeeec
Q 007339 355 NGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL-ECMEMLENLSHLYL 431 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l 431 (607)
++|++|++++|.++.++. .+..+++|++|++++|.+....+ .+.++++|++|++++|.++.++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 579999999999997765 78999999999999998877666 7899999999999999999776 46899999999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFN 490 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~ 490 (607)
++|.+..+++..++++++|++|++++|.......+..+..++ +|++|+++.|.+..++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIY 165 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEEC
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCC
Confidence 999999998877899999999999998765533346788899 9999999999886543
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.77 E-value=1.1e-18 Score=182.86 Aligned_cols=240 Identities=17% Similarity=0.096 Sum_probs=149.9
Q ss_pred cccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-c--ccCCCCCCEEeccCCchhhh-HH
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-S--LAKLLALQYLDLEGTWIEEV-LE 418 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~--~~~l~~L~~L~l~~~~l~~l-~~ 418 (607)
+.++...|.++++|++|++++|.+..+ |..+..+++|++|++++|.+....+ . +.++++|++|++++|.++.+ |.
T Consensus 68 ~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 68 LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence 456666788888888888888888855 6678888888888888888776444 3 78888888888888888866 43
Q ss_pred h-ccCCCCCCeeeccCCcCCcCCCccccCC----------------------------------CCCCEEEcccCcchhh
Q 007339 419 C-MEMLENLSHLYLSSLQLKKFPTGILPRL----------------------------------RNLYKLKLSFGNEALR 463 (607)
Q Consensus 419 ~-~~~l~~L~~L~l~~~~l~~~~~~~~~~l----------------------------------~~L~~L~l~~~~~~~~ 463 (607)
. ++++++|++|++++|.++..++..+..+ ++|++|++++|.....
T Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence 3 7788888888888888877766544433 5677777776654322
Q ss_pred hhHHHhhcc---------------------------------------cccccEEEeeecCccccc-cccccccCCccee
Q 007339 464 ETVEEAASL---------------------------------------SDGLDYFEGCFSKLKDFN-RYVKSTDGRGSKN 503 (607)
Q Consensus 464 ~~~~~l~~l---------------------------------------~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~ 503 (607)
. +..+... + +|+.|+++.|.+.... ..+. .+..|+.
T Consensus 228 ~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~--~l~~L~~ 303 (455)
T 3v47_A 228 M-AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS-GVKTCDLSKSKIFALLKSVFS--HFTDLEQ 303 (455)
T ss_dssp H-HHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS-CCCEEECCSSCCCEECTTTTT--TCTTCCE
T ss_pred c-hhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc-CceEEEecCccccccchhhcc--cCCCCCE
Confidence 2 1222211 3 4555555555544322 1111 1234555
Q ss_pred EEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccccc
Q 007339 504 YCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFS 582 (607)
Q Consensus 504 l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~ 582 (607)
+++..+. .....+..|.++++|+.|+|++|.+.+..+. +..+++|+.|++++|. ++.++ ...+ ..+
T Consensus 304 L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~--------~~l 370 (455)
T 3v47_A 304 LTLAQNE---INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALG-DQSF--------LGL 370 (455)
T ss_dssp EECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEEC-TTTT--------TTC
T ss_pred EECCCCc---ccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccC-hhhc--------ccc
Confidence 5554211 1122334566667777777777766544332 5566777777777774 23322 1122 567
Q ss_pred cccceEEEecccchhhhhh
Q 007339 583 HDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 583 ~~L~~L~l~~c~~l~~lp~ 601 (607)
++|++|++++|. ++++|.
T Consensus 371 ~~L~~L~L~~N~-l~~~~~ 388 (455)
T 3v47_A 371 PNLKELALDTNQ-LKSVPD 388 (455)
T ss_dssp TTCCEEECCSSC-CSCCCT
T ss_pred ccccEEECCCCc-cccCCH
Confidence 888888888863 455554
No 30
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1.6e-19 Score=178.98 Aligned_cols=230 Identities=13% Similarity=0.030 Sum_probs=168.8
Q ss_pred ccchhhhcCCCCceEEEccCCCCc--cCCcccc-------CCccCcEeecccccCCCCCC-cc--cCCCCCCEEeccCCc
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIE--VLPSSIS-------DLTNLRSLLLRWCGRLKRVP-SL--AKLLALQYLDLEGTW 412 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~--~l~~~~~-------~l~~L~~L~l~~~~~~~~~~-~~--~~l~~L~~L~l~~~~ 412 (607)
.+|..+... |+.|++++|.+. .+|..+. .+++|++|++++|.+....| .+ ..+++|++|++++|.
T Consensus 56 ~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 56 ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132 (312)
T ss_dssp CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB
T ss_pred ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC
Confidence 567664433 788888888875 4555444 68899999999999887777 54 889999999999999
Q ss_pred hhhhHHhccCC-----CCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhh-HHHh--hcccccccEEEeeec
Q 007339 413 IEEVLECMEML-----ENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRET-VEEA--ASLSDGLDYFEGCFS 484 (607)
Q Consensus 413 l~~l~~~~~~l-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l--~~l~~~L~~L~l~~~ 484 (607)
++.+|..++.+ ++|++|++++|.++.+++..++++++|++|++++|....... +..+ ..++ +|++|+++.|
T Consensus 133 l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~L~~N 211 (312)
T 1wwl_A 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNA 211 (312)
T ss_dssp CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCT-TCCEEECTTS
T ss_pred CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCC-CCCEEECCCC
Confidence 88777666665 899999999999999988888999999999999887544322 3344 7888 9999999999
Q ss_pred Ccccccccccc--ccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCc
Q 007339 485 KLKDFNRYVKS--TDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDV 562 (607)
Q Consensus 485 ~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 562 (607)
.+...+..... ....+|+.+++..+. .........+..+++|+.|+|++|.+...+..+. ++|+.|++++|. +
T Consensus 212 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l 286 (312)
T 1wwl_A 212 GMETPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-L 286 (312)
T ss_dssp CCCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-C
T ss_pred cCcchHHHHHHHHhcCCCCCEEECCCCc--CCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-C
Confidence 88754433221 123557777766322 1111112345567899999999999985544333 889999999984 4
Q ss_pred ccccCccccccccccccccccccceEEEeccc
Q 007339 563 ASLNDVLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 563 ~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
+.+|. + ..+++|++|++++++
T Consensus 287 ~~~p~---~--------~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 287 DRNPS---P--------DELPQVGNLSLKGNP 307 (312)
T ss_dssp CSCCC---T--------TTSCEEEEEECTTCT
T ss_pred CCChh---H--------hhCCCCCEEeccCCC
Confidence 55442 4 678999999999875
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=3.6e-18 Score=185.81 Aligned_cols=148 Identities=17% Similarity=0.154 Sum_probs=108.8
Q ss_pred cccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH-Hhc
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL-ECM 420 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~-~~~ 420 (607)
..+++..|.++++|++|++++|.++.+ |..|.++++|++|++++|.+....| .+.++++|++|++++|.++.++ ..+
T Consensus 45 ~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 124 (606)
T 3vq2_A 45 KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124 (606)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC
T ss_pred CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccccc
Confidence 335655688899999999999988866 4578889999999999988877767 7889999999999999888776 468
Q ss_pred cCCCCCCeeeccCCcCCcCC-CccccCCCCCCEEEcccCcchhhh--hHHHhhcccccccEEEeeecCcccccc
Q 007339 421 EMLENLSHLYLSSLQLKKFP-TGILPRLRNLYKLKLSFGNEALRE--TVEEAASLSDGLDYFEGCFSKLKDFNR 491 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~~L~~L~l~~~~~~~~~~ 491 (607)
+++++|++|++++|.++... +..++++++|++|++++|...... .+..+..++..+.+|+++.|.+..++.
T Consensus 125 ~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 125 GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence 88999999999999887533 445688999999999987654321 122333332013366666666655443
No 32
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=2.6e-18 Score=186.93 Aligned_cols=213 Identities=14% Similarity=0.078 Sum_probs=156.0
Q ss_pred cccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhh-HHhc
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEV-LECM 420 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~~ 420 (607)
..+++..|.++++|++|++++|.+..+ |..|.++++|++|++++|.+....| .+.++++|++|++++|.++.+ |..+
T Consensus 46 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~ 125 (606)
T 3t6q_A 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125 (606)
T ss_dssp SEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCC
T ss_pred CcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchh
Confidence 345555689999999999999999865 6789999999999999999888777 899999999999999999987 4578
Q ss_pred cCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhccccccc--EEEeeecCccccccccccccC
Q 007339 421 EMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLD--YFEGCFSKLKDFNRYVKSTDG 498 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~--~L~l~~~~~~~~~~~~~~~~~ 498 (607)
+++++|++|++++|.++.++...+..+++|++|++++|.... .....+..++ +|+ .|+++.|.+...+......
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~-~L~~l~L~l~~n~l~~~~~~~~~~-- 201 (606)
T 3t6q_A 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQ-QATNLSLNLNGNDIAGIEPGAFDS-- 201 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTT-TCCSEEEECTTCCCCEECTTTTTT--
T ss_pred ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhc-ccceeEEecCCCccCccChhHhhh--
Confidence 999999999999999998764444569999999999986543 3346778888 888 7888888876644322111
Q ss_pred CcceeEEEEee-------------------------------------------------cchhhhhhcccccccccccc
Q 007339 499 RGSKNYCLVLS-------------------------------------------------ESWMYYMFIRDLITDLEVDK 529 (607)
Q Consensus 499 ~~L~~l~l~~~-------------------------------------------------~~~~~~~~~~~~~~~l~~L~ 529 (607)
..|+.+.+... .........+..|.++++|+
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 281 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence 11222211100 01111112233466778888
Q ss_pred eeeeeeeccCCCCCcccCCcccceeeeeeec
Q 007339 530 SVRLFACKICEREEPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 530 ~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (607)
+|+|++|.+...+..+..+++|++|++++|.
T Consensus 282 ~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 282 ELDLTATHLSELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp EEECTTSCCSCCCSSCCSCTTCCEEECTTCC
T ss_pred EEeccCCccCCCChhhcccccCCEEECccCC
Confidence 8888888777665556667778888887774
No 33
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=4.6e-18 Score=164.70 Aligned_cols=196 Identities=18% Similarity=0.213 Sum_probs=99.6
Q ss_pred ceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeeeccCC
Q 007339 357 LKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLYLSSL 434 (607)
Q Consensus 357 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~ 434 (607)
.+.++++++.++.+|..+. ++|+.|++++|.+....+ .+.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4455555555555554332 345555555555444333 455555555555555555555443 344555555555555
Q ss_pred cCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchhh
Q 007339 435 QLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWMY 514 (607)
Q Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 514 (607)
.++.+++..+.++++|+.|++++|..... ....+..++ +|++|+++.|.+..++.... .....|+.+.+..+. .
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~---l 169 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLT-KLTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQ---L 169 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSC---C
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCc-CCCEEECCCCcCCccCHhHc-cCCcccceeEecCCc---C
Confidence 55555555455555555555555433221 112344455 55555555555443322110 011223333332110 0
Q ss_pred hhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeec
Q 007339 515 YMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVD 560 (607)
Q Consensus 515 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 560 (607)
....+..|.++++|+.|+|++|.+...+.. +..+++|+.|++++|+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 011223355667888888888877765543 5667778888888876
No 34
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=1.6e-18 Score=193.22 Aligned_cols=247 Identities=17% Similarity=0.032 Sum_probs=191.5
Q ss_pred cccccchhhhc-CCCCceEEEccCCCCc-cCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hhH
Q 007339 342 LERRIPECFFV-HMNGLKVLNLSHTDIE-VLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EVL 417 (607)
Q Consensus 342 ~~~~~~~~~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~ 417 (607)
+.+.+|..+.. .+++|+.|++++|.+. .+|..+..+++|++|++++|.+....| .+.++++|++|++++|.++ .+|
T Consensus 380 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 459 (768)
T 3rgz_A 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP 459 (768)
T ss_dssp EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC
Confidence 34445555322 1778999999999888 778889999999999999999888888 8999999999999999988 778
Q ss_pred HhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc-cccccccc
Q 007339 418 ECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD-FNRYVKST 496 (607)
Q Consensus 418 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~~~~~~ 496 (607)
..++.+++|++|++++|.+++..+..++++++|+.|++++|.... ..+..+..++ +|+.|+++.|.+.+ ++..+..
T Consensus 460 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~- 536 (768)
T 3rgz_A 460 QELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLE-NLAILKLSNNSFSGNIPAELGD- 536 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCT-TCCEEECCSSCCEEECCGGGGG-
T ss_pred HHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC-cCChHHhcCC-CCCEEECCCCcccCcCCHHHcC-
Confidence 889999999999999999997777778999999999999987543 3346788999 99999999999874 5554443
Q ss_pred cCCcceeEEEEeecch---hh-----------------------------------------------------------
Q 007339 497 DGRGSKNYCLVLSESW---MY----------------------------------------------------------- 514 (607)
Q Consensus 497 ~~~~L~~l~l~~~~~~---~~----------------------------------------------------------- 514 (607)
+..|+.+++..+.-. ..
T Consensus 537 -l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 615 (768)
T 3rgz_A 537 -CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNI 615 (768)
T ss_dssp -CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCT
T ss_pred -CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 355776666532100 00
Q ss_pred -----hhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccccccccceE
Q 007339 515 -----YMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVL 588 (607)
Q Consensus 515 -----~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L 588 (607)
....+..+..+++|+.|+|++|++.+..+. +..+++|+.|++++|...+.+|. .+ +.+++|++|
T Consensus 616 ~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--~l--------~~L~~L~~L 685 (768)
T 3rgz_A 616 TSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD--EV--------GDLRGLNIL 685 (768)
T ss_dssp TSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG--GG--------GGCTTCCEE
T ss_pred ccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh--HH--------hCCCCCCEE
Confidence 000122355678899999999999876655 78889999999999976656552 22 778999999
Q ss_pred EEecccchhhhhhc
Q 007339 589 RFHYCHNLKNLFSL 602 (607)
Q Consensus 589 ~l~~c~~l~~lp~~ 602 (607)
|+++|.--..+|..
T Consensus 686 dLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 686 DLSSNKLDGRIPQA 699 (768)
T ss_dssp ECCSSCCEECCCGG
T ss_pred ECCCCcccCcCChH
Confidence 99999877777753
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=3.3e-18 Score=168.93 Aligned_cols=192 Identities=18% Similarity=0.191 Sum_probs=146.7
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+..+++|+.|++++|.+..++ .+..+++|++|++++|.+....+ +.++++|++|++++|.++.++ .+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence 346788999999999988887 58889999999999887765544 888999999999999888775 688899999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
+++|.++.+++ +..+++|+.|++++|....... +..++ +|+.|+++.|.+..++. ...+..|+.+.+..+.
T Consensus 114 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~-~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 114 LTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP---LAGLT-NLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNK 184 (308)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GGGCT-TCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred CCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc---ccCCC-CccEEEccCCcCCCChh---hcCCCCCCEEECCCCc
Confidence 99999888765 6899999999999887554332 77888 99999999888876555 2234457776665322
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeec
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (607)
... . ..+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|+
T Consensus 185 -l~~--~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 185 -ISD--I--SPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp -CCC--C--GGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred -cCc--C--hhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 111 1 125667888888888888876553 5667888888888885
No 36
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=8.6e-19 Score=190.88 Aligned_cols=238 Identities=12% Similarity=0.092 Sum_probs=144.6
Q ss_pred ccch-hhhcCCCCceEEEccCCCCc-cCCccccCCccCcEeecccccCCCCCC-cccCCCC-CCEEeccCCchhhhHHhc
Q 007339 345 RIPE-CFFVHMNGLKVLNLSHTDIE-VLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLA-LQYLDLEGTWIEEVLECM 420 (607)
Q Consensus 345 ~~~~-~~~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~-L~~L~l~~~~l~~l~~~~ 420 (607)
.+|. ..+.++++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+| .+.++++ |++|++++|.++.+|..+
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhh
Confidence 3554 23566777777777777776 666 6666777777777776655 444 6667776 777777777777666655
Q ss_pred cCCC--CCCeeeccCCcCCcCCCcccc-------CCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccccc
Q 007339 421 EMLE--NLSHLYLSSLQLKKFPTGILP-------RLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNR 491 (607)
Q Consensus 421 ~~l~--~L~~L~l~~~~l~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~ 491 (607)
+.+. +|+.|++++|.+++..+..++ .+++|+.|++++|... ......+..++ +|+.|+++.|.+..++.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~-~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGS-PLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTC-CCSEEECCSSCCSBCCS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCC-CCCEEECCCCCCCCcCH
Confidence 5543 677777777776665555455 6667777777776654 22223455577 78888887777766554
Q ss_pred cccccc------CCcceeEEEEeecchhhhhhcccccc--cccccceeeeeeeccCCCCCcccCCcccceeeeeeec---
Q 007339 492 YVKSTD------GRGSKNYCLVLSESWMYYMFIRDLIT--DLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVD--- 560 (607)
Q Consensus 492 ~~~~~~------~~~L~~l~l~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~--- 560 (607)
...... +..|+.+++..+. .. ..+..+. .+++|+.|+|++|.+.+.+..+..+++|+.|++++|.
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~-l~---~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNK-LT---KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSC-CC---BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTT
T ss_pred HHhccccccccccCCccEEECcCCc-CC---ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccc
Confidence 433221 1146665555221 11 2334443 6777888888888777654445667777777775433
Q ss_pred ---CcccccCccccccccccccccccccceEEEecccchhhhhh
Q 007339 561 ---DVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 561 ---~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 601 (607)
..+.+|. .+ ..+++|++|++++|+- +.||.
T Consensus 551 ~N~l~~~~p~------~l----~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 551 GNRTLREWPE------GI----TLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp CCBCCCCCCT------TG----GGCSSCCEEECCSSCC-CBCCS
T ss_pred cCcccccChH------HH----hcCCCCCEEECCCCcC-CccCH
Confidence 2222221 11 4567777777776654 55554
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.76 E-value=4.5e-18 Score=174.33 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.6
Q ss_pred cchhhhcCCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEM 422 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~ 422 (607)
++...|..+++|++|++++|.+..++ ..+..+++|++|++++|.+....+ .+.++++|++|++++|.++.+++ .++.
T Consensus 84 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 163 (390)
T 3o6n_A 84 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163 (390)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS
T ss_pred cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccC
Confidence 45555777888888888888877664 356778888888888877664444 35778888888888887776644 4777
Q ss_pred CCCCCeeeccCCcCCcCCC
Q 007339 423 LENLSHLYLSSLQLKKFPT 441 (607)
Q Consensus 423 l~~L~~L~l~~~~l~~~~~ 441 (607)
+++|++|++++|.++.++.
T Consensus 164 l~~L~~L~l~~n~l~~~~~ 182 (390)
T 3o6n_A 164 TTSLQNLQLSSNRLTHVDL 182 (390)
T ss_dssp CTTCCEEECCSSCCSBCCG
T ss_pred CCCCCEEECCCCcCCcccc
Confidence 7888888888887776653
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=7.5e-19 Score=171.84 Aligned_cols=237 Identities=18% Similarity=0.116 Sum_probs=176.6
Q ss_pred ccccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeeccccc-CCCCCC-cccCCCCCCEEeccCCchhhhH-H
Q 007339 343 ERRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCG-RLKRVP-SLAKLLALQYLDLEGTWIEEVL-E 418 (607)
Q Consensus 343 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~~~l~~l~-~ 418 (607)
...++...|..+++|+.|++++|.++.+ |..+..+++|++|++++|. +....+ .+.++++|++|++++|.++.++ .
T Consensus 44 i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 123 (285)
T 1ozn_A 44 ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh
Confidence 3346666789999999999999999976 6689999999999999997 444445 7999999999999999999774 5
Q ss_pred hccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccc-cccccccc
Q 007339 419 CMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDF-NRYVKSTD 497 (607)
Q Consensus 419 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~-~~~~~~~~ 497 (607)
.+.++++|++|++++|.++.+++..++++++|+.|++++|..... ....+..++ +|+.|+++.|.+... +..+. .
T Consensus 124 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~--~ 199 (285)
T 1ozn_A 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLH-SLDRLLLHQNRVAHVHPHAFR--D 199 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCT-TCCEEECCSSCCCEECTTTTT--T
T ss_pred HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-CHHHhcCcc-ccCEEECCCCcccccCHhHcc--C
Confidence 688999999999999999999988889999999999999865432 224578899 999999999998775 33332 2
Q ss_pred CCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCcccccccccc
Q 007339 498 GRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVN 577 (607)
Q Consensus 498 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~ 577 (607)
...|+.+++..+. . ....+..+..+++|+.|+|++|.+...........+++.+....+.-.-..|.- + .
T Consensus 200 l~~L~~L~l~~n~-l--~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~--l-~---- 269 (285)
T 1ozn_A 200 LGRLMTLYLFANN-L--SALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR--L-A---- 269 (285)
T ss_dssp CTTCCEEECCSSC-C--SCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG--G-T----
T ss_pred cccccEeeCCCCc-C--CcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH--h-C----
Confidence 4568887776332 1 122334577889999999999998765544344456677666655322222211 1 0
Q ss_pred ccccccccceEEEeccc
Q 007339 578 IGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 578 ~~~~~~~L~~L~l~~c~ 594 (607)
+..+..+...++.+|.
T Consensus 270 -g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 270 -GRDLKRLAANDLQGCA 285 (285)
T ss_dssp -TCBGGGSCGGGSCCC-
T ss_pred -CcChhhcCHHHhccCC
Confidence 1345666666777773
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.75 E-value=7.7e-19 Score=173.72 Aligned_cols=212 Identities=17% Similarity=0.184 Sum_probs=170.4
Q ss_pred ccccchhhhcCCCCceEEEccCCCCccC---CccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHH-
Q 007339 343 ERRIPECFFVHMNGLKVLNLSHTDIEVL---PSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLE- 418 (607)
Q Consensus 343 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~- 418 (607)
...+|..+|.++++|+.|++++|.++.+ +..+..+++|++|++++|.+....+.+.++++|++|++++|.++.++.
T Consensus 40 l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~ 119 (306)
T 2z66_A 40 LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 119 (306)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTT
T ss_pred cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccc
Confidence 3458888899999999999999998855 566778999999999999876543478999999999999999998764
Q ss_pred -hccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccc-cccccc
Q 007339 419 -CMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFN-RYVKST 496 (607)
Q Consensus 419 -~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~-~~~~~~ 496 (607)
.+..+++|++|++++|.+...++..+.++++|++|++++|.......+..+..++ +|+.|+++.|.+.... ..+.
T Consensus 120 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~-- 196 (306)
T 2z66_A 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFN-- 196 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTT--
T ss_pred hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhc--
Confidence 6889999999999999999888888899999999999998765534446678899 9999999999987753 3332
Q ss_pred cCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccC-Ccccceeeeeeec
Q 007339 497 DGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVL-PEDVQYLEMIRVD 560 (607)
Q Consensus 497 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~-~~~L~~L~l~~~~ 560 (607)
...+|+.+.+..+. ........+.++++|+.|+|++|.+.+..+. +.. +++|+.|++++|+
T Consensus 197 ~l~~L~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 197 SLSSLQVLNMSHNN---FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTSC---CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCCc---cCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 23568887776322 1122334577889999999999999876543 444 4699999999997
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=4.9e-18 Score=183.83 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=74.3
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEM 422 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~ 422 (607)
+++..|..+++|++|++++|.++.+|. .|+.+++|++|++++|.+....+ .+.++++|++|++++|.++.+++ .++.
T Consensus 90 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 90 IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169 (597)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence 455457788888888888888886654 46888888888888887775555 46788888888888888886654 5788
Q ss_pred CCCCCeeeccCCcCCcCCC
Q 007339 423 LENLSHLYLSSLQLKKFPT 441 (607)
Q Consensus 423 l~~L~~L~l~~~~l~~~~~ 441 (607)
+++|++|++++|.++.++.
T Consensus 170 l~~L~~L~L~~N~l~~~~~ 188 (597)
T 3oja_B 170 TTSLQNLQLSSNRLTHVDL 188 (597)
T ss_dssp CTTCCEEECTTSCCSBCCG
T ss_pred CCcCcEEECcCCCCCCcCh
Confidence 8888888888888877654
No 41
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=8.8e-19 Score=174.01 Aligned_cols=222 Identities=14% Similarity=0.131 Sum_probs=126.3
Q ss_pred hhhcCCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCC
Q 007339 349 CFFVHMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLS 427 (607)
Q Consensus 349 ~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~ 427 (607)
.++..+++|+.|++++|.++.++ ..+..+++|++|++++|.+....+ +..+++|++|++++|.++.++ .+++|+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~ 102 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIE 102 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcC
Confidence 34556677777777777777655 467777777777777776654433 677777777777777766554 236666
Q ss_pred eeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEE
Q 007339 428 HLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLV 507 (607)
Q Consensus 428 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 507 (607)
+|++++|.++.+++. .+++|+.|++++|...... ...+..++ +|+.|+++.|.+..............|+.+.+.
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~-~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLR-DLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGG-GBCTGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCcc-chhhhccC-CCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 666666666666543 3456666666666543322 13445566 666666666666553322111122445555554
Q ss_pred eecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccce
Q 007339 508 LSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKV 587 (607)
Q Consensus 508 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~ 587 (607)
.+. ... . .....+++|+.|+|++|.+.+.++.+..+++|+.|++++|. ++.+|.. + ..+++|+.
T Consensus 178 ~N~-l~~--~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~--~--------~~l~~L~~ 241 (317)
T 3o53_A 178 YNF-IYD--V--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA--L--------RFSQNLEH 241 (317)
T ss_dssp TSC-CCE--E--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT--C--------CCCTTCCE
T ss_pred CCc-Ccc--c--ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhH--h--------hcCCCCCE
Confidence 221 100 0 11223566666666666666544445555666666666663 3343321 1 44566666
Q ss_pred EEEecccch
Q 007339 588 LRFHYCHNL 596 (607)
Q Consensus 588 L~l~~c~~l 596 (607)
|++++|+-.
T Consensus 242 L~l~~N~~~ 250 (317)
T 3o53_A 242 FDLRGNGFH 250 (317)
T ss_dssp EECTTCCCB
T ss_pred EEccCCCcc
Confidence 666666544
No 42
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=3e-18 Score=166.15 Aligned_cols=178 Identities=22% Similarity=0.301 Sum_probs=127.9
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHh-ccCCCCCCee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHL 429 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L 429 (607)
...+++|+.|++++|.+..++ .+..+++|++|++++|.+.. ++.+.++++|++|++++|.++.+++. ++.+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 446788888888888888766 47788888889988887654 45788888888999988888877654 6788888999
Q ss_pred eccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEee
Q 007339 430 YLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLS 509 (607)
Q Consensus 430 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 509 (607)
++++|.++.+++..++++++|+.|++++|.... .....+..++ +|+.|+++.|.+..++.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~-~L~~L~l~~n~l~~~~~------------------ 174 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLT-NLTELDLSYNQLQSLPE------------------ 174 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT-TCCEEECCSSCCCCCCT------------------
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCc-cCHHHhccCc-cCCEEECCCCCcCccCH------------------
Confidence 998888888888877888888888888876542 2224467788 88888888887654322
Q ss_pred cchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeec
Q 007339 510 ESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVD 560 (607)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 560 (607)
..+.++++|+.|+|++|.+.+..+. +..+++|+.|++++|+
T Consensus 175 ----------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 175 ----------GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ----------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 1223345566666666666554433 4455666666666663
No 43
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1.6e-17 Score=174.39 Aligned_cols=84 Identities=27% Similarity=0.338 Sum_probs=38.5
Q ss_pred cCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeec
Q 007339 352 VHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYL 431 (607)
Q Consensus 352 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l 431 (607)
..+++|++|++++|.++.++. +..+++|++|++++|.+....+ +.++++|++|++++|.++.+++ +.++++|++|++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLEL 141 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEE
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEEC
Confidence 344455555555554444443 4444455555554444333322 4444444444444444444433 444444444444
Q ss_pred cCCcCCc
Q 007339 432 SSLQLKK 438 (607)
Q Consensus 432 ~~~~l~~ 438 (607)
++|.+..
T Consensus 142 ~~n~l~~ 148 (466)
T 1o6v_A 142 SSNTISD 148 (466)
T ss_dssp EEEEECC
T ss_pred CCCccCC
Confidence 4444333
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=6.9e-18 Score=175.72 Aligned_cols=210 Identities=19% Similarity=0.154 Sum_probs=171.0
Q ss_pred ccccchhhhcCCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-h
Q 007339 343 ERRIPECFFVHMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-C 419 (607)
Q Consensus 343 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~ 419 (607)
...++...|.++++|+.|++++|.++.++ ..|..+++|++|++++|.+....+ .+.++++|++|++++|.++.+|. .
T Consensus 76 i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 155 (440)
T 3zyj_A 76 IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYA 155 (440)
T ss_dssp CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTT
T ss_pred CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHH
Confidence 34466666899999999999999999776 578999999999999998887666 79999999999999999998876 6
Q ss_pred ccCCCCCCeeeccCC-cCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccC
Q 007339 420 MEMLENLSHLYLSSL-QLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDG 498 (607)
Q Consensus 420 ~~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~ 498 (607)
+.++++|++|++++| .+..+++..|.++++|+.|++++|+.... ..+..++ +|+.|+++.|.+..+.... ....
T Consensus 156 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~-~~~l 230 (440)
T 3zyj_A 156 FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLTPLI-KLDELDLSGNHLSAIRPGS-FQGL 230 (440)
T ss_dssp TTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC---CCCTTCS-SCCEEECTTSCCCEECTTT-TTTC
T ss_pred hhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc---cccCCCc-ccCEEECCCCccCccChhh-hccC
Confidence 889999999999995 57888888889999999999999876533 2477888 9999999999987753321 1224
Q ss_pred CcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeec
Q 007339 499 RGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVD 560 (607)
Q Consensus 499 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 560 (607)
.+|+.+.+..+ ......+..|.++++|+.|+|++|++...+.. +..+++|+.|++++|+
T Consensus 231 ~~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 231 MHLQKLWMIQS---QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCCEEECTTC---CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ccCCEEECCCC---ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 55777776522 22233456788899999999999999876654 6778999999999997
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.74 E-value=9.8e-18 Score=167.74 Aligned_cols=222 Identities=17% Similarity=0.124 Sum_probs=163.5
Q ss_pred CCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhh-HHhccCCCCCCeeecc
Q 007339 355 NGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEV-LECMEMLENLSHLYLS 432 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~ 432 (607)
.+++.++++++.++.+|..+. ++|++|++++|.+....+ .+.++++|++|++++|.++.+ |..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 479999999999999997664 689999999999887766 899999999999999999977 6689999999999999
Q ss_pred CCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecch
Q 007339 433 SLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESW 512 (607)
Q Consensus 433 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 512 (607)
+|.++.+|...+ ++|++|++++|..... ....+..++ +|+.|+++.|.+.............+|+.+.+..+. .
T Consensus 111 ~n~l~~l~~~~~---~~L~~L~l~~n~i~~~-~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~-l 184 (332)
T 2ft3_A 111 KNHLVEIPPNLP---SSLVELRIHDNRIRKV-PKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-L 184 (332)
T ss_dssp SSCCCSCCSSCC---TTCCEEECCSSCCCCC-CSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSB-C
T ss_pred CCcCCccCcccc---ccCCEEECCCCccCcc-CHhHhCCCc-cCCEEECCCCccccCCCCcccccCCccCEEECcCCC-C
Confidence 999999988653 8999999999875432 234578899 999999999988642211111111256666555221 1
Q ss_pred hhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEe
Q 007339 513 MYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFH 591 (607)
Q Consensus 513 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 591 (607)
.. .+..+ .++|+.|+|++|.+...... +..+++|+.|++++|. ++.++. ..+ ..+++|++|+++
T Consensus 185 ~~---l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~-~~~--------~~l~~L~~L~L~ 249 (332)
T 2ft3_A 185 TG---IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIEN-GSL--------SFLPTLRELHLD 249 (332)
T ss_dssp SS---CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCT-TGG--------GGCTTCCEEECC
T ss_pred Cc---cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCCh-hHh--------hCCCCCCEEECC
Confidence 11 12222 27899999999999876643 7778999999999984 333331 112 456667777776
Q ss_pred cccchhhhh
Q 007339 592 YCHNLKNLF 600 (607)
Q Consensus 592 ~c~~l~~lp 600 (607)
+|. ++.+|
T Consensus 250 ~N~-l~~lp 257 (332)
T 2ft3_A 250 NNK-LSRVP 257 (332)
T ss_dssp SSC-CCBCC
T ss_pred CCc-CeecC
Confidence 653 33444
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=8e-18 Score=175.91 Aligned_cols=207 Identities=19% Similarity=0.154 Sum_probs=170.0
Q ss_pred ccchhhhcCCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hcc
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CME 421 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~ 421 (607)
.++...|.++++|+.|++++|.++.++ ..|.++++|++|++++|.+....+ .+.++++|++|++++|.++.+|. .+.
T Consensus 89 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 168 (452)
T 3zyi_A 89 MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN 168 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTT
T ss_pred eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHh
Confidence 355556899999999999999999765 678999999999999999887666 68999999999999999998876 688
Q ss_pred CCCCCCeeeccCC-cCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccccc-ccccccCC
Q 007339 422 MLENLSHLYLSSL-QLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNR-YVKSTDGR 499 (607)
Q Consensus 422 ~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~-~~~~~~~~ 499 (607)
++++|+.|++++| .+..++...+.++++|+.|++++|+.... ..+..++ +|+.|+++.|.+..+.. .+. ...
T Consensus 169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~--~l~ 242 (452)
T 3zyi_A 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM---PNLTPLV-GLEELEMSGNHFPEIRPGSFH--GLS 242 (452)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC---CCCTTCT-TCCEEECTTSCCSEECGGGGT--TCT
T ss_pred cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc---ccccccc-cccEEECcCCcCcccCccccc--Ccc
Confidence 9999999999995 57888888889999999999999876543 3477888 99999999999887543 322 245
Q ss_pred cceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeec
Q 007339 500 GSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVD 560 (607)
Q Consensus 500 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 560 (607)
.|+.+.+..+ ......+..|.++++|+.|+|++|++...+.. +..+++|+.|++++|+
T Consensus 243 ~L~~L~L~~n---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 243 SLKKLWVMNS---QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECTTS---CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCC---cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 6777776522 22223456688899999999999999876654 6778999999999997
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=178.23 Aligned_cols=103 Identities=26% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 355 NGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
++|++|++++|.++.++ ..|..+++|++|++++|.+....| .+.++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 44455555555444443 234444555555555444444333 444455555555555544444433 44445555555
Q ss_pred CCcCCcCC-CccccCCCCCCEEEcccCc
Q 007339 433 SLQLKKFP-TGILPRLRNLYKLKLSFGN 459 (607)
Q Consensus 433 ~~~l~~~~-~~~~~~l~~L~~L~l~~~~ 459 (607)
+|.++.++ +..++++++|++|++++|.
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred CCccccccchhhhccCCcceEEEecCcc
Confidence 55444422 2233444455555444443
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=2.6e-18 Score=180.63 Aligned_cols=218 Identities=14% Similarity=0.132 Sum_probs=160.0
Q ss_pred CCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeec
Q 007339 353 HMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYL 431 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l 431 (607)
.+++|+.|++++|.++.++ ..|..+++|++|++++|.+....| +..+++|++|++++|.++.+|. .++|+.|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3458999999999998765 578899999999999988766555 8889999999999998887663 388999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSES 511 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 511 (607)
++|.++.+++. .+++|+.|++++|...... ...+..++ +|+.|+++.|.+...........+..|+.|.+..+.
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~-~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~- 180 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLR-DLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF- 180 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGG-GBCGGGGS-SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCC-chhhcCCC-CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-
Confidence 99988888764 4678899999987654432 24567788 899999998888764322111124567777766332
Q ss_pred hhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEe
Q 007339 512 WMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFH 591 (607)
Q Consensus 512 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~ 591 (607)
... . .....+++|+.|+|++|.+.+.++.+..+++|+.|++++|. ++.+|.. + ..+++|+.|+++
T Consensus 181 l~~--~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--l--------~~l~~L~~L~l~ 245 (487)
T 3oja_A 181 IYD--V--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA--L--------RFSQNLEHFDLR 245 (487)
T ss_dssp CCE--E--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT--C--------CCCTTCCEEECT
T ss_pred ccc--c--cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchh--h--------ccCCCCCEEEcC
Confidence 111 1 22335788999999999888766656777889999999885 4444421 2 667899999999
Q ss_pred cccch
Q 007339 592 YCHNL 596 (607)
Q Consensus 592 ~c~~l 596 (607)
+|+-.
T Consensus 246 ~N~l~ 250 (487)
T 3oja_A 246 GNGFH 250 (487)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 88765
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=173.44 Aligned_cols=219 Identities=13% Similarity=0.047 Sum_probs=149.2
Q ss_pred ccchhhhcCCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH--hc
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE--CM 420 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~--~~ 420 (607)
.+|...|.++++|+.|++++|.++.++ ..|..+++|++|++++|.+....+ .+.++++|++|++++|.++.+|. .+
T Consensus 66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 145 (353)
T 2z80_A 66 YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145 (353)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSC
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhh
Confidence 355555778888888888888887654 457788888888888887665444 47788888888888888877776 57
Q ss_pred cCCCCCCeeeccCC-cCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCC
Q 007339 421 EMLENLSHLYLSSL-QLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGR 499 (607)
Q Consensus 421 ~~l~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~ 499 (607)
.++++|++|++++| .+..+++..++++++|+.|++++|..... .+..+..++ +|++|+++.|.+..++..... ...
T Consensus 146 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~-~~~ 222 (353)
T 2z80_A 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQ-NVSHLILHMKQHILLLEIFVD-VTS 222 (353)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCS-EEEEEEEECSCSTTHHHHHHH-HTT
T ss_pred ccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc-CHHHHhccc-cCCeecCCCCccccchhhhhh-hcc
Confidence 77888888888887 46777666677788888888877654322 234566667 777777777766554433221 123
Q ss_pred cceeEEEEeecch----------------------------hhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcc
Q 007339 500 GSKNYCLVLSESW----------------------------MYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPED 550 (607)
Q Consensus 500 ~L~~l~l~~~~~~----------------------------~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~ 550 (607)
.|+.+++..+.-. ......+..+.++++|+.|+|++|.+...+.. +..+++
T Consensus 223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 302 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTS 302 (353)
T ss_dssp TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCC
Confidence 4555555422100 00011234567789999999999999876655 478899
Q ss_pred cceeeeeeecCccccc
Q 007339 551 VQYLEMIRVDDVASLN 566 (607)
Q Consensus 551 L~~L~l~~~~~l~~l~ 566 (607)
|+.|++++|+...+.+
T Consensus 303 L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 303 LQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCEEECCSSCBCCCHH
T ss_pred CCEEEeeCCCccCcCC
Confidence 9999999997544433
No 50
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=173.29 Aligned_cols=223 Identities=14% Similarity=0.126 Sum_probs=150.8
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+..+++|++|++++|.++.+| ++.+++|++|++++|.+... + +.++++|++|++++|.++.+| ++.+++|++|+
T Consensus 60 l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 60 IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEE
Confidence 678889999999999888876 78888899999998876654 3 788888999999998888775 78888899999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
+++|.+++++ ++++++|+.|++++|...... .+..++ +|+.|+++.|.+..++ ...+..|+.+.+..+.
T Consensus 134 l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~-~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~ 202 (457)
T 3bz5_A 134 CARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQT-QLTTLDCSFNKITELD----VSQNKLLNRLNCDTNN 202 (457)
T ss_dssp CTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCT-TCCEEECCSSCCCCCC----CTTCTTCCEEECCSSC
T ss_pred CCCCccceec---cccCCcCCEEECCCCCccccc---ccccCC-cCCEEECCCCccceec----cccCCCCCEEECcCCc
Confidence 9988888874 478888888888887433322 356677 8888888888777654 2223446666554221
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccc------------cc
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLV------------NI 578 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~------------~~ 578 (607)
... ..+..+++|+.|+|++|.+.+.+ +..+++|+.|++++|. ++.++ ...+ ..|. ++
T Consensus 203 -l~~-----~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~-l~~~~-~~~l-~~L~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 203 -ITK-----LDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNP-LTELD-VSTL-SKLTTLHCIQTDLLEIDL 271 (457)
T ss_dssp -CSC-----CCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTC-TTCCEEECTTCCCSCCCC
T ss_pred -CCe-----eccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCc-CCCcC-HHHC-CCCCEEeccCCCCCEEEC
Confidence 111 13556677777777777666543 4555666666666663 22222 1000 0000 00
Q ss_pred ----------cccccccceEEEecccchhhhhh
Q 007339 579 ----------GKFSHDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 579 ----------~~~~~~L~~L~l~~c~~l~~lp~ 601 (607)
...+++|+.|++++|+.++.+|.
T Consensus 272 ~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 272 THNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp TTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCCccCCcccccccccCCEEECCCCcccceecc
Confidence 03468888888888887777764
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.73 E-value=1.2e-17 Score=181.77 Aligned_cols=141 Identities=20% Similarity=0.210 Sum_probs=123.6
Q ss_pred ccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhh-HHhcc
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEV-LECME 421 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~ 421 (607)
.+|..+ .+++++|++++|.++.++. .|.++++|++|++++|.+....| .+.++++|++|++++|.++.+ |..++
T Consensus 25 ~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 25 KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SCCTTS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred cCCCCC---CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 356543 2789999999999997765 79999999999999999888777 799999999999999999977 67899
Q ss_pred CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccc
Q 007339 422 MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDF 489 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 489 (607)
++++|++|++++|.++.+++..++++++|++|++++|.......+..+..++ +|++|+++.|.+...
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-NLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-TCCEEECCSSCCCEE
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-CCCEEEccCCcceec
Confidence 9999999999999999999777899999999999998765544456788999 999999999987664
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=3e-19 Score=177.36 Aligned_cols=231 Identities=14% Similarity=0.052 Sum_probs=179.9
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLEN 425 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~ 425 (607)
+++..|..+++|+.|++++|.++.++. +..+++|++|++++|.+.. +...++|++|++++|.++.++.. .+++
T Consensus 49 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~----l~~~~~L~~L~l~~n~l~~~~~~--~~~~ 121 (317)
T 3o53_A 49 ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISRVSCS--RGQG 121 (317)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE----EEECTTCCEEECCSSCCSEEEEC--CCSS
T ss_pred CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc----ccCCCCcCEEECCCCccCCcCcc--ccCC
Confidence 555568999999999999999987664 8999999999999997553 33458999999999999977643 4789
Q ss_pred CCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHh-hcccccccEEEeeecCccccccccccccCCcceeE
Q 007339 426 LSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEA-ASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNY 504 (607)
Q Consensus 426 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l-~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 504 (607)
|++|++++|.++.+++..+..+++|+.|++++|....... ..+ ..++ +|++|+++.|.+..++.... ...|+.+
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~-~L~~L~L~~N~l~~~~~~~~---l~~L~~L 196 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-AELAASSD-TLEHLNLQYNFIYDVKGQVV---FAKLKTL 196 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG-GGGGGGTT-TCCEEECTTSCCCEEECCCC---CTTCCEE
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH-HHHhhccC-cCCEEECCCCcCcccccccc---cccCCEE
Confidence 9999999999999988788999999999999987654333 334 4688 99999999999987754432 4568888
Q ss_pred EEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCc-ccccCcccccccccccccccc
Q 007339 505 CLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDV-ASLNDVLPREQGLVNIGKFSH 583 (607)
Q Consensus 505 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~l~~~~~~~~ 583 (607)
++..+. .. ..+..+..+++|+.|+|++|.+...+..+..+++|+.|++++|+.. ..++ .++ ..++
T Consensus 197 ~Ls~N~-l~---~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~--~~~--------~~~~ 262 (317)
T 3o53_A 197 DLSSNK-LA---FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR--DFF--------SKNQ 262 (317)
T ss_dssp ECCSSC-CC---EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH--HHH--------HTCH
T ss_pred ECCCCc-CC---cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH--HHH--------hccc
Confidence 776332 11 1223477889999999999999876666778899999999999744 2222 122 6678
Q ss_pred ccceEEEecccchhhhhhc
Q 007339 584 DLKVLRFHYCHNLKNLFSL 602 (607)
Q Consensus 584 ~L~~L~l~~c~~l~~lp~~ 602 (607)
+|+.|++++|+.++..+..
T Consensus 263 ~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 263 RVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHHHHHHHSSSSC
T ss_pred cceEEECCCchhccCCchh
Confidence 8888888877777665443
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=4.7e-17 Score=162.65 Aligned_cols=236 Identities=13% Similarity=0.089 Sum_probs=149.2
Q ss_pred cccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHH-hcc
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLE-CME 421 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~ 421 (607)
..++...|.++++|++|++++|.++.+ |..+..+++|++|++++|.+......+. ++|++|++++|.++.+++ .+.
T Consensus 65 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~ 142 (330)
T 1xku_A 65 TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFN 142 (330)
T ss_dssp CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHT
T ss_pred CEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhc
Confidence 345655678888999999998888866 6778888899999998887663322333 678888888888876654 577
Q ss_pred CCCCCCeeeccCCcCCc--CCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccc-cccccccC
Q 007339 422 MLENLSHLYLSSLQLKK--FPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFN-RYVKSTDG 498 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~-~~~~~~~~ 498 (607)
++++|+.|++++|.++. ..+..+.++++|+.|++++|...... .. ..+ +|++|+++.|.+.... ..+. ..
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~--~~~-~L~~L~l~~n~l~~~~~~~~~--~l 215 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP--QG--LPP-SLTELHLDGNKITKVDAASLK--GL 215 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC--SS--CCT-TCSEEECTTSCCCEECTGGGT--TC
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC--cc--ccc-cCCEEECCCCcCCccCHHHhc--CC
Confidence 88888888888887753 44555677888888888877543211 11 125 7777777777766542 2222 23
Q ss_pred CcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccc
Q 007339 499 RGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNI 578 (607)
Q Consensus 499 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~ 578 (607)
..|+.+.+..+. .....+..+.++++|+.|+|++|.+...+..+..+++|+.|++++|. ++.++.-... . . ..
T Consensus 216 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~-~-~-~~ 288 (330)
T 1xku_A 216 NNLAKLGLSFNS---ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFC-P-P-GY 288 (330)
T ss_dssp TTCCEEECCSSC---CCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSS-C-S-SC
T ss_pred CCCCEEECCCCc---CceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcC-C-c-cc
Confidence 446666665221 11122334566777777788777777655556666777777777774 4444321110 0 0 00
Q ss_pred cccccccceEEEecccc
Q 007339 579 GKFSHDLKVLRFHYCHN 595 (607)
Q Consensus 579 ~~~~~~L~~L~l~~c~~ 595 (607)
....+.|+.|++++++-
T Consensus 289 ~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPV 305 (330)
T ss_dssp CTTSCCCSEEECCSSSS
T ss_pred ccccccccceEeecCcc
Confidence 01245677777776663
No 54
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=2.9e-17 Score=184.96 Aligned_cols=112 Identities=23% Similarity=0.223 Sum_probs=71.5
Q ss_pred hhhcCCCCceEEEccCCC-CccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhh-hHHh--ccC
Q 007339 349 CFFVHMNGLKVLNLSHTD-IEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEE-VLEC--MEM 422 (607)
Q Consensus 349 ~~~~~l~~L~~L~l~~~~-~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~-l~~~--~~~ 422 (607)
..|.++++|++|++++|. +..+ |..|.++++|++|+|++|.+....| .+.++.+|++|++++|.++. +|.. +++
T Consensus 42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence 346677777777777764 3344 4556677777777777776666555 66677777777777776663 3433 666
Q ss_pred CCCCCeeeccCCcCCcCCC-ccccCCCCCCEEEcccCcc
Q 007339 423 LENLSHLYLSSLQLKKFPT-GILPRLRNLYKLKLSFGNE 460 (607)
Q Consensus 423 l~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~ 460 (607)
+++|++|++++|.++.+++ ..++++++|++|++++|..
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 7777777777776665543 3456777777777776543
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.72 E-value=4.9e-18 Score=183.40 Aligned_cols=109 Identities=24% Similarity=0.284 Sum_probs=51.2
Q ss_pred hhcCCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccCCCCC
Q 007339 350 FFVHMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEMLENL 426 (607)
Q Consensus 350 ~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L 426 (607)
.|.++++|++|++++|.++.++ ..|..+++|++|++++|.+....| .+.++++|++|++++|+++.++. .++++++|
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 3445555555555555554442 234455555555555554444333 44455555555555554444433 34444555
Q ss_pred CeeeccCCcCCcCC-CccccCCCCCCEEEcccC
Q 007339 427 SHLYLSSLQLKKFP-TGILPRLRNLYKLKLSFG 458 (607)
Q Consensus 427 ~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~ 458 (607)
++|++++|.++.+. +..++++++|++|++++|
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 55555555444321 222344455555544444
No 56
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=6.6e-17 Score=169.62 Aligned_cols=216 Identities=19% Similarity=0.232 Sum_probs=166.7
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+.++++|+.|++++|.+..++ .+..+++|++|++++|.+....| +..+++|++|++++|.++.++ .+..+++|+.|+
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~ 249 (466)
T 1o6v_A 173 LANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLD 249 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEE
T ss_pred hccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEE
Confidence 678899999999999988775 47888999999999988765544 778899999999999888764 577889999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
+++|.++..++ +..+++|+.|++++|....... +..++ +|+.|+++.|.+...+. ...+..|+.+.+..+.
T Consensus 250 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~-~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 250 LANNQISNLAP--LSGLTKLTELKLGANQISNISP---LAGLT-ALTNLELNENQLEDISP---ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG---GTTCT-TCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSC
T ss_pred CCCCccccchh--hhcCCCCCEEECCCCccCcccc---ccCCC-ccCeEEcCCCcccCchh---hcCCCCCCEEECcCCc
Confidence 99999888876 6889999999999887554332 77888 99999999998877655 2234668887776432
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEE
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRF 590 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l 590 (607)
... . ..+..+++|+.|++++|.+.+. +.+..+++|+.|++++|.. ++++ .+ ..+++|+.|++
T Consensus 321 -l~~--~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l-~~~~---~~--------~~l~~L~~L~l 382 (466)
T 1o6v_A 321 -ISD--I--SPVSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQI-SDLT---PL--------ANLTRITQLGL 382 (466)
T ss_dssp -CSC--C--GGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC-CBCG---GG--------TTCTTCCEEEC
T ss_pred -CCC--c--hhhccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCcc-Cccc---hh--------hcCCCCCEEec
Confidence 111 1 1256789999999999988765 3466788899999999853 3322 23 67899999999
Q ss_pred ecccch
Q 007339 591 HYCHNL 596 (607)
Q Consensus 591 ~~c~~l 596 (607)
++|+-.
T Consensus 383 ~~n~~~ 388 (466)
T 1o6v_A 383 NDQAWT 388 (466)
T ss_dssp CCEEEE
T ss_pred cCCccc
Confidence 988643
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.71 E-value=5.4e-17 Score=175.16 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=98.6
Q ss_pred CCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH-HhccCCCCCCeeec
Q 007339 355 NGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL-ECMEMLENLSHLYL 431 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l 431 (607)
++++.|++++|.++.++ ..|..+++|++|++++|.+....+ .+.++++|++|++++|.++.++ ..++++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 46788888888887664 367788888888888887666555 6778888888888888877665 46778888888888
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
++|.++.+++..++++++|++|++++|.......+..+..++ +|++|+++.|.+..
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQS 163 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECTTSCCCE
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccC-CCCEEeCcCCccce
Confidence 888888777655678888888888877654433345677777 88888887776654
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=2.1e-17 Score=161.46 Aligned_cols=200 Identities=16% Similarity=0.066 Sum_probs=117.7
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHL 429 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L 429 (607)
+.++++++.++++++.++.+|..+. ++++.|++++|.+....+ .+.++++|++|++++|.++.++.. +.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 4556666666666666666665443 456666666666555444 566666666666666666655443 556666666
Q ss_pred eccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEee
Q 007339 430 YLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLS 509 (607)
Q Consensus 430 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 509 (607)
++++|.++.+|.. +..+++|+.|++++|..... ....+..++ +|+.|+++.|.+..++..... ...+|+.+.+..+
T Consensus 83 ~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N 158 (290)
T 1p9a_G 83 DLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSL-PLGALRGLG-ELQELYLKGNELKTLPPGLLT-PTPKLEKLSLANN 158 (290)
T ss_dssp ECCSSCCSSCCCC-TTTCTTCCEEECCSSCCCCC-CSSTTTTCT-TCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTS
T ss_pred ECCCCcCCcCchh-hccCCCCCEEECCCCcCccc-CHHHHcCCC-CCCEEECCCCCCCccChhhcc-cccCCCEEECCCC
Confidence 6666666665543 35666666666666544322 113455566 666666666666554332211 1233555444311
Q ss_pred cchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeec
Q 007339 510 ESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (607)
.........|.++++|+.|+|++|.+...+......++|+.|++++|+
T Consensus 159 ---~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 159 ---NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ---CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ---cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 111222344566788888888888888666555556678888888887
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.71 E-value=4.8e-17 Score=174.98 Aligned_cols=104 Identities=28% Similarity=0.259 Sum_probs=60.0
Q ss_pred CCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 355 NGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
++|++|++++|.++.++ ..|..+++|++|++++|.+....| .+.++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 55666666666665554 355666666666666665555444 455666666666666666555544 55666666666
Q ss_pred CCcCCcCC-CccccCCCCCCEEEcccCcc
Q 007339 433 SLQLKKFP-TGILPRLRNLYKLKLSFGNE 460 (607)
Q Consensus 433 ~~~l~~~~-~~~~~~l~~L~~L~l~~~~~ 460 (607)
+|.++.++ +..++++++|++|++++|..
T Consensus 130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp SSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCccccCchHhhcccCcccEEecCCCcc
Confidence 66665544 23445666666666665543
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.71 E-value=3.3e-17 Score=180.74 Aligned_cols=144 Identities=26% Similarity=0.258 Sum_probs=114.9
Q ss_pred cccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hc
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CM 420 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~ 420 (607)
..+|+..|.++++|++|++++|.++.+ |..+.++++|++|++++|.+....+ .+.++++|++|++++|.++.+++ .+
T Consensus 38 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 117 (680)
T 1ziw_A 38 RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF 117 (680)
T ss_dssp CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTT
T ss_pred CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHc
Confidence 346666788999999999999998866 5568889999999999988776655 68899999999999998887774 68
Q ss_pred cCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhh--cccccccEEEeeecCcccc
Q 007339 421 EMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAA--SLSDGLDYFEGCFSKLKDF 489 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~~L~~L~l~~~~~~~~ 489 (607)
+++++|++|++++|.++..++..++++++|++|++++|...... ...+. .++ +|+.|+++.|.+...
T Consensus 118 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~-~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 118 VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFANS-SLKKLELSSNQIKEF 186 (680)
T ss_dssp TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTC-EESEEECTTCCCCCB
T ss_pred cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC-HHHhhccccc-cccEEECCCCccccc
Confidence 89999999999999998888877889999999999987654322 23333 447 888888888776553
No 61
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=3.7e-17 Score=175.59 Aligned_cols=208 Identities=20% Similarity=0.192 Sum_probs=159.9
Q ss_pred cccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-c
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-M 420 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~ 420 (607)
..+|..++ ++|++|++++|.++.+ |..|..+++|++|++++|.+....| .+.++++|++|++++|.++.+++. +
T Consensus 18 ~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 18 TSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp SSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred ccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 34666543 7899999999999966 4679999999999999999888777 799999999999999999987764 9
Q ss_pred cCCCCCCeeeccCCcCCcCC-CccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc-cccccccccC
Q 007339 421 EMLENLSHLYLSSLQLKKFP-TGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD-FNRYVKSTDG 498 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~~~~~~~~ 498 (607)
+++++|++|++++|.++.++ +..++++++|++|++++|..........+..++ +|++|+++.|.+.. .+..+. ..
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~--~l 171 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-SLNELEIKALSLRNYQSQSLK--SI 171 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-EEEEEEEEETTCCEECTTTTT--TC
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-ccCeeeccCCcccccChhhhh--cc
Confidence 99999999999999998653 345799999999999998744444445788899 99999999999876 333333 23
Q ss_pred CcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCC----CcccCCcccceeeeeeec
Q 007339 499 RGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICERE----EPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 499 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~----~~~~~~~~L~~L~l~~~~ 560 (607)
..|+.+.+....... .....+..+++|+.|++++|.+.+.. .....+++|+.|++++|.
T Consensus 172 ~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 172 RDIHHLTLHLSESAF---LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp SEEEEEEEECSBSTT---HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred ccCceEecccCcccc---cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 458888777443211 11122345789999999999988642 124456778888887774
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=6.3e-17 Score=156.68 Aligned_cols=189 Identities=21% Similarity=0.148 Sum_probs=145.4
Q ss_pred ccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hcc
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CME 421 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~ 421 (607)
.+|..+ .++++.|++++|.++.++. .|..+++|++|++++|.+....+ .+.++++|++|++++|.++.+|+ .+.
T Consensus 30 ~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 106 (270)
T 2o6q_A 30 AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106 (270)
T ss_dssp SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc
Confidence 355542 2578999999999998775 68899999999999988776555 56889999999999999988875 468
Q ss_pred CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcc
Q 007339 422 MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGS 501 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 501 (607)
.+++|++|++++|.++.+++..++++++|+.|++++|..... ....+..++ +|+.|+++.|.+..++.... .....|
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~-~~l~~L 183 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLT-SLKELRLYNNQLKRVPEGAF-DKLTEL 183 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSCCSCCCTTTT-TTCTTC
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc-CHhHccCCc-ccceeEecCCcCcEeChhHh-ccCCCc
Confidence 899999999999999999988889999999999998865432 224577888 99999999998877654321 123557
Q ss_pred eeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCC
Q 007339 502 KNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICERE 542 (607)
Q Consensus 502 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 542 (607)
+.+.+..+. .....+..|..+++|+.|+|++|.+....
T Consensus 184 ~~L~L~~N~---l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 184 KTLKLDNNQ---LKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CEEECCSSC---CSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CEEECCCCc---CCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 777776321 11233445778899999999999886543
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=5.5e-17 Score=168.98 Aligned_cols=207 Identities=12% Similarity=0.064 Sum_probs=165.8
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+.++++|++|++++|.++.+| .+..+++|++|++++|.+... | +..+++|++|++++|.++.++ ++++++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 678999999999999999887 689999999999999987664 4 889999999999999999875 88999999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
+++|.+++++ ++++++|+.|++++|..... .+..++ +|++|+++.|...... .......|+.+++..+.
T Consensus 113 L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l----~l~~l~-~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 113 CDTNKLTKLD---VSQNPLLTYLNCARNTLTEI----DVSHNT-QLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCSSCCSCCC---CTTCTTCCEEECTTSCCSCC----CCTTCT-TCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSC
T ss_pred CCCCcCCeec---CCCCCcCCEEECCCCcccee----ccccCC-cCCEEECCCCCccccc---ccccCCcCCEEECCCCc
Confidence 9999999985 58999999999999876543 377889 9999999988543222 22334568887776332
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEE
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRF 590 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l 590 (607)
... -.+..+++|+.|++++|.+.+.. +..+++|+.|++++|. ++.+| + ..+++|++|++
T Consensus 182 -l~~-----l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~-l~~ip----~--------~~l~~L~~L~l 240 (457)
T 3bz5_A 182 -ITE-----LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNK-LTEID----V--------TPLTQLTYFDC 240 (457)
T ss_dssp -CCC-----CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC----C--------TTCTTCSEEEC
T ss_pred -cce-----eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCc-ccccC----c--------cccCCCCEEEe
Confidence 111 12678899999999999988752 6778999999999995 44444 2 55677777777
Q ss_pred eccc
Q 007339 591 HYCH 594 (607)
Q Consensus 591 ~~c~ 594 (607)
++|+
T Consensus 241 ~~N~ 244 (457)
T 3bz5_A 241 SVNP 244 (457)
T ss_dssp CSSC
T ss_pred eCCc
Confidence 7664
No 64
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1e-17 Score=167.99 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=107.6
Q ss_pred hcCC--CCceEEEccCCCCccCCccccCCccCcEeecccccCCCC-CC-cccCCCCCCEEeccCCchh-hhHHhccCCCC
Q 007339 351 FVHM--NGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKR-VP-SLAKLLALQYLDLEGTWIE-EVLECMEMLEN 425 (607)
Q Consensus 351 ~~~l--~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~l~~ 425 (607)
+..+ ++++.|++++|.+...+..+..+++|++|++++|.+... ++ .+.++++|++|++++|.++ ..+..++.+++
T Consensus 64 ~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~ 143 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143 (336)
T ss_dssp HHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTT
T ss_pred HHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCC
Confidence 4444 667777777776665554555667777777776665433 44 5666677777777777665 45556666777
Q ss_pred CCeeeccCC-cCCcC-CCccccCCCCCCEEEcccC-cchhhhhHHHhhcccccccEEEeeecC--cc--ccccccccccC
Q 007339 426 LSHLYLSSL-QLKKF-PTGILPRLRNLYKLKLSFG-NEALRETVEEAASLSDGLDYFEGCFSK--LK--DFNRYVKSTDG 498 (607)
Q Consensus 426 L~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~l~~l~~~L~~L~l~~~~--~~--~~~~~~~~~~~ 498 (607)
|++|++++| .++.. .+..+.++++|++|++++| ..........+..++.+|++|+++.|. +. .++..+. .+
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~--~~ 221 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--RC 221 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--HC
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--hC
Confidence 777777776 45531 1223456667777777766 443322233344443356677776663 21 1222221 13
Q ss_pred CcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCC--cccCCcccceeeeeee
Q 007339 499 RGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREE--PIVLPEDVQYLEMIRV 559 (607)
Q Consensus 499 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~l~~~ 559 (607)
++|+.+++..+..... .....+..+++|+.|+|++|....... .+..+++|+.|++++|
T Consensus 222 ~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKN--DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCSEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCEEeCCCCCcCCH--HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 4455555542210100 112234455666666666653111111 1334555666666655
No 65
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.70 E-value=2.5e-17 Score=181.68 Aligned_cols=157 Identities=22% Similarity=0.283 Sum_probs=129.2
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEM 422 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~ 422 (607)
+|..+ .+++++|++++|.++.++. .|.++++|++|++++|.+....| .+.++++|++|++++|.++.+|+ .+++
T Consensus 19 ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 19 VPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp CCSCS---CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccc---CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 56542 2789999999999998875 58999999999999999888777 78999999999999999999987 5999
Q ss_pred CCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccc-cccccCCcc
Q 007339 423 LENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRY-VKSTDGRGS 501 (607)
Q Consensus 423 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L 501 (607)
+++|++|++++|.++.+++..++++++|++|++++|..... .+..+..++ +|++|+++.|.+...+.. +.......|
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L 173 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST-KLGTQVQLE-NLQELLLSNNKIQALKSEELDIFANSSL 173 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCC-CCCSSSCCT-TCCEEECCSSCCCCBCHHHHGGGTTCEE
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCccccc-Cchhhcccc-cCCEEEccCCcccccCHHHhhccccccc
Confidence 99999999999999999988889999999999999865432 335577899 999999999988765432 222223446
Q ss_pred eeEEEE
Q 007339 502 KNYCLV 507 (607)
Q Consensus 502 ~~l~l~ 507 (607)
+.+++.
T Consensus 174 ~~L~L~ 179 (680)
T 1ziw_A 174 KKLELS 179 (680)
T ss_dssp SEEECT
T ss_pred cEEECC
Confidence 666554
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.69 E-value=1.5e-17 Score=164.61 Aligned_cols=200 Identities=17% Similarity=0.075 Sum_probs=147.4
Q ss_pred CCCCceEEEccCCCCc-cCCccc--cCCccCcEeecccccCCCCCCcccCC-----CCCCEEeccCCchhhhH-HhccCC
Q 007339 353 HMNGLKVLNLSHTDIE-VLPSSI--SDLTNLRSLLLRWCGRLKRVPSLAKL-----LALQYLDLEGTWIEEVL-ECMEML 423 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~l~-~~~~~l 423 (607)
++++|++|++++|.++ .+|..+ ..+++|++|++++|.+....+.+..+ ++|++|++++|.+..++ ..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 6889999999999988 677765 88899999999998877763266666 89999999999988776 578889
Q ss_pred CCCCeeeccCCcCCcC---CCc-cccCCCCCCEEEcccCcchhhh--hHHHhhcccccccEEEeeecCcccccccccccc
Q 007339 424 ENLSHLYLSSLQLKKF---PTG-ILPRLRNLYKLKLSFGNEALRE--TVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTD 497 (607)
Q Consensus 424 ~~L~~L~l~~~~l~~~---~~~-~~~~l~~L~~L~l~~~~~~~~~--~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~ 497 (607)
++|++|++++|.+.+. +.. .++++++|++|++++|...... ....+..++ +|+.|+++.|.+...........
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECCCCcCCcccchhhhhh
Confidence 9999999999986542 222 2378899999999988765322 223446778 99999999988877542222222
Q ss_pred CCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeec
Q 007339 498 GRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 498 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (607)
...|+.+.+..+. .. ..+..+. ++|+.|+|++|.+.+.+. +..+++|+.|++++|+
T Consensus 252 l~~L~~L~Ls~N~-l~---~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 252 PSQLNSLNLSFTG-LK---QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CTTCCEEECTTSC-CS---SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred cCCCCEEECCCCc-cC---hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 3457777766322 11 2233333 789999999999988744 7778999999999985
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.69 E-value=2.2e-16 Score=177.79 Aligned_cols=218 Identities=15% Similarity=0.086 Sum_probs=133.2
Q ss_pred chhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccCC
Q 007339 347 PECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEML 423 (607)
Q Consensus 347 ~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l 423 (607)
++..|..+++|+.|++++|.+..+ |..|..+++|++|++++|.+....| .+.++++|++|++++|.+..+++ .+..+
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 334466777777777777777644 3456677777777777776665555 66777777777777777665554 46667
Q ss_pred CCCCeeeccCCcCCcCCCc---------------cccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc
Q 007339 424 ENLSHLYLSSLQLKKFPTG---------------ILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 424 ~~L~~L~l~~~~l~~~~~~---------------~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
++|+.|++++|.++.++.. +-....+++.|++++|..........+..++ +|+.|+++.|.+..
T Consensus 362 ~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~-~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP-HLQILILNQNRFSS 440 (844)
T ss_dssp CCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT-TCCEEEEESCCCCC
T ss_pred CCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC-ccceeeCCCCcccc
Confidence 7777777777666554320 0011234555666665544444445566888 99999999988876
Q ss_pred cccccccccCCcceeEEEEeecchhh--hhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccc
Q 007339 489 FNRYVKSTDGRGSKNYCLVLSESWMY--YMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASL 565 (607)
Q Consensus 489 ~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l 565 (607)
.+..........|+.+.+..+.-... ....+..|.++++|+.|+|++|.+.+.++. +..+++|+.|++++|. ++.+
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l 519 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVL 519 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-CSSC
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC-CCcc
Confidence 54432222345577777763321100 012234466677777777777777765554 5667777777777773 4443
Q ss_pred c
Q 007339 566 N 566 (607)
Q Consensus 566 ~ 566 (607)
+
T Consensus 520 ~ 520 (844)
T 3j0a_A 520 S 520 (844)
T ss_dssp C
T ss_pred C
Confidence 3
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=3.2e-18 Score=179.92 Aligned_cols=220 Identities=15% Similarity=0.065 Sum_probs=171.3
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLEN 425 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~ 425 (607)
+++..|..+++|++|++++|.++..+. +..+++|++|++++|.+... ...++|++|++++|.++.++. ..+++
T Consensus 49 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l----~~~~~L~~L~L~~N~l~~~~~--~~l~~ 121 (487)
T 3oja_A 49 ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL----LVGPSIETLHAANNNISRVSC--SRGQG 121 (487)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE----EECTTCCEEECCSSCCCCEEE--CCCSS
T ss_pred CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC----CCCCCcCEEECcCCcCCCCCc--cccCC
Confidence 555568999999999999999986664 89999999999999976532 344899999999999997765 35789
Q ss_pred CCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhh-cccccccEEEeeecCccccccccccccCCcceeE
Q 007339 426 LSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAA-SLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNY 504 (607)
Q Consensus 426 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 504 (607)
|+.|++++|.++++++..++++++|+.|++++|...... +..+. .++ +|+.|+++.|.+...+... ....|+.|
T Consensus 122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~~l~-~L~~L~Ls~N~l~~~~~~~---~l~~L~~L 196 (487)
T 3oja_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-FAELAASSD-TLEHLNLQYNFIYDVKGQV---VFAKLKTL 196 (487)
T ss_dssp CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE-GGGGGGGTT-TCCEEECTTSCCCEEECCC---CCTTCCEE
T ss_pred CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC-hHHHhhhCC-cccEEecCCCccccccccc---cCCCCCEE
Confidence 999999999999998877899999999999998765433 34454 788 9999999999998775543 24568888
Q ss_pred EEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCc-ccccCcccccccccccccccc
Q 007339 505 CLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDV-ASLNDVLPREQGLVNIGKFSH 583 (607)
Q Consensus 505 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~~~~l~~~~~~~~ 583 (607)
++..+. .. ..+..+..+++|+.|+|++|.+.+.+..+..+++|+.|++++|+.. ..+|. ++ ..++
T Consensus 197 ~Ls~N~-l~---~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~--~~--------~~l~ 262 (487)
T 3oja_A 197 DLSSNK-LA---FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD--FF--------SKNQ 262 (487)
T ss_dssp ECCSSC-CC---EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH--HH--------TTCH
T ss_pred ECCCCC-CC---CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHH--HH--------HhCC
Confidence 876332 11 1223477889999999999999876666778899999999999743 22221 12 4567
Q ss_pred ccceEEEe
Q 007339 584 DLKVLRFH 591 (607)
Q Consensus 584 ~L~~L~l~ 591 (607)
.|+.|+++
T Consensus 263 ~L~~l~~~ 270 (487)
T 3oja_A 263 RVQTVAKQ 270 (487)
T ss_dssp HHHHHHHH
T ss_pred CCcEEecc
Confidence 77776665
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.68 E-value=4.2e-16 Score=166.11 Aligned_cols=125 Identities=19% Similarity=0.179 Sum_probs=110.1
Q ss_pred eEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhh-HHhccCCCCCCeeeccCCc
Q 007339 358 KVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEV-LECMEMLENLSHLYLSSLQ 435 (607)
Q Consensus 358 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~ 435 (607)
+++++++|.++.+|..+. ++|++|++++|.+....| .+.++++|++|++++|+++.+ |..++++++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 579999999999998766 899999999999887777 899999999999999999977 6689999999999999999
Q ss_pred CCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc
Q 007339 436 LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 436 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
++.+|.. .+++|++|++++|.......+..++.++ +|++|+++.|.+..
T Consensus 81 l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~-~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 81 LVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMS-QLKFLGLSTTHLEK 129 (520)
T ss_dssp CCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCT-TCCEEEEEESSCCG
T ss_pred eeecCcc---ccCCccEEeccCCccccccchhhhccCC-cceEEEecCcccch
Confidence 9998875 8999999999998865544446788899 99999999887753
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=1.3e-16 Score=155.06 Aligned_cols=186 Identities=17% Similarity=0.131 Sum_probs=141.9
Q ss_pred cccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hc
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CM 420 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~ 420 (607)
..++...|.++++|++|++++|.++.++. .+..+++|++|++++|.+....+ .+.++++|++|++++|++..++. .+
T Consensus 41 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 120 (276)
T 2z62_A 41 RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120 (276)
T ss_dssp CEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC
T ss_pred cccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc
Confidence 34566568899999999999999997764 68999999999999999887776 79999999999999999998776 68
Q ss_pred cCCCCCCeeeccCCcCCcCC-CccccCCCCCCEEEcccCcchhhhhHHHhhccccccc----EEEeeecCcccccccccc
Q 007339 421 EMLENLSHLYLSSLQLKKFP-TGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLD----YFEGCFSKLKDFNRYVKS 495 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~----~L~l~~~~~~~~~~~~~~ 495 (607)
+.+++|++|++++|.++.+. +..++++++|++|++++|...... ...+..++ +|+ .|+++.|.+..++.....
T Consensus 121 ~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~~ 198 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAFK 198 (276)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHH-TCTTCCEEEECCSSCCCEECTTSSC
T ss_pred ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC-HHHhhhhh-hccccceeeecCCCcccccCccccC
Confidence 99999999999999998854 556799999999999998754432 23344444 555 788888877543332111
Q ss_pred ccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeec
Q 007339 496 TDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVD 560 (607)
Q Consensus 496 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 560 (607)
..+|+.|+|++|.+...+.. +..+++|+.|++++|+
T Consensus 199 -----------------------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 199 -----------------------------EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp -----------------------------SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred -----------------------------CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 13466777777776655443 4556677777777665
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=3.7e-17 Score=155.30 Aligned_cols=196 Identities=17% Similarity=0.150 Sum_probs=144.7
Q ss_pred CCceEEEccCCCCccCCc-cccCCccCcEeeccccc-CCCCCC-cccCCCCCCEEeccC-CchhhhHH-hccCCCCCCee
Q 007339 355 NGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCG-RLKRVP-SLAKLLALQYLDLEG-TWIEEVLE-CMEMLENLSHL 429 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~~l~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L 429 (607)
++++.|++++|.++.+|. .|..+++|++|++++|. +....+ .+.++++|++|++++ |.++.+|+ .+..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 389999999999998876 68899999999999997 555555 788999999999998 88988875 57889999999
Q ss_pred eccCCcCCcCCCccccCCCCCC---EEEcccC-cchhhhhHHHhhccccccc-EEEeeecCccccccccccccCCcceeE
Q 007339 430 YLSSLQLKKFPTGILPRLRNLY---KLKLSFG-NEALRETVEEAASLSDGLD-YFEGCFSKLKDFNRYVKSTDGRGSKNY 504 (607)
Q Consensus 430 ~l~~~~l~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~l~~l~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~l 504 (607)
++++|.++.+|. +..+++|+ .|++++| ... ......+..++ +|+ .|+++.|.+..++..
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~-~L~~~L~l~~n~l~~i~~~------------ 174 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLC-NETLTLKLYNNGFTSVQGY------------ 174 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTB-SSEEEEECCSCCCCEECTT------------
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchh-hcCcccccchh-cceeEEEcCCCCCcccCHh------------
Confidence 999999998876 67888888 9999988 433 33334577888 999 999988876543322
Q ss_pred EEEeecchhhhhhcccccccccccceeeeeeec-cCCCCCc-ccCC-cccceeeeeeecCcccccCcccccccccccccc
Q 007339 505 CLVLSESWMYYMFIRDLITDLEVDKSVRLFACK-ICEREEP-IVLP-EDVQYLEMIRVDDVASLNDVLPREQGLVNIGKF 581 (607)
Q Consensus 505 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~-~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~ 581 (607)
.|.. ++|+.|+|++|. +...++. +..+ ++|+.|++++|. ++.+|. ..
T Consensus 175 ----------------~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~------------~~ 224 (239)
T 2xwt_C 175 ----------------AFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPS------------KG 224 (239)
T ss_dssp ----------------TTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCC------------TT
T ss_pred ----------------hcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCCh------------hH
Confidence 1122 457777777774 6544332 4555 778888888764 444442 34
Q ss_pred ccccceEEEecccch
Q 007339 582 SHDLKVLRFHYCHNL 596 (607)
Q Consensus 582 ~~~L~~L~l~~c~~l 596 (607)
+++|+.|++++|..|
T Consensus 225 ~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 225 LEHLKELIARNTWTL 239 (239)
T ss_dssp CTTCSEEECTTC---
T ss_pred hccCceeeccCccCC
Confidence 678888888887653
No 72
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1e-16 Score=161.34 Aligned_cols=228 Identities=13% Similarity=0.047 Sum_probs=173.5
Q ss_pred ccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC--cccCCCCCCE-EeccCCchhhhHH-h
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP--SLAKLLALQY-LDLEGTWIEEVLE-C 419 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~-L~l~~~~l~~l~~-~ 419 (607)
.+|..+ .++++.|++++|.|+.+|. .|.++++|++|+|++|.+...+| .+.++++|.. +.+++|+++.+++ .
T Consensus 23 ~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~ 99 (350)
T 4ay9_X 23 EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA 99 (350)
T ss_dssp SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence 466653 3679999999999999986 68999999999999999877666 6889998875 6667789998864 6
Q ss_pred ccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCC
Q 007339 420 MEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGR 499 (607)
Q Consensus 420 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~ 499 (607)
+..+++|++|++++|.++.+++..+....++..|++.+++.........+..+...++.|+++.|.+..++..... ..
T Consensus 100 f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~--~~ 177 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN--GT 177 (350)
T ss_dssp BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST--TE
T ss_pred hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc--cc
Confidence 8899999999999999999988776777888899987754333333344555543689999999999876655432 12
Q ss_pred cceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCcccccccccccc
Q 007339 500 GSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIG 579 (607)
Q Consensus 500 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~ 579 (607)
+|..+.+. ..+....+..+.|.++++|+.|+|++|++...+. ..+.+|++|.+.+|.+++.+|. +
T Consensus 178 ~L~~l~l~--~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~---l-------- 242 (350)
T 4ay9_X 178 QLDELNLS--DNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPT---L-------- 242 (350)
T ss_dssp EEEEEECT--TCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCC---T--------
T ss_pred chhHHhhc--cCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCC---c--------
Confidence 34444332 2233333445678899999999999999887654 4577899999999988888774 3
Q ss_pred ccccccceEEEec
Q 007339 580 KFSHDLKVLRFHY 592 (607)
Q Consensus 580 ~~~~~L~~L~l~~ 592 (607)
..+++|+.+++++
T Consensus 243 ~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 243 EKLVALMEASLTY 255 (350)
T ss_dssp TTCCSCCEEECSC
T ss_pred hhCcChhhCcCCC
Confidence 6689999999865
No 73
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=4.3e-16 Score=167.56 Aligned_cols=130 Identities=17% Similarity=0.224 Sum_probs=110.6
Q ss_pred CCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhh-HHhccCCCCCCeee
Q 007339 353 HMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEV-LECMEMLENLSHLY 430 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~ 430 (607)
.+...+++++++|.++.+|..+. ++|+.|++++|.+....+ .+.++++|++|++++|.++.+ |..++++++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 44556899999999999997665 899999999999888777 899999999999999999977 45799999999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
+++|.++.+|.. .+++|++|++++|.......+..+..++ +|++|+++.|.+..
T Consensus 107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLT-KLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCT-TCCEEEEECSBCCT
T ss_pred CCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccC-cccEEecCCCcccc
Confidence 999999998875 8999999999999865544335788899 99999999887653
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=3.6e-16 Score=154.22 Aligned_cols=175 Identities=23% Similarity=0.199 Sum_probs=145.6
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+..+++|++|++++|.+..++. +..+++|++|++++|.+.. ++.+.++++|++|++++|.++.++. +..+++|++|+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLY 135 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCC-chhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEE
Confidence 6789999999999999998887 8999999999999998654 5689999999999999999998875 89999999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
+++|.++.+++ ++.+++|+.|++++|....... +..++ +|+.|+++.|.+..++. ......|+.+.+..+.
T Consensus 136 l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~---l~~l~-~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP---LANLS-KLTTLKADDNKISDISP---LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCT-TCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSC
T ss_pred CCCCccCcCcc--ccCCCCccEEEccCCcCCCChh---hcCCC-CCCEEECCCCccCcChh---hcCCCCCCEEEccCCc
Confidence 99999999876 6899999999999987654332 78899 99999999999987665 2234568887776332
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCC
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICERE 542 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 542 (607)
... . ..+..+++|+.|+|++|.+...+
T Consensus 207 -l~~--~--~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 207 -ISD--V--SPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp -CCB--C--GGGTTCTTCCEEEEEEEEEECCC
T ss_pred -cCc--c--ccccCCCCCCEEEccCCeeecCC
Confidence 111 1 13678899999999999987644
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=3.2e-16 Score=149.93 Aligned_cols=128 Identities=22% Similarity=0.261 Sum_probs=75.2
Q ss_pred CceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccCCCCCCeeeccC
Q 007339 356 GLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEMLENLSHLYLSS 433 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~ 433 (607)
..+.++++++.++.+|..+. ++++.|++++|.+....+ .+.++++|++|++++|.++.+++ .+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 44556666666666665443 456666666666555555 56666666666666666665443 355666666666666
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 434 LQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 434 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
|.++.+++..+..+++|++|++++|..... ....+..++ +|+.|+++.|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~-~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLT-KLKELRLNTNQLQ 144 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCc-ChhHhccCC-cccEEECcCCcCC
Confidence 666666666566666666666666543321 113345556 6666666665554
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=1.9e-16 Score=153.38 Aligned_cols=179 Identities=20% Similarity=0.218 Sum_probs=146.8
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCe
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSH 428 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~ 428 (607)
+..+++|++|++++|.+..++ .+..+++|++|++++|.+....+ .+.++++|++|++++|.++.+++. ++.+++|++
T Consensus 59 l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 678999999999999999865 78999999999999998887666 689999999999999999988764 789999999
Q ss_pred eeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEe
Q 007339 429 LYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVL 508 (607)
Q Consensus 429 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~ 508 (607)
|++++|.++.+++..++++++|+.|++++|.... .....+..++ +|+.|+++.|.+...+.
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~-~L~~L~L~~N~l~~~~~----------------- 198 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLT-QLKDLRLYQNQLKSVPD----------------- 198 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT-TCCEEECCSSCCSCCCT-----------------
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCc-cCCEEECCCCcCCccCH-----------------
Confidence 9999999999999888999999999999987553 3334578889 99999999888754322
Q ss_pred ecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCccccc
Q 007339 509 SESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLN 566 (607)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~ 566 (607)
..+..+++|+.|+|++|.+.+ .+++|+.|+++.|...+.+|
T Consensus 199 -----------~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 199 -----------GVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp -----------TTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBB
T ss_pred -----------HHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCccc
Confidence 223445778888888887653 35567888877776555554
No 77
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.66 E-value=2.7e-16 Score=168.84 Aligned_cols=200 Identities=16% Similarity=0.119 Sum_probs=157.3
Q ss_pred CCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH-HhccCCCCCCeeec
Q 007339 354 MNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL-ECMEMLENLSHLYL 431 (607)
Q Consensus 354 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l 431 (607)
|+...+.+.+++.++.+|..+. ++|++|++++|.+....| .+.++++|++|++++|.++.++ ..++++++|++|++
T Consensus 4 C~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 4 CDASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp ECTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 3444456888899999998665 789999999999887777 8999999999999999999776 57999999999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecC-ccccccccccccCCcceeEEEEeec
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSK-LKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
++|.++++++..++++++|++|++++|.......+..+..++ +|++|+++.|. +..++.. ......+|+.+.+..+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALS 159 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETT
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-CccEEECCCCccccccCHh-hhhcccccCeeeccCCc
Confidence 999999999987899999999999998765433334678899 99999999998 4444321 12224558888777332
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeec
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVD 560 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 560 (607)
.....+..+..+++|+.|++++|.+...+.. ...+++|+.|++++|.
T Consensus 160 ---l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 160 ---LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp ---CCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCB
T ss_pred ---ccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCc
Confidence 1223456678889999999999986543332 3568899999999985
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.66 E-value=3.7e-16 Score=167.70 Aligned_cols=209 Identities=15% Similarity=0.048 Sum_probs=113.7
Q ss_pred CCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 353 HMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
.+++|++|++++|.++.+|. .+++|++|++++|.+... |. .+.+|+.|++++|+++.+|.. +++|++|+++
T Consensus 79 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l-~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls 149 (622)
T 3g06_A 79 LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHL-PA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVS 149 (622)
T ss_dssp CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCC-CC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCC-CC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECc
Confidence 35666666666666666664 456666666666654432 22 455666666666666665542 3666666666
Q ss_pred CCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccc---------------c
Q 007339 433 SLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKST---------------D 497 (607)
Q Consensus 433 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~---------------~ 497 (607)
+|.++.+|.. +.+|+.|++++|...... ..++ +|+.|+++.|.+..++...... .
T Consensus 150 ~N~l~~l~~~----~~~L~~L~L~~N~l~~l~-----~~~~-~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~ 219 (622)
T 3g06_A 150 DNQLASLPAL----PSELCKLWAYNNQLTSLP-----MLPS-GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPAL 219 (622)
T ss_dssp SSCCSCCCCC----CTTCCEEECCSSCCSCCC-----CCCT-TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCC
T ss_pred CCcCCCcCCc----cCCCCEEECCCCCCCCCc-----ccCC-CCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCC
Confidence 6666665431 233444444433322110 1224 5555555555544433221000 0
Q ss_pred CCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCcccccccccc
Q 007339 498 GRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVN 577 (607)
Q Consensus 498 ~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~ 577 (607)
..+|+.+.+..+. ... .+ ..+++|+.|+|++|.+...+. .+++|+.|++++|. ++.+|. .+
T Consensus 220 ~~~L~~L~Ls~N~-L~~---lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~--~l------ 280 (622)
T 3g06_A 220 PSGLKELIVSGNR-LTS---LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPE--SL------ 280 (622)
T ss_dssp CTTCCEEECCSSC-CSC---CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCCG--GG------
T ss_pred CCCCCEEEccCCc-cCc---CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCCH--HH------
Confidence 1234554444211 110 11 334777788888877765443 56778888888873 445442 12
Q ss_pred ccccccccceEEEecccchhhhhh
Q 007339 578 IGKFSHDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 578 ~~~~~~~L~~L~l~~c~~l~~lp~ 601 (607)
..+++|+.|++++|+--+.+|.
T Consensus 281 --~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 281 --IHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp --GGSCTTCEEECCSCCCCHHHHH
T ss_pred --hhccccCEEEecCCCCCCcCHH
Confidence 6789999999999986555443
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=1.6e-16 Score=150.79 Aligned_cols=197 Identities=11% Similarity=0.073 Sum_probs=146.0
Q ss_pred EccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCc-hhhhHH-hccCCCCCCeeeccC-CcC
Q 007339 361 NLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTW-IEEVLE-CMEMLENLSHLYLSS-LQL 436 (607)
Q Consensus 361 ~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~l 436 (607)
.+..+.++.+|. +. .+|++|++++|.+....+ .+.++++|++|++++|+ ++.+++ .+.++++|++|++++ |.+
T Consensus 17 ~v~c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 17 RVTCKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp EEEECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred eeEccCccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 333444777776 43 388999999988777666 78889999999999996 888876 688899999999998 889
Q ss_pred CcCCCccccCCCCCCEEEcccCcchhhhhHHHhhccccccc---EEEeeec-CccccccccccccCCcceeEEEEeecch
Q 007339 437 KKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLD---YFEGCFS-KLKDFNRYVKSTDGRGSKNYCLVLSESW 512 (607)
Q Consensus 437 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 512 (607)
+.+++..|.++++|+.|++++|...... .+..++ +|+ .|+++.| .+..++
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp---~~~~l~-~L~~L~~L~l~~N~~l~~i~---------------------- 147 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKMFP---DLTKVY-STDIFFILEITDNPYMTSIP---------------------- 147 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCSCC---CCTTCC-BCCSEEEEEEESCTTCCEEC----------------------
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCcccc---cccccc-ccccccEEECCCCcchhhcC----------------------
Confidence 9888887888999999999987654422 255666 666 8888777 543221
Q ss_pred hhhhhcccccccccccc-eeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccc-cccceEEE
Q 007339 513 MYYMFIRDLITDLEVDK-SVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFS-HDLKVLRF 590 (607)
Q Consensus 513 ~~~~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~-~~L~~L~l 590 (607)
+..|.++++|+ .|++++|.+...+......++|+.|++++|..++.++. ..+ ..+ ++|++|++
T Consensus 148 ------~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-~~~--------~~l~~~L~~L~l 212 (239)
T 2xwt_C 148 ------VNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-DAF--------GGVYSGPSLLDV 212 (239)
T ss_dssp ------TTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECT-TTT--------TTCSBCCSEEEC
T ss_pred ------cccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCH-HHh--------hccccCCcEEEC
Confidence 23455678899 99999998875554422237899999999976777662 223 667 99999999
Q ss_pred ecccchhhhhhc
Q 007339 591 HYCHNLKNLFSL 602 (607)
Q Consensus 591 ~~c~~l~~lp~~ 602 (607)
+++ .++.+|..
T Consensus 213 ~~N-~l~~l~~~ 223 (239)
T 2xwt_C 213 SQT-SVTALPSK 223 (239)
T ss_dssp TTC-CCCCCCCT
T ss_pred CCC-ccccCChh
Confidence 985 46667654
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=9.3e-17 Score=158.87 Aligned_cols=199 Identities=12% Similarity=0.036 Sum_probs=106.9
Q ss_pred ccCcEeecccccCCCCCC-cc--cCCCCCCEEeccCCchhh----hH-HhccCCCCCCeeeccCCcCCcCCCccccCCCC
Q 007339 378 TNLRSLLLRWCGRLKRVP-SL--AKLLALQYLDLEGTWIEE----VL-ECMEMLENLSHLYLSSLQLKKFPTGILPRLRN 449 (607)
Q Consensus 378 ~~L~~L~l~~~~~~~~~~-~~--~~l~~L~~L~l~~~~l~~----l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~ 449 (607)
++|++|++++|.+....| .+ .++++|++|++++|.++. ++ ..+..+++|++|++++|.+..+++..++++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 445555555555554444 33 555555555555555542 11 22344555555555555555555555555555
Q ss_pred CCEEEcccCcchhhhhH---HHhhcccccccEEEeeecCcccccccccc--ccCCcceeEEEEeecchhhhhhccccccc
Q 007339 450 LYKLKLSFGNEALRETV---EEAASLSDGLDYFEGCFSKLKDFNRYVKS--TDGRGSKNYCLVLSESWMYYMFIRDLITD 524 (607)
Q Consensus 450 L~~L~l~~~~~~~~~~~---~~l~~l~~~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 524 (607)
|++|++++|.......+ ..+..++ +|++|+++.|.+..++..... .....|+.|++..+. . ....+..+..
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l--~~~~p~~~~~ 246 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-L--RATVNPSAPR 246 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-C--CCCCCSCCSS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-C--CccchhhHHh
Confidence 55555555543322111 1123455 555555555555433322110 112334544444211 0 0111222222
Q ss_pred ---ccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccccccccccccceEEEeccc
Q 007339 525 ---LEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 525 ---l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
+++|++|+|++|.+...+... +++|+.|++++|. ++.+| .. ..+++|++|++++++
T Consensus 247 ~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~-l~~~~---~~--------~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 247 CMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNR-LNRAP---QP--------DELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCC-CCSCC---CT--------TSCCCCSCEECSSTT
T ss_pred ccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCc-CCCCc---hh--------hhCCCccEEECcCCC
Confidence 378999999999988654333 4799999999984 44433 23 668999999999876
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.64 E-value=8.1e-16 Score=165.05 Aligned_cols=208 Identities=18% Similarity=0.148 Sum_probs=143.0
Q ss_pred ccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCC
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLE 424 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~ 424 (607)
.+|..++ ++|+.|++++|.++.+|. .+++|++|++++|.+.. +|. .+++|++|++++|+++.+|. .++
T Consensus 54 ~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~l~~---~l~ 121 (622)
T 3g06_A 54 TLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV--LPPGLLELSIFSNPLTHLPA---LPS 121 (622)
T ss_dssp CCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC--CCTTCCEEEECSCCCCCCCC---CCT
T ss_pred ccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC--CCCCCCEEECcCCcCCCCCC---CCC
Confidence 4666543 799999999999999886 57899999999998664 444 78999999999999998877 678
Q ss_pred CCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeE
Q 007339 425 NLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNY 504 (607)
Q Consensus 425 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 504 (607)
+|+.|++++|+++.+|.. +++|+.|++++|...... ..++ +|+.|+++.|.+..++. ....|+.+
T Consensus 122 ~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~-----~~~~-~L~~L~L~~N~l~~l~~-----~~~~L~~L 186 (622)
T 3g06_A 122 GLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLP-----ALPS-ELCKLWAYNNQLTSLPM-----LPSGLQEL 186 (622)
T ss_dssp TCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCC-----CCCT-TCCEEECCSSCCSCCCC-----CCTTCCEE
T ss_pred CcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcC-----CccC-CCCEEECCCCCCCCCcc-----cCCCCcEE
Confidence 999999999999998763 589999999998654321 1345 89999999999887662 23447766
Q ss_pred EEEeecchhhhhhccccc-----------------ccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccC
Q 007339 505 CLVLSESWMYYMFIRDLI-----------------TDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLND 567 (607)
Q Consensus 505 ~l~~~~~~~~~~~~~~~~-----------------~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~ 567 (607)
.+..+. ... .+..+ ..+++|+.|+|++|.+...+ ..+++|+.|++++| .++.+|
T Consensus 187 ~Ls~N~-l~~---l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp- 257 (622)
T 3g06_A 187 SVSDNQ-LAS---LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN-RLTSLP- 257 (622)
T ss_dssp ECCSSC-CSC---CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCC-
T ss_pred ECCCCC-CCC---CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCC-CCCcCC-
Confidence 665321 111 01111 01245555555555555432 34455666666665 233333
Q ss_pred ccccccccccccccccccceEEEecccchhhhhh
Q 007339 568 VLPREQGLVNIGKFSHDLKVLRFHYCHNLKNLFS 601 (607)
Q Consensus 568 ~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~~lp~ 601 (607)
..+++|+.|++++| .|..||.
T Consensus 258 ------------~~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 258 ------------MLPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp ------------CCCTTCCEEECCSS-CCCSCCG
T ss_pred ------------cccccCcEEeCCCC-CCCcCCH
Confidence 23678888888887 4556654
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.63 E-value=3.5e-17 Score=167.35 Aligned_cols=235 Identities=14% Similarity=0.079 Sum_probs=167.6
Q ss_pred hcCCCCceEEEccCCCCcc-----CCccccCCccCcEeecccccCC---CCCC-c-------ccCCCCCCEEeccCCchh
Q 007339 351 FVHMNGLKVLNLSHTDIEV-----LPSSISDLTNLRSLLLRWCGRL---KRVP-S-------LAKLLALQYLDLEGTWIE 414 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~---~~~~-~-------~~~l~~L~~L~l~~~~l~ 414 (607)
+..+++|+.|++++|.+.. ++..+..+++|++|++++|... ..+| . +.++++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 6688999999999998873 3445778999999999987433 2334 3 368899999999999887
Q ss_pred h-----hHHhccCCCCCCeeeccCCcCCcCCCccc----cCC---------CCCCEEEcccCcchhhhhH---HHhhccc
Q 007339 415 E-----VLECMEMLENLSHLYLSSLQLKKFPTGIL----PRL---------RNLYKLKLSFGNEALRETV---EEAASLS 473 (607)
Q Consensus 415 ~-----l~~~~~~l~~L~~L~l~~~~l~~~~~~~~----~~l---------~~L~~L~l~~~~~~~~~~~---~~l~~l~ 473 (607)
. +|..+..+++|++|+|++|.++...+..+ ..+ ++|++|++++|........ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 77888999999999999999875443333 333 8999999999876533333 5677889
Q ss_pred ccccEEEeeecCccc--cccccc--cccCCcceeEEEEeecchhh--hhhcccccccccccceeeeeeeccCCCCC----
Q 007339 474 DGLDYFEGCFSKLKD--FNRYVK--STDGRGSKNYCLVLSESWMY--YMFIRDLITDLEVDKSVRLFACKICEREE---- 543 (607)
Q Consensus 474 ~~L~~L~l~~~~~~~--~~~~~~--~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~l~~L~~L~L~~~~~~~~~~---- 543 (607)
+|++|+++.|.+.. ...... ...+++|+.|.+..+. ... ....+..+..+++|+.|+|++|.+...+.
T Consensus 188 -~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 188 -LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp -TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred -CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 99999999998862 111111 1234568888876432 211 12234567788999999999998865421
Q ss_pred -cc--cCCcccceeeeeeecCcc----cccCccccccccccccccccccceEEEecccch
Q 007339 544 -PI--VLPEDVQYLEMIRVDDVA----SLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNL 596 (607)
Q Consensus 544 -~~--~~~~~L~~L~l~~~~~l~----~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l 596 (607)
.+ ..+++|+.|++++|..-. .++. . +..++++|++|++++|+--
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---~------l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKT---V------IDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---H------HHHHCTTCCEEECTTSBSC
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHH---H------HHhcCCCceEEEccCCcCC
Confidence 12 337899999999995222 1331 1 1144799999999998744
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=1.6e-15 Score=148.28 Aligned_cols=174 Identities=19% Similarity=0.174 Sum_probs=130.8
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+..+++|+.|++++|.+..++ .+..+++|++|++++|.+....+ +.++++|++|++++|.++.+|. +..+++|++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEE
T ss_pred hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEE
Confidence 446788999999999988886 47889999999999988766554 8889999999999998888654 88899999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
+++|.++.++ .+..+++|+.|++++|..... ..+..++ +|+.|+++.|.+...+. ...+..|+.+.+..+.
T Consensus 119 L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~---~~l~~l~-~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 119 LEHNGISDIN--GLVHLPQLESLYLGNNKITDI---TVLSRLT-KLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp CTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC---GGGGGCT-TCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred CCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc---hhhccCC-CCCEEEccCCccccchh---hcCCCccCEEECCCCc
Confidence 9999988874 358899999999998876543 4677888 99999999888876554 2223446666655221
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCC
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICER 541 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 541 (607)
... . ..+..+++|+.|++++|.+...
T Consensus 190 -i~~---l-~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 190 -ISD---L-RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -CCB---C-GGGTTCTTCSEEEEEEEEEECC
T ss_pred -CCC---C-hhhccCCCCCEEECcCCcccCC
Confidence 111 1 1256667777777777776643
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=2.2e-15 Score=147.29 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=128.0
Q ss_pred EEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCc
Q 007339 359 VLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKK 438 (607)
Q Consensus 359 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~ 438 (607)
.+.+..+.+..+. .+..+++|+.|++++|.+. .++.+..+++|++|++++|.++.+++ +.++++|++|++++|.++.
T Consensus 28 ~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~-~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 28 KDNLKKKSVTDAV-TQNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred HHHhcCCCccccc-chhhcCcccEEEccCCCcc-cChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 3345555555433 3567899999999998765 44678999999999999999998877 8999999999999999998
Q ss_pred CCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchhhhhhc
Q 007339 439 FPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWMYYMFI 518 (607)
Q Consensus 439 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 518 (607)
++. +..+++|+.|++++|..... ..+..++ +|+.|+++.|.+..+.. + ..+..|+.|.+..+. ... ..
T Consensus 105 ~~~--l~~l~~L~~L~L~~n~i~~~---~~l~~l~-~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~-l~~--~~ 172 (291)
T 1h6t_A 105 LSS--LKDLKKLKSLSLEHNGISDI---NGLVHLP-QLESLYLGNNKITDITV-L--SRLTKLDTLSLEDNQ-ISD--IV 172 (291)
T ss_dssp GGG--GTTCTTCCEEECTTSCCCCC---GGGGGCT-TCCEEECCSSCCCCCGG-G--GGCTTCSEEECCSSC-CCC--CG
T ss_pred Chh--hccCCCCCEEECCCCcCCCC---hhhcCCC-CCCEEEccCCcCCcchh-h--ccCCCCCEEEccCCc-ccc--ch
Confidence 765 68999999999999876543 4578899 99999999998876521 1 122345555444221 110 00
Q ss_pred ccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeec
Q 007339 519 RDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 519 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (607)
.+..+++|+.|+|++|.+...+ .+..+++|+.|++++|+
T Consensus 173 --~l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 173 --PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred --hhcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCc
Confidence 1445566666666666555432 24445556666666553
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.60 E-value=3.1e-15 Score=158.47 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=97.2
Q ss_pred CCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCC
Q 007339 355 NGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSL 434 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~ 434 (607)
.+++.|++++|.++.+|..+. ++|++|++++|.+. .+| ..+++|++|++++|+++.+|. +.+ +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 389999999999998887653 78999999999876 555 667899999999999998887 655 8999999999
Q ss_pred cCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccccc
Q 007339 435 QLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNR 491 (607)
Q Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~ 491 (607)
.++++|. .+++|+.|++++|....... .++ +|+.|+++.|.+..++.
T Consensus 131 ~l~~lp~----~l~~L~~L~Ls~N~l~~lp~-----~l~-~L~~L~Ls~N~L~~lp~ 177 (571)
T 3cvr_A 131 QLTMLPE----LPALLEYINADNNQLTMLPE-----LPT-SLEVLSVRNNQLTFLPE 177 (571)
T ss_dssp CCSCCCC----CCTTCCEEECCSSCCSCCCC-----CCT-TCCEEECCSSCCSCCCC
T ss_pred cCCCCCC----cCccccEEeCCCCccCcCCC-----cCC-CcCEEECCCCCCCCcch
Confidence 9999876 57899999999887553221 466 89999999988776554
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=2.8e-16 Score=157.56 Aligned_cols=179 Identities=17% Similarity=0.081 Sum_probs=94.1
Q ss_pred CCCCceEEEccCCCCcc--CCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCC-chh--hhHHhccCCCCC
Q 007339 353 HMNGLKVLNLSHTDIEV--LPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGT-WIE--EVLECMEMLENL 426 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~-~l~--~l~~~~~~l~~L 426 (607)
.+++|+.|++++|.+.. ++..+..+++|++|++++|.+....+ .+.++++|++|++++| .++ .++..+.++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 56666666666666552 45555666666666666665444444 5556666666666666 455 245555666666
Q ss_pred CeeeccCC-cCCcC-CCccccCCC-CCCEEEcccCc--chhhhhHHHhhcccccccEEEeeecC-ccc-cccccccccCC
Q 007339 427 SHLYLSSL-QLKKF-PTGILPRLR-NLYKLKLSFGN--EALRETVEEAASLSDGLDYFEGCFSK-LKD-FNRYVKSTDGR 499 (607)
Q Consensus 427 ~~L~l~~~-~l~~~-~~~~~~~l~-~L~~L~l~~~~--~~~~~~~~~l~~l~~~L~~L~l~~~~-~~~-~~~~~~~~~~~ 499 (607)
++|++++| .++.. .+..+..++ +|++|++++|. .........+..++ +|+.|+++.|. +.. ....+. ...
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~--~l~ 247 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQEFF--QLN 247 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGGGGG--GCT
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHHHHh--CCC
Confidence 66666666 55532 122345566 66666666653 22222234445566 66666666665 221 222222 224
Q ss_pred cceeEEEEeecchhhhhhcccccccccccceeeeeee
Q 007339 500 GSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFAC 536 (607)
Q Consensus 500 ~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 536 (607)
+|+.+.+..+..... .....+.++++|+.|+|++|
T Consensus 248 ~L~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 248 YLQHLSLSRCYDIIP--ETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCCEEECTTCTTCCG--GGGGGGGGCTTCCEEECTTS
T ss_pred CCCEeeCCCCCCCCH--HHHHHHhcCCCCCEEeccCc
Confidence 466655543321111 01123445566666666666
No 87
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.60 E-value=6e-15 Score=153.45 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=61.7
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
|.++++|++|++++|.++.+|..+ .+|++|++++|.+.. +|.+.++++|++|++++|.++.+|... ++|++|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~ 221 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIV 221 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEE
T ss_pred cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCcCCCCc---CcccEEE
Confidence 667777777777777776666432 366677777665554 445666666666666666665544321 3566666
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcc
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNE 460 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 460 (607)
+++|.++.+|. ++++++|+.|++++|..
T Consensus 222 l~~n~l~~lp~--~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 222 AGNNILEELPE--LQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CCSSCCSSCCC--CTTCTTCCEEECCSSCC
T ss_pred CcCCcCCcccc--cCCCCCCCEEECCCCcC
Confidence 66666655542 45666666666666543
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=4.5e-15 Score=141.91 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=133.7
Q ss_pred ccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hcc
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CME 421 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~ 421 (607)
.+|..+ .++++.|++++|.++.++. .+..+++|++|++++|.+....+ .+.++++|++|++++|.++.+|+ .+.
T Consensus 28 ~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 104 (251)
T 3m19_A 28 SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104 (251)
T ss_dssp SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence 456543 2689999999999997654 68999999999999999887777 68999999999999999998875 578
Q ss_pred CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcc
Q 007339 422 MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGS 501 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 501 (607)
.+++|++|++++|.++.+++..+.++++|+.|++++|..... ....+..++ +|+.|+++.|.+..++.
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~-~L~~L~L~~N~l~~~~~---------- 172 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-PAGAFDKLT-NLQTLSLSTNQLQSVPH---------- 172 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSCCSCCCT----------
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-CHHHcCcCc-CCCEEECCCCcCCccCH----------
Confidence 999999999999999999998889999999999999875432 224678889 99999999888754322
Q ss_pred eeEEEEeecchhhhhhcccccccccccceeeeeeeccCCC
Q 007339 502 KNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICER 541 (607)
Q Consensus 502 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 541 (607)
..+..+++|+.|+|++|.+...
T Consensus 173 ------------------~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 ------------------GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ------------------TTTTTCTTCCEEECCSCCBCTT
T ss_pred ------------------HHHhCCCCCCEEEeeCCceeCC
Confidence 2234457788888888887654
No 89
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.59 E-value=1.2e-14 Score=158.87 Aligned_cols=134 Identities=21% Similarity=0.186 Sum_probs=109.4
Q ss_pred CCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccCCCCCCeeec
Q 007339 355 NGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEMLENLSHLYL 431 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l 431 (607)
+++++|+|++|.|+.+|. .|.++++|++|+|++|.+....+ .|.++++|++|+|++|+++.+|+ .+.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 368889999998888764 68888999999999888776666 68888999999999998888876 4788899999999
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDF 489 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 489 (607)
++|+++.+++..|+++++|++|++++|.......+..+..++ +|++|+++.|.+..+
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSI 188 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-hhhhhcccCcccccc
Confidence 999888888877888999999999888765444445677788 889999888877653
No 90
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.59 E-value=3.4e-14 Score=143.08 Aligned_cols=271 Identities=13% Similarity=0.116 Sum_probs=156.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC------CHHHHHHHHHHHHccC--------------C
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL------DLFKLQTEIATALKQS--------------L 65 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~~l~~~--------------~ 65 (607)
+++.|+|++|+|||+|++++++... ++|+++.... +...+...+.+.+... .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 103 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--------GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKF 103 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--------EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--------cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecc
Confidence 6899999999999999999998741 7888875432 4556666666655320 0
Q ss_pred CCCcccccchHHHHHHHh----cCCcEEEEEecCCCcccc-----ccccc---CCCCCCCCcEEEEEeCchhhhhh----
Q 007339 66 PENEDKVRRPGRLLGMLK----AKEKFVLILDDMWEAFPL-----QEIGI---PEPSEENGCKLVITTRLYRVCRS---- 129 (607)
Q Consensus 66 ~~~~~~~~~~~~l~~~~~----~~~~~LlVlDdv~~~~~~-----~~l~~---~~~~~~~~~~IliTtR~~~~~~~---- 129 (607)
............+.+.+. ..++.+|||||++....+ ..+.. .+.....+.++|+|++...+...
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~ 183 (350)
T 2qen_A 104 LTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKI 183 (350)
T ss_dssp GTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCT
T ss_pred eeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhh
Confidence 000000122233333332 123899999999886431 11111 11111246789999886543111
Q ss_pred ------c--ccc-eeecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccHHHH-H
Q 007339 130 ------M--KCK-QVAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEIYEW-Q 199 (607)
Q Consensus 130 ------~--~~~-~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~~~~-~ 199 (607)
. ... .+++.+|+.+|+.+++.+.+....... .++.+..+++.++|+|+++..++..+....+...+ .
T Consensus 184 ~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~ 260 (350)
T 2qen_A 184 TDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMK 260 (350)
T ss_dssp TCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHH
Confidence 1 112 389999999999999988764332222 45788999999999999999988654321122211 1
Q ss_pred HHHHHHHhccccCCCCchhhhhhHHhhhcCCChhhHHHHHHHhhcCCCCCccChHHHHHHHHHhCCccccCCchhhHHHH
Q 007339 200 NALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCAQYPEDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRG 279 (607)
Q Consensus 200 ~~l~~l~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~l~la~f~~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~ 279 (607)
.......... ...+... .+ + + +..+..+..+|. .. ++...+....... . + .......
T Consensus 261 ~~~~~~~~~~------~~~l~~l---~~-~-~-~~~~~~l~~la~--g~--~~~~~l~~~~~~~-~-----~-~~~~~~~ 317 (350)
T 2qen_A 261 RTLEVAKGLI------MGELEEL---RR-R-S-PRYVDILRAIAL--GY--NRWSLIRDYLAVK-G-----T-KIPEPRL 317 (350)
T ss_dssp HHHHHHHHHH------HHHHHHH---HH-H-C-HHHHHHHHHHHT--TC--CSHHHHHHHHHHT-T-----C-CCCHHHH
T ss_pred HHHHHHHHHH------HHHHHHH---Hh-C-C-hhHHHHHHHHHh--CC--CCHHHHHHHHHHH-h-----C-CCCHHHH
Confidence 1111111000 0111111 11 2 5 678888888887 22 3434443322111 0 0 1122456
Q ss_pred HHHHHHHHHcccccccCCCCeEEe-cHHHHHHHH
Q 007339 280 HTILNRLVNWCLLESAEDDSCVKM-HDLIRDMAL 312 (607)
Q Consensus 280 ~~~l~~L~~~sll~~~~~~~~~~~-H~lv~~~~~ 312 (607)
..+++.|.+.+++...+ ..|.+ |++++++.+
T Consensus 318 ~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 318 YALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 67899999999998753 45765 788888764
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=7.1e-15 Score=143.47 Aligned_cols=179 Identities=17% Similarity=0.064 Sum_probs=118.5
Q ss_pred CCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccC
Q 007339 355 NGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSS 433 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~ 433 (607)
++++.|++++|.++.++ ..+..+++|++|++++|.+... +....+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 56777788877777553 4677777788888877765543 333677777888888777777777777777778888887
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchh
Q 007339 434 LQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWM 513 (607)
Q Consensus 434 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 513 (607)
|.++.+++..|.++++|+.|++++|..... ....+..++ +|+.|+++.|.+..++..... ....|+.+.+..+. ..
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~-l~ 185 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTP-KLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENS-LY 185 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCT-TCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSC-CC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCcc-Chhhccccc-CCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCc-CC
Confidence 777777777777777788888777754422 224456677 777788777777665543221 13446666554221 11
Q ss_pred hhhhcccccccccccceeeeeeeccCCC
Q 007339 514 YYMFIRDLITDLEVDKSVRLFACKICER 541 (607)
Q Consensus 514 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 541 (607)
..+..+..+++|+.|+|++|.+...
T Consensus 186 ---~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 186 ---TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp ---CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ---ccChhhcccccCCeEEeCCCCccCc
Confidence 2334455567788888888877543
No 92
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.57 E-value=1.4e-14 Score=150.72 Aligned_cols=222 Identities=15% Similarity=0.180 Sum_probs=94.4
Q ss_pred CCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCC
Q 007339 355 NGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSL 434 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~ 434 (607)
.+|++|++++|.++.+| .+..+++|++|++++|.+.. +|.+ ..+|++|++++|.++.+| .++.+++|++|++++|
T Consensus 173 ~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 173 PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL--PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNN 247 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC--cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCC
Confidence 35555555555555555 35555555555555554433 2211 135555555555555444 2455555555555555
Q ss_pred cCCcCCCccccCCCCCCEEEcccCcchhhhh--------------HHHhhcccccccEEEeeecCccccccccccccCCc
Q 007339 435 QLKKFPTGILPRLRNLYKLKLSFGNEALRET--------------VEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRG 500 (607)
Q Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 500 (607)
.++.+|. .+++|+.|++++|....... +..+..++++|+.|+++.|.+..++.. ...
T Consensus 248 ~l~~l~~----~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~-----~~~ 318 (454)
T 1jl5_A 248 LLKTLPD----LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL-----PPS 318 (454)
T ss_dssp CCSSCCS----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCC-----CTT
T ss_pred cCCcccc----cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCC-----cCc
Confidence 5554432 12444444444443221000 000111111555555555554433211 123
Q ss_pred ceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcccccCccccccccc----
Q 007339 501 SKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVASLNDVLPREQGLV---- 576 (607)
Q Consensus 501 L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~---- 576 (607)
|+.+++..+. ... .+. .+++|+.|++++|.+...+. .+++|+.|++++|. ++.+|.++..+..+.
T Consensus 319 L~~L~Ls~N~-l~~---lp~---~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~-l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 319 LEELNVSNNK-LIE---LPA---LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP-LREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp CCEEECCSSC-CSC---CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCCCCCTTCCEEECCC-
T ss_pred CCEEECCCCc-ccc---ccc---cCCcCCEEECCCCccccccc---hhhhccEEECCCCC-CCcCCCChHHHHhhhhccc
Confidence 5555554221 110 111 24788899999888876544 57889999999885 444433332221110
Q ss_pred --cccccccccceEEEecccchh--hhhh
Q 007339 577 --NIGKFSHDLKVLRFHYCHNLK--NLFS 601 (607)
Q Consensus 577 --~~~~~~~~L~~L~l~~c~~l~--~lp~ 601 (607)
.+...+++|++|++++|+-.+ .+|+
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp -----------------------------
T ss_pred ccccccccCcCCEEECCCCcCCccccchh
Confidence 000112789999999877554 5654
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=1.3e-15 Score=163.15 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=120.9
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.+....+ +.++++|+.|+|++|.++.+| .+..+++|+.|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 345677777777777777766 46777778888887776655443 777777888888877777655 577777788888
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
|++|.+..++. +..+++|+.|+|++|..... ..+..++ +|+.|+|+.|.+...+.
T Consensus 116 Ls~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l---~~l~~l~-~L~~L~Ls~N~l~~~~~------------------- 170 (605)
T 1m9s_A 116 LEHNGISDING--LVHLPQLESLYLGNNKITDI---TVLSRLT-KLDTLSLEDNQISDIVP------------------- 170 (605)
T ss_dssp CTTSCCCCCGG--GGGCTTCSEEECCSSCCCCC---GGGGSCT-TCSEEECCSSCCCCCGG-------------------
T ss_pred ecCCCCCCCcc--ccCCCccCEEECCCCccCCc---hhhcccC-CCCEEECcCCcCCCchh-------------------
Confidence 87777777643 56777777777777765433 4566777 77777777666533211
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeec
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (607)
+..+++|+.|+|++|.+.+. +.+..+++|+.|+|++|+
T Consensus 171 -----------l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 -----------LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -----------GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEE
T ss_pred -----------hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCc
Confidence 34568899999999988765 346677889999999886
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=4.6e-15 Score=146.68 Aligned_cols=200 Identities=14% Similarity=0.031 Sum_probs=149.9
Q ss_pred CCCCceEEEccCCCCc-cCCccc--cCCccCcEeecccccCCCCCC-----cccCCCCCCEEeccCCchhhhH-HhccCC
Q 007339 353 HMNGLKVLNLSHTDIE-VLPSSI--SDLTNLRSLLLRWCGRLKRVP-----SLAKLLALQYLDLEGTWIEEVL-ECMEML 423 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~-~l~~~~--~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~l~~l~-~~~~~l 423 (607)
.+++|+.|++++|.+. ..|..+ ..+++|++|++++|.+....+ .+..+++|++|++++|.+..++ ..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 4567999999999988 556666 889999999999998876544 2457899999999999998776 478899
Q ss_pred CCCCeeeccCCcCCc---CCCc-cccCCCCCCEEEcccCcchhhhh-HH-HhhcccccccEEEeeecCcccc-ccccccc
Q 007339 424 ENLSHLYLSSLQLKK---FPTG-ILPRLRNLYKLKLSFGNEALRET-VE-EAASLSDGLDYFEGCFSKLKDF-NRYVKST 496 (607)
Q Consensus 424 ~~L~~L~l~~~~l~~---~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~-~l~~l~~~L~~L~l~~~~~~~~-~~~~~~~ 496 (607)
++|++|++++|.+.+ ++.. .++++++|++|++++|....... .. .+..++ +|++|+++.|.+... +..+...
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV-QPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC-CCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC-CCCEEECCCCCCCccchhhHHhc
Confidence 999999999998764 3322 24789999999999987643222 12 246788 999999999998875 4444332
Q ss_pred c-CCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeec
Q 007339 497 D-GRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVD 560 (607)
Q Consensus 497 ~-~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~ 560 (607)
. .++|+.+.+..+. .. . .+..+ .++|+.|+|++|.+.+.+. ...+++|+.|++++|+
T Consensus 248 ~~~~~L~~L~Ls~N~-l~--~-lp~~~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 248 MWSSALNSLNLSFAG-LE--Q-VPKGL--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCTTCCCEECCSSC-CC--S-CCSCC--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCcCcCCEEECCCCC-CC--c-hhhhh--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 2 2458888876332 21 1 23333 2799999999999987533 5677899999999995
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=6.8e-14 Score=141.29 Aligned_cols=273 Identities=12% Similarity=0.101 Sum_probs=155.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-----CCHHHHHHHHHHHHcc-------------CC--
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-----LDLFKLQTEIATALKQ-------------SL-- 65 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~-------------~~-- 65 (607)
+++.|+|++|+|||+|++++++... . ..+|+++... .+.......+.+.+.. ..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 104 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---L---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQG 104 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---C---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---C---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccce
Confidence 6899999999999999999998864 1 2688987643 3445555555554421 00
Q ss_pred ---CC-Ccc------cccchHHHHHHHhc-C-CcEEEEEecCCCccc-----ccccccCCCCCCCCcEEEEEeCchhhhh
Q 007339 66 ---PE-NED------KVRRPGRLLGMLKA-K-EKFVLILDDMWEAFP-----LQEIGIPEPSEENGCKLVITTRLYRVCR 128 (607)
Q Consensus 66 ---~~-~~~------~~~~~~~l~~~~~~-~-~~~LlVlDdv~~~~~-----~~~l~~~~~~~~~~~~IliTtR~~~~~~ 128 (607)
.. ..+ .......+.+.+.. . ++.+|||||++.... +..+...+.....+.++|+|++......
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~ 184 (357)
T 2fna_A 105 IVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLY 184 (357)
T ss_dssp EEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHH
T ss_pred EEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHH
Confidence 00 000 12234455555543 1 489999999987532 1111111111123678999999765321
Q ss_pred h----------c--cc-ceeecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhhcCCccH
Q 007339 129 S----------M--KC-KQVAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASMSGEEEI 195 (607)
Q Consensus 129 ~----------~--~~-~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l~~~~~~ 195 (607)
. . .. ..+++.+|+.+|+.+++.+.++...... . + ...+++.++|+|+++..++..+....+.
T Consensus 185 ~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~-~-~~~i~~~t~G~P~~l~~~~~~~~~~~~~ 259 (357)
T 2fna_A 185 DYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF---K-D-YEVVYEKIGGIPGWLTYFGFIYLDNKNL 259 (357)
T ss_dssp HHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC---C-C-HHHHHHHHCSCHHHHHHHHHHHHHHCCH
T ss_pred HHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC---C-c-HHHHHHHhCCCHHHHHHHHHHHccccch
Confidence 1 1 11 2389999999999999988653211111 1 1 1789999999999999988765432222
Q ss_pred HHHHH-HHHHHHhccccCCCCchhhhhhHHhhhcCCChhhHHHHHHHhhcCCCCCccChHHHHHHHH-HhCCccccCCch
Q 007339 196 YEWQN-ALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCAQYPEDFAIPKDKLIDYWI-AEGFIDEVKDVP 273 (607)
Q Consensus 196 ~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~l~la~f~~~~~i~~~~l~~~w~-~~~~~~~~~~~~ 273 (607)
..|.. ..+...... ...+...+.. -..++ +..+..+..+|+ .. +...+..... ..+ .+
T Consensus 260 ~~~~~~~~~~~~~~~------~~~l~~~~~~-~~~l~-~~~~~~l~~la~--g~---~~~~l~~~~~~~~g-------~~ 319 (357)
T 2fna_A 260 DFAINQTLEYAKKLI------LKEFENFLHG-REIAR-KRYLNIMRTLSK--CG---KWSDVKRALELEEG-------IE 319 (357)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHTT-CGGGH-HHHHHHHHHHTT--CB---CHHHHHHHHHHHHC-------SC
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHhhc-ccccc-HHHHHHHHHHHc--CC---CHHHHHHHHHHhcC-------CC
Confidence 22211 111110000 0111111100 01566 778888888887 21 3344332110 011 00
Q ss_pred hhHHHHHHHHHHHHHcccccccCCCCeEE-ecHHHHHHH
Q 007339 274 AKYDRGHTILNRLVNWCLLESAEDDSCVK-MHDLIRDMA 311 (607)
Q Consensus 274 ~~~~~~~~~l~~L~~~sll~~~~~~~~~~-~H~lv~~~~ 311 (607)
.........++.|.+.+++...+ ..|+ .|++++++.
T Consensus 320 ~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 320 ISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp CCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred CCHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 12245667899999999998754 4577 478988864
No 96
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=5.5e-15 Score=158.41 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=129.3
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+.. ++.+..+++|+.|+|++|.+..++ .+..+++|+.|+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 137 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLY 137 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEE
T ss_pred HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC-ChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEE
Confidence 7889999999999999998876 8999999999999997654 568999999999999999998874 588999999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
|++|.++.++ .+..+++|+.|+|++|....... +..++ +|+.|+|+.|.+..++
T Consensus 138 Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~-~L~~L~Ls~N~i~~l~-------------------- 191 (605)
T 1m9s_A 138 LGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT-KLQNLYLSKNHISDLR-------------------- 191 (605)
T ss_dssp CCSSCCCCCG--GGGSCTTCSEEECCSSCCCCCGG---GTTCT-TCCEEECCSSCCCBCG--------------------
T ss_pred CCCCccCCch--hhcccCCCCEEECcCCcCCCchh---hccCC-CCCEEECcCCCCCCCh--------------------
Confidence 9999999883 46899999999999987654433 88899 9999999988775421
Q ss_pred chhhhhhcccccccccccceeeeeeeccCCCC
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKICERE 542 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 542 (607)
.+..+++|+.|+|++|.+...+
T Consensus 192 ----------~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 192 ----------ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ----------GGTTCTTCSEEECCSEEEECCC
T ss_pred ----------HHccCCCCCEEEccCCcCcCCc
Confidence 1344588999999999887654
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.56 E-value=1.5e-15 Score=153.58 Aligned_cols=246 Identities=11% Similarity=0.056 Sum_probs=165.4
Q ss_pred cccccchhhhcCCCCceEEEccCCCCccCC-----ccccCCc-cCcEeecccccCCCCCC-cccCC-----CCCCEEecc
Q 007339 342 LERRIPECFFVHMNGLKVLNLSHTDIEVLP-----SSISDLT-NLRSLLLRWCGRLKRVP-SLAKL-----LALQYLDLE 409 (607)
Q Consensus 342 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-----~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~l-----~~L~~L~l~ 409 (607)
+.+.+|. ++...++|+.|++++|.++..+ ..+..++ +|++|++++|.+....+ .+..+ ++|++|+++
T Consensus 10 ~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 10 GSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp TCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC
T ss_pred chHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc
Confidence 3444444 3555667999999999998766 5677888 89999999998877655 55554 999999999
Q ss_pred CCchhhhH-H----hccCC-CCCCeeeccCCcCCcCCCccc----cC-CCCCCEEEcccCcchhhhh---HHHhhccccc
Q 007339 410 GTWIEEVL-E----CMEML-ENLSHLYLSSLQLKKFPTGIL----PR-LRNLYKLKLSFGNEALRET---VEEAASLSDG 475 (607)
Q Consensus 410 ~~~l~~l~-~----~~~~l-~~L~~L~l~~~~l~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~---~~~l~~l~~~ 475 (607)
+|.++..+ . .+..+ ++|++|++++|.++..+...+ .. .++|++|++++|....... ...+..++.+
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 168 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTT
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcc
Confidence 99988443 3 25555 899999999999988876543 33 4699999999987653221 2344444338
Q ss_pred ccEEEeeecCcccccc-cccc--ccC-CcceeEEEEeecchhh--hhhccccccc-ccccceeeeeeeccCCCCCc----
Q 007339 476 LDYFEGCFSKLKDFNR-YVKS--TDG-RGSKNYCLVLSESWMY--YMFIRDLITD-LEVDKSVRLFACKICEREEP---- 544 (607)
Q Consensus 476 L~~L~l~~~~~~~~~~-~~~~--~~~-~~L~~l~l~~~~~~~~--~~~~~~~~~~-l~~L~~L~L~~~~~~~~~~~---- 544 (607)
|++|+++.|.+..... .+.. ... ..|+.+++..+. ... ....+..+.. .++|+.|+|++|.+...+..
T Consensus 169 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred ccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 9999999998865332 1111 112 358887776432 111 0112233333 35899999999998865431
Q ss_pred -ccCCcccceeeeeeecCcccccC--ccccccccccccccccccceEEEeccc
Q 007339 545 -IVLPEDVQYLEMIRVDDVASLND--VLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 545 -~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
...+++|+.|++++|. +..+.. +..+...+ ..+++|++|++++++
T Consensus 248 ~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~----~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAF----PNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTS----TTCCEEEEECTTSCB
T ss_pred HHhcCCCccEEEeccCC-ccccCHHHHHHHHHHh----ccCCceEEEecCCCc
Confidence 4667889999999995 111110 00111112 567889999999887
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=6e-15 Score=135.34 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=118.9
Q ss_pred cCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhh-hHHhccCCCCCCeee
Q 007339 352 VHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEE-VLECMEMLENLSHLY 430 (607)
Q Consensus 352 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L~ 430 (607)
..+++|+.|++++|.++.+| .+..+++|++|++++|. ...++.+..+++|++|++++|.++. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 46788999999999999888 68899999999999884 3455578889999999999998884 567788999999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeec
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSE 510 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 510 (607)
+++|.++...+..++++++|+.|++++|...... ..+..++ +|+.|+++.|.+..++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~--~~l~~l~-~L~~L~l~~n~i~~~~-------------------- 175 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTLP-ELKSLNIQFDGVHDYR-------------------- 175 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC--GGGGGCS-SCCEEECTTBCCCCCT--------------------
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc--HhhcCCC-CCCEEECCCCCCcChH--------------------
Confidence 9999988755566789999999999988622222 2577888 9999999888764322
Q ss_pred chhhhhhcccccccccccceeeeeeeccC
Q 007339 511 SWMYYMFIRDLITDLEVDKSVRLFACKIC 539 (607)
Q Consensus 511 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 539 (607)
.+..+++|+.|++++|.+.
T Consensus 176 ----------~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 176 ----------GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ----------TGGGCSSCCEEEECBC---
T ss_pred ----------HhccCCCCCEEEeeCcccC
Confidence 1234577888888888764
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=2.3e-14 Score=133.77 Aligned_cols=130 Identities=21% Similarity=0.218 Sum_probs=74.4
Q ss_pred CCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeeec
Q 007339 355 NGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLYL 431 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l 431 (607)
++++.|++++|.++.++. .|..+++|++|++++|.+....| .+.++++|++|+|++|.++.+|+. +..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 456666666666665543 45556666666666665555444 566666666666666666655543 455666666666
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKL 486 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 486 (607)
++|.++.+++..|..+++|+.|+|++|...... ...+..++ +|+.|+++.|.+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~-~L~~L~L~~N~~ 164 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLR-AIQTMHLAQNPF 164 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCT-TCCEEECCSSCE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCC-CCCEEEeCCCCc
Confidence 666666665555566666666666655433221 13345555 566666655544
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=2e-14 Score=144.63 Aligned_cols=225 Identities=15% Similarity=0.026 Sum_probs=160.2
Q ss_pred eEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchh-hhHH-hccCCCCCCe-eeccC
Q 007339 358 KVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIE-EVLE-CMEMLENLSH-LYLSS 433 (607)
Q Consensus 358 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~-~~~~l~~L~~-L~l~~ 433 (607)
++++-++++++.+|..+. +++++|+|++|.+....+ .|.++++|++|+|++|.+. .+|. .+.++++|.. +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 567888999999997663 689999999998876655 7899999999999999875 4664 4788988876 55667
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeee-cCccccccccccccCCcceeEEEEeecch
Q 007339 434 LQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCF-SKLKDFNRYVKSTDGRGSKNYCLVLSESW 512 (607)
Q Consensus 434 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 512 (607)
|+++.+++..|..+++|+.|++++|....... ..+.... ++..+++.. +.+..++..........++.+.+..+ .
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-~~~~~~~-~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N--~ 165 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSL-QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN--G 165 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-CTTCCBS-SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS--C
T ss_pred CcccccCchhhhhccccccccccccccccCCc-hhhcccc-hhhhhhhccccccccccccchhhcchhhhhhccccc--c
Confidence 88999999999999999999999987543322 2334455 677888865 34544443322221223555555421 1
Q ss_pred hhhhhcccccccccccceeeeee-eccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccccccccceEEE
Q 007339 513 MYYMFIRDLITDLEVDKSVRLFA-CKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRF 590 (607)
Q Consensus 513 ~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l 590 (607)
. .. .+.......+|+.|.+.+ +.+...+.. +..+++|+.|++++|. ++.+|. ..+.+|+.|.+
T Consensus 166 i-~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~------------~~~~~L~~L~~ 230 (350)
T 4ay9_X 166 I-QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS------------YGLENLKKLRA 230 (350)
T ss_dssp C-CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS------------SSCTTCCEEEC
T ss_pred c-cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh------------hhhccchHhhh
Confidence 1 11 222333456799999986 455554443 6788999999999984 666652 34688999999
Q ss_pred ecccchhhhhhcc
Q 007339 591 HYCHNLKNLFSLR 603 (607)
Q Consensus 591 ~~c~~l~~lp~~~ 603 (607)
.+|.+++.+|++.
T Consensus 231 l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 231 RSTYNLKKLPTLE 243 (350)
T ss_dssp TTCTTCCCCCCTT
T ss_pred ccCCCcCcCCCch
Confidence 9999999998754
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=2e-14 Score=133.13 Aligned_cols=124 Identities=20% Similarity=0.195 Sum_probs=61.5
Q ss_pred EEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeeeccCCcC
Q 007339 359 VLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLYLSSLQL 436 (607)
Q Consensus 359 ~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~l 436 (607)
.++.+++.++.+|..+ .++|++|++++|.+....+ .+.++++|++|++++|+++.+|.. +..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 4444455555554332 2355555555555443333 345555555555555555544432 34555555555555555
Q ss_pred CcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCc
Q 007339 437 KKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKL 486 (607)
Q Consensus 437 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 486 (607)
+.+++..+.++++|+.|++++|..... ....+..++ +|+.|+++.|.+
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~-~L~~L~l~~N~l 136 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSL-PDGVFDKLT-QLKDLRLYQNQL 136 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSCC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCccc-CHhHhccCC-cCCEEECCCCcc
Confidence 555555445555555555555443211 112244455 555555555544
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.52 E-value=3.6e-14 Score=126.55 Aligned_cols=137 Identities=25% Similarity=0.223 Sum_probs=119.1
Q ss_pred CCCCceEEEccCCCCc--cCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhh-hHHhccCCCCCCee
Q 007339 353 HMNGLKVLNLSHTDIE--VLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEE-VLECMEMLENLSHL 429 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L 429 (607)
..++|+.|++++|.++ .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.++. +|..++++++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4588999999999998 8998889999999999999987665 789999999999999999997 77777889999999
Q ss_pred eccCCcCCcCCC-ccccCCCCCCEEEcccCcchhhhh--HHHhhcccccccEEEeeecCcccccc
Q 007339 430 YLSSLQLKKFPT-GILPRLRNLYKLKLSFGNEALRET--VEEAASLSDGLDYFEGCFSKLKDFNR 491 (607)
Q Consensus 430 ~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~~L~~L~l~~~~~~~~~~ 491 (607)
++++|.++.++. ..+..+++|+.|++++|....... ...+..++ +|+.|+++.|.....+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-QLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-SCCEETTEETTSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-cCcEecCCCCChhhccc
Confidence 999999999864 557899999999999987654433 24688899 99999999998876554
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=2.4e-14 Score=133.64 Aligned_cols=145 Identities=17% Similarity=0.223 Sum_probs=103.1
Q ss_pred eEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhh-HHhccCCCCCCeeeccCCc
Q 007339 358 KVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEV-LECMEMLENLSHLYLSSLQ 435 (607)
Q Consensus 358 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~~ 435 (607)
+.++.+++.++.+|..+. ++|+.|++++|.+....+ .+.++++|++|++++|.++.+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567777777877776554 678888888887766655 677888888888888887766 5567788888888888888
Q ss_pred CCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEE
Q 007339 436 LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLV 507 (607)
Q Consensus 436 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 507 (607)
++.+|+..|..+++|+.|+|++|..... ....+..++ +|+.|+++.|.+..++.... .....|+.+.+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~ 160 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCL-RVDAFQDLH-NLNLLSLYDNKLQTIAKGTF-SPLRAIQTMHLA 160 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT-TCCEEECCSSCCSCCCTTTT-TTCTTCCEEECC
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEe-CHHHcCCCC-CCCEEECCCCcCCEECHHHH-hCCCCCCEEEeC
Confidence 8888877777888888888887764432 234567777 88888888887776554211 113446665554
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=5.3e-14 Score=132.23 Aligned_cols=124 Identities=21% Similarity=0.213 Sum_probs=62.6
Q ss_pred eEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeeeccCCc
Q 007339 358 KVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLYLSSLQ 435 (607)
Q Consensus 358 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~~ 435 (607)
+.++.+++.+..+|..+. ++|++|++++|.+....| .+.++++|++|++++|.+..+|.. +..+++|+.|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 345555555555554332 455555555555544444 455555555555555555554432 3455555555555555
Q ss_pred CCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCc
Q 007339 436 LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKL 486 (607)
Q Consensus 436 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 486 (607)
++.+++..+..+++|+.|++++|.... .+..+..++ +|+.|+++.|.+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~-~L~~L~L~~N~l 147 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLT-HLTHLALDQNQL 147 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCT-TCSEEECCSSCC
T ss_pred CCccChhHhCcchhhCeEeccCCcccc--cCcccccCC-CCCEEECCCCcC
Confidence 555555544555555555555554331 123344455 555555555544
No 105
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.51 E-value=1.6e-13 Score=150.01 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=117.6
Q ss_pred hhcccccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH
Q 007339 340 ENLERRIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL 417 (607)
Q Consensus 340 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~ 417 (607)
.|....+|+..|.++++|++|++++|.|+.+|. .|.++++|++|+|++|.+....+ .|.++.+|++|++++|+++.+|
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~ 140 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence 344455787779999999999999999998865 68999999999999998777666 7899999999999999999888
Q ss_pred H-hccCCCCCCeeeccCCcCCcCC-CccccCCCCCCEEEcccCcchhh--hhHHHhhcccccccEEEeeecCccc
Q 007339 418 E-CMEMLENLSHLYLSSLQLKKFP-TGILPRLRNLYKLKLSFGNEALR--ETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 418 ~-~~~~l~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
+ .++++++|++|++++|.++.++ +..++.+++|++|++++|..... ..+..+..++.....++++.|.+..
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 6 4899999999999999998754 45568999999999999865432 2223333333123456666555544
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.51 E-value=2.1e-14 Score=145.00 Aligned_cols=128 Identities=18% Similarity=0.147 Sum_probs=71.2
Q ss_pred eEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-ccc-CCCCCCEEeccCCchhhhHH-hccCCCCCCeeeccCC
Q 007339 358 KVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLA-KLLALQYLDLEGTWIEEVLE-CMEMLENLSHLYLSSL 434 (607)
Q Consensus 358 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~-~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~ 434 (607)
++++++++.++.+|..+. ..++.|+|++|.+....+ .+. ++.+|++|+|++|+++.+++ .+.++++|++|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 455666666665554433 235666666665554444 344 56666666666666665543 3556666666666666
Q ss_pred cCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccc
Q 007339 435 QLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDF 489 (607)
Q Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 489 (607)
.++.+++..|.++++|+.|+|++|..... ....+..++ +|+.|+++.|.+..+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~-~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVV-DRNAFEDMA-QLQKLYLSQNQISRF 151 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCT-TCCEEECCSSCCCSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEE-CHHHhCCcc-cCCEEECCCCcCCee
Confidence 66666555556666666666665543322 123455555 666666666655443
No 107
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=6.2e-16 Score=162.21 Aligned_cols=234 Identities=15% Similarity=0.143 Sum_probs=121.0
Q ss_pred hcCCCCceEEEccCCCCccC-C-ccccCCc----cCcEeecccccCCC----CCC-cccCCCCCCEEeccCCchhhh-HH
Q 007339 351 FVHMNGLKVLNLSHTDIEVL-P-SSISDLT----NLRSLLLRWCGRLK----RVP-SLAKLLALQYLDLEGTWIEEV-LE 418 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l-~-~~~~~l~----~L~~L~l~~~~~~~----~~~-~~~~l~~L~~L~l~~~~l~~l-~~ 418 (607)
+..+++|++|++++|.+... + .....++ +|++|++++|.+.. .++ .+.++++|++|++++|.+... +.
T Consensus 52 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 52 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp HHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred HHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 55666777777777666521 1 1112233 57777777766553 223 566667777777777766522 11
Q ss_pred h-----ccCCCCCCeeeccCCcCCcCC----CccccCCCCCCEEEcccCcchhhhhHHHhh-----cccccccEEEeeec
Q 007339 419 C-----MEMLENLSHLYLSSLQLKKFP----TGILPRLRNLYKLKLSFGNEALRETVEEAA-----SLSDGLDYFEGCFS 484 (607)
Q Consensus 419 ~-----~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-----~l~~~L~~L~l~~~ 484 (607)
. ....++|++|++++|.++... +..+..+++|++|++++|.... ..+..+. ..+ +|+.|+++.|
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~-~L~~L~L~~n 209 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE-AGVRVLCQGLKDSPC-QLEALKLESC 209 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH-HHHHHHHHHHHHSCC-CCCEEECTTS
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch-HHHHHHHHHHhcCCC-CceEEEccCC
Confidence 1 122456777777777666533 2234556777777777665332 2222222 245 6777777777
Q ss_pred Ccccc-----ccccccccCCcceeEEEEeecchhhh---hhcccccccccccceeeeeeeccCCCC-----CcccCCccc
Q 007339 485 KLKDF-----NRYVKSTDGRGSKNYCLVLSESWMYY---MFIRDLITDLEVDKSVRLFACKICERE-----EPIVLPEDV 551 (607)
Q Consensus 485 ~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~~~-----~~~~~~~~L 551 (607)
.+... +..+. .+..|+.+++..+. .... ...+..+..+++|++|+|++|.+...+ ..+..+++|
T Consensus 210 ~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 210 GVTSDNCRDLCGIVA--SKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286 (461)
T ss_dssp CCBTTHHHHHHHHHH--HCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHH--hCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCc
Confidence 66542 22222 23446666665322 1110 011112234577777777777665421 113346677
Q ss_pred ceeeeeeecCcccccCccccccccccccccccccceEEEeccc
Q 007339 552 QYLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 552 ~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
++|++++|. +++.. ...+... +....++|++|++++|.
T Consensus 287 ~~L~Ls~n~-i~~~~-~~~l~~~---l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 287 KELSLAGNE-LGDEG-ARLLCET---LLEPGCQLESLWVKSCS 324 (461)
T ss_dssp CEEECTTCC-CHHHH-HHHHHHH---HTSTTCCCCEEECTTSC
T ss_pred ceEECCCCC-CchHH-HHHHHHH---hccCCccceeeEcCCCC
Confidence 777777774 22211 0011000 01223688888888886
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=3.7e-14 Score=136.26 Aligned_cols=129 Identities=21% Similarity=0.231 Sum_probs=100.0
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeee
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLY 430 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~ 430 (607)
+..+++|+.|++++|.++.++ .+..+++|++|++++|.+....+ +.++++|++|++++|.++.+|.... ++|+.|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~ 112 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF 112 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence 567888888888888888877 67888888888888887665544 8888888888888888887765333 8888888
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcccc
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDF 489 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~ 489 (607)
+++|.++.++. +.++++|+.|++++|..... ..+..++ +|+.|+++.|.+...
T Consensus 113 L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~---~~l~~l~-~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 113 LDNNELRDTDS--LIHLKNLEILSIRNNKLKSI---VMLGFLS-KLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSBSGG--GTTCTTCCEEECTTSCCCBC---GGGGGCT-TCCEEECTTSCCCBC
T ss_pred ccCCccCCChh--hcCcccccEEECCCCcCCCC---hHHccCC-CCCEEECCCCcCcch
Confidence 88888888753 57888888888888765443 2577788 888888888776544
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1.4e-14 Score=139.30 Aligned_cols=171 Identities=17% Similarity=0.082 Sum_probs=131.8
Q ss_pred CCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeecc
Q 007339 353 HMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLS 432 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~ 432 (607)
.+.++..++++.+.++.++ .+..+++|++|++++|.+. .++.+..+++|++|++++|.++.+++ +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 4566777788999998877 6788999999999999765 45688999999999999999998887 9999999999999
Q ss_pred CCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecch
Q 007339 433 SLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESW 512 (607)
Q Consensus 433 ~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 512 (607)
+|.++.++.. .. ++|+.|++++|..... ..+..++ +|+.|+++.|.+..++. ...+..|+.+.+..+. .
T Consensus 94 ~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~---~~l~~l~-~L~~L~Ls~N~i~~~~~---l~~l~~L~~L~L~~N~-i 162 (263)
T 1xeu_A 94 RNRLKNLNGI--PS-ACLSRLFLDNNELRDT---DSLIHLK-NLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNE-I 162 (263)
T ss_dssp SSCCSCCTTC--CC-SSCCEEECCSSCCSBS---GGGTTCT-TCCEEECTTSCCCBCGG---GGGCTTCCEEECTTSC-C
T ss_pred CCccCCcCcc--cc-CcccEEEccCCccCCC---hhhcCcc-cccEEECCCCcCCCChH---HccCCCCCEEECCCCc-C
Confidence 9999998763 34 9999999999876553 3588899 99999999999877642 1223446665554221 1
Q ss_pred hhhhhcccccccccccceeeeeeeccCCC
Q 007339 513 MYYMFIRDLITDLEVDKSVRLFACKICER 541 (607)
Q Consensus 513 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~ 541 (607)
.. . ..+..+++|+.|++++|.+...
T Consensus 163 ~~-~---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TN-T---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CB-C---TTSTTCCCCCEEEEEEEEEECC
T ss_pred cc-h---HHhccCCCCCEEeCCCCcccCC
Confidence 11 1 3455667777777777776644
No 110
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=1.3e-13 Score=142.09 Aligned_cols=274 Identities=13% Similarity=0.120 Sum_probs=160.1
Q ss_pred CceEEEE--EcCCCChHHHHHHHHHhhcccCC--CCCC-eEEEEEeCCCCCHHHHHHHHHHHHccCCCCCc-ccccchHH
Q 007339 4 KVSKIGV--WGMGGIGKTTIMSHINNKLQEKP--NKFN-DVIWVTVSQPLDLFKLQTEIATALKQSLPENE-DKVRRPGR 77 (607)
Q Consensus 4 ~~~~i~I--~G~~G~GKTtLa~~~~~~~~~~~--~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~ 77 (607)
..+.+.| +|++|+|||+||+++++...... ..++ .++|+++....+...++..++..++.+..... +.......
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 128 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 4567778 99999999999999998864310 1122 37888887777888999999999976533211 12222334
Q ss_pred HHHHHh-cCCcEEEEEecCCCccc--------ccccccCCCCC---C--CCcEEEEEeCchhhhhhc---------ccce
Q 007339 78 LLGMLK-AKEKFVLILDDMWEAFP--------LQEIGIPEPSE---E--NGCKLVITTRLYRVCRSM---------KCKQ 134 (607)
Q Consensus 78 l~~~~~-~~~~~LlVlDdv~~~~~--------~~~l~~~~~~~---~--~~~~IliTtR~~~~~~~~---------~~~~ 134 (607)
+.+.+. .+++++|||||++.... +..+...+... + ....+|+||+...+.... ....
T Consensus 129 l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~ 208 (412)
T 1w5s_A 129 LVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGF 208 (412)
T ss_dssp HHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSE
T ss_pred HHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCC
Confidence 444442 36799999999987532 11111111111 2 345588788755432111 1112
Q ss_pred -eecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcC------CchHHHHHHHHhh------cCC--ccHHHHH
Q 007339 135 -VAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECG------CLPLAIVTVAASM------SGE--EEIYEWQ 199 (607)
Q Consensus 135 -~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~PLal~~~a~~l------~~~--~~~~~~~ 199 (607)
+.+++++.+++.++|..++...... ....++.++.+++.++ |.|..+..+.... .+. -+...+.
T Consensus 209 ~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~ 287 (412)
T 1w5s_A 209 KLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVR 287 (412)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 8999999999999998765321110 1125678899999999 9997554443221 111 1122233
Q ss_pred HHHHHHHhccccCCCCchhhhhhHHhhhcCCChhhHHHHHHHhhcCC--CCCccChHHHHHHH--HH-hCCccccCCchh
Q 007339 200 NALNELRGRLRSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCAQYP--EDFAIPKDKLIDYW--IA-EGFIDEVKDVPA 274 (607)
Q Consensus 200 ~~l~~l~~~~~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~l~la~f~--~~~~i~~~~l~~~w--~~-~~~~~~~~~~~~ 274 (607)
..+..... ...+...+..|+ +..+.++..+|.+. ....++...+...+ ++ ... . ..+.
T Consensus 288 ~~~~~~~~------------~~~~~~~l~~l~-~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~ 350 (412)
T 1w5s_A 288 KAVSENEA------------ASIQTHELEALS-IHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMY-N---VKPR 350 (412)
T ss_dssp HHHHHC------------------CCSSSSSC-HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHS-C---CCCC
T ss_pred HHHHHHhc------------cchHHHHHHcCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhc-C---CCCC
Confidence 22221100 233445678888 78888888888653 23345555544333 22 111 0 0112
Q ss_pred hHHHHHHHHHHHHHccccccc
Q 007339 275 KYDRGHTILNRLVNWCLLESA 295 (607)
Q Consensus 275 ~~~~~~~~l~~L~~~sll~~~ 295 (607)
.......+++.|.+.+++...
T Consensus 351 ~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 351 GYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEee
Confidence 234566789999999999875
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=3e-15 Score=152.98 Aligned_cols=236 Identities=12% Similarity=0.050 Sum_probs=158.4
Q ss_pred CceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-----cccCCCCCCEEeccCCchh----hhHHhc------
Q 007339 356 GLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-----SLAKLLALQYLDLEGTWIE----EVLECM------ 420 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~l~----~l~~~~------ 420 (607)
.|+...++...+..++..+..+++|++|++++|.+....+ .+.++++|++|++++|.+. .+|..+
T Consensus 10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 3333344444455677788889999999999998776433 4778999999999997443 345444
Q ss_pred -cCCCCCCeeeccCCcCCcC----CCccccCCCCCCEEEcccCcchhhhh---HHHhhcc---------cccccEEEeee
Q 007339 421 -EMLENLSHLYLSSLQLKKF----PTGILPRLRNLYKLKLSFGNEALRET---VEEAASL---------SDGLDYFEGCF 483 (607)
Q Consensus 421 -~~l~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l---------~~~L~~L~l~~ 483 (607)
..+++|++|+|++|.++.. .+..+.++++|++|+|++|....... ...+..+ + +|++|+++.
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~-~L~~L~L~~ 168 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-PLRSIICGR 168 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-CCCEEECCS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC-CCcEEECCC
Confidence 7899999999999998872 23346899999999999987643221 1334445 8 999999999
Q ss_pred cCcc--ccccccc-cccCCcceeEEEEeecchhhh---hhcccccccccccceeeeeeeccCC-----CCCcccCCcccc
Q 007339 484 SKLK--DFNRYVK-STDGRGSKNYCLVLSESWMYY---MFIRDLITDLEVDKSVRLFACKICE-----REEPIVLPEDVQ 552 (607)
Q Consensus 484 ~~~~--~~~~~~~-~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~l~~L~~L~L~~~~~~~-----~~~~~~~~~~L~ 552 (607)
|.+. ..+.+.. ...+..|+.+.+..+. .... ...+..+.++++|+.|+|++|.+.. .+..+..+++|+
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 9986 2332211 1224568888776432 1111 1233367788999999999998742 122256778999
Q ss_pred eeeeeeecCcccccCccccccccccccccccccceEEEecccchh
Q 007339 553 YLEMIRVDDVASLNDVLPREQGLVNIGKFSHDLKVLRFHYCHNLK 597 (607)
Q Consensus 553 ~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~~l~ 597 (607)
.|+|++|. ++... ...+...+ -...+++|++|++++|.--.
T Consensus 248 ~L~L~~n~-i~~~~-~~~l~~~l--~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 248 ELGLNDCL-LSARG-AAAVVDAF--SKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EEECTTCC-CCHHH-HHHHHHHH--HTCSSCCCCEEECCSSCCBH
T ss_pred EEECCCCC-Cchhh-HHHHHHHH--hhccCCCeEEEECcCCcCCH
Confidence 99999996 33221 00000111 00238999999999987444
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=128.42 Aligned_cols=139 Identities=17% Similarity=0.140 Sum_probs=111.7
Q ss_pred cccchhhhcCCCCceEEEccCCCCccCC--ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-h
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVLP--SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-C 419 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~--~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~ 419 (607)
..+|..+ .+.++.|++++|.++.++ ..|..+++|++|++++|.+....+ .+.++.+|++|++++|.++.+++ .
T Consensus 24 ~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 24 NKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp SSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred ccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH
Confidence 3456543 345688999999988774 347889999999999988877666 78899999999999999887765 4
Q ss_pred ccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 420 MEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 420 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
+..+++|++|++++|.++.+++..+..+++|+.|+|++|..... .+..+..++ +|+.|+++.|.+.
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~-~L~~L~L~~N~l~ 166 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV-APGAFDTLH-SLSTLNLLANPFN 166 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB-CTTTTTTCT-TCCEEECCSCCEE
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE-CHHHhcCCC-CCCEEEecCcCCc
Confidence 88899999999999999988888788999999999998865433 235677888 9999999888764
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.46 E-value=2.2e-15 Score=158.08 Aligned_cols=15 Identities=0% Similarity=-0.015 Sum_probs=7.1
Q ss_pred cccccceeeeeeecc
Q 007339 524 DLEVDKSVRLFACKI 538 (607)
Q Consensus 524 ~l~~L~~L~L~~~~~ 538 (607)
.+++|+.|+|++|.+
T Consensus 339 ~~~~L~~L~Ls~n~i 353 (461)
T 1z7x_W 339 QNRFLLELQISNNRL 353 (461)
T ss_dssp HCSSCCEEECCSSBC
T ss_pred hCCCccEEEccCCcc
Confidence 334455555555444
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.46 E-value=1.2e-13 Score=120.44 Aligned_cols=128 Identities=24% Similarity=0.239 Sum_probs=109.9
Q ss_pred CCCCceEEEccCCCCc--cCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhh-hHHhccCCCCCCee
Q 007339 353 HMNGLKVLNLSHTDIE--VLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEE-VLECMEMLENLSHL 429 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~L 429 (607)
..++++.|++++|.++ .+|..+..+++|++|++++|.+... +.+.++++|++|++++|.++. +|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 8888889999999999999987765 788999999999999999997 88888889999999
Q ss_pred eccCCcCCcCC-CccccCCCCCCEEEcccCcchhhhhH--HHhhcccccccEEEee
Q 007339 430 YLSSLQLKKFP-TGILPRLRNLYKLKLSFGNEALRETV--EEAASLSDGLDYFEGC 482 (607)
Q Consensus 430 ~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~--~~l~~l~~~L~~L~l~ 482 (607)
++++|.++.++ +..++.+++|+.|++++|........ ..+..++ +|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence 99999999875 25568999999999999876554432 5678888 99988765
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=1.5e-13 Score=145.60 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=127.1
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLEN 425 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~ 425 (607)
+|..+ +++|+.|++++|.++.+| ..+++|++|++++|.+.. +|.+.+ +|++|++++|+++.+|. .+++
T Consensus 74 lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l~~lp~---~l~~ 141 (571)
T 3cvr_A 74 LPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQLTMLPE---LPAL 141 (571)
T ss_dssp CCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCCSCCCC---CCTT
T ss_pred cCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcCCCCCC---cCcc
Confidence 66654 378999999999999998 557999999999998876 554444 99999999999999887 6899
Q ss_pred CCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEE
Q 007339 426 LSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYC 505 (607)
Q Consensus 426 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 505 (607)
|+.|++++|.++.+|. .+++|+.|++++|....... +. + +|+.|++++|.+..++. +.. .|
T Consensus 142 L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~---l~--~-~L~~L~Ls~N~L~~lp~-~~~----~L---- 202 (571)
T 3cvr_A 142 LEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE---LP--E-SLEALDVSTNLLESLPA-VPV----RN---- 202 (571)
T ss_dssp CCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---CC--T-TCCEEECCSSCCSSCCC-CC-----------
T ss_pred ccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch---hh--C-CCCEEECcCCCCCchhh-HHH----hh----
Confidence 9999999999999876 57899999999987654222 44 6 99999999999876665 221 12
Q ss_pred EEeecchhhhhhcccccccccccceeeeeeeccCCCCCcccCCcccceeeeeeecCcc
Q 007339 506 LVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRVDDVA 563 (607)
Q Consensus 506 l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 563 (607)
+...+.|+.|+|++|.+...+..+..+++|+.|++++|+..+
T Consensus 203 ----------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 203 ----------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ---------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ----------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 011134566777777666554444446667777777765333
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=1.7e-13 Score=128.75 Aligned_cols=139 Identities=22% Similarity=0.238 Sum_probs=115.4
Q ss_pred ccccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-
Q 007339 343 ERRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC- 419 (607)
Q Consensus 343 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~- 419 (607)
...+|..+ .++|++|++++|.++.+ |..|..+++|++|++++|.+....+ .+.++++|++|++++|.++.+|+.
T Consensus 31 l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 31 HASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 34466653 38899999999999976 5678899999999999998866555 578999999999999999988764
Q ss_pred ccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 420 MEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 420 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
+..+++|++|++++|.++.+|..+ ..+++|+.|++++|....... ..+..++ +|+.|+++.|.+.
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~-~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPH-GAFDRLS-SLTHAYLFGNPWD 172 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCT-TTTTTCT-TCCEEECTTSCBC
T ss_pred hCcchhhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCH-HHHhCCC-CCCEEEeeCCCcc
Confidence 688999999999999999887765 899999999999987653332 5678889 9999999988764
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=2.9e-13 Score=124.06 Aligned_cols=130 Identities=18% Similarity=0.185 Sum_probs=112.2
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhh-hHHhccCCCCCCe
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEE-VLECMEMLENLSH 428 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~-l~~~~~~l~~L~~ 428 (607)
+..+++|+.|++++|.++.++ .+..+++|++|++++|.+....+ .+.++++|++|++++|.++. .|..++.+++|++
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 678999999999999887765 68999999999999999887555 89999999999999999984 6788999999999
Q ss_pred eeccCCc-CCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 429 LYLSSLQ-LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 429 L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
|++++|. ++.++ .+..+++|+.|++++|...... .+..++ +|+.|++++|.+.
T Consensus 141 L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~---~l~~l~-~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 141 IDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR---GIEDFP-KLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT---TGGGCS-SCCEEEECBC---
T ss_pred EEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH---HhccCC-CCCEEEeeCcccC
Confidence 9999998 88886 3689999999999998765432 678899 9999999998864
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=3.5e-13 Score=125.71 Aligned_cols=123 Identities=18% Similarity=0.142 Sum_probs=108.2
Q ss_pred ccccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhh-HHh
Q 007339 343 ERRIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEV-LEC 419 (607)
Q Consensus 343 ~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-~~~ 419 (607)
.+..|..+|..+++|+.|++++|.++.++. .|..+++|++|++++|.+....+ .+.++++|++|++++|.++.+ |..
T Consensus 45 ~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 45 TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence 333456678999999999999999997765 79999999999999999887777 699999999999999999977 567
Q ss_pred ccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhh
Q 007339 420 MEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRET 465 (607)
Q Consensus 420 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 465 (607)
+..+++|++|+|++|.++.+++..+..+++|+.|++++|...-...
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 8999999999999999999988888999999999999987554433
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.43 E-value=7.5e-16 Score=164.14 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=147.2
Q ss_pred cCCCCceEEEccCCCCccCCccccCCccCcEeeccccc-------------CCCCCC-cccCCCCCCEEe-ccCCchhhh
Q 007339 352 VHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCG-------------RLKRVP-SLAKLLALQYLD-LEGTWIEEV 416 (607)
Q Consensus 352 ~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~-~~~~l~~L~~L~-l~~~~l~~l 416 (607)
..+++|+.|++++|.++.+|..++.+++|+.|++++|. .....| .+.++.+|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56889999999999999999999999999999997664 344455 678888888888 666654444
Q ss_pred HH------hccC--CCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc
Q 007339 417 LE------CMEM--LENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 417 ~~------~~~~--l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
+. .+.. ...|+.|++++|.++++|. ++++++|+.|+|++|... ..+..++.++ +|+.|+++.|.+..
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~-~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR--ALPPALAALR-CLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC--CCCGGGGGCT-TCCEEECCSSCCCC
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCccccc--ccchhhhcCC-CCCEEECCCCCCCC
Confidence 32 1111 1369999999999999875 699999999999998766 3345788999 99999999888754
Q ss_pred cccccccccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCC--CCcccCCcccceeeeeeecCccccc
Q 007339 489 FNRYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICER--EEPIVLPEDVQYLEMIRVDDVASLN 566 (607)
Q Consensus 489 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~l~ 566 (607)
++ .+.++++|+.|+|++|.+.+. +..+..+++|+.|++++|+ ++.+|
T Consensus 501 lp------------------------------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 501 VD------------------------------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp CG------------------------------GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred Cc------------------------------ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCc
Confidence 32 234467899999999998877 3447788899999999986 33333
Q ss_pred C-ccccccccccccccccccceEEE
Q 007339 567 D-VLPREQGLVNIGKFSHDLKVLRF 590 (607)
Q Consensus 567 ~-~~~~~~~l~~~~~~~~~L~~L~l 590 (607)
. ...+ ...+|+|+.|++
T Consensus 550 ~~~~~l-------~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERL-------AEMLPSVSSILT 567 (567)
T ss_dssp SCTTHH-------HHHCTTCSEEEC
T ss_pred cHHHHH-------HHHCcccCccCC
Confidence 2 1111 134788888864
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=5.4e-13 Score=123.45 Aligned_cols=131 Identities=23% Similarity=0.278 Sum_probs=112.3
Q ss_pred CCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeee
Q 007339 354 MNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLY 430 (607)
Q Consensus 354 l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~ 430 (607)
.++|+.|++++|.++.++. .+..+++|++|++++|.+....+ .+.++++|++|++++|.++.+|+. ++.+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 4689999999999998775 47899999999999998876655 578999999999999999988764 68999999999
Q ss_pred ccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCc
Q 007339 431 LSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKL 486 (607)
Q Consensus 431 l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~ 486 (607)
+++|.++.+++..+.++++|+.|++++|.... .....+..++ +|+.|+++.|.+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~-~L~~L~l~~N~~ 160 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLT-SLQYIWLHDNPW 160 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCT-TCCEEECCSCCB
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCC-CccEEEecCCCe
Confidence 99999999999888999999999999987543 2224577888 999999988754
No 121
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=5.8e-14 Score=152.13 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=111.9
Q ss_pred hcCCCCceEEEccCCCCcc-----CCccccCCccCcEeecccccCCC----CCC-cccCCCCCCEEeccCCchhhhHHhc
Q 007339 351 FVHMNGLKVLNLSHTDIEV-----LPSSISDLTNLRSLLLRWCGRLK----RVP-SLAKLLALQYLDLEGTWIEEVLECM 420 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~~~----~~~-~~~~l~~L~~L~l~~~~l~~l~~~~ 420 (607)
..++++|++|++++|.+.. ++.....+++|++|++++|.... .++ .+.++++|++|++++|.+..+|..+
T Consensus 160 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred HhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence 3467888888888887542 22234567778888888777652 222 3557788888888888777777777
Q ss_pred cCCCCCCeeeccCCc---------------------------CCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhccc
Q 007339 421 EMLENLSHLYLSSLQ---------------------------LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLS 473 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~---------------------------l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 473 (607)
..+++|+.|+++++. ...+ +..+..+++|+.|++++|..........+..++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 777777777775321 1111 223456677777777777633333324456677
Q ss_pred ccccEEEeeecCccc-cccccccccCCcceeEEEEee---------cchhhhhhcccccccccccceeeeeeeccCCCCC
Q 007339 474 DGLDYFEGCFSKLKD-FNRYVKSTDGRGSKNYCLVLS---------ESWMYYMFIRDLITDLEVDKSVRLFACKICEREE 543 (607)
Q Consensus 474 ~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~l~l~~~---------~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 543 (607)
+|+.|+++ +.+.. ....+ ...+++|+.+++..+ .+..........+.++++|++|++..+.+.+...
T Consensus 319 -~L~~L~L~-~~~~~~~l~~~-~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~ 395 (592)
T 3ogk_B 319 -NLEVLETR-NVIGDRGLEVL-AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395 (592)
T ss_dssp -TCCEEEEE-GGGHHHHHHHH-HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHH
T ss_pred -CCCEEecc-CccCHHHHHHH-HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHH
Confidence 77777776 32221 11111 112345677666621 1111111111122345667777775555432211
Q ss_pred c--ccCCcccceeeeee
Q 007339 544 P--IVLPEDVQYLEMIR 558 (607)
Q Consensus 544 ~--~~~~~~L~~L~l~~ 558 (607)
. ...+++|+.|++++
T Consensus 396 ~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHHHCCSCCEEEEEE
T ss_pred HHHHhhCCCCcEEEEee
Confidence 1 12255666666663
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=3.2e-13 Score=121.32 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=113.6
Q ss_pred hcCCCCceEEEccCCCCccCCccccCCc-cCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhc-cCCCCCCe
Q 007339 351 FVHMNGLKVLNLSHTDIEVLPSSISDLT-NLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECM-EMLENLSH 428 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~-~~l~~L~~ 428 (607)
+..+++|+.|++++|.++.+|. +..+. +|++|++++|.+... +.+.++++|++|++++|.++.+|+.+ +.+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 5689999999999999998875 55554 999999999987765 78899999999999999999888654 89999999
Q ss_pred eeccCCcCCcCCC-ccccCCCCCCEEEcccCcchhhhh--HHHhhcccccccEEEeeecCccc
Q 007339 429 LYLSSLQLKKFPT-GILPRLRNLYKLKLSFGNEALRET--VEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 429 L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
|++++|.++.+|. ..+..+++|+.|++++|....... ...+..++ +|+.|+++.|....
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~-~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-TCSEETTEECCHHH
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC-ccceeCCCcCCHHH
Confidence 9999999998876 356899999999999987653322 12478899 99999999888654
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.40 E-value=1.1e-13 Score=140.00 Aligned_cols=226 Identities=13% Similarity=0.066 Sum_probs=152.1
Q ss_pred EEEccCCCCcc-CCccccCCccCcEeecccccCCCCCC-----cccCCC-CCCEEeccCCchhhh-HHhccCC-----CC
Q 007339 359 VLNLSHTDIEV-LPSSISDLTNLRSLLLRWCGRLKRVP-----SLAKLL-ALQYLDLEGTWIEEV-LECMEML-----EN 425 (607)
Q Consensus 359 ~L~l~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~-~L~~L~l~~~~l~~l-~~~~~~l-----~~ 425 (607)
.+.++.|.++. +|..+...++|++|++++|.+....+ .+.+++ +|++|++++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888884 44444555669999999998776553 466788 899999999998854 4444443 99
Q ss_pred CCeeeccCCcCCcCCCcc----ccCC-CCCCEEEcccCcchhhhhHHH----hhcc-cccccEEEeeecCccc-----cc
Q 007339 426 LSHLYLSSLQLKKFPTGI----LPRL-RNLYKLKLSFGNEALRETVEE----AASL-SDGLDYFEGCFSKLKD-----FN 490 (607)
Q Consensus 426 L~~L~l~~~~l~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~----l~~l-~~~L~~L~l~~~~~~~-----~~ 490 (607)
|++|++++|.++..++.. +..+ ++|++|++++|..... .... +..+ + +|++|+++.|.+.. +.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK-SSSEFKQAFSNLPA-SITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHTTSCT-TCCEEECTTSCGGGSCHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH-HHHHHHHHHHhCCC-ceeEEEccCCcCCHHHHHHHH
Confidence 999999999998877653 3444 8999999999875443 3333 3443 6 99999999998874 22
Q ss_pred cccccccCCcceeEEEEeecchhh--hhhcccccccc-cccceeeeeeeccCCCCCc------ccCCcccceeeeeeecC
Q 007339 491 RYVKSTDGRGSKNYCLVLSESWMY--YMFIRDLITDL-EVDKSVRLFACKICEREEP------IVLPEDVQYLEMIRVDD 561 (607)
Q Consensus 491 ~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~------~~~~~~L~~L~l~~~~~ 561 (607)
..+... ...|+.|.+..+. ... .......+..+ ++|+.|+|++|.+...+.. ...+++|+.|++++|.
T Consensus 160 ~~l~~~-~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~- 236 (362)
T 3goz_A 160 QILAAI-PANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC- 236 (362)
T ss_dssp HHHHTS-CTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-
T ss_pred HHHhcC-CccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-
Confidence 222211 1358888776432 111 11112233445 4899999999998763321 2235689999999994
Q ss_pred cccccCccccccccccccccccccceEEEeccc
Q 007339 562 VASLNDVLPREQGLVNIGKFSHDLKVLRFHYCH 594 (607)
Q Consensus 562 l~~l~~~~~~~~~l~~~~~~~~~L~~L~l~~c~ 594 (607)
+++.+ ... +...-..+++|++|++++|.
T Consensus 237 l~~~~-~~~----l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 237 LHGPS-LEN----LKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCC-HHH----HHHTTTTTTTCSEEEEEHHH
T ss_pred CCcHH-HHH----HHHHHhcCCCccEEEeccCC
Confidence 43332 111 11111668999999999997
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1e-12 Score=119.62 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=86.1
Q ss_pred cccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hcc
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CME 421 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~ 421 (607)
..+|..+ .++|+.|++++|.++.+|..|..+++|++|++++|.+....+ .+.++++|++|++++|.++.+++ .+.
T Consensus 23 ~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~ 99 (193)
T 2wfh_A 23 KVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99 (193)
T ss_dssp SSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred CcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhC
Confidence 3455543 256788888888888777777888888888888887776665 67788888888888888776665 577
Q ss_pred CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcch
Q 007339 422 MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEA 461 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 461 (607)
.+++|++|+|++|.++.+++..+..+++|+.|++++|...
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7888888888888888887777777888888888877543
No 125
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=1.2e-13 Score=149.78 Aligned_cols=230 Identities=15% Similarity=0.092 Sum_probs=139.0
Q ss_pred cCCCCceEEEccCCCCc-cCCccccC-Cc-cCcEeecccccCCCC--CC-cccCCCCCCEEeccCCchhh-----hHHhc
Q 007339 352 VHMNGLKVLNLSHTDIE-VLPSSISD-LT-NLRSLLLRWCGRLKR--VP-SLAKLLALQYLDLEGTWIEE-----VLECM 420 (607)
Q Consensus 352 ~~l~~L~~L~l~~~~~~-~l~~~~~~-l~-~L~~L~l~~~~~~~~--~~-~~~~l~~L~~L~l~~~~l~~-----l~~~~ 420 (607)
..+++|++|++++|.++ ..+..+.. ++ +|++|++++|..... ++ ...++++|++|++++|.++. ++...
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 36778888888887665 22223333 33 488888877763221 11 23467788888888886541 34445
Q ss_pred cCCCCCCeeeccCCcCCcCCC----ccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc-ccc-ccc
Q 007339 421 EMLENLSHLYLSSLQLKKFPT----GILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD-FNR-YVK 494 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~-~~~-~~~ 494 (607)
..+++|++|++++|.++.+.. ..+.++++|++|++++|.... ....+..++ +|++|+++.+.... ... ...
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCT-TCCEEEECBCCCCTTCTTSSSC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhh-HHHhhcccccccccchHHHHHH
Confidence 567788888888887763332 234577888888888765433 335567777 88888886432211 111 111
Q ss_pred cccCCcceeEEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc--ccCCcccceeeeeeecCcccccCccccc
Q 007339 495 STDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP--IVLPEDVQYLEMIRVDDVASLNDVLPRE 572 (607)
Q Consensus 495 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 572 (607)
...+.+|+.+.+... .....+..+..+++|++|+|++|.+...... +..+++|+.|+++++..-..++
T Consensus 266 l~~~~~L~~L~l~~~----~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~------ 335 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYM----GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE------ 335 (592)
T ss_dssp CCCCTTCCEEEETTC----CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH------
T ss_pred hhccccccccCcccc----chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHH------
Confidence 122334666555321 1222345566789999999999985432211 4678899999998543211111
Q ss_pred cccccccccccccceEEEec----------ccchhh
Q 007339 573 QGLVNIGKFSHDLKVLRFHY----------CHNLKN 598 (607)
Q Consensus 573 ~~l~~~~~~~~~L~~L~l~~----------c~~l~~ 598 (607)
.+...+++|++|++++ |..+.+
T Consensus 336 ----~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~ 367 (592)
T 3ogk_B 336 ----VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367 (592)
T ss_dssp ----HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCH
T ss_pred ----HHHHhCCCCCEEEeecCccccccccccCccCH
Confidence 1225689999999996 887764
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.39 E-value=6.8e-13 Score=120.88 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=77.9
Q ss_pred eEEEccCCCCccCCccccCCccCcEeecccccCCCCCC--cccCCCCCCEEeccCCchhhh-HHhccCCCCCCeeeccCC
Q 007339 358 KVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP--SLAKLLALQYLDLEGTWIEEV-LECMEMLENLSHLYLSSL 434 (607)
Q Consensus 358 ~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~~ 434 (607)
+.+++++|.++.+|..+.. +|++|++++|.+....+ .+.++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5666666666666654433 66666666666555444 266666677777776666655 445666666777777776
Q ss_pred cCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 435 QLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
.++.+++..+.++++|+.|++++|..... .+..+..++ +|+.|+++.|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~-~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCV-MPGSFEHLN-SLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEE-CTTSSTTCT-TCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCee-CHHHhhcCC-CCCEEEeCCCCcc
Confidence 66666666566666677777766654322 224455666 6666666666553
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=4.6e-13 Score=147.24 Aligned_cols=114 Identities=19% Similarity=0.159 Sum_probs=96.9
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLE 424 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~ 424 (607)
+++..|..+++|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+| .+.++.+|++|+|++|.|+.+|..+++++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 4455688999999999999999999988889999999999999877 566 89999999999999999999998999999
Q ss_pred CCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcch
Q 007339 425 NLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEA 461 (607)
Q Consensus 425 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 461 (607)
+|++|+|++|.++.+|.. |+++++|+.|+|++|...
T Consensus 294 ~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred CCCEEECCCCCCCccChh-hhcCCCccEEeCCCCccC
Confidence 999999999999988877 689999999999988754
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=1.9e-12 Score=117.93 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=103.1
Q ss_pred cccchhhhcCCCCceEEEccCCCCccCCcc--ccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-h
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVLPSS--ISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-C 419 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~ 419 (607)
+.+|..++ .+++.|++++|.++.++.. +..+++|++|++++|.+....| .+.++++|++|++++|+++.+++ .
T Consensus 21 ~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 21 KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence 45676543 3899999999999988753 8999999999999999988877 89999999999999999998776 4
Q ss_pred ccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhh
Q 007339 420 MEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALR 463 (607)
Q Consensus 420 ~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 463 (607)
+..+++|++|++++|.++.+++..+..+++|+.|++++|...-.
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 88999999999999999999888889999999999999876533
No 129
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=1.1e-12 Score=132.49 Aligned_cols=132 Identities=26% Similarity=0.256 Sum_probs=67.1
Q ss_pred CceEEEccCCCCccCCcc-cc-CCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccCCCCCCeeec
Q 007339 356 GLKVLNLSHTDIEVLPSS-IS-DLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEMLENLSHLYL 431 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l 431 (607)
.++.|++++|.++.++.. +. .+++|++|++++|.+....+ .+.++++|++|+|++|+++.+++ .+..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 345555555555544432 33 55555555555555544444 45555555555555555555443 3455555555555
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHh---hcccccccEEEeeecCcccc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEA---ASLSDGLDYFEGCFSKLKDF 489 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~~L~~L~l~~~~~~~~ 489 (607)
++|.++.+++..|.++++|+.|+|++|....... ..+ ..++ +|+.|+++.|.+..+
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~-~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLP-KLMLLDLSSNKLKKL 178 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CT-TCCEEECCSSCCCCC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCC-cCCEEECCCCCCCcc
Confidence 5555555555555555555555555554332111 111 3455 555555555555443
No 130
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=2.3e-11 Score=124.07 Aligned_cols=274 Identities=12% Similarity=0.085 Sum_probs=161.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcc-cccchHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKP---NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENED-KVRRPGRL 78 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~l 78 (607)
+..+.+.|+|++|+|||++|+.+++...... ..-..++|+++....+...++..++..++........ .......+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 3456899999999999999999998874210 0012378889888888899999999999765332221 22223444
Q ss_pred HHHHh-cCCcEEEEEecCCCcccc----cccc---cCCCCC--CCCcEEEEEeCchhh--------hhhcccceeecccC
Q 007339 79 LGMLK-AKEKFVLILDDMWEAFPL----QEIG---IPEPSE--ENGCKLVITTRLYRV--------CRSMKCKQVAVELL 140 (607)
Q Consensus 79 ~~~~~-~~~~~LlVlDdv~~~~~~----~~l~---~~~~~~--~~~~~IliTtR~~~~--------~~~~~~~~~~l~~L 140 (607)
.+.+. .+++.+||||+++..... +.+. ...... ..+..+|.||+.... ..++....+.++++
T Consensus 122 ~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l 201 (387)
T 2v1u_A 122 VKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPY 201 (387)
T ss_dssp HHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCC
T ss_pred HHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCC
Confidence 44443 356899999999876421 2221 111111 345677888875522 22222234899999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcC---CchHH-HHHHHHhh---c--C--CccHHHHHHHHHHHHhcc
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECG---CLPLA-IVTVAASM---S--G--EEEIYEWQNALNELRGRL 209 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~PLa-l~~~a~~l---~--~--~~~~~~~~~~l~~l~~~~ 209 (607)
+.++..+++.+++..... .....++..+.+++.++ |.|.. +.++.... . + .-+.+.+...+....
T Consensus 202 ~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~--- 277 (387)
T 2v1u_A 202 TAPQLRDILETRAEEAFN-PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE--- 277 (387)
T ss_dssp CHHHHHHHHHHHHHHHBC-TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh---
Confidence 999999999988642100 01113456788888888 99943 33322211 1 1 123455555555432
Q ss_pred ccCCCCchhhhhhHHhhhcCCChhhHHHHHHHhh-cCCCCCccChHHHHHHH--HHhCCccccCCchhhHHHHHHHHHHH
Q 007339 210 RSLNDVDTKVFGRLEFSYHRLKDEKLQQCFLYCA-QYPEDFAIPKDKLIDYW--IAEGFIDEVKDVPAKYDRGHTILNRL 286 (607)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~L~~~~~~~~~l~la-~f~~~~~i~~~~l~~~w--~~~~~~~~~~~~~~~~~~~~~~l~~L 286 (607)
...+.-++..++ ++.+..+..++ .+.+...+....+.... .++.. ...+........+++.|
T Consensus 278 ----------~~~~~~~~~~l~-~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~L 342 (387)
T 2v1u_A 278 ----------RDRVSEVVRTLP-LHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTL----GLEHVTLRRVSGIISEL 342 (387)
T ss_dssp ----------HHHHHHHHHSSC-HHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHT----TCCCCCHHHHHHHHHHH
T ss_pred ----------hchHHHHHHcCC-HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHH
Confidence 123555678888 67777777666 34332334444333322 11111 01122345677889999
Q ss_pred HHccccccc
Q 007339 287 VNWCLLESA 295 (607)
Q Consensus 287 ~~~sll~~~ 295 (607)
...|+++..
T Consensus 343 ~~~gli~~~ 351 (387)
T 2v1u_A 343 DMLGIVKSR 351 (387)
T ss_dssp HHTTSEEEE
T ss_pred HhCCCeEEE
Confidence 999999984
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.34 E-value=2.4e-12 Score=117.22 Aligned_cols=127 Identities=21% Similarity=0.204 Sum_probs=109.0
Q ss_pred ceEEEccCCCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHH-hccCCCCCCeeeccCCc
Q 007339 357 LKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLE-CMEMLENLSHLYLSSLQ 435 (607)
Q Consensus 357 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~ 435 (607)
-++++++++.++.+|..+. ++|++|++++|.+....+.+.++.+|++|++++|.++.+++ .+..+++|++|+|++|.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3678999999999997654 68999999999876433389999999999999999998875 58999999999999999
Q ss_pred CCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 436 LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 436 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
++.+++..|..+++|+.|+|++|..... ....+..++ +|+.|+++.|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~-~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVV-PEGAFNDLS-ALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCT-TCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCee-ChhhhhcCc-cccEEEeCCCCee
Confidence 9999998889999999999999876532 224577899 9999999988764
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=1.6e-12 Score=115.78 Aligned_cols=115 Identities=21% Similarity=0.229 Sum_probs=102.6
Q ss_pred cccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH--Hhc
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL--ECM 420 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~--~~~ 420 (607)
+.+|.. +..+++|++|++++|.++.+ ..+..+++|++|++++|.+...+| .+.++++|++|++++|.++.+| ..+
T Consensus 39 ~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l 116 (168)
T 2ell_A 39 GKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPL 116 (168)
T ss_dssp TBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGG
T ss_pred hhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHH
Confidence 356665 67899999999999999987 678999999999999999888777 6667999999999999999876 689
Q ss_pred cCCCCCCeeeccCCcCCcCCC---ccccCCCCCCEEEcccCcc
Q 007339 421 EMLENLSHLYLSSLQLKKFPT---GILPRLRNLYKLKLSFGNE 460 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~~---~~~~~l~~L~~L~l~~~~~ 460 (607)
..+++|++|++++|.++.+++ ..+..+++|+.|++++|..
T Consensus 117 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 117 KKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp SSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred hcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 999999999999999999987 5679999999999998764
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=1.8e-12 Score=112.83 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=99.0
Q ss_pred cccchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhH--Hhc
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVL--ECM 420 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~--~~~ 420 (607)
+.+|. .+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+...+| .+.++++|++|++++|.++.+| ..+
T Consensus 32 ~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~ 109 (149)
T 2je0_A 32 GKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109 (149)
T ss_dssp TBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred hHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH
Confidence 35666 368999999999999999987 678999999999999999888777 6777999999999999999765 789
Q ss_pred cCCCCCCeeeccCCcCCcCCC---ccccCCCCCCEEEcc
Q 007339 421 EMLENLSHLYLSSLQLKKFPT---GILPRLRNLYKLKLS 456 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~~~---~~~~~l~~L~~L~l~ 456 (607)
+.+++|++|++++|.++..++ ..+..+++|+.|+++
T Consensus 110 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 110 KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999999999999987 567999999999886
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=1.4e-12 Score=116.99 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=110.6
Q ss_pred cccCCccCcEeecccccCCCCCCcccCCC-CCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCC
Q 007339 373 SISDLTNLRSLLLRWCGRLKRVPSLAKLL-ALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLY 451 (607)
Q Consensus 373 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~ 451 (607)
.+..+.+|+.|++++|.+.. ++.+..+. +|++|++++|.++.+ +.++.+++|++|++++|.++.+|+..+..+++|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 46778999999999998774 47666666 999999999999987 6789999999999999999999888779999999
Q ss_pred EEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcceeEEEEeecchhhhhhccccccccccccee
Q 007339 452 KLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKNYCLVLSESWMYYMFIRDLITDLEVDKSV 531 (607)
Q Consensus 452 ~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~L~~L 531 (607)
.|++++|.......+..+..++ +|+.|+++.|.+...+... ...+..+++|+.|
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~-~L~~L~l~~N~i~~~~~~~-------------------------~~~~~~l~~L~~L 145 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLK-SLTYLCILRNPVTNKKHYR-------------------------LYVIYKVPQVRVL 145 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCT-TCCEEECCSSGGGGSTTHH-------------------------HHHHHHCTTCSEE
T ss_pred EEECCCCcCCcchhhHhhhcCC-CCCEEEecCCCCCCcHhHH-------------------------HHHHHHCCcccee
Confidence 9999999875444345788899 9999999998875443220 0123445778888
Q ss_pred eeeeeccC
Q 007339 532 RLFACKIC 539 (607)
Q Consensus 532 ~L~~~~~~ 539 (607)
++++|...
T Consensus 146 d~~~n~~~ 153 (176)
T 1a9n_A 146 DFQKVKLK 153 (176)
T ss_dssp TTEECCHH
T ss_pred CCCcCCHH
Confidence 88877653
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.30 E-value=6e-12 Score=134.02 Aligned_cols=121 Identities=25% Similarity=0.238 Sum_probs=73.0
Q ss_pred CceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCC
Q 007339 356 GLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSL 434 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~ 434 (607)
.|+.|++++|.++.+|. ++.+++|+.|++++|.+. .+| .+.++++|++|+|++|.++.+| .++++++|+.|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 36666666666666664 666666666666666655 444 6666666666666666666665 5666666666666666
Q ss_pred cCCcCC-CccccCCCCCCEEEcccCcchhhhh--HHHhhcccccccEEE
Q 007339 435 QLKKFP-TGILPRLRNLYKLKLSFGNEALRET--VEEAASLSDGLDYFE 480 (607)
Q Consensus 435 ~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~l~~~L~~L~ 480 (607)
.+++++ +..++++++|+.|+|++|....... ...+..++ +|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp-~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP-SVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT-TCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc-ccCccC
Confidence 666664 4445666666666666665433211 12233355 565554
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.30 E-value=6.2e-12 Score=112.93 Aligned_cols=105 Identities=28% Similarity=0.328 Sum_probs=48.5
Q ss_pred CCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeeec
Q 007339 355 NGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLYL 431 (607)
Q Consensus 355 ~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l 431 (607)
++|+.|++++|.++.++. .+..+++|++|++++|.+....+ .+.++++|++|++++|.++.+|+. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 344455555554444432 23444455555555444433333 234444555555555544444432 344445555555
Q ss_pred cCCcCCcCCCccccCCCCCCEEEcccCc
Q 007339 432 SSLQLKKFPTGILPRLRNLYKLKLSFGN 459 (607)
Q Consensus 432 ~~~~l~~~~~~~~~~l~~L~~L~l~~~~ 459 (607)
++|.++.+++..+..+++|+.|++++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 5554444444444444445555554443
No 137
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.29 E-value=1.6e-12 Score=140.89 Aligned_cols=204 Identities=13% Similarity=0.074 Sum_probs=115.4
Q ss_pred hcCCCCceEEEccCCCCcc-----CCccccCCccCcEeecccccC-CC--CCC-cccCCCCCCEEeccCC-chhhhHHhc
Q 007339 351 FVHMNGLKVLNLSHTDIEV-----LPSSISDLTNLRSLLLRWCGR-LK--RVP-SLAKLLALQYLDLEGT-WIEEVLECM 420 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~~~~~-----l~~~~~~l~~L~~L~l~~~~~-~~--~~~-~~~~l~~L~~L~l~~~-~l~~l~~~~ 420 (607)
+.++++|++|++++|.++. ++.....+++|++|++++|.. .. .++ .+.++++|++|++++| .+..+|..+
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 4578899999998887653 233334677889999988761 10 111 2345688899999888 566777777
Q ss_pred cCCCCCCeeeccCCc--------------------------CCcCC----CccccCCCCCCEEEcccCcchhhhhHHHhh
Q 007339 421 EMLENLSHLYLSSLQ--------------------------LKKFP----TGILPRLRNLYKLKLSFGNEALRETVEEAA 470 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~--------------------------l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~ 470 (607)
..+++|+.|+++.+. +.... +.++..+++|++|++++|..........+.
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~ 311 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC 311 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHT
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHh
Confidence 777788888755441 11111 112236788888999888744333333456
Q ss_pred cccccccEEEeeecCccc-cccccccccCCcceeEEEEee-------cchhhhhhcccccccccccceeeeeeeccCCCC
Q 007339 471 SLSDGLDYFEGCFSKLKD-FNRYVKSTDGRGSKNYCLVLS-------ESWMYYMFIRDLITDLEVDKSVRLFACKICERE 542 (607)
Q Consensus 471 ~l~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~l~l~~~-------~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 542 (607)
.++ +|+.|+++.| +.. ....+. ..+++|+.+++..+ ..............++++|+.|.+..+.+....
T Consensus 312 ~~~-~L~~L~l~~~-~~~~~l~~l~-~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~ 388 (594)
T 2p1m_B 312 QCP-KLQRLWVLDY-IEDAGLEVLA-STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA 388 (594)
T ss_dssp TCT-TCCEEEEEGG-GHHHHHHHHH-HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred cCC-CcCEEeCcCc-cCHHHHHHHH-HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence 778 8888888876 321 111111 12455777776321 111111111111123567777766555544221
Q ss_pred Cc--ccCCcccceeeee
Q 007339 543 EP--IVLPEDVQYLEMI 557 (607)
Q Consensus 543 ~~--~~~~~~L~~L~l~ 557 (607)
.. ...+++|+.|+++
T Consensus 389 ~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 389 LITIARNRPNMTRFRLC 405 (594)
T ss_dssp HHHHHHHCTTCCEEEEE
T ss_pred HHHHHhhCCCcceeEee
Confidence 11 2235667777777
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.27 E-value=1.5e-12 Score=141.11 Aligned_cols=205 Identities=12% Similarity=0.027 Sum_probs=100.2
Q ss_pred CCccCcEeecccccCCCCCC-ccc-CCCCCCEEeccCC-chhh--hHHhccCCCCCCeeeccCCcCCcCCCcc----ccC
Q 007339 376 DLTNLRSLLLRWCGRLKRVP-SLA-KLLALQYLDLEGT-WIEE--VLECMEMLENLSHLYLSSLQLKKFPTGI----LPR 446 (607)
Q Consensus 376 ~l~~L~~L~l~~~~~~~~~~-~~~-~l~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L~l~~~~l~~~~~~~----~~~ 446 (607)
.+++|++|++++|.+....+ .+. .+++|++|++++| .+.. ++....++++|++|++++|.++...... ...
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 45566666666655433322 332 4566666666666 4432 3444445666666666666544332211 224
Q ss_pred CCCCCEEEcccCc-chhhhhHHH-hhcccccccEEEeeec-CccccccccccccCCcceeEEEEe---------------
Q 007339 447 LRNLYKLKLSFGN-EALRETVEE-AASLSDGLDYFEGCFS-KLKDFNRYVKSTDGRGSKNYCLVL--------------- 508 (607)
Q Consensus 447 l~~L~~L~l~~~~-~~~~~~~~~-l~~l~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l~~--------------- 508 (607)
+++|++|++++|. ......+.. ...++ +|+.|+++.| .+..++..+.. +.+|+.+.+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCP-NLKSLKLNRAVPLEKLATLLQR--APQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCT-TCCEEECCTTSCHHHHHHHHHH--CTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCC-CCcEEecCCCCcHHHHHHHHhc--CCcceEcccccccCccchhhHHHHHH
Confidence 5566666666553 111111222 23345 6666666554 22222221111 12233332110
Q ss_pred ------------ecchhhhhhcccccccccccceeeeeeeccCCCCC--cccCCcccceeeeeeecCcccccCccccccc
Q 007339 509 ------------SESWMYYMFIRDLITDLEVDKSVRLFACKICEREE--PIVLPEDVQYLEMIRVDDVASLNDVLPREQG 574 (607)
Q Consensus 509 ------------~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 574 (607)
+.........+..+..+++|++|+|++|.+..... ....+++|++|++++|. ++- .+.
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~--~~~-~l~----- 331 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI--EDA-GLE----- 331 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG--HHH-HHH-----
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc--CHH-HHH-----
Confidence 00001111122333467889999999888542211 14567889999999883 211 111
Q ss_pred cccccccccccceEEEecc
Q 007339 575 LVNIGKFSHDLKVLRFHYC 593 (607)
Q Consensus 575 l~~~~~~~~~L~~L~l~~c 593 (607)
.+...+++|++|++++|
T Consensus 332 --~l~~~~~~L~~L~L~~~ 348 (594)
T 2p1m_B 332 --VLASTCKDLRELRVFPS 348 (594)
T ss_dssp --HHHHHCTTCCEEEEECS
T ss_pred --HHHHhCCCCCEEEEecC
Confidence 11245899999999554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=1.6e-11 Score=109.24 Aligned_cols=104 Identities=24% Similarity=0.286 Sum_probs=93.7
Q ss_pred CceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeeeccC
Q 007339 356 GLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLYLSS 433 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~ 433 (607)
..+.+++++|.++.+|..+. ++|++|++++|.+....| .+.++.+|++|++++|.++.+|+. +..+++|++|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 46789999999999997664 889999999999888777 799999999999999999988875 58999999999999
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCcch
Q 007339 434 LQLKKFPTGILPRLRNLYKLKLSFGNEA 461 (607)
Q Consensus 434 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~ 461 (607)
|.++.+++..+.++++|+.|+|++|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 9999999988899999999999998653
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.26 E-value=2.6e-11 Score=108.86 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=110.6
Q ss_pred CceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeeeccC
Q 007339 356 GLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLYLSS 433 (607)
Q Consensus 356 ~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~ 433 (607)
..+.++++++.++.+|..+. ++|+.|++++|.+....+ .+.++++|++|++++|.++.+|+. +..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45788999999999886543 789999999999876666 678999999999999999988764 68999999999999
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccc
Q 007339 434 LQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 434 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
|.++.+++..+.++++|+.|++++|.... .....+..++ +|+.|+++.|.+..
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~-~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLT-SLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCT-TCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCc-ccCEEEecCCCeec
Confidence 99999999888999999999999987653 2334567889 99999999998765
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=1.9e-11 Score=109.14 Aligned_cols=103 Identities=22% Similarity=0.299 Sum_probs=93.0
Q ss_pred ceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCCCCCCeeeccCC
Q 007339 357 LKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEMLENLSHLYLSSL 434 (607)
Q Consensus 357 L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~~ 434 (607)
-+.+++++|.+..+|..+. ++|++|++++|.+....| .+.++++|++|+|++|+++.+|+. +.++++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4789999999999998665 899999999999888777 899999999999999999999875 589999999999999
Q ss_pred cCCcCCCccccCCCCCCEEEcccCcch
Q 007339 435 QLKKFPTGILPRLRNLYKLKLSFGNEA 461 (607)
Q Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~~~~~ 461 (607)
.++.+++..+.++++|+.|++++|...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999999987899999999999998654
No 142
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.24 E-value=2e-10 Score=117.26 Aligned_cols=272 Identities=15% Similarity=0.142 Sum_probs=160.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCc-ccccchHHHHHHHh-
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENE-DKVRRPGRLLGMLK- 83 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~~~- 83 (607)
+.+.|+|++|+|||++|+.++....... -..++|+++....+...+...++..++....... ........+.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~ 122 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE 122 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh
Confidence 4899999999999999999999875221 1247888888888888999999998876432211 12222333333332
Q ss_pred cCCcEEEEEecCCCcc--cccccccCCCCC-C---CCcEEEEEeCchhhhhh--------cccceeecccCCHHHHHHHh
Q 007339 84 AKEKFVLILDDMWEAF--PLQEIGIPEPSE-E---NGCKLVITTRLYRVCRS--------MKCKQVAVELLSKQEAFNLF 149 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~-~---~~~~IliTtR~~~~~~~--------~~~~~~~l~~L~~~ea~~L~ 149 (607)
.+++.+||||+++... ....+...+... . .+..||++|+....... +....+.+++++.++..+++
T Consensus 123 ~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l 202 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDIL 202 (389)
T ss_dssp TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHH
T ss_pred cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHH
Confidence 3668999999998762 222332222211 1 35678888776533222 22224899999999999999
Q ss_pred HhhhCCCCCCCccchHHHHHHHHHHc---------CCchHHHHHHHHh-h--c---CC--ccHHHHHHHHHHHHhccccC
Q 007339 150 IDGVGSSILQVPILNKEIINEVVEEC---------GCLPLAIVTVAAS-M--S---GE--EEIYEWQNALNELRGRLRSL 212 (607)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~PLal~~~a~~-l--~---~~--~~~~~~~~~l~~l~~~~~~~ 212 (607)
..++..... .....++.++.+++.+ +|.|..+..+... . . +. -+.+..........
T Consensus 203 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~------ 275 (389)
T 1fnn_A 203 LDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL------ 275 (389)
T ss_dssp HHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS------
T ss_pred HHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh------
Confidence 988643110 0122678889999999 7887544333221 1 1 11 12222333322211
Q ss_pred CCCchhhhhhHHhhhcCCChhhHHHHHHHhhcCC---CCCccChHHHHHHHHHhCCccccCCchhhHHHHHHHHHHHHHc
Q 007339 213 NDVDTKVFGRLEFSYHRLKDEKLQQCFLYCAQYP---EDFAIPKDKLIDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNW 289 (607)
Q Consensus 213 ~~~~~~~~~~~~~s~~~L~~~~~~~~~l~la~f~---~~~~i~~~~l~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 289 (607)
...+.-.+..|+ .+.+.++..++.+. .+..++...+...+... .......+........++++|...
T Consensus 276 -------~~~~~~~l~~l~-~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~l~~L~~~ 345 (389)
T 1fnn_A 276 -------FGISEEVLIGLP-LHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV--CEEYGERPRVHSQLWSYLNDLREK 345 (389)
T ss_dssp -------CCCCHHHHHHSC-HHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH--HHHTTCCCCCHHHHHHHHHHHHHT
T ss_pred -------hhhHHHHHHcCC-HHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH--HHHcCCCCCCHHHHHHHHHHHHhC
Confidence 122334456777 67777777777543 22245555554443221 000001112235567889999999
Q ss_pred ccccccC
Q 007339 290 CLLESAE 296 (607)
Q Consensus 290 sll~~~~ 296 (607)
+++....
T Consensus 346 gli~~~~ 352 (389)
T 1fnn_A 346 GIVETRQ 352 (389)
T ss_dssp TSSEEEE
T ss_pred CCeEEee
Confidence 9999854
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=8.2e-13 Score=145.24 Aligned_cols=158 Identities=18% Similarity=0.078 Sum_probs=95.1
Q ss_pred CCCccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCCCccc
Q 007339 365 TDIEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGIL 444 (607)
Q Consensus 365 ~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 444 (607)
|.+...+..+..+.+|+.|+|++|.+....+.+.++.+|++|+|++|.++.+|..++++++|++|+|++|.++.+|.. +
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~-~ 289 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE-L 289 (727)
T ss_dssp -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSS-G
T ss_pred cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChh-h
Confidence 334444566777888888888888766333367788888888888888888888788888888888888888877655 4
Q ss_pred cCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccc-cccccccCCcceeEEEEeecchhhhhhcccccc
Q 007339 445 PRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFN-RYVKSTDGRGSKNYCLVLSESWMYYMFIRDLIT 523 (607)
Q Consensus 445 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 523 (607)
++|++|+.|+|++|.+. ..+..+..++ +|+.|+|+.|.+.... ..+...
T Consensus 290 ~~l~~L~~L~L~~N~l~--~lp~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~--------------------------- 339 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNMVT--TLPWEFGNLC-NLQFLGVEGNPLEKQFLKILTEK--------------------------- 339 (727)
T ss_dssp GGGTTCSEEECCSSCCC--CCCSSTTSCT-TCCCEECTTSCCCSHHHHHHHHH---------------------------
T ss_pred cCCCCCCEEECCCCCCC--ccChhhhcCC-CccEEeCCCCccCCCChHHHhhc---------------------------
Confidence 78888888888877653 2234477788 8888888877775422 111100
Q ss_pred cccccceeeeeeeccCCCCCcccCCcccceeeeeee
Q 007339 524 DLEVDKSVRLFACKICEREEPIVLPEDVQYLEMIRV 559 (607)
Q Consensus 524 ~l~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~l~~~ 559 (607)
. ..+..++|++|.+.+ ..+..|+.|+++.|
T Consensus 340 ~-~~~~~l~l~~N~l~~-----~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 340 S-VTGLIFYLRDNRPEI-----PLPHERRFIEINTD 369 (727)
T ss_dssp H-HHHHHHHHHHCCCCC-----CCCCC---------
T ss_pred c-hhhhHHhhccCcccC-----cCccccceeEeecc
Confidence 0 112236778887764 34667888888877
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=1.3e-13 Score=126.43 Aligned_cols=117 Identities=23% Similarity=0.264 Sum_probs=67.6
Q ss_pred CccCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhHHhccCCCCCCeeeccCCcCCcCCCccccC
Q 007339 367 IEVLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVLECMEMLENLSHLYLSSLQLKKFPTGILPR 446 (607)
Q Consensus 367 ~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 446 (607)
++.+|..+..+++|++|++++|.+.. +|.+.++++|++|++++|.++.+|..+..+++|++|++++|.++.+| . +.+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~-~~~ 113 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-G-IEK 113 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-H-HHH
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-c-ccc
Confidence 33444456666666666666665444 34556666666666666666666555555566666666666666554 2 456
Q ss_pred CCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCcc
Q 007339 447 LRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 447 l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
+++|+.|++++|.......+..+..++ +|++|+++.|.+.
T Consensus 114 l~~L~~L~l~~N~i~~~~~~~~l~~l~-~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGNPLY 153 (198)
T ss_dssp HHHSSEEEESEEECCCHHHHHHHTTTT-TCSEEEECSCHHH
T ss_pred CCCCCEEECCCCcCCchhHHHHHhcCC-CCCEEEecCCccc
Confidence 666666666665544333334555666 6666666655543
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.21 E-value=2.4e-10 Score=116.35 Aligned_cols=264 Identities=13% Similarity=0.048 Sum_probs=157.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccC----CCC-CCeEEEEEeCCCC-CHHHHHHHHHHHHccCCCCC--cccccch
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEK----PNK-FNDVIWVTVSQPL-DLFKLQTEIATALKQSLPEN--EDKVRRP 75 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~----~~~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~--~~~~~~~ 75 (607)
..+.+.|+|++|+|||++|+.+++..... ... ...++|+++.... +...++..++..+....... .......
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 123 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHH
Confidence 35689999999999999999999886321 011 2348888887766 88888899988884322111 1112233
Q ss_pred HHHHHHHhcCCcEEEEEecCCCccc--cccc-ccCCCCCCCCcEEEEEeCchhhh--------hhcccceeecccCCHHH
Q 007339 76 GRLLGMLKAKEKFVLILDDMWEAFP--LQEI-GIPEPSEENGCKLVITTRLYRVC--------RSMKCKQVAVELLSKQE 144 (607)
Q Consensus 76 ~~l~~~~~~~~~~LlVlDdv~~~~~--~~~l-~~~~~~~~~~~~IliTtR~~~~~--------~~~~~~~~~l~~L~~~e 144 (607)
..+...+ ..++.+||||+++.... .... ...+.....+..+|+||+..... .+.. ..+.+++++.++
T Consensus 124 ~~l~~~l-~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~-~~i~l~~l~~~~ 201 (384)
T 2qby_B 124 DKIKNGT-RNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLG-PSVIFKPYDAEQ 201 (384)
T ss_dssp HHHHHHH-SSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCC-CEEEECCCCHHH
T ss_pred HHHHHHh-ccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCC-CeEEECCCCHHH
Confidence 4444444 44445999999987632 1122 11111111567888898865321 1111 258999999999
Q ss_pred HHHHhHhhhCC--CCCCCccchHHHHHHHHHHcC---CchH-HHHHHHHh--hcC---CccHHHHHHHHHHHHhccccCC
Q 007339 145 AFNLFIDGVGS--SILQVPILNKEIINEVVEECG---CLPL-AIVTVAAS--MSG---EEEIYEWQNALNELRGRLRSLN 213 (607)
Q Consensus 145 a~~L~~~~~~~--~~~~~~~~~~~~~~~i~~~~~---g~PL-al~~~a~~--l~~---~~~~~~~~~~l~~l~~~~~~~~ 213 (607)
..+++.+++.. .... ..++..+.+++.++ |.|. ++.++... +.. .-+.+.+...+.+..
T Consensus 202 ~~~il~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~------- 271 (384)
T 2qby_B 202 LKFILSKYAEYGLIKGT---YDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE------- 271 (384)
T ss_dssp HHHHHHHHHHHTSCTTS---CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhcccCC---cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------
Confidence 99999988642 1111 14567788888888 8876 44433222 221 123555666555432
Q ss_pred CCchhhhhhHHhhhcCCChhhHHHHHHHhhcCCCCCccChHHH--HHHHHHhCCccccCCchhhHHHHHHHHHHHHHccc
Q 007339 214 DVDTKVFGRLEFSYHRLKDEKLQQCFLYCAQYPEDFAIPKDKL--IDYWIAEGFIDEVKDVPAKYDRGHTILNRLVNWCL 291 (607)
Q Consensus 214 ~~~~~~~~~~~~s~~~L~~~~~~~~~l~la~f~~~~~i~~~~l--~~~w~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sl 291 (607)
...+..++..++ ++.+..+..++. ... . ..+ ...-+++.+ ...+........++..|...++
T Consensus 272 ------~~~~~~~~~~l~-~~~~~~l~al~~-~~~-~---~~~~~~~~~~~~~~----g~~~~~~~~~~~~l~~L~~~gl 335 (384)
T 2qby_B 272 ------QERLIEAVKALP-FHYKLALRSLIE-SED-V---MSAHKMYTDLCNKF----KQKPLSYRRFSDIISELDMFGI 335 (384)
T ss_dssp ------HHHHHHHHHSSC-HHHHHHHHHHHT-CCB-H---HHHHHHHHHHHHHT----TCCCCCHHHHHHHHHHHHHTTS
T ss_pred ------cchHHHHHHcCC-HHHHHHHHHHHH-hcc-c---ChHHHHHHHHHHHc----CCCCCCHHHHHHHHHHHHhCCC
Confidence 134566678888 777777777776 111 0 111 111122211 0112233566788999999999
Q ss_pred cccc
Q 007339 292 LESA 295 (607)
Q Consensus 292 l~~~ 295 (607)
++..
T Consensus 336 i~~~ 339 (384)
T 2qby_B 336 VKIR 339 (384)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=6.6e-13 Score=121.75 Aligned_cols=127 Identities=25% Similarity=0.215 Sum_probs=108.2
Q ss_pred hhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCCCCCCe
Q 007339 350 FFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEMLENLSH 428 (607)
Q Consensus 350 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l~~L~~ 428 (607)
.|..+++|++|++++|.++.+| .+..+++|++|++++|.+. .+| .+..+++|++|++++|.++.+| .++.+++|++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~ 119 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV 119 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence 4789999999999999999998 8899999999999999877 455 6777899999999999999987 6889999999
Q ss_pred eeccCCcCCcCCC-ccccCCCCCCEEEcccCcchhhh---------hHHHhhcccccccEEE
Q 007339 429 LYLSSLQLKKFPT-GILPRLRNLYKLKLSFGNEALRE---------TVEEAASLSDGLDYFE 480 (607)
Q Consensus 429 L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~---------~~~~l~~l~~~L~~L~ 480 (607)
|++++|.++.++. ..+..+++|+.|++++|...... ....+..++ +|+.|+
T Consensus 120 L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~-~L~~Ld 180 (198)
T 1ds9_A 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP-NLKKLD 180 (198)
T ss_dssp EEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS-SCSEEC
T ss_pred EECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCC-CcEEEC
Confidence 9999999998765 45689999999999998654331 123477888 999887
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.12 E-value=4.4e-10 Score=114.52 Aligned_cols=273 Identities=12% Similarity=0.122 Sum_probs=154.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCc-ccccchHHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENE-DKVRRPGRLLGML 82 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~~ 82 (607)
..+.+.|+|++|+|||+||+.++.........-..++|+++....+...+...++..++....... ........+.+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l 123 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV 123 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998874321102247888887766777888888777765432211 1222233444444
Q ss_pred hc-CCcEEEEEecCCCccc------ccccccCCCC-CCCCcEEEEEeCchhhhhh--------cccceeecccCCHHHHH
Q 007339 83 KA-KEKFVLILDDMWEAFP------LQEIGIPEPS-EENGCKLVITTRLYRVCRS--------MKCKQVAVELLSKQEAF 146 (607)
Q Consensus 83 ~~-~~~~LlVlDdv~~~~~------~~~l~~~~~~-~~~~~~IliTtR~~~~~~~--------~~~~~~~l~~L~~~ea~ 146 (607)
.. +++.+||||+++.... +..+...+.. ...+..+|+||+....... +....+.+++++.++..
T Consensus 124 ~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~ 203 (386)
T 2qby_A 124 RDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELE 203 (386)
T ss_dssp HTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHH
T ss_pred hccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHH
Confidence 33 4589999999986532 1122111111 1335567888875543221 22234899999999999
Q ss_pred HHhHhhhCCCCCCCccchHHHHHHHHHHcC---CchHHH-HHHHHhhc-----C--CccHHHHHHHHHHHHhccccCCCC
Q 007339 147 NLFIDGVGSSILQVPILNKEIINEVVEECG---CLPLAI-VTVAASMS-----G--EEEIYEWQNALNELRGRLRSLNDV 215 (607)
Q Consensus 147 ~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~PLal-~~~a~~l~-----~--~~~~~~~~~~l~~l~~~~~~~~~~ 215 (607)
+++.+++..... .....++..+.+++.++ |.|..+ .++..... + .-+.+.+..++.+..
T Consensus 204 ~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~--------- 273 (386)
T 2qby_A 204 DILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE--------- 273 (386)
T ss_dssp HHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH---------
T ss_pred HHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh---------
Confidence 999987632110 01125677888888887 998743 33322211 1 123444444444322
Q ss_pred chhhhhhHHhhhcCCChhhHHHHHHHhhcCCC-C-CccChHHHHHHH--HHhCCccccCCchhhHHHHHHHHHHHHHccc
Q 007339 216 DTKVFGRLEFSYHRLKDEKLQQCFLYCAQYPE-D-FAIPKDKLIDYW--IAEGFIDEVKDVPAKYDRGHTILNRLVNWCL 291 (607)
Q Consensus 216 ~~~~~~~~~~s~~~L~~~~~~~~~l~la~f~~-~-~~i~~~~l~~~w--~~~~~~~~~~~~~~~~~~~~~~l~~L~~~sl 291 (607)
...+.-.+..++ +..+..+..++.... + ..+....+.... +++.+ ...+........+++.|...++
T Consensus 274 ----~~~~~~~~~~l~-~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~----g~~~~~~~~~~~~l~~L~~~gl 344 (386)
T 2qby_A 274 ----RDRVRDIILTLP-FHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL----GVEAVTQRRVSDIINELDMVGI 344 (386)
T ss_dssp ----HHHHHHHHHTSC-HHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH----TCCCCCHHHHHHHHHHHHHHTS
T ss_pred ----hchHHHHHHcCC-HHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhCCC
Confidence 234556677888 677777777764221 1 223333322211 11110 0011123456678999999999
Q ss_pred cccc
Q 007339 292 LESA 295 (607)
Q Consensus 292 l~~~ 295 (607)
++..
T Consensus 345 i~~~ 348 (386)
T 2qby_A 345 LTAK 348 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.10 E-value=4.7e-10 Score=106.35 Aligned_cols=162 Identities=10% Similarity=0.106 Sum_probs=97.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCC------------------CCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNK------------------FNDVIWVTVSQPLDLFKLQTEIATALKQSLPE 67 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~------------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 67 (607)
+.+.|+|++|+|||++|+.+++........ +...+.+..... ........+.+.+....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 122 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASR-TKVEDTRDLLDNVQYAP-- 122 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCG-GGHHHHHHHHHSCCCSC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCccc-ccHHHHHHHHHHhhhch--
Confidence 579999999999999999999887532100 001111111110 00111111111110000
Q ss_pred CcccccchHHHHHHHhcCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchhhh-hh--cccceeecccCCH
Q 007339 68 NEDKVRRPGRLLGMLKAKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYRVC-RS--MKCKQVAVELLSK 142 (607)
Q Consensus 68 ~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~~~-~~--~~~~~~~l~~L~~ 142 (607)
..+++.+||+||++... .++.+...+.....+.++|+||+..... .. .....+++++++.
T Consensus 123 ---------------~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~ 187 (250)
T 1njg_A 123 ---------------ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDV 187 (250)
T ss_dssp ---------------SSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred ---------------hcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCH
Confidence 13467999999998753 3444444443334567888888754322 11 1123389999999
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHh
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAAS 188 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~ 188 (607)
+|..+++.+++....... .++..+.|++.++|.|..+..+...
T Consensus 188 ~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 188 EQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999998875432222 5677899999999999988777653
No 149
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=7.4e-10 Score=103.36 Aligned_cols=161 Identities=10% Similarity=0.126 Sum_probs=100.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|++|+|||++|+.+++..... ......+.++.........+...+........ ...+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 101 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIKEFARTAP----------------IGGA 101 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC----------------STTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHHHHHHHHHhcccC----------------CCcc
Confidence 348999999999999999999876322 11112455555554444443333322222110 0135
Q ss_pred CcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchhhh-hhc--ccceeecccCCHHHHHHHhHhhhCCCCCCC
Q 007339 86 EKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYRVC-RSM--KCKQVAVELLSKQEAFNLFIDGVGSSILQV 160 (607)
Q Consensus 86 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~~~-~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 160 (607)
++.++|+||++... ..+.+...+.....+.++|+||+..... ... ....+++.+++.++..+++.+.+......-
T Consensus 102 ~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 181 (226)
T 2chg_A 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI 181 (226)
T ss_dssp SCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 78999999998763 2333333333334567888888754321 111 122489999999999999998874332222
Q ss_pred ccchHHHHHHHHHHcCCchHHHHHHH
Q 007339 161 PILNKEIINEVVEECGCLPLAIVTVA 186 (607)
Q Consensus 161 ~~~~~~~~~~i~~~~~g~PLal~~~a 186 (607)
.++..+.+++.++|.|..+..+.
T Consensus 182 ---~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 182 ---TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 56788899999999998654443
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=3.7e-10 Score=112.31 Aligned_cols=99 Identities=16% Similarity=0.172 Sum_probs=59.6
Q ss_pred CCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC--cccC--------CCCCCEEeccCCchhhhHH-hccC
Q 007339 354 MNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP--SLAK--------LLALQYLDLEGTWIEEVLE-CMEM 422 (607)
Q Consensus 354 l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~--------l~~L~~L~l~~~~l~~l~~-~~~~ 422 (607)
+++|++|+|++|.+......-+.++.++.+.+..+ .+| .|.+ +.+|+.+++.. +++.+++ .|..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 67788888888887711111112222333333333 122 4556 77777777777 6666665 4677
Q ss_pred CCCCCeeeccCCcCCcCCCccccCCCCCCEEEccc
Q 007339 423 LENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSF 457 (607)
Q Consensus 423 l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 457 (607)
|++|+.|++++|.+..+++..|..+.++..+.+..
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 77777777777777777777677766666665443
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=1.1e-09 Score=97.48 Aligned_cols=97 Identities=22% Similarity=0.249 Sum_probs=83.4
Q ss_pred cccccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh
Q 007339 342 LERRIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC 419 (607)
Q Consensus 342 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~ 419 (607)
..+.+|..++ ++|++|++++|.++.+ |..|..+++|++|++++|.+....+ .+.++++|++|+|++|.++.+|+.
T Consensus 23 ~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~ 99 (174)
T 2r9u_A 23 RLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG 99 (174)
T ss_dssp CCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence 3455777542 8899999999999987 5578999999999999998887666 578999999999999999999875
Q ss_pred -ccCCCCCCeeeccCCcCCcCCC
Q 007339 420 -MEMLENLSHLYLSSLQLKKFPT 441 (607)
Q Consensus 420 -~~~l~~L~~L~l~~~~l~~~~~ 441 (607)
+..+++|++|++++|.+...+.
T Consensus 100 ~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 100 AFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTTTCTTCSEEECCSSCBCTTBG
T ss_pred HhccccCCCEEEeCCCCcccccc
Confidence 8899999999999999886654
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=7.2e-10 Score=110.17 Aligned_cols=134 Identities=18% Similarity=0.188 Sum_probs=85.1
Q ss_pred ccchhhhcC--------CCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCch-
Q 007339 345 RIPECFFVH--------MNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWI- 413 (607)
Q Consensus 345 ~~~~~~~~~--------l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l- 413 (607)
.||+.+|.+ |++|+.++++. .++.++. .|.+|++|+.++++.|......+ .|.++.++..+.+..+..
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 578888888 99999999988 7887765 68889999999998887665555 666766666666554211
Q ss_pred ---h-----------------------hhHHh----------------------------ccCCCCCCeeeccCCcCCcC
Q 007339 414 ---E-----------------------EVLEC----------------------------MEMLENLSHLYLSSLQLKKF 439 (607)
Q Consensus 414 ---~-----------------------~l~~~----------------------------~~~l~~L~~L~l~~~~l~~~ 439 (607)
. .++.. ...+++|+.|++++|+++.+
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I 241 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTI 241 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEE
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCccee
Confidence 0 01110 01256777777777777777
Q ss_pred CCccccCCCCCCEEEcccCcchhhhhHHHhhccccccc-EEEee
Q 007339 440 PTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLD-YFEGC 482 (607)
Q Consensus 440 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~-~L~l~ 482 (607)
+...|.+|++|+.+++..| ........|..+. +|+ .+.+.
T Consensus 242 ~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~-~L~~~l~l~ 282 (329)
T 3sb4_A 242 PDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCG-RLAGTLELP 282 (329)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT-TCCEEEEEC
T ss_pred cHhhhhCCCCCCEEECCcc--cceehHHHhhCCh-hccEEEEEc
Confidence 7766777777777777654 1112223455555 555 55554
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=4.6e-09 Score=106.80 Aligned_cols=226 Identities=11% Similarity=0.008 Sum_probs=147.4
Q ss_pred cccchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhcc
Q 007339 344 RRIPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECME 421 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~ 421 (607)
..|+..+|.++ +|+.+.+..+ ++.++. .|.++ +|+.+.+.. .+....+ .|.++.+|+.+++++|+++.++....
T Consensus 125 ~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF 200 (401)
T 4fdw_A 125 KSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF 200 (401)
T ss_dssp CEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT
T ss_pred CEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhE
Confidence 34677778876 7999998876 666654 45554 699999885 3343333 78899999999999998998887655
Q ss_pred CCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCcc
Q 007339 422 MLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGS 501 (607)
Q Consensus 422 ~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 501 (607)
.+.+|+.+.+.. +++.++...|.++++|+.+++..+- .......|.. . +|+.+.+. +++..+.... ...+..|
T Consensus 201 ~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~l--~~I~~~aF~~-~-~L~~i~lp-~~i~~I~~~a-F~~c~~L 273 (401)
T 4fdw_A 201 VYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPENV--STIGQEAFRE-S-GITTVKLP-NGVTNIASRA-FYYCPEL 273 (401)
T ss_dssp TTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTTC--CEECTTTTTT-C-CCSEEEEE-TTCCEECTTT-TTTCTTC
T ss_pred eecccCEEEeCC-chheehhhHhhCCCCCCEEecCCCc--cCcccccccc-C-CccEEEeC-CCccEEChhH-hhCCCCC
Confidence 578999999974 4888888888999999999998642 1112234444 6 78888883 4444433322 2335567
Q ss_pred eeEEEEeecch--hhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccc
Q 007339 502 KNYCLVLSESW--MYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNI 578 (607)
Q Consensus 502 ~~l~l~~~~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~ 578 (607)
+.+.+...... .........|.+|++|+.+.|.+ ++...+.. +..+++|+.+.|..+ ++.++. ..+
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~-~aF------- 342 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINF-SAF------- 342 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECT-TSS-------
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcH-HhC-------
Confidence 77766532110 01123445677888888888874 34433332 556677888877543 455442 122
Q ss_pred cccccccceEEEecc
Q 007339 579 GKFSHDLKVLRFHYC 593 (607)
Q Consensus 579 ~~~~~~L~~L~l~~c 593 (607)
.++ +|+.++++++
T Consensus 343 -~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 343 -NNT-GIKEVKVEGT 355 (401)
T ss_dssp -SSS-CCCEEEECCS
T ss_pred -CCC-CCCEEEEcCC
Confidence 556 7888877764
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=1.3e-09 Score=96.78 Aligned_cols=106 Identities=17% Similarity=0.075 Sum_probs=88.4
Q ss_pred cCcEeecccccCCCCCCcccCCCCCCEEeccCCchhhhH-HhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEccc
Q 007339 379 NLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIEEVL-ECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSF 457 (607)
Q Consensus 379 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 457 (607)
..+.+++++|.+......+ ..+|++|++++|.++.++ ..+..+++|++|+|++|.++.+++..|.++++|+.|+|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4678999988766533345 388999999999999884 5689999999999999999999999889999999999999
Q ss_pred CcchhhhhHHHhhcccccccEEEeeecCccc
Q 007339 458 GNEALRETVEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 458 ~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
|..... ....+..++ +|+.|+++.|.+..
T Consensus 88 N~l~~~-~~~~~~~l~-~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSI-PRGAFDNLK-SLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCC-CTTTTTTCT-TCCEEECCSSCBCT
T ss_pred CccCEe-CHHHhcCCC-CCCEEEeCCCCCCC
Confidence 876533 224588899 99999999998753
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=1.3e-09 Score=109.32 Aligned_cols=104 Identities=20% Similarity=0.122 Sum_probs=87.8
Q ss_pred eEEEccCC-CCccCCccccCCccCcEeeccc-ccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccCCCCCCeeeccC
Q 007339 358 KVLNLSHT-DIEVLPSSISDLTNLRSLLLRW-CGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEMLENLSHLYLSS 433 (607)
Q Consensus 358 ~~L~l~~~-~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~ 433 (607)
..++.+++ .++.+|. +..+.+|+.|+|++ |.+....+ .+.++.+|++|+|++|+|+.+++ .++++++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 34588887 8999998 99999999999996 77776665 78999999999999999997765 678999999999999
Q ss_pred CcCCcCCCccccCCCCCCEEEcccCcchhh
Q 007339 434 LQLKKFPTGILPRLRNLYKLKLSFGNEALR 463 (607)
Q Consensus 434 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~ 463 (607)
|.++.+|+..+..++ |+.|+|.+|...-.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999999988876666 99999998865433
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.88 E-value=4.7e-09 Score=104.06 Aligned_cols=153 Identities=14% Similarity=0.074 Sum_probs=93.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.+.|+|++|+|||++|+.+++.... ...++++.......++.. .+... -
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~------~~~~~~~~~~~~~~~l~~----~l~~~-------------------~ 88 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGV------NLRVTSGPAIEKPGDLAA----ILANS-------------------L 88 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTC------CEEEECTTTCCSHHHHHH----HHTTT-------------------C
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC------CEEEEeccccCChHHHHH----HHHHh-------------------c
Confidence 367899999999999999999987631 245565544433222221 11110 1
Q ss_pred CCcEEEEEecCCCccc--ccccccCCCC------------------CCCCcEEEEEeCchhhhh-h--ccc-ceeecccC
Q 007339 85 KEKFVLILDDMWEAFP--LQEIGIPEPS------------------EENGCKLVITTRLYRVCR-S--MKC-KQVAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~--~~~l~~~~~~------------------~~~~~~IliTtR~~~~~~-~--~~~-~~~~l~~L 140 (607)
.+..+|+||+++.... ...+...+.. .....++|.||....... . -.. ..+.+.++
T Consensus 89 ~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 89 EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 3567899999987632 1111111000 012355676666432211 1 112 23889999
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHHHhh
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVAASM 189 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a~~l 189 (607)
+.+|..+++.+.+......- .++..+.+++.++|+|..+..+...+
T Consensus 169 ~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 169 TPEELAQGVMRDARLLGVRI---TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999999988875543222 56888999999999998877665543
No 157
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=1.7e-08 Score=99.93 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=97.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|++|+|||++|+.+++..... .....+++++.........+ +.+++.+...... +..+
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~--------------~~~~ 106 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHELLGR-SYADGVLELNASDDRGIDVV-RNQIKHFAQKKLH--------------LPPG 106 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHGG-GHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCCC--------------CCTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhcCC-cccCCEEEecCccccChHHH-HHHHHHHHhcccc--------------CCCC
Confidence 348999999999999999999886321 11112555555443333322 2223322210000 0034
Q ss_pred CcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchhh-hhhc--ccceeecccCCHHHHHHHhHhhhCCCCCCC
Q 007339 86 EKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYRV-CRSM--KCKQVAVELLSKQEAFNLFIDGVGSSILQV 160 (607)
Q Consensus 86 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~~-~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 160 (607)
++.++|+|+++... ..+.+...+.....++++|+||+...- .... ....+++.+++.++..+++.+++......-
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKY 186 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCC
Confidence 58999999998763 233443333333456778888765332 1111 222489999999999999998774332222
Q ss_pred ccchHHHHHHHHHHcCCchHH-HHHH
Q 007339 161 PILNKEIINEVVEECGCLPLA-IVTV 185 (607)
Q Consensus 161 ~~~~~~~~~~i~~~~~g~PLa-l~~~ 185 (607)
.++.++.+++.++|.|.. +..+
T Consensus 187 ---~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 187 ---TNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp ---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 567889999999999954 4444
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.78 E-value=4.9e-08 Score=94.51 Aligned_cols=152 Identities=9% Similarity=0.073 Sum_probs=93.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCC--C-C-eEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNK--F-N-DVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRL 78 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~--f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 78 (607)
+..+.+.|+|++|+|||++|+.++......... . . .+++|++....+...++..|++++................+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 456789999999999999999999998543211 1 1 37788888888899999999999965422222222223333
Q ss_pred HHHH--hcCCcEEEEEecCCCcccccccccCCC--CC-CCCcEEEEEeCchhh---------hhhcccceeecccCCHHH
Q 007339 79 LGML--KAKEKFVLILDDMWEAFPLQEIGIPEP--SE-ENGCKLVITTRLYRV---------CRSMKCKQVAVELLSKQE 144 (607)
Q Consensus 79 ~~~~--~~~~~~LlVlDdv~~~~~~~~l~~~~~--~~-~~~~~IliTtR~~~~---------~~~~~~~~~~l~~L~~~e 144 (607)
.... ..++++++|||+++....-+-+...+. .. .....||.++..... ..++....+.+.+++.+|
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~e 202 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNE 202 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHH
T ss_pred HHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHH
Confidence 3332 246789999999998752221211111 11 112223334432211 123333448999999999
Q ss_pred HHHHhHhhhC
Q 007339 145 AFNLFIDGVG 154 (607)
Q Consensus 145 a~~L~~~~~~ 154 (607)
..+++.+++.
T Consensus 203 l~~Il~~Rl~ 212 (318)
T 3te6_A 203 LQQMIITRLK 212 (318)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998873
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.74 E-value=1.2e-09 Score=109.86 Aligned_cols=133 Identities=14% Similarity=0.083 Sum_probs=86.1
Q ss_pred CCCceEEEccCCCCccC-----Ccccc-CCccCcEeecccccCCCCCC--cccCCCCCCEEeccCCchhhhH-----Hhc
Q 007339 354 MNGLKVLNLSHTDIEVL-----PSSIS-DLTNLRSLLLRWCGRLKRVP--SLAKLLALQYLDLEGTWIEEVL-----ECM 420 (607)
Q Consensus 354 l~~L~~L~l~~~~~~~l-----~~~~~-~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~l~-----~~~ 420 (607)
+++|+.|++++|.++.. ...+. ...+|+.|+|++|.+..... ....+.+|+.|+|++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46788888888887632 12222 23688888888887654322 2334567888888888776332 222
Q ss_pred -cCCCCCCeeeccCCcCCcCCCc----cccCCCCCCEEEcccCcchhhhh---HHHhhcccccccEEEeeecCcc
Q 007339 421 -EMLENLSHLYLSSLQLKKFPTG----ILPRLRNLYKLKLSFGNEALRET---VEEAASLSDGLDYFEGCFSKLK 487 (607)
Q Consensus 421 -~~l~~L~~L~l~~~~l~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~~L~~L~l~~~~~~ 487 (607)
...++|+.|+|++|.++..... .+..+++|++|+|++|....... ...+...+ +|++|++++|.+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNGAG 224 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSCCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCCCC
Confidence 3467888888888887653222 23567888888888876543321 24556677 8888888887764
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.71 E-value=4.3e-09 Score=105.94 Aligned_cols=135 Identities=18% Similarity=0.198 Sum_probs=100.6
Q ss_pred CCCCceEEEccCCCCcc--CCccccCCccCcEeecccccCCCCCC-cc-----cCCCCCCEEeccCCchhh-----hHHh
Q 007339 353 HMNGLKVLNLSHTDIEV--LPSSISDLTNLRSLLLRWCGRLKRVP-SL-----AKLLALQYLDLEGTWIEE-----VLEC 419 (607)
Q Consensus 353 ~l~~L~~L~l~~~~~~~--l~~~~~~l~~L~~L~l~~~~~~~~~~-~~-----~~l~~L~~L~l~~~~l~~-----l~~~ 419 (607)
..++|+.|++++|.++. +......+++|+.|+|++|.+..... .+ ...++|++|+|++|.++. ++..
T Consensus 99 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 99 GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp CSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 34799999999999872 22223446789999999998754332 22 356889999999998864 4556
Q ss_pred ccCCCCCCeeeccCCcCCcCC----CccccCCCCCCEEEcccCcchhhhh---HHHhhcccccccEEEeeecCccc
Q 007339 420 MEMLENLSHLYLSSLQLKKFP----TGILPRLRNLYKLKLSFGNEALRET---VEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 420 ~~~l~~L~~L~l~~~~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
+..+++|++|+|++|.++... ...+..+++|++|+|++|....... ...+...+ +|++|++++|.+..
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~-~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-SLELLHLYFNELSS 253 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS-SCCEEECTTSSCCH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC-CCCEEeccCCCCCH
Confidence 678999999999999987533 2335678899999999987654322 24456678 99999999998864
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=4.4e-08 Score=99.52 Aligned_cols=108 Identities=16% Similarity=0.150 Sum_probs=49.8
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHh-ccCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLEC-MEML 423 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~-~~~l 423 (607)
|+...|..|++|+.++++.|.++.++.....+.+|+.+.+..+ +..... .|.++.+|+.+++..+ ++.++.. +.+
T Consensus 171 I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~- 247 (401)
T 4fdw_A 171 LKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE- 247 (401)
T ss_dssp ECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-
T ss_pred ehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-
Confidence 3334455555555555555555554443223445555555422 222222 4555555555555442 3333332 222
Q ss_pred CCCCeeeccCCcCCcCCCccccCCCCCCEEEccc
Q 007339 424 ENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSF 457 (607)
Q Consensus 424 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 457 (607)
.+|+.+.+ .++++.++...|.+|++|+.+.+.+
T Consensus 248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES
T ss_pred CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC
Confidence 44555555 2334445445555555555555544
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=3e-08 Score=99.23 Aligned_cols=94 Identities=19% Similarity=0.130 Sum_probs=81.5
Q ss_pred cccchhhhcCCCCceEEEccC-CCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhc
Q 007339 344 RRIPECFFVHMNGLKVLNLSH-TDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECM 420 (607)
Q Consensus 344 ~~~~~~~~~~l~~L~~L~l~~-~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~ 420 (607)
..+|. +..+++|+.|+|++ |.++.+| ..|..+++|++|+|++|.+....| .|.++++|++|+|++|+|+.+|+.+
T Consensus 22 ~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 22 DSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp TTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 34787 78899999999996 9999887 479999999999999999888777 7899999999999999999998765
Q ss_pred cCCCCCCeeeccCCcCCcC
Q 007339 421 EMLENLSHLYLSSLQLKKF 439 (607)
Q Consensus 421 ~~l~~L~~L~l~~~~l~~~ 439 (607)
.....|+.|+|.+|.+...
T Consensus 100 ~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 100 VQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp TCSCCCCEEECCSSCCCCC
T ss_pred cccCCceEEEeeCCCccCC
Confidence 5444599999999987643
No 163
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=3.7e-08 Score=97.67 Aligned_cols=163 Identities=11% Similarity=0.120 Sum_probs=96.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.+.|+|++|+|||++|+.+++..... ..-...+.++++.......+. .....+..... +..
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~ 108 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGINVIR-EKVKEFARTKP---------------IGG 108 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHHHTTH-HHHHHHHHSCC---------------GGG
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCchHHHH-HHHHHHHhhCC---------------cCC
Confidence 3458999999999999999999886321 100114444433211111111 11111110000 002
Q ss_pred CCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchhhh-hhc--ccceeecccCCHHHHHHHhHhhhCCCCCC
Q 007339 85 KEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYRVC-RSM--KCKQVAVELLSKQEAFNLFIDGVGSSILQ 159 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~~~-~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 159 (607)
+++.++|+|+++... ....+...+.....++++|+||....-. ... ....+++.+++.++..+++.+.+......
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 188 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE 188 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 568899999998763 2333433333334567888888754321 111 12238999999999999999887554322
Q ss_pred CccchHHHHHHHHHHcCCchHHHHHHHH
Q 007339 160 VPILNKEIINEVVEECGCLPLAIVTVAA 187 (607)
Q Consensus 160 ~~~~~~~~~~~i~~~~~g~PLal~~~a~ 187 (607)
- .++..+.+++.++|.|..+.....
T Consensus 189 ~---~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 189 L---TEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp E---CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred C---CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2 567889999999999986554433
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.60 E-value=2.3e-07 Score=91.48 Aligned_cols=159 Identities=9% Similarity=0.170 Sum_probs=96.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFN-DVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
+.+.|+|++|+|||++|+.+++.... ..+. .++.++++.......+... ...+..... +..
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------~~~ 100 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFG--ENWRDNFIEMNASDERGIDVVRHK-IKEFARTAP---------------IGG 100 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHT--TCHHHHCEEEETTSTTCTTTSSHH-HHHHHHSCC---------------SSS
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcC--CcccCCeEEEeCccccChHHHHHH-HHHHHhcCC---------------CCC
Confidence 34899999999999999999988631 1111 1344554432111111110 011100000 002
Q ss_pred CCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchh-hhhhc--ccceeecccCCHHHHHHHhHhhhCCCCCC
Q 007339 85 KEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYR-VCRSM--KCKQVAVELLSKQEAFNLFIDGVGSSILQ 159 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~-~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 159 (607)
+++.++|+|+++... ..+.+...+.....+.++|+||.... +.... ....+++.+++.++..+++.+++......
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 180 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK 180 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 568999999998763 23445444444445677887776543 11111 22248999999999999999887554333
Q ss_pred CccchHHHHHHHHHHcCCchHHHHHH
Q 007339 160 VPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 160 ~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
- .++.++.+++.++|.+..+...
T Consensus 181 i---~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 181 I---TEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp B---CHHHHHHHHHTTTTCHHHHHHH
T ss_pred C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 3 5678899999999998765443
No 165
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.55 E-value=4.8e-08 Score=92.12 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=92.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.+.|+|++|+|||++|+.++...... ...+.|+++...... + . ...+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~------~--------------~----~~~~~-- 101 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI------S--------------T----ALLEG-- 101 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS------C--------------G----GGGTT--
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH------H--------------H----HHHHh--
Confidence 45789999999999999999999987532 224777776442110 0 0 00011
Q ss_pred cCCcEEEEEecCCCccc----ccccccCCCCC-CCC-cEEEEEeCchh---------hhhhccc-ceeecccCCHHHHHH
Q 007339 84 AKEKFVLILDDMWEAFP----LQEIGIPEPSE-ENG-CKLVITTRLYR---------VCRSMKC-KQVAVELLSKQEAFN 147 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~----~~~l~~~~~~~-~~~-~~IliTtR~~~---------~~~~~~~-~~~~l~~L~~~ea~~ 147 (607)
-.+..++|+||++.... .+.+...+... ..+ .++|+||+... +..++.. ..+++++++.++..+
T Consensus 102 ~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~ 181 (242)
T 3bos_A 102 LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLA 181 (242)
T ss_dssp GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHH
T ss_pred ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHH
Confidence 13457899999987632 12222211100 112 24777776322 1111211 338999999999999
Q ss_pred HhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 007339 148 LFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVA 186 (607)
Q Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a 186 (607)
++.+.+......- .++..+.+++.++|.+..+..+.
T Consensus 182 ~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 182 ALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 9998875332222 56788899999999887665443
No 166
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.55 E-value=9.4e-07 Score=84.86 Aligned_cols=175 Identities=11% Similarity=0.120 Sum_probs=93.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.+.|+|++|+|||++|+.+++... . . .+.+++.... ++. ...........+.....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~---~--~-~~~i~~~~~~------------~g~---~~~~~~~~~~~~~~~~~ 121 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN---F--P-FIKICSPDKM------------IGF---SETAKCQAMKKIFDDAY 121 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT---C--S-EEEEECGGGC------------TTC---CHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC---C--C-EEEEeCHHHh------------cCC---chHHHHHHHHHHHHHHH
Confidence 456799999999999999999999853 1 1 2333332210 000 00001112223333333
Q ss_pred cCCcEEEEEecCCCccc------------ccccccCCC---CCCCCcEEEEEeCchhhhhh---c-ccce-eecccCCH-
Q 007339 84 AKEKFVLILDDMWEAFP------------LQEIGIPEP---SEENGCKLVITTRLYRVCRS---M-KCKQ-VAVELLSK- 142 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~------------~~~l~~~~~---~~~~~~~IliTtR~~~~~~~---~-~~~~-~~l~~L~~- 142 (607)
..+..+|+||+++.... .+.+...+. ..+....||.||........ . .... +.+++++.
T Consensus 122 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r 201 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATG 201 (272)
T ss_dssp TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHH
Confidence 46789999999876410 111111111 12334456777776543322 1 1122 78888887
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCC------chHHHHHHHHhhcCCccHHHHHHHHHHHHhc
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGC------LPLAIVTVAASMSGEEEIYEWQNALNELRGR 208 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g------~PLal~~~a~~l~~~~~~~~~~~~l~~l~~~ 208 (607)
++..+++.+.. . ..++....+++.+.| ...++.++-.... ......+.++++.+...
T Consensus 202 ~~i~~i~~~~~-~-------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 202 EQLLEALELLG-N-------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHHHHHHHHT-C-------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-C-------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hchHHHHHHHHHHHHHc
Confidence 56666555432 1 145678889999887 4444444433322 23345566666665443
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.53 E-value=4e-07 Score=91.97 Aligned_cols=171 Identities=12% Similarity=0.109 Sum_probs=96.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCC----CCCcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSL----PENEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~ 80 (607)
.+.+.|+|++|+|||++|+.++...... .... ...+.. ...+..+...-.... .......+....+.+
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~-~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCE-TGIT---ATPCGV----CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLD 109 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCT-TCSC---SSCCSS----SHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC-CCCC---CCCCcc----cHHHHHHhccCCCceEEecccccCCHHHHHHHHH
Confidence 3568999999999999999999887432 1110 000110 111111111000000 000111223444444
Q ss_pred HHh----cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchh-hhhhc--ccceeecccCCHHHHHHHhHh
Q 007339 81 MLK----AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYR-VCRSM--KCKQVAVELLSKQEAFNLFID 151 (607)
Q Consensus 81 ~~~----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~-~~~~~--~~~~~~l~~L~~~ea~~L~~~ 151 (607)
.+. .+++.++|+|+++... ..+.+...+........+|++|.... +.... ....+++.+++.++..+++.+
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~ 189 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH 189 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred HHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHH
Confidence 432 3467899999998763 23334333333334566777766332 21111 223389999999999999988
Q ss_pred hhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 007339 152 GVGSSILQVPILNKEIINEVVEECGCLPLAIVTVA 186 (607)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a 186 (607)
++....... .++.++.+++.++|.|..+....
T Consensus 190 ~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 190 ILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 774332222 56778899999999998776554
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.44 E-value=3.9e-07 Score=93.65 Aligned_cols=161 Identities=14% Similarity=0.180 Sum_probs=97.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.+.|+|++|+|||+||+.+++........ ..++++++.. +...+...+... ....+...+ .
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~~~------~~~~~~~~~~~~---------~~~~~~~~~-~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITSEK------FLNDLVDSMKEG---------KLNEFREKY-R 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEHHH------HHHHHHHHHHTT---------CHHHHHHHH-T
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHH------HHHHHHHHHHcc---------cHHHHHHHh-c
Confidence 4679999999999999999999887432111 1266666433 334444444321 112233333 2
Q ss_pred CCcEEEEEecCCCccc----ccccccCCCC-CCCCcEEEEEeCchh---------hhhhcccce-eecccCCHHHHHHHh
Q 007339 85 KEKFVLILDDMWEAFP----LQEIGIPEPS-EENGCKLVITTRLYR---------VCRSMKCKQ-VAVELLSKQEAFNLF 149 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----~~~l~~~~~~-~~~~~~IliTtR~~~---------~~~~~~~~~-~~l~~L~~~ea~~L~ 149 (607)
.+..+|+||+++.... .+.+...+.. ...+..||+||.... +..++.... +.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 2577999999976642 2222222211 134567888887522 222333223 889999999999999
Q ss_pred HhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 150 IDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
.+.+......- .++.++.|++.++|.+..+..+
T Consensus 273 ~~~~~~~~~~i---~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 273 RKMLEIEHGEL---PEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHTCCC---CTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhcCCCHHHHHHH
Confidence 88774322111 3456788899999988655443
No 169
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.39 E-value=3e-06 Score=83.89 Aligned_cols=153 Identities=10% Similarity=0.091 Sum_probs=91.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC-------------------CCCeEEEEEeC---CCCCHHHHHHHHHHHHc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN-------------------KFNDVIWVTVS---QPLDLFKLQTEIATALK 62 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~-------------------~f~~~~wv~~~---~~~~~~~~~~~i~~~l~ 62 (607)
.+.+.++|+.|+|||++|+.++........ +++ +.++... ....++++ +.+.+.+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~~~~i~~i-r~l~~~~~ 101 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKNTLGVDAV-REVTEKLN 101 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCSSBCHHHH-HHHHHHTT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCCCCCHHHH-HHHHHHHh
Confidence 456899999999999999999987642211 122 3333322 11111111 12222221
Q ss_pred cCCCCCcccccchHHHHHHHhcCCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCchh-hhhhc--ccceeec
Q 007339 63 QSLPENEDKVRRPGRLLGMLKAKEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLYR-VCRSM--KCKQVAV 137 (607)
Q Consensus 63 ~~~~~~~~~~~~~~~l~~~~~~~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~~-~~~~~--~~~~~~l 137 (607)
... ..+++.++|+|+++.+.. ...+...+..-...+.+|++|.+.. +.... ++..+++
T Consensus 102 ~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~ 164 (334)
T 1a5t_A 102 EHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYL 164 (334)
T ss_dssp SCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred hcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeC
Confidence 110 025688999999998732 3334333333234566666665432 33222 2233899
Q ss_pred ccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 007339 138 ELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVT 184 (607)
Q Consensus 138 ~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 184 (607)
.+++.++..+.+.+++.. .++.++.+++.++|.|..+..
T Consensus 165 ~~~~~~~~~~~L~~~~~~--------~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 165 APPPEQYAVTWLSREVTM--------SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp CCCCHHHHHHHHHHHCCC--------CHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999887611 456778899999999976543
No 170
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.37 E-value=7.5e-06 Score=80.39 Aligned_cols=159 Identities=11% Similarity=0.159 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.|+|++|+|||++|+.++..... . ..+.++.+.-.. ... .........+......
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~--~---~~~~i~~~~l~~--------------~~~--g~~~~~~~~lf~~a~~ 103 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANN--S---TFFSISSSDLVS--------------KWL--GESEKLVKNLFQLARE 103 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTS--C---EEEEEECCSSCC--------------SSC--CSCHHHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCC--C---cEEEEEhHHHHh--------------hhh--hHHHHHHHHHHHHHHh
Confidence 367999999999999999999998621 1 244455443211 000 1112233444444445
Q ss_pred CCcEEEEEecCCCccc-------------ccccccCCC---CCCCCcEEEEEeCchhhhhh---cccce-eecccCCHHH
Q 007339 85 KEKFVLILDDMWEAFP-------------LQEIGIPEP---SEENGCKLVITTRLYRVCRS---MKCKQ-VAVELLSKQE 144 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~-------------~~~l~~~~~---~~~~~~~IliTtR~~~~~~~---~~~~~-~~l~~L~~~e 144 (607)
.++.+|+||+++.... ...+...+. ....+..||.||........ -+... +.++..+.++
T Consensus 104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 104 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHA 183 (322)
T ss_dssp TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHH
T ss_pred cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHH
Confidence 6789999999986621 011111111 11234455556653322110 12322 7788888999
Q ss_pred HHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHHHH
Q 007339 145 AFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTVAA 187 (607)
Q Consensus 145 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~a~ 187 (607)
..+++..++....... .+...+.|++.+.|+ +-.|..+..
T Consensus 184 r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 184 RAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 9999988886543322 457788999999887 544555443
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.36 E-value=2e-06 Score=88.12 Aligned_cols=155 Identities=14% Similarity=0.111 Sum_probs=89.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.+.|+|++|+|||++|+.+++.... . ...+++.. ....++ +.+.... .....
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~~~---~---f~~l~a~~-~~~~~i-r~~~~~a-----------------~~~~~ 103 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYANA---D---VERISAVT-SGVKEI-REAIERA-----------------RQNRN 103 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHTTC---E---EEEEETTT-CCHHHH-HHHHHHH-----------------HHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHhCC---C---eEEEEecc-CCHHHH-HHHHHHH-----------------HHhhh
Confidence 3457999999999999999999998641 1 22333222 122222 1111111 11111
Q ss_pred cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEE-EeCchhh--hhh--cccceeecccCCHHHHHHHhHhhhCCC
Q 007339 84 AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVI-TTRLYRV--CRS--MKCKQVAVELLSKQEAFNLFIDGVGSS 156 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~Ili-TtR~~~~--~~~--~~~~~~~l~~L~~~ea~~L~~~~~~~~ 156 (607)
.+++.+|+||+++... ..+.+...+.. + ...+|. ||.+... ... .....+.+++++.++..+++.+.+...
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK 181 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHH
Confidence 4678999999998773 33444444332 2 233443 4444321 111 122237899999999999999887542
Q ss_pred C----CCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 157 I----LQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 157 ~----~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
. .......++..+.+++.++|.+..+..+
T Consensus 182 ~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 182 TRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 1 0112236788899999999988655444
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.36 E-value=1.2e-06 Score=87.40 Aligned_cols=132 Identities=20% Similarity=0.147 Sum_probs=81.5
Q ss_pred cCCCCceEEEccCCCCc----------cCCccccCCccCcEeecccccCCCCCCcccCCCCCCEEeccCCchh-hhHHhc
Q 007339 352 VHMNGLKVLNLSHTDIE----------VLPSSISDLTNLRSLLLRWCGRLKRVPSLAKLLALQYLDLEGTWIE-EVLECM 420 (607)
Q Consensus 352 ~~l~~L~~L~l~~~~~~----------~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~ 420 (607)
..+++|+.|.+...... .+...+..+++|+.|.+++|.... ++.+ .+++|+.|++..|.+. .....+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGKK-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCSC-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-eccc-cCCCCcEEEEecCCCChHHHHHH
Confidence 35678888877654321 233345667889999998774332 2333 3788999999988776 222333
Q ss_pred c--CCCCCCeeeccC--Cc------CCcCCCccc-cCCCCCCEEEcccCcchhhhhHHHh---hcccccccEEEeeecCc
Q 007339 421 E--MLENLSHLYLSS--LQ------LKKFPTGIL-PRLRNLYKLKLSFGNEALRETVEEA---ASLSDGLDYFEGCFSKL 486 (607)
Q Consensus 421 ~--~l~~L~~L~l~~--~~------l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~~L~~L~l~~~~~ 486 (607)
. .+++|++|+|+. +. +..+.+... ..+++|+.|+|.+|....... ..+ ..++ +|++|+++.|.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~-~~la~a~~~~-~L~~LdLs~n~L 291 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV-EMFLESDILP-QLETMDISAGVL 291 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH-HHHHHCSSGG-GCSEEECCSSCC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH-HHHHhCccCC-CCCEEECCCCCC
Confidence 3 789999998853 21 111111111 357889999998776543222 222 3577 899999887765
Q ss_pred c
Q 007339 487 K 487 (607)
Q Consensus 487 ~ 487 (607)
.
T Consensus 292 ~ 292 (362)
T 2ra8_A 292 T 292 (362)
T ss_dssp B
T ss_pred C
Confidence 4
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.36 E-value=1.5e-06 Score=86.96 Aligned_cols=171 Identities=9% Similarity=0.105 Sum_probs=96.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|++|+|||++|+.++.........-..+..++++.......+.. ....+.......... . .......+
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~---~~~~~~~~ 132 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE-KVKNFARLTVSKPSK--H---DLENYPCP 132 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT-HHHHHHHSCCCCCCT--T---HHHHSCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH-HHHHHhhhcccccch--h---hcccCCCC
Confidence 34899999999999999999988532100111245555554333333322 222222111110000 0 00111124
Q ss_pred CcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCchh-hhhhc--ccceeecccCCHHHHHHHhHhhhCCCCCCC
Q 007339 86 EKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLYR-VCRSM--KCKQVAVELLSKQEAFNLFIDGVGSSILQV 160 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~~-~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 160 (607)
+..++++|+++.... ...+...+.......++|++|.... +.... +...+++.+++.++..+.+.+++......-
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i 212 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKC 212 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCC
Confidence 568999999987632 2233322222234556777665332 21111 122388999999999999998875543222
Q ss_pred ccchHHHHHHHHHHcCCchHHHHHH
Q 007339 161 PILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 161 ~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
.++..+.|++.++|.|..+...
T Consensus 213 ---~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 213 ---DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ---CHHHHHHHHHHTSSCHHHHHHH
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHH
Confidence 5688999999999998764443
No 174
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.35 E-value=3.5e-06 Score=80.33 Aligned_cols=157 Identities=14% Similarity=0.121 Sum_probs=86.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.|.|+|++|+|||++|+.++..... ..+.+++....+. .. .........+......
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~------~~~~~~~~~~~~~---------------~~-~~~~~~~~~~~~~a~~ 96 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQV------PFLAMAGAEFVEV---------------IG-GLGAARVRSLFKEARA 96 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC------CEEEEETTTTSSS---------------ST-THHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC------CEEEechHHHHhh---------------cc-ChhHHHHHHHHHHHHh
Confidence 456889999999999999999998642 1455555442110 00 0111122333444444
Q ss_pred CCcEEEEEecCCCccc-----------------ccccccCCCC--CCCCcEEEEEeCchhhhh--hc---ccce-eeccc
Q 007339 85 KEKFVLILDDMWEAFP-----------------LQEIGIPEPS--EENGCKLVITTRLYRVCR--SM---KCKQ-VAVEL 139 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~-----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~--~~---~~~~-~~l~~ 139 (607)
..+.+|+||+++.... +..+...+.. ...+..||.||....... .. .... +.++.
T Consensus 97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~ 176 (262)
T 2qz4_A 97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL 176 (262)
T ss_dssp TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence 5679999999987511 1111111111 123456666776443211 11 2222 78889
Q ss_pred CCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH-HHHHH
Q 007339 140 LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL-AIVTV 185 (607)
Q Consensus 140 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 185 (607)
.+.++..+++..++....... ........+++.+.|++- .|..+
T Consensus 177 p~~~~r~~il~~~~~~~~~~~--~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKLTQ--SSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCCB--THHHHHHHHHHTCTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCc--chhhHHHHHHHHCCCCCHHHHHHH
Confidence 999999999988774432222 123345788888888753 44444
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.32 E-value=1.7e-06 Score=83.70 Aligned_cols=156 Identities=12% Similarity=0.117 Sum_probs=88.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.+.|+|++|+|||++|+.++..... ..+.+.+..-.. .. ..........+.....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~------~~~~v~~~~~~~--------------~~--~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNA------TFIRVVGSELVK--------------KF--IGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTC------EEEEEEGGGGCC--------------CS--TTHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehHHHHH--------------hc--cchHHHHHHHHHHHHH
Confidence 3456899999999999999999998642 244444322111 00 0111122333344444
Q ss_pred cCCcEEEEEecCCCcc----------------cccccccCCC--CCCCCcEEEEEeCchhhhh-----hcccc-eeeccc
Q 007339 84 AKEKFVLILDDMWEAF----------------PLQEIGIPEP--SEENGCKLVITTRLYRVCR-----SMKCK-QVAVEL 139 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~----------------~~~~l~~~~~--~~~~~~~IliTtR~~~~~~-----~~~~~-~~~l~~ 139 (607)
...+.+|+||+++... .+..+...+. ....+..||.||....... ..... .+.++.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 5667899999997641 0111111111 1223566777777443322 11222 288999
Q ss_pred CCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHH
Q 007339 140 LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTV 185 (607)
Q Consensus 140 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 185 (607)
.+.++..+++...+....... ......+++.+.|. |-.|..+
T Consensus 188 p~~~~r~~il~~~~~~~~~~~----~~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNLAE----DVNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCBCT----TCCHHHHHHHCTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCC----cCCHHHHHHHcCCCCHHHHHHH
Confidence 999999999998876542221 22356777777774 5444443
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=1.6e-06 Score=91.24 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHH-Hh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGM-LK 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-~~ 83 (607)
.+.+.|+|++|+|||++|+.+++... + .++.++++.......+ ...+...... ...........+. ..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~-----~-~~i~in~s~~~~~~~~-~~~i~~~~~~----~~~~~~~~~~~~~~~~ 145 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG-----Y-DILEQNASDVRSKTLL-NAGVKNALDN----MSVVGYFKHNEEAQNL 145 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT-----C-EEEEECTTSCCCHHHH-HHTGGGGTTB----CCSTTTTTC----CCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-----C-CEEEEeCCCcchHHHH-HHHHHHHhcc----ccHHHHHhhhhhhhhc
Confidence 47899999999999999999999863 2 2566666655443322 2211111110 0000000000000 01
Q ss_pred cCCcEEEEEecCCCcccc-----cccccCCCCCCCCcEEEEEeCchh---hhhhcc-cceeecccCCHHHHHHHhHhhhC
Q 007339 84 AKEKFVLILDDMWEAFPL-----QEIGIPEPSEENGCKLVITTRLYR---VCRSMK-CKQVAVELLSKQEAFNLFIDGVG 154 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~~-----~~l~~~~~~~~~~~~IliTtR~~~---~~~~~~-~~~~~l~~L~~~ea~~L~~~~~~ 154 (607)
.+++.+||||+++....- ..+...+.. .+..||+++.... +..... ...+++++++.++..+.+.+.+.
T Consensus 146 ~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 146 NGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp STTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence 367899999999876331 222222221 1233555554322 112111 22389999999999999988774
Q ss_pred CCCCCCccchHHHHHHHHHHcCCc-hHHHHHH
Q 007339 155 SSILQVPILNKEIINEVVEECGCL-PLAIVTV 185 (607)
Q Consensus 155 ~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 185 (607)
.....- .++.++.|++.++|. +-++..+
T Consensus 224 ~~~~~i---~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 224 REKFKL---DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HHTCCC---CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCCCC---CHHHHHHHHHHcCCcHHHHHHHH
Confidence 432222 345688999999995 4555554
No 177
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.30 E-value=2e-06 Score=84.95 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.+.|+|++|+|||+||+.+++..... . ..++++++. ++...+...+... ........+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~--~-~~~~~i~~~------~~~~~~~~~~~~~---------~~~~~~~~~-- 96 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR--G-YRVIYSSAD------DFAQAMVEHLKKG---------TINEFRNMY-- 96 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT--T-CCEEEEEHH------HHHHHHHHHHHHT---------CHHHHHHHH--
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC--C-CEEEEEEHH------HHHHHHHHHHHcC---------cHHHHHHHh--
Confidence 4678999999999999999999987432 1 126667643 2333343333221 112222322
Q ss_pred CCcEEEEEecCCCccc----ccccccCCCC-CCCCcEEEEEeCchh---------hhhhcccce-eecccCCHHHHHHHh
Q 007339 85 KEKFVLILDDMWEAFP----LQEIGIPEPS-EENGCKLVITTRLYR---------VCRSMKCKQ-VAVELLSKQEAFNLF 149 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----~~~l~~~~~~-~~~~~~IliTtR~~~---------~~~~~~~~~-~~l~~L~~~ea~~L~ 149 (607)
.+..+|+||+++.... .+.+...+.. ...+..||+||.... +..++.... +++++ +.++..+++
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 2367999999987642 1222222110 123557888876332 222333323 88999 999999999
Q ss_pred HhhhCCCCCCCccchHHHHHHHHHHcCCchHHH
Q 007339 150 IDGVGSSILQVPILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal 182 (607)
.+.+......- .++..+.|++.+ |..-.+
T Consensus 176 ~~~~~~~~~~l---~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 176 KEKLKEFNLEL---RKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHTTCCC---CHHHHHHHHHHC-SSHHHH
T ss_pred HHHHHhcCCCC---CHHHHHHHHHhC-CCHHHH
Confidence 98875432222 567788899999 776543
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.30 E-value=4.8e-06 Score=83.15 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=91.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
..+.|.|+|++|+|||++|+.++..... ..+.++++..... .. .........+.....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~------~~~~i~~~~l~~~--------------~~--g~~~~~~~~~~~~a~ 173 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGA------TFFSISASSLTSK--------------WV--GEGEKMVRALFAVAR 173 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTC------EEEEEEGGGGCCS--------------ST--THHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCC------eEEEEehHHhhcc--------------cc--chHHHHHHHHHHHHH
Confidence 3567999999999999999999988631 2456665432110 00 011112233333333
Q ss_pred cCCcEEEEEecCCCccc-------------ccccccCCC----CCCCCcEEEEEeCchhhhh-h--cccce-eecccCCH
Q 007339 84 AKEKFVLILDDMWEAFP-------------LQEIGIPEP----SEENGCKLVITTRLYRVCR-S--MKCKQ-VAVELLSK 142 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~-------------~~~l~~~~~----~~~~~~~IliTtR~~~~~~-~--~~~~~-~~l~~L~~ 142 (607)
..++.+|+||+++.... ..++...+. ....+..||.||....... . -+... +.+...+.
T Consensus 174 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~ 253 (357)
T 3d8b_A 174 CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEA 253 (357)
T ss_dssp HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCH
T ss_pred hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCH
Confidence 46789999999965411 112221111 1123445665665432211 1 12222 77888889
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHHHH
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTVAA 187 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~a~ 187 (607)
++..+++...+......- .++..+.|++.+.|+ +-.|..+..
T Consensus 254 ~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 254 SARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999888775432222 467888999999885 555555543
No 179
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.28 E-value=2e-06 Score=85.70 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=42.4
Q ss_pred hHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhh--cccccccEEEeee
Q 007339 416 VLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAA--SLSDGLDYFEGCF 483 (607)
Q Consensus 416 l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~~L~~L~l~~ 483 (607)
+...+..+++|+.|+|++|.-..+++ + .+++|+.|++..|... ...+..+. .+| +|+.|+|+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~-~~~l~~l~~~~lp-~L~~L~L~~ 228 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLP-DSVVEDILGSDLP-NLEKLVLYV 228 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCC-HHHHHHHHHSBCT-TCCEEEEEC
T ss_pred HHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCC-hHHHHHHHHccCC-CCcEEEEec
Confidence 44556677888888888774223433 2 3788999999876643 33444554 678 999998864
No 180
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.26 E-value=4.7e-06 Score=82.00 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=92.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.|+|++|+|||++|+.+++.... ..+.++++. + . ... ..........+......
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~------~~~~v~~~~------l----~----~~~--~g~~~~~~~~~f~~a~~ 108 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSSD------L----V----SKW--MGESEKLVKQLFAMARE 108 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTC------EEEEEEHHH------H----H----TTT--GGGHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCC------CEEEEchHH------H----h----hcc--cchHHHHHHHHHHHHHh
Confidence 356899999999999999999998641 134444321 1 0 000 01112233344444445
Q ss_pred CCcEEEEEecCCCccc-------------ccccccCCC---CCCCCcEEEEEeCchhhhhh---cccce-eecccCCHHH
Q 007339 85 KEKFVLILDDMWEAFP-------------LQEIGIPEP---SEENGCKLVITTRLYRVCRS---MKCKQ-VAVELLSKQE 144 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~-------------~~~l~~~~~---~~~~~~~IliTtR~~~~~~~---~~~~~-~~l~~L~~~e 144 (607)
.++.+|+||+++.... ...+...+. ....+..||.||........ -.... +.++..+.++
T Consensus 109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~ 188 (322)
T 3eie_A 109 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAA 188 (322)
T ss_dssp TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHH
T ss_pred cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHH
Confidence 6778999999986522 111211111 12335556667764332210 12222 7788889999
Q ss_pred HHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHHH
Q 007339 145 AFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTVA 186 (607)
Q Consensus 145 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~a 186 (607)
..+++..++....... .++..+.|++.+.|. +-.|..+.
T Consensus 189 r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 189 RTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999999887653332 456788899999875 55555443
No 181
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.25 E-value=6.3e-06 Score=81.85 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=88.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh-
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK- 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~- 83 (607)
.+.|.|+|++|+|||++|+.++..... . .+.+++........+. ..+.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~---~---~~~~~~~~~~~~~~~~-------------------------~~~~~ 103 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSA---N---IKTTAAPMIEKSGDLA-------------------------AILTN 103 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTC---C---EEEEEGGGCCSHHHHH-------------------------HHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC---C---eEEecchhccchhHHH-------------------------HHHHh
Confidence 356899999999999999999888642 1 3445543322211111 1111
Q ss_pred cCCcEEEEEecCCCccc--ccccccCCC------------------CCCCCcEEEEEeCchhhhh---hccc-ceeeccc
Q 007339 84 AKEKFVLILDDMWEAFP--LQEIGIPEP------------------SEENGCKLVITTRLYRVCR---SMKC-KQVAVEL 139 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~~--~~~l~~~~~------------------~~~~~~~IliTtR~~~~~~---~~~~-~~~~l~~ 139 (607)
..+..+|+||+++.... ...+...+. ...+...+|.+|....... .-.. ..+.+.+
T Consensus 104 ~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~ 183 (338)
T 3pfi_A 104 LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEF 183 (338)
T ss_dssp CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCC
T ss_pred ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCC
Confidence 24567899999987621 111111100 0011345666666432211 1122 2389999
Q ss_pred CCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHHHH
Q 007339 140 LSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVTVA 186 (607)
Q Consensus 140 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~a 186 (607)
++.++..+++.+.+...... ..++..+.+++.+.|.|-.+..+.
T Consensus 184 ~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 184 YKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999998887543222 256788899999999996555443
No 182
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.22 E-value=2.1e-06 Score=84.10 Aligned_cols=148 Identities=13% Similarity=0.115 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFN-DVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
...+.|+|++|+|||++|+.+++.......... .++.++...- ....... .......+...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l--------------~~~~~g~--~~~~~~~~~~~-- 128 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL--------------VGQYIGH--TAPKTKEVLKR-- 128 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT--------------CCSSTTC--HHHHHHHHHHH--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh--------------hhhcccc--cHHHHHHHHHh--
Confidence 446899999999999999999888753211111 2444442221 0000000 00111222222
Q ss_pred cCCcEEEEEecCCCcc-----------cccccccCCCCCCCCcEEEEEeCchhh----------hhhcccceeecccCCH
Q 007339 84 AKEKFVLILDDMWEAF-----------PLQEIGIPEPSEENGCKLVITTRLYRV----------CRSMKCKQVAVELLSK 142 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~~~IliTtR~~~~----------~~~~~~~~~~l~~L~~ 142 (607)
.+..+|+||+++... ....+...+.....+..||.||..... ..++. ..+.+++++.
T Consensus 129 -~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~ 206 (309)
T 3syl_A 129 -AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYSD 206 (309)
T ss_dssp -HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCCH
T ss_pred -cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCH
Confidence 234699999998551 122333333333456678888864322 12211 2389999999
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHc
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEEC 175 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~ 175 (607)
++..+++.+++......- .++..+.+++.+
T Consensus 207 ~~~~~il~~~l~~~~~~~---~~~~~~~l~~~~ 236 (309)
T 3syl_A 207 EELFEIAGHMLDDQNYQM---TPEAETALRAYI 236 (309)
T ss_dssp HHHHHHHHHHHHHTTCEE---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Confidence 999999988775432222 345555555543
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.21 E-value=7.7e-06 Score=81.50 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=90.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+-|.|+|++|+|||++|+.++..... ..+.+++. ++. .... .........+.......
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~------~~~~v~~~------~l~--------~~~~--g~~~~~~~~~f~~a~~~ 142 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANS------TFFSVSSS------DLV--------SKWM--GESEKLVKQLFAMAREN 142 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTC------EEEEEEHH------HHH--------SCC-----CHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCC------CEEEeeHH------HHh--------hhhc--chHHHHHHHHHHHHHHc
Confidence 45899999999999999999998741 13444432 111 1000 11112233444444456
Q ss_pred CcEEEEEecCCCccc-------------ccccccCCC---CCCCCcEEEEEeCchhhhh---hcccce-eecccCCHHHH
Q 007339 86 EKFVLILDDMWEAFP-------------LQEIGIPEP---SEENGCKLVITTRLYRVCR---SMKCKQ-VAVELLSKQEA 145 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~-------------~~~l~~~~~---~~~~~~~IliTtR~~~~~~---~~~~~~-~~l~~L~~~ea 145 (607)
++.+|+||+++.... ...+...+. ....+..||.||....... .-+... +.+...+.++.
T Consensus 143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r 222 (355)
T 2qp9_X 143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAAR 222 (355)
T ss_dssp SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHH
T ss_pred CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHH
Confidence 789999999986531 112211111 1123455665666432111 112323 77888899999
Q ss_pred HHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHHH
Q 007339 146 FNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTVA 186 (607)
Q Consensus 146 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~a 186 (607)
.+++..++....... .+...+.|++.+.|. +-.|..+.
T Consensus 223 ~~il~~~l~~~~~~~---~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 223 TTMFEINVGDTPSVL---TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999998886653222 456788999999885 54555443
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.19 E-value=1.5e-05 Score=80.76 Aligned_cols=157 Identities=10% Similarity=0.084 Sum_probs=89.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.|+|++|+|||++|+.++..... .++.+++...... . . .........+......
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~------~~~~v~~~~l~~~--~-------~-------g~~~~~~~~~~~~a~~ 205 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNA------TFFNISAASLTSK--Y-------V-------GEGEKLVRALFAVARE 205 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTC------EEEEECSCCC-----------------------CHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcC------cEEEeeHHHhhcc--c-------c-------chHHHHHHHHHHHHHh
Confidence 467999999999999999999988531 2455554432210 0 0 0011122333444434
Q ss_pred CCcEEEEEecCCCccc-------------ccccccCCC----CCCCCcEEEEEeCchhhhh---hcccce-eecccCCHH
Q 007339 85 KEKFVLILDDMWEAFP-------------LQEIGIPEP----SEENGCKLVITTRLYRVCR---SMKCKQ-VAVELLSKQ 143 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~-------------~~~l~~~~~----~~~~~~~IliTtR~~~~~~---~~~~~~-~~l~~L~~~ 143 (607)
....+|+||+++.... ...+...+. .......||.||....... ..+... +.+...+.+
T Consensus 206 ~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~ 285 (389)
T 3vfd_A 206 LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEE 285 (389)
T ss_dssp SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHH
T ss_pred cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHH
Confidence 5668999999976511 001111111 0123345665665422211 112322 778889999
Q ss_pred HHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH-HHHHHH
Q 007339 144 EAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL-AIVTVA 186 (607)
Q Consensus 144 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~a 186 (607)
+..+++...+......- .++....+++.+.|..- +|..+.
T Consensus 286 ~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 286 TRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999988886653333 55678899999988644 554443
No 185
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.19 E-value=5.7e-06 Score=83.24 Aligned_cols=47 Identities=4% Similarity=-0.038 Sum_probs=35.8
Q ss_pred eecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcC-CchHHHHH
Q 007339 135 VAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECG-CLPLAIVT 184 (607)
Q Consensus 135 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~PLal~~ 184 (607)
+.+.+++.++..+++.+++......- .++..+.+++.+. |.|..+..
T Consensus 254 i~~~~~~~~e~~~il~~~~~~~~~~~---~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 254 VSTTPYSEKDTKQILRIRCEEEDVEM---SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp EEECCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHHHSCHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcCCCHHHHHH
Confidence 79999999999999998875433222 5678889999997 77755443
No 186
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.18 E-value=3.3e-05 Score=79.40 Aligned_cols=158 Identities=11% Similarity=0.160 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.|+|++|+|||++|+.++..... . ..+.++++.. ..... .........+......
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~--~---~~~~v~~~~l----------~~~~~------g~~~~~~~~~f~~a~~ 225 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANN--S---TFFSISSSDL----------VSKWL------GESEKLVKNLFQLARE 225 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCS--S---EEEEECCC-------------------------CCCTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC--C---CEEEEeHHHH----------Hhhhc------chHHHHHHHHHHHHHH
Confidence 467999999999999999999998621 1 1333333221 11100 0112234555555555
Q ss_pred CCcEEEEEecCCCccc-------------ccccccCCCC---CCCCcEEEEEeCchhhhh---hcccce-eecccCCHHH
Q 007339 85 KEKFVLILDDMWEAFP-------------LQEIGIPEPS---EENGCKLVITTRLYRVCR---SMKCKQ-VAVELLSKQE 144 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~-------------~~~l~~~~~~---~~~~~~IliTtR~~~~~~---~~~~~~-~~l~~L~~~e 144 (607)
.++.+|+||+++.... ...+...+.. ...+..||.||....... .-+... +.+...+.++
T Consensus 226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA 305 (444)
T ss_dssp SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHH
T ss_pred cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHH
Confidence 6789999999986611 1112222221 134556666776432211 112322 6778888888
Q ss_pred HHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHHH
Q 007339 145 AFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTVA 186 (607)
Q Consensus 145 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~a 186 (607)
..+++..++....... .+.....|++.+.|+ +-.|..+.
T Consensus 306 r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 306 RAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 9999988886543222 456788999999885 54555443
No 187
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.17 E-value=1.5e-06 Score=78.37 Aligned_cols=131 Identities=16% Similarity=0.174 Sum_probs=68.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPN----KFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLL 79 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 79 (607)
..+.+.|+|++|+|||++|+.+++....... ....++++++... ... .............+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~ 107 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL-------------VAG-AKYRGEFEERLKGVL 107 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH-------------HTT-TCSHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH-------------hcc-CCccccHHHHHHHHH
Confidence 3467899999999999999999988743100 1223556554211 000 000001111122233
Q ss_pred HHH-hcCCcEEEEEecCCCccc---------ccccccCCCCCCCCcEEEEEeCchhhhh------h-c-ccceeecccCC
Q 007339 80 GML-KAKEKFVLILDDMWEAFP---------LQEIGIPEPSEENGCKLVITTRLYRVCR------S-M-KCKQVAVELLS 141 (607)
Q Consensus 80 ~~~-~~~~~~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~IliTtR~~~~~~------~-~-~~~~~~l~~L~ 141 (607)
+.+ ..+++.++|||+++.... +..+...+.. .....+|.||....... . . ....+.++.++
T Consensus 108 ~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~ 186 (195)
T 1jbk_A 108 NDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPS 186 (195)
T ss_dssp HHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCC
T ss_pred HHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCC
Confidence 322 246688999999987631 1111111111 22345777776543211 1 1 12237888888
Q ss_pred HHHHHHHh
Q 007339 142 KQEAFNLF 149 (607)
Q Consensus 142 ~~ea~~L~ 149 (607)
.++..+++
T Consensus 187 ~~~~~~il 194 (195)
T 1jbk_A 187 VEDTIAIL 194 (195)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 88877664
No 188
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.16 E-value=3.1e-05 Score=75.21 Aligned_cols=156 Identities=11% Similarity=0.121 Sum_probs=88.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.+.|+|++|+|||++|+.++..... ..+.++++.... ... .........+......
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~------~~~~i~~~~l~~--------------~~~--~~~~~~~~~~~~~~~~ 111 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA------TFLNISAASLTS--------------KYV--GDGEKLVRALFAVARH 111 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC------EEEEEESTTTSS--------------SSC--SCHHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC------CeEEeeHHHHhh--------------ccc--chHHHHHHHHHHHHHH
Confidence 467999999999999999999988631 244555543211 000 0111222333333435
Q ss_pred CCcEEEEEecCCCccccc-------------cccc---CCCC--CCCCcEEEEEeCchhhhhh---cccce-eecccCCH
Q 007339 85 KEKFVLILDDMWEAFPLQ-------------EIGI---PEPS--EENGCKLVITTRLYRVCRS---MKCKQ-VAVELLSK 142 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~~~-------------~l~~---~~~~--~~~~~~IliTtR~~~~~~~---~~~~~-~~l~~L~~ 142 (607)
.++.+|+||+++....-. .+.. ..+. .+.+..||.||........ -.... +.+...+.
T Consensus 112 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~ 191 (297)
T 3b9p_A 112 MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDE 191 (297)
T ss_dssp TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCH
T ss_pred cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCH
Confidence 677899999997652210 1111 1111 1134556667764322110 02222 66777788
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchH-HHHHH
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPL-AIVTV 185 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PL-al~~~ 185 (607)
++..+++...+......- .++..+.+++.+.|.+- ++..+
T Consensus 192 ~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 192 QTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp HHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 888888887765432222 45678889999988875 55444
No 189
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.16 E-value=6.3e-06 Score=81.33 Aligned_cols=151 Identities=11% Similarity=0.142 Sum_probs=85.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+++.+.|++|+|||++|+.+++... ..++.++++.. ....+ ...+......... .
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~~~~i-~~~~~~~~~~~~~----------------~ 103 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-KIDFV-RGPLTNFASAASF----------------D 103 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-CHHHH-HTHHHHHHHBCCC----------------S
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-CHHHH-HHHHHHHHhhccc----------------C
Confidence 35778889999999999999998863 12666665443 22222 2222222111100 2
Q ss_pred CCcEEEEEecCCCcc---cccccccCCCCCCCCcEEEEEeCchhhh-hhc--ccceeecccCCHHHHHHHh-------Hh
Q 007339 85 KEKFVLILDDMWEAF---PLQEIGIPEPSEENGCKLVITTRLYRVC-RSM--KCKQVAVELLSKQEAFNLF-------ID 151 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~IliTtR~~~~~-~~~--~~~~~~l~~L~~~ea~~L~-------~~ 151 (607)
+++.++|+|+++... ..+.+...+.....+.++|+||....-. ... ....+++++.+.+|..+++ .+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~ 183 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTE 183 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999998875 2222322222222356788887754321 111 1223889999988854333 22
Q ss_pred hhCCCCCCCccchH-HHHHHHHHHcCCchHHH
Q 007339 152 GVGSSILQVPILNK-EIINEVVEECGCLPLAI 182 (607)
Q Consensus 152 ~~~~~~~~~~~~~~-~~~~~i~~~~~g~PLal 182 (607)
.+......- .+ +.++.+++.++|.+..+
T Consensus 184 ~~~~~~~~~---~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 184 ICKHEGIAI---ADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHHHHTCCB---SCHHHHHHHHHHTCSCTTHH
T ss_pred HHHHcCCCC---CcHHHHHHHHHhCCCCHHHH
Confidence 222221111 23 78888999998887543
No 190
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=4.7e-06 Score=83.38 Aligned_cols=99 Identities=10% Similarity=0.140 Sum_probs=61.5
Q ss_pred CCcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCchh-hhhhc--ccceeecccCCHHHHHHHhHhhhCCCCCC
Q 007339 85 KEKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRLYR-VCRSM--KCKQVAVELLSKQEAFNLFIDGVGSSILQ 159 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~~~-~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~ 159 (607)
+++.++|+|+++.... ...+...+.....+..+|++|.... +.... +...+++.+++.++..+.+.+.+......
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 4678999999987632 2223222222234566777776432 22211 22338999999999999999887443221
Q ss_pred Cccch-HHHHHHHHHHcCCchHHHHHHH
Q 007339 160 VPILN-KEIINEVVEECGCLPLAIVTVA 186 (607)
Q Consensus 160 ~~~~~-~~~~~~i~~~~~g~PLal~~~a 186 (607)
- . ++.++.|++.++|.+..+....
T Consensus 213 ~---~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 213 L---ETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp E---CCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred C---CcHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 3 5778899999999986554443
No 191
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.11 E-value=1.2e-06 Score=78.61 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=47.9
Q ss_pred hcCCCCceEEEccCC-CCc-----cCCccccCCccCcEeecccccCCCCC----C-cccCCCCCCEEeccCCchhh----
Q 007339 351 FVHMNGLKVLNLSHT-DIE-----VLPSSISDLTNLRSLLLRWCGRLKRV----P-SLAKLLALQYLDLEGTWIEE---- 415 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~----~-~~~~l~~L~~L~l~~~~l~~---- 415 (607)
+...++|+.|++++| .+. .+...+...++|++|+|++|.+.... . .+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 556777888888877 665 23334555566666666666543321 1 23344556666666665542
Q ss_pred -hHHhccCCCCCCeeec--cCCcCC
Q 007339 416 -VLECMEMLENLSHLYL--SSLQLK 437 (607)
Q Consensus 416 -l~~~~~~l~~L~~L~l--~~~~l~ 437 (607)
+...+...++|++|+| ++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHhCCCceEEEecCCCCCCC
Confidence 2334444555555555 445443
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.1e-05 Score=80.16 Aligned_cols=155 Identities=10% Similarity=0.126 Sum_probs=88.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFN-DVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
.+.++|++|+||||+|+.++...... .+. .+..++.+.......+.. ....+...... ..+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~--~~~~~~~~~~~~~~~~~~~ir~-~i~~~~~~~~~---------------~~~ 109 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGK--NYSNMVLELNASDDRGIDVVRN-QIKDFASTRQI---------------FSK 109 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTT--SHHHHEEEECTTSCCSHHHHHT-HHHHHHHBCCS---------------SSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC--CccceEEEEcCcccccHHHHHH-HHHHHHhhccc---------------CCC
Confidence 38999999999999999999886421 111 133344333223332222 22222110000 013
Q ss_pred CcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCchh-hhhhc--ccceeecccCCHHHHHHHhHhhhCCCCCCC
Q 007339 86 EKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLYR-VCRSM--KCKQVAVELLSKQEAFNLFIDGVGSSILQV 160 (607)
Q Consensus 86 ~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~~-~~~~~--~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~ 160 (607)
.+.++|+|+++... ..+.+...+.......++|++|.... +.... ++..+.+.+++.++..+.+.+.+......-
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i 189 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKL 189 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCB
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCC
Confidence 47899999998663 22223222222223456666665332 21111 122378999999999999888774432222
Q ss_pred ccchHHHHHHHHHHcCCchHHH
Q 007339 161 PILNKEIINEVVEECGCLPLAI 182 (607)
Q Consensus 161 ~~~~~~~~~~i~~~~~g~PLal 182 (607)
.++..+.+++.++|.+--+
T Consensus 190 ---~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 190 ---SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ---CHHHHHHHHHHHTTCHHHH
T ss_pred ---CHHHHHHHHHHcCCCHHHH
Confidence 5677889999999988643
No 193
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=1.5e-06 Score=76.00 Aligned_cols=83 Identities=18% Similarity=0.098 Sum_probs=46.6
Q ss_pred CccCcEeecccccCCCCC-CcccCCCCCCEEeccCC-chhh-hHHhccCC----CCCCeeeccCCc-CCcCCCccccCCC
Q 007339 377 LTNLRSLLLRWCGRLKRV-PSLAKLLALQYLDLEGT-WIEE-VLECMEML----ENLSHLYLSSLQ-LKKFPTGILPRLR 448 (607)
Q Consensus 377 l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~-~l~~-l~~~~~~l----~~L~~L~l~~~~-l~~~~~~~~~~l~ 448 (607)
-.+|+.|++++|.++... ..+.++++|++|+|++| .++. --..+..+ ++|++|+|++|. ++......+.+++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 346788888887744322 25667777777777777 3552 22334332 356666666653 5433223344555
Q ss_pred CCCEEEcccCc
Q 007339 449 NLYKLKLSFGN 459 (607)
Q Consensus 449 ~L~~L~l~~~~ 459 (607)
+|+.|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666554
No 194
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=2.9e-06 Score=74.12 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=58.6
Q ss_pred ccchhhhcCCCCceEEEccCCCCccC-CccccCCccCcEeecccccCCCCCC--cccCC----CCCCEEeccCC-chhhh
Q 007339 345 RIPECFFVHMNGLKVLNLSHTDIEVL-PSSISDLTNLRSLLLRWCGRLKRVP--SLAKL----LALQYLDLEGT-WIEEV 416 (607)
Q Consensus 345 ~~~~~~~~~l~~L~~L~l~~~~~~~l-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l----~~L~~L~l~~~-~l~~l 416 (607)
.+|.... .-.+|+.|+++++.++.. -..+..+++|+.|+|++|..+++.. .+..+ ++|++|++++| +++.-
T Consensus 52 ~LP~~~~-~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 52 HLPTGPL-DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp GSCCCST-TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred cCCcccC-CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 3455422 234688888888877621 2345678888888888887555433 45553 36888888887 46632
Q ss_pred -HHhccCCCCCCeeeccCCc
Q 007339 417 -LECMEMLENLSHLYLSSLQ 435 (607)
Q Consensus 417 -~~~~~~l~~L~~L~l~~~~ 435 (607)
-..+..+++|++|++++|.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHhcCCCCCEEECCCCC
Confidence 2456678888888888774
No 195
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=0.00012 Score=72.76 Aligned_cols=148 Identities=12% Similarity=0.113 Sum_probs=86.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+=|.++||+|+|||.||++++..... ..+.++.+.-.+ .. -......+..+.......
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~~~------~f~~v~~s~l~s--------------k~--vGese~~vr~lF~~Ar~~ 240 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHTDC------KFIRVSGAELVQ--------------KY--IGEGSRMVRELFVMAREH 240 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHHTC------EEEEEEGGGGSC--------------SS--TTHHHHHHHHHHHHHHHT
T ss_pred CceEEeCCCCCCHHHHHHHHHHhhCC------CceEEEhHHhhc--------------cc--cchHHHHHHHHHHHHHHh
Confidence 45889999999999999999999752 145555443211 00 011122334444445467
Q ss_pred CcEEEEEecCCCccc----------------ccccccCCC--CCCCCcEEEEEeCchhhhh----hc-ccce-eecccCC
Q 007339 86 EKFVLILDDMWEAFP----------------LQEIGIPEP--SEENGCKLVITTRLYRVCR----SM-KCKQ-VAVELLS 141 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~~~IliTtR~~~~~~----~~-~~~~-~~l~~L~ 141 (607)
.+++|+||+++..-. +..+...+. ....+..||.||....... +. +... ++++.-+
T Consensus 241 aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd 320 (405)
T 4b4t_J 241 APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPS 320 (405)
T ss_dssp CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCC
T ss_pred CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcC
Confidence 789999999986521 011111111 1233445666776443321 11 2233 7888888
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
.++..++|..++....... ....+.+++.+.|+-
T Consensus 321 ~~~R~~Il~~~~~~~~l~~----dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 321 VAARAEILRIHSRKMNLTR----GINLRKVAEKMNGCS 354 (405)
T ss_dssp HHHHHHHHHHHHTTSBCCS----SCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHhcCCCCCc----cCCHHHHHHHCCCCC
Confidence 8888999987775542222 112567888888764
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.99 E-value=5.2e-06 Score=74.36 Aligned_cols=116 Identities=13% Similarity=0.056 Sum_probs=85.0
Q ss_pred ccccCCccCcEeecccc-cCCCC----CC-cccCCCCCCEEeccCCchhh-----hHHhccCCCCCCeeeccCCcCCcCC
Q 007339 372 SSISDLTNLRSLLLRWC-GRLKR----VP-SLAKLLALQYLDLEGTWIEE-----VLECMEMLENLSHLYLSSLQLKKFP 440 (607)
Q Consensus 372 ~~~~~l~~L~~L~l~~~-~~~~~----~~-~~~~l~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~~~l~~~~ 440 (607)
..+...++|+.|+|++| .+... +. .+...++|++|+|++|.+.. +...+...++|++|+|++|.+....
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34677899999999998 65432 12 46677899999999998763 4455667789999999999887532
Q ss_pred ----CccccCCCCCCEEEc--ccCcchhhhh---HHHhhcccccccEEEeeecCccc
Q 007339 441 ----TGILPRLRNLYKLKL--SFGNEALRET---VEEAASLSDGLDYFEGCFSKLKD 488 (607)
Q Consensus 441 ----~~~~~~l~~L~~L~l--~~~~~~~~~~---~~~l~~l~~~L~~L~l~~~~~~~ 488 (607)
...+...++|++|+| ++|....... .+.+...+ +|++|++++|.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~-~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-SCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-CcCEEeccCCCCCh
Confidence 223577889999999 7676544332 24555667 89999999888753
No 197
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.96 E-value=5.5e-06 Score=70.91 Aligned_cols=89 Identities=10% Similarity=0.081 Sum_probs=51.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
.-|.|+|++|+|||++|+.+++........ .+ +++....+. ......... .
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~~~~~~---~v-~~~~~~~~~----------------------~~~~~~~~~---a 75 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGRNAQGE---FV-YRELTPDNA----------------------PQLNDFIAL---A 75 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSSTTTTSC---CE-EEECCTTTS----------------------SCHHHHHHH---H
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCCccCCC---EE-EECCCCCcc----------------------hhhhcHHHH---c
Confidence 457899999999999999998875422222 23 776654322 011111221 1
Q ss_pred CcEEEEEecCCCccc--ccccccCCCCCCCCcEEEEEeCc
Q 007339 86 EKFVLILDDMWEAFP--LQEIGIPEPSEENGCKLVITTRL 123 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~IliTtR~ 123 (607)
....|+||+++.... ...+...+.......++|.||..
T Consensus 76 ~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 76 QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 235789999987732 22232222323345678888773
No 198
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=7.3e-05 Score=75.47 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=85.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+=|.++||+|+|||.+|++++..... ..+.++.+.-.+ .. .......+..+......
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~~------~~~~v~~s~l~s--------------k~--~Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIGA------NFIFSPASGIVD--------------KY--IGESARIIREMFAYAKE 272 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGTCC--------------SS--SSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC------CEEEEehhhhcc--------------cc--chHHHHHHHHHHHHHHh
Confidence 356899999999999999999999752 145555443211 00 01111223344444446
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCC--CCCCCcEEEEEeCchhhhhh----c-ccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEP--SEENGCKLVITTRLYRVCRS----M-KCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~~~IliTtR~~~~~~~----~-~~~~-~~l~~L 140 (607)
..+++|+||+++.... +..+...+. ....+..||.||........ . .... ++++.-
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lP 352 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP 352 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCC
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCc
Confidence 7889999999985421 001111111 12234567777764443321 1 1222 777777
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.++..++|..++....... +.....+++.+.|+-
T Consensus 353 d~~~R~~Il~~~~~~~~~~~----d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 353 NEAGRLEIFKIHTAKVKKTG----EFDFEAAVKMSDGFN 387 (437)
T ss_dssp CHHHHHHHHHHHHHTSCBCS----CCCHHHHHHTCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCc----ccCHHHHHHhCCCCC
Confidence 88888888887775432221 112567788887764
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.90 E-value=0.0001 Score=71.50 Aligned_cols=151 Identities=14% Similarity=0.120 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.|.|+|++|+|||++|+.++.... . ..+.+++ .++. ....... ......+.+....
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~---~---~~i~v~~------~~l~----~~~~g~~------~~~~~~~f~~a~~ 106 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQ---A---NFISIKG------PELL----TMWFGES------EANVREIFDKARQ 106 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT---C---EEEEECH------HHHH----HHHHTTC------TTHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhC---C---CEEEEEh------HHHH----hhhcCch------HHHHHHHHHHHHh
Confidence 45789999999999999999999864 1 2333332 2222 2221111 1223445555545
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCC--CCCCCcEEEEEeCchhhhhh--c---ccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEP--SEENGCKLVITTRLYRVCRS--M---KCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~~~IliTtR~~~~~~~--~---~~~~-~~l~~L 140 (607)
..+.+++||+++.... ...+...+. ....+..||.||........ . .... +.+...
T Consensus 107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p 186 (301)
T 3cf0_A 107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP 186 (301)
T ss_dssp TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCc
Confidence 6789999999975311 111211111 11235567777764432211 1 2222 788899
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHH
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLA 181 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 181 (607)
+.++-.+++..++........ ...+.+++.+.|+|-+
T Consensus 187 ~~~~r~~il~~~l~~~~~~~~----~~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 187 DEKSRVAILKANLRKSPVAKD----VDLEFLAKMTNGFSGA 223 (301)
T ss_dssp CHHHHHHHHHHHHTTSCBCSS----CCHHHHHHTCSSCCHH
T ss_pred CHHHHHHHHHHHHccCCCCcc----chHHHHHHHcCCCCHH
Confidence 999999999888755422211 1234566677777644
No 200
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.90 E-value=5.3e-05 Score=76.38 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=79.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+=|.++||+|+|||.+|+++++.... ..+.++.+.-.+ .. .......+..+......
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~~------~~~~v~~~~l~~--------------~~--~Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTKA------AFIRVNGSEFVH--------------KY--LGEGPRMVRDVFRLARE 263 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHTC------EEEEEEGGGTCC--------------SS--CSHHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC------CeEEEecchhhc--------------cc--cchhHHHHHHHHHHHHH
Confidence 345899999999999999999999752 145555443211 00 01111233344444445
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCC--CCCCCcEEEEEeCchhhhh----hc-ccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEP--SEENGCKLVITTRLYRVCR----SM-KCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~~~IliTtR~~~~~~----~~-~~~~-~~l~~L 140 (607)
..++++++|+++.... +..+...+. ....+..||.||....... +. +... +++..+
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l 343 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence 6789999999864311 111111111 1233445667776433221 11 2222 677667
Q ss_pred CH-HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SK-QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~-~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
.. ++-.++|..++....... +...+.+++.+.|+-
T Consensus 344 Pd~~~R~~Il~~~~~~~~l~~----~~dl~~lA~~t~G~s 379 (428)
T 4b4t_K 344 RDRRERRLIFGTIASKMSLAP----EADLDSLIIRNDSLS 379 (428)
T ss_dssp CCHHHHHHHHHHHHHSSCBCT----TCCHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHhcCCCCCc----ccCHHHHHHHCCCCC
Confidence 54 444556665554332111 112567788887763
No 201
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.88 E-value=4.5e-05 Score=77.40 Aligned_cols=220 Identities=10% Similarity=0.007 Sum_probs=129.4
Q ss_pred cchhhhcCCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHHhccCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLECMEML 423 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~~~~~l 423 (607)
+....|.+|++|+.+.++.+. ..++ ..|..+.+|+.+.+..+ ...... .+.++..|+.+.+..+. ..+.......
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~ 229 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL-YYLGDFALSK 229 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-CEECTTTTTT
T ss_pred cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-eEeehhhccc
Confidence 455678899999999987653 3343 35788888988888754 222223 67788888888776652 2333334455
Q ss_pred CCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeecCccccccccccccCCccee
Q 007339 424 ENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFSKLKDFNRYVKSTDGRGSKN 503 (607)
Q Consensus 424 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 503 (607)
.+|+.+.+.. .++.+....+..+.+|+.+.+..+... .....+.... .++.+......+ +. .....+..|+.
T Consensus 230 ~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~-~l~~~~~~~~~i---~~-~~F~~~~~L~~ 301 (394)
T 4fs7_A 230 TGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCS-GLKKVIYGSVIV---PE-KTFYGCSSLTE 301 (394)
T ss_dssp CCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCT-TCCEEEECSSEE---CT-TTTTTCTTCCE
T ss_pred CCCceEEECC-CceecccccccccccceeEEcCCCcce--eecccccccc-ccceeccCceee---cc-ccccccccccc
Confidence 6777777754 345555566778888888887754321 1112344555 666665543221 11 12222344665
Q ss_pred EEEEeecchhhhhhcccccccccccceeeeeeeccCCCCCc-ccCCcccceeeeeeecCcccccCccccccccccccccc
Q 007339 504 YCLVLSESWMYYMFIRDLITDLEVDKSVRLFACKICEREEP-IVLPEDVQYLEMIRVDDVASLNDVLPREQGLVNIGKFS 582 (607)
Q Consensus 504 l~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~~~~~~ 582 (607)
+.+..+ ........|.++.+|+.+.|.++ +...+.. +..+.+|+.+.+..+ ++.+.+ ..+ .+|
T Consensus 302 i~l~~~----i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~-~aF--------~~C 365 (394)
T 4fs7_A 302 VKLLDS----VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGA-NAF--------QGC 365 (394)
T ss_dssp EEECTT----CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT-TTB--------TTC
T ss_pred cccccc----cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehH-HHh--------hCC
Confidence 554311 11223456777888888888643 3333222 566777888877544 455542 223 678
Q ss_pred cccceEEEec
Q 007339 583 HDLKVLRFHY 592 (607)
Q Consensus 583 ~~L~~L~l~~ 592 (607)
++|+.+++..
T Consensus 366 ~~L~~i~lp~ 375 (394)
T 4fs7_A 366 INLKKVELPK 375 (394)
T ss_dssp TTCCEEEEEG
T ss_pred CCCCEEEECC
Confidence 8888888753
No 202
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=5.2e-05 Score=73.39 Aligned_cols=131 Identities=14% Similarity=0.079 Sum_probs=80.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC-CCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ-PLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK 83 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~ 83 (607)
.+...++|++|+|||++|+.+++....-......+.+++.+. ...++++ +.+.+.+.....
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p~----------------- 79 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSPE----------------- 79 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCCS-----------------
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhccc-----------------
Confidence 578899999999999999999875311101122356666543 3333333 334444432110
Q ss_pred cCCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCch-hhhhhcccceeecccCCHHHHHHHhHhhh
Q 007339 84 AKEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRLY-RVCRSMKCKQVAVELLSKQEAFNLFIDGV 153 (607)
Q Consensus 84 ~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~~-~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 153 (607)
.+++.++|+|+++.+. ..+.+...+..-...+.+|++|.++ .+........+++.++++++..+.+.+.+
T Consensus 80 ~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHHHHHHHHHHH
T ss_pred cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHHHHHHHHHHh
Confidence 2467899999998873 3344444443333456666665433 33322211268999999999999998887
No 203
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00013 Score=72.74 Aligned_cols=149 Identities=12% Similarity=0.114 Sum_probs=84.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+=|.++||+|+|||.||++++..... ..+.++.+.-. ... .......+..+......
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~------~fi~v~~s~l~--------------sk~--vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSA------TFLRIVGSELI--------------QKY--LGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTC------EEEEEESGGGC--------------CSS--SSHHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCC------CEEEEEHHHhh--------------hcc--CchHHHHHHHHHHHHHh
Confidence 355899999999999999999999752 13444433211 000 01112233444444446
Q ss_pred CCcEEEEEecCCCccccc----------------ccccCCC--CCCCCcEEEEEeCchhhhhhc-----ccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFPLQ----------------EIGIPEP--SEENGCKLVITTRLYRVCRSM-----KCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~~~----------------~l~~~~~--~~~~~~~IliTtR~~~~~~~~-----~~~~-~~l~~L 140 (607)
..+++|+||+++....-. .+...+. ....+..||.||......... +... ++++.-
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence 678999999998552100 1111111 122344566677644443221 1222 677777
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.++..++|..++....... +-..+.|++.+.|+-
T Consensus 354 d~~~R~~Il~~~l~~~~l~~----dvdl~~LA~~T~GfS 388 (437)
T 4b4t_I 354 DLSTKKKILGIHTSKMNLSE----DVNLETLVTTKDDLS 388 (437)
T ss_dssp CHHHHHHHHHHHHTTSCBCS----CCCHHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCC----cCCHHHHHHhCCCCC
Confidence 88888888887775542221 112567788887764
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00016 Score=72.90 Aligned_cols=149 Identities=16% Similarity=0.131 Sum_probs=85.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+=|.++|++|+|||.||++++..... ..+.++.+.-.+ .. .......+..+......
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~~------~fi~vs~s~L~s--------------k~--vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTDA------TFIRVIGSELVQ--------------KY--VGEGARMVRELFEMART 300 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCC--------------CS--SSHHHHHHHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCC------CeEEEEhHHhhc--------------cc--CCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999752 144555433111 00 01111233444444446
Q ss_pred CCcEEEEEecCCCcccc----------------cccccCCC--CCCCCcEEEEEeCchhhhh----hc-ccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFPL----------------QEIGIPEP--SEENGCKLVITTRLYRVCR----SM-KCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~~----------------~~l~~~~~--~~~~~~~IliTtR~~~~~~----~~-~~~~-~~l~~L 140 (607)
..+++|+||+++....- ..+...+. ....+..||.||....... +. +... ++++.-
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lP 380 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLP 380 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCC
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCc
Confidence 77899999999855210 01111111 1123444566665333321 11 2333 778888
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.++-.++|..++........ -..+.|++.+.|+-
T Consensus 381 d~~~R~~Ilk~~l~~~~l~~d----vdl~~LA~~T~GfS 415 (467)
T 4b4t_H 381 DLEGRANIFRIHSKSMSVERG----IRWELISRLCPNST 415 (467)
T ss_dssp CHHHHHHHHHHHHTTSCBCSS----CCHHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCCC----CCHHHHHHHCCCCC
Confidence 888888999877755422211 12467788888764
No 205
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.79 E-value=3.2e-05 Score=70.31 Aligned_cols=97 Identities=22% Similarity=0.222 Sum_probs=54.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+.+.|+|++|+|||+||+.+++..... ...++|+++. ++...+...... . ....+...+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~~----~-----~~~~~~~~~~~~ 116 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIVYVP------ELFRELKHSLQD----Q-----TMNEKLDYIKKV 116 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEEEHH------HHHHHHHHC-------C-----CCHHHHHHHHHS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEhH------HHHHHHHHHhcc----c-----hHHHHHHHhcCC
Confidence 689999999999999999999987532 2346677653 333333322211 0 122333333222
Q ss_pred CcEEEEEecCCCc--cccc--cccc-CCCCC-CCCcEEEEEeC
Q 007339 86 EKFVLILDDMWEA--FPLQ--EIGI-PEPSE-ENGCKLVITTR 122 (607)
Q Consensus 86 ~~~LlVlDdv~~~--~~~~--~l~~-~~~~~-~~~~~IliTtR 122 (607)
-+|||||++.. ..|. .+.. .+... ..+.++|+||.
T Consensus 117 --~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn 157 (202)
T 2w58_A 117 --PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSN 157 (202)
T ss_dssp --SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEES
T ss_pred --CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 39999999653 3222 1221 11111 23456888888
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.77 E-value=0.0004 Score=68.45 Aligned_cols=47 Identities=4% Similarity=0.125 Sum_probs=36.1
Q ss_pred eecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCchHHHHH
Q 007339 135 VAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLPLAIVT 184 (607)
Q Consensus 135 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~ 184 (607)
..+++.+.++..+++.+.+......- .++.+..|++.++|.|..+..
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~~~~---~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMDVEI---EDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHTSTTCHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCc---CHHHHHHHHHhcCCChHHHHH
Confidence 78999999999999998774332222 567899999999999965433
No 207
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.76 E-value=0.0002 Score=69.07 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+.+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999999974
No 208
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.73 E-value=2.5e-05 Score=73.70 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=49.8
Q ss_pred cCCCCCCEEeccCCchhhh---HHhccCCCCCCeeeccCCcCCcCCCccccCCC--CCCEEEcccCcchh------hhhH
Q 007339 398 AKLLALQYLDLEGTWIEEV---LECMEMLENLSHLYLSSLQLKKFPTGILPRLR--NLYKLKLSFGNEAL------RETV 466 (607)
Q Consensus 398 ~~l~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~~~~~~------~~~~ 466 (607)
.++++|+.|+|++|+++.+ |..+..+++|+.|+|++|.++.+.. +..++ +|++|+|++|.... ....
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~--l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG--GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh--hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4566777777777766643 3455677777777777777776522 23333 77788887776543 1112
Q ss_pred HHhhcccccccEEE
Q 007339 467 EEAASLSDGLDYFE 480 (607)
Q Consensus 467 ~~l~~l~~~L~~L~ 480 (607)
..+..+| +|+.|+
T Consensus 245 ~il~~~P-~L~~LD 257 (267)
T 3rw6_A 245 AIRERFP-KLLRLD 257 (267)
T ss_dssp HHHHHCT-TCCEES
T ss_pred HHHHHCc-ccCeEC
Confidence 3456667 777665
No 209
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00015 Score=73.09 Aligned_cols=149 Identities=11% Similarity=0.085 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+=|.++||+|+|||.+|++++..... ..+.++.+.-.+ ... ......+..+......
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~~------~f~~v~~s~l~~--------------~~v--Gese~~ir~lF~~A~~ 272 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTNA------TFLKLAAPQLVQ--------------MYI--GEGAKLVRDAFALAKE 272 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTC------EEEEEEGGGGCS--------------SCS--SHHHHHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhCC------CEEEEehhhhhh--------------ccc--chHHHHHHHHHHHHHh
Confidence 456899999999999999999999752 145555433111 000 1111223334444445
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCCC--CCCCcEEEEEeCchhhhhh----c-ccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEPS--EENGCKLVITTRLYRVCRS----M-KCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~----~-~~~~-~~l~~L 140 (607)
..+++|+||+++.... ...+...+.. ...+..||.||........ . +... ++++.-
T Consensus 273 ~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lP 352 (434)
T 4b4t_M 273 KAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLP 352 (434)
T ss_dssp HCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCC
T ss_pred cCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCc
Confidence 6789999999874310 0112222221 1234456667764433221 1 2222 778877
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.++..++|..++........ -..+.|++.+.|+-
T Consensus 353 d~~~R~~Il~~~~~~~~~~~d----vdl~~lA~~t~G~s 387 (434)
T 4b4t_M 353 SEDSRAQILQIHSRKMTTDDD----INWQELARSTDEFN 387 (434)
T ss_dssp CHHHHHHHHHHHHHHSCBCSC----CCHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHhcCCCCCCc----CCHHHHHHhCCCCC
Confidence 888888888776644321111 12567788887763
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.71 E-value=0.00012 Score=69.31 Aligned_cols=153 Identities=12% Similarity=0.084 Sum_probs=80.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+-+.|+|++|+|||++|+.++.... .. .+.++...-.+ .... ........+.+.....
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~---~~---~~~i~~~~~~~--------------~~~~--~~~~~~~~~~~~a~~~ 103 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK---VP---FFTISGSDFVE--------------MFVG--VGASRVRDMFEQAKKA 103 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT---CC---EEEECSCSSTT--------------SCCC--CCHHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC---CC---EEEEeHHHHHH--------------Hhhh--hhHHHHHHHHHHHHHc
Confidence 4588999999999999999998864 11 34444332111 0000 1111233344444455
Q ss_pred CcEEEEEecCCCccc----------------ccccccCCC--CCCCCcEEEEEeCchhhh-hhc----ccce-eecccCC
Q 007339 86 EKFVLILDDMWEAFP----------------LQEIGIPEP--SEENGCKLVITTRLYRVC-RSM----KCKQ-VAVELLS 141 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~~~IliTtR~~~~~-~~~----~~~~-~~l~~L~ 141 (607)
.+.++++|+++.... +..+...+. ....+..||.||...... ... .... +.++..+
T Consensus 104 ~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~ 183 (257)
T 1lv7_A 104 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 183 (257)
T ss_dssp CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCC
T ss_pred CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCC
Confidence 678999999864311 011111111 112345567777644322 111 1122 6777778
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCC-chHHHHH
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGC-LPLAIVT 184 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~PLal~~ 184 (607)
.++-.+++..++....... +.....+++.+.| .+--|..
T Consensus 184 ~~~r~~il~~~~~~~~l~~----~~~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 184 VRGREQILKVHMRRVPLAP----DIDAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp HHHHHHHHHHHHTTSCBCT----TCCHHHHHHTCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCc----cccHHHHHHHcCCCCHHHHHH
Confidence 8888888877764432111 1123456677777 5654443
No 211
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.70 E-value=1.4e-05 Score=71.23 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=55.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.++|+|++|+||||||+.++...... ..+. +.+++ ..++...+.......... .+.+.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-~g~~-~~~~~------~~~~~~~~~~~~~~~~~~---------~~~~~~-- 98 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEK-KGIR-GYFFD------TKDLIFRLKHLMDEGKDT---------KFLKTV-- 98 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHH-SCCC-CCEEE------HHHHHHHHHHHHHHTCCS---------HHHHHH--
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHH-cCCe-EEEEE------HHHHHHHHHHHhcCchHH---------HHHHHh--
Confidence 4689999999999999999999887422 1221 34443 344555554444322110 233333
Q ss_pred CCcEEEEEecCCCc--cccc--ccccCCCC-CCCCcEEEEEeC
Q 007339 85 KEKFVLILDDMWEA--FPLQ--EIGIPEPS-EENGCKLVITTR 122 (607)
Q Consensus 85 ~~~~LlVlDdv~~~--~~~~--~l~~~~~~-~~~~~~IliTtR 122 (607)
.+.-+||||++... ..+. .+...+.. ...+..||+||.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 24568999999732 2221 11111111 124567888888
No 212
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.67 E-value=3.9e-05 Score=73.29 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=68.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKE 86 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 86 (607)
-+.|+|++|+|||++|+.++...... | +.+++..-.+. +.. . .......+.+.....+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~---~---~~v~~~~~~~~----------~~~-----~-~~~~~~~~~~~a~~~~ 103 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVP---F---FSMGGSSFIEM----------FVG-----L-GASRVRDLFETAKKQA 103 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCC---C---CCCCSCTTTTS----------CSS-----S-CSSSSSTTHHHHHHSC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC---E---EEechHHHHHh----------hcc-----h-HHHHHHHHHHHHHhcC
Confidence 47899999999999999999986421 2 11222211100 000 0 0111222333333456
Q ss_pred cEEEEEecCCCccc-----------------ccccccCCCCC---CCCcEEEEEeCchhhhh--hc---ccce-eecccC
Q 007339 87 KFVLILDDMWEAFP-----------------LQEIGIPEPSE---ENGCKLVITTRLYRVCR--SM---KCKQ-VAVELL 140 (607)
Q Consensus 87 ~~LlVlDdv~~~~~-----------------~~~l~~~~~~~---~~~~~IliTtR~~~~~~--~~---~~~~-~~l~~L 140 (607)
..+|+||+++.... ...+...+... .....||.||....... .. .... +.++..
T Consensus 104 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p 183 (268)
T 2r62_A 104 PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 183 (268)
T ss_dssp SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCC
T ss_pred CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCc
Confidence 78999999976521 22233222211 12345666776443211 11 2222 778888
Q ss_pred CHHHHHHHhHhhhCC
Q 007339 141 SKQEAFNLFIDGVGS 155 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~ 155 (607)
+.++..+++...+..
T Consensus 184 ~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 184 DFNGRVEILKVHIKG 198 (268)
T ss_dssp CTTTHHHHHHHHTSS
T ss_pred CHHHHHHHHHHHHhc
Confidence 888888888777643
No 213
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.66 E-value=0.00011 Score=74.66 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=24.5
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCc-cccCCccCcEeeccc
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPS-SISDLTNLRSLLLRW 387 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~-~~~~l~~L~~L~l~~ 387 (607)
|...+|.+|.+|+.+.++.+ ++.+.. .|.++.+|+.+++..
T Consensus 62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~ 103 (394)
T 4fs7_A 62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPD 103 (394)
T ss_dssp ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCT
T ss_pred hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCC
Confidence 55566666777777766532 554433 466666666666653
No 214
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.65 E-value=0.00028 Score=68.82 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=27.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
.+.+.|+|++|+|||++|+.+++.... ..+.+++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~------~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA------PFIKVEATK 85 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC------CEEEEEGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC------CEEEEcchh
Confidence 456889999999999999999998731 255566544
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=3.6e-05 Score=72.52 Aligned_cols=78 Identities=24% Similarity=0.191 Sum_probs=43.0
Q ss_pred cCCCCceEEEccCCCCccCC---ccccCCccCcEeecccccCCCCCC--cccCCCCCCEEeccCCchhh-hH-------H
Q 007339 352 VHMNGLKVLNLSHTDIEVLP---SSISDLTNLRSLLLRWCGRLKRVP--SLAKLLALQYLDLEGTWIEE-VL-------E 418 (607)
Q Consensus 352 ~~l~~L~~L~l~~~~~~~l~---~~~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~l~~-l~-------~ 418 (607)
.++++|+.|+|++|.++.++ ..+..+++|+.|+|++|.+..... .+..+ +|++|+|++|.++. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 35667777777777766433 344566666666666666554311 22233 66666666666552 21 1
Q ss_pred hccCCCCCCeee
Q 007339 419 CMEMLENLSHLY 430 (607)
Q Consensus 419 ~~~~l~~L~~L~ 430 (607)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244556666555
No 216
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.57 E-value=0.00035 Score=72.20 Aligned_cols=147 Identities=12% Similarity=0.123 Sum_probs=75.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCC--C--CCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPN--K--FNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGM 81 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~--~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 81 (607)
+-+.|+|++|+|||++|+.++........ . -..++.++++ ... ..........+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------------~~~------~g~~e~~~~~~~~~ 262 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------------TKY------RGEFEDRLKKVMDE 262 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------------------CTTHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------------ccc------cchHHHHHHHHHHH
Confidence 45689999999999999999998742110 0 1113344433 000 01112344556666
Q ss_pred HhcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhh------hhh--cccceeecccCCHHHHHHHhHhhh
Q 007339 82 LKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRV------CRS--MKCKQVAVELLSKQEAFNLFIDGV 153 (607)
Q Consensus 82 ~~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~------~~~--~~~~~~~l~~L~~~ea~~L~~~~~ 153 (607)
.....+.+|++|. .......+...+. ....++|.+|..... ... -....+.++..+.++..+++....
T Consensus 263 ~~~~~~~iLfiD~--~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 263 IRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHhcCCeEEEEeC--chhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 6566788999992 2222222333333 223556666654431 010 122238899999999999998776
Q ss_pred CCCC-CCCccchHHHHHHHHHHc
Q 007339 154 GSSI-LQVPILNKEIINEVVEEC 175 (607)
Q Consensus 154 ~~~~-~~~~~~~~~~~~~i~~~~ 175 (607)
..-. .......++....+++..
T Consensus 339 ~~~~~~~~~~i~~~al~~l~~~s 361 (468)
T 3pxg_A 339 DRYEAHHRVSITDDAIEAAVKLS 361 (468)
T ss_dssp TTSGGGSSCSCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHH
Confidence 4410 000111445555555543
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.57 E-value=0.00036 Score=71.57 Aligned_cols=148 Identities=12% Similarity=0.127 Sum_probs=83.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+-|.|+|++|+|||+||+.++..... . .+.++++.-... . .. ........+......+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~---~---f~~is~~~~~~~--------------~-~g-~~~~~~r~lf~~A~~~ 107 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANV---P---FFHISGSDFVEL--------------F-VG-VGAARVRDLFAQAKAH 107 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTC---C---EEEEEGGGTTTC--------------C-TT-HHHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC---C---eeeCCHHHHHHH--------------H-hc-ccHHHHHHHHHHHHhc
Confidence 34889999999999999999998642 1 345554432110 0 00 0111233344444456
Q ss_pred CcEEEEEecCCCccc----------------ccccccCCC--CCCCCcEEEEEeCchhhhhh--c---ccc-eeecccCC
Q 007339 86 EKFVLILDDMWEAFP----------------LQEIGIPEP--SEENGCKLVITTRLYRVCRS--M---KCK-QVAVELLS 141 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~----------------~~~l~~~~~--~~~~~~~IliTtR~~~~~~~--~---~~~-~~~l~~L~ 141 (607)
.+.+|+||+++.... +..+...+. ....+..||.||........ . ... .+.++..+
T Consensus 108 ~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd 187 (476)
T 2ce7_A 108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187 (476)
T ss_dssp CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCC
Confidence 789999999976421 111211111 01235567777765543221 1 222 27778888
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
.++-.+++..++....... +.....+++.+.|+.
T Consensus 188 ~~~R~~Il~~~~~~~~l~~----~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 188 MLGRKKILEIHTRNKPLAE----DVNLEIIAKRTPGFV 221 (476)
T ss_dssp HHHHHHHHHHHHTTSCBCT----TCCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHhCCCcc----hhhHHHHHHhcCCCc
Confidence 8888888887775542221 112455788888876
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.57 E-value=0.00019 Score=70.05 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=49.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
..+.|+|++|+|||++|+.++...... -...+.++++....... ....++.... ... ......+...+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~~~~~~~----~~~l~g~~~~-~~~-~~~~~~~~~~~~~~ 118 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHA----VSRLIGAPPG-YVG-YEEGGQLTEAVRRR 118 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGGCCSTTH----HHHHHCCCTT-STT-TTTCCHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeeccccccccc----HHHhcCCCCc-ccc-ccccchHHHHHHhC
Confidence 579999999999999999999987421 22366777765433221 1122332211 001 11112334444445
Q ss_pred CcEEEEEecCCCc
Q 007339 86 EKFVLILDDMWEA 98 (607)
Q Consensus 86 ~~~LlVlDdv~~~ 98 (607)
...+++||+++..
T Consensus 119 ~~~vl~lDEi~~l 131 (311)
T 4fcw_A 119 PYSVILFDAIEKA 131 (311)
T ss_dssp SSEEEEEETGGGS
T ss_pred CCeEEEEeChhhc
Confidence 6689999999876
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.51 E-value=0.00067 Score=71.43 Aligned_cols=133 Identities=15% Similarity=0.125 Sum_probs=66.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
...+.|+|++|+||||||+.++..... . ...+++....+...+........+. ............ .
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~~---~---~~~i~~~~~~~~~~~~g~~~~~ig~-------~~~~~~~~~~~a-~ 173 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLGR---K---FVRISLGGVRDESEIRGHRRTYVGA-------MPGRIIQGMKKA-G 173 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHTC---E---EEEECCCC---------------------------CHHHHHHTT-C
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC---C---eEEEEecccchhhhhhhHHHHHhcc-------CchHHHHHHHHh-h
Confidence 468999999999999999999988741 1 2333333322211111111111110 111111122211 2
Q ss_pred CCcEEEEEecCCCccc------ccccccCCCCC---------------CCCcEEEEEeCchh-----hhhhcccceeecc
Q 007339 85 KEKFVLILDDMWEAFP------LQEIGIPEPSE---------------ENGCKLVITTRLYR-----VCRSMKCKQVAVE 138 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~------~~~l~~~~~~~---------------~~~~~IliTtR~~~-----~~~~~~~~~~~l~ 138 (607)
..+-+++||+++.... ...+...+... .....||.||.... +..++ ..+.+.
T Consensus 174 ~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~--~vi~~~ 251 (543)
T 3m6a_A 174 KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRM--EIINIA 251 (543)
T ss_dssp SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHE--EEEECC
T ss_pred ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhc--ceeeeC
Confidence 2344889999986632 12232222110 03445666666432 22233 237889
Q ss_pred cCCHHHHHHHhHhhh
Q 007339 139 LLSKQEAFNLFIDGV 153 (607)
Q Consensus 139 ~L~~~ea~~L~~~~~ 153 (607)
.++.++-.+++.+++
T Consensus 252 ~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 252 GYTEIEKLEIVKDHL 266 (543)
T ss_dssp CCCHHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999888887765
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.49 E-value=0.00019 Score=69.56 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
...|.|+|++|+|||++|+.+++....... ..+.++++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~---~~v~v~~~~~ 64 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDR---PLVTLNCAAL 64 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSS---CCCEEECSSC
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCC---CeEEEeCCCC
Confidence 345789999999999999999987532212 2455666653
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.48 E-value=0.0001 Score=70.15 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=29.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
..|.|+|++|+|||++|+.+++..... -...+.++++..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~---~~~~~~v~~~~~ 68 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRW---QGPFISLNCAAL 68 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTT---TSCEEEEEGGGS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCcc---CCCeEEEecCCC
Confidence 467899999999999999999886422 123566777654
No 222
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.45 E-value=0.00083 Score=69.45 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=86.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.|+|++|+|||++|+.+++... . ..+.+++.. +. .... .........+......
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~---~---~fv~vn~~~----------l~----~~~~--g~~~~~~~~~f~~A~~ 295 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETG---A---FFFLINGPE----------IM----SKLA--GESESNLRKAFEEAEK 295 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCS---S---EEEEEEHHH----------HH----TSCT--THHHHHHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhC---C---CEEEEEchH----------hh----hhhc--chhHHHHHHHHHHHHh
Confidence 35689999999999999999998863 1 245555321 11 1000 1111122333444445
Q ss_pred CCcEEEEEecCCCccc-------------ccccccCCC--CCCCCcEEEEEeCchhhh-----hhcccce-eecccCCHH
Q 007339 85 KEKFVLILDDMWEAFP-------------LQEIGIPEP--SEENGCKLVITTRLYRVC-----RSMKCKQ-VAVELLSKQ 143 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~-------------~~~l~~~~~--~~~~~~~IliTtR~~~~~-----~~~~~~~-~~l~~L~~~ 143 (607)
+++.+|+||+++.... ...+...+. ....+.+||.||...... ....... +.+...+.+
T Consensus 296 ~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~ 375 (489)
T 3hu3_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (489)
T ss_dssp TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHH
T ss_pred cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHH
Confidence 6788999999954311 111211111 122345666676644221 1112333 788899999
Q ss_pred HHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCc-hHHHHHH
Q 007339 144 EAFNLFIDGVGSSILQVPILNKEIINEVVEECGCL-PLAIVTV 185 (607)
Q Consensus 144 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-PLal~~~ 185 (607)
+-.+++..++....... ......+++.+.|+ +-.|..+
T Consensus 376 eR~~IL~~~~~~~~l~~----~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 376 GRLEILQIHTKNMKLAD----DVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp HHHHHHHHHTTTSCBCT----TCCHHHHHHTCTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcc----hhhHHHHHHHccCCcHHHHHHH
Confidence 99999998876542222 12245677777765 4444433
No 223
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.45 E-value=9.6e-05 Score=65.93 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+.+.|+|++|+|||++|+.+++...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999998874
No 224
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.33 E-value=0.00061 Score=70.25 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=32.7
Q ss_pred eecccCCHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHc-CCchHH
Q 007339 135 VAVELLSKQEAFNLFIDGVGSSILQVPILNKEIINEVVEEC-GCLPLA 181 (607)
Q Consensus 135 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~PLa 181 (607)
+.+.+++.++..+++..++......- .++.+..|++.+ +|.|..
T Consensus 361 ~~~~~~~~~e~~~iL~~~~~~~~~~~---~~~~~~~i~~~a~~g~~r~ 405 (456)
T 2c9o_A 361 IRTMLYTPQEMKQIIKIRAQTEGINI---SEEALNHLGEIGTKTTLRY 405 (456)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHHHSCHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHccCCCHHH
Confidence 79999999999999998764322222 567778888888 777754
No 225
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.28 E-value=0.00068 Score=73.76 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=85.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+-|.++|++|+|||+||+.++..... ..+.|+... + .... .......+..+.+....
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~------~~~~v~~~~----------l----~sk~--~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGA------FFFLINGPE----------I----MSKL--AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTC------EEEEEEHHH----------H----HSSC--TTHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC------eEEEEEhHH----------h----hccc--chHHHHHHHHHHHHHHH
Confidence 456899999999999999999998742 145555322 1 0110 11122234444555556
Q ss_pred CCcEEEEEecCCCccc-------------ccccccCCCC--CCCCcEEEEEeCchhhhh----hc-ccce-eecccCCHH
Q 007339 85 KEKFVLILDDMWEAFP-------------LQEIGIPEPS--EENGCKLVITTRLYRVCR----SM-KCKQ-VAVELLSKQ 143 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~-------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~----~~-~~~~-~~l~~L~~~ 143 (607)
..+.+|+||+++.... ...+...+.. ...+..||.||....... +. .... +++..-+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 7789999999976521 0111111110 112334555665433321 11 2223 788888888
Q ss_pred HHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 144 EAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 144 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+-.++|..+........ +.....+++.+.|+.
T Consensus 376 ~R~~IL~~~l~~~~~~~----dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 376 GRLEILQIHTKNMKLAD----DVDLEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHTCSSSEECT----TCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHhcCCCCCc----ccCHHHHHHhcCCCC
Confidence 88888887775542221 123567888888874
No 226
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.26 E-value=0.00024 Score=79.44 Aligned_cols=155 Identities=12% Similarity=0.127 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC----CCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN----KFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (607)
.+.+.|+|++|+|||++|+.++........ .-..+++++++.... +... ..........+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~~~--~g~~~~~l~~~~~ 256 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GAKY--RGEFEERLKAVIQ 256 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cCcc--chHHHHHHHHHHH
Confidence 345789999999999999999998732100 012355665433210 0000 0111122333444
Q ss_pred HHhc-CCcEEEEEecCCCccc-------cc---ccccCCCCCCCCcEEEEEeCchhh-----hhh-c-ccceeecccCCH
Q 007339 81 MLKA-KEKFVLILDDMWEAFP-------LQ---EIGIPEPSEENGCKLVITTRLYRV-----CRS-M-KCKQVAVELLSK 142 (607)
Q Consensus 81 ~~~~-~~~~LlVlDdv~~~~~-------~~---~l~~~~~~~~~~~~IliTtR~~~~-----~~~-~-~~~~~~l~~L~~ 142 (607)
.... +++.+|+||+++.... ++ .+...+. . ....+|.+|..... ... . ....+.+++.+.
T Consensus 257 ~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~ 334 (854)
T 1qvr_A 257 EVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-R-GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTV 334 (854)
T ss_dssp HHHTTCSSEEEEECCC-------------------HHHHH-T-TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCH
T ss_pred HHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-C-CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCH
Confidence 4433 4689999999987631 11 1111111 1 23345555553322 111 1 122388999999
Q ss_pred HHHHHHhHhhhCCC-CCCCccchHHHHHHHHHHc
Q 007339 143 QEAFNLFIDGVGSS-ILQVPILNKEIINEVVEEC 175 (607)
Q Consensus 143 ~ea~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~~ 175 (607)
++..+++....... ........++....+++.+
T Consensus 335 ~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 335 EETISILRGLKEKYEVHHGVRISDSAIIAAATLS 368 (854)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 99999997544211 0000112456666666665
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.22 E-value=0.0015 Score=72.08 Aligned_cols=128 Identities=12% Similarity=0.136 Sum_probs=69.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCC---CCe-EEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNK---FND-VIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~---f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (607)
.+-+.|+|++|+|||++|+.++......... .+. ++.+++ +... ..........+..
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------------g~~~--~G~~e~~l~~~~~ 261 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------------GTKY--RGEFEDRLKKVMD 261 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------------------CTTHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------------cccc--cchHHHHHHHHHH
Confidence 3457899999999999999999986321100 111 333333 1100 1122334555666
Q ss_pred HHhcCCcEEEEEecCCCcccccccccCCCCCCCCcEEEEEeCchhhh------h--hcccceeecccCCHHHHHHHhHhh
Q 007339 81 MLKAKEKFVLILDDMWEAFPLQEIGIPEPSEENGCKLVITTRLYRVC------R--SMKCKQVAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 81 ~~~~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~~IliTtR~~~~~------~--~~~~~~~~l~~L~~~ea~~L~~~~ 152 (607)
.....++.+|++|. .......+...+. ....++|.+|...... . .-....+.++..+.++..+++...
T Consensus 262 ~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~ 337 (758)
T 3pxi_A 262 EIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGL 337 (758)
T ss_dssp HHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHT
T ss_pred HHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 66567789999992 2222223333333 2345666666644410 0 112233889999999999999876
Q ss_pred hCC
Q 007339 153 VGS 155 (607)
Q Consensus 153 ~~~ 155 (607)
...
T Consensus 338 ~~~ 340 (758)
T 3pxi_A 338 RDR 340 (758)
T ss_dssp TTT
T ss_pred HHH
Confidence 644
No 228
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.19 E-value=0.0029 Score=63.94 Aligned_cols=108 Identities=13% Similarity=0.230 Sum_probs=48.2
Q ss_pred cchhhhcCCC-CceEEEccCCCCccCC-ccccCCccCcEeecccccC--CCCCC--cccCCCCCCEEeccCCchhhhHH-
Q 007339 346 IPECFFVHMN-GLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGR--LKRVP--SLAKLLALQYLDLEGTWIEEVLE- 418 (607)
Q Consensus 346 ~~~~~~~~l~-~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~--~~~~~--~~~~l~~L~~L~l~~~~l~~l~~- 418 (607)
|++.+|.+++ .|+.+.++.+ ++.+. ..|.++.+|+.+.+..+.. ...++ .|.++.+|+.+.+..+ ++.++.
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 4455555553 3566655543 44333 2455566666665554321 11222 4445555555444332 333322
Q ss_pred hccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcc
Q 007339 419 CMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLS 456 (607)
Q Consensus 419 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 456 (607)
.+..+.+|+.+.+.. .++.+....+..+.+|+.+.+.
T Consensus 132 aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred hhhhhcccccccccc-eeeeecccceeccccccccccc
Confidence 244445555555532 2333333334444444444443
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.18 E-value=0.00025 Score=78.30 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=28.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
.+.++|++|+|||++|+.+++.... .-...+.++++.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~---~~~~~i~i~~s~ 559 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG---DEESMIRIDMSE 559 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS---CTTCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC---CCcceEEEechh
Confidence 6999999999999999999998732 122366777654
No 230
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.15 E-value=0.0012 Score=60.49 Aligned_cols=44 Identities=23% Similarity=0.159 Sum_probs=33.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQ 54 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 54 (607)
..+++|.|++|+||||||..++. .. -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~~-----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-LS-----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-HH-----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-Hc-----CCcEEEEECCCCCCHHHHH
Confidence 35899999999999999999998 21 2358899887755554443
No 231
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.10 E-value=0.0013 Score=66.55 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=86.8
Q ss_pred cchhhhcCCCCceEEEccCCCCccCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccCC
Q 007339 346 IPECFFVHMNGLKVLNLSHTDIEVLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEML 423 (607)
Q Consensus 346 ~~~~~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l 423 (607)
+...+|..+.+|+.+.+..+...--...|.++..|+.+.+.. ....... .|.++.+|+.+++..+ ++.+.. .|.+|
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cccceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 555678889999998887654332234678888898888863 2332333 7888899999998754 666654 57788
Q ss_pred CCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEeeec
Q 007339 424 ENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGCFS 484 (607)
Q Consensus 424 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~~~ 484 (607)
.+|+.+.+.. +++.+....|.+|++|+.+++.++... ...+.... +|+.+.+..+
T Consensus 334 ~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~-~L~~i~i~~~ 388 (394)
T 4gt6_A 334 EQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDS-GLQNLPVAPG 388 (394)
T ss_dssp TTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCC-CC--------
T ss_pred CCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceee----hhhhhccC-CCCEEEeCCC
Confidence 9999999864 477888888889999999988865321 23445555 6777666543
No 232
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.08 E-value=0.00043 Score=66.27 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=25.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEe
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTV 44 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~ 44 (607)
+++.|+|++|+|||+||.+++.... . .+.|++.
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G---~---~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG---G---KDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH---T---TSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC---C---CEEEEEe
Confidence 4678999999999999999998721 1 2566766
No 233
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.00 E-value=0.00011 Score=62.40 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.-|.|+|++|+|||++|+.+++..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 447899999999999999997764
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.99 E-value=0.002 Score=71.25 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=71.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC---CCCe-EEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN---KFND-VIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~---~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (607)
.+-+.|+|++|+|||++|+.++........ ..+. ++.+++... +.... ...........+.+
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------------~~~~~-~~g~~e~~l~~~~~ 272 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LAGTK-YRGDFEKRFKALLK 272 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CCCC-CSSCHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------hcccc-ccchHHHHHHHHHH
Confidence 456789999999999999999988632110 1122 222222211 00000 01112223344444
Q ss_pred HHhcCCcEEEEEecCCCcc--------c---ccccccCCCCCCCCcEEEEEeCchhhhhh--------cccceeecccCC
Q 007339 81 MLKAKEKFVLILDDMWEAF--------P---LQEIGIPEPSEENGCKLVITTRLYRVCRS--------MKCKQVAVELLS 141 (607)
Q Consensus 81 ~~~~~~~~LlVlDdv~~~~--------~---~~~l~~~~~~~~~~~~IliTtR~~~~~~~--------~~~~~~~l~~L~ 141 (607)
.....++.+|+||+++... . ...+...+. ....++|.+|........ .....+.++..+
T Consensus 273 ~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~ 350 (758)
T 1r6b_X 273 QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPS 350 (758)
T ss_dssp HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCC
T ss_pred HHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCC
Confidence 4444567999999998662 1 111222222 234566666664432111 111237889999
Q ss_pred HHHHHHHhHhhh
Q 007339 142 KQEAFNLFIDGV 153 (607)
Q Consensus 142 ~~ea~~L~~~~~ 153 (607)
.++..+++....
T Consensus 351 ~~e~~~il~~l~ 362 (758)
T 1r6b_X 351 IEETVQIINGLK 362 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.95 E-value=0.0034 Score=59.69 Aligned_cols=123 Identities=14% Similarity=0.130 Sum_probs=68.8
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC--HHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD--LFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
++|+|++|+||||||+.++.... . ..++++.....+ ..+. ...+..+.+.....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~---~---~~i~i~g~~l~~~~~~~~------------------~~~i~~vf~~a~~~ 102 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESG---L---NFISVKGPELLNMYVGES------------------ERAVRQVFQRAKNS 102 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTT---C---EEEEEETTTTCSSTTHHH------------------HHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHcC---C---CEEEEEcHHHHhhhhhHH------------------HHHHHHHHHHHHhc
Confidence 89999999999999999998864 1 345555332211 0111 11223333333245
Q ss_pred CcEEEEEecCCCcccc-------------cccccCCCC--CCCCcEEEEEeCchhhhhhc-----ccce-eecccCCHHH
Q 007339 86 EKFVLILDDMWEAFPL-------------QEIGIPEPS--EENGCKLVITTRLYRVCRSM-----KCKQ-VAVELLSKQE 144 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~~-------------~~l~~~~~~--~~~~~~IliTtR~~~~~~~~-----~~~~-~~l~~L~~~e 144 (607)
.+.++++|+++..... ..+...+.. ......++.+|..+.+.... .... +.++.-+.++
T Consensus 103 ~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~ 182 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPAD 182 (274)
T ss_dssp CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence 6789999999754210 001111110 11233455666655543321 2233 7788888888
Q ss_pred HHHHhHhhhC
Q 007339 145 AFNLFIDGVG 154 (607)
Q Consensus 145 a~~L~~~~~~ 154 (607)
-.+++..+..
T Consensus 183 r~~il~~~~~ 192 (274)
T 2x8a_A 183 RLAILKTITK 192 (274)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 236
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.93 E-value=0.005 Score=60.82 Aligned_cols=155 Identities=8% Similarity=-0.045 Sum_probs=95.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.++..++|+.|.||++.+..++..... ..|+....+......++.++...+ .. .=.-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~----~~-----------------~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAA--QGFEEHHTFSIDPNTDWNAIFSLC----QA-----------------MSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHH--HTCCEEEEEECCTTCCHHHHHHHH----HH-----------------HHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHh--CCCCeeEEEEecCCCCHHHHHHHh----cC-----------------cCCc
Confidence 568899999999999999999887642 223322222222333333333221 10 0013
Q ss_pred CCcEEEEEecCCC-c--ccccccccCCCCCCCCcEEEEEeCc-------hhhhhhc--ccceeecccCCHHHHHHHhHhh
Q 007339 85 KEKFVLILDDMWE-A--FPLQEIGIPEPSEENGCKLVITTRL-------YRVCRSM--KCKQVAVELLSKQEAFNLFIDG 152 (607)
Q Consensus 85 ~~~~LlVlDdv~~-~--~~~~~l~~~~~~~~~~~~IliTtR~-------~~~~~~~--~~~~~~l~~L~~~ea~~L~~~~ 152 (607)
+++.++|+|+++. . ...+.+...+..-..++.+|+++.. ..+.... .+..++..+++.++..+.+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5688999999977 4 3344454444433446666666542 2233332 2233888999999999998888
Q ss_pred hCCCCCCCccchHHHHHHHHHHcCCchHHHHHH
Q 007339 153 VGSSILQVPILNKEIINEVVEECGCLPLAIVTV 185 (607)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~i~~~~~g~PLal~~~ 185 (607)
+......- .++.++.+++.++|....+...
T Consensus 155 ~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLNLEL---DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTTCEE---CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcCCCC---CHHHHHHHHHHhchHHHHHHHH
Confidence 75443333 6788999999999988766543
No 237
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.92 E-value=0.0042 Score=61.19 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=40.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHHc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKP---NKFNDVIWVTVSQPLDLFKLQTEIATALK 62 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 62 (607)
..++.|+|++|+|||+||.+++....... ..-..++|++....++...+.. ++..++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 46899999999999999999998743210 0234699999988777665543 344443
No 238
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.90 E-value=0.0019 Score=63.43 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC-----CcccccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE-----NEDKVRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 79 (607)
..++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++..... .....+....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 3589999999999999999999887532 1248899887766543 45556543211 111111222222
Q ss_pred HHHhcCCcEEEEEecCCCcc
Q 007339 80 GMLKAKEKFVLILDDMWEAF 99 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~~ 99 (607)
......+.-++|+|.+....
T Consensus 133 ~l~~~~~~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAALV 152 (356)
T ss_dssp HHHHTSCCSEEEEECTTTCC
T ss_pred HHhhhcCCCeEEehHhhhhc
Confidence 22224556689999986653
No 239
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.89 E-value=0.0025 Score=60.74 Aligned_cols=87 Identities=8% Similarity=-0.001 Sum_probs=57.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----Ccccccch-HHHHHH
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRP-GRLLGM 81 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~-~~l~~~ 81 (607)
++-|+|++|+||||||.+++...... ..-..++||+....++.. .++.++.+... .....+.+ ..+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 68999999999999999998887532 112358999988877643 36667654321 01111122 233333
Q ss_pred H---hcCCcEEEEEecCCCcc
Q 007339 82 L---KAKEKFVLILDDMWEAF 99 (607)
Q Consensus 82 ~---~~~~~~LlVlDdv~~~~ 99 (607)
+ .+++.-++|+|-+....
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCB
T ss_pred HHHhhccCceEEEEecccccc
Confidence 3 45678999999997764
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.84 E-value=0.0023 Score=62.59 Aligned_cols=93 Identities=13% Similarity=0.207 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC---------CCcccc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKP---NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP---------ENEDKV 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 72 (607)
..++.|+|++|+|||+||.+++....... ..-..++|++....++..++.+ +++.++.... ...+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 35899999999999999999998753220 0124699999988776665553 3455543210 000000
Q ss_pred ---cchHHHHHHHhc-CCcEEEEEecCCCc
Q 007339 73 ---RRPGRLLGMLKA-KEKFVLILDDMWEA 98 (607)
Q Consensus 73 ---~~~~~l~~~~~~-~~~~LlVlDdv~~~ 98 (607)
.....+...+.+ .+.-++|+|.+...
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 112233334434 66788999988544
No 241
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.83 E-value=0.0016 Score=61.37 Aligned_cols=146 Identities=10% Similarity=0.083 Sum_probs=75.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCCc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKEK 87 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (607)
+.|+|++|+||||||+.++.... ...+.++.. ++ ... .. ......+..+.+.......
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~------~~~i~~~~~------~~----~~~----~~--~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR------VPFITASGS------DF----VEM----FV--GVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHH------HH----HHS----CT--THHHHHHHHHHHHHTTSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC------CCEEEeeHH------HH----HHH----Hh--hHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999998864 123444321 11 100 00 0001122334444323456
Q ss_pred EEEEEecCCCccc----------------ccccccCCCCC--CCCcEEEEEeCchhhhhh-----cccce-eecccCCHH
Q 007339 88 FVLILDDMWEAFP----------------LQEIGIPEPSE--ENGCKLVITTRLYRVCRS-----MKCKQ-VAVELLSKQ 143 (607)
Q Consensus 88 ~LlVlDdv~~~~~----------------~~~l~~~~~~~--~~~~~IliTtR~~~~~~~-----~~~~~-~~l~~L~~~ 143 (607)
.++++|+++.... ...+...+... .....++.||..+..... ..... ++++..+.+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 189 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHH
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHH
Confidence 8999999964311 11121111111 122344555655444321 12333 788888888
Q ss_pred HHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 144 EAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 144 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+-.+++...+....... +.....+++.+.|.-
T Consensus 190 ~r~~il~~~~~~~~~~~----~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 190 GREQILRIHARGKPLAE----DVDLALLAKRTPGFV 221 (254)
T ss_dssp HHHHHHHHHHTTSCBCT----TCCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHcCCCCCc----ccCHHHHHHHcCCCC
Confidence 88888877664321111 122445777776653
No 242
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.82 E-value=0.0028 Score=62.01 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=56.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC-----------CCCC--CeEEEEEeCCCCCHHHHHHHHHHHHccCCC-----
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK-----------PNKF--NDVIWVTVSQPLDLFKLQTEIATALKQSLP----- 66 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~-----------~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----- 66 (607)
..++.|+|++|+|||+||.+++...... .... ..++|++....++..++.+ +++.++.+..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 4689999999999999999998763211 0111 4699999988777666654 3455543210
Q ss_pred ----CCcccc---cchHHHHHHHhc-CCcEEEEEecCCCc
Q 007339 67 ----ENEDKV---RRPGRLLGMLKA-KEKFVLILDDMWEA 98 (607)
Q Consensus 67 ----~~~~~~---~~~~~l~~~~~~-~~~~LlVlDdv~~~ 98 (607)
...+.. .....+.+.+.+ .+.-++|+|.+...
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 000000 122234444444 56678999988644
No 243
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.80 E-value=0.00095 Score=56.97 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
...++|+|+.|+|||+|++.++...... .+ .+++++...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~-~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA--GK-NAAYIDAAS 74 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT--TC-CEEEEETTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc--CC-cEEEEcHHH
Confidence 4578999999999999999999987532 22 266776544
No 244
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.80 E-value=0.0037 Score=58.25 Aligned_cols=93 Identities=15% Similarity=0.058 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCC---CCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC---------CCcccc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKP---NKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP---------ENEDKV 72 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 72 (607)
..+++|.|++|+|||||+..++....... ..-..++|++.........+. .+++.++.... ......
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 35899999999999999999998532110 113569999887755544433 33444432210 000000
Q ss_pred ---cchHHHHHHHhcCCcEEEEEecCCCc
Q 007339 73 ---RRPGRLLGMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 73 ---~~~~~l~~~~~~~~~~LlVlDdv~~~ 98 (607)
.....+.+.+...+.-++|+|.+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 11222334443457889999998654
No 245
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.73 E-value=0.0023 Score=61.21 Aligned_cols=146 Identities=10% Similarity=0.079 Sum_probs=76.6
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcCCc
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAKEK 87 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (607)
+.|+|++|+||||||+.++.... ...+.++.. ++. ... . ......+..+.+.......
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~------~~~i~~~~~------~~~----~~~----~--~~~~~~i~~~~~~~~~~~~ 133 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR------VPFITASGS------DFV----EMF----V--GVGAARVRDLFETAKRHAP 133 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHH------HHH----HST----T--THHHHHHHHHHHHHHTSCS
T ss_pred EEEECCCcChHHHHHHHHHHHcC------CCEEEecHH------HHH----HHH----h--hHHHHHHHHHHHHHHhcCC
Confidence 89999999999999999998864 124444421 111 000 0 0001122334444333456
Q ss_pred EEEEEecCCCccc----------------ccccccCCCCC--CCCcEEEEEeCchhhhhh-----cccce-eecccCCHH
Q 007339 88 FVLILDDMWEAFP----------------LQEIGIPEPSE--ENGCKLVITTRLYRVCRS-----MKCKQ-VAVELLSKQ 143 (607)
Q Consensus 88 ~LlVlDdv~~~~~----------------~~~l~~~~~~~--~~~~~IliTtR~~~~~~~-----~~~~~-~~l~~L~~~ 143 (607)
.++|+|+++.... +..+...+... .....++.+|..+..... ..... ++++..+.+
T Consensus 134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~ 213 (278)
T 1iy2_A 134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 213 (278)
T ss_dssp EEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred cEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHH
Confidence 8999999964310 11111111111 112334455554443221 12323 788888888
Q ss_pred HHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 144 EAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 144 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+-.+++..++....... +.....+++.+.|..
T Consensus 214 ~r~~il~~~~~~~~~~~----~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 214 GREQILRIHARGKPLAE----DVDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHHHHHHTTSCBCT----TCCHHHHHHTCTTCC
T ss_pred HHHHHHHHHHccCCCCc----ccCHHHHHHHcCCCC
Confidence 88888887764332111 122456777777764
No 246
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.73 E-value=0.00099 Score=61.76 Aligned_cols=38 Identities=29% Similarity=0.257 Sum_probs=29.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
.+++|.|++|+|||||++.++...... -..+.|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc
Confidence 589999999999999999999765422 12477777654
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.71 E-value=0.0054 Score=63.28 Aligned_cols=143 Identities=9% Similarity=0.114 Sum_probs=76.2
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHh---c
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLK---A 84 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~---~ 84 (607)
|.|+|++|+|||+||+.++.... ...+.++...-... . .......+...+. .
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~------~~~i~i~g~~~~~~--------------~-----~g~~~~~v~~lfq~a~~ 121 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR------VPFITASGSDFVEM--------------F-----VGVGAARVRDLFETAKR 121 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT------CCEEEEEGGGGTSS--------------C-----TTHHHHHHHHHTTTSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC------CCEEEEehhHHHHh--------------h-----hhhHHHHHHHHHHHHHh
Confidence 89999999999999999998864 12455554321110 0 0000111111111 1
Q ss_pred CCcEEEEEecCCCccc----------------ccccccCCCC--CCCCcEEEEEeCchhhhhh-----cccce-eecccC
Q 007339 85 KEKFVLILDDMWEAFP----------------LQEIGIPEPS--EENGCKLVITTRLYRVCRS-----MKCKQ-VAVELL 140 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~~-----~~~~~-~~l~~L 140 (607)
..+.++++|+++.... +..+...+.. ......|+.+|..+..... ..... +.++.-
T Consensus 122 ~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 122 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence 2357999999975421 1112111111 1223445556665544321 12222 778888
Q ss_pred CHHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 141 SKQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 141 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
+.++-.+++..++...... .+.....+++.+.|+.
T Consensus 202 d~~~R~~IL~~~~~~~~l~----~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 202 DVKGREQILRIHARGKPLA----EDVDLALLAKRTPGFV 236 (499)
T ss_dssp CHHHHHHHHHHTTSSSCCC----CSSTTHHHHTTSCSCC
T ss_pred CHHHHHHHHHHHHhcCCCC----hHHHHHHHHHhcCCCC
Confidence 8888888887766432111 1122456777777765
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.61 E-value=0.0013 Score=72.78 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=45.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
..+.++|++|+|||++|+.+++... ...+.++++....... +.+.++.+ ...........+...+...
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~------~~~~~i~~s~~~~~~~----~~~l~g~~--~g~~g~~~~~~l~~~~~~~ 556 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHT----VSRLIGAP--PGYVGFDQGGLLTDAVIKH 556 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT------CEEEEEEGGGCSSSSC----CSSSCCCC--SCSHHHHHTTHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc------CCEEEEechhhcchhh----HhhhcCCC--CCCcCccccchHHHHHHhC
Confidence 4789999999999999999999873 2356666654322100 00001111 0000001112233344446
Q ss_pred CcEEEEEecCCCc
Q 007339 86 EKFVLILDDMWEA 98 (607)
Q Consensus 86 ~~~LlVlDdv~~~ 98 (607)
...+++||+++..
T Consensus 557 ~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 557 PHAVLLLDEIEKA 569 (758)
T ss_dssp SSEEEEEETGGGS
T ss_pred CCcEEEEeCcccc
Confidence 6789999999866
No 249
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.58 E-value=0.004 Score=61.61 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----CcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 80 (607)
.+++.|.|++|+|||+||.+++...... -..++|++.....+.. .++.++.+... .....+......+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 3578999999999999999998886532 1359999998766533 24444432110 0111112222333
Q ss_pred HHh-cCCcEEEEEecCCCc
Q 007339 81 MLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 81 ~~~-~~~~~LlVlDdv~~~ 98 (607)
.+. .+..-++|+|.+...
T Consensus 146 ~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHTTTCCSEEEEECTTTC
T ss_pred HHHhcCCCCEEEEeChHHh
Confidence 332 355679999998655
No 250
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.54 E-value=0.0039 Score=61.44 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----CcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 80 (607)
.+++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++..... .....+....+.+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4689999999999999999999876532 2348999988765532 24455432111 0111112222333
Q ss_pred HHh-cCCcEEEEEecCCCc
Q 007339 81 MLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 81 ~~~-~~~~~LlVlDdv~~~ 98 (607)
.+. ..+.-++|+|.+...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 232 445679999998654
No 251
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.52 E-value=0.0038 Score=62.63 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=83.8
Q ss_pred chhhhcCCCCceEEEccCCCCccCC-ccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccCC
Q 007339 347 PECFFVHMNGLKVLNLSHTDIEVLP-SSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEML 423 (607)
Q Consensus 347 ~~~~~~~l~~L~~L~l~~~~~~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l 423 (607)
....|..+.+|+.+.+..+ +..+. ..+..+..|+.+.+..+ ...... .+.++.+|+.+.+..+ +..++. .+..|
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence 3445667777877777654 33332 35667777887777643 222222 6777778888877643 555554 46777
Q ss_pred CCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcchhhhhHHHhhcccccccEEEee
Q 007339 424 ENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAASLSDGLDYFEGC 482 (607)
Q Consensus 424 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~ 482 (607)
.+|+.+.+.++.++.++...|.+|.+|+.+.+..+ . .......|..+. +|+.+.+.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l-~~I~~~aF~~C~-~L~~i~ip 341 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-L-KTIQVYAFKNCK-ALSTISYP 341 (379)
T ss_dssp TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTCT-TCCCCCCC
T ss_pred cccccccccccccceehhhhhcCCCCCCEEEcCcc-c-cEEHHHHhhCCC-CCCEEEEC
Confidence 88888888877787777777888888888888643 1 111223466667 77776664
No 252
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.45 E-value=0.0036 Score=60.63 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc-cCCCCCCeEEEEEe
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ-EKPNKFNDVIWVTV 44 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~-~~~~~f~~~~wv~~ 44 (607)
.+.+.|+|++|+|||+||..+++... .+ .+ .+.++.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~--g~-~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKK--GV-STTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHS--CC-CEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhc--CC-cEEEEEH
Confidence 46789999999999999999999875 33 22 3566654
No 253
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.44 E-value=0.0041 Score=61.35 Aligned_cols=86 Identities=16% Similarity=0.217 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----CcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 80 (607)
.+++.|.|.+|+||||||.+++...... -..++|++.....+.. .++.++..... ..+..+....+.+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3589999999999999999999886532 1258999988766532 24445432110 0011112222333
Q ss_pred HH-hcCCcEEEEEecCCCc
Q 007339 81 ML-KAKEKFVLILDDMWEA 98 (607)
Q Consensus 81 ~~-~~~~~~LlVlDdv~~~ 98 (607)
.+ .....-++|+|.+...
T Consensus 135 ~l~~~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAAL 153 (356)
T ss_dssp HHHHHTCCSEEEEECGGGC
T ss_pred HHHhccCCCEEEEcCHHHh
Confidence 22 2355669999998654
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.37 E-value=0.0098 Score=66.44 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=29.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
..+.|+|++|+|||++|+.++...... -...+.++++..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i~i~~~~~ 627 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEY 627 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEECTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhc
Confidence 578999999999999999999887421 122566666553
No 255
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.36 E-value=0.001 Score=60.72 Aligned_cols=110 Identities=15% Similarity=0.030 Sum_probs=62.0
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHH
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGML 82 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~ 82 (607)
....++.|+|+.|+||||++..++.+.... ... +..+...... . ....++..++...... . ......+.+.+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~k-Vli~~~~~d~--r-~~~~i~srlG~~~~~~-~-~~~~~~i~~~i 81 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA--DVK-YLVFKPKIDT--R-SIRNIQSRTGTSLPSV-E-VESAPEILNYI 81 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCC-EEEEEECCCG--G-GCSSCCCCCCCSSCCE-E-ESSTHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCE-EEEEEeccCc--h-HHHHHHHhcCCCcccc-c-cCCHHHHHHHH
Confidence 345789999999999999999999998633 222 4444433321 1 1223444444332211 1 12233455544
Q ss_pred hc----CCcEEEEEecCCCcc--cccccccCCCCCCCCcEEEEEeCc
Q 007339 83 KA----KEKFVLILDDMWEAF--PLQEIGIPEPSEENGCKLVITTRL 123 (607)
Q Consensus 83 ~~----~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~IliTtR~ 123 (607)
.. ++.-++|+|.++... .++.+. .+.. .+..||+|.+.
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 33 345599999997652 222222 2222 26789999984
No 256
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.35 E-value=0.0032 Score=60.97 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=33.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
++.++|+|+|-|||||||.|..++.-+...+. .|.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk---kVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGK---RVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCC---eEEEEecCC
Confidence 47899999999999999999999888865422 388888764
No 257
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.35 E-value=0.011 Score=57.30 Aligned_cols=51 Identities=8% Similarity=0.051 Sum_probs=38.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATA 60 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 60 (607)
..++.|.|.+|+||||+|.+++.....+ + ..++|++... +..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~-g--~~vl~~slE~--s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDN-D--DVVNLHSLEM--GKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTT-T--CEEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc-C--CeEEEEECCC--CHHHHHHHHHHH
Confidence 4689999999999999999999886533 2 5689998774 455665555544
No 258
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.34 E-value=0.0047 Score=60.45 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
...++|+|++|+|||||++.++.....+...+. ++++-+.+.
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER 215 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDER 215 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCC
Confidence 457899999999999999999887643222333 445666654
No 259
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.27 E-value=0.01 Score=57.13 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
+...+|+|+|++|+||||++..++..+... -..+.+++...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~ 142 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADT 142 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEcccc
Confidence 346799999999999999999999888632 12377777654
No 260
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.27 E-value=0.0023 Score=56.49 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+|.|.|++|+||||+|+.++....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999999874
No 261
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.27 E-value=0.0037 Score=51.79 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=45.3
Q ss_pred CEEeccCCchh--hhHHhccCCCCCCeeeccCCcCCcCCCccccCCCCCCEEEcccCcc
Q 007339 404 QYLDLEGTWIE--EVLECMEMLENLSHLYLSSLQLKKFPTGILPRLRNLYKLKLSFGNE 460 (607)
Q Consensus 404 ~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~ 460 (607)
..++-++++++ .+|..+- ++|+.|+|++|+++.++.+.|..+++|+.|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36777888887 8876432 5799999999999999999889999999999998753
No 262
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.25 E-value=0.013 Score=53.84 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=32.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC---CCCCCeEEEEEeCCCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK---PNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~ 49 (607)
..+++|.|++|+|||||++.++...... ......++|++......
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 3689999999999999999998744321 11234588888765444
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.24 E-value=0.012 Score=58.89 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=53.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC---CCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCC---------CCc---
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK---PNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLP---------ENE--- 69 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~--- 69 (607)
..++.|.|++|+|||||+.+++-..... +..-..++|++....+....+. .+++.++.... ...
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 3589999999999999999886443221 1123459999887765544433 35555543210 000
Q ss_pred ccccchHHHHHHHhcCCcEEEEEecCCCc
Q 007339 70 DKVRRPGRLLGMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 70 ~~~~~~~~l~~~~~~~~~~LlVlDdv~~~ 98 (607)
.......++...+...+.-++|+|.+...
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 01112223333343457788999987543
No 264
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.19 E-value=0.0053 Score=66.83 Aligned_cols=148 Identities=11% Similarity=0.127 Sum_probs=66.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+-|.++|++|+|||.+|++++.... .-++.++. .+ ++ ..... .....+.++.+.....
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~--------~~f~~v~~----~~----l~----s~~vG--ese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQ--------ANFISIKG----PE----LL----TMWFG--ESEANVREIFDKARQA 569 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTT--------CEEEECCH----HH----HH----TTTCS--SCHHHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHhC--------CceEEecc----ch----hh----ccccc--hHHHHHHHHHHHHHHc
Confidence 3478999999999999999999975 22333321 11 11 11111 1123456666666677
Q ss_pred CcEEEEEecCCCccc----------------ccccccCCCC--CCCCcEEEEEeCchhhhh----hc-ccce-eecccCC
Q 007339 86 EKFVLILDDMWEAFP----------------LQEIGIPEPS--EENGCKLVITTRLYRVCR----SM-KCKQ-VAVELLS 141 (607)
Q Consensus 86 ~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~~~~IliTtR~~~~~~----~~-~~~~-~~l~~L~ 141 (607)
.+++|+||+++.... +.++...+.. ...+.-||-||..+.... +. +... +.+..-+
T Consensus 570 ~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd 649 (806)
T 3cf2_A 570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC----
T ss_pred CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcC
Confidence 899999999986521 1112111111 112323333444222211 11 2222 6666556
Q ss_pred HHHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 142 KQEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 142 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
.++-.++|..++....... +...+.+++.+.|+-
T Consensus 650 ~~~R~~il~~~l~~~~~~~----~~dl~~la~~t~g~S 683 (806)
T 3cf2_A 650 EKSRVAILKANLRKSPVAK----DVDLEFLAKMTNGFS 683 (806)
T ss_dssp -CHHHHTTTTTSSCC--CC----C--------------
T ss_pred HHHHHHHHHHHhcCCCCCC----CCCHHHHHHhCCCCC
Confidence 6666777777665442221 123556777777653
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.18 E-value=0.0026 Score=56.55 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+.|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998864
No 266
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.17 E-value=0.0026 Score=55.73 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+|+|.|++|+||||+|+.++..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998864
No 267
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.13 E-value=0.0033 Score=57.10 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=25.2
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....++|+|.|+.|+||||+++.++..+.
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34567999999999999999999998864
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.11 E-value=0.0088 Score=57.39 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
...++|+|.|++|+||||++..++..+... .. ..+..++...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G-~~V~lv~~D~ 144 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE-KH-KKIAFITTDT 144 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT-TC-CCEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh-cC-CEEEEEecCc
Confidence 346799999999999999999999887532 11 1367776654
No 269
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.06 E-value=0.011 Score=56.69 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=49.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHH-HHHHHHHHHHccCCCC---CcccccchHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLF-KLQTEIATALKQSLPE---NEDKVRRPGRLL 79 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 79 (607)
..++++|.|++|+||||++..++..+... -..+.+++........ .-+..+....+.+... ..+.........
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999999999887633 1237777765433211 1122344444433221 111112222333
Q ss_pred HHHhcCCcEEEEEecC
Q 007339 80 GMLKAKEKFVLILDDM 95 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv 95 (607)
+.......=++|+|--
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 4332233457788865
No 270
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.97 E-value=0.016 Score=63.92 Aligned_cols=148 Identities=11% Similarity=0.114 Sum_probs=78.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
.+.|.|+|++|+||||||+.++.... .. .+.++... +.... ..........+.+....
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~---~~---~i~v~~~~--------------l~~~~--~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETG---AF---FFLINGPE--------------IMSKL--AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTT---CE---EEEEEHHH--------------HSSSS--TTHHHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC---Cc---EEEEEchH--------------hhhhh--hhhHHHHHHHHHHHHHh
Confidence 45689999999999999999998864 11 34444311 11100 01111223334444444
Q ss_pred CCcEEEEEecCCCccc-------------ccccc---cCCCCCCCCcEEEEEeCchhhhh-hc----ccce-eecccCCH
Q 007339 85 KEKFVLILDDMWEAFP-------------LQEIG---IPEPSEENGCKLVITTRLYRVCR-SM----KCKQ-VAVELLSK 142 (607)
Q Consensus 85 ~~~~LlVlDdv~~~~~-------------~~~l~---~~~~~~~~~~~IliTtR~~~~~~-~~----~~~~-~~l~~L~~ 142 (607)
....++++|+++.... ...+. .... ......+|.||....... .. .... +.+...+.
T Consensus 296 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCH
T ss_pred cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHHhcccccccccccCCCCH
Confidence 5678999999964421 01111 1111 123445666665432221 11 2222 67788888
Q ss_pred HHHHHHhHhhhCCCCCCCccchHHHHHHHHHHcCCch
Q 007339 143 QEAFNLFIDGVGSSILQVPILNKEIINEVVEECGCLP 179 (607)
Q Consensus 143 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 179 (607)
++-.+++...+....... ......+++.+.|..
T Consensus 375 ~~r~~il~~~~~~~~l~~----~~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 375 TGRLEILQIHTKNMKLAD----DVDLEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHHTTTTSCCCT----TCCTHHHHHSCSSCC
T ss_pred HHHHHHHHHHHhcCCCcc----cchhHHHHHhhcCcc
Confidence 888888887765432221 112344556665553
No 271
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.96 E-value=0.011 Score=59.53 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVS 45 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 45 (607)
..++|.+.|++|+||||++..++..+..+ .. .+..+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~--G~-kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR--GY-KVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TC-CEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC--CC-eEEEEeCC
Confidence 47899999999999999999999888643 22 25555543
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.96 E-value=0.0036 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.+|+|.|++|+||||+|+.+ ..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 273
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.94 E-value=0.0034 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
|.|.|.||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 6789999999999999999988754
No 274
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.93 E-value=0.004 Score=56.08 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|+|.|++|+||||+|+.++..+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998873
No 275
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.92 E-value=0.0045 Score=54.58 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 007339 6 SKIGVWGMGGIGKTTIMSHINN 27 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~ 27 (607)
.+|.|.|++|+||||+|+.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999988
No 276
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.88 E-value=0.01 Score=59.52 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=51.1
Q ss_pred cccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCchhhhHH-hccCCCCCCeeeccCCcCCcCCCccccCCCCC
Q 007339 373 SISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWIEEVLE-CMEMLENLSHLYLSSLQLKKFPTGILPRLRNL 450 (607)
Q Consensus 373 ~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~l~~L 450 (607)
.+..+.+|+.+.+..+ ...... .+.++..|+.+.+..+ ++.+.. .+.++.+|+.+.+.. +++.++...|.++.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence 3445555555555432 111112 4555666666666543 444432 345556666666543 3455555555666666
Q ss_pred CEEEcccCcchhhhhHHHhhcccccccEEEee
Q 007339 451 YKLKLSFGNEALRETVEEAASLSDGLDYFEGC 482 (607)
Q Consensus 451 ~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~l~ 482 (607)
+.+.+..+.... .....|..+. +|+.+.+.
T Consensus 289 ~~i~l~~~~i~~-I~~~aF~~c~-~L~~i~lp 318 (379)
T 4h09_A 289 TKVVMDNSAIET-LEPRVFMDCV-KLSSVTLP 318 (379)
T ss_dssp CEEEECCTTCCE-ECTTTTTTCT-TCCEEECC
T ss_pred ccccccccccce-ehhhhhcCCC-CCCEEEcC
Confidence 666665432211 1113345555 66666553
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.88 E-value=0.0048 Score=55.02 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+|+|.|++|+||||+++.++...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 35689999999999999999998864
No 278
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.86 E-value=0.02 Score=57.98 Aligned_cols=91 Identities=15% Similarity=0.297 Sum_probs=51.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHH--Hc------cCCCCCccccc---
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATA--LK------QSLPENEDKVR--- 73 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~--l~------~~~~~~~~~~~--- 73 (607)
..++|+|.+|+|||||+..++...... ..+.++++.+.+.. +..++.+.+... +. ...........
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 458999999999999999998876432 22335666666553 234444444321 00 01111000000
Q ss_pred -chHHHHHHHh--cCCcEEEEEecCCCc
Q 007339 74 -RPGRLLGMLK--AKEKFVLILDDMWEA 98 (607)
Q Consensus 74 -~~~~l~~~~~--~~~~~LlVlDdv~~~ 98 (607)
....+.+.+. +++++|+++|++...
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~itR~ 257 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIFRF 257 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0113344443 589999999998543
No 279
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.86 E-value=0.004 Score=56.23 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+|+|.|++|+||||+|+.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999886
No 280
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.85 E-value=0.0053 Score=55.37 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=23.9
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHHhh
Q 007339 1 MDDKVSKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 1 ~~~~~~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
+++...+|+|.|+.|+||||+|+.++..
T Consensus 4 ~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 4 EAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 3566789999999999999999999875
No 281
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.84 E-value=0.023 Score=57.61 Aligned_cols=43 Identities=28% Similarity=0.339 Sum_probs=32.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
...++|.|+|.+|+||||++..++..+..+ ... .+.-+++...
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~-kVllvd~D~~ 140 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK-HKK-KVLVVSADVY 140 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT-SCC-CEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh-cCC-eEEEEecCCC
Confidence 346899999999999999999999988643 122 3777777643
No 282
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.84 E-value=0.0064 Score=60.93 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+.|+|++|+|||++|+.+++...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999998873
No 283
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.84 E-value=0.0051 Score=54.92 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+|.|.|++|+||||+|+.++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999876
No 284
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.83 E-value=0.0046 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=23.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+|+|.|++|+||||+|+.++..+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.82 E-value=0.0054 Score=55.23 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....+|+|.|++|+||||+|+.++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999998875
No 286
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.81 E-value=0.0052 Score=54.28 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++++|.|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988753
No 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.80 E-value=0.0041 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+|+|.|++|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998863
No 288
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.78 E-value=0.0066 Score=54.76 Aligned_cols=27 Identities=37% Similarity=0.372 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
....+|+|.|++|+||||+|+.++..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999876
No 289
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.76 E-value=0.0059 Score=55.42 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..++|.|.|++|+||||.|+.++..+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 568999999999999999999999874
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.75 E-value=0.0049 Score=54.94 Aligned_cols=25 Identities=28% Similarity=0.358 Sum_probs=23.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999875
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.74 E-value=0.0045 Score=54.68 Aligned_cols=26 Identities=31% Similarity=0.426 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|.|.|++|+||||+|+.++..+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998863
No 292
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.74 E-value=0.025 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.147 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
+..|+|.+|.|||++|.......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999998875553
No 293
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.71 E-value=0.02 Score=54.86 Aligned_cols=89 Identities=17% Similarity=0.106 Sum_probs=51.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC-HHHHHHHHHHHHccCCCCC---cccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD-LFKLQTEIATALKQSLPEN---EDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 80 (607)
..+|++.|++|+||||++..++..+... -..+.+++...... ....+....+..+.+.... .+.........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 6789999999999999999999887633 12377777664433 2222334444444432221 112222233444
Q ss_pred HHhcCCcEEEEEecCC
Q 007339 81 MLKAKEKFVLILDDMW 96 (607)
Q Consensus 81 ~~~~~~~~LlVlDdv~ 96 (607)
.+..+.-=++|+|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 4432333378888653
No 294
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.66 E-value=0.0052 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.554 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..++|+|.|++|+||||+++.++...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999876
No 295
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.65 E-value=0.029 Score=54.53 Aligned_cols=51 Identities=14% Similarity=0.060 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATA 60 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 60 (607)
..++.|.|.+|+||||+|.+++...... -..+.|++..- +..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSlEm--s~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSLEM--SAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCC--CHHHHHHHHHHH
Confidence 3589999999999999999999887532 23588887754 355555555443
No 296
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.65 E-value=0.006 Score=57.22 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
++|+|.|++|+||||+|+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998863
No 297
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.65 E-value=0.029 Score=55.21 Aligned_cols=45 Identities=22% Similarity=0.374 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccC--CCCC-CeEEEEEeCCCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEK--PNKF-NDVIWVTVSQPLD 49 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~--~~~f-~~~~wv~~~~~~~ 49 (607)
..++.|+|++|+|||||+..++...... .... ..++|++....+.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 4689999999999999999999876321 0111 2468998776543
No 298
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.62 E-value=0.0064 Score=54.43 Aligned_cols=27 Identities=37% Similarity=0.271 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|++|+||||+|+.++..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998763
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.61 E-value=0.0064 Score=54.76 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+|+|.|+.|+||||+++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998876
No 300
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.61 E-value=0.0063 Score=53.00 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|+.|+||||+|+.++..+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999999864
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.56 E-value=0.0085 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+|+|.|+.|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 302
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.56 E-value=0.0054 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+.|+|.|++|+||||+|+.++..+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998864
No 303
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.56 E-value=0.0078 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
...|+|+|+.|+||||+|+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999987
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.55 E-value=0.023 Score=57.33 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=31.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
...++|.+.|++|+||||++..++..++.+ .. .+..+++..
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~-kVllv~~D~ 135 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKR--GY-KVGLVAADV 135 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHT--TC-CEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CC-eEEEEecCc
Confidence 346899999999999999999999888643 22 356666543
No 305
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.55 E-value=0.005 Score=54.55 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
++|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4699999999999999999998864
No 306
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.54 E-value=0.0078 Score=53.60 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..++|+|.|++|+|||||++.++..+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999998754
No 307
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.53 E-value=0.0074 Score=53.93 Aligned_cols=26 Identities=31% Similarity=0.224 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 308
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.53 E-value=0.0077 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+|+|.|++|+||||+|+.++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 309
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.49 E-value=0.0069 Score=54.35 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||+|+.++..+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999863
No 310
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.48 E-value=0.02 Score=50.81 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=33.1
Q ss_pred hcCCCCceEEEccCC-CCc-----cCCccccCCccCcEeecccccCCCCCC-----cccCCCCCCEEeccCCchh
Q 007339 351 FVHMNGLKVLNLSHT-DIE-----VLPSSISDLTNLRSLLLRWCGRLKRVP-----SLAKLLALQYLDLEGTWIE 414 (607)
Q Consensus 351 ~~~l~~L~~L~l~~~-~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~l~~L~~L~l~~~~l~ 414 (607)
+.+-+.|+.|++++| .|. .+-..+..-..|+.|+|++|.+..... .+..-+.|++|+|++|.|.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 445567777777764 554 122334455566666666665432111 1233345555555555444
No 311
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.47 E-value=0.008 Score=54.24 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 312
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.46 E-value=0.0068 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
++++|.|+.|+|||||++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999997764
No 313
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.45 E-value=0.008 Score=54.48 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+...+|+|.|+.|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999988875
No 314
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.44 E-value=0.0063 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
++|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999998864
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.44 E-value=0.0088 Score=54.27 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 36899999999999999999999875
No 316
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.43 E-value=0.0077 Score=52.11 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+..++++|.|+.|+||||++..++..++
T Consensus 2 ~~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 2 NAMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3467899999999999999999998875
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.42 E-value=0.008 Score=54.18 Aligned_cols=24 Identities=46% Similarity=0.732 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|+|.|+.|+||||+|+.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999874
No 318
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.37 E-value=0.0097 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||+|+.++..+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999998863
No 319
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.37 E-value=0.0094 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+|+|.|++|+||||+++.++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998876
No 320
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.35 E-value=0.0089 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998763
No 321
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.35 E-value=0.0086 Score=55.91 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|+.|+||||+++.++..+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997763
No 322
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.34 E-value=0.011 Score=52.45 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
...+|+|.|++|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999998753
No 323
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.33 E-value=0.043 Score=55.39 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=55.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccC------C------CCCccc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQS------L------PENEDK 71 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~------~~~~~~ 71 (607)
...++|.|.+|+|||+|+.+++..... ++-+.++++-+.+.. ...++.+.+...=... . ....+.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~--~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAK--AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTT--TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHh--hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCH
Confidence 356899999999999999999988632 334557777777653 3455666655432111 0 000110
Q ss_pred c------cchHHHHHHHh--cCCcEEEEEecCCCc
Q 007339 72 V------RRPGRLLGMLK--AKEKFVLILDDMWEA 98 (607)
Q Consensus 72 ~------~~~~~l~~~~~--~~~~~LlVlDdv~~~ 98 (607)
. .....+.++++ .++++|+++||+...
T Consensus 231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~ 265 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRF 265 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0 11222334443 489999999998544
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.32 E-value=0.01 Score=52.84 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
.+++|.|+.|+||||+++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999863
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.30 E-value=0.011 Score=53.50 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+|+|.|++|+||||+|+.++..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998865
No 326
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.30 E-value=0.024 Score=50.28 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=69.9
Q ss_pred ccCCccCcEeecccccCCCCC-----C-cccCCCCCCEEeccCCchh-----hhHHhccCCCCCCeeeccCCcCCcCCC-
Q 007339 374 ISDLTNLRSLLLRWCGRLKRV-----P-SLAKLLALQYLDLEGTWIE-----EVLECMEMLENLSHLYLSSLQLKKFPT- 441 (607)
Q Consensus 374 ~~~l~~L~~L~l~~~~~~~~~-----~-~~~~l~~L~~L~l~~~~l~-----~l~~~~~~l~~L~~L~l~~~~l~~~~~- 441 (607)
+..-+.|+.|+|++++.+... . .+..-..|+.|+|++|.+. .+.+.+..-+.|+.|+|+.|.+..-..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445677888888875323221 1 3556678888999888776 233445566788888888888764221
Q ss_pred ---ccccCCCCCCEEEcccCcc--hhhh----hHHHhhcccccccEEEeeecCc
Q 007339 442 ---GILPRLRNLYKLKLSFGNE--ALRE----TVEEAASLSDGLDYFEGCFSKL 486 (607)
Q Consensus 442 ---~~~~~l~~L~~L~l~~~~~--~~~~----~~~~l~~l~~~L~~L~l~~~~~ 486 (607)
..+..-+.|++|+|++|.. .... ..+.+..-+ .|+.|+++++..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~-tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-SLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-SCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCC-CcCeEeccCCCc
Confidence 1245556688888875421 1221 224555566 788888876654
No 327
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.29 E-value=0.06 Score=54.13 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=31.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
..++|+|.|++|+||||++..++..+... -..+..+++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeeccc
Confidence 46789999999999999999999988633 22366676643
No 328
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.28 E-value=0.0095 Score=54.52 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....|+|.|++|+||||+|+.++..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999999864
No 329
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.28 E-value=0.044 Score=56.01 Aligned_cols=52 Identities=15% Similarity=-0.003 Sum_probs=37.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATA 60 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 60 (607)
..++.|.|.+|+|||++|.+++...... . -..++|++... +..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~-g~~vl~~slE~--~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-E-GVGVGIYSLEM--PAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-T-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-C-CCeEEEEECCC--CHHHHHHHHHHH
Confidence 4589999999999999999999887532 1 12488888764 355666655543
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.27 E-value=0.0066 Score=53.67 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=19.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998864
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.27 E-value=0.0097 Score=51.73 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 332
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.27 E-value=0.011 Score=55.78 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|.|.|++|+||||+|+.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998753
No 333
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.26 E-value=0.02 Score=55.17 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|+|.|+.|+||||||..++..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999863
No 334
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.25 E-value=0.011 Score=55.39 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|++|+||||+|+.++..+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999988754
No 335
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.25 E-value=0.011 Score=53.77 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|+.|+|||||++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988764
No 336
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.24 E-value=0.012 Score=55.17 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|+.|+||||+++.++..+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999998763
No 337
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.23 E-value=0.01 Score=53.94 Aligned_cols=26 Identities=23% Similarity=0.182 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999875
No 338
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.22 E-value=0.01 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|+|.|+.|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.21 E-value=0.01 Score=56.70 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+|.|.|++|+||||+|+.++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 340
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.21 E-value=0.012 Score=56.20 Aligned_cols=44 Identities=23% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
+...+|+|.|++|+||||||+.++..+...+.....+..|....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~ 72 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDD 72 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccc
Confidence 34678999999999999999999888753211122344445544
No 341
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.21 E-value=0.01 Score=53.90 Aligned_cols=26 Identities=23% Similarity=0.134 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998875
No 342
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.20 E-value=0.0099 Score=54.64 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+|+|.|++|+||||+|+.++..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998876
No 343
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.19 E-value=0.0053 Score=58.81 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=27.6
Q ss_pred CCCCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 1 MDDKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 1 ~~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
|+....+|+|.|+.|+||||+|+.+...+... .+ .+..++...
T Consensus 1 Ms~~~~iIgItG~sGSGKSTva~~L~~~lg~~--~~-~~~vI~~D~ 43 (290)
T 1a7j_A 1 MSKKHPIISVTGSSGAGTSTVKHTFDQIFRRE--GV-KAVSIEGDA 43 (290)
T ss_dssp -CTTSCEEEEESCC---CCTHHHHHHHHHHHH--TC-CEEEEEGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHhhc--CC-CeeEeecch
Confidence 45567799999999999999999998875421 12 145566544
No 344
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.17 E-value=0.012 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.218 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+|+|.|+.|+||||+|+.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 345
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.17 E-value=0.019 Score=55.75 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=23.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
++|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999999863
No 346
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.15 E-value=0.012 Score=53.26 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 007339 6 SKIGVWGMGGIGKTTIMSHINN 27 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~ 27 (607)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 347
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.14 E-value=0.021 Score=67.98 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----Cccc-ccchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDK-VRRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~-~~~~~~l~ 79 (607)
.+.|.|+|++|+|||+||.+++...... =..+.|+++....+... ++.++.+... ..+. ......+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 5689999999999999999998876532 12488898887765444 4555532211 1111 12222333
Q ss_pred HHHhcCCcEEEEEecCCCc
Q 007339 80 GMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~ 98 (607)
+...+.+..++|+|.+.-.
T Consensus 1499 ~lvr~~~~~lVVIDsi~al 1517 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVAAL 1517 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHhcCCCCEEEEcChhHh
Confidence 3334577889999999633
No 348
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.14 E-value=0.024 Score=54.86 Aligned_cols=44 Identities=25% Similarity=0.359 Sum_probs=33.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 49 (607)
...++|+|+|-||+||||+|..++..+...+ . .+.-|++....+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~-~VlliD~D~~~~ 82 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--K-RVLQIGCDPKHD 82 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--C-CEEEEEESSSCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCC--C-eEEEEeCCCCCC
Confidence 3568899999999999999999999886542 2 488888765443
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.13 E-value=0.011 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 007339 6 SKIGVWGMGGIGKTTIMSHINN 27 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~ 27 (607)
.+|+|.|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999988
No 350
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.13 E-value=0.011 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHIN 26 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~ 26 (607)
...+++|.|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 35689999999999999999643
No 351
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.13 E-value=0.011 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988863
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.12 E-value=0.012 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988763
No 353
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.11 E-value=0.011 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|+|.|+.|+||||+|+.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 354
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.11 E-value=0.011 Score=54.39 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||+|+.++..+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 355
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.10 E-value=0.014 Score=51.89 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+|+|+|+.|+||||+|+.++..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999874
No 356
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.10 E-value=0.013 Score=54.57 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....|+|.|++|+||||+|+.++..+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998763
No 357
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.09 E-value=0.012 Score=51.73 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|.|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999987764
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.06 E-value=0.014 Score=52.50 Aligned_cols=27 Identities=26% Similarity=0.451 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|++|+||||+++.++..+.
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999988764
No 359
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.05 E-value=0.0061 Score=53.88 Aligned_cols=116 Identities=18% Similarity=0.095 Sum_probs=60.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHcc-------CCC-CCccc------
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQ-------SLP-ENEDK------ 71 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-------~~~-~~~~~------ 71 (607)
..|.|++..|.||||.|..++-+.-. +.+. +.++.+-... ...-...+++.+.. ... ...+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--~G~r-V~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--HGKN-VGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--TTCC-EEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--CCCe-EEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 35666666779999999999888752 3343 5555443321 11122223333320 000 01110
Q ss_pred -ccchHHHHHHHhcCCcEEEEEecCCCc-----ccccccccCCCCCCCCcEEEEEeCchh
Q 007339 72 -VRRPGRLLGMLKAKEKFVLILDDMWEA-----FPLQEIGIPEPSEENGCKLVITTRLYR 125 (607)
Q Consensus 72 -~~~~~~l~~~~~~~~~~LlVlDdv~~~-----~~~~~l~~~~~~~~~~~~IliTtR~~~ 125 (607)
........+.+.+++-=|+|||++... ...+++...+........||+|+|..+
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 011222233333456679999998432 333344444444445678999999653
No 360
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.03 E-value=0.0099 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.++++|.|+.|+|||||++.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 361
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.01 E-value=0.074 Score=55.37 Aligned_cols=51 Identities=10% Similarity=-0.020 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIAT 59 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 59 (607)
..++.|.|.+|+|||++|.+++.....+ .-..+.|++.... ..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~s--~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEES--VEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSSC--HHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccCC--HHHHHHHHHH
Confidence 4578999999999999999999887532 1124888887653 5566655543
No 362
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.01 E-value=0.048 Score=55.29 Aligned_cols=91 Identities=18% Similarity=0.269 Sum_probs=56.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccC-------C------CCCccc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQS-------L------PENEDK 71 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~------~~~~~~ 71 (607)
..++|.|.+|+|||+|+.++++.... ++-+.++++-+.+.. ...++.+++...=... . ....+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~--~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAK--AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTT--TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHh--hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 45799999999999999999998642 334567888887654 3556666665431111 0 000000
Q ss_pred c------cchHHHHHHHh--cCCcEEEEEecCCCc
Q 007339 72 V------RRPGRLLGMLK--AKEKFVLILDDMWEA 98 (607)
Q Consensus 72 ~------~~~~~l~~~~~--~~~~~LlVlDdv~~~ 98 (607)
. .....+.++++ .++++|+++||+...
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~ 278 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRF 278 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence 0 11223344444 489999999998543
No 363
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.99 E-value=0.019 Score=55.25 Aligned_cols=27 Identities=33% Similarity=0.474 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|++|+||||+++.++..++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999998875
No 364
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.96 E-value=0.011 Score=54.10 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999999874
No 365
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.96 E-value=0.028 Score=53.49 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|+|.|+.|+|||+||..++..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999998863
No 366
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.94 E-value=0.083 Score=51.27 Aligned_cols=57 Identities=23% Similarity=0.207 Sum_probs=36.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC-CCHHHHHHHHHHHHc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP-LDLFKLQTEIATALK 62 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~ 62 (607)
....+++|.|+.|+||||+++.++..++.. -..+.++..... ....+-+....+.++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcC
Confidence 356799999999999999999999887532 123666654432 223333344444444
No 367
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.90 E-value=0.018 Score=49.37 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+++|.|+.|+|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999998876
No 368
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.88 E-value=0.017 Score=55.09 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=21.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHh
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINN 27 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~ 27 (607)
....+|+|.|+.|+||||+|+.++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999983
No 369
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.87 E-value=0.016 Score=55.25 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|+|.|+.|+|||+||..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 46899999999999999999998863
No 370
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.87 E-value=0.015 Score=52.45 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|.|.|++|+||||.|+.++..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999874
No 371
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.85 E-value=0.017 Score=53.82 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+|+|.|+.|+|||||++.++...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 372
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.83 E-value=0.018 Score=52.30 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|+.|+||||+|+.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 356899999999999999999998764
No 373
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.81 E-value=0.016 Score=52.44 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+++|.|+.|+|||||++.++....
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999988753
No 374
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.81 E-value=0.026 Score=57.10 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
....+|.|.|++|+||||+|+.++.+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999998875
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.80 E-value=0.018 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|+.|+||||+++.++..+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998764
No 376
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.79 E-value=0.017 Score=52.59 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+++|.|+.|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356899999999999999999988754
No 377
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.78 E-value=0.017 Score=55.75 Aligned_cols=42 Identities=26% Similarity=0.206 Sum_probs=30.2
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVS 45 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~ 45 (607)
....+|+|.|+.|+|||||++.++.-.... ..-..+.++...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~-~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARW-DHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTS-TTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcccc-CCCCeEEEEecC
Confidence 345789999999999999999998876421 111236666644
No 378
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.78 E-value=0.014 Score=51.86 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+.+.|+|++|+|||++|..+++...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999998874
No 379
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.75 E-value=0.014 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+++|.|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4679999999999999999998865
No 380
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.75 E-value=0.07 Score=54.70 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=35.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIA 58 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 58 (607)
..++.|.|.+|+||||||.+++...... . -..++|++.... ..++...+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~-~-g~~Vl~~s~E~s--~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK-T-NENVAIFSLEMS--AQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH-S-SCCEEEEESSSC--HHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh-C-CCcEEEEECCCC--HHHHHHHHH
Confidence 4589999999999999999999887532 1 124888886643 345555443
No 381
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.75 E-value=0.0084 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+|+|.|+.|+||||+|+.++..+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999998875
No 382
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.75 E-value=0.092 Score=54.08 Aligned_cols=41 Identities=27% Similarity=0.310 Sum_probs=30.3
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
...++|+|+|.+|+||||++..++..+..+ .. .+..|+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~--G~-kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRK--GW-KTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHT--TC-CEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CC-eEEEEeccc
Confidence 356799999999999999999999887643 22 266666644
No 383
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.74 E-value=0.017 Score=55.75 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|+|.|+.|+||||||..++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35899999999999999999999864
No 384
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.74 E-value=0.016 Score=53.08 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|++|+||||+|+.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998863
No 385
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.70 E-value=0.025 Score=54.85 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=31.8
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
...++|+|+|++|+||||++..++..+... -..+.+++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 356799999999999999999999887633 12377776654
No 386
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.69 E-value=0.051 Score=44.78 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=37.8
Q ss_pred eEEEccCCCCc--cCCccccCCccCcEeecccccCCCCCC-cccCCCCCCEEeccCCch
Q 007339 358 KVLNLSHTDIE--VLPSSISDLTNLRSLLLRWCGRLKRVP-SLAKLLALQYLDLEGTWI 413 (607)
Q Consensus 358 ~~L~l~~~~~~--~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~l 413 (607)
..++-+++.++ .+|..+. .+|++|+|++|.+....+ .+..+.+|++|+|++|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36677777777 7775433 357788888877666555 677778888888887744
No 387
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.69 E-value=0.014 Score=54.73 Aligned_cols=27 Identities=33% Similarity=0.336 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|.|.|++|+||||+|+.++..+.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999998863
No 388
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.68 E-value=0.038 Score=51.43 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=31.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTE 56 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 56 (607)
.++.|.|.+|+|||++|.+++.....+ .-..++|++.... ..++.+.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~--~~~~v~~~s~E~~--~~~~~~~ 77 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEE--YGEPGVFVTLEER--ARDLRRE 77 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSC--HHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCCceeecccCC--HHHHHHH
Confidence 578999999999999999987653221 1234777776643 3444433
No 389
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.65 E-value=0.054 Score=48.98 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=30.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 49 (607)
.|.+.|.||+||||+|..++.....+ .++ +..+++.....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~--G~~-V~v~d~D~q~~ 47 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ--GVR-VMAGVVETHGR 47 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TCC-EEEEECCCTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC--CCC-EEEEEeCCCCC
Confidence 48899999999999999999887643 333 66666665434
No 390
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.62 E-value=0.035 Score=52.43 Aligned_cols=40 Identities=23% Similarity=0.458 Sum_probs=31.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL 48 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (607)
++|+|.|.||+||||+|..++..+..+ .+ .+.-|++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~--G~-~VlliD~D~q~ 41 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM--GK-TIMVVGCDPKA 41 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT--TC-CEEEEEECTTS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC--CC-cEEEEcCCCCC
Confidence 578889999999999999999998643 22 47888876543
No 391
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.61 E-value=0.02 Score=50.60 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+.|.|.|++|+|||+||.+++.+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 356789999999999999999988753
No 392
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.59 E-value=0.015 Score=53.01 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..|+|.|++|+||||+|+.++..+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999873
No 393
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.59 E-value=0.022 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINN 27 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~ 27 (607)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 394
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.59 E-value=0.02 Score=52.90 Aligned_cols=26 Identities=19% Similarity=0.221 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...|+|.|++|+||||+|+.++..+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999999874
No 395
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.58 E-value=0.018 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999886
No 396
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.57 E-value=0.023 Score=54.90 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=29.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
...+|+|.|+.|+||||+|+.+....... ..-..+..+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~-~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRW-PDHPNVEVITTDG 132 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTS-TTCCCEEEEEGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhccc-CCCCeEEEEeecc
Confidence 44589999999999999999998776421 0112355565543
No 397
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.55 E-value=0.019 Score=51.79 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999998763
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.53 E-value=0.019 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999876
No 399
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.50 E-value=0.077 Score=54.01 Aligned_cols=40 Identities=10% Similarity=0.045 Sum_probs=31.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
..++.|.|.+|+|||++|.+++.....+ -..+.|++....
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms 236 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMG 236 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSC
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCC
Confidence 4589999999999999999999987543 235888877653
No 400
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=94.48 E-value=0.039 Score=52.82 Aligned_cols=41 Identities=27% Similarity=0.430 Sum_probs=32.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL 48 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (607)
-++|+|.|.||+||||+|..++..+..+ .+ .+.-|++....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~-rVlliD~D~q~ 42 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GK-KVMIVGCDPKA 42 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TC-CEEEEEECSSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CC-eEEEEecCCCC
Confidence 3688889999999999999999988643 22 37888876543
No 401
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.44 E-value=0.044 Score=50.32 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|+.|+||||+++.++..+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999999985
No 402
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.41 E-value=0.021 Score=55.90 Aligned_cols=42 Identities=21% Similarity=0.167 Sum_probs=29.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
...++|.|.+|+|||+|+.++++........+. ++++-+.+.
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 356899999999999999999887643212232 345655543
No 403
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.39 E-value=0.028 Score=52.24 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=29.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
.++.|.|++|+||||||.+++...... -..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccC
Confidence 578999999999999999998776422 23488888655
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.36 E-value=0.019 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|+.|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 405
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.36 E-value=0.053 Score=49.85 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=28.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEE
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVT 43 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 43 (607)
..+|+|.|+.|+||||+++.++..+.. .++..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~--~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ--NGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH--TTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCeeeeec
Confidence 358999999999999999999998864 3455344443
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.35 E-value=0.054 Score=48.96 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=28.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEE
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVT 43 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~ 43 (607)
..+|+|.|+.|+||||+++.++..+... ++..+.+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~--~~~~v~~~r 39 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL--GIRDMVFTR 39 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCcceeee
Confidence 4689999999999999999999998643 343344443
No 407
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=94.34 E-value=0.052 Score=52.88 Aligned_cols=44 Identities=27% Similarity=0.370 Sum_probs=34.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCH
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDL 50 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 50 (607)
..+++.+.|.||+||||+|..++..+...+ ..+.-|++....++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g---~~vllid~D~~~~l 58 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVR---RSVLLLSTDPAHNL 58 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSS---SCEEEEECCSSCHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCC---CcEEEEECCCCCCh
Confidence 467889999999999999999999986432 24888888755443
No 408
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.33 E-value=0.024 Score=49.45 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++++|.|+.|+|||||+..++....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 57899999999999999999998764
No 409
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.25 E-value=0.017 Score=53.31 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCChHHHHHHHHH-hhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHIN-NKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~-~~~ 29 (607)
..+++|.|+.|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 410
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.20 E-value=0.066 Score=51.37 Aligned_cols=40 Identities=18% Similarity=0.110 Sum_probs=29.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
..+++|.|++|+|||||++.++...... .. ..+.|++...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G-~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA-MG-KKVGLAMLEE 74 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT-SC-CCEEEEESSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH-cC-CeEEEEeCcC
Confidence 4589999999999999999999887532 11 1477776543
No 411
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.18 E-value=0.068 Score=63.70 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----CcccccchHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVRRPGRLLG 80 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 80 (607)
.+++.|+|++|+||||||.+++...... -..++|++.....+.. .++.++.+... .....+.+....+
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~---G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 4689999999999999999999987633 2358999988776643 25556543221 0111112222222
Q ss_pred H-HhcCCcEEEEEecCCCcc
Q 007339 81 M-LKAKEKFVLILDDMWEAF 99 (607)
Q Consensus 81 ~-~~~~~~~LlVlDdv~~~~ 99 (607)
. ......-++|+|-+....
T Consensus 455 ~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGCC
T ss_pred HHHHhcCCcEEEECCHHHhh
Confidence 2 224567799999987553
No 412
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.17 E-value=0.055 Score=53.01 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=33.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc--cCCCCCCeEEEEEeCCCCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ--EKPNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~--~~~~~f~~~~wv~~~~~~~ 49 (607)
+.+++.+.|.||+||||+|..++..+. ..+ ..+.-|+.....+
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g---~~vllid~D~~~~ 61 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPN---EQFLLISTDPAHN 61 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTT---SCEEEEECCSSCH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC---CeEEEEECCCCCC
Confidence 458899999999999999999998876 331 1377888775443
No 413
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.11 E-value=0.031 Score=54.05 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=29.7
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
....+|+|.|+.|+|||||++.++...... ..-..+.+++...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~-~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRW-PEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTS-TTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhC-CCCCeEEEEecCC
Confidence 345789999999999999999998875310 0112266666543
No 414
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.10 E-value=0.032 Score=51.08 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+.|+|.|.+|+|||||+.+++....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999998853
No 415
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.07 E-value=0.057 Score=50.31 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=32.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHH
Q 007339 8 IGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFK 52 (607)
Q Consensus 8 i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 52 (607)
|+|.|.||+||||+|..++..+...+ ..+.-|++....++..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g---~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY---DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC---SCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCCcChHH
Confidence 66699999999999999999987442 3488888876555443
No 416
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.06 E-value=0.029 Score=53.90 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+++|.|+.|+||||+++.++..++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998875
No 417
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.06 E-value=0.018 Score=50.18 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhccc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
++++|+|+.|+|||||++.++..+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999888753
No 418
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.06 E-value=0.045 Score=52.07 Aligned_cols=43 Identities=19% Similarity=0.368 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCC-------CCCeEEEEEeCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPN-------KFNDVIWVTVSQP 47 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~-------~f~~~~wv~~~~~ 47 (607)
..++.|.|++|+|||||+..++........ .-..++|++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 468999999999999999999876542100 0134777776654
No 419
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.03 E-value=0.091 Score=47.50 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=26.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCe
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFND 38 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~ 38 (607)
..+|+|.|+.|+||||+++.++..+.. ..+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~--~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE--RGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT--TTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH--cCCCc
Confidence 468999999999999999999998863 34544
No 420
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.03 E-value=0.029 Score=52.31 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINN 27 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~ 27 (607)
..+++|.|+.|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 421
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.02 E-value=0.053 Score=54.01 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=33.9
Q ss_pred CCceEEEEEc-CCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC
Q 007339 3 DKVSKIGVWG-MGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD 49 (607)
Q Consensus 3 ~~~~~i~I~G-~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~ 49 (607)
...++|+|+| .||+||||+|..++..+..++ ..+..+++....+
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g---~rVlliD~D~~~~ 185 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMG---KKVFYLNIEQCGT 185 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHT---CCEEEEECCTTCC
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCC---CCEEEEECCCCCC
Confidence 4578899986 999999999999998886431 2388899884444
No 422
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.92 E-value=0.027 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+++|.|+.|+|||||++.++...+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999998775
No 423
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.88 E-value=0.041 Score=51.68 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...++++.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999998775
No 424
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.87 E-value=0.031 Score=55.31 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|+|.|+.|+||||||..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 36899999999999999999998863
No 425
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.85 E-value=0.032 Score=51.48 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+++|.|+.|+|||||.+.++--.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 426
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.83 E-value=0.037 Score=51.33 Aligned_cols=26 Identities=15% Similarity=0.320 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...|+|.|+.|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999874
No 427
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.82 E-value=0.058 Score=48.43 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=32.3
Q ss_pred eEEEEE-cCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHH
Q 007339 6 SKIGVW-GMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLF 51 (607)
Q Consensus 6 ~~i~I~-G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 51 (607)
++|+|+ +.||+||||+|..++..+..++ ..+.-+++....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g---~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSG---YNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCC---CeEEEEECCCCCCHH
Confidence 578787 6899999999999999987432 238888887554433
No 428
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.81 E-value=0.037 Score=50.41 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..++|+|.|.+|+|||||+..++....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999999998863
No 429
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.79 E-value=0.035 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.+|.|.|++|+||||+|+.++...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999999853
No 430
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.78 E-value=0.036 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.+++|.|+.|+|||||.+.++--.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998765
No 431
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.65 E-value=0.045 Score=53.26 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+.|+|+|++|+||||+++.++....
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 455699999999999999999988764
No 432
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.63 E-value=0.092 Score=51.07 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKL 53 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 53 (607)
.+++...|.||+||||+|..++......+ ..+.-|+.....++...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G---~rVLlvD~D~~~~l~~~ 59 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSG---KKTLVISTDPAHSLSDS 59 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEECCSSCCHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCC---CcEEEEeCCCCcCHHHH
Confidence 46778889999999999999999886431 23778887765555433
No 433
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.62 E-value=0.073 Score=52.00 Aligned_cols=130 Identities=10% Similarity=0.050 Sum_probs=66.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhcC
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKAK 85 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 85 (607)
+-+.++|++|+|||++|+.++.... .. ...+.+.......++... ........... +..+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~---~~---~~~i~~~~~~~~~~l~g~----~~~~~~~~~~~----------~~~g 106 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMD---LD---FHRIQFTPDLLPSDLIGT----MIYNQHKGNFE----------VKKG 106 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTT---CC---EEEEECCTTCCHHHHHEE----EEEETTTTEEE----------EEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC---CC---eEEEecCCCCChhhcCCc----eeecCCCCceE----------eccC
Confidence 3578999999999999999998864 11 344454433333322111 00000000000 0011
Q ss_pred --CcEEEEEecCCCccc--ccccccCC-----------CCCCCCcEEEEEeCchh------hhh--hcccc-eeecccCC
Q 007339 86 --EKFVLILDDMWEAFP--LQEIGIPE-----------PSEENGCKLVITTRLYR------VCR--SMKCK-QVAVELLS 141 (607)
Q Consensus 86 --~~~LlVlDdv~~~~~--~~~l~~~~-----------~~~~~~~~IliTtR~~~------~~~--~~~~~-~~~l~~L~ 141 (607)
...++++|+++.... ...+...+ ........|+.|+.... +.. .-+.. .+.++..+
T Consensus 107 ~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~ 186 (331)
T 2r44_A 107 PVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLD 186 (331)
T ss_dssp TTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCC
T ss_pred cccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCC
Confidence 135899999986632 11111000 01123455666665322 111 11222 27888889
Q ss_pred HHHHHHHhHhhhCC
Q 007339 142 KQEAFNLFIDGVGS 155 (607)
Q Consensus 142 ~~ea~~L~~~~~~~ 155 (607)
.++-.+++.+.+..
T Consensus 187 ~~~~~~il~~~~~~ 200 (331)
T 2r44_A 187 KESELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccc
Confidence 99988888887754
No 434
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.62 E-value=0.056 Score=63.55 Aligned_cols=86 Identities=13% Similarity=0.124 Sum_probs=54.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCccc----c-cchHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDK----V-RRPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~----~-~~~~~l~ 79 (607)
.+++.|+|++|+|||+||.+++.+-.. +=...+||++.+..+ +++. +.++-+....... . ..+..+.
T Consensus 1082 g~~~l~~G~~g~GKT~la~~~~~~~~~---~g~~~~fi~~~~~~~--~~~~---~~~G~d~~~~~~~~~~~~e~~l~~~~ 1153 (1706)
T 3cmw_A 1082 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALD--PIYA---RKLGVDIDNLLCSQPDTGEQALEICD 1153 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCC--HHHH---HHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhh---cCCceeEEEcccchH--HHHH---HHhCCCHHHHhhccccchHHHHHHHH
Confidence 467999999999999999999988642 233488898876542 3332 4555433222111 2 2233333
Q ss_pred HHHhcCCcEEEEEecCCCc
Q 007339 80 GMLKAKEKFVLILDDMWEA 98 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~ 98 (607)
...++....++++|.++..
T Consensus 1154 ~~ar~~~~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1154 ALARSGAVDVIVVDSVAAL 1172 (1706)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCeEEEeCchHhc
Confidence 3334677899999998633
No 435
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.59 E-value=0.067 Score=48.65 Aligned_cols=28 Identities=32% Similarity=0.292 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhccc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQE 31 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~ 31 (607)
...+|+|.|+.|+||||+++.++..+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999998864
No 436
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.55 E-value=0.027 Score=53.07 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
....+|+|.|+.|+||||+|+.++..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999998863
No 437
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.53 E-value=0.039 Score=50.96 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||++.++--.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999987653
No 438
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.53 E-value=0.032 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+++|.|+.|+|||||.+.++--.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998665
No 439
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.52 E-value=0.052 Score=47.27 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.0
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
......|+|.|.+|+|||||...+....
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4567789999999999999999998653
No 440
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.50 E-value=0.074 Score=47.80 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=23.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..|+|-|+.|+||||+++.++..+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 5899999999999999999999985
No 441
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.49 E-value=0.041 Score=54.02 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=24.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+++|.|+.|+||||+++.++..++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 457999999999999999999998875
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.49 E-value=0.044 Score=50.66 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999875
No 443
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.48 E-value=0.077 Score=53.23 Aligned_cols=91 Identities=13% Similarity=0.207 Sum_probs=52.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCC-eEEEEEeCCC-CCHHHHHHHHHHH--HccCC----CCCcccc------
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFN-DVIWVTVSQP-LDLFKLQTEIATA--LKQSL----PENEDKV------ 72 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~----~~~~~~~------ 72 (607)
.++|.|.+|+|||+|+.++++.....+.+-+ .++++-+.+. ....++.+.+... +.... ....+..
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999988652111112 4666666654 3455555554432 11100 0111111
Q ss_pred cchHHHHHHHh--cCCcEEEEEecCCC
Q 007339 73 RRPGRLLGMLK--AKEKFVLILDDMWE 97 (607)
Q Consensus 73 ~~~~~l~~~~~--~~~~~LlVlDdv~~ 97 (607)
-....+.+.+. .++++|+++||+-.
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11223445555 38999999999854
No 444
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.45 E-value=0.049 Score=48.68 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
+..-.|+|.|..|+|||||.+.++...
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998763
No 445
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.44 E-value=0.04 Score=54.70 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.+.|.++|++|+|||++|+.++....
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999999873
No 446
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.43 E-value=0.041 Score=51.72 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+++|.|+.|+|||||.+.++--.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 447
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.35 E-value=0.1 Score=51.37 Aligned_cols=42 Identities=31% Similarity=0.331 Sum_probs=31.6
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL 48 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (607)
..+++.+.|.||+||||+|..++......+. .+.-|+.....
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~---rVLlvD~D~~~ 66 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGL---KVVIVSTDPAH 66 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSC---CEEEEECCTTC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCC---eEEEEeCCCCC
Confidence 3456777899999999999999998864421 37788766543
No 448
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.35 E-value=0.16 Score=62.74 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=50.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCc---ccccchHHHHHHH
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENE---DKVRRPGRLLGML 82 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~~ 82 (607)
+-|.++|++|+|||++|+.+..... .+ ..+.++++...+...+...+...+........ ...
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~----~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~---------- 1332 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS----LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK---------- 1332 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS----SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB----------
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC----CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC----------
Confidence 5688999999999999988776542 22 36678888877777776666655432211110 000
Q ss_pred hcCCcEEEEEecCC
Q 007339 83 KAKEKFVLILDDMW 96 (607)
Q Consensus 83 ~~~~~~LlVlDdv~ 96 (607)
..+++.++++||++
T Consensus 1333 ~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1333 SDIKNLVLFCDEIN 1346 (2695)
T ss_dssp SSSSCEEEEEETTT
T ss_pred CCCceEEEEecccc
Confidence 04678999999965
No 449
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.29 E-value=0.09 Score=51.90 Aligned_cols=28 Identities=25% Similarity=0.569 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+...+|+|.|.+|+||||++..++..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999988764
No 450
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.28 E-value=0.079 Score=56.38 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=35.1
Q ss_pred CCCceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCH
Q 007339 2 DDKVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDL 50 (607)
Q Consensus 2 ~~~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 50 (607)
++..+++.+.|.||+||||+|..++......+ ..+..|+.....++
T Consensus 5 ~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G---~rVLlvd~D~~~~l 50 (589)
T 1ihu_A 5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQG---KRVLLVSTDPASNV 50 (589)
T ss_dssp SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCTTCCH
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCC---CcEEEEECCCCcCH
Confidence 45678899999999999999999999886442 13778877644443
No 451
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.26 E-value=0.045 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+++|.|+.|+|||||++.++--.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34689999999999999999998765
No 452
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.23 E-value=0.041 Score=55.19 Aligned_cols=92 Identities=17% Similarity=0.296 Sum_probs=51.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCC-------CCCC-eEEEEEeCCC-CCHHHHHHHHHHH--HccCC----CCCcc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKP-------NKFN-DVIWVTVSQP-LDLFKLQTEIATA--LKQSL----PENED 70 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~-------~~f~-~~~wv~~~~~-~~~~~~~~~i~~~--l~~~~----~~~~~ 70 (607)
..++|.|.+|+|||+|+.++++...... .+-+ .++++-+.+. ....++.+.+... +.... ....+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 3468999999999999999988864210 1122 4666666654 2345555544331 11000 00111
Q ss_pred cc------cchHHHHHHHh--cCCcEEEEEecCCC
Q 007339 71 KV------RRPGRLLGMLK--AKEKFVLILDDMWE 97 (607)
Q Consensus 71 ~~------~~~~~l~~~~~--~~~~~LlVlDdv~~ 97 (607)
.. .....+.+.+. .++++|+++||+..
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11 11223444554 38999999999854
No 453
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.23 E-value=0.06 Score=54.86 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|+.|+||||+++.++..++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 457999999999999999999998875
No 454
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.23 E-value=0.05 Score=47.99 Aligned_cols=110 Identities=14% Similarity=0.007 Sum_probs=53.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCCCcccccchHHHHHHHhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPENEDKVRRPGRLLGMLKA 84 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~~~~ 84 (607)
..++.|+|+.|+||||++.+++.++... .. .+.++....... .....+...++..... ........+.+.+ .
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~-~v~~~~~~~d~r--~~~~~i~s~~g~~~~~--~~~~~~~~~~~~~-~ 74 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG--KK-KVAVFKPKIDSR--YHSTMIVSHSGNGVEA--HVIERPEEMRKYI-E 74 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT--TC-EEEEEEEC-------CCCEECC----CEEC--EEESSGGGGGGGC-C
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC--CC-eEEEEeeccccc--cCcccEEecCCCceee--EEECCHHHHHHHh-c
Confidence 3578999999999999998888877532 22 244443221100 0000011111111000 0001112222222 2
Q ss_pred CCcEEEEEecCCCc-ccccccccCCCCCCCCcEEEEEeCch
Q 007339 85 KEKFVLILDDMWEA-FPLQEIGIPEPSEENGCKLVITTRLY 124 (607)
Q Consensus 85 ~~~~LlVlDdv~~~-~~~~~l~~~~~~~~~~~~IliTtR~~ 124 (607)
++.-++++|.++.. ..+.+....+.. .+..|++|.+..
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLDL 113 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEESB
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeecc
Confidence 34669999999876 233333222221 267789888843
No 455
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.23 E-value=0.05 Score=50.47 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+++|.|+.|+|||||.+.++--.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 456
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.22 E-value=0.11 Score=46.24 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEK 32 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~ 32 (607)
.|+|-|+-|+||||.++.+++.++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 58899999999999999999998743
No 457
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.21 E-value=0.049 Score=53.94 Aligned_cols=26 Identities=23% Similarity=0.027 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..++++|+|++|+|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34689999999999999999999764
No 458
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.20 E-value=0.034 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
.+++|.|+.|+|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999865
No 459
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.20 E-value=0.051 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
..+++|.|+.|+|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999875
No 460
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.18 E-value=0.14 Score=52.51 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=35.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCC-HHHHHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLD-LFKLQTEI 57 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 57 (607)
...++|.|..|+|||+|+.++++... -+.++++-+.+... ..++.+.+
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~~~-----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKWSD-----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHHSS-----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCeEEeecCCCCCHHHHHHHHHhccC-----CCEEEEEEecccHHHHHHHHHHH
Confidence 34679999999999999999987632 34688888877554 45555554
No 461
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=93.17 E-value=0.11 Score=50.62 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=31.9
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL 48 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (607)
..+++.+.|.||+||||+|..++...... .+ .+.-++.....
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~--G~-rVllvD~D~~~ 59 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKV--RS-SVLLISTDPAH 59 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTS--SS-CEEEEECCTTC
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHC--CC-eEEEEECCCCc
Confidence 34677789999999999999999988643 22 37778876543
No 462
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.17 E-value=0.058 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
+-|+|.|.+|+|||||+..+....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568999999999999999998764
No 463
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.16 E-value=0.049 Score=58.06 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=28.4
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCC
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQP 47 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~ 47 (607)
.+++.|+|++|.||||++..+...+......-...+.+.+.+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg 206 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTG 206 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCCh
Confidence 4689999999999999998887665421111122455555443
No 464
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.14 E-value=0.052 Score=51.97 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+++|+|+.|+|||||++.++.-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999998765
No 465
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.12 E-value=0.044 Score=51.74 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+++|.|+.|+|||||++.++--.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4589999999999999999998765
No 466
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.12 E-value=0.059 Score=50.51 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+++|.|+.|+||||+++.++..+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 346899999999999999999987764
No 467
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.10 E-value=0.049 Score=50.86 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
...+++|.|+.|+|||||.+.++--.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 468
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.04 E-value=0.054 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.472 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
-.|+|.|..|+|||||.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 469
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.03 E-value=0.046 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
...+|+|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998776
No 470
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.03 E-value=0.12 Score=46.64 Aligned_cols=42 Identities=24% Similarity=0.237 Sum_probs=32.0
Q ss_pred EEEE-EcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHH
Q 007339 7 KIGV-WGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFK 52 (607)
Q Consensus 7 ~i~I-~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 52 (607)
+|+| .+.||+||||+|..++..+..+ . .+.-+++....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~--g--~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ--G--ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT--S--CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc--C--CEEEEECCCCCCHHH
Confidence 4555 5789999999999999998743 2 588888877654443
No 471
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.02 E-value=0.044 Score=50.74 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+++|.|+.|+|||||.+.++--.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998765
No 472
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.02 E-value=0.049 Score=50.79 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhh
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
..+++|.|+.|+|||||++.++--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999875
No 473
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.01 E-value=0.037 Score=50.14 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+++|.|+.|+|||||.+.++--.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998765
No 474
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.01 E-value=0.052 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+++|.|+.|+|||||++.++--.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4589999999999999999998765
No 475
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.96 E-value=0.044 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||++.++--.+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46899999999999999999987753
No 476
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.95 E-value=0.046 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||.+.++--.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45899999999999999999987754
No 477
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.92 E-value=0.054 Score=51.12 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||++.++--.+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45899999999999999999987653
No 478
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.92 E-value=0.057 Score=48.39 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999974
No 479
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.92 E-value=0.046 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||.+.++--.+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999999999999999987653
No 480
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.89 E-value=0.067 Score=48.75 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+|+|.|+.|+||||+|+.++..+.
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999999874
No 481
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.88 E-value=0.047 Score=50.75 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||++.++--.+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987753
No 482
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.86 E-value=0.15 Score=59.96 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHccCCCC----Cccccc-chHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPLDLFKLQTEIATALKQSLPE----NEDKVR-RPGRLL 79 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~----~~~~~~-~~~~l~ 79 (607)
.++|-|+|+.|+||||||.+++...++. =...+|+++.+..+..- ++.++.+... .++..+ ....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~---g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 4789999999999999999999876543 23489999988776542 7777765432 222222 333344
Q ss_pred HHHhcCCcEEEEEecCCCccc
Q 007339 80 GMLKAKEKFVLILDDMWEAFP 100 (607)
Q Consensus 80 ~~~~~~~~~LlVlDdv~~~~~ 100 (607)
+...++..-++|+|-|.-...
T Consensus 1503 ~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCC
T ss_pred HHHHcCCCCEEEEccHHhCCc
Confidence 444567888999999865533
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.85 E-value=0.077 Score=45.53 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.0
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhh
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
+.+-|.|.|.+|+||||+|.++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3467899999999999999999875
No 484
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.84 E-value=0.094 Score=45.70 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=25.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCCCC
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQPL 48 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~~~ 48 (607)
++.|+|.+|+|||++|.+++.. . ..++++.-...+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~------~~~~yiaT~~~~ 35 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A------PQVLYIATSQIL 35 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C------SSEEEEECCCC-
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C------CCeEEEecCCCC
Confidence 3789999999999999999865 2 126666655543
No 485
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.83 E-value=0.057 Score=50.85 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
..+++|.|+.|+|||||.+.++--.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4589999999999999999998765
No 486
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.82 E-value=0.067 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 487
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=92.81 E-value=0.37 Score=48.85 Aligned_cols=89 Identities=16% Similarity=0.167 Sum_probs=48.1
Q ss_pred eEEEEEcCCCChHHHHHH-HHHhhcccCCCCCCeEEEEEeCCCC-CHHHHHHHHHHHHccCC------CCCccccc----
Q 007339 6 SKIGVWGMGGIGKTTIMS-HINNKLQEKPNKFNDVIWVTVSQPL-DLFKLQTEIATALKQSL------PENEDKVR---- 73 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~-~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 73 (607)
..++|.|..|+|||+||. .+++. + ..-..++++-+.+.. +..++.+.+...=.... ....+...
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~-~---~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ-R---DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT-S---SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh-c---cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 356899999999999975 55553 2 212235777777653 34555555433211100 01111110
Q ss_pred --chHHHHHHHh-cCCcEEEEEecCCCc
Q 007339 74 --RPGRLLGMLK-AKEKFVLILDDMWEA 98 (607)
Q Consensus 74 --~~~~l~~~~~-~~~~~LlVlDdv~~~ 98 (607)
....+.+.+. +++++|+++||+...
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dsltr~ 266 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLSKQ 266 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChHHH
Confidence 1111222232 689999999998544
No 488
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.80 E-value=0.056 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.439 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcc
Q 007339 7 KIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
.++|.|++|+||||+|+.++..+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 479999999999999999999874
No 489
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=92.79 E-value=0.16 Score=50.01 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=33.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc--cCCCCCCeEEEEEeCCCCCHHHH
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ--EKPNKFNDVIWVTVSQPLDLFKL 53 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~--~~~~~f~~~~wv~~~~~~~~~~~ 53 (607)
..++...|.||+||||+|..++..+. ..+. .+.-|+.....++...
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~---rVLLvD~D~~~~l~~~ 65 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNK---QFLLISTDPAHNLSDA 65 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTS---CEEEEECCSSCCHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCC---eEEEEECCCCCCHHHH
Confidence 45667789999999999999998886 4322 3788887765555443
No 490
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.76 E-value=0.049 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 007339 7 KIGVWGMGGIGKTTIMSHINNK 28 (607)
Q Consensus 7 ~i~I~G~~G~GKTtLa~~~~~~ 28 (607)
-|+|.|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 491
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=92.64 E-value=0.3 Score=49.68 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=46.3
Q ss_pred eEEEEEcCCCChHHHHHH-HHHhhcccCCCCCC-eEEEEEeCCCC-CHHHHHHHHHHHHccC------CCCCccccc---
Q 007339 6 SKIGVWGMGGIGKTTIMS-HINNKLQEKPNKFN-DVIWVTVSQPL-DLFKLQTEIATALKQS------LPENEDKVR--- 73 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~--- 73 (607)
..++|.|.+|+|||+||. .+++.. ..+ .++++-+.+.. +..++.+.+...=... .....+...
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 346899999999999965 555543 134 35777777653 2334444333210000 001111111
Q ss_pred ---chHHHHHHHh-cCCcEEEEEecCCC
Q 007339 74 ---RPGRLLGMLK-AKEKFVLILDDMWE 97 (607)
Q Consensus 74 ---~~~~l~~~~~-~~~~~LlVlDdv~~ 97 (607)
....+.+++. .++++|+++||+..
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHHH
Confidence 1112223332 68999999999753
No 492
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.63 E-value=0.053 Score=50.39 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||.+.++--.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45799999999999999999987753
No 493
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=92.62 E-value=0.068 Score=55.61 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=24.4
Q ss_pred CCceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 3 DKVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 3 ~~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
+...+|.++|++|.||||+|+.++..+.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999998864
No 494
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.61 E-value=0.04 Score=55.76 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=30.5
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcccCCCCCCeEEEEEeCC
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQEKPNKFNDVIWVTVSQ 46 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f~~~~wv~~~~ 46 (607)
..++|+|+|++|+||||+|..++.....+ .+ .+..+++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~--G~-kVllv~~D~ 137 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR--GL-KPALIAADT 137 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH--HC-CEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CC-eEEEEeccc
Confidence 35689999999999999999999887533 11 266776553
No 495
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.57 E-value=0.054 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||.+.++--.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45799999999999999999987653
No 496
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.56 E-value=0.094 Score=47.86 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+|+|.|+.|+||||+++.++..+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999885
No 497
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.54 E-value=0.12 Score=52.06 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=52.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcccCCCCC-CeEEEEEeCCCC-CHHHHHHHHHHHHccCC------CCCcccc-----
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKLQEKPNKF-NDVIWVTVSQPL-DLFKLQTEIATALKQSL------PENEDKV----- 72 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 72 (607)
..++|.|.+|+|||+|+.+++.........- +.++++-+.+.. ...++.+.+...=.... ..+.+..
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 3467899999999999999999875211111 346666666543 35555555543311100 0011111
Q ss_pred -cchHHHHHHHh--cCCcEEEEEecCCC
Q 007339 73 -RRPGRLLGMLK--AKEKFVLILDDMWE 97 (607)
Q Consensus 73 -~~~~~l~~~~~--~~~~~LlVlDdv~~ 97 (607)
.....+.+.+. +++++|+++||+..
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 11222344444 58999999999743
No 498
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.48 E-value=0.061 Score=50.95 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 5 VSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 5 ~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
..+++|.|+.|+|||||.+.++--.+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45789999999999999999987753
No 499
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.39 E-value=0.087 Score=50.53 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCChHHHHHHHHHhhcc
Q 007339 4 KVSKIGVWGMGGIGKTTIMSHINNKLQ 30 (607)
Q Consensus 4 ~~~~i~I~G~~G~GKTtLa~~~~~~~~ 30 (607)
...+++|+|+.|+|||||++.++.-+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 346899999999999999999987653
No 500
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.36 E-value=0.063 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 007339 6 SKIGVWGMGGIGKTTIMSHINNKL 29 (607)
Q Consensus 6 ~~i~I~G~~G~GKTtLa~~~~~~~ 29 (607)
.+|+|.|+.|+||||+|+.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998875
Done!