BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007343
(607 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XA7|B Chain B, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 592
Score = 351 bits (900), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 208/585 (35%), Positives = 332/585 (56%), Gaps = 23/585 (3%)
Query: 17 SGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSD 76
+ KGE+ +LK++L + ++E KKVI+ MT+G DVS++F ++V C T +
Sbjct: 10 NKKGEIFELKAELNNEKKEK-------RKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62
Query: 77 IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYL 136
+ LKK+ YLY+ NYAK PD+A++ +N +DC+D +P+IR LA+R++ +RV + EYL
Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYL 122
Query: 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCL 196
PL LKD + YVR A + V KL+ I+A D F +L+ L + D +P VVAN +
Sbjct: 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL-IADSNPMVVANAV 181
Query: 197 SALQEIWXXXXXXXXXXXXXXXXXXXKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS 256
+AL EI I LL + E +EW Q +L+ ++ Y P D
Sbjct: 182 AALSEISESHPNSNLLDLNPQN-------INKLLTALNECTEWGQIFILDCLSNYNPKDD 234
Query: 257 NEIFDIMNLLEDRLQHANGAVVLSTIKV---FLHLTLSMTDVHQQVYERIKAPLLTLVSS 313
E I + RL HAN AVVLS +KV FL L +D + + +++ PL+TL+ S
Sbjct: 235 REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S 293
Query: 314 GSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYE 373
G PE Y L +++++V + P I + K F+ +YN+P YVK KL+++ +A+++N +
Sbjct: 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353
Query: 374 IVTELCEYAANVDIPIARESIRAVGKIALQ-QYDVNAIVDRLLQFLEMEKDYVTAEALVL 432
++ EL EYA VD+ R+++RA+G+ A++ + V LL ++ + +YV EA+V+
Sbjct: 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVV 413
Query: 433 VKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTEN 492
++D+ RKYP IA + + ++ EP A+AA+IW++GEY++ + +A +LES E
Sbjct: 414 IRDIFRKYPNKYESIIATLCE-NLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEG 472
Query: 493 WEEEPSAEVRLHLLTAVMKCFFKRPPETQKVXXXXXXXXXXDFHQ-DVHDRALFYHRLLQ 551
+ +E S +V+L LLTA++K F K+P ETQ++ D D+ DR Y RLL
Sbjct: 473 FHDE-STQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531
Query: 552 YNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQK 596
+ A+ VV K +S D + D + SL+ VY K
Sbjct: 532 TDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHK 576
>pdb|2VGL|B Chain B, Ap2 Clathrin Adaptor Core
pdb|2JKR|B Chain B, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|E Chain E, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|B Chain B, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|E Chain E, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 591
Score = 351 bits (900), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 208/585 (35%), Positives = 332/585 (56%), Gaps = 23/585 (3%)
Query: 17 SGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSD 76
+ KGE+ +LK++L + ++E KKVI+ MT+G DVS++F ++V C T +
Sbjct: 10 NKKGEIFELKAELNNEKKEK-------RKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62
Query: 77 IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYL 136
+ LKK+ YLY+ NYAK PD+A++ +N +DC+D +P+IR LA+R++ +RV + EYL
Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYL 122
Query: 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCL 196
PL LKD + YVR A + V KL+ I+A D F +L+ L + D +P VVAN +
Sbjct: 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL-IADSNPMVVANAV 181
Query: 197 SALQEIWXXXXXXXXXXXXXXXXXXXKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS 256
+AL EI I LL + E +EW Q +L+ ++ Y P D
Sbjct: 182 AALSEISESHPNSNLLDLNPQN-------INKLLTALNECTEWGQIFILDCLSNYNPKDD 234
Query: 257 NEIFDIMNLLEDRLQHANGAVVLSTIKV---FLHLTLSMTDVHQQVYERIKAPLLTLVSS 313
E I + RL HAN AVVLS +KV FL L +D + + +++ PL+TL+ S
Sbjct: 235 REAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-S 293
Query: 314 GSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYE 373
G PE Y L +++++V + P I + K F+ +YN+P YVK KL+++ +A+++N +
Sbjct: 294 GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353
Query: 374 IVTELCEYAANVDIPIARESIRAVGKIALQ-QYDVNAIVDRLLQFLEMEKDYVTAEALVL 432
++ EL EYA VD+ R+++RA+G+ A++ + V LL ++ + +YV EA+V+
Sbjct: 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVV 413
Query: 433 VKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTEN 492
++D+ RKYP IA + + ++ EP A+AA+IW++GEY++ + +A +LES E
Sbjct: 414 IRDIFRKYPNKYESIIATLCE-NLDSLDEPDARAAMIWIVGEYAERIDNADELLESFLEG 472
Query: 493 WEEEPSAEVRLHLLTAVMKCFFKRPPETQKVXXXXXXXXXXDFHQ-DVHDRALFYHRLLQ 551
+ +E S +V+L LLTA++K F K+P ETQ++ D D+ DR Y RLL
Sbjct: 473 FHDE-STQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLS 531
Query: 552 YNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQK 596
+ A+ VV K +S D + D + SL+ VY K
Sbjct: 532 TDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHK 576
>pdb|1W63|B Chain B, Ap1 Clathrin Adaptor Core
pdb|1W63|D Chain D, Ap1 Clathrin Adaptor Core
pdb|1W63|F Chain F, Ap1 Clathrin Adaptor Core
pdb|1W63|H Chain H, Ap1 Clathrin Adaptor Core
pdb|1W63|J Chain J, Ap1 Clathrin Adaptor Core
pdb|1W63|L Chain L, Ap1 Clathrin Adaptor Core
Length = 584
Score = 336 bits (862), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 210/586 (35%), Positives = 333/586 (56%), Gaps = 25/586 (4%)
Query: 17 SGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSD 76
+ KGE+ +LK++L + K+E KKVI+ MT+G DVSA+F ++V C T +
Sbjct: 10 TKKGEIFELKAELNS-------DKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62
Query: 77 IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYL 136
+ LKK+ YLY+ NYAK PD+A++ +N +DC+D +P+IR LA+R++ +RV + EYL
Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVDKITEYL 122
Query: 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCL 196
PL LKD + YVR A + V KL+ I+A D F TLK L ++D +P VVAN +
Sbjct: 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDTLKDL-ISDSNPMVVANRV 181
Query: 197 SALQEIWXXXXXXXXXXXXXXXXXXXKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS 256
+AL EI I LL + E +EWAQ +L+ + Y+P D
Sbjct: 182 AALSEIAESHPSSNLLDLKAQS-------INKLLTALNECTEWAQIFILDCLGNYMPKDD 234
Query: 257 NEIFDIMNLLEDRLQHANGAVVLSTIKV---FLHLTLSMTDVHQQVYERIKAPLLTLVSS 313
E I + RL HAN AVVLS +KV F+ + D + + +++ PL+TL+ S
Sbjct: 235 REAQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLSKDLDYYATLLKKLAPPLVTLL-S 293
Query: 314 GSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYE 373
PE Y L +++++V + P I + K F+ +YN+P YVK KL+++ +A+++N +
Sbjct: 294 AEPEPQYVPLRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQ 353
Query: 374 IVTELCEYAANVDIPIARESIRAVGKIALQ-QYDVNAIVDRLLQFLEMEKDYVTAEALVL 432
++ EL EYA VD+ R+++RA+G+ A++ + V LL ++ + +YV EA+V+
Sbjct: 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVV 413
Query: 433 VKDLLRKYPQWSHDCIAVV-GSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTE 491
+KD+ RKYP IA + ++ S + EP+A+AA+IW++GEY++ +A +LES +
Sbjct: 414 IKDIFRKYPNKYESVIATLCENLDSDD--EPEARAAMIWIVGEYAERSDNADELLESFLD 471
Query: 492 NWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVXXXXXXXXXXDFHQ-DVHDRALFYHRLL 550
+ +E S +V+L LLTA++K F K+P ETQ++ D D+ DR Y RLL
Sbjct: 472 GFHDE-STQVQLQLLTAIVKLFLKKPTETQELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530
Query: 551 QYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQK 596
+ A+ VV K +S D + D + +L+ VY K
Sbjct: 531 STDPVAAKEVVLAEKPLISEETDLIEPTLLDELICYIGTLASVYHK 576
>pdb|2VGL|A Chain A, Ap2 Clathrin Adaptor Core
pdb|2XA7|A Chain A, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 621
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 96/456 (21%), Positives = 172/456 (37%), Gaps = 65/456 (14%)
Query: 19 KGEVSDLKSQLRQLAGSRAPGIDD------SKRELFKKVISYMTIGIDVSAVFGEMVMCS 72
K + +++K ++LA R+ D SK++ K++ +G D+ E V
Sbjct: 24 KSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLL 83
Query: 73 ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANL 132
+++ K++ YL++ N +L L N ++ D +P GLAL + ++ +
Sbjct: 84 SSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREM 143
Query: 133 VEYLVG--PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190
E G P L D V+ A + +L+LY S D+ + HL LND
Sbjct: 144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHL-LNDQHLG 202
Query: 191 VVANCLSALQEIWXXXXXXXXXXXXXXXXXXXKPV----------IYYLLNRIKEFSEWA 240
VV S + + + V YY + + W
Sbjct: 203 VVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVP-----APWL 257
Query: 241 QCLVLELVAKYVPLDSNEIFD--------IMNLLED-----RLQHANG--AVVLSTIKVF 285
+L L+ Y P + + I+N ++ ++QH+N AV+ I +
Sbjct: 258 SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI 317
Query: 286 LHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY 345
+H D + R L + Y L + L +S++ H
Sbjct: 318 IH-----HDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA-------SSEFSHEA 365
Query: 346 CQYNEPSYVKKLKLE-----------MLTAVANESNTYEIVTELCEYAANVDIPIARESI 394
+ + + + LK E +L A+ + SN +IV E+ Y D I E +
Sbjct: 366 VKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIV 425
Query: 395 RAVGKIALQQYDVNAI--VDRLLQFLEMEKDYVTAE 428
V +A ++Y V+ VD +L + + DYV+ E
Sbjct: 426 LKVAILA-EKYAVDYTWYVDTILNLIRIAGDYVSEE 460
>pdb|2JKR|A Chain A, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|L Chain L, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|A Chain A, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|L Chain L, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 623
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 124/593 (20%), Positives = 220/593 (37%), Gaps = 92/593 (15%)
Query: 19 KGEVSDLKSQLRQLAGSRAPGIDD------SKRELFKKVISYMTIGIDVSAVFGEMVMCS 72
K + +++K ++LA R+ D SK++ K++ +G D+ E V
Sbjct: 24 KSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLL 83
Query: 73 ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANL 132
+++ K++ YL++ N +L L N ++ D +P GLAL + ++ +
Sbjct: 84 SSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREM 143
Query: 133 VEYLVG--PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190
E G P L D V+ A + +L+LY S D+ + HL LND
Sbjct: 144 AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHL-LNDQHLG 202
Query: 191 VVANCLSALQEIWXXXXXXXXXXXXXXXXXXXKPV----------IYYLLNRIKEFSEWA 240
VV S + + + V YY + + W
Sbjct: 203 VVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVP-----APWL 257
Query: 241 QCLVLELVAKYVPLDSNEIFD--------IMNLLED-----RLQHANG--AVVLSTIKVF 285
+L L+ Y P + + I+N ++ ++QH+N AV+ I +
Sbjct: 258 SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLI 317
Query: 286 LHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY 345
+H D + R L + Y L + L +S++ H
Sbjct: 318 IH-----HDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA-------SSEFSHEA 365
Query: 346 CQYNEPSYVKKLKLE-----------MLTAVANESNTYEIVTELCEYAANVDIPIARESI 394
+ + + + LK E +L A+ + SN +IV E+ Y D I E +
Sbjct: 366 VKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIV 425
Query: 395 RAVGKIALQQYDVNAI--VDRLLQFLEMEKDYVTAEA------LVLVKDLLRKYPQWSHD 446
V +A ++Y V+ VD +L + + DYV+ E +V+ +D ++ Y
Sbjct: 426 LKVAILA-EKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGY------ 478
Query: 447 CIAVVGSISSQNVQEPKAKAALI----WMLGEYSQ----DMQDAPYILESLTENWEEEPS 498
+ +Q P L+ ++LGE+ D + +P I +L + S
Sbjct: 479 ----AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCS 534
Query: 499 AEVRLHLLTAVMKCFFKRPPETQKVXXXXXXXXXXDFHQDV--HDRALFYHRL 549
R LL+ +K F PE + + DV RA+ Y RL
Sbjct: 535 VPTRALLLSTYIK-FVNLFPEVKATIQDVLRSDSQLKNADVELQQRAVEYLRL 586
>pdb|1W63|A Chain A, Ap1 Clathrin Adaptor Core
pdb|1W63|C Chain C, Ap1 Clathrin Adaptor Core
pdb|1W63|E Chain E, Ap1 Clathrin Adaptor Core
pdb|1W63|G Chain G, Ap1 Clathrin Adaptor Core
pdb|1W63|I Chain I, Ap1 Clathrin Adaptor Core
pdb|1W63|K Chain K, Ap1 Clathrin Adaptor Core
Length = 618
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 63 AVFG--EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120
A FG E + A+ K++ YL D+ LL N ++ D ++GLA
Sbjct: 68 AHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLA 127
Query: 121 LRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180
L +L + + + L G + LK +NSY+R A + + + P ++ F P K
Sbjct: 128 LCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR-KVPELMEM-FLPATK 185
Query: 181 HLMLNDPDPQVVANCLSALQEI 202
+L LN+ + V+ + L E+
Sbjct: 186 NL-LNEKNHGVLHTSVVLLTEM 206
>pdb|3L5A|A Chain A, Crystal Structure Of A Probable Nadh-Dependent Flavin
Oxidoreductase From Staphylococcus Aureus
Length = 419
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 295 VHQQVYERIKAPLLTLVSSG--SPEQSYAVLSHLHILVMRAPFIFASDYKH 343
V+Q VYE + + + S G SPE + L H + +PF+ D+ H
Sbjct: 307 VNQIVYEHLAGRIPLIASGGINSPESALDALQHADXVGXSSPFVTEPDFVH 357
>pdb|2YBX|A Chain A, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human
Phosphatidylinositol-5-Phosphate 4-Kinase Type-2 Alpha
Length = 394
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 18/160 (11%)
Query: 297 QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-----HFYCQYNEP 351
+ +Y + PLL+++ G S LSH+ I VM P F + K H + + N P
Sbjct: 16 ENLYFQSMDPLLSVLMWGV-NHSINELSHVQIPVMLMPDDFKAYSKIKVDNHLFNKENMP 74
Query: 352 SYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIV 411
S+ K K N + I + + + P+ +S G YD I+
Sbjct: 75 SHFK-FKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYII 133
Query: 412 DRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVV 451
+T+E + + ++L+KY Q+ +C +
Sbjct: 134 KT-----------ITSEDVAEMHNILKKYHQYIVECHGIT 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,298,262
Number of Sequences: 62578
Number of extensions: 609309
Number of successful extensions: 1395
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 14
length of query: 607
length of database: 14,973,337
effective HSP length: 104
effective length of query: 503
effective length of database: 8,465,225
effective search space: 4258008175
effective search space used: 4258008175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)