BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007342
(607 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1
Length = 809
Score = 362 bits (929), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 195/426 (45%), Positives = 258/426 (60%), Gaps = 30/426 (7%)
Query: 1 MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDL-DISQDSILQNAD 59
+L PE+TE V DA VPV+ FSG+ IDL+YA+L+L IPE+L D+ +S L+N D
Sbjct: 169 ILKVHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNID 228
Query: 60 EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVA 119
E+++ SLNGCRVTDQIL+LVP I NFR LRC++ WA RRG+YSN+ GFLGG++WALL A
Sbjct: 229 EKSILSLNGCRVTDQILKLVPNIPNFRMALRCIKLWAIRRGIYSNILGFLGGVSWALLTA 288
Query: 120 RICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGS-LGLQVWDPRRNPKDKYHLM 178
RICQLYPN+ PS ++ RFF+VY W+WP P+LLC I+EG LG +VW+P+R DK HLM
Sbjct: 289 RICQLYPNSAPSTIIHRFFKVYEIWKWPAPILLCHIQEGGILGPKVWNPKR---DKAHLM 345
Query: 179 PIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 238
PIITPAYP MNS+YNVS STL++M EF RG EI +E E W L E FF Y
Sbjct: 346 PIITPAYPSMNSTYNVSKSTLQLMKSEFVRGAEITRKIETGEC--TWKNLLEKCDFFTRY 403
Query: 239 KNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDK----SK 294
Y+ ID + N +D R W+GW+ES+LR L +E T M P+P F++ +
Sbjct: 404 SFYIEIDCYSMNEEDSRKWEGWIESKLRFLISNLE-STPKMKFAVPYPKGFTNNLHKANN 462
Query: 295 P--LYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLRKPG---MQISVAHVT 349
P + S+FMGL G + D+ V EF + + +P M I V ++
Sbjct: 463 PDQICTSFFMGLSFNFSNTPGADKSVDLTKAVTEFTGIIKDWLRTQPNPDTMDIKVQYIK 522
Query: 350 RRNLPNFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRN 409
++ LP FV G P P K T +K SS +P A ++K +N D L +
Sbjct: 523 KKQLPAFVKDEG--PEEPVKTT--------KKRSSTGEPSA---TRKKLKSENSDNKLNS 569
Query: 410 AKCHAT 415
K T
Sbjct: 570 PKSPIT 575
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1
Length = 739
Score = 328 bits (842), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 161/359 (44%), Positives = 233/359 (64%), Gaps = 13/359 (3%)
Query: 8 VTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLN 67
+ L V DA VPV+KF+F G+ IDL++ARL++ I ++LD+ DS L++ D + +RSLN
Sbjct: 142 IRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLN 201
Query: 68 GCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPN 127
GCRVTD+IL LVP + FR TLR ++ WAKRRG+YSN+ GFLGG++WA+LVAR CQLYPN
Sbjct: 202 GCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPN 261
Query: 128 AVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPC 187
A S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP
Sbjct: 262 AAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQ 321
Query: 188 MNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDIS 247
NS+YNVSTST +M++EF++G + + + + ++ DW L EP FF+ Y++Y+ + S
Sbjct: 322 QNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHYIVLTAS 379
Query: 248 AENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDF-----SDKSKPLYCSYFM 302
A ++ W G VES++R L +ER+ + L H +P F K+ +F+
Sbjct: 380 ASTEENHLEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFPGNKEHHKANNYVSMWFL 438
Query: 303 GLQRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNLPNFV 357
G+ ++ V E D+ ++ F V + + K GM+I HV ++ L +++
Sbjct: 439 GIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKKQLHHYL 496
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2
Length = 736
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 161/359 (44%), Positives = 232/359 (64%), Gaps = 13/359 (3%)
Query: 8 VTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLN 67
+ L V DA VPV+KF+F G+ IDL++ARL++ I ++LD+ DS L++ D + +RSLN
Sbjct: 142 IRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLN 201
Query: 68 GCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPN 127
GCRVTD+IL LVP + FR TLR ++ WAKRRG+YSN+ GFLGG++WA+LVAR CQLYPN
Sbjct: 202 GCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPN 261
Query: 128 AVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPC 187
A S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP
Sbjct: 262 AAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQ 321
Query: 188 MNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDIS 247
NS+YNVSTST +M++EF++G + + + + ++ DW L EP FF+ Y++Y+ + S
Sbjct: 322 QNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKS--DWSKLLEPPNFFQKYRHYIVLTAS 379
Query: 248 AENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDF-----SDKSKPLYCSYFM 302
A ++ W G VES++R L +ER+ + L H +P F K +F+
Sbjct: 380 ASTEENHLEWVGLVESKIRVLVGNLERNEFITL-AHVNPQSFPGNKEHHKDNNYVSMWFL 438
Query: 303 GLQRKQGVPVGEGEQFDIRLTVKEFKQAV----SMYTLRKPGMQISVAHVTRRNLPNFV 357
G+ ++ V E D+ ++ F V + + K GM+I HV ++ L +++
Sbjct: 439 GIIFRR-VENAESVNIDLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYL 496
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4
Length = 745
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/365 (46%), Positives = 230/365 (63%), Gaps = 17/365 (4%)
Query: 7 EVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSL 66
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSL
Sbjct: 142 EVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSL 201
Query: 67 NGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP 126
NGCRVTD+IL LVP I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQLYP
Sbjct: 202 NGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYP 261
Query: 127 NAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP 186
NA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP
Sbjct: 262 NAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYP 321
Query: 187 CMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDI 246
NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y+ +
Sbjct: 322 QQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLA 379
Query: 247 SAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCSYF 301
SA W G VES++R L +E++ + L Q P P + DK + +
Sbjct: 380 SAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTMWV 438
Query: 302 MGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLR----KPGMQISVAHVTRRN----L 353
+GL K+ E D+ ++ F V + + M+I+ HV R+ L
Sbjct: 439 IGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLL 497
Query: 354 PNFVF 358
PN V
Sbjct: 498 PNHVL 502
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4
Length = 739
Score = 313 bits (802), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/359 (46%), Positives = 232/359 (64%), Gaps = 19/359 (5%)
Query: 7 EVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSL 66
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSL
Sbjct: 142 EVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSL 201
Query: 67 NGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP 126
NGCRVTD+IL LVP I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQLYP
Sbjct: 202 NGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYP 261
Query: 127 NAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP 186
NA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP
Sbjct: 262 NAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYP 321
Query: 187 CMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDI 246
NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y+ +
Sbjct: 322 QQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLA 379
Query: 247 SAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCSYF 301
SA W G VES++R L +E++ + L Q P P + D+ + +
Sbjct: 380 SAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKESPDREE-FRTMWV 438
Query: 302 MGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVS--MYTLRKPGMQISVAHVTRRNL 353
+GL K+ E D+ ++ F +QA++ M+ L M+I+ HV R+ L
Sbjct: 439 IGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEL---DMKIAAMHVKRKQL 493
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1
Length = 636
Score = 313 bits (801), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 192/474 (40%), Positives = 275/474 (58%), Gaps = 57/474 (12%)
Query: 7 EVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSL 66
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSL
Sbjct: 142 EVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSL 201
Query: 67 NGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP 126
NGCRVTD+IL LVP I NFR TLR ++ WAK +YSN+ GFLGG++WA+LVAR CQLYP
Sbjct: 202 NGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYP 261
Query: 127 NAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP 186
NAV S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP
Sbjct: 262 NAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYP 321
Query: 187 CMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDI 246
NS+YNVS ST +M++EF++G I + ++A +W LFE +FF+ YK+Y+ +
Sbjct: 322 QQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKA--EWSKLFEAPSFFQKYKHYIVLLA 379
Query: 247 SAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDF-SDKSKP----LYCSYF 301
SA W G VES++R L +E++ + L H +P F + K P +
Sbjct: 380 SASTEKQHLEWVGLVESKIRILVGSLEKNEFITL-AHVNPQSFPAPKENPDMEEFRTMWV 438
Query: 302 MGLQRKQ---GVPVGEGEQFDIR-LTVKEFKQAVS--MYTLRKPGMQISVAHVTRRNLPN 355
+GL K+ + +DI+ T ++QAV+ M+ + GM+I+ H+ R+ L
Sbjct: 439 IGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEM---GMKITAMHLRRKEL-- 493
Query: 356 FVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHAT 415
+ L V K + +GR+ TD N + +A C +
Sbjct: 494 -------------------HQLLPHHVLQDKKAHSTEGRRL--TDLNDSSFDLSAGCENS 532
Query: 416 M--PSSSGEFREG----------SPIMSTISSSSINLQ-----FEHMDANELAG 452
M PSS+ + G SP ++ +++S N+Q + ++ NE +G
Sbjct: 533 MSVPSSTSTMKTGPLISSSQGRNSPALAVMTASVANIQATEFSLQQVNTNESSG 586
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3
Length = 739
Score = 312 bits (800), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 168/359 (46%), Positives = 232/359 (64%), Gaps = 19/359 (5%)
Query: 7 EVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSL 66
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSL
Sbjct: 142 EVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSL 201
Query: 67 NGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP 126
NGCRVTD+IL LVP I NFR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR CQLYP
Sbjct: 202 NGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYP 261
Query: 127 NAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP 186
NA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP
Sbjct: 262 NAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPIITPAYP 321
Query: 187 CMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDI 246
NS+YNVS ST +M++EF++G I + + ++A +W LFE FF+ YK+Y+ +
Sbjct: 322 QQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKHYIVLLA 379
Query: 247 SAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCSYF 301
SA W G VES++R L +E++ + L Q P P + DK + +
Sbjct: 380 SAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKENPDKEE-FRTMWV 438
Query: 302 MGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVS--MYTLRKPGMQISVAHVTRRNL 353
+GL K+ E D+ ++ F +QA++ M+ + M+I+ HV R+ L
Sbjct: 439 IGLVFKK-TENSENLSVDLTYDIQSFTDTVYRQAINSKMFEV---DMKIAAMHVKRKQL 493
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a
PE=2 SV=1
Length = 715
Score = 310 bits (793), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 168/374 (44%), Positives = 233/374 (62%), Gaps = 14/374 (3%)
Query: 2 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 61
L + EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 119 LKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 178
Query: 62 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 121
+RSLNGCRVTD+IL LVP I +FR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR
Sbjct: 179 CIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 238
Query: 122 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 181
CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 239 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 298
Query: 182 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNY 241
TPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF+ YK+Y
Sbjct: 299 TPAYPQQNSTYNVSVSTRAVMIEEFKQGLAITDEILLGKA--EWSKLFDAPNFFQKYKHY 356
Query: 242 LRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYF 301
+ + SA W G VES++R L +E++ + L H +P F S+ + F
Sbjct: 357 ILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITL-AHVNPRSFPAPSENMEKEEF 415
Query: 302 -----MGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTLR----KPGMQISVAHVTRRN 352
+GL K+ + E D+ ++ F V + + M+I+ HV R+
Sbjct: 416 RTMWVIGLVFKK-MENSENLSVDLTYDIQSFTDTVDRQAINSKMFETEMKIAAMHVKRKQ 474
Query: 353 LPNFVFPGGVRPSR 366
L P V P +
Sbjct: 475 LHQLQ-PSHVSPKK 487
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2
Length = 641
Score = 309 bits (792), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 188/473 (39%), Positives = 278/473 (58%), Gaps = 55/473 (11%)
Query: 7 EVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSL 66
EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D + +RSL
Sbjct: 142 EVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSL 201
Query: 67 NGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYP 126
NGCRVTD+IL LVP I +FR TLR ++ WAK +YSN+ GFLGG++WA+LVAR CQLYP
Sbjct: 202 NGCRVTDEILHLVPNIDSFRLTLRAIKLWAKCHNIYSNILGFLGGVSWAMLVARTCQLYP 261
Query: 127 NAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYP 186
NA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPIITPAYP
Sbjct: 262 NAIASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVWDPRVNPSDRYHLMPIITPAYP 321
Query: 187 CMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYLRIDI 246
NS+YNVS ST +M++EF++G I + N+A +W LFE +FF+ YK+Y+ +
Sbjct: 322 QQNSTYNVSVSTRMVMIEEFKQGLAITHEILLNKA--EWSKLFEAPSFFQKYKHYIVLLA 379
Query: 247 SAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFSDKSKPLYCSYF 301
SA W G VES++R L +E++ + L Q P P + +DK + +
Sbjct: 380 SAPTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPAPKETADKEE-FRTMWV 438
Query: 302 MGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVS--MYTLRKPGMQISVAHVTRRNLP 354
+GL K+ E D+ ++ F +QA++ M+ + M+I+ H+ R+ L
Sbjct: 439 IGLVLKKP-ENSEILSIDLTYDIQSFTDTVYRQAINSKMFEM---DMKIAAMHLRRKEL- 493
Query: 355 NFVFPGGVRPSRPSKGTWDSRRALERKVSSHTKPGADDGRKRKQTDDNVDTHLRNAKCHA 414
+ + P V L++K + T + R TD ++ + +++
Sbjct: 494 HQLLPNHV---------------LQKKETHLT----ESVRLTAVTDSSLLLSI-DSENSM 533
Query: 415 TMPSSSGEFREG----------SPIMSTISSSSINLQF-----EHMDANELAG 452
T PS +G + G SP ++ +++S N+QF +H++ E +G
Sbjct: 534 TAPSPTGTMKTGPLTGNPQGRNSPALAVMAASVTNIQFPDVSLQHVNPIESSG 586
>sp|O42617|PAP_CANAL Poly(A) polymerase PAPalpha OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PAPALPHA PE=3 SV=1
Length = 558
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 138/292 (47%), Positives = 206/292 (70%), Gaps = 4/292 (1%)
Query: 1 MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADE 60
++ + PE+ E+ VPDA+VP++K +F G+SIDL+ ARL++ +P DL + ++L+N DE
Sbjct: 122 IIRKRPELEEIACVPDAYVPIIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLDE 181
Query: 61 QTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 120
+ +RSLNG RVTD+IL+LVPK F+ LRC++ WA++R VY N+ GF GG+ WA+LVAR
Sbjct: 182 KDLRSLNGTRVTDEILQLVPKPTVFKHALRCIKLWAQQRAVYGNIFGFPGGVAWAMLVAR 241
Query: 121 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPI 180
ICQLYPNAV S +V +FF +YT+W WP PVLL +IE+G L ++VW+PR P D+ H MP+
Sbjct: 242 ICQLYPNAVSSAIVEKFFNIYTKWNWPEPVLLKSIEDGPLQVRVWNPRLYPHDRLHRMPV 301
Query: 181 ITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKN 240
ITPAYP M +++N+++ST ++++ E RG I + + + W LFE +FF YK
Sbjct: 302 ITPAYPSMCATHNITSSTQKVILAELSRGSSIMQEIHAGKK--TWSDLFEKHSFFYKYKF 359
Query: 241 YL-RIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSD 291
YL + S ++A++ + W G++ES+LRQL LK+E + HP+ DFS+
Sbjct: 360 YLCVVAASIDSAEEHKKWSGFIESKLRQLVLKLEV-AEGVEIAHPYVKDFSN 410
>sp|Q10295|PAP_SCHPO Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=pla1 PE=2 SV=1
Length = 566
Score = 301 bits (770), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 137/273 (50%), Positives = 194/273 (71%), Gaps = 2/273 (0%)
Query: 1 MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADE 60
ML E EVT+L VPDA+VP++KFKF G+SIDL++ARLS+ +P DL++S +++L+ +E
Sbjct: 122 MLREREEVTDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEE 181
Query: 61 QTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 120
+ V SLNG RVTDQIL+LVP F+ LR ++FWA+RR +Y+NV GF GG+ WA++VAR
Sbjct: 182 RCVLSLNGTRVTDQILQLVPNRAVFKHALRAIKFWAQRRAIYANVVGFPGGVAWAMMVAR 241
Query: 121 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPI 180
ICQLYPNAV S++V++FFR+ QW WP P+LL IE+G L +++W+P+ P DK H MPI
Sbjct: 242 ICQLYPNAVSSVIVAKFFRILHQWNWPQPILLKPIEDGPLQVRIWNPKLYPSDKAHRMPI 301
Query: 181 ITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKN 240
ITPAYP M +++N++ ST I++ E R EI + + + W LF+ FF YK+
Sbjct: 302 ITPAYPSMCATHNITLSTQTIILREMVRAGEIADQIMVKA--LPWSALFQKHDFFHRYKH 359
Query: 241 YLRIDISAENADDLRNWKGWVESRLRQLTLKIE 273
YL I +A+ A+ W G VES+LR L ++E
Sbjct: 360 YLTITAAAKTAEAQLKWAGLVESKLRHLVTRLE 392
>sp|Q9UW26|PAPA_CANAL Poly(A) polymerase PAPa OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=PAPA PE=3 SV=1
Length = 555
Score = 282 bits (722), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 137/300 (45%), Positives = 200/300 (66%), Gaps = 9/300 (3%)
Query: 1 MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADE 60
+L E+ E+ PVPDA VP++K +F+G+SIDL++ARL + +P DL + ++L+N DE
Sbjct: 122 LLKGRSELEEIAPVPDAFVPIIKIEFAGISIDLIFARLDIPRVPRDLTLDDKNLLKNIDE 181
Query: 61 QTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 120
+ +R+LNG RVTD+IL+LVPK F+ LRC++ WA++R VY N+ GF GG+ WA+LVAR
Sbjct: 182 KDLRALNGTRVTDEILQLVPKPTVFKHALRCIKMWAQQRAVYGNIFGFPGGVAWAMLVAR 241
Query: 121 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPI 180
ICQLYPNAV +++V +FF +Y+QW WP PVLL IE+G L ++VW+PR D+ H MP+
Sbjct: 242 ICQLYPNAVSAVIVEKFFHIYSQWAWPQPVLLKQIEDGPLQVRVWNPRLYALDRQHRMPV 301
Query: 181 ITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKN 240
ITPAYP M +++N+++ST ++++ EFQRG E+ + N W L E FF YK
Sbjct: 302 ITPAYPSMCATHNITSSTQKVILSEFQRGIELMNDI--NVGKKSWSDLLERHDFFFRYKF 359
Query: 241 YLRIDISAEN--ADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYC 298
YL I + + A+ L+ + G VES+LR L K+E + HP+ F + YC
Sbjct: 360 YLCIVAATRSTYAEHLK-YSGMVESKLRLLVQKLEL-VEGIELAHPYVKSFENG---YYC 414
>sp|P29468|PAP_YEAST Poly(A) polymerase OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=PAP1 PE=1 SV=1
Length = 568
Score = 278 bits (711), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 130/274 (47%), Positives = 188/274 (68%), Gaps = 3/274 (1%)
Query: 1 MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADE 60
+L E E+ E+ PVPDA VP++K KFSG+SIDL+ ARL +P L +S ++L+N DE
Sbjct: 123 LLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDE 182
Query: 61 QTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVAR 120
+ +R+LNG RVTD+IL LVPK FR LR ++ WA+RR VY+N+ GF GG+ WA+LVAR
Sbjct: 183 KDLRALNGTRVTDEILELVPKPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVAR 242
Query: 121 ICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPI 180
ICQLYPNA +++++RFF + ++W WP PV+L IE+G L ++VW+P+ +D+ H MP+
Sbjct: 243 ICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPLQVRVWNPKIYAQDRSHRMPV 302
Query: 181 ITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKN 240
ITPAYP M +++N++ ST ++++ EF RG +I + N+ W LFE FF YK
Sbjct: 303 ITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKF 360
Query: 241 YLRIDISAENADDLR-NWKGWVESRLRQLTLKIE 273
YL I +D+ W G VES++R L +K+E
Sbjct: 361 YLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLE 394
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1
Length = 400
Score = 275 bits (703), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 135/238 (56%), Positives = 176/238 (73%), Gaps = 2/238 (0%)
Query: 2 LTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQ 61
L + EV +L V +A VPV+K F G+ ID+L+ARL+L IPEDLD+ DS+L+N D +
Sbjct: 134 LKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIR 193
Query: 62 TVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARI 121
+RSLNGCRVTD+IL LVP I +FR TLR ++ WAKR +YSN+ GFLGG++WA+LVAR
Sbjct: 194 CIRSLNGCRVTDEILHLVPNIDSFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVART 253
Query: 122 CQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPII 181
CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+YHLMPII
Sbjct: 254 CQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRYHLMPII 313
Query: 182 TPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYK 239
TPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF+ YK
Sbjct: 314 TPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLLKA--EWSKLFDAPNFFQKYK 369
>sp|P51005|PAPO2_XENLA Poly(A) polymerase alpha-B OS=Xenopus laevis GN=papola-b PE=2 SV=1
Length = 484
Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 152/261 (58%), Gaps = 16/261 (6%)
Query: 116 LLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKY 175
+LVAR CQLYPNA+ S LV +FF V+++W WPNPVLL EE +L L VWDPR NP D+Y
Sbjct: 1 MLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSDRY 60
Query: 176 HLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFF 235
HLMPIITPAYP NS+YNVS ST +M++EF++G I + + +A +W LF+ FF
Sbjct: 61 HLMPIITPAYPQQNSTYNVSVSTRAVMVEEFKQGLAITDEILLVKA--EWSKLFDAPNFF 118
Query: 236 EAYKNYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNML-----QCHPHPGDFS 290
+ YK+Y+ + SA W G VES++R L +E++ + L Q P P + S
Sbjct: 119 QKYKHYILLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFPSPSENS 178
Query: 291 DKSKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEF-----KQAVSMYTLRKPGMQISV 345
+K + + +GL K+ + E D+ ++ F +QA++ ++I+
Sbjct: 179 EKEE-FRTMWVIGLVFKK-MENSENLSVDLTYDIQSFTDTVYRQAINSKMFET-EIKIAA 235
Query: 346 AHVTRRNLPNFVFPGGVRPSR 366
HV R+ L + + P V P +
Sbjct: 236 MHVKRKQL-HQLLPSHVLPKK 255
>sp|Q51D88|PAP_ENTHI Poly(A) polymerase OS=Entamoeba histolytica GN=16.t00038 PE=2 SV=1
Length = 522
Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 157/310 (50%), Gaps = 17/310 (5%)
Query: 6 PEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRS 65
P+V EL +P P + + + DL ++R + +P++LDI ++IL+N DE R+
Sbjct: 104 PDVKELKQIPSKRSPHLSMIYLNIEFDLNFSRTAYTSLPDNLDILNENILKNMDELDTRA 163
Query: 66 LNGCRVTDQILRLVPKI--QNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQ 123
+NG R TD I VP + FR +R ++ W K+RG+Y V FL GI+ +LVA++
Sbjct: 164 INGVRNTDIIDAFVPNHSEEAFRVMVRTIKLWTKKRGIYGYVYCFLNGISIEILVAQVIS 223
Query: 124 LYPNAVPSMLVSRFFRVYTQWRW-PNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIIT 182
L+ +FF+VY+ W W PV+L ++ N K K ++ I+T
Sbjct: 224 ENYQLDNVRLLEKFFQVYSSWDWLRTPVMLGTNDDF-----------NDKKKEGVIQILT 272
Query: 183 PAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKNYL 242
PA P N++++++ +L ++ E +RG EI +E DW LF+P F Y ++
Sbjct: 273 PASPSENAAFSITKFSLEMIKRELKRGQEIVHEF-SSEGVNDWAKLFKPRHLFCGYYIFI 331
Query: 243 RIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKSKPLYCSYFM 302
+++ + + L G ES L L +K +++ + P F D+ Y Y++
Sbjct: 332 EFIVTSSSLEGLTTTIGKFESGLVNL-MKGLSEIEEIIEANVIPNGFLDEENEKYF-YYV 389
Query: 303 GLQRKQGVPV 312
G+ K+ PV
Sbjct: 390 GMNVKRDCPV 399
>sp|Q8DUW2|AROB_STRMU 3-dehydroquinate synthase OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=aroB PE=3 SV=1
Length = 355
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 34 LYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQIL 76
L A + LW I +DLD S DSIL+NA++ S C V QI+
Sbjct: 190 LIADVELWEILKDLDGSTDSILENAEKIIYHS---CNVKRQIV 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 229,651,745
Number of Sequences: 539616
Number of extensions: 9867899
Number of successful extensions: 23872
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 23453
Number of HSP's gapped (non-prelim): 151
length of query: 607
length of database: 191,569,459
effective HSP length: 123
effective length of query: 484
effective length of database: 125,196,691
effective search space: 60595198444
effective search space used: 60595198444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)