Query 007341
Match_columns 607
No_of_seqs 295 out of 2012
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 23:21:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 6.8E-27 2.3E-31 191.2 7.1 64 107-170 1-64 (64)
2 3to5_A CHEY homolog; alpha(5)b 98.2 1E-06 3.4E-11 79.7 5.7 45 1-45 89-133 (134)
3 3gl9_A Response regulator; bet 97.9 1.8E-05 6E-10 66.9 6.5 44 1-44 78-121 (122)
4 3f6p_A Transcriptional regulat 97.9 1.2E-05 4.3E-10 67.4 5.5 45 1-45 75-119 (120)
5 3t6k_A Response regulator rece 97.9 1.8E-05 6.2E-10 68.0 6.6 48 1-48 80-127 (136)
6 3h1g_A Chemotaxis protein CHEY 97.9 1.7E-05 5.8E-10 67.3 5.8 45 1-45 83-127 (129)
7 2pl1_A Transcriptional regulat 97.9 3.7E-05 1.3E-09 63.5 7.6 46 1-46 74-119 (121)
8 3jte_A Response regulator rece 97.8 4.4E-05 1.5E-09 65.2 7.1 49 1-49 79-127 (143)
9 1jbe_A Chemotaxis protein CHEY 97.8 5.5E-05 1.9E-09 63.3 7.4 46 1-46 81-126 (128)
10 3cfy_A Putative LUXO repressor 97.8 5.6E-05 1.9E-09 65.0 7.6 49 1-49 78-126 (137)
11 3kto_A Response regulator rece 97.8 5E-05 1.7E-09 64.9 7.3 48 1-48 82-129 (136)
12 2a9o_A Response regulator; ess 97.8 4.3E-05 1.5E-09 62.8 6.6 45 1-45 74-118 (120)
13 1zgz_A Torcad operon transcrip 97.8 4.5E-05 1.5E-09 63.3 6.8 45 1-45 75-119 (122)
14 2qzj_A Two-component response 97.8 5.7E-05 1.9E-09 64.9 7.6 47 1-47 77-123 (136)
15 2r25_B Osmosensing histidine p 97.8 3E-05 1E-09 66.4 5.6 45 1-45 83-127 (133)
16 1zh2_A KDP operon transcriptio 97.7 6.2E-05 2.1E-09 61.9 7.3 46 1-46 74-119 (121)
17 3crn_A Response regulator rece 97.7 5.9E-05 2E-09 64.1 7.3 49 1-49 77-125 (132)
18 3kht_A Response regulator; PSI 97.7 6.4E-05 2.2E-09 64.5 7.6 48 1-48 83-131 (144)
19 1dbw_A Transcriptional regulat 97.7 4.1E-05 1.4E-09 64.2 6.2 45 1-45 77-121 (126)
20 3lua_A Response regulator rece 97.7 3.3E-05 1.1E-09 66.0 5.6 49 1-49 83-131 (140)
21 1k68_A Phytochrome response re 97.7 7.9E-05 2.7E-09 62.5 7.6 47 1-47 87-133 (140)
22 4dad_A Putative pilus assembly 97.7 3.3E-05 1.1E-09 66.4 5.3 46 1-46 97-142 (146)
23 2zay_A Response regulator rece 97.7 6.6E-05 2.2E-09 64.4 7.1 48 1-48 84-131 (147)
24 1xhf_A DYE resistance, aerobic 97.7 6.6E-05 2.3E-09 62.3 6.8 46 1-46 76-121 (123)
25 3snk_A Response regulator CHEY 97.7 4.5E-05 1.6E-09 64.9 5.9 45 1-45 89-133 (135)
26 3hv2_A Response regulator/HD d 97.7 8.1E-05 2.8E-09 64.8 7.2 49 1-49 88-137 (153)
27 1i3c_A Response regulator RCP1 97.7 8.8E-05 3E-09 64.5 7.4 46 1-46 93-138 (149)
28 3gt7_A Sensor protein; structu 97.7 7.7E-05 2.6E-09 65.4 7.0 48 1-48 83-130 (154)
29 3b2n_A Uncharacterized protein 97.7 5.9E-05 2E-09 64.2 6.0 48 1-48 79-126 (133)
30 3cg0_A Response regulator rece 97.7 9.5E-05 3.3E-09 62.5 7.2 49 1-49 84-132 (140)
31 1tmy_A CHEY protein, TMY; chem 97.6 7.7E-05 2.6E-09 61.6 6.3 43 1-43 77-119 (120)
32 3eod_A Protein HNR; response r 97.6 5.4E-05 1.8E-09 63.6 5.4 47 1-47 81-128 (130)
33 1k66_A Phytochrome response re 97.6 0.00012 4.3E-09 62.1 7.6 47 1-47 94-140 (149)
34 3hdg_A Uncharacterized protein 97.6 6E-05 2E-09 63.9 5.6 49 1-49 81-129 (137)
35 3cnb_A DNA-binding response re 97.6 8.1E-05 2.8E-09 63.0 6.4 48 1-48 86-133 (143)
36 1p6q_A CHEY2; chemotaxis, sign 97.6 4.5E-05 1.5E-09 63.9 4.4 45 1-45 83-127 (129)
37 1dz3_A Stage 0 sporulation pro 97.6 4.3E-05 1.5E-09 64.4 4.3 46 1-46 79-124 (130)
38 1dcf_A ETR1 protein; beta-alph 97.6 5.7E-05 1.9E-09 64.2 4.9 44 2-45 86-129 (136)
39 3heb_A Response regulator rece 97.6 0.00014 4.7E-09 63.1 7.4 45 1-45 91-135 (152)
40 4e7p_A Response regulator; DNA 97.6 7.4E-05 2.5E-09 64.9 5.7 48 1-48 96-143 (150)
41 3n53_A Response regulator rece 97.6 3.8E-05 1.3E-09 65.6 3.7 50 1-50 78-127 (140)
42 3rqi_A Response regulator prot 97.6 5.9E-05 2E-09 68.6 5.0 48 1-48 81-128 (184)
43 3eul_A Possible nitrate/nitrit 97.6 9.9E-05 3.4E-09 64.0 6.2 49 1-49 91-139 (152)
44 3m6m_D Sensory/regulatory prot 97.6 0.00011 3.7E-09 63.8 6.4 45 1-45 92-136 (143)
45 3r0j_A Possible two component 97.6 0.00012 4E-09 69.7 7.2 46 1-46 97-142 (250)
46 1srr_A SPO0F, sporulation resp 97.6 5.4E-05 1.9E-09 63.1 4.2 45 1-45 77-121 (124)
47 3hdv_A Response regulator; PSI 97.5 0.00011 3.7E-09 62.3 6.0 48 1-48 83-130 (136)
48 2pln_A HP1043, response regula 97.5 9.4E-05 3.2E-09 62.9 5.5 46 1-46 88-134 (137)
49 3nhm_A Response regulator; pro 97.5 7.9E-05 2.7E-09 62.7 4.9 47 1-48 79-125 (133)
50 2jba_A Phosphate regulon trans 97.5 3.7E-05 1.3E-09 64.0 2.8 45 1-45 78-122 (127)
51 1qo0_D AMIR; binding protein, 97.5 0.00012 4.2E-09 66.6 6.5 48 1-48 81-128 (196)
52 2qxy_A Response regulator; reg 97.5 0.00011 3.8E-09 62.7 5.7 48 1-48 77-124 (142)
53 1qkk_A DCTD, C4-dicarboxylate 97.5 0.00018 6E-09 62.7 7.1 48 1-48 77-124 (155)
54 3h5i_A Response regulator/sens 97.5 3.2E-05 1.1E-09 66.4 2.2 49 1-49 80-128 (140)
55 3f6c_A Positive transcription 97.5 5E-05 1.7E-09 64.0 3.1 48 1-48 76-123 (134)
56 1mb3_A Cell division response 97.5 6.7E-05 2.3E-09 62.2 3.8 45 1-45 77-121 (124)
57 3kcn_A Adenylate cyclase homol 97.5 0.00015 5.2E-09 63.0 6.2 49 1-49 78-127 (151)
58 2rjn_A Response regulator rece 97.5 0.00021 7.3E-09 62.0 7.1 49 1-49 81-130 (154)
59 2qr3_A Two-component system re 97.5 9.3E-05 3.2E-09 62.6 4.6 48 1-48 82-129 (140)
60 1mvo_A PHOP response regulator 97.5 9.2E-05 3.1E-09 62.5 4.6 47 1-47 77-123 (136)
61 3cu5_A Two component transcrip 97.4 6.5E-05 2.2E-09 64.9 3.1 48 1-48 79-126 (141)
62 3grc_A Sensor protein, kinase; 97.4 6.6E-05 2.3E-09 63.9 2.8 49 1-49 82-131 (140)
63 3q9s_A DNA-binding response re 97.4 0.00017 5.8E-09 69.4 5.7 46 1-46 110-155 (249)
64 3cz5_A Two-component response 97.4 0.00016 5.6E-09 62.7 5.0 48 1-48 81-128 (153)
65 1s8n_A Putative antiterminator 97.4 0.00014 4.7E-09 66.8 4.6 48 1-48 87-134 (205)
66 1a04_A Nitrate/nitrite respons 97.3 0.00026 9E-09 65.2 6.4 46 1-46 81-126 (215)
67 3ilh_A Two component response 97.3 0.00021 7.3E-09 60.6 5.3 46 1-46 94-140 (146)
68 1p2f_A Response regulator; DRR 97.3 0.00038 1.3E-08 64.3 6.6 46 1-46 73-118 (220)
69 1yio_A Response regulatory pro 97.3 0.00016 5.6E-09 66.0 4.1 48 1-48 78-125 (208)
70 2jk1_A HUPR, hydrogenase trans 97.2 0.00042 1.4E-08 59.1 6.2 47 1-47 74-121 (139)
71 3cg4_A Response regulator rece 97.2 6.1E-05 2.1E-09 64.1 0.9 49 1-49 83-131 (142)
72 2qvg_A Two component response 97.2 0.00037 1.3E-08 59.3 5.6 45 1-45 91-135 (143)
73 1kgs_A DRRD, DNA binding respo 97.2 0.00027 9.2E-09 65.2 5.0 46 1-46 76-121 (225)
74 1w25_A Stalked-cell differenti 97.2 0.00049 1.7E-08 71.3 7.4 48 1-48 77-124 (459)
75 3dzd_A Transcriptional regulat 97.2 0.00031 1.1E-08 72.7 5.8 46 1-46 74-119 (368)
76 2hqr_A Putative transcriptiona 97.2 0.00028 9.7E-09 65.3 4.6 46 1-46 70-116 (223)
77 2qsj_A DNA-binding response re 97.2 0.00014 4.8E-09 63.0 2.2 48 1-48 80-127 (154)
78 2qv0_A Protein MRKE; structura 97.1 0.00067 2.3E-08 57.8 6.4 47 1-49 85-131 (143)
79 1ny5_A Transcriptional regulat 97.1 0.00053 1.8E-08 71.3 6.6 48 1-48 74-121 (387)
80 2gkg_A Response regulator homo 97.1 0.00028 9.6E-09 58.1 3.4 44 1-45 82-125 (127)
81 3c3m_A Response regulator rece 97.1 0.00029 9.9E-09 60.3 3.6 47 1-47 79-125 (138)
82 3klo_A Transcriptional regulat 97.1 0.00016 5.4E-09 67.6 2.1 46 1-46 85-130 (225)
83 3i42_A Response regulator rece 97.1 0.00017 5.9E-09 60.3 2.0 45 1-46 79-123 (127)
84 1dc7_A NTRC, nitrogen regulati 97.0 4.4E-05 1.5E-09 62.9 -2.1 46 1-46 77-122 (124)
85 3lte_A Response regulator; str 97.0 0.00075 2.6E-08 56.6 5.2 45 2-47 83-127 (132)
86 3bre_A Probable two-component 97.0 0.0012 4.3E-08 65.5 7.6 44 1-44 95-138 (358)
87 1ys7_A Transcriptional regulat 97.0 0.00026 8.9E-09 65.7 2.4 47 1-47 81-127 (233)
88 3eqz_A Response regulator; str 97.0 0.00047 1.6E-08 57.7 3.8 46 1-46 76-126 (135)
89 2oqr_A Sensory transduction pr 96.9 0.0004 1.4E-08 64.5 3.0 46 1-46 77-122 (230)
90 3eq2_A Probable two-component 96.9 0.00078 2.7E-08 68.7 5.1 48 1-48 79-127 (394)
91 2gwr_A DNA-binding response re 96.9 0.00038 1.3E-08 65.6 2.5 45 1-45 78-122 (238)
92 3c3w_A Two component transcrip 96.7 0.00029 9.9E-09 66.1 0.5 48 1-48 77-124 (225)
93 3a10_A Response regulator; pho 96.7 0.0004 1.4E-08 56.9 1.3 41 1-43 75-115 (116)
94 2lpm_A Two-component response 96.3 0.0001 3.6E-09 65.9 -5.2 41 1-44 81-121 (123)
95 2rdm_A Response regulator rece 96.3 0.0028 9.7E-08 52.8 3.9 45 1-47 81-125 (132)
96 2j48_A Two-component sensor ki 96.3 0.00052 1.8E-08 55.3 -0.7 41 1-44 77-117 (119)
97 3kyj_B CHEY6 protein, putative 95.8 0.001 3.6E-08 57.1 -1.0 42 1-42 89-132 (145)
98 3c97_A Signal transduction his 95.8 0.0022 7.7E-08 54.7 1.1 45 1-48 89-133 (140)
99 3luf_A Two-component system re 95.8 0.015 5.1E-07 56.5 7.0 39 1-40 76-114 (259)
100 3t8y_A CHEB, chemotaxis respon 95.7 0.0069 2.4E-07 53.7 3.7 35 1-35 100-136 (164)
101 3sy8_A ROCR; TIM barrel phosph 95.4 0.0051 1.7E-07 63.5 2.0 47 1-47 79-130 (400)
102 2vyc_A Biodegradative arginine 95.3 0.0049 1.7E-07 69.8 1.7 46 1-46 87-134 (755)
103 1a2o_A CHEB methylesterase; ba 95.0 0.02 7E-07 58.9 5.2 46 1-46 78-134 (349)
104 2yum_A ZZZ3 protein, zinc fing 94.6 0.062 2.1E-06 43.9 6.1 52 112-165 7-61 (75)
105 2b4a_A BH3024; flavodoxin-like 94.1 0.0045 1.6E-07 52.4 -1.9 42 1-46 90-132 (138)
106 2yus_A SWI/SNF-related matrix- 93.8 0.19 6.6E-06 42.1 7.6 46 112-162 17-62 (79)
107 1w25_A Stalked-cell differenti 93.6 0.14 4.9E-06 52.8 8.0 49 1-49 226-274 (459)
108 3cwo_X Beta/alpha-barrel prote 92.5 0.092 3.2E-06 48.3 4.1 45 1-45 55-101 (237)
109 2cu7_A KIAA1915 protein; nucle 92.5 0.28 9.7E-06 39.8 6.6 48 111-163 7-54 (72)
110 3sjm_A Telomeric repeat-bindin 91.1 0.49 1.7E-05 38.0 6.4 52 111-167 9-60 (64)
111 2iw5_B Protein corest, REST co 90.8 0.37 1.2E-05 48.3 6.5 55 107-166 127-181 (235)
112 2xag_B REST corepressor 1; ami 90.2 0.38 1.3E-05 52.6 6.5 52 111-167 378-429 (482)
113 1x41_A Transcriptional adaptor 89.9 0.74 2.5E-05 36.1 6.3 48 111-162 6-53 (60)
114 2hzd_A Transcriptional enhance 87.6 0.55 1.9E-05 40.2 4.4 55 112-168 5-77 (82)
115 2cqr_A RSGI RUH-043, DNAJ homo 86.8 1.6 5.4E-05 36.2 6.6 47 113-161 18-65 (73)
116 1ity_A TRF1; helix-turn-helix, 86.2 2.2 7.5E-05 34.2 7.1 55 109-168 6-60 (69)
117 2elk_A SPCC24B10.08C protein; 86.1 1.3 4.4E-05 34.6 5.5 45 114-162 10-55 (58)
118 2cqq_A RSGI RUH-037, DNAJ homo 85.7 1.6 5.5E-05 36.0 6.1 47 113-162 8-55 (72)
119 2aje_A Telomere repeat-binding 79.5 3.8 0.00013 36.3 6.5 56 108-168 8-65 (105)
120 1w0t_A Telomeric repeat bindin 79.4 5.2 0.00018 30.4 6.4 50 113-167 2-51 (53)
121 3q7r_A Transcriptional regulat 78.8 4.8 0.00016 36.2 6.8 43 2-45 76-118 (121)
122 1x58_A Hypothetical protein 49 78.6 5.5 0.00019 32.5 6.6 56 110-171 5-61 (62)
123 2d9a_A B-MYB, MYB-related prot 78.5 6 0.0002 30.6 6.6 51 110-167 5-55 (60)
124 2eqr_A N-COR1, N-COR, nuclear 75.0 7.4 0.00025 30.6 6.4 43 111-158 10-52 (61)
125 2cjj_A Radialis; plant develop 73.2 6.1 0.00021 34.1 5.9 49 115-165 10-59 (93)
126 1guu_A C-MYB, MYB proto-oncoge 71.3 9 0.00031 28.7 5.8 44 113-160 3-46 (52)
127 2roh_A RTBP1, telomere binding 68.4 15 0.00052 33.3 7.6 55 109-168 27-83 (122)
128 2juh_A Telomere binding protei 66.2 11 0.00039 34.1 6.3 56 108-168 12-69 (121)
129 2ckx_A NGTRF1, telomere bindin 66.2 10 0.00036 32.0 5.7 49 115-168 2-52 (83)
130 2yqk_A Arginine-glutamic acid 65.1 16 0.00054 29.0 6.3 45 109-158 5-50 (63)
131 1gvd_A MYB proto-oncogene prot 63.1 16 0.00056 27.3 5.8 45 113-161 3-47 (52)
132 2dim_A Cell division cycle 5-l 61.5 23 0.0008 28.1 6.8 51 110-167 6-56 (70)
133 2din_A Cell division cycle 5-l 61.4 15 0.00052 28.9 5.6 44 112-161 8-51 (66)
134 1gv2_A C-MYB, MYB proto-oncoge 60.7 17 0.00059 30.8 6.2 48 113-168 56-103 (105)
135 1h8a_C AMV V-MYB, MYB transfor 57.5 15 0.00052 32.3 5.5 47 114-168 80-126 (128)
136 1wgx_A KIAA1903 protein; MYB D 56.4 20 0.0007 29.8 5.7 45 115-161 10-55 (73)
137 3osg_A MYB21; transcription-DN 55.8 17 0.00059 32.1 5.6 47 115-169 64-110 (126)
138 2k9n_A MYB24; R2R3 domain, DNA 55.7 17 0.00056 31.3 5.3 47 114-168 54-100 (107)
139 2llk_A Cyclin-D-binding MYB-li 53.0 25 0.00084 29.1 5.6 41 112-158 22-62 (73)
140 3osg_A MYB21; transcription-DN 51.4 29 0.00099 30.6 6.3 45 110-159 8-52 (126)
141 2ltp_A Nuclear receptor corepr 51.2 4.5 0.00015 34.3 0.0 50 112-169 15-64 (89)
142 2crg_A Metastasis associated p 42.8 56 0.0019 26.4 6.2 45 110-159 5-50 (70)
143 3zqc_A MYB3; transcription-DNA 42.7 33 0.0011 30.4 5.3 46 115-168 56-101 (131)
144 1gv2_A C-MYB, MYB proto-oncoge 42.0 46 0.0016 28.1 5.9 45 113-161 4-48 (105)
145 1h89_C C-MYB, MYB proto-oncoge 38.7 50 0.0017 30.0 6.0 48 113-168 110-157 (159)
146 4eef_G F-HB80.4, designed hema 37.6 13 0.00044 31.4 1.6 46 114-161 21-67 (74)
147 1h8a_C AMV V-MYB, MYB transfor 34.7 77 0.0026 27.7 6.4 44 113-160 27-70 (128)
148 4gmf_A Yersiniabactin biosynth 29.7 74 0.0025 33.0 6.2 35 11-45 84-118 (372)
149 3cwo_X Beta/alpha-barrel prote 29.7 48 0.0016 30.0 4.2 28 1-28 176-203 (237)
150 2k9n_A MYB24; R2R3 domain, DNA 26.8 1.1E+02 0.0037 26.1 5.7 46 114-166 2-47 (107)
151 1h89_C C-MYB, MYB proto-oncoge 24.4 1.4E+02 0.0047 27.0 6.3 43 113-159 58-100 (159)
152 3lsg_A Two-component response 22.6 90 0.0031 25.5 4.3 31 140-170 10-40 (103)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.93 E-value=6.8e-27 Score=191.18 Aligned_cols=64 Identities=73% Similarity=1.150 Sum_probs=61.4
Q ss_pred CCCCCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhchh
Q 007341 107 TTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRIS 170 (607)
Q Consensus 107 s~~kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr~s 170 (607)
++.+|||++||+|||++||+||++||.++|+||.|+++|+|+|||++||+|||||||++++|++
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~~ 64 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVS 64 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHccC
Confidence 3578999999999999999999999999999999999999999999999999999999999864
No 2
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=98.24 E-value=1e-06 Score=79.74 Aligned_cols=45 Identities=16% Similarity=0.376 Sum_probs=42.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+.+.+++++||++||.|||++++|..+++++++|
T Consensus 89 pvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 89 PVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999998765
No 3
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=97.90 E-value=1.8e-05 Score=66.88 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=41.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 44 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLR 44 (607)
|||++|+..+.+...++++.||++||.||+++++|..+++++++
T Consensus 78 pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 78 PVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999998864
No 4
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=97.89 E-value=1.2e-05 Score=67.43 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=42.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 75 ~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 75 PIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp CEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999988764
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=97.89 E-value=1.8e-05 Score=68.01 Aligned_cols=48 Identities=31% Similarity=0.472 Sum_probs=43.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.....++++.||++||.||++.++|..+++.++++...
T Consensus 80 pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 80 PILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTI 127 (136)
T ss_dssp CEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC---
T ss_pred cEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCC
Confidence 699999999999999999999999999999999999999999876543
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=97.86 E-value=1.7e-05 Score=67.25 Aligned_cols=45 Identities=20% Similarity=0.386 Sum_probs=42.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+...+.++++.||++||.||++.++|..+++.++++
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 83 PIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred eEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999999988753
No 7
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=97.85 E-value=3.7e-05 Score=63.52 Aligned_cols=46 Identities=30% Similarity=0.388 Sum_probs=43.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.....++++.||++|+.||++.++|..++++++++.
T Consensus 74 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 74 PILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999998763
No 8
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=97.78 E-value=4.4e-05 Score=65.22 Aligned_cols=49 Identities=31% Similarity=0.522 Sum_probs=45.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++++..
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 79 AVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp EEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999887664
No 9
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=97.77 E-value=5.5e-05 Score=63.27 Aligned_cols=46 Identities=13% Similarity=0.319 Sum_probs=43.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+...++++.||++|+.||++.++|..++++++++.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999998753
No 10
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.77 E-value=5.6e-05 Score=65.03 Aligned_cols=49 Identities=27% Similarity=0.441 Sum_probs=44.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++.+..
T Consensus 78 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~~ 126 (137)
T 3cfy_A 78 SVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLE 126 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999998765443
No 11
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=97.77 E-value=5e-05 Score=64.88 Aligned_cols=48 Identities=19% Similarity=0.232 Sum_probs=44.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..+++++++....
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 82 PTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 799999999999999999999999999999999999999999887544
No 12
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=97.77 E-value=4.3e-05 Score=62.81 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=42.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 74 ~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 74 PILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred CEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 689999999999999999999999999999999999999998765
No 13
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=97.77 E-value=4.5e-05 Score=63.27 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=42.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.....++++.||++|+.||++.++|..++++++++
T Consensus 75 ~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 75 GIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999876
No 14
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=97.76 E-value=5.7e-05 Score=64.90 Aligned_cols=47 Identities=21% Similarity=0.407 Sum_probs=43.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 77 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 77 PIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999987643
No 15
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=97.75 E-value=3e-05 Score=66.39 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=41.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+...++++.||++||.||++.++|..++++++..
T Consensus 83 ~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 83 PIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999999999999999999999999887643
No 16
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=97.75 E-value=6.2e-05 Score=61.95 Aligned_cols=46 Identities=33% Similarity=0.424 Sum_probs=42.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.....++++.||++|+.||++.++|..+++.++++.
T Consensus 74 ~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 74 PVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999988753
No 17
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=97.74 E-value=5.9e-05 Score=64.13 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=44.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++....
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~~ 125 (132)
T 3crn_A 77 KKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEKE 125 (132)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcccCC
Confidence 5899999999999999999999999999999999999999998765543
No 18
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=97.74 E-value=6.4e-05 Score=64.47 Aligned_cols=48 Identities=10% Similarity=0.064 Sum_probs=45.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPf-d~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+.+.++++.||++||.||+ +.++|..+++.++++...
T Consensus 83 pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~ 131 (144)
T 3kht_A 83 PIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT 131 (144)
T ss_dssp CEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999 999999999999987544
No 19
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=97.74 E-value=4.1e-05 Score=64.23 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=42.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 77 PSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999998764
No 20
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=97.73 E-value=3.3e-05 Score=65.95 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=43.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++....
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQRF 131 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC----
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcccc
Confidence 7999999999999999999999999999999999999999998765443
No 21
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=97.72 E-value=7.9e-05 Score=62.48 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=44.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..++++++++..
T Consensus 87 pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 87 PVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 69999999999999999999999999999999999999999987654
No 22
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=97.71 E-value=3.3e-05 Score=66.41 Aligned_cols=46 Identities=11% Similarity=0.226 Sum_probs=43.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..+++++++++
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 5899999999999999999999999999999999999999998764
No 23
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=97.71 E-value=6.6e-05 Score=64.45 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=44.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.....++++.||++||.||++.++|..++++++++.+.
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 131 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE 131 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999887544
No 24
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=97.70 E-value=6.6e-05 Score=62.33 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=42.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 76 ALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp EEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999988753
No 25
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=97.70 E-value=4.5e-05 Score=64.89 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=41.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++++++.
T Consensus 89 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 89 PLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 799999999999999999999999999999999999999888754
No 26
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=97.67 E-value=8.1e-05 Score=64.84 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=45.5
Q ss_pred CEEEEcCCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaG-AdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+...+++..| |++||.||++.++|..++++++++++..
T Consensus 88 ~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 137 (153)
T 3hv2_A 88 TRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHSE 137 (153)
T ss_dssp EEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHHH
Confidence 689999999999999999999 9999999999999999999999876554
No 27
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=97.67 E-value=8.8e-05 Score=64.49 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=42.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.+++..
T Consensus 93 piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 93 PVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999997653
No 28
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=97.66 E-value=7.7e-05 Score=65.41 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=44.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++.+.
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 83 PVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp CEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999999987544
No 29
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=97.66 E-value=5.9e-05 Score=64.21 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=42.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...+++..||++||.||++.++|..+++++++....
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 79 KVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred cEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 689999999999999999999999999999999999999998865443
No 30
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=97.65 E-value=9.5e-05 Score=62.54 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=45.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+...++++.||++||.||++.++|..++++++++....
T Consensus 84 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 84 PIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp CEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 7999999999999999999999999999999999999999999876543
No 31
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=97.64 E-value=7.7e-05 Score=61.64 Aligned_cols=43 Identities=26% Similarity=0.427 Sum_probs=40.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 43 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VL 43 (607)
|||++|+..+.+...++++.||++|+.||++.++|..++++++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 77 KIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred eEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999988764
No 32
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=97.64 E-value=5.4e-05 Score=63.64 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=40.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPf-d~EELkniwQ~VLRrrk 47 (607)
|||++|+..+.+...++++.||++||.||+ +.++|..+++++++++.
T Consensus 81 ~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~~ 128 (130)
T 3eod_A 81 PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 (130)
T ss_dssp CEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC---
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchhh
Confidence 689999999999999999999999999999 89999999999987653
No 33
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=97.63 E-value=0.00012 Score=62.08 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=43.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 94 ~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 94 PVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999987643
No 34
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=97.63 E-value=6e-05 Score=63.94 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=45.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++++++.....
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~~ 129 (137)
T 3hdg_A 81 YVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129 (137)
T ss_dssp EEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999999999876553
No 35
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=97.63 E-value=8.1e-05 Score=63.02 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=43.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.....++++.||++||.||++.++|..++++++++...
T Consensus 86 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 86 IVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred cEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 589999999999999999999999999999999999999999976543
No 36
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=97.60 E-value=4.5e-05 Score=63.87 Aligned_cols=45 Identities=36% Similarity=0.510 Sum_probs=42.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999999998764
No 37
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=97.60 E-value=4.3e-05 Score=64.43 Aligned_cols=46 Identities=24% Similarity=0.412 Sum_probs=42.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 79 NVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred cEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999999999988653
No 38
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=97.59 E-value=5.7e-05 Score=64.20 Aligned_cols=44 Identities=27% Similarity=0.488 Sum_probs=40.7
Q ss_pred EEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 2 FSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 2 VIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
||++|+..+.....++++.||++||.||++.++|..+++++++.
T Consensus 86 ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 86 LVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp EEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 67899999999999999999999999999999999999988754
No 39
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=97.59 E-value=0.00014 Score=63.15 Aligned_cols=45 Identities=22% Similarity=0.297 Sum_probs=42.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+...+.++++.||++||.||++.++|..+++++.+.
T Consensus 91 pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 135 (152)
T 3heb_A 91 PVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLF 135 (152)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999654
No 40
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=97.59 E-value=7.4e-05 Score=64.85 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=44.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...++++.||++||.||++.++|..++++++++++.
T Consensus 96 ~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 143 (150)
T 4e7p_A 96 KVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKE 143 (150)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCE
T ss_pred eEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 689999999999999999999999999999999999999999886544
No 41
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=97.58 E-value=3.8e-05 Score=65.60 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=42.5
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKIDA 50 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~s 50 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.+++++....
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 127 (140)
T 3n53_A 78 PLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
T ss_dssp CEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHHHH
Confidence 68999999999999999999999999999999999999999998876654
No 42
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=97.56 E-value=5.9e-05 Score=68.58 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=44.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+.+.++++.||++||.||+++++|..+++.++++...
T Consensus 81 ~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 128 (184)
T 3rqi_A 81 RILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQA 128 (184)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhhh
Confidence 689999999999999999999999999999999999999998876544
No 43
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=97.56 E-value=9.9e-05 Score=64.05 Aligned_cols=49 Identities=18% Similarity=0.371 Sum_probs=43.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+...+.++++.||++||.||++.++|..+++.+++++...
T Consensus 91 ~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 91 RVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp EEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred eEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 5899999999999999999999999999999999999999999876543
No 44
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=97.56 E-value=0.00011 Score=63.83 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=40.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+.+.++++.||++||.||++.++|...++.+...
T Consensus 92 pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 92 PVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred eEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999887654
No 45
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=97.56 E-value=0.00012 Score=69.73 Aligned_cols=46 Identities=26% Similarity=0.389 Sum_probs=43.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+.+.+++++||++||.||++.++|..+++.++++.
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 97 PALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp CEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999864
No 46
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=97.55 E-value=5.4e-05 Score=63.12 Aligned_cols=45 Identities=16% Similarity=0.327 Sum_probs=41.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++++++.
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 77 RVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred CEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999887643
No 47
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=97.54 E-value=0.00011 Score=62.28 Aligned_cols=48 Identities=25% Similarity=0.384 Sum_probs=42.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...++++.||++||.||++.++|..++++++.....
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 83 SIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred CEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 589999999999999999999999999999999999999998876443
No 48
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=97.53 E-value=9.4e-05 Score=62.91 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=41.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPf-d~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+...++++.||++||.||+ +.++|..+++++++++
T Consensus 88 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 589999999999999999999999999999 9999999999987653
No 49
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=97.53 E-value=7.9e-05 Score=62.70 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=38.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+... .+++..||++||.||++.++|..+++.++++...
T Consensus 79 pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 79 PVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp CEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 6899999988777 8899999999999999999999999999987654
No 50
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=97.52 E-value=3.7e-05 Score=64.01 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=42.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.+...++++.||++|+.||++.++|..+++.++++
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 78 PVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp CEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999998865
No 51
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=97.52 E-value=0.00012 Score=66.61 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=44.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+.+.++++.||++||.||++.++|...++.++++...
T Consensus 81 ~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~~ 128 (196)
T 1qo0_D 81 TLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISEE 128 (196)
T ss_dssp EEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999998876543
No 52
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=97.52 E-value=0.00011 Score=62.67 Aligned_cols=48 Identities=29% Similarity=0.504 Sum_probs=42.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...+++..||++||.||++.++|..++++++++...
T Consensus 77 pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 124 (142)
T 2qxy_A 77 KVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTPR 124 (142)
T ss_dssp EEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC---
T ss_pred CEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhccc
Confidence 689999999999999999999999999999999999999999876544
No 53
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=97.51 E-value=0.00018 Score=62.65 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=44.5
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.....+++..||++||.||++.++|..++++++++++.
T Consensus 77 pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 77 PMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp CEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999876554
No 54
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=97.50 E-value=3.2e-05 Score=66.42 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=45.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..++++++++.+..
T Consensus 80 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~~ 128 (140)
T 3h5i_A 80 PVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEAN 128 (140)
T ss_dssp CEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHhh
Confidence 7999999999888889999999999999999999999999999876554
No 55
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=97.48 E-value=5e-05 Score=64.02 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=41.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++++++++..
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 76 IIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp EEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred eEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 589999999999999999999999999999999999999999876544
No 56
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=97.48 E-value=6.7e-05 Score=62.19 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=35.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 77 PVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp CEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 689999999888899999999999999999999999999888753
No 57
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=97.47 E-value=0.00015 Score=62.95 Aligned_cols=49 Identities=20% Similarity=0.457 Sum_probs=44.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaG-AdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+.+.+++..| |++||.||++.++|..+++.++++....
T Consensus 78 ~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~~ 127 (151)
T 3kcn_A 78 VYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDLV 127 (151)
T ss_dssp EEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999 9999999999999999999999876543
No 58
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=97.47 E-value=0.00021 Score=62.03 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=44.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaG-AdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.....+++..| |++||.||++.++|..++++++++....
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~~ 130 (154)
T 2rjn_A 81 ERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFLR 130 (154)
T ss_dssp EEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999998 9999999999999999999999876553
No 59
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=97.47 E-value=9.3e-05 Score=62.61 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=43.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 82 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 82 PVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp CEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred CEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999999999999876443
No 60
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=97.47 E-value=9.2e-05 Score=62.51 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=42.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++|+..+.....++++.||++||.||++.++|..+++.++++..
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 77 PILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp CEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred CEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 68999999888888999999999999999999999999999887543
No 61
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=97.42 E-value=6.5e-05 Score=64.91 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=37.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...+++..||++||.||++.++|..+++.++++...
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 126 (141)
T 3cu5_A 79 SVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVLQ 126 (141)
T ss_dssp EEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 589999998888888999999999999999999999999999876543
No 62
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=97.39 E-value=6.6e-05 Score=63.89 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=42.7
Q ss_pred CEEEEcCCCCHHHHH-HHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVM-KGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~Vm-kaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+..... +++..||++||.||++.++|..++++++++....
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~ 131 (140)
T 3grc_A 82 AIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEG 131 (140)
T ss_dssp EEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC--
T ss_pred CEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCC
Confidence 689999988887777 8899999999999999999999999999876543
No 63
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=97.37 E-value=0.00017 Score=69.37 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=43.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+.+.+++++||++||.||+++++|..+++.++++.
T Consensus 110 ~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 110 PIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp CEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred CEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 7999999999999999999999999999999999999999988653
No 64
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=97.37 E-value=0.00016 Score=62.73 Aligned_cols=48 Identities=15% Similarity=0.275 Sum_probs=43.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...+++..||++||.||++.++|..+++++++++..
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~ 128 (153)
T 3cz5_A 81 RILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRA 128 (153)
T ss_dssp CEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCE
T ss_pred eEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCcc
Confidence 689999999999999999999999999999999999999999876443
No 65
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=97.35 E-value=0.00014 Score=66.77 Aligned_cols=48 Identities=29% Similarity=0.363 Sum_probs=44.5
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...+++..||++||.||++.++|..+++.++++...
T Consensus 87 pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 134 (205)
T 1s8n_A 87 PIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFRE 134 (205)
T ss_dssp CEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999886543
No 66
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=97.34 E-value=0.00026 Score=65.16 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=43.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+.+.++++.||++||.||+++++|..+++.+++..
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (215)
T 1a04_A 81 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 126 (215)
T ss_dssp EEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred cEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999999999999998753
No 67
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=97.34 E-value=0.00021 Score=60.60 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=42.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcC-CcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaG-AdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.....+++..| |++||.||++.++|..+++++....
T Consensus 94 ~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 94 IVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp EEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred eEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999 9999999999999999999887643
No 68
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=97.27 E-value=0.00038 Score=64.32 Aligned_cols=46 Identities=30% Similarity=0.378 Sum_probs=43.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+...+++..||++||.||++.++|..+++.++++.
T Consensus 73 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 73 WVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred cEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 6899999999999999999999999999999999999999998763
No 69
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=97.27 E-value=0.00016 Score=66.04 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=44.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..++++++++...
T Consensus 78 ~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 125 (208)
T 1yio_A 78 PIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAE 125 (208)
T ss_dssp CEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhh
Confidence 799999999988999999999999999999999999999999876543
No 70
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=97.25 E-value=0.00042 Score=59.13 Aligned_cols=47 Identities=23% Similarity=0.331 Sum_probs=41.1
Q ss_pred CEEEEcCCCCHHHHHHHHHc-CCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITH-GACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLea-GAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++|+..+.....+++.. ||++||.||++.++|..+++.++++..
T Consensus 74 ~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 74 VRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 58899999888888888876 599999999999999999999887643
No 71
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=97.24 E-value=6.1e-05 Score=64.07 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=44.3
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+.+...++++.||++||.||++.++|..++++++++.+..
T Consensus 83 pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 131 (142)
T 3cg4_A 83 AIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRNQ 131 (142)
T ss_dssp EEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhhc
Confidence 6899999988888889999999999999999999999999999876554
No 72
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=97.23 E-value=0.00037 Score=59.29 Aligned_cols=45 Identities=16% Similarity=0.049 Sum_probs=40.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++++..+.+...++++.||++||.||++.++|..++++....
T Consensus 91 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 91 EVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp EEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred cEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999999998775543
No 73
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=97.22 E-value=0.00027 Score=65.22 Aligned_cols=46 Identities=35% Similarity=0.496 Sum_probs=43.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 76 ~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 121 (225)
T 1kgs_A 76 PVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 121 (225)
T ss_dssp CEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhc
Confidence 7999999999999999999999999999999999999999998764
No 74
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=97.21 E-value=0.00049 Score=71.25 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=44.5
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.+++....
T Consensus 77 pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 124 (459)
T 1w25_A 77 PVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLV 124 (459)
T ss_dssp CEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999999999999999999999999876543
No 75
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.20 E-value=0.00031 Score=72.74 Aligned_cols=46 Identities=26% Similarity=0.481 Sum_probs=43.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
||||+|++.+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 74 pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 74 VVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp EEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999998764
No 76
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=97.17 E-value=0.00028 Score=65.33 Aligned_cols=46 Identities=26% Similarity=0.278 Sum_probs=43.0
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPf-d~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+.+.+++..||++||.||+ +.++|..+++.++++.
T Consensus 70 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 70 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp EEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred cEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999 9999999999988653
No 77
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=97.15 E-value=0.00014 Score=63.02 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=39.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...+++..||++||.||++.++|..++++++++...
T Consensus 80 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 80 AVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp EEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred eEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 589999998888999999999999999999999999999999876544
No 78
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=97.15 E-value=0.00067 Score=57.81 Aligned_cols=47 Identities=17% Similarity=0.296 Sum_probs=39.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+..+ ...++++.||++||.||++.++|..++++++++.+..
T Consensus 85 ~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~ 131 (143)
T 2qv0_A 85 FIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQQ 131 (143)
T ss_dssp EEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHhc
Confidence 4788888744 6778899999999999999999999999998876543
No 79
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.12 E-value=0.00053 Score=71.29 Aligned_cols=48 Identities=27% Similarity=0.524 Sum_probs=44.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+.+.++++.||++||.||++.++|..+++++++.+..
T Consensus 74 pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~l 121 (387)
T 1ny5_A 74 EVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRKL 121 (387)
T ss_dssp EEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999876544
No 80
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=97.10 E-value=0.00028 Score=58.11 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=39.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++ +..+.....++++.||++|+.||++.++|..+++++++.
T Consensus 82 ~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 82 PIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp CEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred CEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 68888 888888889999999999999999999999999988754
No 81
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=97.09 E-value=0.00029 Score=60.26 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=38.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++|+.........+...||++||.||++.++|..+++.+++++.
T Consensus 79 ~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 79 PVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp CEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred CEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 68999998776666666667789999999999999999999886543
No 82
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=97.09 E-value=0.00016 Score=67.62 Aligned_cols=46 Identities=4% Similarity=-0.052 Sum_probs=42.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+......++..||++||.||+++++|..+++.++++.
T Consensus 85 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 130 (225)
T 3klo_A 85 KEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE 130 (225)
T ss_dssp EEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred cEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence 6899999999889999999999999999999999999999998764
No 83
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=97.07 E-value=0.00017 Score=60.29 Aligned_cols=45 Identities=29% Similarity=0.288 Sum_probs=37.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+... .+++..||++||.||++.++|...+++..+..
T Consensus 79 ~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 79 KFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred CEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 5899999988877 88999999999999999999999999887653
No 84
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=97.03 E-value=4.4e-05 Score=62.92 Aligned_cols=46 Identities=22% Similarity=0.392 Sum_probs=41.6
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.+...++++.||++|+.||++.++|..+++++++++
T Consensus 77 ~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 77 PVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 6788999888888889999999999999999999999999988753
No 85
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=97.00 E-value=0.00075 Score=56.58 Aligned_cols=45 Identities=29% Similarity=0.404 Sum_probs=35.4
Q ss_pred EEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 2 FSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 2 VIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
||+++..... .+.++++.||++||.||++.++|..+++++.....
T Consensus 83 ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 83 ILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp EEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 4555555554 88899999999999999999999999998876543
No 86
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=96.99 E-value=0.0012 Score=65.50 Aligned_cols=44 Identities=30% Similarity=0.293 Sum_probs=41.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 44 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLR 44 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++.+++
T Consensus 95 ~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 95 PIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred cEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999988754
No 87
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=96.98 E-value=0.00026 Score=65.65 Aligned_cols=47 Identities=32% Similarity=0.449 Sum_probs=43.5
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 81 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 81 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp CEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 79999999998888999999999999999999999999999988643
No 88
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=96.97 E-value=0.00047 Score=57.67 Aligned_cols=46 Identities=15% Similarity=0.222 Sum_probs=40.0
Q ss_pred CEEEEcCCCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDP-----KLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~-----e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+. +.+.+++..||++||.||++.++|..+++++....
T Consensus 76 ~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 76 SLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 58999998875 67777899999999999999999999999887653
No 89
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=96.91 E-value=0.0004 Score=64.47 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=42.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 77 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 77 PVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp SEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 6999999999999999999999999999999999999999998753
No 90
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=96.87 E-value=0.00078 Score=68.73 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=40.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCC-CHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPf-d~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+.+.++++.||++||.||+ ..++|..++++++++...
T Consensus 79 pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~~l 127 (394)
T 3eq2_A 79 PIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRAYL 127 (394)
T ss_dssp CEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhhhh
Confidence 799999999999999999999999999999 689999999988876443
No 91
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=96.86 E-value=0.00038 Score=65.56 Aligned_cols=45 Identities=31% Similarity=0.465 Sum_probs=41.9
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
|||++|+..+...+.++++.||++||.||+++++|..+++.++++
T Consensus 78 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 78 PIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp CEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 799999999988999999999999999999999999999988764
No 92
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.72 E-value=0.00029 Score=66.13 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=44.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++|+..+.+...++++.||++||.||++.++|..+++.++++...
T Consensus 77 ~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 124 (225)
T 3c3w_A 77 RCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSL 124 (225)
T ss_dssp EEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred cEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCee
Confidence 689999999999999999999999999999999999999999987543
No 93
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=96.72 E-value=0.0004 Score=56.94 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=35.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 43 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VL 43 (607)
|||++|+..+.. .+++..||++||.||++.++|..++++++
T Consensus 75 ~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 75 KIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp CEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred eEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 689999877654 67888999999999999999999988764
No 94
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=96.30 E-value=0.0001 Score=65.88 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=34.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 44 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLR 44 (607)
|||++|++++.... .++|+++||.|||++++|..+++++++
T Consensus 81 pvI~lTa~~~~~~~---~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 81 PFIFATGYGSKGLD---TRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp SSCCBCTTCTTSCC---SSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred CEEEEecCccHHHH---HhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 78999998875443 467999999999999999998877654
No 95
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=96.28 E-value=0.0028 Score=52.84 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=38.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
|||++|+..+.....+++..| +||.||++.++|..+++++++...
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 81 PIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp CEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 689999998888887777665 799999999999999999987643
No 96
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=96.27 E-value=0.00052 Score=55.29 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=35.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 44 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLR 44 (607)
|||+++...+.. +++..||++|+.||++.++|...++++++
T Consensus 77 ~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 77 PLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 688999887765 88999999999999999999988877643
No 97
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=95.81 E-value=0.001 Score=57.08 Aligned_cols=42 Identities=14% Similarity=0.008 Sum_probs=28.4
Q ss_pred CEEEEcC--CCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHH
Q 007341 1 MFSVLSG--NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 42 (607)
Q Consensus 1 PVIMLSA--~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~V 42 (607)
|||++++ ..+.+.+.++++.||++||.||+++++|..+++.+
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~ 132 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEEKTG 132 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------CTT
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHH
Confidence 4677776 56667788999999999999999988777665443
No 98
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=95.81 E-value=0.0022 Score=54.65 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=33.2
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 48 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~ 48 (607)
|||++++........ ..||++||.||++.++|..+++.+++....
T Consensus 89 ~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~ 133 (140)
T 3c97_A 89 SIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGAE 133 (140)
T ss_dssp CCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred EEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCCC
Confidence 477888765543332 689999999999999999999998865443
No 99
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=95.80 E-value=0.015 Score=56.46 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=31.7
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 40 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ 40 (607)
||||+|+..+.+...+++++||++||.||+.. .+...+.
T Consensus 76 pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~-~~~~~~~ 114 (259)
T 3luf_A 76 PVVILTADISEDKREAWLEAGVLDYVMKDSRH-SLQYAVG 114 (259)
T ss_dssp CEEEEECC-CHHHHHHHHHTTCCEEEECSSHH-HHHHHHH
T ss_pred CEEEEEccCCHHHHHHHHHCCCcEEEeCCchh-HHHHHHH
Confidence 79999999999999999999999999999753 3333333
No 100
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=95.66 E-value=0.0069 Score=53.69 Aligned_cols=35 Identities=20% Similarity=0.372 Sum_probs=28.6
Q ss_pred CEEEEcCCCCH--HHHHHHHHcCCcEEEeCCCCHHHH
Q 007341 1 MFSVLSGNGDP--KLVMKGITHGACDYLLKPVRIEEL 35 (607)
Q Consensus 1 PVIMLSA~~s~--e~VmkaLeaGAdDYLvKPfd~EEL 35 (607)
|||++++..+. +.+.++++.||++||.||++.++|
T Consensus 100 ~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 136 (164)
T 3t8y_A 100 RVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISL 136 (164)
T ss_dssp EEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred eEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHH
Confidence 57888886664 367789999999999999995554
No 101
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=95.38 E-value=0.0051 Score=63.46 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=39.2
Q ss_pred CEEEEcCCCCH-----HHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhh
Q 007341 1 MFSVLSGNGDP-----KLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 47 (607)
Q Consensus 1 PVIMLSA~~s~-----e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk 47 (607)
+||++|+.+.. ..+.+++..||++||.||++.++|..++++++++..
T Consensus 79 ~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 79 SVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp EEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred eEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 36666776665 567788999999999999999999999999987643
No 102
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=95.28 E-value=0.0049 Score=69.76 Aligned_cols=46 Identities=4% Similarity=-0.047 Sum_probs=42.5
Q ss_pred CEEEEcCCCC-HHHHHHHHHcCCcEEEeCCCCHHH-HHHHHHHHHHHh
Q 007341 1 MFSVLSGNGD-PKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s-~e~VmkaLeaGAdDYLvKPfd~EE-LkniwQ~VLRrr 46 (607)
||||+|+.++ .+.+..++..||+||+.||++.+| |..+|+.++|+.
T Consensus 87 PIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 87 PVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp CEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 8999999887 788889999999999999999999 889999999875
No 103
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=95.00 E-value=0.02 Score=58.94 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=37.8
Q ss_pred CEEEEcCCCCH--HHHHHHHHcCCcEEEeCCCCH---------HHHHHHHHHHHHHh
Q 007341 1 MFSVLSGNGDP--KLVMKGITHGACDYLLKPVRI---------EELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLSA~~s~--e~VmkaLeaGAdDYLvKPfd~---------EELkniwQ~VLRrr 46 (607)
|||++|+..+. +...++++.||++||.||++. ++|...++++.+.+
T Consensus 78 pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 78 PVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp CEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred cEEEEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 78999998875 458899999999999999984 77777777776543
No 104
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.60 E-value=0.062 Score=43.89 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=43.0
Q ss_pred CceeccHHHHHHHHHHHHHhCCCC---CchHHHHhhcCCCCCCHHHHHHhhhhhhhh
Q 007341 112 PRVVWSVELHRKFVAAVNQLGIDK---AVPKKILDLMNVEKLTRENVASHLQKYRLY 165 (607)
Q Consensus 112 pRlvWT~ELH~kFv~AV~qLG~~k---A~Pk~IlelM~v~gLT~enVaSHLQKyR~~ 165 (607)
.+-.||.|-|++|+++|..+|.+. -.++.|-+.|+- =|..+|+.|-++|-..
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~--Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN--RTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS--SCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 344799999999999999999655 468899999865 4999999998886543
No 105
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=94.08 E-value=0.0045 Score=52.45 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=32.3
Q ss_pred CEEEEc-CCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHh
Q 007341 1 MFSVLS-GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 46 (607)
Q Consensus 1 PVIMLS-A~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrr 46 (607)
|||++| +..+... .+++ |++||.||++.++|..+++++++++
T Consensus 90 ~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 90 SVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp EEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 588898 7766655 5555 9999999999999999998876543
No 106
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=93.79 E-value=0.19 Score=42.14 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=39.7
Q ss_pred CceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 007341 112 PRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKY 162 (607)
Q Consensus 112 pRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKy 162 (607)
.+-.||.|-+++|++||+.+| -.++.|.+.|+-. |.++++.|-++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G---~~W~~IA~~v~~R--T~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK---DDWNKVSEHVGSR--TQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS---SCHHHHHHHHSSC--CHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC---CCHHHHHHHcCCC--CHHHHHHHHHHh
Confidence 345699999999999999999 4699999998754 999999987765
No 107
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=93.62 E-value=0.14 Score=52.76 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=44.4
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhhhh
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 49 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRrrk~~ 49 (607)
|||++|+.+......+++..|+.+|+.||+..+++..++..+++++...
T Consensus 226 pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~~~ 274 (459)
T 1w25_A 226 PVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYT 274 (459)
T ss_dssp CEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998888766543
No 108
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=92.52 E-value=0.092 Score=48.28 Aligned_cols=45 Identities=22% Similarity=0.310 Sum_probs=37.1
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeCC--CCHHHHHHHHHHHHHH
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 45 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvKP--fd~EELkniwQ~VLRr 45 (607)
++++++.....+.+.++++.||++|+.|| ++.+++...+.+++..
T Consensus 55 ~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~ 101 (237)
T 3cwo_X 55 KIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGS 101 (237)
T ss_dssp CEEEECCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHTG
T ss_pred CEEEEECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhCC
Confidence 36777777778899999999999999999 7888888877776643
No 109
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=92.51 E-value=0.28 Score=39.84 Aligned_cols=48 Identities=25% Similarity=0.283 Sum_probs=40.6
Q ss_pred CCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhh
Q 007341 111 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYR 163 (607)
Q Consensus 111 KpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR 163 (607)
..+-.||.|-++.|+++|..+|- .++.|.+.|.- =|..+|+.|-++|-
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~~~~--Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR---RWTKISKLIGS--RTVLQVKSYARQYF 54 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS---CHHHHHHHHSS--SCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc---CHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence 34567999999999999999996 68999998754 59999999877753
No 110
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=91.08 E-value=0.49 Score=38.05 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=42.4
Q ss_pred CCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhh
Q 007341 111 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 167 (607)
Q Consensus 111 KpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lk 167 (607)
..|-.||+|-+++.+++|+..|.. ..+.|.+.+...+=|-.+++. +||.+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEG--NWAAISKNYPFVNRTAVMIKD---RWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCC--chHHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence 345579999999999999999954 399999998877779999887 7776654
No 111
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=90.81 E-value=0.37 Score=48.29 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=46.6
Q ss_pred CCCCCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhh
Q 007341 107 TTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYL 166 (607)
Q Consensus 107 s~~kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~L 166 (607)
....+..-.||+|-++.|++|+..+|-+ +..|.++++-. |..+|+.|-.+||..+
T Consensus 127 e~~~k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~VgTK--T~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 127 EVIQKCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIGNK--SVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHHHSSC--CHHHHHHHHHHTTTTT
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHcCCC--CHHHHHHHHHHHHHHh
Confidence 3444667789999999999999999954 99999997665 9999999999988654
No 112
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=90.22 E-value=0.38 Score=52.63 Aligned_cols=52 Identities=23% Similarity=0.330 Sum_probs=46.6
Q ss_pred CCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhh
Q 007341 111 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 167 (607)
Q Consensus 111 KpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lk 167 (607)
+...+||+|-|..|+++|...|-+ ++.|-+.++.. |..+|++|.++||..+.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkd---w~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRD---FQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTC---HHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 456899999999999999999954 99999999887 99999999999988654
No 113
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=89.86 E-value=0.74 Score=36.14 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=39.1
Q ss_pred CCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 007341 111 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKY 162 (607)
Q Consensus 111 KpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKy 162 (607)
..+-.||+|-+++++++|..+|.. ..+.|.+.|+- =|..+++.|-++|
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~~~--Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFG--NWQDVANQMCT--KTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTT--CHHHHHHHHTT--SCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcC--cHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 345569999999999999999953 48999999954 5999999976553
No 114
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=87.61 E-value=0.55 Score=40.24 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=36.2
Q ss_pred CceeccHHHHHHHHHHHHHhCC-CCCchHHHHh---hc-CC-------------CCCCHHHHHHhhhhhhhhhhc
Q 007341 112 PRVVWSVELHRKFVAAVNQLGI-DKAVPKKILD---LM-NV-------------EKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 112 pRlvWT~ELH~kFv~AV~qLG~-~kA~Pk~Ile---lM-~v-------------~gLT~enVaSHLQKyR~~Lkr 168 (607)
..-+|.++|.+.|++|+..+-. ...+ .|+- .| +- .-=|+.+|.||||.-|....+
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred cCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 3458999999999999999752 2222 2221 11 10 123999999999987765443
No 115
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=86.80 E-value=1.6 Score=36.23 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=37.3
Q ss_pred ceeccHHHHHHHHHHHHHhCCCC-CchHHHHhhcCCCCCCHHHHHHhhhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQK 161 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~k-A~Pk~IlelM~v~gLT~enVaSHLQK 161 (607)
+-.||.|-++.|++||..+|.+. -.+.+|.+.|+ |=|.++|+.|-+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp--GRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP--SKSKEDCIARYKL 65 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS--SSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC--CCCHHHHHHHHHH
Confidence 34599999999999999998541 23678888875 6699999997655
No 116
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=86.22 E-value=2.2 Score=34.21 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=44.7
Q ss_pred CCCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhc
Q 007341 109 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 109 ~kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr 168 (607)
.+++|-.||+|-++..+++|+.+|.. .++.|.+.|+..+=|-.+++. +|+.+|+.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~---Rw~~~l~p 60 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKD---RWRTMKKL 60 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHHH---HHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHHH---HHHHHcCC
Confidence 45677789999999999999999943 589999999744668899988 67767653
No 117
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=86.06 E-value=1.3 Score=34.65 Aligned_cols=45 Identities=22% Similarity=0.345 Sum_probs=38.1
Q ss_pred eeccHHHHHHHHHHHHHhCCCCCchHHHHhhcC-CCCCCHHHHHHhhhhh
Q 007341 114 VVWSVELHRKFVAAVNQLGIDKAVPKKILDLMN-VEKLTRENVASHLQKY 162 (607)
Q Consensus 114 lvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~-v~gLT~enVaSHLQKy 162 (607)
-.||+|-+++++++|+..|.. ..+.|.+.|+ -. |..+++.|-++|
T Consensus 10 ~~WT~eED~~L~~~v~~~G~~--~W~~IA~~~~~~R--t~~qcr~r~~~~ 55 (58)
T 2elk_A 10 ENWGADEELLLIDACETLGLG--NWADIADYVGNAR--TKEECRDHYLKT 55 (58)
T ss_dssp CCCCHHHHHHHHHHHHHTTTT--CHHHHHHHHCSSC--CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcC--CHHHHHHHHCCCC--CHHHHHHHHHHH
Confidence 359999999999999999953 4899999997 44 999999887665
No 118
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=85.66 E-value=1.6 Score=36.05 Aligned_cols=47 Identities=11% Similarity=0.116 Sum_probs=37.9
Q ss_pred ceeccHHHHHHHHHHHHHhCCC-CCchHHHHhhcCCCCCCHHHHHHhhhhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGID-KAVPKKILDLMNVEKLTRENVASHLQKY 162 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~-kA~Pk~IlelM~v~gLT~enVaSHLQKy 162 (607)
+-.||.|-++.|.+||..++.+ .-.+.+|.+.|+ =|.++|+.|-++.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg---Rt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG---RSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT---SCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 3469999999999999999844 244788999984 5999999976653
No 119
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=79.52 E-value=3.8 Score=36.28 Aligned_cols=56 Identities=20% Similarity=0.212 Sum_probs=46.6
Q ss_pred CCCCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCC--CCCCHHHHHHhhhhhhhhhhc
Q 007341 108 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNV--EKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 108 ~~kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v--~gLT~enVaSHLQKyR~~Lkr 168 (607)
..+++|-.||+|-.+..+++|+.+|.. .++.|++.+.. ++=|.-+++. |||..+++
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g--~W~~I~~~~~~~f~~RT~v~lKd---rWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTG--RWRDVKLCAFEDADHRTYVDLKD---KWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSS--SHHHHHSSSSSSTTCCCHHHHHH---HHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCC--ChHHHHHHhccccCCCCHHHHHH---HHHHHHhh
Confidence 456778889999999999999999964 48999997642 6679999998 89988876
No 120
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=79.41 E-value=5.2 Score=30.37 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=40.0
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 167 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lk 167 (607)
|-.||+|-++..+++|...|.. ..+.|.+.|+..+=|..+++. +|+.+++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~---Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKD---RWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHH---HHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCCCHHHHHH---HHHHHHc
Confidence 3469999999999999999943 589999999744568888887 5666554
No 121
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=78.78 E-value=4.8 Score=36.22 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=36.6
Q ss_pred EEEEcCCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 2 FSVLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 2 VIMLSA~~s~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
+|++-..=+++.+.+.+..||- ||+.|+.+..|..+|+.-+|.
T Consensus 76 liVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 76 VLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 3455555667889999999999 999999999999999988875
No 122
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=78.56 E-value=5.5 Score=32.46 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=45.3
Q ss_pred CCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCC-CCCCHHHHHHhhhhhhhhhhchhh
Q 007341 110 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNV-EKLTRENVASHLQKYRLYLKRISC 171 (607)
Q Consensus 110 kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v-~gLT~enVaSHLQKyR~~Lkr~s~ 171 (607)
.+.|-.||+|-.+..++.|+.+|. .++.|+.--.. ++=|.-+|+. |||...|+..|
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~---~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~~~ 61 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN---HWNSILWSFPFQKGRRAVDLAH---KYHRLISGPSS 61 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS---CHHHHHHHSCCCTTCCHHHHHH---HHHHHHTCSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH---hHHHHHHhCCCccCcccchHHH---HHHHHHhcccC
Confidence 346777999999999999999995 69999964333 5569999998 99998887654
No 123
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=78.45 E-value=6 Score=30.65 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=39.5
Q ss_pred CCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhh
Q 007341 110 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 167 (607)
Q Consensus 110 kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lk 167 (607)
...+-.||+|-+++++++|.++|.. ....|.+.|. +=|..+++.| |+.+|+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~~--~Rt~~qcr~R---w~~~l~ 55 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQ--DWKFLASHFP--NRTDQQCQYR---WLRVLS 55 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTT--CHHHHHHHCS--SSCHHHHHHH---HHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHcc--CCCHHHHHHH---HHHHcC
Confidence 4456689999999999999999942 4899999985 4588888884 444443
No 124
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.02 E-value=7.4 Score=30.64 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=34.4
Q ss_pred CCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHh
Q 007341 111 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASH 158 (607)
Q Consensus 111 KpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSH 158 (607)
+..-.||+|-|+.|++++...|- ....|.+.|. +=|..+|..|
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk---~w~~Ia~~l~--~rt~~~~v~~ 52 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPK---NFGLIASYLE--RKSVPDCVLY 52 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTT---CHHHHHHHCT--TSCHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCC---CHHHHHHHcC--CCCHHHHHHH
Confidence 45567999999999999999982 4788887765 4588888764
No 125
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=73.24 E-value=6.1 Score=34.15 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=39.6
Q ss_pred eccHHHHHHHHHHHHHhCCCC-CchHHHHhhcCCCCCCHHHHHHhhhhhhhh
Q 007341 115 VWSVELHRKFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQKYRLY 165 (607)
Q Consensus 115 vWT~ELH~kFv~AV~qLG~~k-A~Pk~IlelM~v~gLT~enVaSHLQKyR~~ 165 (607)
.||.|-++.|++|+..+|.+. -.+.+|.+.++ |=|.++|+.|-+++...
T Consensus 10 ~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp--GRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEILVED 59 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 599999999999999998552 34789999885 56999999986664433
No 126
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=71.30 E-value=9 Score=28.71 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=36.1
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQ 160 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQ 160 (607)
+-.||+|-+++++++|..+|. ...+.|.+.|+ +=|..+++.|-.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~--~~W~~Ia~~~~--~Rt~~qcr~Rw~ 46 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT--DDWKVIANYLP--NRTDVQCQHRWQ 46 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS--SCHHHHHHTST--TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC--CCHHHHHHHcC--CCCHHHHHHHHH
Confidence 456999999999999999995 35899999985 458899888543
No 127
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=68.35 E-value=15 Score=33.31 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=45.5
Q ss_pred CCCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcC--CCCCCHHHHHHhhhhhhhhhhc
Q 007341 109 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMN--VEKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 109 ~kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~--v~gLT~enVaSHLQKyR~~Lkr 168 (607)
.+++|-.||.|-.+..+++|+.+|.. .++.|++.+. .++=|--+++. |||..+++
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g--~W~~I~~~~~~~~~~RT~vdlKd---RWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTG--RWRDVKFRAFENVHHRTYVDLKD---KWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSS--CHHHHHHHHHSSSCCCCHHHHHH---HHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCC--ChHHHHHHhccccCCCCHHHHHH---HHHHHHhh
Confidence 45677889999999999999999964 4899998753 35669999997 89988865
No 128
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=66.16 E-value=11 Score=34.06 Aligned_cols=56 Identities=20% Similarity=0.216 Sum_probs=46.5
Q ss_pred CCCCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCC--CCCCHHHHHHhhhhhhhhhhc
Q 007341 108 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNV--EKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 108 ~~kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v--~gLT~enVaSHLQKyR~~Lkr 168 (607)
..+++|-.||+|-.+..+++|+.+|.. .++.|++.+.. ++=|--+++. |||..+++
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G--~W~~Ia~~~~~~f~~RT~v~lKd---RWrnllk~ 69 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTG--RWRDVKMRAFDNADHRTYVDLKD---KWKTLVHT 69 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGG--CHHHHHHHHCSCCSSCCSHHHHH---HHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHhccccCCCCHHHHHH---HHHHHHhh
Confidence 456778899999999999999999953 48999998753 5669999998 88888864
No 129
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=66.16 E-value=10 Score=32.01 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=41.0
Q ss_pred eccHHHHHHHHHHHHHhCCCCCchHHHHhhcC--CCCCCHHHHHHhhhhhhhhhhc
Q 007341 115 VWSVELHRKFVAAVNQLGIDKAVPKKILDLMN--VEKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 115 vWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~--v~gLT~enVaSHLQKyR~~Lkr 168 (607)
.||+|-++..+++|+.+|.. ..+.|++... .++=|-.+++. |||..+++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g--~W~~I~~~~~~~~~~RT~~~lKd---rWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTG--RWRDVKMRAFDNADHRTYVDLKD---KWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSS--CHHHHHHHHCTTCTTSCHHHHHH---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC--CcHHHHHhhccccCCCCHHHHHH---HHHHHHHh
Confidence 49999999999999999964 4889998632 35669999998 89988875
No 130
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.07 E-value=16 Score=29.04 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=33.5
Q ss_pred CCCCceeccHHHHHHHHHHHHHhCCCCCchHHHHh-hcCCCCCCHHHHHHh
Q 007341 109 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILD-LMNVEKLTRENVASH 158 (607)
Q Consensus 109 ~kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~Ile-lM~v~gLT~enVaSH 158 (607)
+...+..||+|-|+.|.+|+...|-+ -..|.+ ++.. =|..+|..+
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~v~~--Kt~~~~v~f 50 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKN---FFRIRKELLPN--KETGELITF 50 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSC---HHHHHHHSCTT--SCHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCcc---HHHHHHHHcCC--CcHHHHHHH
Confidence 34455689999999999999999854 567776 4444 477777653
No 131
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=63.13 E-value=16 Score=27.29 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=35.8
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 161 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQK 161 (607)
+-.||+|-+++++++|.+.|. .....|.+.|+ +=|..+++.|-..
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~--~~W~~Ia~~~~--~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP--KRWSVIAKHLK--GRIGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT--TCHHHHHTTST--TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc--ChHHHHHHHcC--CCCHHHHHHHHHH
Confidence 446999999999999999994 24889999885 4588888885433
No 132
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.55 E-value=23 Score=28.13 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=39.8
Q ss_pred CCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhh
Q 007341 110 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 167 (607)
Q Consensus 110 kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lk 167 (607)
...+-.||+|-+++++++|..+|. ...+.|.+.|+ +=|..+++. .|+.+|+
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~--~~W~~Ia~~l~--~Rt~~qcr~---Rw~~~L~ 56 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGK--NQWSRIASLLH--RKSAKQCKA---RWYEWLD 56 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCS--SCHHHHHHHST--TCCHHHHHH---HHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc--CCHHHHHHHhc--CCCHHHHHH---HHHHHcC
Confidence 445667999999999999999994 24899999987 458888887 4444543
No 133
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.43 E-value=15 Score=28.90 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=36.3
Q ss_pred CceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhh
Q 007341 112 PRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 161 (607)
Q Consensus 112 pRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQK 161 (607)
.+-.||.|-+++++++|..+|- .+..|.++++ =|..+++.|-+.
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~---~W~~Ia~~~g---Rt~~qcr~Rw~~ 51 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT---QWRTIAPIIG---RTAAQCLEHYEF 51 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT---CHHHHHHHHS---SCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---CHHHHhcccC---cCHHHHHHHHHH
Confidence 3456999999999999999985 6899999665 599999996444
No 134
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=60.74 E-value=17 Score=30.79 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=38.5
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhc
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr 168 (607)
+-.||+|-++.++++|.++|. ....|.+.| +|=|..+|+. +|+..++|
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~---~W~~Ia~~l--~gRt~~~~k~---rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN---RWAEIAKLL--PGRTDNAIKN---HWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS---CHHHHHTTC--TTCCHHHHHH---HHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCC---CHHHHHHHc--CCCCHHHHHH---HHHHHHhc
Confidence 346999999999999999994 488999876 5669999999 45556554
No 135
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=57.48 E-value=15 Score=32.33 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=38.7
Q ss_pred eeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhc
Q 007341 114 VVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 114 lvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr 168 (607)
-.||+|-++.++++|.++|- ....|.+.| +|=|..+|+. .|+..++|
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~---~W~~Ia~~l--~gRt~~~~k~---r~~~~~~~ 126 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGN---RWAEIAKLL--PGRTDNAVKN---HWNSTMRR 126 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCS---CHHHHGGGS--TTCCHHHHHH---HHHTTTTC
T ss_pred ccCCHHHHHHHHHHHHHHCc---CHHHHHHHC--CCCCHHHHHH---HHHHHHhc
Confidence 45999999999999999994 488999987 5669999999 45555554
No 136
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=56.41 E-value=20 Score=29.82 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=34.8
Q ss_pred eccHHHHHHHHHHHHHhCCCC-CchHHHHhhcCCCCCCHHHHHHhhhh
Q 007341 115 VWSVELHRKFVAAVNQLGIDK-AVPKKILDLMNVEKLTRENVASHLQK 161 (607)
Q Consensus 115 vWT~ELH~kFv~AV~qLG~~k-A~Pk~IlelM~v~gLT~enVaSHLQK 161 (607)
.||.+-+++|.+|+..++.+. -.+.+|.+.++- =|.++|..|-+.
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g--KT~eE~~~hY~~ 55 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS--RSPEECQRKYME 55 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT--SCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 499999999999999987442 236688877654 599999986554
No 137
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=55.76 E-value=17 Score=32.10 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=39.4
Q ss_pred eccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhch
Q 007341 115 VWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRI 169 (607)
Q Consensus 115 vWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr~ 169 (607)
.||.|-+++++++|.++|. ....|.+.|. |=|..+++. +|+..++++
T Consensus 64 ~WT~eEd~~L~~~v~~~G~---~W~~Ia~~l~--gRt~~~~k~---rw~~l~~k~ 110 (126)
T 3osg_A 64 PWTAEEDALLVQKIQEYGR---QWAIIAKFFP--GRTDIHIKN---RWVTISNKL 110 (126)
T ss_dssp CCCHHHHHHHHHHHHHHCS---CHHHHHTTST--TCCHHHHHH---HHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHCc---CHHHHHHHcC--CCCHHHHHH---HHHHHHHhc
Confidence 5999999999999999994 4899998774 669999998 567677764
No 138
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=55.71 E-value=17 Score=31.25 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=38.4
Q ss_pred eeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhc
Q 007341 114 VVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 114 lvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr 168 (607)
-.||+|-++.++++|..+|- ....|.+.| +|=|..+|+.| |+..+++
T Consensus 54 ~~WT~eEd~~L~~~~~~~G~---~W~~Ia~~l--~gRt~~~~k~r---w~~l~r~ 100 (107)
T 2k9n_A 54 DPWSPEEDMLLDQKYAEYGP---KWNKISKFL--KNRSDNNIRNR---WMMIARH 100 (107)
T ss_dssp CCCCHHHHHHHHHHHHHTCS---CHHHHHHHH--SSSCHHHHHHH---HHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCc---CHHHHHHHC--CCCCHHHHHHH---HHHHHhh
Confidence 46999999999999999995 488999987 56699999994 5545554
No 139
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=52.96 E-value=25 Score=29.08 Aligned_cols=41 Identities=15% Similarity=-0.008 Sum_probs=34.9
Q ss_pred CceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHh
Q 007341 112 PRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASH 158 (607)
Q Consensus 112 pRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSH 158 (607)
.+-.||+|-++..+++|.++|-. ++.|.+.| |=|..+|+.+
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~k---W~~IA~~l---gRt~~q~knR 62 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGND---WATIGAAL---GRSASSVKDR 62 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSSC---HHHHHHHH---TSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC---HHHHHHHh---CCCHHHHHHH
Confidence 34469999999999999999953 99999999 5589999883
No 140
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=51.38 E-value=29 Score=30.61 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=36.9
Q ss_pred CCCceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhh
Q 007341 110 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHL 159 (607)
Q Consensus 110 kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHL 159 (607)
...+-.||+|-+++.+++|...|. ..+.|.+.|+-. |..+++.+-
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~---~W~~Ia~~~~~R--t~~qcr~Rw 52 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS---DWKMIAATFPNR--NARQCRDRW 52 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT---CHHHHHHTCTTC--CHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CHHHHHHHcCCC--CHHHHHHHH
Confidence 445667999999999999999996 599999988644 888887743
No 141
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=51.21 E-value=4.5 Score=34.29 Aligned_cols=50 Identities=16% Similarity=0.067 Sum_probs=39.4
Q ss_pred CceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhch
Q 007341 112 PRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRI 169 (607)
Q Consensus 112 pRlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr~ 169 (607)
.+-.||.|-++.|+++|..+|- .+..|.+.|+ +=|..+|+.|-.. ++++.
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~---~W~~IA~~l~--gRt~~q~k~r~~~---~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR---NWSAIARMVG--SKTVSQCKNFYFN---YKKRQ 64 (89)
Confidence 3456999999999999999995 3888988875 5599999997554 55553
No 142
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=42.77 E-value=56 Score=26.44 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=33.6
Q ss_pred CCCceeccHHHHHHHHHHHHHhCCCCCchHHHHh-hcCCCCCCHHHHHHhh
Q 007341 110 KKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILD-LMNVEKLTRENVASHL 159 (607)
Q Consensus 110 kKpRlvWT~ELH~kFv~AV~qLG~~kA~Pk~Ile-lM~v~gLT~enVaSHL 159 (607)
++..-.||+|-++.|.+|+...|-+ -..|.+ .+. .=|..+|..+-
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~v~--~Kt~~~~v~fY 50 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGKD---FNDIRQDFLP--WKSLTSIIEYY 50 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCSC---HHHHHHTTCS--SSCHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHcC--CCCHHHHHHHH
Confidence 3455679999999999999999954 567776 344 44777777643
No 143
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=42.68 E-value=33 Score=30.36 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=38.1
Q ss_pred eccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhc
Q 007341 115 VWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 115 vWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr 168 (607)
.||+|-++.++++|..+|. ....|.+.|+ |=|..+|+. +|+.+|++
T Consensus 56 ~Wt~eEd~~L~~~~~~~G~---~W~~Ia~~l~--gRt~~~~k~---rw~~~l~~ 101 (131)
T 3zqc_A 56 AWTPEEDETIFRNYLKLGS---KWSVIAKLIP--GRTDNAIKN---RWNSSISK 101 (131)
T ss_dssp CCCHHHHHHHHHHHHHSCS---CHHHHTTTST--TCCHHHHHH---HHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHHCc---CHHHHHHHcC--CCCHHHHHH---HHHHHHHH
Confidence 5999999999999999994 4889998875 569999998 46666655
No 144
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=42.03 E-value=46 Score=28.11 Aligned_cols=45 Identities=11% Similarity=0.177 Sum_probs=36.1
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 161 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQK 161 (607)
+-.||+|-+++++++|+..|.. ..+.|.+.|+ +=|..+++.|-..
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~--~W~~Ia~~l~--~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPK--RWSVIAKHLK--GRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTT--CHHHHHTTST--TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC--cHHHHhhhhc--CCCHHHHHHHHHh
Confidence 3469999999999999999953 4889999884 5589998875433
No 145
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=38.72 E-value=50 Score=30.00 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=38.6
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhhhc
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 168 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~Lkr 168 (607)
+-.||+|-++.++++|.++|. ....|.+.| ||=|..+|+.| |+..++|
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~---~W~~Ia~~l--~gRt~~~~knr---~~~~~r~ 157 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGN---RWAEIAKLL--PGRTDNAIKNH---WNSTMRR 157 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS---CHHHHHTTS--TTCCHHHHHHH---HHTTTCC
T ss_pred ccCCChHHHHHHHHHHHHHCC---CHHHHHHHC--CCCCHHHHHHH---HHHHHhc
Confidence 456999999999999999994 488999876 56799999994 4445543
No 146
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=37.56 E-value=13 Score=31.36 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=34.1
Q ss_pred eeccHHHHHHHHHHHHHhCCC-CCchHHHHhhcCCCCCCHHHHHHhhhh
Q 007341 114 VVWSVELHRKFVAAVNQLGID-KAVPKKILDLMNVEKLTRENVASHLQK 161 (607)
Q Consensus 114 lvWT~ELH~kFv~AV~qLG~~-kA~Pk~IlelM~v~gLT~enVaSHLQK 161 (607)
-.||.+-.+.|..|+.....+ .-.+.+|.+.++ |=|.++|+.|-|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp--GKT~eEVk~hY~~ 67 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK--GRTPEEVKKHYEL 67 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC--SSCHHHHHGGGC-
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC--CCCHHHHHHHHHH
Confidence 359999999999999997633 223567776665 5699999998664
No 147
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=34.73 E-value=77 Score=27.74 Aligned_cols=44 Identities=11% Similarity=0.197 Sum_probs=35.7
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQ 160 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQ 160 (607)
+-.||+|-+++++++|+..|.. ..+.|.+.|+ +=|..+++.|-.
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~--~W~~Ia~~l~--~Rt~~qcr~Rw~ 70 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPK--RWSDIAKHLK--GRIGKQCRERWH 70 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSC--CHHHHHHHSS--SCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCC--CHHHHHHHhc--CCcHHHHHHHHH
Confidence 4569999999999999999953 4889999985 558888887443
No 148
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=29.71 E-value=74 Score=32.99 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=29.7
Q ss_pred HHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHH
Q 007341 11 PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 45 (607)
Q Consensus 11 ~e~VmkaLeaGAdDYLvKPfd~EELkniwQ~VLRr 45 (607)
.+.+++++++|..-++.||+..+|...+++.+-++
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 57788999999999999999999988877766443
No 149
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=29.70 E-value=48 Score=29.99 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=25.8
Q ss_pred CEEEEcCCCCHHHHHHHHHcCCcEEEeC
Q 007341 1 MFSVLSGNGDPKLVMKGITHGACDYLLK 28 (607)
Q Consensus 1 PVIMLSA~~s~e~VmkaLeaGAdDYLvK 28 (607)
|||.+++....+...++++.||+++++-
T Consensus 176 Pvia~~g~~~~~~~~~~~~~G~~~~~vg 203 (237)
T 3cwo_X 176 PIIASGGAGKMEHFLEAFLAGADAALAA 203 (237)
T ss_dssp CEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred CEEecCCCCCHHHHHHHHHcCcHHHhhh
Confidence 7999999999999999999999999873
No 150
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=26.80 E-value=1.1e+02 Score=26.07 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=36.1
Q ss_pred eeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhhhhhhhhh
Q 007341 114 VVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYL 166 (607)
Q Consensus 114 lvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHLQKyR~~L 166 (607)
-.||+|-+++++++|...|.. ..+.|.+.|+ +=|..++.. .|+.+|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~--~W~~Ia~~~~--~Rt~~qcr~---Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAK--DWIRISQLMI--TRNPRQCRE---RWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSS--CHHHHHHHTT--TSCHHHHHH---HHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCC--CHHHHhhhcC--CCCHHHHHH---HHHHHH
Confidence 369999999999999999942 4889999986 448888876 444444
No 151
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=24.44 E-value=1.4e+02 Score=27.01 Aligned_cols=43 Identities=12% Similarity=0.170 Sum_probs=35.2
Q ss_pred ceeccHHHHHHHHHHHHHhCCCCCchHHHHhhcCCCCCCHHHHHHhh
Q 007341 113 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHL 159 (607)
Q Consensus 113 RlvWT~ELH~kFv~AV~qLG~~kA~Pk~IlelM~v~gLT~enVaSHL 159 (607)
+-.||+|-++.++++|..+|.. ....|.+.|+ +=|..+++.+-
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~~--~W~~Ia~~l~--~Rt~~qcr~Rw 100 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGPK--RWSVIAKHLK--GRIGKQCRERW 100 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSC--CHHHHHHTST--TCCHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHhCcc--cHHHHHHHcC--CCCHHHHHHHH
Confidence 4569999999999999999952 3789999884 55889988743
No 152
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=22.64 E-value=90 Score=25.49 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=26.2
Q ss_pred HHHhhcCCCCCCHHHHHHhhhhhhhhhhchh
Q 007341 140 KILDLMNVEKLTRENVASHLQKYRLYLKRIS 170 (607)
Q Consensus 140 ~IlelM~v~gLT~enVaSHLQKyR~~Lkr~s 170 (607)
.|.+....+.++.++||.++...+.+|.|+-
T Consensus 10 ~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~f 40 (103)
T 3lsg_A 10 IIEESYTDSQFTLSVLSEKLDLSSGYLSIMF 40 (103)
T ss_dssp HHHHHTTCTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 6777777778999999999999998887663
Done!