Query 007342
Match_columns 607
No_of_seqs 173 out of 402
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 23:22:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q79_A Poly(A) polymerase alph 100.0 3.4E-96 1E-100 800.1 33.7 365 1-368 136-508 (514)
2 2hhp_A Poly(A) polymerase; tem 100.0 2.4E-91 8.4E-96 764.2 34.4 358 1-364 123-528 (530)
3 4fh3_A Poly(A) RNA polymerase 100.0 3.3E-32 1.1E-36 280.3 15.8 194 7-231 100-348 (349)
4 2ikf_A RNA uridylyl transferas 100.0 5.9E-31 2E-35 274.0 8.6 181 3-213 126-348 (353)
5 3nyb_A Poly(A) RNA polymerase 100.0 1.1E-29 3.9E-34 262.1 11.5 181 2-215 103-298 (323)
6 4e8f_A Poly(A) RNA polymerase 100.0 3.8E-29 1.3E-33 265.8 15.3 198 8-238 129-383 (405)
7 2b4v_A RNA editing complex pro 99.9 2.1E-23 7.2E-28 225.7 2.7 154 61-217 249-441 (468)
8 3hj4_A Minor editosome-associa 99.8 1.6E-18 5.5E-23 183.5 16.8 192 8-232 104-380 (384)
9 3pq1_A Poly(A) RNA polymerase; 99.8 8.3E-18 2.9E-22 181.9 17.3 150 5-215 244-437 (464)
10 1r89_A TRNA nucleotidyltransfe 97.0 0.011 3.8E-07 63.9 15.6 214 14-283 92-319 (437)
11 1px5_A 2'-5'-oligoadenylate sy 96.0 0.18 6.1E-06 52.1 16.4 109 82-206 201-323 (349)
12 4at7_B NF90, interleukin enhan 24.1 5.2E+02 0.018 27.6 11.4 119 60-213 203-327 (383)
No 1
>1q79_A Poly(A) polymerase alpha; mRNA processing, nucleotidyl transferase, transferase; HET: 3AT; 2.15A {Bos taurus} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1q78_A* 1f5a_A*
Probab=100.00 E-value=3.4e-96 Score=800.13 Aligned_cols=365 Identities=44% Similarity=0.796 Sum_probs=335.2
Q ss_pred CCCCCCCccceeecCCCccceEEEEECceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhCC
Q 007342 1 MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 80 (607)
Q Consensus 1 mL~~~p~Vtel~~V~dA~VPIIKf~~~GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lVP 80 (607)
+|++.++|+++++|++|+||||||++.||+|||+||+++...+|+++++.++++|+++|++|++||||+|++|+|+++||
T Consensus 136 ~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~~p~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp 215 (514)
T 1q79_A 136 KLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRAIRSLNGCRVTDEILHLVP 215 (514)
T ss_dssp HHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSSBCTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHhcCccCceEEEecCCcccEEEEEECCeeEEEEEecCCcccCcccccCCchhhhcccchhhhhhhhhHHHHHHHHHHcc
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHhhccCCCCCceeccccccCCC
Q 007342 81 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSL 160 (607)
Q Consensus 81 n~~~FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQLyPnas~s~Ll~~FF~vYS~W~Wp~PV~L~~i~~g~l 160 (607)
+.+.||.++|+||+|||+||||+|.+||||||+||||||++||+|||+++++||.+||++|++|+|++||+|+.+++|.+
T Consensus 216 ~~~~fr~llr~IK~Wak~Rgi~~~~~G~lgg~s~~lLVa~~~Ql~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~~~l 295 (514)
T 1q79_A 216 NIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNL 295 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCBCTTTTSBCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHSCCTTSCBCSSCCCCCSS
T ss_pred CcHHHHHHHHHHHHHHHHcCCCccccCCccHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCeEecccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCcccceeecCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhccc
Q 007342 161 GLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKN 240 (607)
Q Consensus 161 g~~vWdP~~~~~Dr~hlMPIITPayP~~NST~NVT~STl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~LFep~~FF~~Yk~ 240 (607)
++++|||+.+++|++|+|||+||+||++|+|+|||++|+++|++||+||+++++++..++. +|++||+|++||++|+|
T Consensus 296 ~~~~w~p~~~~~dr~~~m~IidP~~P~~N~~~nVs~st~~~I~~Ef~rA~~il~~i~~~~~--~w~~Lf~~~~ff~~y~~ 373 (514)
T 1q79_A 296 NLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKA--EWSKLFEAPNFFQKYKH 373 (514)
T ss_dssp CCCCCCTTTCGGGGGCSSCBBCSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSE
T ss_pred CCcccCCccCCcCcccceeEeCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHhCCcchhhhcce
Confidence 9999999999999999999999999999999999999999999999999999999998887 99999999999999999
Q ss_pred EEEEEEEecChhhhcchhhhhHHHHHHHHHHHhhccCcceeeccCCCCCCCCC-----CCcEEEEEEeeeecc---CCCC
Q 007342 241 YLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDKS-----KPLYCSYFMGLQRKQ---GVPV 312 (607)
Q Consensus 241 yL~I~vsa~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~F~~~~-----~~~~~~ffIGL~~~~---~~~~ 312 (607)
||+|++++.+++++.+|.||||||||.|+.+||+.. .+..|||||++|.+.. ..|+++|||||+++. ....
T Consensus 374 yl~v~~~a~~~~~~~~w~G~veSr~r~Lv~~le~~~-~i~~a~~~P~~f~~~~~~~~~~~~~~~~~iGL~~~~~~~~~~~ 452 (514)
T 1q79_A 374 YIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNE-FITLAHVNPQSFPAPKENPDKEEFRTMWVIGLVFKKTENSENL 452 (514)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHTTHHHHHHHHHTST-TEEEEEECSCCEECCCSCTTSCCEEEEEEEEEEEC--------
T ss_pred EEEEEEEECCHHHhhhheehhhhhHHHHHHHhccCC-CceeeecCccccCCccccccCCceeEEEEEEEeeccccccccc
Confidence 999999999999999999999999999999999864 4556999999997653 358899999999865 2222
Q ss_pred CCCceechHHHHHHHHHHHHhhccCCCCcEEEEEEecCCCCCCCcCCCCCCCCCCC
Q 007342 313 GEGEQFDIRLTVKEFKQAVSMYTLRKPGMQISVAHVTRRNLPNFVFPGGVRPSRPS 368 (607)
Q Consensus 313 ~~~~~~DL~~~v~eF~~~V~~~~~~~~~m~I~Vs~Vkr~~LP~~Vf~~~~r~~~~~ 368 (607)
..+.++||+.++++|++.|++|..|+++|+|+|+|||+++||++||++|.|++++.
T Consensus 453 ~~~~~~di~~~~~~F~~~~~~~~~~~~~~~i~v~~vk~~~Lp~~v~~~~~~~~~~~ 508 (514)
T 1q79_A 453 SVDLTYDIQSFTDTVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKKKKH 508 (514)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTCCCTTCEEEEEEEEHHHHGGGCC----------
T ss_pred CcccccchHHHHHHHHHHHhhccccCCCcEEEEEEechHHCchhhcchhccCCCCC
Confidence 34567999999999999999999999999999999999999999999998887653
No 2
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A*
Probab=100.00 E-value=2.4e-91 Score=764.25 Aligned_cols=358 Identities=41% Similarity=0.768 Sum_probs=335.2
Q ss_pred CCCCCCCccceeecCCCccceEEEEECceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhCC
Q 007342 1 MLTEMPEVTELHPVPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 80 (607)
Q Consensus 1 mL~~~p~Vtel~~V~dA~VPIIKf~~~GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lVP 80 (607)
+|++.++|+++++|++|+||||||++.||+|||+||+++..++|+++++.++++|+++|++|+|||||+|++|+|+++||
T Consensus 123 ~L~~~~~v~~v~~I~~A~VPIIK~~~~gi~vDL~f~~~~~~~ip~~l~l~~~~~L~~ld~~~~~slng~r~~d~I~~~vp 202 (530)
T 2hhp_A 123 LLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRVTDEILELVP 202 (530)
T ss_dssp HHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSSSCBCTTCCSCCGGGGTTCCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhcCCCCceEEEecCCcccEEEEEECCEeeEEEEeccccccCCcccCCCchhhhhccchhhhhccchHHHHHHHHHHcc
Confidence 36678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHhhccCCCCCceeccccccCCC
Q 007342 81 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSL 160 (607)
Q Consensus 81 n~~~FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQLyPnas~s~Ll~~FF~vYS~W~Wp~PV~L~~i~~g~l 160 (607)
+.+.||.++|+||+|||+||||+|.+||||||+|+||||++||+|||+++++||.+||++|++|+|++||+|+.+++|.+
T Consensus 203 ~~~~fr~ll~~IK~Wak~Rgl~~~~~G~lgg~~~~~LVa~~lQl~P~~s~~~LL~~FF~~y~~~dw~~pV~l~~~~~g~~ 282 (530)
T 2hhp_A 203 KPNVFRIALRAIKLWAQRRAVYANIFGFPGGVAWAMLVARICQLYPNACSAVILNRFFIILSEWNWPQPVILKPIEDGPL 282 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHCCTTSCEESSCCCCCSS
T ss_pred CcHHHHHHHHHHHHHHHHcCCCcccccCCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCceEecccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCcccceeecCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhccc
Q 007342 161 GLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAYKN 240 (607)
Q Consensus 161 g~~vWdP~~~~~Dr~hlMPIITPayP~~NST~NVT~STl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~LFep~~FF~~Yk~ 240 (607)
++++|+|+.|.+|+.|+|||+||+||++|+|+|||++|+++|++||+||+++++++..++. +|++||+|++||.+|+|
T Consensus 283 ~~~~w~p~~~~~d~~~~m~Ii~P~~P~~N~a~nVs~st~~~I~~Ef~rA~~ll~~i~~~~~--~w~~Lf~~~~ff~~y~~ 360 (530)
T 2hhp_A 283 QVRVWNPKIYAQDRSHRMPVITPAYPSMCATHNITESTKKVILQEFVRGVQITNDIFSNKK--SWANLFEKNDFFFRYKF 360 (530)
T ss_dssp CSCCCCTTTCHHHHTCSSCEECSSSSCCBTTTTCCHHHHHHHHHHHHHHHHHHHHHHTTSS--CHHHHTCCCCHHHHCSE
T ss_pred cccccCcccCCCCCccceeEECCCCCCCccCccCCHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHcCCCChHHhcCe
Confidence 9999999988888999999999999999999999999999999999999999999988777 99999999999999999
Q ss_pred EEEEEEEec-ChhhhcchhhhhHHHHHHHHHHHhhccCcceeeccCCCCCCCC---------------------------
Q 007342 241 YLRIDISAE-NADDLRNWKGWVESRLRQLTLKIERHTYNMLQCHPHPGDFSDK--------------------------- 292 (607)
Q Consensus 241 yL~I~vsa~-~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ahp~P~~F~~~--------------------------- 292 (607)
||+|++++. +++++.+|.||||||+|.|+.+||+. +++..|||||+.|.+.
T Consensus 361 ~l~i~~~~~g~~~~~~~w~G~veSr~r~Lv~~Le~~-~~i~~a~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (530)
T 2hhp_A 361 YLEITAYTRGSDEQHLKWSGLVESKVRLLVMKLEVL-AGIKIAHPFTKPFESSYCCPTEDDYEMIQDKYGSHKTETALNA 439 (530)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTS-TTEEEEEECSSCEEEEEECCSSSHHHHHHHHCSCHHHHTTCCS
T ss_pred EEEEEEEecCCHHHHhhhcchHHHHHHHHHHHhhcc-cCceeeecCCcccCccccccchhhhhhhhcccccccccccccc
Confidence 999999997 99999999999999999999999994 5677899999998421
Q ss_pred -----------------CCCcEEEEEEeeeeccCCCCCCCceechHHHHHHHHHHHHhhcc-CCCC-cE-EEEEEecCCC
Q 007342 293 -----------------SKPLYCSYFMGLQRKQGVPVGEGEQFDIRLTVKEFKQAVSMYTL-RKPG-MQ-ISVAHVTRRN 352 (607)
Q Consensus 293 -----------------~~~~~~~ffIGL~~~~~~~~~~~~~~DL~~~v~eF~~~V~~~~~-~~~~-m~-I~Vs~Vkr~~ 352 (607)
...|+++|||||+++.. ..++++||+.++++|++.|++|.. |+++ |+ |.|+|||+++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~igl~~~~~---~~~~~~di~~~~~~F~~~~~~~~~~~~~~~~~~~~v~~v~~~~ 516 (530)
T 2hhp_A 440 LKLVTDENKEEESIKDAPKAYLSTMYIGLDFNIE---NKKEKVDIHIPCTEFVNLCRSFNEDYGDHKVFNLALRFVKGYD 516 (530)
T ss_dssp CC---------------CEEEEEEEEEEEEEC-------CCCCCCHHHHHHHHHHHHHTSTTTTCSSSEEEEEEEEEGGG
T ss_pred ccccccccccccccccccceeeEEEEEEEeecCC---CCCceEeChhHHHHHHHHHHhhhhhcccCCcceEEEEEechhh
Confidence 12367899999998743 235689999999999999999999 8887 78 9999999999
Q ss_pred CCCCcCCCCCCC
Q 007342 353 LPNFVFPGGVRP 364 (607)
Q Consensus 353 LP~~Vf~~~~r~ 364 (607)
||+|||++|+++
T Consensus 517 lp~~v~~~~~~~ 528 (530)
T 2hhp_A 517 LPDEVFDENEKR 528 (530)
T ss_dssp CCGGGSCTTSCC
T ss_pred CCHhhccCCCcC
Confidence 999999977643
No 3
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A*
Probab=99.98 E-value=3.3e-32 Score=280.32 Aligned_cols=194 Identities=20% Similarity=0.264 Sum_probs=154.6
Q ss_pred CccceeecCCCccceEEEEEC-------ceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhC
Q 007342 7 EVTELHPVPDAHVPVMKFKFS-------GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLV 79 (607)
Q Consensus 7 ~Vtel~~V~dA~VPIIKf~~~-------GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lV 79 (607)
+..+++.|++|+||||||..+ |+.||++|. +.+|+|.++.|..++
T Consensus 100 ~~~~~~~i~~ArVPiik~~~~~~~~~~~~~~~Dis~~----------------------------~~~g~~~t~ll~~~~ 151 (349)
T 4fh3_A 100 EGFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFN----------------------------NRLAIHNTLLLSSYT 151 (349)
T ss_dssp TTEEEEEEEETTEEEEEEEEESSSSSCTTCCEEEEES----------------------------CHHHHHHHHHHHHHH
T ss_pred hcccceEeeeeeeeeEEEEecccccccccceeecCcC----------------------------cchHHHHHHHHHHHh
Confidence 345778899999999999984 688888764 357999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhh------CCC--------------------------
Q 007342 80 PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQL------YPN-------------------------- 127 (607)
Q Consensus 80 Pn~~~FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQL------yPn-------------------------- 127 (607)
+....||.++++||+|||+||||++..|+|||++|++||+++||. +|+
T Consensus 152 ~~~~~~r~l~~~iK~wak~~~l~~~~~G~lssy~l~lmvi~fLQ~~~~pp~lP~l~~~~~~~~~~~~~~~~~f~~~~~~~ 231 (349)
T 4fh3_A 152 KLDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDI 231 (349)
T ss_dssp HHCTTHHHHHHHHHHHHHHTTCCCGGGTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGS
T ss_pred hcCHHHHHHHHHHHHHHHHcCCCCcCCCCCChHHHHHHHHHHHHhccCCCcCchhhhccccccccccCcccccccchhhc
Confidence 999999999999999999999999999999999999999999984 333
Q ss_pred ------CChHHHHHHHHHhhc-cCCCCCceeccccccCCC---------CCcccCCCCCCCCCcccceeecCCCCCCCcc
Q 007342 128 ------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSL---------GLQVWDPRRNPKDKYHLMPIITPAYPCMNSS 191 (607)
Q Consensus 128 ------as~s~Ll~~FF~vYS-~W~Wp~PV~L~~i~~g~l---------g~~vWdP~~~~~Dr~hlMPIITPayP~~NST 191 (607)
.+.+.||..||++|+ .|+|+++|+......+.+ ....|++..+..+..+.|+|++|++|.+|+|
T Consensus 232 ~~~~n~~slg~LL~~FF~~Y~~~Fd~~~~vIsi~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~~l~IeDPf~~~~Nva 311 (349)
T 4fh3_A 232 PPSQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVG 311 (349)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHTCCTTTBCBCSSSTTCCCBHHHHTCC---------------CCSSCBBCSSSTTCBGG
T ss_pred ccccCcccHHHHHHHHHHHhhhccCCCCceEEecCCCCccchHHhcccccccccCcccccCCCCceEEEECCCCCCCcCC
Confidence 357899999999998 799999987543322211 1223444444445568999999999999999
Q ss_pred cccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCC
Q 007342 192 YNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEP 231 (607)
Q Consensus 192 ~NVT~STl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~LFep 231 (607)
++|+..++..|++||+||++++++.. .+.+|++|||.
T Consensus 312 r~Vs~~~~~~I~~eF~~A~~~L~~~~---~~~~~~~lfe~ 348 (349)
T 4fh3_A 312 RTVSSSGLYRIRGEFMAASRLLNSRS---YPIPYDSLFEE 348 (349)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHCCS---SSCCGGGGGSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcc---cCCCHHHHhhc
Confidence 99999999999999999999987422 23489999985
No 4
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A*
Probab=99.96 E-value=5.9e-31 Score=273.99 Aligned_cols=181 Identities=17% Similarity=0.217 Sum_probs=153.3
Q ss_pred CCCCCccceeecCCCccceEEEEE-CceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhCCC
Q 007342 3 TEMPEVTELHPVPDAHVPVMKFKF-SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPK 81 (607)
Q Consensus 3 ~~~p~Vtel~~V~dA~VPIIKf~~-~GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lVPn 81 (607)
++.+.+.++++|.+|+||||||+. .||+|||+|.. .+|++.++.|..++..
T Consensus 126 ~~~~~~~~v~~i~~ArVPIiK~~~~~~i~~Dis~~n----------------------------~~g~~~t~ll~~~~~~ 177 (353)
T 2ikf_A 126 RQKHLSWNVEEVRRTRVPVVRVKGGGAVDFDITAYR----------------------------RNGVRNSALLRAYFEQ 177 (353)
T ss_dssp HHHCTTSEEEEECSSSSCEEEEECSSSCEEEEEESC----------------------------CHHHHHHHHHHHHHHH
T ss_pred HhcCCCCceEEecccceeEEEEEcCCCcEEEEEecC----------------------------ccHHHHHHHHHHHHHh
Confidence 344567899999999999999999 68999999864 4699999999999988
Q ss_pred hhhHHHHHHHHHHHHHhhcCccCcc-ccchhHHHHHHHHHHHhh------CC------------------------CCCh
Q 007342 82 IQNFRTTLRCMRFWAKRRGVYSNVA-GFLGGINWALLVARICQL------YP------------------------NAVP 130 (607)
Q Consensus 82 ~~~FR~aLR~IKlWAKrRGIYSNv~-GfLGGIsWAILVArVCQL------yP------------------------nas~ 130 (607)
...||.++++||+|||+||||++.. |+|||++|++||+++||. +| +.+.
T Consensus 178 ~p~~r~l~~~iK~wa~~r~l~~~~~gG~lssy~l~lmvi~~LQ~~~~~P~lp~l~~~~~~~~~~~~~~~~~~~~~~~~sl 257 (353)
T 2ikf_A 178 NPPCRWLSMSIKRWSKQTGLNASVIGGSITSYGFNLMVVYYLLQRNHLQFVPPSTIDVSRVEPLPPHLPLEEPADEGLEL 257 (353)
T ss_dssp STTHHHHHHHHHHHHHHTTCBTTSTTCCBCHHHHHHHHHHHHHHTTSSCCCCGGGCCGGGSCSSCCCCCCCCCTTTTHHH
T ss_pred CccHHHHHHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhcCCCCCcCccccChhhccCCCcCCccccCCCCcccH
Confidence 8999999999999999999999999 999999999999999984 23 2356
Q ss_pred HHHHHHHHHhhc-cCCCCCceeccccccCCC---CCcccCCC------CCCCCCcccceeecCCCCCCCcccccChhhHH
Q 007342 131 SMLVSRFFRVYT-QWRWPNPVLLCAIEEGSL---GLQVWDPR------RNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 200 (607)
Q Consensus 131 s~Ll~~FF~vYS-~W~Wp~PV~L~~i~~g~l---g~~vWdP~------~~~~Dr~hlMPIITPayP~~NST~NVT~STl~ 200 (607)
+.||..||++|+ +|+|.++|+. +..|.. ....|+++ .++.++.+.|+|++|+.|.+|++++|+.++++
T Consensus 258 g~LL~~Ff~~Y~~~fd~~~~vIs--i~~~~~~~k~~~~w~~~~~~~~~~~~~~~~~~l~IeDP~~~~~N~~r~v~~~~~~ 335 (353)
T 2ikf_A 258 GTQVLDFLHFFLHEFDSDKQVIS--LNRPGITTKEELDWTKSAEDFARMNGEKVHYQWCIEDPYELNLNVGRNVTPLKRD 335 (353)
T ss_dssp HHHHHHHHHHHHHTSCTTTEEEC--SSSSSCEEHHHHTCSHHHHTTCEETTEECCCSSEEBCSSSTTCBTTTTCCHHHHH
T ss_pred HHHHHHHHHHhccccCcCceEEE--cCCCcceechhhcccccccccccccCCCCcceEEEECCCCCCCcccCCCCHHHHH
Confidence 899999999999 8999999863 222221 12357742 22334567999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 007342 201 IMMDEFQRGHEIC 213 (607)
Q Consensus 201 vI~~Ef~RA~~Il 213 (607)
.|++||+||+++|
T Consensus 336 ~i~~~f~~A~~~~ 348 (353)
T 2ikf_A 336 FLRRHLEKARDTA 348 (353)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999976
No 5
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.1e-29 Score=262.10 Aligned_cols=181 Identities=22% Similarity=0.338 Sum_probs=155.1
Q ss_pred CCCCCCccceeecCCCccceEEEEE--CceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhC
Q 007342 2 LTEMPEVTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLV 79 (607)
Q Consensus 2 L~~~p~Vtel~~V~dA~VPIIKf~~--~GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lV 79 (607)
|++.+.++++++|+.|+||||||+. .||+|||+|+. .+|+|.++.|.+++
T Consensus 103 L~~~~~~~~v~~I~~ArVPIIk~~~~~~gi~vDIs~~~----------------------------~~g~~~t~li~~~~ 154 (323)
T 3nyb_A 103 LKKKNLATEVEVVAKARVPIIKFVEPHSGIHIAVSFER----------------------------TNGIEAAKLIREWL 154 (323)
T ss_dssp HHHTTSCSSCEEEESSSCEEEEEEETTTTEEEEEESSC----------------------------SSTTHHHHHHHHHH
T ss_pred HhhCCCceEEEEEeccCCCEEEEEEcCCCceEEEEecC----------------------------cHHHHHHHHHHHHH
Confidence 4566788999999999999999996 89999999985 37999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhhCCCC---------ChHHHHHHHHHhhc-cCCCCCc
Q 007342 80 PKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNA---------VPSMLVSRFFRVYT-QWRWPNP 149 (607)
Q Consensus 80 Pn~~~FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQLyPna---------s~s~Ll~~FF~vYS-~W~Wp~P 149 (607)
+....||.++++||+|||+||||++..|+|||++|++||+++||++|+. +.+.||..||++|+ +|+|++.
T Consensus 155 ~~~~~~r~lv~~iK~wak~r~l~~~~~G~lssy~l~lmvi~fLQ~~p~~~~~~~~~~~~lg~LL~~Ff~~Y~~~Fd~~~~ 234 (323)
T 3nyb_A 155 DDTPGLRELVLIVKQFLHARRLNNVHTGGLGGFSIICLVFSFLHMHPRIITNEIDPKDNLGVLLIEFFELYGKNFGYDDV 234 (323)
T ss_dssp HSCTTHHHHHHHHHHHHHHTTCSCGGGTCCCHHHHHHHHHHHHHTCHHHHTTCBCGGGCHHHHHHHHHHHHHHTCCTTTE
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCccCCCcCHHHHHHHHHHHHHhCCccCcccCCccccHHHHHHHHHHHhccccCCCCc
Confidence 9999999999999999999999999999999999999999999999853 45799999999999 9999998
Q ss_pred eeccccccCC---CCCcccCCCCCCCCCcccceeecCCCCCCCcccccChhhHHHHHHHHHHHHHHHHH
Q 007342 150 VLLCAIEEGS---LGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEA 215 (607)
Q Consensus 150 V~L~~i~~g~---lg~~vWdP~~~~~Dr~hlMPIITPayP~~NST~NVT~STl~vI~~Ef~RA~~Il~~ 215 (607)
++- +..|. ..-..|..- ++..+.+.|+|++|+.|..|.+.++ ..++.|++||++|+++++.
T Consensus 235 ~Is--v~~g~~~~~~k~~~~~~-~~~~~~~~l~IeDP~~~~~nigr~~--~~~~~I~~~F~~A~~~L~~ 298 (323)
T 3nyb_A 235 ALG--SSDGYPVYFPKSTWSAI-QPIKNPFSLAIQDPGDESNNISRGS--FNIRDIKKAFAGAFDLLTN 298 (323)
T ss_dssp EEE--ESSSCEEEEEGGGCGGG-CSCSCSSSCCBEETTEEEEETTTTC--TTHHHHHHHHHHHHHHHHH
T ss_pred EEE--EecCCcceeeHHhcccc-cccCCCceEEEeCCCCCCcccccch--HHHHHHHHHHHHHHHHHHH
Confidence 763 34442 222456542 2223467999999999999998884 4688999999999999875
No 6
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=99.96 E-value=3.8e-29 Score=265.83 Aligned_cols=198 Identities=19% Similarity=0.270 Sum_probs=160.9
Q ss_pred ccceeecCCCccceEEEEE---C----ceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhCC
Q 007342 8 VTELHPVPDAHVPVMKFKF---S----GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVP 80 (607)
Q Consensus 8 Vtel~~V~dA~VPIIKf~~---~----GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lVP 80 (607)
..++.+|..|+||||||.+ . ||+|||+|.. .+|++.+..|..++.
T Consensus 129 ~~~v~~i~~ArVPIIK~~~d~~~g~~~gi~~DIs~~n----------------------------~~g~~~t~ll~~y~~ 180 (405)
T 4e8f_A 129 GFEGKFLQRARIPIIKLTSDTKNGFGASFQCDIGFNN----------------------------RLAIHNTLLLSSYTK 180 (405)
T ss_dssp TEEEEEEEETTEEEEEEEEESSSSCCTTCCEEEEESC----------------------------HHHHHHHHHHHHHHH
T ss_pred CCeeEEeccCCCcEEEEEeccCCCccCceEEEEeecc----------------------------cchHHHHHHHHHHHh
Confidence 4678999999999999997 3 9999999975 257888888887776
Q ss_pred ChhhHHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHH-hh-----CCC---------------------------
Q 007342 81 KIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARIC-QL-----YPN--------------------------- 127 (607)
Q Consensus 81 n~~~FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVC-QL-----yPn--------------------------- 127 (607)
....||.++++||+|||+||||++..|+|||++|++||+++| |. +|+
T Consensus 181 ~~p~~r~Lv~~lK~wak~rgl~~~~~GglsSY~l~lmvi~fLqQ~~~ppvlP~Lq~~~~~~~~~~~g~~~~f~~~l~~~~ 260 (405)
T 4e8f_A 181 LDARLKPMVLLVKHWAKRKQINSPYFGTLSSYGYVLMVLYYLIHVIKPPVFPNLLLSPLKQEKIVDGFDVGFDDKLEDIP 260 (405)
T ss_dssp HCTTHHHHHHHHHHHHHHTTCCCTTTTSCCHHHHHHHHHHHHHHTSSSCSSCCSSSCTTCCCCEETTEECCCCCCGGGSC
T ss_pred hCHHHHHHHHHHHHHHHHcCCCcCcCCCcChHHHHHHHHHHHHhccCCCcCCchhhcccccccccCCeeeccccchhhhc
Confidence 668999999999999999999999999999999999999999 73 232
Q ss_pred -----CChHHHHHHHHHhhc-cCCCCCceeccccc-cCC-CC--CcccCCCCC-------CCCCcccceeecCCCCCCCc
Q 007342 128 -----AVPSMLVSRFFRVYT-QWRWPNPVLLCAIE-EGS-LG--LQVWDPRRN-------PKDKYHLMPIITPAYPCMNS 190 (607)
Q Consensus 128 -----as~s~Ll~~FF~vYS-~W~Wp~PV~L~~i~-~g~-lg--~~vWdP~~~-------~~Dr~hlMPIITPayP~~NS 190 (607)
.+...||..||++|+ .|+|.+.|+- +. .|. +. .+.|....+ ..++.+.|+|.+|+.|.+|+
T Consensus 261 ~~~n~~slg~LL~~FF~yY~~~Fd~~~~vIs--ir~~g~~~~K~~k~w~~~~~~~g~~~~~~~~~~~L~IeDPf~~~~Nv 338 (405)
T 4e8f_A 261 PSQNYSSLGSLLHGFFRFYAYKFEPREKVVT--FRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNV 338 (405)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHTCCTTTBEEC--SSSTTCCCBHHHHTCCC-------------CCCSSEEBCSSSTTCBT
T ss_pred cccccccHHHHHHHHHHHHhcccCCCCcEEE--EecCCcccccccccccccccccccccccccCCceEEEECCCCccccc
Confidence 467899999999999 9999998864 33 332 22 246876421 11346799999999999999
Q ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCcchhhhc
Q 007342 191 SYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPFTFFEAY 238 (607)
Q Consensus 191 T~NVT~STl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~LFep~~FF~~Y 238 (607)
+++|+..+++.|++||+||+++++.... +.+|+.||+++++..+.
T Consensus 339 ~r~vs~~~~~~I~~eF~rA~~iL~~~~~---~~~w~~Lf~~~~~~~~~ 383 (405)
T 4e8f_A 339 GRTVSSSGLYRIRGEFMAASRLLNSRSY---PIPYDSLFEEAPIPPRR 383 (405)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCSSS---SCCGGGGGSCCCCC---
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHhhhcc---CCCHHHHhCcCCCcccc
Confidence 9999999999999999999999875321 33899999999998854
No 7
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=99.87 E-value=2.1e-23 Score=225.70 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=118.7
Q ss_pred hhhhhhchhhhHHHHHHhCCChhh-HHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhhC--------------
Q 007342 61 QTVRSLNGCRVTDQILRLVPKIQN-FRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLY-------------- 125 (607)
Q Consensus 61 ~svrSLNG~RVtd~IL~lVPn~~~-FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQLy-------------- 125 (607)
-|.. .+|++.++.|...+--... ||.+..+||+|||+|||++...|+||+++|++||++..|..
T Consensus 249 ISfn-~~gi~nS~ll~~y~~~dpr~~r~Lvl~vK~Wak~r~Ln~~~~G~LsSYal~lMVI~fLQ~~~~lP~v~P~vlP~l 327 (468)
T 2b4v_A 249 ISFV-GYGVKNSYLIRHYLHNGPVAARHTAMAVKAWGKATNVGAGSGAMLTSYAVTVMFIYYLLVTRQVLWVDPWSLPHP 327 (468)
T ss_dssp EESC-SHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHTCC-----CCSSCHHHHHHHHHHHHHHTTSSCCCCGGGSCCG
T ss_pred Eecc-hhHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHHhcCcCCCCCcccccch
Confidence 3454 7999999988877765567 99999999999999999999999999999999999998754
Q ss_pred ---CC------------CChHHHHHHHHHhhc-cCCCCCceeccccccCCC---CCcccCCCCCC-CCCcccceeecCCC
Q 007342 126 ---PN------------AVPSMLVSRFFRVYT-QWRWPNPVLLCAIEEGSL---GLQVWDPRRNP-KDKYHLMPIITPAY 185 (607)
Q Consensus 126 ---Pn------------as~s~Ll~~FF~vYS-~W~Wp~PV~L~~i~~g~l---g~~vWdP~~~~-~Dr~hlMPIITPay 185 (607)
|+ .+...||..||++|+ .|+|.+.|+- +..|.. ....|....+. ....+.|+|.+|+.
T Consensus 328 q~l~~~~~~~p~~~~n~~sLg~LL~~FF~yYg~~Fd~~~~vIS--ir~g~~~~K~~~~w~~~~n~~~~~~~~L~IeDPfd 405 (468)
T 2b4v_A 328 AHLPRYPDFSPLYDCDPTELGRLLHGFFIFYAHHFDYEREVVS--LNRNRRSYRSDIGWNFPQNKKGTFSYNFCIEDPYE 405 (468)
T ss_dssp GGSCSSCCCCCCCCCCHHHHHHHHHHHHHHHHHSSCTTTEEBC--SSSSSCEEHHHHTCCCGGGEETTEECSSCBBCSST
T ss_pred hhcccccCCCcccccCccCHHHHHHHHHHHHccccCCCCcEEE--ecCCcceecccccccccccccCCCcceEEEECCCC
Confidence 21 146889999999999 9999998752 333321 12357642110 11124799999999
Q ss_pred C----CCCcccccChhhHHHHHHHHHHHHHHHHHHH
Q 007342 186 P----CMNSSYNVSTSTLRIMMDEFQRGHEICEAME 217 (607)
Q Consensus 186 P----~~NST~NVT~STl~vI~~Ef~RA~~Il~~i~ 217 (607)
| ..|++++|+..+++.|++||++|+++|+...
T Consensus 406 ~~~~~~~Nvgr~v~~~~~~~I~~eF~~A~~~L~~~~ 441 (468)
T 2b4v_A 406 DVGTGGLNLVRHLHPAKFQLVKQEFLRAAQCMERFL 441 (468)
T ss_dssp TTTTTCCBTTTTCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9 9999999999999999999999999998644
No 8
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=99.78 E-value=1.6e-18 Score=183.53 Aligned_cols=192 Identities=17% Similarity=0.297 Sum_probs=142.3
Q ss_pred ccceeecCCCccceEEEEE--CceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhCCC-hhh
Q 007342 8 VTELHPVPDAHVPVMKFKF--SGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPK-IQN 84 (607)
Q Consensus 8 Vtel~~V~dA~VPIIKf~~--~GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lVPn-~~~ 84 (607)
++.+. |..|+||||||.. .||+|||+|.. .+|++.++.|..+.-- ...
T Consensus 104 ie~V~-ii~ARVPIIKf~d~~tgi~~DIS~nn----------------------------~~gi~ns~ll~~y~~~~p~r 154 (384)
T 3hj4_A 104 MEDVR-YIRARIPVVQFTDGVTGIHCDVSIGN----------------------------IGGVENSKILCAIRQVFPDF 154 (384)
T ss_dssp CEEEE-EECSSSCEEEEECTTTCCEEEEEECC----------------------------HHHHHHHHHHHHHHHTSHHH
T ss_pred eeEEe-ecCcccCEEEEEEcCCCeEEEEEecc----------------------------cchHHHHHHHHHHHhcCcHH
Confidence 44443 4599999999996 59999999976 2577888777777665 346
Q ss_pred HHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhhC---CCC---------------------------------
Q 007342 85 FRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLY---PNA--------------------------------- 128 (607)
Q Consensus 85 FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQLy---Pna--------------------------------- 128 (607)
||.++++||+||++|||+++..|+||+++|++||+..+|.. |+.
T Consensus 155 lr~LvllvK~Wak~rgLn~~~~GgLsSYaL~lMVI~fLQ~~~vLP~Lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~ 234 (384)
T 3hj4_A 155 YGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHD 234 (384)
T ss_dssp HHHHHHHHHHHHHHTTSBCGGGTSBCHHHHHHHHHHHHHHHTSSCCCCCCCSTTSCCCHHHHHHHHTTCCCCGGGGGCSS
T ss_pred HHHHHHHHHHHHHHcCCCCccCCCccHHHHHHHHHHHHhcCCCCCccccccccCCcccccccHhhhhhhcCCCCcCcCCC
Confidence 99999999999999999999999999999999999999963 221
Q ss_pred ---ChHHH----HHHHHHhhccCCCCCcee-ccccccC-C------------CC---CcccC-----CC-CCC-------
Q 007342 129 ---VPSML----VSRFFRVYTQWRWPNPVL-LCAIEEG-S------------LG---LQVWD-----PR-RNP------- 171 (607)
Q Consensus 129 ---s~s~L----l~~FF~vYS~W~Wp~PV~-L~~i~~g-~------------lg---~~vWd-----P~-~~~------- 171 (607)
+...| +..||+||+.|||.+-|+ |..+... . +| .+-|. |. ..+
T Consensus 235 N~~sLgeL~~~lL~~Ff~yY~~Fdf~~~vISi~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 314 (384)
T 3hj4_A 235 DDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFS 314 (384)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCCTTTBCBCSSSTTCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCSCCHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHheecCCCCCEEEecCCcccccccchhhhhhhhhccchhhhhhhhhhhccccCCCCCCCccc
Confidence 13345 889999999999998654 3221110 0 00 11232 10 001
Q ss_pred ---------CCCcccceeecCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCc
Q 007342 172 ---------KDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPF 232 (607)
Q Consensus 172 ---------~Dr~hlMPIITPayP~~NST~NVT~STl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~LFep~ 232 (607)
+....++.|-. +--..|+++.|+.+....|+.||+||++|+..-+.+ .+.+++|...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 380 (384)
T 3hj4_A 315 ASMQNETTQRPSNSPYVVED-FVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESE---LKFDEVFRES 380 (384)
T ss_dssp HHHHHHHHTSCSSSSCCBBC-TTTCCBTTTTSCGGGHHHHHHHHHHHHHHHTTTGGG---CCHHHHTCCC
T ss_pred cccCccccccccccceeeee-eccccccceecCccchhHHHHHHHHHHHHHhccccc---ccHHHHhhhc
Confidence 12245788888 889999999999999999999999999998753333 2677777543
No 9
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=99.76 E-value=8.3e-18 Score=181.88 Aligned_cols=150 Identities=16% Similarity=0.265 Sum_probs=123.7
Q ss_pred CCCccceeecCCCccceEEEEEC--ceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhCCCh
Q 007342 5 MPEVTELHPVPDAHVPVMKFKFS--GVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKI 82 (607)
Q Consensus 5 ~p~Vtel~~V~dA~VPIIKf~~~--GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lVPn~ 82 (607)
.|++++++.|..|+||||||... ||+|||+|.. .+|++.+..|....--.
T Consensus 244 ~~~~~~v~~I~~ARVPIIKf~~~~tgi~~DIS~nn----------------------------~~gi~ns~ll~~y~~~d 295 (464)
T 3pq1_A 244 GPGCVGVQKILNARCPLVRFSHQASGFQCALTTNN----------------------------RIALTSSELLYIYGALD 295 (464)
T ss_dssp STTEEEEEEECSSSSCEEEEEETTTCCEEEEECSC----------------------------TTHHHHHHHHHHHHTTC
T ss_pred CCCCceeEEecCCCCCEEEEEEcCCCeEEEEecCC----------------------------CcHHHHHHHHHHHHHhC
Confidence 36888999999999999999995 9999999976 25888898888887777
Q ss_pred hhHHHHHHHHHHHHHhhcCccCcccc-chhHHHHHHHHHHHhhC-----CC-----------------------------
Q 007342 83 QNFRTTLRCMRFWAKRRGVYSNVAGF-LGGINWALLVARICQLY-----PN----------------------------- 127 (607)
Q Consensus 83 ~~FR~aLR~IKlWAKrRGIYSNv~Gf-LGGIsWAILVArVCQLy-----Pn----------------------------- 127 (607)
..||.+..+||+|||+|||.+...|. ||+++|++||...+|.. |+
T Consensus 296 prlr~Lvl~vK~Wak~r~Ln~~~~Gg~LsSYsL~lMVI~fLQ~~~ppvLP~Lq~l~~~~~~~~~~~vdg~~~~F~~dl~~ 375 (464)
T 3pq1_A 296 SRVRALVFSVRCWARAHSLTSSIPGAWITNFSLTMMVIFFLQRRSPPILPTLDSLKTLADAEDKCVIEGNNCTFVRDLSR 375 (464)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCC--CCSCCHHHHHHHHHHHHHSCC-------CCSHHHHTTC------------------
T ss_pred ccHHHHHHHHHHHHHHhCCCccccCCCcCcHHHHHHHHHHHHccCCCcCCChHHhccccCcccceeeccccccccccHhh
Confidence 89999999999999999999999995 99999999999999974 21
Q ss_pred -------CChHHHHHHHHHhhccCCCCCceeccccccCCCCCcccCCCCCCCCCcccceeecCCCCCCCcccccChhhHH
Q 007342 128 -------AVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAYPCMNSSYNVSTSTLR 200 (607)
Q Consensus 128 -------as~s~Ll~~FF~vYS~W~Wp~PV~L~~i~~g~lg~~vWdP~~~~~Dr~hlMPIITPayP~~NST~NVT~STl~ 200 (607)
.+...|+..||+||++|||.+-|+- | ..|.+.||+.+.+.
T Consensus 376 l~~~~N~~slgeLL~gFF~yYa~FDf~~~vIs---------------------------I------~~Nvs~nV~~~~~~ 422 (464)
T 3pq1_A 376 IKPSQNTETLELLLKEFFEYFGNFAXXXXXXX---------------------------X------XXXXXXXVSQSQLQ 422 (464)
T ss_dssp ---CCCCCCHHHHHHHHHHHGGGCCCCCCCCC---------------------------C------C-------CHHHHH
T ss_pred cCCCCCcCCHHHHHHHHHHHHHhCCCcccccc---------------------------c------ccccccccCHHHHH
Confidence 1347899999999999999987631 1 79999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007342 201 IMMDEFQRGHEICEA 215 (607)
Q Consensus 201 vI~~Ef~RA~~Il~~ 215 (607)
.++.|+++|.-||+.
T Consensus 423 r~~~~~r~a~~il~~ 437 (464)
T 3pq1_A 423 KFVDLARESAWILQQ 437 (464)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999983
No 10
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ...
Probab=97.00 E-value=0.011 Score=63.93 Aligned_cols=214 Identities=17% Similarity=0.158 Sum_probs=130.6
Q ss_pred cCCCccceEEEEECceEEEEEecccCCCCCCCCCCCCcchhhhcCChhhhhhhchhhhHHHHHHhCCChhhHHHHHHHHH
Q 007342 14 VPDAHVPVMKFKFSGVSIDLLYARLSLWVIPEDLDISQDSILQNADEQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMR 93 (607)
Q Consensus 14 V~dA~VPIIKf~~~GI~IDLlFArL~~~~vPe~ldl~dd~lL~nlDe~svrSLNG~RVtd~IL~lVPn~~~FR~aLR~IK 93 (607)
+.-|--|-+...|.|+++|++=|=-. .+... +....|- ...-++++.+...+ ++...|.+|
T Consensus 92 ~~ya~hpyV~~~f~g~~vDVVP~y~v----~~g~~-----~~tavDr-------tp~H~~fv~~r~~~---~~~~VRLLK 152 (437)
T 1r89_A 92 IRYAEHPYVHGVVKGVEVDVVPCYKL----KEPKN-----IKSAVDR-------TPFHHKWLEGRIKG---KENEVRLLK 152 (437)
T ss_dssp EEESSSEEEEEEETTEEEEEEEEECC----SSSSC-----CCSHHHH-------HHHHHHHHTTTSTT---CHHHHHHHH
T ss_pred hhccCCceEEEEecceEEEEEEEEEc----cCCcc-----ccccccC-------cHHHHHHHHhhhhh---hhhHHHHHH
Confidence 34455688999999999999876211 11000 0000000 12345566554444 889999999
Q ss_pred HHHHhhcCccC--ccccchhHHHHHHHHHHHhhCCCCChHHHHHHHHHhhccCCCCCceeccccccCCCCCcccCCCCCC
Q 007342 94 FWAKRRGVYSN--VAGFLGGINWALLVARICQLYPNAVPSMLVSRFFRVYTQWRWPNPVLLCAIEEGSLGLQVWDPRRNP 171 (607)
Q Consensus 94 lWAKrRGIYSN--v~GfLGGIsWAILVArVCQLyPnas~s~Ll~~FF~vYS~W~Wp~PV~L~~i~~g~lg~~vWdP~~~~ 171 (607)
.|.|.-|+|++ ..+.+.|+..=+|+++. .+-..+|..+ + +|..++.+. ++.+ .
T Consensus 153 ~f~k~~~~ygse~k~~gfSsYllELLv~~y------G~f~~vl~~~----~--~w~~~~~Id-~~~~--------~---- 207 (437)
T 1r89_A 153 GFLKANGIYGAEYKVRGFSGYLCELLIVFY------GSFLETVKNA----R--RWTRRTVID-VAKG--------E---- 207 (437)
T ss_dssp HHHHHTTCBCCSTTTCCBCHHHHHHHHHHH------SSHHHHHHHH----T--TCCTTEEEE-GGGT--------E----
T ss_pred HHHHhCCcCCCcccCCCCCHHHHHHHHHHH------cCHHHHHHHH----H--HhCCCeEEe-cCCC--------c----
Confidence 99999999998 35669999999999992 2333344443 3 454466442 1111 0
Q ss_pred CCCcccceeecCCCCCCCcccccChhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCc--------chh---h-hcc
Q 007342 172 KDKYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEFQRGHEICEAMEKNEADVDWDTLFEPF--------TFF---E-AYK 239 (607)
Q Consensus 172 ~Dr~hlMPIITPayP~~NST~NVT~STl~vI~~Ef~RA~~Il~~i~~~~~~~~W~~LFep~--------~FF---~-~Yk 239 (607)
......+.||.|+-|..|.|.++|...+..+..+-+...+ .. + ..+|.|. ++- . +=.
T Consensus 208 ~~~~~PlvViDPvDp~rNVAa~~s~~~~~~~~~~a~~~l~-------~p---s-~~~f~~~~~~~~~~~~~~~~~~~r~t 276 (437)
T 1r89_A 208 VRKGEEFFVVDPVDEKRNVAANLSLDNLARFVHLCREFME-------AP---S-LGFFKPKHPLEIEPERLRKIVEERGT 276 (437)
T ss_dssp EEECSSCEEEETTEEEEETTTTCCHHHHHHHHHHHHHHHH-------SC---C-GGGGSCCCCCCCCHHHHHHHHHHHTC
T ss_pred ccCCCCEEEECCCCCCCchhhcCCHHHHHHHHHHHHHHHh-------Cc---c-HHhcCCCCccccCHHHHHHHHHhCCc
Confidence 0012467899999999999999999999988877666544 22 1 2344332 111 1 122
Q ss_pred cEEEEEEEecChhhhcchhhhhHHHHHHHHHHHhhccCcceeec
Q 007342 240 NYLRIDISAENADDLRNWKGWVESRLRQLTLKIERHTYNMLQCH 283 (607)
Q Consensus 240 ~yL~I~vsa~~~e~~~~W~GwVESRlR~Lv~~LE~~~~~~l~ah 283 (607)
+.+.|....++.-+ ...-|-++--.+.|...||+....++...
T Consensus 277 ~~~~~~f~~p~~~~-D~l~pQl~k~~~~i~~~L~~~gF~v~~~~ 319 (437)
T 1r89_A 277 AVFAVKFRKPDIVD-DNLYPQLERASRKIFEFLERENFMPLRSA 319 (437)
T ss_dssp EEEEEEEECCSCCH-HHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEECCCCCCc-ccchHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 46666665555322 23446666666777778888776666554
No 11
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6
Probab=95.98 E-value=0.18 Score=52.13 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhhCCCC---ChHHHHHHHHHhhccCCCCCceeccccccC
Q 007342 82 IQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNA---VPSMLVSRFFRVYTQWRWPNPVLLCAIEEG 158 (607)
Q Consensus 82 ~~~FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQLyPna---s~s~Ll~~FF~vYS~W~Wp~PV~L~~i~~g 158 (607)
...|+.+.|.+|.|-++.+. ....+.+.|+.+-+|++++....+.. +...-+..+|+..++|. +..|
T Consensus 201 ~~~~k~lIRLlK~W~~~~~~-~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~-~~~i-------- 270 (349)
T 1px5_A 201 PTKLKSLIRLVKHWYQTCKK-THGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQ-KLCI-------- 270 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-TCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGG-GCEE--------
T ss_pred cHHHHHHHHHHHHHHHHhhh-cccCCCCChHHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC-ccce--------
Confidence 46899999999999988874 22346689999999999988765543 34566788888888874 1122
Q ss_pred CCCCcccCCCCCCCC-----------CcccceeecCCCCCCCcccccChhhHHHHHHHH
Q 007342 159 SLGLQVWDPRRNPKD-----------KYHLMPIITPAYPCMNSSYNVSTSTLRIMMDEF 206 (607)
Q Consensus 159 ~lg~~vWdP~~~~~D-----------r~hlMPIITPayP~~NST~NVT~STl~vI~~Ef 206 (607)
.|.-.++..+ +...--|+.|+-|..|.+.. +.-....+..|-
T Consensus 271 -----~w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~NVa~~-~~~~~~~~~~~A 323 (349)
T 1px5_A 271 -----FWEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPTGNVGGG-DTHSWQRLAQEA 323 (349)
T ss_dssp -----CCCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTCBTTCS-CHHHHHHHHHHH
T ss_pred -----eeeccccccchhHHhhhhhhhcCCCCeeeCCCCCCCcccCC-chhhHHHHHHHH
Confidence 3543222222 01122599999999998877 777777777444
No 12
>4at7_B NF90, interleukin enhancer-binding factor 3; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_B* 4at9_B* 4atb_B*
Probab=24.09 E-value=5.2e+02 Score=27.57 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=80.4
Q ss_pred hhhhhhhchhhhHHHHHHhCCChhhHHHHHHHHHHHHHhhcCccCccccchhHHHHHHHHHHHhhCCC--CChHHHHHHH
Q 007342 60 EQTVRSLNGCRVTDQILRLVPKIQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPN--AVPSMLVSRF 137 (607)
Q Consensus 60 e~svrSLNG~RVtd~IL~lVPn~~~FR~aLR~IKlWAKrRGIYSNv~GfLGGIsWAILVArVCQLyPn--as~s~Ll~~F 137 (607)
..|+.+|-..|=+........+......++|.+|.-.+|.--+ +-|.+.+.=+|+-+.-- -++ .+++.-+.||
T Consensus 203 ~~cl~aLAalRhAkWFqara~~l~s~~ilIRilkdlc~R~~~~----~pL~~waLELL~~~ai~-s~~~~l~~~~afRRV 277 (383)
T 4at7_B 203 QKCLAALASLRHAKWFQARANGLKSCVIVIRVLRDLCTRVPTW----GPLRGWPLELLCEKSIG-TANRPMGAGEALRRV 277 (383)
T ss_dssp HHHHHHHHHHHHHHHCCCCCTTSTTHHHHHHHHHHHHHHCGGG----GGGTTHHHHHHHHHHHH-TSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHhcccCCCceEEeehhhHHHHhcCCc----CCCcHhHHHHHHHHHhh-CCCCCCCHHHHHHHH
Confidence 5789999999999998888888877889999999977775332 44664444455555543 233 4678889999
Q ss_pred HHhhccC-CCCC-ceeccccccCCCCCcccCCCCCCCCCcccceeecCCC--CCCCcccccChhhHHHHHHHHHHHHHHH
Q 007342 138 FRVYTQW-RWPN-PVLLCAIEEGSLGLQVWDPRRNPKDKYHLMPIITPAY--PCMNSSYNVSTSTLRIMMDEFQRGHEIC 213 (607)
Q Consensus 138 F~vYS~W-~Wp~-PV~L~~i~~g~lg~~vWdP~~~~~Dr~hlMPIITPay--P~~NST~NVT~STl~vI~~Ef~RA~~Il 213 (607)
|+..+.- --|. |++ +.||- |.-|.+ ..|.-....|+.+-+.+.+++
T Consensus 278 LEllasG~lLp~~pgI-----------------------------~DPcEk~pt~~~~-~lt~qq~e~it~sAQ~~LR~~ 327 (383)
T 4at7_B 278 LECLASGIVMPDGSGI-----------------------------YDPCEKEATDAIG-HLDRQQREDITQSAQHALRLA 327 (383)
T ss_dssp HHHHHTTTTSTTSCCC-----------------------------BCTTCSSCCBTTT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcccCCCCCc-----------------------------cCCCCCCCccccc-cCCHHHHHHHHHHHHHHHHHH
Confidence 9987742 2222 332 33343 444444 556666788888888877765
Done!