Query 007341
Match_columns 607
No_of_seqs 295 out of 2012
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 22:16:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007341.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007341hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 99.9 5.5E-22 1.2E-26 206.8 9.7 66 106-171 230-295 (526)
2 TIGR01557 myb_SHAQKYF myb-like 99.7 3.6E-18 7.8E-23 137.8 6.1 55 111-165 1-56 (57)
3 COG0745 OmpR Response regulato 98.3 1.1E-06 2.3E-11 88.2 6.0 48 1-48 74-121 (229)
4 COG4565 CitB Response regulato 97.7 8.3E-05 1.8E-09 75.0 6.8 49 2-50 77-125 (224)
5 COG4566 TtrR Response regulato 97.7 5.1E-05 1.1E-09 75.4 5.0 48 1-48 78-125 (202)
6 COG2204 AtoC Response regulato 97.6 9.9E-05 2.2E-09 81.5 6.9 49 1-49 78-126 (464)
7 PRK10046 dpiA two-component re 97.5 0.0007 1.5E-08 65.9 10.3 48 1-48 80-127 (225)
8 PF00072 Response_reg: Respons 97.4 0.00026 5.7E-09 59.8 5.6 40 1-40 73-112 (112)
9 PRK10529 DNA-binding transcrip 97.0 0.0014 3.1E-08 61.6 6.7 46 1-46 74-119 (225)
10 PRK11173 two-component respons 97.0 0.0017 3.6E-08 62.4 6.6 46 1-46 76-121 (237)
11 PRK10766 DNA-binding transcrip 97.0 0.0017 3.6E-08 61.0 6.4 46 1-46 75-120 (221)
12 TIGR03787 marine_sort_RR prote 97.0 0.002 4.4E-08 60.8 6.9 46 1-46 76-121 (227)
13 PRK10816 DNA-binding transcrip 96.9 0.0018 3.9E-08 61.1 6.4 45 1-45 74-118 (223)
14 PRK09836 DNA-binding transcrip 96.9 0.0019 4.2E-08 61.0 6.5 45 1-45 74-118 (227)
15 PF00249 Myb_DNA-binding: Myb- 96.8 0.0022 4.8E-08 49.4 5.1 48 113-163 1-48 (48)
16 PRK10643 DNA-binding transcrip 96.8 0.0027 5.9E-08 59.0 6.6 46 1-46 74-119 (222)
17 PRK10161 transcriptional regul 96.8 0.0029 6.3E-08 59.9 6.7 45 1-45 78-122 (229)
18 PRK09468 ompR osmolarity respo 96.8 0.0027 5.9E-08 60.7 6.2 46 1-46 79-124 (239)
19 PRK10336 DNA-binding transcrip 96.8 0.0032 6.9E-08 58.6 6.5 45 1-45 74-118 (219)
20 PLN03029 type-a response regul 96.7 0.0041 8.8E-08 61.6 7.0 46 1-46 104-149 (222)
21 TIGR01387 cztR_silR_copR heavy 96.7 0.0037 8.1E-08 57.9 6.1 46 1-46 72-117 (218)
22 PRK10955 DNA-binding transcrip 96.7 0.0039 8.4E-08 58.7 6.2 46 1-46 73-118 (232)
23 CHL00148 orf27 Ycf27; Reviewed 96.6 0.0044 9.6E-08 58.6 6.6 46 1-46 79-124 (240)
24 PRK11517 transcriptional regul 96.6 0.0044 9.5E-08 58.0 6.4 45 1-45 73-117 (223)
25 PRK10701 DNA-binding transcrip 96.6 0.0047 1E-07 59.2 6.6 46 1-46 74-119 (240)
26 TIGR02154 PhoB phosphate regul 96.6 0.0043 9.4E-08 57.7 6.1 45 1-45 78-122 (226)
27 PRK11083 DNA-binding response 96.6 0.0041 8.8E-08 58.1 5.7 46 1-46 77-122 (228)
28 PRK13856 two-component respons 96.6 0.0051 1.1E-07 59.5 6.5 46 1-46 74-120 (241)
29 PRK10360 DNA-binding transcrip 96.5 0.0054 1.2E-07 56.4 6.2 45 1-45 74-118 (196)
30 COG4753 Response regulator con 96.5 0.0045 9.7E-08 68.9 6.1 48 2-49 79-126 (475)
31 PRK09581 pleD response regulat 96.4 0.0043 9.4E-08 64.4 5.5 46 1-46 230-275 (457)
32 PRK10430 DNA-binding transcrip 96.4 0.0087 1.9E-07 58.7 7.2 47 1-47 79-125 (239)
33 TIGR02915 PEP_resp_reg putativ 96.4 0.0063 1.4E-07 65.1 6.7 46 1-46 75-120 (445)
34 PRK10693 response regulator of 96.4 0.0067 1.5E-07 62.7 6.7 46 1-46 47-93 (303)
35 COG4567 Response regulator con 96.4 0.0028 6.1E-08 61.7 3.5 40 1-40 83-122 (182)
36 PRK10840 transcriptional regul 96.3 0.0081 1.7E-07 57.7 6.4 45 1-45 82-126 (216)
37 PRK09958 DNA-binding transcrip 96.3 0.0078 1.7E-07 55.7 6.0 45 1-45 75-119 (204)
38 PRK10610 chemotaxis regulatory 96.3 0.016 3.4E-07 47.4 6.8 45 1-45 82-126 (129)
39 PRK09935 transcriptional regul 96.2 0.0098 2.1E-07 54.8 6.1 45 1-45 79-123 (210)
40 PRK15479 transcriptional regul 96.2 0.013 2.9E-07 54.4 6.6 46 1-46 74-119 (221)
41 COG3437 Response regulator con 96.2 0.0055 1.2E-07 66.0 4.5 46 1-46 91-136 (360)
42 PRK11475 DNA-binding transcrip 96.0 0.012 2.7E-07 58.2 6.2 46 1-46 70-116 (207)
43 TIGR02875 spore_0_A sporulatio 96.0 0.013 2.9E-07 57.8 6.2 45 1-45 80-124 (262)
44 COG3706 PleD Response regulato 95.9 0.015 3.3E-07 64.3 6.4 48 1-48 208-255 (435)
45 COG3707 AmiR Response regulato 95.9 0.019 4.2E-07 57.4 6.5 49 1-49 79-127 (194)
46 PRK10710 DNA-binding transcrip 95.8 0.023 4.9E-07 53.8 6.5 45 1-45 83-127 (240)
47 PRK09483 response regulator; P 95.7 0.022 4.8E-07 53.2 6.1 46 1-46 77-122 (217)
48 PRK09581 pleD response regulat 95.7 0.027 5.9E-07 58.5 7.2 47 1-47 78-124 (457)
49 COG2197 CitB Response regulato 95.5 0.031 6.7E-07 55.4 6.5 48 1-48 76-123 (211)
50 PRK15369 two component system 95.3 0.04 8.8E-07 49.9 6.0 45 1-45 79-123 (211)
51 PRK10403 transcriptional regul 95.1 0.041 9E-07 50.4 5.7 45 1-45 82-126 (215)
52 COG0784 CheY FOG: CheY-like re 95.1 0.062 1.3E-06 46.4 6.3 45 1-45 81-126 (130)
53 PRK11361 acetoacetate metaboli 95.0 0.033 7.1E-07 59.7 5.5 46 1-46 78-123 (457)
54 PRK13435 response regulator; P 95.0 0.037 8.1E-07 49.3 4.9 44 1-47 80-123 (145)
55 PRK10923 glnG nitrogen regulat 94.9 0.059 1.3E-06 58.3 6.8 46 1-46 77-122 (469)
56 PRK10651 transcriptional regul 94.8 0.067 1.5E-06 49.2 6.2 45 1-45 82-126 (216)
57 PRK15115 response regulator Gl 94.8 0.041 8.8E-07 59.0 5.4 45 1-45 79-123 (444)
58 PRK11107 hybrid sensory histid 94.7 0.044 9.5E-07 63.1 5.8 45 1-45 743-787 (919)
59 TIGR01818 ntrC nitrogen regula 94.7 0.065 1.4E-06 57.7 6.5 46 1-46 72-117 (463)
60 PRK15347 two component system 94.5 0.072 1.6E-06 61.5 6.7 45 1-45 768-812 (921)
61 PRK11697 putative two-componen 94.4 0.079 1.7E-06 51.0 5.9 42 2-45 77-118 (238)
62 PRK10365 transcriptional regul 94.4 0.048 1E-06 58.1 4.7 46 1-46 79-124 (441)
63 PRK14084 two-component respons 94.4 0.081 1.8E-06 51.5 5.8 43 1-45 76-118 (246)
64 PRK09390 fixJ response regulat 94.1 0.064 1.4E-06 48.4 4.3 45 1-45 77-121 (202)
65 cd00156 REC Signal receiver do 94.1 0.066 1.4E-06 41.1 3.8 42 1-42 71-112 (113)
66 PRK11466 hybrid sensory histid 93.8 0.095 2.1E-06 60.8 6.0 45 1-45 756-800 (914)
67 TIGR02956 TMAO_torS TMAO reduc 93.7 0.12 2.5E-06 60.3 6.4 45 1-45 779-823 (968)
68 PRK09959 hybrid sensory histid 92.9 0.18 3.8E-06 60.7 6.5 44 1-44 1032-1075(1197)
69 PRK12555 chemotaxis-specific m 90.5 0.45 9.9E-06 49.7 5.7 30 1-30 75-106 (337)
70 PRK10100 DNA-binding transcrip 90.1 0.58 1.3E-05 46.8 5.8 45 1-47 83-129 (216)
71 PRK11091 aerobic respiration c 89.8 0.56 1.2E-05 53.9 6.2 44 1-45 602-645 (779)
72 smart00426 TEA TEA domain. 89.8 0.27 5.8E-06 42.0 2.6 47 115-161 5-67 (68)
73 PRK13558 bacterio-opsin activa 88.5 0.72 1.6E-05 52.0 5.7 45 1-45 81-127 (665)
74 PRK00742 chemotaxis-specific m 87.6 1.1 2.3E-05 47.2 6.0 31 1-31 78-110 (354)
75 COG3947 Response regulator con 86.1 0.4 8.6E-06 51.4 1.8 43 1-45 74-116 (361)
76 TIGR03815 CpaE_hom_Actino heli 85.1 1.4 3E-05 46.0 5.2 40 3-42 46-85 (322)
77 PF01285 TEA: TEA/ATTS domain 83.1 0.61 1.3E-05 51.9 1.6 53 110-162 46-112 (431)
78 cd00167 SANT 'SWI3, ADA2, N-Co 79.5 6.2 0.00013 28.2 5.4 43 115-161 1-43 (45)
79 smart00717 SANT SANT SWI3, AD 76.9 8.3 0.00018 27.9 5.5 41 114-158 2-42 (49)
80 PRK15411 rcsA colanic acid cap 70.4 5.3 0.00012 39.4 4.0 44 1-45 79-123 (207)
81 KOG0850 Transcription factor D 68.9 16 0.00034 38.2 7.1 65 101-171 114-182 (245)
82 PRK12704 phosphodiesterase; Pr 63.9 7.3 0.00016 44.4 4.0 45 2-46 252-298 (520)
83 KOG3841 TEF-1 and related tran 57.5 47 0.001 37.1 8.4 57 113-170 76-150 (455)
84 COG3279 LytT Response regulato 56.2 8.3 0.00018 39.4 2.5 43 1-45 77-119 (244)
85 PRK11107 hybrid sensory histid 52.5 24 0.00051 41.2 5.7 43 1-43 608-650 (919)
86 PF12776 Myb_DNA-bind_3: Myb/S 44.9 29 0.00062 29.6 3.7 55 115-169 1-68 (96)
87 COG2201 CheB Chemotaxis respon 44.4 38 0.00081 37.2 5.3 31 1-31 76-108 (350)
88 PF01408 GFO_IDH_MocA: Oxidore 42.0 46 0.00099 29.0 4.6 39 8-46 73-113 (120)
89 PF13921 Myb_DNA-bind_6: Myb-l 33.6 1.1E+02 0.0023 24.1 5.1 41 116-161 1-41 (60)
90 PF11888 DUF3408: Protein of u 32.6 1.5E+02 0.0033 27.9 6.8 47 114-169 83-129 (136)
91 COG3706 PleD Response regulato 31.2 26 0.00057 39.4 1.7 47 2-48 61-107 (435)
92 KOG0457 Histone acetyltransfer 23.2 1.2E+02 0.0026 34.4 4.8 47 113-163 72-118 (438)
93 PLN03212 Transcription repress 22.1 1.5E+02 0.0032 31.5 5.0 34 111-146 23-56 (249)
94 COG1460 Uncharacterized protei 21.0 1.3E+02 0.0028 28.4 3.9 49 115-166 47-96 (114)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.86 E-value=5.5e-22 Score=206.75 Aligned_cols=66 Identities=53% Similarity=0.866 Sum_probs=62.4
Q ss_pred CCCCCCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhchhh
Q 007341 106 PTTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISC 171 (607)
Q Consensus 106 ~s~~kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr~s~ 171 (607)
....||+|++||+|||++||+||++||++||+||+||++|+|+|||++||||||||||+++|++..
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~ 295 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA 295 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence 345789999999999999999999999999999999999999999999999999999999998754
No 2
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.73 E-value=3.6e-18 Score=137.81 Aligned_cols=55 Identities=64% Similarity=1.003 Sum_probs=53.1
Q ss_pred CCceeccHHHHHHHHHHHHHhCC-CCCchHHHHhhcCCCCCCHHHHHHhhhhhhhh
Q 007341 111 KPRVVWSVELHRKFVAAVNQLGI-DKAVPKKILDLMNVEKLTRENVASHLQKYRLY 165 (607)
Q Consensus 111 KpRlvWT~ELH~kFv~AV~qLG~-~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~ 165 (607)
|+|++||+|+|++|++||+.||. +.|+||.|+++|++++||+++|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 68999999999999999999995 99999999999999999999999999999974
No 3
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=98.28 E-value=1.1e-06 Score=88.17 Aligned_cols=48 Identities=31% Similarity=0.385 Sum_probs=45.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
||||+|+.++....+.++++||+|||+|||+++||.++++.++|+...
T Consensus 74 PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~ 121 (229)
T COG0745 74 PIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG 121 (229)
T ss_pred cEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence 799999999999999999999999999999999999999999998644
No 4
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=97.68 E-value=8.3e-05 Score=75.02 Aligned_cols=49 Identities=20% Similarity=0.404 Sum_probs=44.8
Q ss_pred EEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhhh
Q 007341 2 FSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKIDA 50 (607)
Q Consensus 2 VIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~s 50 (607)
||++|+-.+.+++.++++.||.|||+|||..+.|..++.+-.++++...
T Consensus 77 VI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~ 125 (224)
T COG4565 77 VIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALE 125 (224)
T ss_pred EEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999988877766543
No 5
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=97.67 E-value=5.1e-05 Score=75.42 Aligned_cols=48 Identities=25% Similarity=0.455 Sum_probs=45.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||+||++++.....++++.||.|||.|||+.++|...+++++++...
T Consensus 78 PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~ 125 (202)
T COG4566 78 PVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDAS 125 (202)
T ss_pred CEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999987443
No 6
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.62 E-value=9.9e-05 Score=81.53 Aligned_cols=49 Identities=24% Similarity=0.491 Sum_probs=46.5
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
||||||++++.+++.+|++.||.|||.|||+++.|..++++++..++..
T Consensus 78 pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~ 126 (464)
T COG2204 78 PVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQ 126 (464)
T ss_pred CEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhhh
Confidence 8999999999999999999999999999999999999999999876654
No 7
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=97.50 E-value=0.0007 Score=65.88 Aligned_cols=48 Identities=25% Similarity=0.416 Sum_probs=44.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
+||++|+..+...+.++++.||++||.||++.++|...++++...+..
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~ 127 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999998876554
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=97.43 E-value=0.00026 Score=59.76 Aligned_cols=40 Identities=33% Similarity=0.445 Sum_probs=37.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 40 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ 40 (607)
|||++|...+.....++++.||++||.||++.++|..+++
T Consensus 73 ~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 73 PIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp EEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred cEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 5899999999999999999999999999999999998874
No 9
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=97.04 E-value=0.0014 Score=61.64 Aligned_cols=46 Identities=33% Similarity=0.424 Sum_probs=42.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 74 pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 74 PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 7899999999999999999999999999999999999999888753
No 10
>PRK11173 two-component response regulator; Provisional
Probab=96.98 E-value=0.0017 Score=62.37 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=43.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 76 pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 76 ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999988764
No 11
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=96.97 E-value=0.0017 Score=61.03 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=43.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 75 ~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 75 GIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 6899999999999999999999999999999999999999988764
No 12
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=96.96 E-value=0.002 Score=60.76 Aligned_cols=46 Identities=24% Similarity=0.301 Sum_probs=43.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+......++++||++|+.||++.++|..+++.++++.
T Consensus 76 pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 76 PIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred CEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999988764
No 13
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=96.94 E-value=0.0018 Score=61.08 Aligned_cols=45 Identities=31% Similarity=0.391 Sum_probs=42.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++++..+.+...++++.||++|+.||++.++|..+++.++++
T Consensus 74 pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 74 PILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999999999998875
No 14
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=96.93 E-value=0.0019 Score=61.03 Aligned_cols=45 Identities=33% Similarity=0.479 Sum_probs=42.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++++..+.+...++++.||++|+.||++.++|..+++.++++
T Consensus 74 pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 74 PILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred CEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999999999999988865
No 15
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=96.85 E-value=0.0022 Score=49.39 Aligned_cols=48 Identities=31% Similarity=0.322 Sum_probs=41.1
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYR 163 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR 163 (607)
|-.||+|-+++|++||.++|.+ .++.|.+.|+ .+-|..++++|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 4579999999999999999955 6999999999 6679999999998875
No 16
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=96.84 E-value=0.0027 Score=59.03 Aligned_cols=46 Identities=30% Similarity=0.484 Sum_probs=42.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++..+.....+++..||++|+.||++.++|..+++.++++.
T Consensus 74 pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 74 PVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred cEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 6899999999999999999999999999999999999999887653
No 17
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=96.81 E-value=0.0029 Score=59.92 Aligned_cols=45 Identities=31% Similarity=0.501 Sum_probs=42.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++++..+.....+++.+||++|+.||++.++|..+++.++++
T Consensus 78 pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 78 PVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred CEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999988875
No 18
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=96.77 E-value=0.0027 Score=60.65 Aligned_cols=46 Identities=33% Similarity=0.443 Sum_probs=42.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++..+......++..||++||.||++.++|..+++.++++.
T Consensus 79 pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 79 PIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred CEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 7899999999999999999999999999999999999999988763
No 19
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=96.76 E-value=0.0032 Score=58.58 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=42.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+...+++..||++|+.||++.++|..+++.++++
T Consensus 74 ~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (219)
T PRK10336 74 PVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred cEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999988775
No 20
>PLN03029 type-a response regulator protein; Provisional
Probab=96.69 E-value=0.0041 Score=61.57 Aligned_cols=46 Identities=24% Similarity=0.549 Sum_probs=42.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+........+++..||++||.||++..+|..++.++++.+
T Consensus 104 pvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 104 PVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred cEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998887665
No 21
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=96.66 E-value=0.0037 Score=57.94 Aligned_cols=46 Identities=30% Similarity=0.418 Sum_probs=42.5
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++..+.....+++..||++|+.||++.++|...++.++++.
T Consensus 72 ~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 72 PVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred cEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 6899999999999999999999999999999999999999887653
No 22
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=96.65 E-value=0.0039 Score=58.71 Aligned_cols=46 Identities=30% Similarity=0.389 Sum_probs=42.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.....++++.||++||.||++.++|...++.++++.
T Consensus 73 ~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 73 PVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred cEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 6899999999999999999999999999999999999999888764
No 23
>CHL00148 orf27 Ycf27; Reviewed
Probab=96.64 E-value=0.0044 Score=58.62 Aligned_cols=46 Identities=33% Similarity=0.483 Sum_probs=42.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++..+.....+++..||++|+.||++.++|...++.++++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 79 PIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred cEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 6899999999999999999999999999999999999999888654
No 24
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=96.63 E-value=0.0044 Score=58.00 Aligned_cols=45 Identities=27% Similarity=0.400 Sum_probs=42.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++++..+.+...+++..||++|+.||++.++|..+++.++++
T Consensus 73 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 73 PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 689999999999999999999999999999999999999988764
No 25
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=96.61 E-value=0.0047 Score=59.23 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=42.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 74 pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 74 PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 6899999999888999999999999999999999999999888763
No 26
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=96.61 E-value=0.0043 Score=57.67 Aligned_cols=45 Identities=31% Similarity=0.494 Sum_probs=42.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++++..+.....+++..||++|+.||++.++|...++.++++
T Consensus 78 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 78 PIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred CEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999988765
No 27
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=96.56 E-value=0.0041 Score=58.10 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=42.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++..+......++..||++|+.||++.++|..+++.++++.
T Consensus 77 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 77 PVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred CEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 6899999999888999999999999999999999999998887653
No 28
>PRK13856 two-component response regulator VirG; Provisional
Probab=96.56 E-value=0.0051 Score=59.46 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=40.4
Q ss_pred CEEEEcCC-CCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGN-GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~-~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++++. .+.....+++++||++|+.||++.++|..+++.++++.
T Consensus 74 pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 74 PIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred cEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 68999985 46677889999999999999999999999999988763
No 29
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=96.53 E-value=0.0054 Score=56.40 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=42.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||+++.....+....++..||++|+.||++.++|..+++.+++.
T Consensus 74 ~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (196)
T PRK10360 74 ATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred CEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999998865
No 30
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=96.46 E-value=0.0045 Score=68.91 Aligned_cols=48 Identities=31% Similarity=0.520 Sum_probs=44.4
Q ss_pred EEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 2 FSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 2 VIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
+|++|++++-+.+.+|+.+|+.|||+||++.++|..++.+++.+....
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~~ 126 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEEQ 126 (475)
T ss_pred EEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999998765443
No 31
>PRK09581 pleD response regulator PleD; Reviewed
Probab=96.43 E-value=0.0043 Score=64.41 Aligned_cols=46 Identities=28% Similarity=0.459 Sum_probs=42.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|++.+.+.+.+++..||++|+.||+++++|...+...++++
T Consensus 230 ~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~~ 275 (457)
T PRK09581 230 PILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRRK 275 (457)
T ss_pred cEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998776643
No 32
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=96.41 E-value=0.0087 Score=58.70 Aligned_cols=47 Identities=21% Similarity=0.365 Sum_probs=42.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++|+..+...+.+++..||++|+.||++.++|...+.+++.++.
T Consensus 79 ~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~~ 125 (239)
T PRK10430 79 DVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKKM 125 (239)
T ss_pred CEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988766543
No 33
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=96.41 E-value=0.0063 Score=65.15 Aligned_cols=46 Identities=30% Similarity=0.404 Sum_probs=42.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++++++..
T Consensus 75 piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~ 120 (445)
T TIGR02915 75 KVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLY 120 (445)
T ss_pred CEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhh
Confidence 6899999999999999999999999999999999999998887643
No 34
>PRK10693 response regulator of RpoS; Provisional
Probab=96.40 E-value=0.0067 Score=62.71 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=41.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPf-d~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+.+.++++.||++|+.||+ +.++|..+++.+++..
T Consensus 47 piI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~~ 93 (303)
T PRK10693 47 PVLVISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYPS 93 (303)
T ss_pred cEEEEECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhhh
Confidence 799999999999999999999999999999 5999999998887643
No 35
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=96.38 E-value=0.0028 Score=61.70 Aligned_cols=40 Identities=28% Similarity=0.518 Sum_probs=36.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 40 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ 40 (607)
.||++|++++..+...+++.|||+||.||-+.+++...+.
T Consensus 83 rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 83 RIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred eEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 3799999999999999999999999999999999876654
No 36
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=96.35 E-value=0.0081 Score=57.66 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=41.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|...+...+.++++.||++||.||+++++|...|+.+...
T Consensus 82 ~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 82 SIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred cEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 689999999999999999999999999999999999999887654
No 37
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=96.32 E-value=0.0078 Score=55.69 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=41.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++++..+.....+++..||++|+.||++.++|..+++.+++.
T Consensus 75 ~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 119 (204)
T PRK09958 75 IIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 119 (204)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999999999999998765
No 38
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=96.25 E-value=0.016 Score=47.35 Aligned_cols=45 Identities=13% Similarity=0.341 Sum_probs=40.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|+|+++.........+++..|+++|+.||++.+++...+++++++
T Consensus 82 ~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 82 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred cEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 578888888888899999999999999999999999999988765
No 39
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=96.22 E-value=0.0098 Score=54.83 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=41.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++++........+++..||++|+.||++.++|...++.++++
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~ 123 (210)
T PRK09935 79 KVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG 123 (210)
T ss_pred cEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999888764
No 40
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=96.15 E-value=0.013 Score=54.37 Aligned_cols=46 Identities=33% Similarity=0.468 Sum_probs=42.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||+++...+.....+++..||++|+.||++.++|...++.++++.
T Consensus 74 ~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 74 PVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred CEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 6899999999999999999999999999999999999999887754
No 41
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=96.15 E-value=0.0055 Score=65.99 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=41.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+...+++..||++||.||+++.+|+.++...+..+
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999996555443
No 42
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=96.05 E-value=0.012 Score=58.23 Aligned_cols=46 Identities=11% Similarity=0.000 Sum_probs=40.2
Q ss_pred CEEEEcCCCCHHHHHHHH-HcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGI-THGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaL-eaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+.++...+.+++ ++||++||.||+++++|...|+.+++..
T Consensus 70 ~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~ 116 (207)
T PRK11475 70 RRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGV 116 (207)
T ss_pred CEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCC
Confidence 689999988777677766 7999999999999999999999998754
No 43
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=96.01 E-value=0.013 Score=57.85 Aligned_cols=45 Identities=27% Similarity=0.378 Sum_probs=41.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+........++++.|+++|+.||++.++|...++++++.
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999999887654
No 44
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=95.87 E-value=0.015 Score=64.26 Aligned_cols=48 Identities=31% Similarity=0.529 Sum_probs=45.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++++.++...+.+|.+.||.|||.||+...+|..+++..+++++.
T Consensus 208 pii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 208 PIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred cEEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 799999999999999999999999999999999999999999988765
No 45
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=95.85 E-value=0.019 Score=57.36 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=44.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|++.++..+.++++.||.+||+||++..-|+.++.-+..+.+..
T Consensus 79 piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~~ 127 (194)
T COG3707 79 PIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEER 127 (194)
T ss_pred CEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999998887665443
No 46
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=95.79 E-value=0.023 Score=53.83 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=41.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||+++..........++..||++|+.||++.++|..+++.++++
T Consensus 83 pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 83 PIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred CEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 689999999988899999999999999999999999999888765
No 47
>PRK09483 response regulator; Provisional
Probab=95.74 E-value=0.022 Score=53.23 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=42.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||+++...+.....+++..||++|+.||++.++|...++.+++..
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~ 122 (217)
T PRK09483 77 KIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQ 122 (217)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 6899999999999999999999999999999999999998887653
No 48
>PRK09581 pleD response regulator PleD; Reviewed
Probab=95.69 E-value=0.027 Score=58.55 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=43.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++++..+.....+++..||++|+.||++.++|..++..+++.+.
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 124 (457)
T PRK09581 78 PVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKM 124 (457)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999998877543
No 49
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=95.50 E-value=0.031 Score=55.38 Aligned_cols=48 Identities=31% Similarity=0.427 Sum_probs=44.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
+||++|.+.+...+.+++++||++|+.|..++++|...++.+......
T Consensus 76 ~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~ 123 (211)
T COG2197 76 KVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTY 123 (211)
T ss_pred cEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeE
Confidence 589999999999999999999999999999999999999999866543
No 50
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=95.27 E-value=0.04 Score=49.89 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=41.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++++..+......++..|+.+|+.||++.++|...++.+++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 123 (211)
T PRK15369 79 NILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG 123 (211)
T ss_pred cEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 689999999999999999999999999999999999999887654
No 51
>PRK10403 transcriptional regulator NarP; Provisional
Probab=95.14 E-value=0.041 Score=50.44 Aligned_cols=45 Identities=24% Similarity=0.191 Sum_probs=40.5
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|+|+++...+......++..||++|+.||++.++|...++.+++.
T Consensus 82 ~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~ 126 (215)
T PRK10403 82 QIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred eEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence 578899888888999999999999999999999999999887654
No 52
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=95.08 E-value=0.062 Score=46.39 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=36.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EE-LkniwQ~VLRr 45 (607)
|||++|+........+++..|+++|+.||+...+ |...+++.+..
T Consensus 81 pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 81 PVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred CEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 5789999999888888899999999999977666 77777755543
No 53
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=95.05 E-value=0.033 Score=59.75 Aligned_cols=46 Identities=22% Similarity=0.445 Sum_probs=42.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+...+++..||.+|+.||++.++|...+++++...
T Consensus 78 pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~ 123 (457)
T PRK11361 78 PVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 (457)
T ss_pred CEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcccc
Confidence 6899999999999999999999999999999999999988876543
No 54
>PRK13435 response regulator; Provisional
Probab=95.01 E-value=0.037 Score=49.33 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=35.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||+++...+ ...++..||++|+.||++.++|...++++++++.
T Consensus 80 pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 80 EVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred CEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 6788887543 2467789999999999999999999998876543
No 55
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.85 E-value=0.059 Score=58.31 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=42.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+....+++.||.+|+.||++.++|...+++++...
T Consensus 77 pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 77 PVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred eEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999887653
No 56
>PRK10651 transcriptional regulator NarL; Provisional
Probab=94.83 E-value=0.067 Score=49.23 Aligned_cols=45 Identities=27% Similarity=0.325 Sum_probs=41.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||+++...+......++..|+++|+.||++.++|...++.+++.
T Consensus 82 ~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~ 126 (216)
T PRK10651 82 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG 126 (216)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 588999999999999999999999999999999999999998764
No 57
>PRK15115 response regulator GlrR; Provisional
Probab=94.81 E-value=0.041 Score=59.02 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=41.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+...+++..||.+|+.||++.++|..+++.+++.
T Consensus 79 pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 79 PVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred cEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999988764
No 58
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.73 E-value=0.044 Score=63.13 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=41.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+....+...++++.|+++||.||++.++|..++.++++.
T Consensus 743 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 743 PIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 799999999999999999999999999999999999988877653
No 59
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.65 E-value=0.065 Score=57.70 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=42.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.....+++..||.+|+.||++.++|...+++++...
T Consensus 72 ~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 72 PVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred eEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999887653
No 60
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=94.47 E-value=0.072 Score=61.53 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=41.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+...++++.|+++||.||++.++|..++.++++.
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 812 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY 812 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence 689999999999999999999999999999999999999887653
No 61
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=94.44 E-value=0.079 Score=51.04 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=35.8
Q ss_pred EEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 2 FSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 2 VIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
||++|+.. +...++++.||.+||.||++.++|...+.++.+.
T Consensus 77 ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 77 IVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 67777765 4667899999999999999999999999988754
No 62
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=94.36 E-value=0.048 Score=58.08 Aligned_cols=46 Identities=17% Similarity=0.429 Sum_probs=42.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|++.+.+...+++..||.+|+.||++.++|...+++++++.
T Consensus 79 ~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 79 PVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred eEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999888753
No 63
>PRK14084 two-component response regulator; Provisional
Probab=94.35 E-value=0.081 Score=51.45 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=36.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
+||++|+... ...++++.||.+||.||++.++|...++++.++
T Consensus 76 ~iI~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 76 AIIFATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEEEEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 3677777653 567899999999999999999999999988754
No 64
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=94.14 E-value=0.064 Score=48.40 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=41.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||+++...+......++..|+.+|+.||+..+++...++.++..
T Consensus 77 ~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 77 PVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred CEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 688999999999999999999999999999999999988887764
No 65
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=94.12 E-value=0.066 Score=41.13 Aligned_cols=42 Identities=31% Similarity=0.426 Sum_probs=36.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 42 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~V 42 (607)
|+|+++.........+++..|+.+|+.||+..++|...++++
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 71 PIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred CEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 578888877778888899999999999999999998887654
No 66
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=93.80 E-value=0.095 Score=60.83 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=42.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+........+++..|+++||.||++.++|..+++++++.
T Consensus 756 ~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 756 VLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred CEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 689999999999999999999999999999999999999998754
No 67
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=93.67 E-value=0.12 Score=60.31 Aligned_cols=45 Identities=22% Similarity=0.228 Sum_probs=42.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+....+...+++..|+++||.||++.++|..++.+++..
T Consensus 779 pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 779 KFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999999888753
No 68
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=92.92 E-value=0.18 Score=60.66 Aligned_cols=44 Identities=23% Similarity=0.300 Sum_probs=40.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 44 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLR 44 (607)
|||++|+..+.....++++.||++||.||++.++|...++++++
T Consensus 1032 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1032 PIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999988887654
No 69
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=90.52 E-value=0.45 Score=49.66 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=25.5
Q ss_pred CEEEEcCCCC--HHHHHHHHHcCCcEEEeCCC
Q 007341 1 MFSVLSGNGD--PKLVMKGITHGACDYLLKPV 30 (607)
Q Consensus 1 PVIMLSA~~s--~e~VmkaLeaGAdDYLvKPf 30 (607)
|||++++... .....++++.||.+|+.||+
T Consensus 75 pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 75 PILIVTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred cEEEEeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 6888887643 56777899999999999999
No 70
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=90.14 E-value=0.58 Score=46.76 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=36.8
Q ss_pred CEEEEcCCCCHHHHHHHHH--cCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGIT--HGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLe--aGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
+||++|+..+ ....++. .||.+|+.|+.+.++|...|+.+++...
T Consensus 83 ~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~ 129 (216)
T PRK10100 83 KILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGEC 129 (216)
T ss_pred cEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCc
Confidence 5899999877 3445555 4999999999999999999999986543
No 71
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=89.84 E-value=0.56 Score=53.91 Aligned_cols=44 Identities=18% Similarity=0.150 Sum_probs=37.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+.... ...+++..|+++||.||++.++|...+++++..
T Consensus 602 ~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 602 PLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred cEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 57888887654 467889999999999999999999999887643
No 72
>smart00426 TEA TEA domain.
Probab=89.80 E-value=0.27 Score=42.03 Aligned_cols=47 Identities=26% Similarity=0.305 Sum_probs=30.6
Q ss_pred eccHHHHHHHHHHHHHhCCCCCchHHHHhh-------------cC-CCCC--CHHHHHHhhhh
Q 007341 115 VWSVELHRKFVAAVNQLGIDKAVPKKILDL-------------MN-VEKL--TRENVASHLQK 161 (607)
Q Consensus 115 vWT~ELH~kFv~AV~qLG~~kA~Pk~Ilel-------------M~-v~gL--T~enVaSHLQK 161 (607)
+|.+++...|++|+..+-.....+-++... +- ..|. |+.+|+||+|.
T Consensus 5 vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 799999999999999875221111122211 00 1232 89999999995
No 73
>PRK13558 bacterio-opsin activator; Provisional
Probab=88.51 E-value=0.72 Score=52.03 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=37.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHH--HHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIE--ELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~E--ELkniwQ~VLRr 45 (607)
|||++|+..+.+...+++..||.+|+.||.... .+..+++.++..
T Consensus 81 piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 81 PVVVVPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred CEEEEECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 799999999999999999999999999997643 566666655543
No 74
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=87.62 E-value=1.1 Score=47.17 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=25.5
Q ss_pred CEEEEcCCC--CHHHHHHHHHcCCcEEEeCCCC
Q 007341 1 MFSVLSGNG--DPKLVMKGITHGACDYLLKPVR 31 (607)
Q Consensus 1 PVIMLSA~~--s~e~VmkaLeaGAdDYLvKPfd 31 (607)
|||++++.. ......++++.||++||.||+.
T Consensus 78 piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 78 PVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred CEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 688888753 3466778999999999999994
No 75
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.11 E-value=0.4 Score=51.40 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=34.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|++........ ..-++|||+|||.++.|..+|.++.++
T Consensus 74 ~iifIssh~eya~dsf--~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 74 PIIFISSHAEYADDSF--GMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred cEEEEecchhhhhhhc--ccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 6899999887655544 455599999999999998888887743
No 76
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=85.13 E-value=1.4 Score=45.96 Aligned_cols=40 Identities=18% Similarity=0.063 Sum_probs=34.5
Q ss_pred EEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007341 3 SVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 42 (607)
Q Consensus 3 IMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~V 42 (607)
+++....+.+...++++.||.+||.+|++.++|...+..+
T Consensus 46 ~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 46 LVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred EEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 4455566788999999999999999999999999888766
No 77
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=83.08 E-value=0.61 Score=51.86 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=29.3
Q ss_pred CCCceeccHHHHHHHHHHHHHhC-CCCCchH----------HHHhhcCC---CCCCHHHHHHhhhhh
Q 007341 110 KKPRVVWSVELHRKFVAAVNQLG-IDKAVPK----------KILDLMNV---EKLTRENVASHLQKY 162 (607)
Q Consensus 110 kKpRlvWT~ELH~kFv~AV~qLG-~~kA~Pk----------~IlelM~v---~gLT~enVaSHLQKy 162 (607)
.+..-||.+++.+.|++|+..+- ....+-+ .|.+.+-. ..=|+++|+||+|.-
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 45667999999999999999874 2222211 11111111 123999999999998
No 78
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=79.55 E-value=6.2 Score=28.21 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=35.1
Q ss_pred eccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhh
Q 007341 115 VWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 161 (607)
Q Consensus 115 vWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQK 161 (607)
.||.|-++.|+.++..+|. ...+.|.+.|+.. |..+|+.|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~--~~w~~Ia~~~~~r--s~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK--NNWEKIAKELPGR--TPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc--CCHHHHHhHcCCC--CHHHHHHHHHH
Confidence 3999999999999999994 3488999998754 88888886543
No 79
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=76.86 E-value=8.3 Score=27.88 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=34.0
Q ss_pred eeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHh
Q 007341 114 VVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASH 158 (607)
Q Consensus 114 lvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSH 158 (607)
-.||++-++.|+.++.++|. ...+.|.+.|+ +=|..+|+.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~--~~w~~Ia~~~~--~rt~~~~~~~ 42 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK--NNWEKIAKELP--GRTAEQCRER 42 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc--CCHHHHHHHcC--CCCHHHHHHH
Confidence 35999999999999999994 33889998887 4588888874
No 80
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=70.44 E-value=5.3 Score=39.40 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=34.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcE-EEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACD-YLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdD-YLvKPfd~EELkniwQ~VLRr 45 (607)
+||++|+.++..... ++..|+.. |+.|+.++++|...++.+...
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g 123 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKK 123 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcC
Confidence 589999988776543 55556554 899999999999999998654
No 81
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=68.91 E-value=16 Score=38.16 Aligned_cols=65 Identities=25% Similarity=0.384 Sum_probs=49.8
Q ss_pred CCCCCCCCCCCCceecc----HHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhchhh
Q 007341 101 HNHEDPTTQKKPRVVWS----VELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISC 171 (607)
Q Consensus 101 ~e~~~~s~~kKpRlvWT----~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr~s~ 171 (607)
+-+......+|||.+.+ -.|.+||-+.=-. |+|.+- ||--.=|||-.+||--.|--|.++||+..
T Consensus 114 ~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYL-----ALPERA-eLAAsLGLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 114 RPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYL-----ALPERA-ELAASLGLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred ccCCCcccccCCcccccHHHHHHHHHHHhhcchh-----cCcHHH-HHHHHhCCchhHhhhhhhhhHHHHHHHHh
Confidence 45667778899999999 4789999665333 455443 45555699999999999999999998764
No 82
>PRK12704 phosphodiesterase; Provisional
Probab=63.95 E-value=7.3 Score=44.40 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=40.1
Q ss_pred EEEEcCCCCHH--HHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 2 FSVLSGNGDPK--LVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 2 VIMLSA~~s~e--~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
+|+||+++... ....+++.++.|+.+||++++++...++.-+...
T Consensus 252 ~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~~ 298 (520)
T PRK12704 252 AVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDEE 298 (520)
T ss_pred eEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHH
Confidence 68899998887 7888999999999999999999999998877654
No 83
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=57.51 E-value=47 Score=37.07 Aligned_cols=57 Identities=30% Similarity=0.369 Sum_probs=35.2
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcC--------------C---CCCCHHHHHHhhhhh-hhhhhchh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMN--------------V---EKLTRENVASHLQKY-RLYLKRIS 170 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~--------------v---~gLT~enVaSHLQKy-R~~Lkr~s 170 (607)
.=+|+++..+.|.+|+..+-. --+-|.|+..-| . .-=||.+|.||.|.. |..+++|.
T Consensus 76 egvWSpdIEqsFqEALaiypp-cGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVlarrk~reiq 150 (455)
T KOG3841|consen 76 EGVWSPDIEQSFQEALAIYPP-CGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKLREIQ 150 (455)
T ss_pred ccccChhHHHHHHHHHhhcCC-CCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999988631 001123322111 1 123999999999974 34444443
No 84
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=56.17 E-value=8.3 Score=39.40 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=35.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
+||++|+++. ....+.+..|.||+.||+..+.|...+....+.
T Consensus 77 ~Ivfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 77 AIVFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred eEEEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 4788888776 455566889999999999999999999988775
No 85
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=52.50 E-value=24 Score=41.20 Aligned_cols=43 Identities=16% Similarity=0.062 Sum_probs=37.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 43 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VL 43 (607)
++|+++..........+.+.|+++|+.||+...+|...+....
T Consensus 608 ~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 608 FLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred cEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 4677888888888899999999999999999999988876544
No 86
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=44.87 E-value=29 Score=29.63 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=38.1
Q ss_pred eccHHHHHHHHHHHHHh---C-C------CCCchHHHHhhcCC---CCCCHHHHHHhhhhhhhhhhch
Q 007341 115 VWSVELHRKFVAAVNQL---G-I------DKAVPKKILDLMNV---EKLTRENVASHLQKYRLYLKRI 169 (607)
Q Consensus 115 vWT~ELH~kFv~AV~qL---G-~------~kA~Pk~IlelM~v---~gLT~enVaSHLQKyR~~Lkr~ 169 (607)
.||++..+.||+.+.+. | . .+.....|.+.++. ..+|.++|++|+...|...+.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~ 68 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIW 68 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHH
Confidence 49999999999988554 3 2 12234566666665 3569999999988776665443
No 87
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=44.35 E-value=38 Score=37.25 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=26.1
Q ss_pred CEEEEcCCCC--HHHHHHHHHcCCcEEEeCCCC
Q 007341 1 MFSVLSGNGD--PKLVMKGITHGACDYLLKPVR 31 (607)
Q Consensus 1 PVIMLSA~~s--~e~VmkaLeaGAdDYLvKPfd 31 (607)
||||+++-.. .+..++++++||.||+.||..
T Consensus 76 pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 76 PVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 7888887433 578889999999999999985
No 88
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=41.96 E-value=46 Score=28.97 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHcCCcEEEeCCC--CHHHHHHHHHHHHHHh
Q 007341 8 NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRRK 46 (607)
Q Consensus 8 ~~s~e~VmkaLeaGAdDYLvKPf--d~EELkniwQ~VLRrr 46 (607)
....+.+.+++++|..-|+.||+ +.+++..+++.+-+..
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 34456788899999999999999 7899988888776553
No 89
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=33.60 E-value=1.1e+02 Score=24.15 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhh
Q 007341 116 WSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 161 (607)
Q Consensus 116 WT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQK 161 (607)
||.|-.++.+..|...|- .++.|.+.|+ .=|..+|..+...
T Consensus 1 WT~eEd~~L~~~~~~~g~---~W~~Ia~~l~--~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN---DWKKIAEHLG--NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS----HHHHHHHST--TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc---CHHHHHHHHC--cCCHHHHHHHHHH
Confidence 999999999999999884 4999999997 3488888884443
No 90
>PF11888 DUF3408: Protein of unknown function (DUF3408); InterPro: IPR021823 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.
Probab=32.63 E-value=1.5e+02 Score=27.90 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=34.1
Q ss_pred eeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhch
Q 007341 114 VVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRI 169 (607)
Q Consensus 114 lvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr~ 169 (607)
+=-..|+|++...-|..||-.+.+....++.+ ++-||..||--+.++
T Consensus 83 vyI~~e~h~~l~~Iv~~ig~~~~si~~yidNI---------L~~Hle~~~eeI~~l 129 (136)
T PF11888_consen 83 VYISRETHERLSRIVRVIGERKMSISGYIDNI---------LRHHLEEYREEINEL 129 (136)
T ss_pred eEECHHHHHHHHHHHHHHCCCCCcHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 77789999999888888886655544333322 678999999877665
No 91
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=31.21 E-value=26 Score=39.41 Aligned_cols=47 Identities=28% Similarity=0.322 Sum_probs=42.5
Q ss_pred EEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 2 FSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 2 VIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|+|+|+........+++.+||++++.||+....+..+...+.+.+..
T Consensus 61 ~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~~~l~~~k~~ 107 (435)
T COG3706 61 VVMVTALDDSAPRVRGLKAGADDFLTKPVNDSQLFLRAKSLVRLKCS 107 (435)
T ss_pred eEEEEecCCCCcchhHHhhhhhhhccCCCChHHHHHhhhhhccchhh
Confidence 68899999999999999999999999999999999999998876544
No 92
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=23.16 E-value=1.2e+02 Score=34.40 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=40.6
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYR 163 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR 163 (607)
..-||.+-.-.+++|++.+|+.. |.-|.+.|+.. |.++++.|--|+-
T Consensus 72 ~~~WtadEEilLLea~~t~G~GN--W~dIA~hIGtK--tkeeck~hy~k~f 118 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGN--WQDIADHIGTK--TKEECKEHYLKHF 118 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCc--HHHHHHHHccc--chHHHHHHHHHHH
Confidence 34599999999999999999875 88999999966 9999999977743
No 93
>PLN03212 Transcription repressor MYB5; Provisional
Probab=22.05 E-value=1.5e+02 Score=31.48 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=27.8
Q ss_pred CCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcC
Q 007341 111 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMN 146 (607)
Q Consensus 111 KpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~ 146 (607)
.+|-.||+|-+++.+++|+..|. ..++.|.+.|+
T Consensus 23 lKRg~WT~EEDe~L~~lV~kyG~--~nW~~IAk~~g 56 (249)
T PLN03212 23 MKRGPWTVEEDEILVSFIKKEGE--GRWRSLPKRAG 56 (249)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCc--ccHHHHHHhhh
Confidence 45667999999999999999994 34788887775
No 94
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.96 E-value=1.3e+02 Score=28.41 Aligned_cols=49 Identities=27% Similarity=0.298 Sum_probs=42.4
Q ss_pred eccHHHHHHHHHHHHHhCC-CCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhh
Q 007341 115 VWSVELHRKFVAAVNQLGI-DKAVPKKILDLMNVEKLTRENVASHLQKYRLYL 166 (607)
Q Consensus 115 vWT~ELH~kFv~AV~qLG~-~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~L 166 (607)
.|.+|--+++++.+-.++. ...+--+|+++|.. |..+++|-|-|+|..+
T Consensus 47 kldpe~a~e~veEL~~i~~~~e~~avkIadI~P~---t~~ElRsIla~e~~~~ 96 (114)
T COG1460 47 KLDPEKARELVEELLSIVKMSEKIAVKIADIMPR---TPDELRSILAKERVML 96 (114)
T ss_pred cCCHHHHHHHHHHHHhhccccHHHHHHHHHhCCC---CHHHHHHHHHHccCCC
Confidence 4788889999999999884 77777889999988 8999999999998765
Done!