Query 007343
Match_columns 607
No_of_seqs 235 out of 1406
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 22:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00429 beta-adaptin; Provisi 100.0 6E-114 1E-118 966.6 58.8 574 11-606 23-602 (746)
2 KOG1061 Vesicle coat complex A 100.0 2E-110 5E-115 899.1 42.7 578 11-606 4-582 (734)
3 KOG1060 Vesicle coat complex A 100.0 2.3E-88 5E-93 720.8 39.3 543 20-599 35-615 (968)
4 PF01602 Adaptin_N: Adaptin N 100.0 6.4E-79 1.4E-83 679.9 39.1 509 21-552 5-524 (526)
5 KOG1077 Vesicle coat complex A 100.0 5.3E-78 1.2E-82 634.2 43.1 544 20-588 35-619 (938)
6 KOG1062 Vesicle coat complex A 100.0 1.8E-74 3.8E-79 618.5 43.3 529 19-570 31-598 (866)
7 COG5096 Vesicle coat complex, 100.0 7.2E-72 1.6E-76 612.9 38.0 574 8-605 1-625 (757)
8 KOG1059 Vesicle coat complex A 100.0 5E-60 1.1E-64 500.5 37.1 509 20-551 36-576 (877)
9 KOG1058 Vesicle coat complex C 100.0 7.4E-48 1.6E-52 409.4 32.2 430 22-484 22-470 (948)
10 KOG1078 Vesicle coat complex C 100.0 1.9E-35 4.2E-40 317.4 37.9 495 22-551 24-531 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 1.3E-31 2.7E-36 278.3 36.9 507 20-552 22-555 (898)
12 PF01602 Adaptin_N: Adaptin N 99.5 5.2E-12 1.1E-16 141.2 24.2 328 70-420 86-425 (526)
13 PRK09687 putative lyase; Provi 99.2 2.3E-09 5E-14 109.6 22.0 260 12-327 15-278 (280)
14 PRK13800 putative oxidoreducta 99.2 8.1E-09 1.7E-13 122.2 28.4 271 102-432 623-893 (897)
15 PTZ00429 beta-adaptin; Provisi 99.2 3.9E-07 8.5E-12 104.2 40.1 447 107-585 75-539 (746)
16 PRK09687 putative lyase; Provi 99.2 4.8E-09 1E-13 107.3 21.6 196 100-328 23-218 (280)
17 PLN03200 cellulose synthase-in 99.1 1.7E-06 3.8E-11 106.4 41.9 413 136-561 190-732 (2102)
18 PLN03200 cellulose synthase-in 99.0 5.2E-07 1.1E-11 110.9 35.9 354 69-438 410-811 (2102)
19 PRK13800 putative oxidoreducta 99.0 9.3E-08 2E-12 113.3 28.3 257 114-435 608-864 (897)
20 PF10508 Proteasom_PSMB: Prote 99.0 9.7E-07 2.1E-11 98.0 34.4 419 43-512 17-463 (503)
21 PF12717 Cnd1: non-SMC mitotic 99.0 2.2E-08 4.7E-13 95.7 15.6 145 113-272 1-157 (178)
22 KOG0212 Uncharacterized conser 98.7 2.6E-05 5.5E-10 83.5 30.6 330 98-439 40-407 (675)
23 PF10508 Proteasom_PSMB: Prote 98.7 1.3E-05 2.9E-10 88.9 30.2 332 43-384 53-440 (503)
24 KOG2171 Karyopherin (importin) 98.7 6.4E-05 1.4E-09 86.8 34.8 426 104-545 8-497 (1075)
25 KOG1060 Vesicle coat complex A 98.7 7.9E-05 1.7E-09 82.5 33.7 405 109-548 44-490 (968)
26 KOG2023 Nuclear transport rece 98.6 3.9E-05 8.5E-10 83.4 28.5 452 118-586 376-882 (885)
27 KOG1059 Vesicle coat complex A 98.6 0.00018 3.9E-09 79.1 32.5 345 53-420 98-461 (877)
28 KOG0166 Karyopherin (importin) 98.6 2.9E-05 6.4E-10 83.9 26.0 291 93-404 78-395 (514)
29 KOG2171 Karyopherin (importin) 98.6 0.00078 1.7E-08 78.1 38.4 514 65-596 6-598 (1075)
30 PF13646 HEAT_2: HEAT repeats; 98.4 2.6E-06 5.7E-11 71.0 9.4 87 102-200 1-88 (88)
31 KOG2023 Nuclear transport rece 98.3 0.00022 4.7E-09 77.9 25.3 409 70-529 20-520 (885)
32 KOG1058 Vesicle coat complex C 98.3 9.7E-05 2.1E-09 81.5 20.7 326 136-494 100-443 (948)
33 KOG0166 Karyopherin (importin) 98.2 0.0017 3.8E-08 70.5 28.5 283 42-332 81-394 (514)
34 KOG0212 Uncharacterized conser 98.1 0.0011 2.4E-08 71.4 25.0 315 55-381 72-423 (675)
35 KOG1824 TATA-binding protein-i 98.1 0.031 6.8E-07 63.8 35.4 214 115-334 148-405 (1233)
36 KOG0213 Splicing factor 3b, su 98.0 0.013 2.8E-07 65.2 30.5 453 42-552 650-1139(1172)
37 KOG1020 Sister chromatid cohes 97.9 0.088 1.9E-06 63.1 35.8 162 76-251 793-958 (1692)
38 KOG1241 Karyopherin (importin) 97.8 0.011 2.4E-07 66.0 26.8 337 77-421 340-731 (859)
39 PF14764 SPG48: AP-5 complex s 97.8 0.035 7.6E-07 59.7 29.9 98 463-562 325-455 (459)
40 KOG0213 Splicing factor 3b, su 97.8 0.052 1.1E-06 60.6 31.3 130 71-203 449-584 (1172)
41 TIGR02270 conserved hypothetic 97.8 0.0012 2.5E-08 71.2 18.7 89 101-203 87-175 (410)
42 COG1413 FOG: HEAT repeat [Ener 97.8 0.0024 5.2E-08 67.2 20.7 187 64-290 44-242 (335)
43 COG1413 FOG: HEAT repeat [Ener 97.8 0.0042 9.1E-08 65.4 22.0 93 100-204 43-135 (335)
44 COG5240 SEC21 Vesicle coat com 97.8 0.0039 8.4E-08 67.3 21.0 293 80-400 244-553 (898)
45 KOG1062 Vesicle coat complex A 97.8 0.014 3.1E-07 65.5 26.0 248 64-332 143-415 (866)
46 KOG1241 Karyopherin (importin) 97.7 0.082 1.8E-06 59.3 30.4 522 40-604 230-823 (859)
47 KOG1824 TATA-binding protein-i 97.7 0.047 1E-06 62.4 28.7 304 94-419 811-1151(1233)
48 KOG1078 Vesicle coat complex C 97.7 0.025 5.4E-07 63.5 26.2 389 42-457 115-514 (865)
49 PF04826 Arm_2: Armadillo-like 97.6 0.0051 1.1E-07 62.0 18.2 226 140-393 17-253 (254)
50 KOG1061 Vesicle coat complex A 97.6 0.03 6.4E-07 63.0 25.2 121 46-168 63-193 (734)
51 TIGR02270 conserved hypothetic 97.5 0.016 3.4E-07 62.6 22.0 249 121-436 45-294 (410)
52 KOG4224 Armadillo repeat prote 97.5 0.0084 1.8E-07 61.6 18.2 317 68-426 90-434 (550)
53 KOG0414 Chromosome condensatio 97.5 0.00063 1.4E-08 78.8 11.2 143 61-206 917-1066(1251)
54 PF12348 CLASP_N: CLASP N term 97.4 0.00065 1.4E-08 67.4 9.6 183 21-207 4-209 (228)
55 KOG2259 Uncharacterized conser 97.4 0.23 4.9E-06 55.1 28.4 339 92-443 150-516 (823)
56 KOG0414 Chromosome condensatio 97.4 0.54 1.2E-05 55.5 33.3 154 53-207 260-431 (1251)
57 PF12717 Cnd1: non-SMC mitotic 97.3 0.0059 1.3E-07 58.2 14.6 93 148-254 1-93 (178)
58 KOG1242 Protein containing ada 97.3 0.096 2.1E-06 57.7 25.0 404 45-507 113-557 (569)
59 PF05804 KAP: Kinesin-associat 97.3 0.021 4.5E-07 65.3 20.3 315 112-445 262-613 (708)
60 cd00020 ARM Armadillo/beta-cat 97.3 0.00075 1.6E-08 59.0 7.0 108 136-251 8-118 (120)
61 cd00020 ARM Armadillo/beta-cat 97.3 0.00057 1.2E-08 59.7 6.3 102 101-203 8-119 (120)
62 KOG1020 Sister chromatid cohes 97.2 0.87 1.9E-05 55.1 35.1 141 65-206 818-962 (1692)
63 PF13646 HEAT_2: HEAT repeats; 97.2 0.0018 3.8E-08 53.7 8.5 84 67-160 3-88 (88)
64 COG5181 HSH155 U2 snRNP splice 97.1 0.37 7.9E-06 53.1 26.2 304 57-419 435-775 (975)
65 COG5096 Vesicle coat complex, 97.1 0.2 4.4E-06 57.4 25.3 172 103-291 21-196 (757)
66 COG5064 SRP1 Karyopherin (impo 97.1 0.03 6.6E-07 57.2 16.5 214 101-326 158-393 (526)
67 PF05918 API5: Apoptosis inhib 97.0 0.32 6.9E-06 54.1 25.1 135 65-203 25-161 (556)
68 PF12348 CLASP_N: CLASP N term 96.9 0.023 5E-07 56.2 14.8 181 144-335 16-210 (228)
69 COG5181 HSH155 U2 snRNP splice 96.9 0.92 2E-05 50.1 29.8 101 101-202 282-388 (975)
70 PF04826 Arm_2: Armadillo-like 96.9 0.019 4.1E-07 57.9 14.0 149 173-332 11-164 (254)
71 COG5098 Chromosome condensatio 96.9 0.0082 1.8E-07 66.1 11.9 194 44-253 870-1076(1128)
72 KOG4224 Armadillo repeat prote 96.9 0.13 2.9E-06 53.1 19.8 284 42-333 182-495 (550)
73 KOG1240 Protein kinase contain 96.9 0.016 3.5E-07 67.6 14.7 235 41-290 476-725 (1431)
74 COG5098 Chromosome condensatio 96.8 0.01 2.2E-07 65.5 11.5 133 74-207 273-418 (1128)
75 PF13513 HEAT_EZ: HEAT-like re 96.8 0.003 6.6E-08 47.6 5.5 49 114-162 1-55 (55)
76 KOG1240 Protein kinase contain 96.8 0.44 9.5E-06 56.3 24.7 266 97-383 459-778 (1431)
77 PF02985 HEAT: HEAT repeat; I 96.7 0.0027 5.8E-08 41.9 3.7 30 136-165 1-30 (31)
78 KOG2259 Uncharacterized conser 96.7 1.6 3.4E-05 48.7 27.3 387 145-549 89-548 (823)
79 KOG0168 Putative ubiquitin fus 96.6 0.44 9.5E-06 54.3 22.8 179 101-289 168-363 (1051)
80 PF12755 Vac14_Fab1_bd: Vacuol 96.6 0.0066 1.4E-07 51.7 6.8 67 129-196 21-89 (97)
81 KOG2025 Chromosome condensatio 96.5 2.1 4.7E-05 48.1 29.4 94 104-199 89-188 (892)
82 KOG1525 Sister chromatid cohes 96.4 0.77 1.7E-05 55.8 24.4 242 307-552 187-472 (1266)
83 KOG1242 Protein containing ada 96.4 1.7 3.7E-05 48.2 25.0 133 145-288 27-161 (569)
84 COG5215 KAP95 Karyopherin (imp 96.3 0.72 1.6E-05 50.5 20.9 85 86-170 351-443 (858)
85 PF05804 KAP: Kinesin-associat 96.2 1.2 2.6E-05 51.3 23.7 336 65-441 292-651 (708)
86 cd00256 VATPase_H VATPase_H, r 96.1 0.95 2.1E-05 49.0 21.0 329 175-515 54-426 (429)
87 KOG0915 Uncharacterized conser 95.7 7.4 0.00016 47.7 35.3 411 70-534 825-1327(1702)
88 KOG0211 Protein phosphatase 2A 95.6 6 0.00013 46.0 29.7 455 45-551 180-663 (759)
89 KOG2956 CLIP-associating prote 95.6 0.29 6.2E-06 52.4 14.4 168 8-182 271-491 (516)
90 KOG0567 HEAT repeat-containing 95.4 0.098 2.1E-06 51.9 9.5 93 100-203 187-279 (289)
91 KOG1949 Uncharacterized conser 95.4 0.25 5.4E-06 55.1 13.4 139 99-251 173-329 (1005)
92 KOG1248 Uncharacterized conser 95.4 4.5 9.7E-05 48.2 24.1 79 255-333 821-900 (1176)
93 smart00638 LPD_N Lipoprotein N 95.4 0.14 3E-06 58.2 12.2 96 101-202 447-543 (574)
94 KOG1077 Vesicle coat complex A 95.2 7.4 0.00016 44.0 33.1 338 78-441 58-436 (938)
95 PF10363 DUF2435: Protein of u 95.1 0.05 1.1E-06 45.8 5.7 69 102-170 5-78 (92)
96 PF12719 Cnd3: Nuclear condens 95.0 0.85 1.8E-05 47.2 15.9 145 372-542 25-175 (298)
97 KOG2062 26S proteasome regulat 95.0 0.42 9.1E-06 53.7 13.8 141 51-205 472-619 (929)
98 PF13513 HEAT_EZ: HEAT-like re 94.9 0.0072 1.6E-07 45.5 0.1 53 149-202 1-55 (55)
99 KOG0915 Uncharacterized conser 94.8 6.7 0.00015 48.0 23.7 353 44-405 1014-1430(1702)
100 KOG1517 Guanine nucleotide bin 94.8 0.16 3.4E-06 58.9 10.2 137 64-205 513-672 (1387)
101 KOG0946 ER-Golgi vesicle-tethe 94.8 9.9 0.00021 43.6 27.9 161 131-295 22-200 (970)
102 PF05918 API5: Apoptosis inhib 94.7 0.68 1.5E-05 51.6 14.5 144 112-273 34-190 (556)
103 PF13251 DUF4042: Domain of un 94.5 2.4 5.2E-05 40.5 16.1 127 177-334 42-177 (182)
104 KOG1248 Uncharacterized conser 94.5 12 0.00025 44.9 24.4 270 53-368 601-899 (1176)
105 KOG1820 Microtubule-associated 94.5 1.1 2.5E-05 52.2 16.3 195 130-334 248-446 (815)
106 PF12830 Nipped-B_C: Sister ch 94.2 0.46 9.9E-06 45.7 10.6 155 100-267 8-184 (187)
107 PF12460 MMS19_C: RNAPII trans 94.2 5.9 0.00013 43.1 20.5 211 78-294 163-398 (415)
108 KOG2062 26S proteasome regulat 94.1 1.6 3.5E-05 49.3 15.6 150 42-204 499-653 (929)
109 KOG4413 26S proteasome regulat 93.9 9 0.00019 39.6 21.3 239 44-292 63-335 (524)
110 COG5064 SRP1 Karyopherin (impo 93.8 2 4.3E-05 44.4 14.6 283 145-438 125-443 (526)
111 KOG0211 Protein phosphatase 2A 93.8 3.6 7.8E-05 47.8 18.6 258 61-332 396-665 (759)
112 COG5218 YCG1 Chromosome conden 93.8 14 0.00029 41.2 22.5 252 75-337 61-347 (885)
113 KOG1943 Beta-tubulin folding c 93.4 21 0.00046 42.4 23.7 243 129-418 335-591 (1133)
114 KOG2274 Predicted importin 9 [ 93.4 13 0.00028 43.3 21.4 298 236-568 462-796 (1005)
115 PF10363 DUF2435: Protein of u 93.1 0.47 1E-05 39.9 7.6 68 139-207 7-75 (92)
116 KOG1822 Uncharacterized conser 93.0 8.7 0.00019 48.1 20.3 110 96-206 872-990 (2067)
117 PF08713 DNA_alkylation: DNA a 92.7 0.35 7.5E-06 47.2 7.2 130 68-207 56-187 (213)
118 PF14500 MMS19_N: Dos2-interac 92.3 14 0.00031 37.4 19.6 102 313-416 135-253 (262)
119 PF08167 RIX1: rRNA processing 92.2 2 4.4E-05 40.3 11.5 121 300-445 23-150 (165)
120 PF12719 Cnd3: Nuclear condens 92.0 7.7 0.00017 40.1 16.7 66 139-207 31-96 (298)
121 smart00638 LPD_N Lipoprotein N 91.8 27 0.00058 39.6 22.6 228 42-292 288-547 (574)
122 KOG0413 Uncharacterized conser 91.8 9.9 0.00021 44.5 17.8 103 100-203 576-684 (1529)
123 KOG1949 Uncharacterized conser 91.7 1.6 3.5E-05 49.0 11.3 149 128-288 166-329 (1005)
124 PF01347 Vitellogenin_N: Lipop 91.6 0.19 4.1E-06 57.6 4.6 99 98-202 488-587 (618)
125 KOG2160 Armadillo/beta-catenin 91.1 1.3 2.8E-05 46.1 9.5 104 142-252 131-239 (342)
126 COG5218 YCG1 Chromosome conden 90.9 14 0.00031 41.0 17.2 168 34-206 57-268 (885)
127 PF01347 Vitellogenin_N: Lipop 90.6 17 0.00036 41.7 19.2 190 77-291 378-590 (618)
128 PF02985 HEAT: HEAT repeat; I 89.6 0.62 1.3E-05 30.5 3.8 28 176-204 2-29 (31)
129 PF14664 RICTOR_N: Rapamycin-i 89.4 33 0.00073 36.7 19.4 206 309-517 33-272 (371)
130 KOG4500 Rho/Rac GTPase guanine 89.3 12 0.00026 40.1 14.7 234 97-338 266-526 (604)
131 KOG2160 Armadillo/beta-catenin 89.0 6.5 0.00014 41.0 12.5 139 379-517 130-285 (342)
132 PF02854 MIF4G: MIF4G domain; 88.8 13 0.00028 35.4 14.2 148 358-514 3-163 (209)
133 KOG1293 Proteins containing ar 88.6 30 0.00064 39.1 17.8 175 108-291 339-534 (678)
134 COG5116 RPN2 26S proteasome re 88.4 7.3 0.00016 43.0 12.7 147 45-204 463-615 (926)
135 PF12755 Vac14_Fab1_bd: Vacuol 88.0 2.3 5E-05 36.2 7.2 69 482-551 25-96 (97)
136 PF01603 B56: Protein phosphat 87.8 21 0.00046 38.7 16.3 188 373-561 133-341 (409)
137 KOG0413 Uncharacterized conser 87.5 2.1 4.5E-05 49.7 8.4 125 80-206 948-1075(1529)
138 PF08506 Cse1: Cse1; InterPro 87.3 1.5 3.2E-05 46.9 7.0 117 42-159 225-370 (370)
139 KOG2759 Vacuolar H+-ATPase V1 87.0 14 0.0003 39.5 13.5 72 260-332 365-439 (442)
140 KOG2213 Apoptosis inhibitor 5/ 87.0 46 0.00099 35.4 25.0 78 67-145 29-106 (460)
141 KOG2933 Uncharacterized conser 86.7 11 0.00023 38.8 12.1 87 81-170 71-164 (334)
142 COG5116 RPN2 26S proteasome re 86.6 14 0.00031 40.8 13.6 26 176-202 623-648 (926)
143 smart00543 MIF4G Middle domain 86.1 27 0.00058 33.1 14.6 65 367-432 12-76 (200)
144 PF05004 IFRD: Interferon-rela 84.8 34 0.00074 35.6 15.4 61 102-162 88-158 (309)
145 KOG0168 Putative ubiquitin fus 84.7 13 0.00028 43.1 12.6 175 226-405 169-367 (1051)
146 KOG2032 Uncharacterized conser 84.5 68 0.0015 35.2 19.5 161 44-208 196-375 (533)
147 KOG1243 Protein kinase [Genera 84.3 6.1 0.00013 44.7 10.0 158 43-201 290-473 (690)
148 PF11698 V-ATPase_H_C: V-ATPas 84.2 1.9 4.2E-05 38.0 4.9 52 113-164 57-115 (119)
149 PF12765 Cohesin_HEAT: HEAT re 84.2 0.94 2E-05 32.1 2.5 38 159-197 3-40 (42)
150 cd03561 VHS VHS domain family; 83.5 17 0.00038 32.6 11.1 87 82-168 19-116 (133)
151 PF11698 V-ATPase_H_C: V-ATPas 83.4 3.9 8.5E-05 36.1 6.5 72 261-333 43-117 (119)
152 KOG4413 26S proteasome regulat 83.4 61 0.0013 33.7 23.1 120 379-513 310-438 (524)
153 PF05004 IFRD: Interferon-rela 82.9 63 0.0014 33.6 17.3 183 141-333 49-259 (309)
154 KOG2038 CAATT-binding transcri 82.7 1E+02 0.0022 35.7 18.8 73 133-208 302-374 (988)
155 KOG1820 Microtubule-associated 82.5 40 0.00086 39.8 16.0 164 41-205 267-444 (815)
156 KOG0567 HEAT repeat-containing 82.3 59 0.0013 32.8 22.1 124 21-164 4-129 (289)
157 KOG4653 Uncharacterized conser 81.5 65 0.0014 37.7 16.6 69 102-170 729-803 (982)
158 PF08167 RIX1: rRNA processing 81.4 7.4 0.00016 36.5 8.1 77 129-205 19-98 (165)
159 cd03569 VHS_Hrs_Vps27p VHS dom 80.9 14 0.00031 33.7 9.6 75 86-164 27-114 (142)
160 KOG2956 CLIP-associating prote 80.8 64 0.0014 35.2 15.4 139 135-289 329-476 (516)
161 PF08713 DNA_alkylation: DNA a 80.0 1.7 3.8E-05 42.2 3.5 69 102-170 122-190 (213)
162 KOG2973 Uncharacterized conser 78.8 85 0.0018 32.5 16.7 60 103-164 6-71 (353)
163 PF00790 VHS: VHS domain; Int 78.4 14 0.00029 33.6 8.6 94 71-164 13-118 (140)
164 PF12765 Cohesin_HEAT: HEAT re 78.4 2.4 5.1E-05 30.0 2.8 24 135-158 18-41 (42)
165 KOG4535 HEAT and armadillo rep 77.0 47 0.001 36.3 13.0 157 147-333 8-181 (728)
166 KOG1991 Nuclear transport rece 76.9 1.7E+02 0.0037 34.9 30.8 181 142-332 11-212 (1010)
167 KOG1525 Sister chromatid cohes 76.5 2.1E+02 0.0045 35.7 20.5 171 149-332 236-406 (1266)
168 PF12460 MMS19_C: RNAPII trans 75.9 1.2E+02 0.0027 32.8 27.7 171 370-547 186-389 (415)
169 KOG1992 Nuclear export recepto 75.2 1.8E+02 0.0038 34.2 26.8 148 134-290 5-159 (960)
170 PF12830 Nipped-B_C: Sister ch 75.0 80 0.0017 30.2 13.8 131 373-517 8-143 (187)
171 PF12074 DUF3554: Domain of un 74.9 69 0.0015 33.6 14.1 68 97-164 19-90 (339)
172 smart00288 VHS Domain present 74.9 46 0.001 29.9 11.0 88 79-166 16-113 (133)
173 PF14664 RICTOR_N: Rapamycin-i 74.9 14 0.0003 39.5 8.8 128 74-204 36-176 (371)
174 PF00514 Arm: Armadillo/beta-c 74.8 5.8 0.00013 27.5 4.1 28 136-163 13-40 (41)
175 PF11935 DUF3453: Domain of un 74.5 59 0.0013 32.4 12.7 146 143-310 1-161 (239)
176 cd06561 AlkD_like A new struct 74.3 40 0.00088 32.0 11.3 66 138-207 108-173 (197)
177 cd06561 AlkD_like A new struct 74.1 6.9 0.00015 37.4 5.8 68 103-170 108-176 (197)
178 cd03568 VHS_STAM VHS domain fa 73.9 31 0.00067 31.6 9.7 81 84-164 21-110 (144)
179 PF12530 DUF3730: Protein of u 72.4 1.1E+02 0.0023 30.5 16.4 159 110-286 11-185 (234)
180 KOG2011 Sister chromatid cohes 71.5 29 0.00063 41.6 10.9 109 94-202 276-397 (1048)
181 PF03224 V-ATPase_H_N: V-ATPas 71.4 54 0.0012 34.0 12.2 140 186-327 68-223 (312)
182 PF08569 Mo25: Mo25-like; Int 71.0 1.4E+02 0.0031 31.4 16.7 230 138-399 79-332 (335)
183 PF03224 V-ATPase_H_N: V-ATPas 70.7 1.4E+02 0.003 31.0 15.1 67 139-205 109-180 (312)
184 PF12231 Rif1_N: Rap1-interact 70.4 1.6E+02 0.0034 31.6 23.3 135 73-208 3-167 (372)
185 PF11864 DUF3384: Domain of un 69.5 1.8E+02 0.004 32.0 26.5 382 117-512 7-464 (464)
186 PF13001 Ecm29: Proteasome sta 69.0 17 0.00037 40.6 8.2 127 73-203 295-442 (501)
187 KOG1991 Nuclear transport rece 68.7 2.6E+02 0.0056 33.5 30.8 95 113-207 431-535 (1010)
188 KOG1967 DNA repair/transcripti 68.6 49 0.0011 38.9 11.5 218 68-335 745-986 (1030)
189 KOG1967 DNA repair/transcripti 68.2 2.6E+02 0.0057 33.3 17.7 59 348-406 227-288 (1030)
190 PF08568 Kinetochor_Ybp2: Unch 67.1 1.9E+02 0.0042 33.3 16.5 68 132-203 439-506 (633)
191 PF14500 MMS19_N: Dos2-interac 65.5 1.6E+02 0.0035 29.9 14.6 203 235-442 10-241 (262)
192 PF03130 HEAT_PBS: PBS lyase H 64.8 11 0.00024 23.7 3.4 25 116-140 1-25 (27)
193 PF05536 Neurochondrin: Neuroc 64.2 2.5E+02 0.0055 31.7 28.0 177 148-333 69-263 (543)
194 PF13251 DUF4042: Domain of un 63.2 89 0.0019 29.9 10.6 113 143-288 48-172 (182)
195 KOG1243 Protein kinase [Genera 62.8 33 0.00072 39.0 8.7 122 82-205 312-438 (690)
196 KOG4653 Uncharacterized conser 62.7 3.2E+02 0.0069 32.3 19.1 70 138-208 730-801 (982)
197 KOG1293 Proteins containing ar 62.6 2.8E+02 0.0061 31.7 30.8 106 408-513 418-532 (678)
198 KOG1943 Beta-tubulin folding c 62.2 3.6E+02 0.0077 32.7 26.2 242 71-332 349-612 (1133)
199 KOG0946 ER-Golgi vesicle-tethe 62.0 2.2E+02 0.0048 33.3 14.8 130 314-443 75-246 (970)
200 PF10274 ParcG: Parkin co-regu 62.0 17 0.00036 34.7 5.4 51 131-183 76-126 (183)
201 cd03568 VHS_STAM VHS domain fa 60.0 1E+02 0.0022 28.2 10.1 94 236-333 15-112 (144)
202 PF11865 DUF3385: Domain of un 59.5 1E+02 0.0023 28.6 10.3 34 298-331 124-157 (160)
203 PF09759 Atx10homo_assoc: Spin 59.3 36 0.00079 29.2 6.5 62 501-563 2-70 (102)
204 KOG1517 Guanine nucleotide bin 59.2 83 0.0018 37.7 11.1 121 43-163 572-731 (1387)
205 KOG2051 Nonsense-mediated mRNA 59.1 3.7E+02 0.008 32.5 16.3 104 463-568 520-630 (1128)
206 PF13981 SopA: SopA-like centr 58.6 1E+02 0.0022 28.0 9.6 54 499-552 67-124 (135)
207 KOG2005 26S proteasome regulat 58.5 50 0.0011 37.5 9.0 82 114-203 622-703 (878)
208 cd03572 ENTH_epsin_related ENT 58.3 14 0.0003 32.8 4.0 41 129-169 32-72 (122)
209 PF11707 Npa1: Ribosome 60S bi 58.1 2.4E+02 0.0051 29.6 14.0 233 79-344 42-312 (330)
210 KOG4500 Rho/Rac GTPase guanine 57.8 2.1E+02 0.0045 31.2 12.9 154 50-205 295-476 (604)
211 smart00567 EZ_HEAT E-Z type HE 57.0 15 0.00033 23.4 3.0 25 114-138 1-25 (30)
212 cd03567 VHS_GGA VHS domain fam 56.6 1.2E+02 0.0026 27.5 9.9 82 86-167 24-119 (139)
213 PF14676 FANCI_S2: FANCI solen 56.5 63 0.0014 30.1 8.2 73 470-544 81-153 (158)
214 KOG1992 Nuclear export recepto 56.4 4E+02 0.0086 31.5 23.8 70 97-166 453-529 (960)
215 cd00197 VHS_ENTH_ANTH VHS, ENT 56.2 80 0.0017 27.3 8.5 52 76-127 13-64 (115)
216 cd03567 VHS_GGA VHS domain fam 56.0 86 0.0019 28.5 8.8 77 307-406 43-120 (139)
217 PF04388 Hamartin: Hamartin pr 55.9 1.8E+02 0.004 33.7 13.6 138 374-522 5-148 (668)
218 PF00514 Arm: Armadillo/beta-c 54.2 18 0.00039 25.0 3.3 31 172-203 10-40 (41)
219 PF12530 DUF3730: Protein of u 53.6 2.4E+02 0.0051 28.0 16.7 169 384-553 12-190 (234)
220 PF01603 B56: Protein phosphat 52.0 3.2E+02 0.0068 29.7 14.0 73 133-205 131-205 (409)
221 KOG2213 Apoptosis inhibitor 5/ 51.4 1.1E+02 0.0025 32.6 9.8 122 319-440 41-178 (460)
222 PF14631 FancD2: Fanconi anaem 48.9 6.9E+02 0.015 32.0 19.9 65 224-291 192-256 (1426)
223 PF07749 ERp29: Endoplasmic re 47.9 1.2E+02 0.0026 25.5 7.9 57 380-438 12-73 (95)
224 PF08506 Cse1: Cse1; InterPro 47.9 71 0.0015 34.2 8.1 131 152-284 227-369 (370)
225 PF10274 ParcG: Parkin co-regu 47.5 86 0.0019 30.0 7.6 72 135-208 38-113 (183)
226 smart00185 ARM Armadillo/beta- 47.5 27 0.0006 23.4 3.4 27 136-162 13-39 (41)
227 KOG2149 Uncharacterized conser 46.3 1E+02 0.0022 33.0 8.6 63 140-203 63-127 (393)
228 cd00872 PI3Ka_I Phosphoinositi 45.9 2.7E+02 0.0057 26.3 11.7 112 24-145 2-115 (171)
229 PF08623 TIP120: TATA-binding 45.1 30 0.00066 32.6 4.2 59 147-207 39-97 (169)
230 PF11935 DUF3453: Domain of un 44.7 3.3E+02 0.0072 27.1 14.7 143 270-421 2-165 (239)
231 PF14631 FancD2: Fanconi anaem 44.1 3.6E+02 0.0079 34.3 14.3 191 130-332 430-641 (1426)
232 PF00790 VHS: VHS domain; Int 44.1 1.5E+02 0.0033 26.7 8.7 90 153-251 23-116 (140)
233 cd03569 VHS_Hrs_Vps27p VHS dom 44.0 1.7E+02 0.0038 26.6 8.9 34 307-340 46-79 (142)
234 KOG2973 Uncharacterized conser 43.7 90 0.002 32.3 7.5 63 139-205 7-72 (353)
235 KOG2274 Predicted importin 9 [ 43.6 6.4E+02 0.014 30.1 24.4 237 116-368 426-690 (1005)
236 KOG2199 Signal transducing ada 42.9 1.1E+02 0.0024 32.6 8.1 91 69-159 14-113 (462)
237 KOG0891 DNA-dependent protein 42.6 7.3E+02 0.016 33.4 16.8 285 105-405 450-766 (2341)
238 PF11701 UNC45-central: Myosin 42.5 50 0.0011 30.6 5.2 118 146-271 16-138 (157)
239 cd03572 ENTH_epsin_related ENT 40.9 1E+02 0.0023 27.3 6.7 49 242-290 19-67 (122)
240 KOG4535 HEAT and armadillo rep 40.4 25 0.00055 38.2 3.2 129 73-205 22-180 (728)
241 PLN03076 ARF guanine nucleotid 40.1 1.4E+02 0.003 38.7 10.0 139 175-316 1345-1516(1780)
242 cd08050 TAF6 TATA Binding Prot 40.1 2.8E+02 0.006 29.4 11.0 75 127-203 250-339 (343)
243 cd00870 PI3Ka_III Phosphoinosi 39.9 2.8E+02 0.006 26.0 9.8 93 42-142 28-120 (166)
244 PF05536 Neurochondrin: Neuroc 39.7 6.1E+02 0.013 28.7 16.4 93 309-401 12-127 (543)
245 PF08569 Mo25: Mo25-like; Int 39.4 4.8E+02 0.01 27.5 19.6 112 309-447 171-291 (335)
246 COG5215 KAP95 Karyopherin (imp 39.3 6.2E+02 0.013 28.7 35.4 448 94-568 54-591 (858)
247 PF07539 DRIM: Down-regulated 39.0 48 0.001 30.2 4.4 28 134-161 16-43 (141)
248 COG5231 VMA13 Vacuolar H+-ATPa 38.8 63 0.0014 33.5 5.5 72 260-332 355-429 (432)
249 PF14676 FANCI_S2: FANCI solen 37.9 1.8E+02 0.0039 27.1 8.1 51 154-207 37-87 (158)
250 KOG0392 SNF2 family DNA-depend 37.1 1.3E+02 0.0027 37.0 8.3 106 99-205 815-926 (1549)
251 PF08389 Xpo1: Exportin 1-like 37.0 2.9E+02 0.0063 24.3 11.3 51 149-203 2-53 (148)
252 PF09324 DUF1981: Domain of un 36.7 1.7E+02 0.0037 24.0 7.0 67 483-549 16-85 (86)
253 KOG2140 Uncharacterized conser 36.0 2.7E+02 0.0058 31.1 9.9 24 357-380 166-189 (739)
254 PF06685 DUF1186: Protein of u 35.8 4.7E+02 0.01 26.3 12.3 131 393-535 59-201 (249)
255 KOG2137 Protein kinase [Signal 35.5 1.5E+02 0.0032 34.2 8.3 51 236-288 441-494 (700)
256 KOG2025 Chromosome condensatio 35.4 7.8E+02 0.017 28.7 22.0 171 99-285 8-188 (892)
257 cd03561 VHS VHS domain family; 35.1 3.3E+02 0.0071 24.3 12.1 92 237-332 16-113 (133)
258 PF10521 DUF2454: Protein of u 34.7 1.2E+02 0.0026 31.0 7.1 40 130-169 114-153 (282)
259 PF14961 BROMI: Broad-minded p 33.4 1E+03 0.022 29.7 14.8 72 483-554 160-234 (1296)
260 PF12231 Rif1_N: Rap1-interact 32.9 6.3E+02 0.014 26.9 23.7 199 130-330 128-351 (372)
261 cd00871 PI4Ka Phosphoinositide 32.7 79 0.0017 30.0 4.9 59 91-153 66-124 (175)
262 PF13929 mRNA_stabil: mRNA sta 32.0 5.9E+02 0.013 26.3 11.3 181 42-246 27-225 (292)
263 PF08389 Xpo1: Exportin 1-like 31.9 1.7E+02 0.0036 26.0 6.9 110 58-183 21-135 (148)
264 KOG2085 Serine/threonine prote 30.8 4E+02 0.0088 28.8 10.0 79 469-548 283-366 (457)
265 PF12612 TFCD_C: Tubulin foldi 30.4 4.8E+02 0.01 24.8 10.4 129 130-271 2-137 (193)
266 PF04388 Hamartin: Hamartin pr 29.2 7E+02 0.015 29.0 12.8 100 100-208 39-144 (668)
267 KOG2759 Vacuolar H+-ATPase V1 29.2 7.7E+02 0.017 26.8 27.7 359 111-515 61-439 (442)
268 KOG4524 Uncharacterized conser 29.0 3.5E+02 0.0076 32.4 10.0 76 131-208 799-880 (1014)
269 KOG2286 Exocyst complex subuni 28.6 3.4E+02 0.0074 31.4 9.8 102 354-466 541-642 (667)
270 cd07064 AlkD_like_1 A new stru 28.5 1.1E+02 0.0023 29.9 5.3 131 69-209 52-184 (208)
271 cd00197 VHS_ENTH_ANTH VHS, ENT 28.4 1.3E+02 0.0029 25.9 5.4 36 306-341 41-76 (115)
272 PF00613 PI3Ka: Phosphoinositi 28.2 2.1E+02 0.0045 27.3 7.0 95 42-145 27-121 (184)
273 PRK12495 hypothetical protein; 27.9 62 0.0013 31.6 3.3 43 11-64 1-43 (226)
274 PF11701 UNC45-central: Myosin 27.8 4.8E+02 0.01 24.0 10.6 129 186-327 16-155 (157)
275 PF12397 U3snoRNP10: U3 small 26.9 4.2E+02 0.0091 22.9 10.9 68 97-166 3-76 (121)
276 PF09759 Atx10homo_assoc: Spin 26.8 1.7E+02 0.0038 25.0 5.6 57 389-445 2-66 (102)
277 cd00238 ERp29c ERp29 and ERp38 26.8 3.1E+02 0.0066 23.0 7.0 58 380-439 10-72 (93)
278 PF14668 RICTOR_V: Rapamycin-i 26.5 83 0.0018 25.2 3.3 54 152-205 4-59 (73)
279 KOG2153 Protein involved in th 26.4 1E+03 0.022 27.3 13.2 62 229-290 329-392 (704)
280 KOG2005 26S proteasome regulat 26.2 3.3E+02 0.0071 31.4 8.8 88 50-142 625-717 (878)
281 PF12031 DUF3518: Domain of un 26.1 2.1E+02 0.0046 28.7 6.6 72 351-422 137-229 (257)
282 PF07539 DRIM: Down-regulated 26.0 1E+02 0.0022 28.1 4.2 46 101-147 18-63 (141)
283 smart00288 VHS Domain present 25.8 2.4E+02 0.0052 25.2 6.7 33 308-340 43-75 (133)
284 COG5110 RPN1 26S proteasome re 25.7 2.5E+02 0.0055 31.4 7.7 99 99-202 595-703 (881)
285 smart00145 PI3Ka Phosphoinosit 24.9 3.8E+02 0.0082 25.6 8.1 96 42-145 25-120 (184)
286 PF12074 DUF3554: Domain of un 24.5 8.1E+02 0.018 25.5 17.1 87 116-204 3-90 (339)
287 COG5369 Uncharacterized conser 24.4 1.9E+02 0.0041 32.3 6.5 140 136-282 432-586 (743)
288 KOG2003 TPR repeat-containing 23.8 5.4E+02 0.012 28.2 9.5 67 385-455 637-704 (840)
289 PF03378 CAS_CSE1: CAS/CSE pro 23.1 1E+03 0.022 26.1 14.7 121 225-345 27-161 (435)
290 PF12825 DUF3818: Domain of un 22.8 9.2E+02 0.02 25.5 13.1 79 360-443 225-307 (341)
291 COG4912 Predicted DNA alkylati 22.8 1.2E+02 0.0025 29.9 4.2 50 119-168 138-187 (222)
292 smart00540 LEM in nuclear memb 22.4 2.1E+02 0.0045 20.6 4.3 36 21-56 7-42 (44)
293 PF12333 Ipi1_N: Rix1 complex 22.1 1.5E+02 0.0032 25.3 4.3 52 131-182 7-58 (102)
294 KOG1048 Neural adherens juncti 22.1 1.2E+03 0.026 27.3 12.5 124 114-261 517-649 (717)
295 PF04858 TH1: TH1 protein; In 21.6 1.2E+03 0.027 26.5 13.5 98 374-474 199-296 (584)
296 PF12397 U3snoRNP10: U3 small 21.3 5.4E+02 0.012 22.2 10.0 73 131-206 2-76 (121)
297 PF11865 DUF3385: Domain of un 21.3 2E+02 0.0043 26.7 5.4 34 93-129 7-40 (160)
298 cd07064 AlkD_like_1 A new stru 21.3 7.5E+02 0.016 23.9 14.1 20 177-197 118-137 (208)
299 PF10521 DUF2454: Protein of u 21.2 6.2E+02 0.013 25.7 9.6 38 298-335 115-152 (282)
300 cd03565 VHS_Tom1 VHS domain fa 20.5 6.4E+02 0.014 22.8 10.1 79 85-163 23-114 (141)
301 PF14961 BROMI: Broad-minded p 20.5 2.9E+02 0.0064 34.0 7.5 68 103-170 164-237 (1296)
302 cd00864 PI3Ka Phosphoinositide 20.4 6.7E+02 0.015 23.0 11.8 93 41-141 20-112 (152)
303 PF12783 Sec7_N: Guanine nucle 20.2 3.4E+02 0.0074 25.0 6.9 77 262-339 74-153 (168)
No 1
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=5.9e-114 Score=966.57 Aligned_cols=574 Identities=29% Similarity=0.472 Sum_probs=527.3
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhh
Q 007343 11 PSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNY 90 (607)
Q Consensus 11 ~~~~~~~~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~ 90 (607)
+..|...+|||++|||++|++ .+.++|++++||+|++|++|+|+|++|++|+++++|+|+++|||||+|+.+|
T Consensus 23 ~~~f~~~~kge~~ELr~~L~s-------~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~y 95 (746)
T PTZ00429 23 SKYFAQTRRGEGAELQNDLNG-------TDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLST 95 (746)
T ss_pred cccccccccchHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 445666689999999999987 4557899999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 91 ~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
++.+||+++|+||+|+||++|+||++||+|||+||+|+.+++++++.++|++++.|++|||||+|++|++|+|+.+|+.+
T Consensus 96 a~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv 175 (746)
T PTZ00429 96 ARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF 175 (746)
T ss_pred cccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 007343 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (607)
Q Consensus 171 ~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~ 250 (607)
.+.+|.+.|.++ +.|+|++|+++|+.+|.+|...+|+ .+. +.++.+++|++.+++++||+|+.+|++|.+
T Consensus 176 ~~~~~~~~L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~--------~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 176 YQQDFKKDLVEL-LNDNNPVVASNAAAIVCEVNDYGSE--------KIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred cccchHHHHHHH-hcCCCccHHHHHHHHHHHHHHhCch--------hhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 778999999998 5999999999999999999876653 122 234579999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCc-chhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Q 007343 251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (607)
Q Consensus 251 ~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~-~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l 329 (607)
|.|.+.++++++++.+.++|+|+|+||+++|+|+++++.... ++...+++.|++.+|++|+ ++++|+||++|++|..+
T Consensus 246 y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 246 QRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS-RRDAETQYIVCKNIHAL 324 (746)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh-CCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998653 3455678889999999886 47899999999999999
Q ss_pred HhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh-H
Q 007343 330 VMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-N 408 (607)
Q Consensus 330 ~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-~ 408 (607)
++++|.+|.+|++.|||+++||.|||.+||+||+.|||++|+..|++||.+|+++.|.+|++++|++||+||.|+|+. .
T Consensus 325 ~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~ 404 (746)
T PTZ00429 325 LVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAP 404 (746)
T ss_pred HHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999984 7
Q ss_pred HHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHh-hhhccCCchHHHHHHHHHHhcccCCCCChHHHHH
Q 007343 409 AIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS-ISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILE 487 (607)
Q Consensus 409 ~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~-l~~~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~ 487 (607)
||+++|+++++.+++++ .|++.++++|+|+||+.. .+..+.. +..+.+++|++|++++||+||||+.+++++++++
T Consensus 405 ~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~ 481 (746)
T PTZ00429 405 DCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQ 481 (746)
T ss_pred HHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHH
Confidence 99999999999877764 588999999999999853 2222222 2136889999999999999999999999999999
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhc-CCChhHHhHHHHHHHHccCCH--HHHhhhcCCC
Q 007343 488 SLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA-DFHQDVHDRALFYHRLLQYNV--SVAERVVNPP 564 (607)
Q Consensus 488 ~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~-d~~~dvrdRA~~y~~Ll~~~~--~~~~~i~~~~ 564 (607)
.++++|.+|+ ++||+++||+++|+|+++|++++++++++|+.+++ +.|+||||||++|||||+.++ +.|++|++++
T Consensus 482 ~~i~~f~~E~-~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv~~~ 560 (746)
T PTZ00429 482 RFIDTIMEHE-QRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVVHGQ 560 (746)
T ss_pred HHHhhhccCC-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHHcCC
Confidence 9999999999 99999999999999999999999999999998865 589999999999999999874 6789999999
Q ss_pred CCCcccccccCChHHHHHHHhhccchhhhhcccchhhccCCC
Q 007343 565 KQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKVTTMSKIGFH 606 (607)
Q Consensus 565 ~p~~~~~~~~~~~~~~~~l~~~~~tls~iy~~~~~~~~~~~~ 606 (607)
+||++...+..+++++++|+.+|||||+||+||++.|+.+.|
T Consensus 561 ~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~ 602 (746)
T PTZ00429 561 MVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYG 602 (746)
T ss_pred CCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchh
Confidence 999876555567779999999999999999999999999875
No 2
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-110 Score=899.13 Aligned_cols=578 Identities=41% Similarity=0.673 Sum_probs=548.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhh
Q 007343 11 PSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNY 90 (607)
Q Consensus 11 ~~~~~~~~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~ 90 (607)
.+-|...++||+.|+|++|.+ ...++|++++||+|+.|+.|+|||.+|++|++++++.|+++|||+|||+.+|
T Consensus 4 ~k~F~~~~k~ei~elks~l~s-------~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nY 76 (734)
T KOG1061|consen 4 SKYFSTDKKGEIPELKSQLNS-------QSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNY 76 (734)
T ss_pred ccccCcchhhhchHHHHHhhh-------hhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHh
Confidence 445677779999999999965 3347899999999999999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 91 ~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
+..+|+++++++|++.||+.|+||.+|++|+|+||+++.+.+.+++..++.+++.|.+|||||+|+.|+.|+|+.+|+.+
T Consensus 77 a~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~ 156 (734)
T KOG1061|consen 77 AKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV 156 (734)
T ss_pred hccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 007343 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (607)
Q Consensus 171 ~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~ 250 (607)
.+.++++.|++++ .|+||.|++||+++|.+|...+++.. ...+.+++++++++.+++++||+|+.+|+.++.
T Consensus 157 ~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~~~~~-------~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~ 228 (734)
T KOG1061|consen 157 EDSGLVDALKDLL-SDSNPMVVANALAALSEIHESHPSVN-------LLELNPQLINKLLEALNECTEWGQIFILDCLAE 228 (734)
T ss_pred cccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhCCCCC-------cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 9999999999995 89999999999999999998876421 123567789999999999999999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Q 007343 251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (607)
Q Consensus 251 ~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~ 330 (607)
|.|.++.+++++++.+.++|+|+|++|++.+++++++.....+++...+++|+.+||.+++++ .++++|++|+++..++
T Consensus 229 y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~-~~e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 229 YVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS-ESEIQYVALRNINLIL 307 (734)
T ss_pred cCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecc-cchhhHHHHhhHHHHH
Confidence 999999999999999999999999999999999999998877777778899999999999975 4599999999999999
Q ss_pred hhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHH
Q 007343 331 MRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAI 410 (607)
Q Consensus 331 ~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~ 410 (607)
++.|++|..++++|||++|||.|||..|||++..++|..|+.+++.||.+|+++.|.+|++++|++||+||.|+++.+.|
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~c 387 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDC 387 (734)
T ss_pred HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887789
Q ss_pred HHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCChHHHHHHHH
Q 007343 411 VDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLT 490 (607)
Q Consensus 411 v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~~l~ 490 (607)
|++++++++.+.+|+++|++.++++++|+||+..+..+..++.. .+++++|++|++++||+|||++.++|++++|+.|+
T Consensus 388 v~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~-~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~ 466 (734)
T KOG1061|consen 388 VSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCEN-LDSLQEPEAKAALIWILGEYAERIENALELLESFL 466 (734)
T ss_pred HHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhccc-ccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHH
Confidence 99999999999999999999999999999999887655555544 48999999999999999999999999999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCC-ChhHHhHHHHHHHHccCCHHHHhhhcCCCCCCcc
Q 007343 491 ENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADF-HQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVS 569 (607)
Q Consensus 491 ~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~-~~dvrdRA~~y~~Ll~~~~~~~~~i~~~~~p~~~ 569 (607)
++|.+|+ .+||+++|||++|+|+++|.+.|++++.+|..|+.++ ++|+||||++|||+|+.++..|++++++++|.++
T Consensus 467 en~~dE~-~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~~~a~~v~~~~kP~is 545 (734)
T KOG1061|consen 467 ENFKDET-AEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSEDPLIAKDVVLAEKPLIS 545 (734)
T ss_pred hhcccch-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhcCHHHHHHHHhcCCCccc
Confidence 9999999 9999999999999999999999999999999999885 7999999999999999999999999999999999
Q ss_pred cccccCChHHHHHHHhhccchhhhhcccchhhccCCC
Q 007343 570 VFADTQSSEIKDRIFDEFNSLSVVYQKVTTMSKIGFH 606 (607)
Q Consensus 570 ~~~~~~~~~~~~~l~~~~~tls~iy~~~~~~~~~~~~ 606 (607)
...+..++.++|+|+.+|||+|+|||||+++|+.|.|
T Consensus 546 ~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~f~~~~~ 582 (734)
T KOG1061|consen 546 EETDSLDPTLLEELLCDIGTLSSVYHKPPSAFVEGQK 582 (734)
T ss_pred cCCCCCCchHHHHHHHhhccccceeecChHHhcCcCc
Confidence 9988899999999999999999999999999999987
No 3
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-88 Score=720.75 Aligned_cols=543 Identities=30% Similarity=0.476 Sum_probs=494.1
Q ss_pred CcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHH
Q 007343 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL 99 (607)
Q Consensus 20 ~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~ 99 (607)
-+=.+|++.|.+ ..+..|.+|||++|++|+.|.|+|.+||+|+|+++|+|.++|||+|+|+.+|++++||+++
T Consensus 35 ~~~~dL~~lLdS-------nkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL 107 (968)
T KOG1060|consen 35 IRHDDLKQLLDS-------NKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL 107 (968)
T ss_pred CChHHHHHHHhc-------cccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee
Confidence 445678888877 2236799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHH
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L 179 (607)
|.||||||+|.|||+.+||.|||+|++|+.+-+++.++-+|+++..|++|||||.||.|+.|+|..+|+.- +.+.+.+
T Consensus 108 LSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k--~qL~e~I 185 (968)
T KOG1060|consen 108 LSINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK--DQLEEVI 185 (968)
T ss_pred eeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH--HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 4788888
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC----C
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL----D 255 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~----~ 255 (607)
+.+ +.|.+|.|+++|+.++.|+ ||++.+++|+ .+++||+.+.+.++|+|+.++.+|.+|++. .
T Consensus 186 ~~L-LaD~splVvgsAv~AF~ev-----------CPerldLIHk-nyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P 252 (968)
T KOG1060|consen 186 KKL-LADRSPLVVGSAVMAFEEV-----------CPERLDLIHK-NYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDP 252 (968)
T ss_pred HHH-hcCCCCcchhHHHHHHHHh-----------chhHHHHhhH-HHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCc
Confidence 887 5999999999999999987 4567889988 599999999999999999999999999621 0
Q ss_pred -----------------------------hhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHH
Q 007343 256 -----------------------------SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAP 306 (607)
Q Consensus 256 -----------------------------~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~ 306 (607)
..+..-+++-..++|+|.|++|++++++++.++.+... ..+++.+
T Consensus 253 ~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~------~~~i~ka 326 (968)
T KOG1060|consen 253 TVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ------VTKIAKA 326 (968)
T ss_pred cccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH------HHHHHHH
Confidence 12345577888999999999999999999999987531 3467889
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCC
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVD 386 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d 386 (607)
|+++|. +.+++||++|++|..+..+.|.+|.+|++.||++..||+.+|..||+||..|+|+.|+..|+.||..|+.+.|
T Consensus 327 LvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d 405 (968)
T KOG1060|consen 327 LVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSD 405 (968)
T ss_pred HHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc
Confidence 999997 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcccCCh-HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHH
Q 007343 387 IPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAK 465 (607)
Q Consensus 387 ~~~~~~~i~~I~~la~k~~~~-~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~ 465 (607)
.+|+..+|++||+||.+.-.+ .-|+++|++++++..+.|+.|.+.+|+.++++.|..+..++.-+.+++ +++..|.||
T Consensus 406 ~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll-dti~vp~AR 484 (968)
T KOG1060|consen 406 RSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL-DTILVPAAR 484 (968)
T ss_pred hhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh-hhhhhhhhh
Confidence 999999999999999987665 459999999999999999999999999999999998877777777775 889999999
Q ss_pred HHHHHHHhcccCCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhHHhHHH
Q 007343 466 AALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRAL 544 (607)
Q Consensus 466 ~~~iwilGEy~~~i~~-~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dvrdRA~ 544 (607)
++++|++|||++.++. +|+++|.++++|..|. ++||+|+|...+|+|...+.+.+.+++++|+.+.+|.+.|+||||+
T Consensus 485 A~IiWLige~~e~vpri~PDVLR~laksFs~E~-~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaR 563 (968)
T KOG1060|consen 485 AGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEG-DEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRAR 563 (968)
T ss_pred ceeeeeehhhhhhcchhchHHHHHHHHhhcccc-chhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHH
Confidence 9999999999999986 8999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCH---HHHhhhcCCCCCCcccccccCChHHHHHHHhhccchhhhhcccch
Q 007343 545 FYHRLLQYNV---SVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKVTT 599 (607)
Q Consensus 545 ~y~~Ll~~~~---~~~~~i~~~~~p~~~~~~~~~~~~~~~~l~~~~~tls~iy~~~~~ 599 (607)
|+..|+.... +-+++++++.+|..- .++.+.++ +-.+||+|.+...|+-
T Consensus 564 F~r~l~~~~~~Ls~h~~ei~l~~Kpa~~-----~es~f~~~-~~~~gslS~lLn~~a~ 615 (968)
T KOG1060|consen 564 FLRQLISPLEALSKHAREIFLASKPAPV-----LESSFKDR-HYQLGSLSLLLNAPAP 615 (968)
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCcc-----CcccccCC-CcccchHHHHhcCcCc
Confidence 9999999754 568899999987643 23334444 5678999999988765
No 4
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=6.4e-79 Score=679.89 Aligned_cols=509 Identities=34% Similarity=0.540 Sum_probs=447.3
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHH
Q 007343 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL 100 (607)
Q Consensus 21 e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L 100 (607)
..+|+++-+.+. . .+.++|+++++|+++++++|+|++++|++|+++++|+|++.||+||+|++.+++.+||+++|
T Consensus 5 ~~~el~~~~~~~----~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 5 ISQELAKILNSF----K-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHHHHCS----S-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHHHHhcC----C-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH
Confidence 344555555542 1 24578999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHH
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~ 180 (607)
++|+++||++|+||++||+|||++|+++++++++.+.+.|.+++.|++|||||+|++|+.++|+.+|+.+... |.+.+.
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~ 158 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLK 158 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998543 899999
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH-
Q 007343 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI- 259 (607)
Q Consensus 181 ~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~- 259 (607)
++| .|+|++|+.+|+.++.++ +.+++. ...++ ++.+..|++.++.++||+|+.++++|..|.+.++.+.
T Consensus 159 ~lL-~d~~~~V~~~a~~~l~~i-~~~~~~-------~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~ 228 (526)
T PF01602_consen 159 QLL-SDKDPSVVSAALSLLSEI-KCNDDS-------YKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDAD 228 (526)
T ss_dssp HHT-THSSHHHHHHHHHHHHHH-HCTHHH-------HTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHH
T ss_pred hhc-cCCcchhHHHHHHHHHHH-ccCcch-------hhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhh
Confidence 985 999999999999999999 322210 00222 3467777777799999999999999999999999888
Q ss_pred -HHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC-Cccc
Q 007343 260 -FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIF 337 (607)
Q Consensus 260 -~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~-p~~~ 337 (607)
..+++.+.+.+++.+++|+++|+++++++.+..+ ++..+.++|++|++++++|+||++|+.+..++..+ |.++
T Consensus 229 ~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~ 303 (526)
T PF01602_consen 229 KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF 303 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh
Confidence 7899999999999999999999999999887633 45677889999999999999999999999999999 5566
Q ss_pred ccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHcccCC-hHHHHHHHH
Q 007343 338 ASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV-DIPIARESIRAVGKIALQQYD-VNAIVDRLL 415 (607)
Q Consensus 338 ~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~~~-~~~~v~~ll 415 (607)
..+...|+++++||.+||.+||++|+.++|++|+..|++||..|+.+. |++++++++++|+.+|.++++ ..||+++++
T Consensus 304 ~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~ 383 (526)
T PF01602_consen 304 NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLL 383 (526)
T ss_dssp THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHH
T ss_pred hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHH
Confidence 667777888889999999999999999999999999999999999665 899999999999999999986 589999999
Q ss_pred HhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCC---hHHHHHHHHHh
Q 007343 416 QFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTEN 492 (607)
Q Consensus 416 ~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~---~~~~l~~l~~~ 492 (607)
+++..+++++..++|..++++++++|+.++.++..+.+.+ +++.+++++++++|++||||+..++ ++++++.+.++
T Consensus 384 ~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l-~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~ 462 (526)
T PF01602_consen 384 KLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELL-EDISSPEALAAAIWILGEYGELIENTESAPDILRSLIEN 462 (526)
T ss_dssp HHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHH-TSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHH
T ss_pred HhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHH-HHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHh
Confidence 9999999999999999999999999999887766666664 5688999999999999999999998 99999999999
Q ss_pred hhcCCcHHHHHHHHHHHHHHhhcCCc-hh-HHHHHHHHHHhhc-CCChhHHhHHHHHHHHccC
Q 007343 493 WEEEPSAEVRLHLLTAVMKCFFKRPP-ET-QKVLGAALAAGLA-DFHQDVHDRALFYHRLLQY 552 (607)
Q Consensus 493 f~~e~~~~vk~~iLta~~Kl~~~~p~-~~-~~~~~~~l~~~~~-d~~~dvrdRA~~y~~Ll~~ 552 (607)
|..++ +.||.++||+++|++.++|+ +. +.+++.+.+.+++ |.|+||||||+||++||+.
T Consensus 463 ~~~~~-~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 463 FIEES-PEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HTTSH-HHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred hcccc-HHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 99998 99999999999999999985 34 3566666666664 6799999999999999975
No 5
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-78 Score=634.16 Aligned_cols=544 Identities=19% Similarity=0.243 Sum_probs=465.0
Q ss_pred CcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHH
Q 007343 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL 99 (607)
Q Consensus 20 ~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~ 99 (607)
.|+++||++|++. ++-+ -.+||++++|++|++++|+|++++.++.+++++++.|.+|.+||++++.+.++|+|+.-
T Consensus 35 kELanIRskFk~~--K~L~--gYqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~k 110 (938)
T KOG1077|consen 35 KELANIRSKFKGD--KTLD--GYQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMK 110 (938)
T ss_pred HHHHHHHHHhccc--cccc--hhhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHH
Confidence 5789999999962 1222 36899999999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCC--ChHHHHHHHHHHHHHHhhCCCCcCCCCchH
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN--NSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~--~~~VRK~A~lal~kl~~~~p~~~~~~~~~~ 177 (607)
+++|+++||+.+.||...+|||.++|+++..++++.+.++|-++|.++ .+||||+||+|++++|+.+||.+...+|.+
T Consensus 111 lvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~ 190 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQ 190 (938)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHH
Confidence 999999999999999999999999999999999999999999988654 589999999999999999999997779999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc-------------CCCChhHHHHH
Q 007343 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-------------KEFSEWAQCLV 244 (607)
Q Consensus 178 ~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l-------------~~~~~w~qi~i 244 (607)
++..+ ++|++-+|+.++..++.-+.+++|+-.. .| +. ..+.+|.+.. ..++||+|+++
T Consensus 191 riv~L-L~D~~~gv~ta~~sLi~~lvk~~p~~yk-~~------~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl 261 (938)
T KOG1077|consen 191 RIVHL-LDDQHMGVVTAATSLIEALVKKNPESYK-TC------LP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL 261 (938)
T ss_pred HHHHH-hCccccceeeehHHHHHHHHHcCCHHHh-hh------HH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence 99998 5999999999999999999998875221 11 11 1344443322 13799999999
Q ss_pred HHHHhccC-CCChhHHHHHHHHHHHHhc------------cC--chHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHH
Q 007343 245 LELVAKYV-PLDSNEIFDIMNLLEDRLQ------------HA--NGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLT 309 (607)
Q Consensus 245 L~lL~~~~-~~~~~~~~~il~~l~~~L~------------~~--n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ 309 (607)
+++|..|. |+|+.....+.+.+..+|. ++ .+||+|||++++++++.+. +++.+..+.|+.
T Consensus 262 ~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~-----~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 262 LRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP-----ELLSRAVNQLGQ 336 (938)
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHH
Confidence 99999995 3455555555666655542 23 3699999999999998753 345667778899
Q ss_pred HhccCCchhHHHHHHHHHHHHhhCCc--ccccccceeee--ccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcC
Q 007343 310 LVSSGSPEQSYAVLSHLHILVMRAPF--IFASDYKHFYC--QYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV 385 (607)
Q Consensus 310 ll~s~~~ni~y~~L~~i~~l~~~~p~--~~~~~~~~f~~--~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~ 385 (607)
|++++++|+||++|+.+..++...+. .+..|.+..+- +...|.+||++++|+||.||+.+|+++||+||++|+.++
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tA 416 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETA 416 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhc
Confidence 99999999999999999999988654 46667664442 335568899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHcccCC-hHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhh-hccCCchH
Q 007343 386 DIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS-SQNVQEPK 463 (607)
Q Consensus 386 d~~~~~~~i~~I~~la~k~~~-~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~-~~~~~~~~ 463 (607)
|..++++++.+++.+|+||+. .+||||++++|++.+|+++++|+|..+.+|+.++++++.++..-+.+.+ ...+++.-
T Consensus 417 d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~m 496 (938)
T KOG1077|consen 417 DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENM 496 (938)
T ss_pred chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999964 7999999999999999999999999999999999999998665555443 34555555
Q ss_pred HHHHHHHHHhcccCCCCC-----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChh
Q 007343 464 AKAALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQD 538 (607)
Q Consensus 464 ~~~~~iwilGEy~~~i~~-----~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~d 538 (607)
+|+ .+|++||||+++.+ +...+..+.++|...+ +.+|+.+||+.+|++..+| |.++.++.+|+...+..|+|
T Consensus 497 VKv-ggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s-~~tr~lLLtTyiKl~nl~P-Ei~~~v~~vFq~~~n~~D~E 573 (938)
T KOG1077|consen 497 VKV-GGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCS-PVTRALLLTTYIKLINLFP-EIKSNVQKVFQLYSNLIDVE 573 (938)
T ss_pred HHh-hhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHhhCh-hhhHHHHHHHHhhcccCCHH
Confidence 665 59999999999975 6789999999999999 9999999999999999998 79999999999999999999
Q ss_pred HHhHHHHHHHHccCCHHHHhhhcCCCCCCcccccccCChHHHHHHHhhcc
Q 007343 539 VHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFN 588 (607)
Q Consensus 539 vrdRA~~y~~Ll~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~l~~~~~ 588 (607)
+||||++|.+|.+.....+-++++++||||. +.++.++.+|...=+
T Consensus 574 lQqRa~EYLql~k~as~dvL~~vleeMPpF~----er~ssll~kl~~~~~ 619 (938)
T KOG1077|consen 574 LQQRAVEYLQLSKLASTDVLQTVLEEMPPFP----ERESSLLKKLKKKKP 619 (938)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHhhCCCCc----cccchHHHHhhccCC
Confidence 9999999999999864456678899999996 367778888875434
No 6
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-74 Score=618.54 Aligned_cols=529 Identities=16% Similarity=0.210 Sum_probs=444.1
Q ss_pred CCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHH
Q 007343 19 KGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA 98 (607)
Q Consensus 19 ~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~ 98 (607)
+.|++.||..+++.. .+..+|++.+.|++|++|+|||.+++.++.+|+++|++|..||+|||+++.++++++|+.
T Consensus 31 ~kE~a~IRa~ire~~-----~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvl 105 (866)
T KOG1062|consen 31 QKECAAIRASIREPT-----NDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLL 105 (866)
T ss_pred HHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHH
Confidence 367888999998733 445789999999999999999999888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHH
Q 007343 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT 178 (607)
Q Consensus 99 ~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~ 178 (607)
+|++|+++|||+|+|.+++|+||.++|+|..+||++.+.|.|.+++++++|||||||++|..|++++.|+.+ +.|++.
T Consensus 106 lLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~--e~f~~~ 183 (866)
T KOG1062|consen 106 LLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV--EHFVIA 183 (866)
T ss_pred HHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--HHhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 579999
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC------------CCChhHHHHHHH
Q 007343 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK------------EFSEWAQCLVLE 246 (607)
Q Consensus 179 L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~------------~~~~w~qi~iL~ 246 (607)
-.++ ++|.|+||+.+++..+.++++.+|+.. .. +.. +.++ +.++++++. .++||+|++||+
T Consensus 184 ~~~l-L~ek~hGVL~~~l~l~~e~c~~~~~~l-~~---fr~-l~~~-lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 184 FRKL-LCEKHHGVLIAGLHLITELCKISPDAL-SY---FRD-LVPS-LVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred HHHH-HhhcCCceeeeHHHHHHHHHhcCHHHH-HH---HHH-HHHH-HHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 9998 499999999999999999998876421 11 111 1122 334444432 379999999999
Q ss_pred HHhccCCCChhHHHHHHHHHHHHhc------cCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHH
Q 007343 247 LVAKYVPLDSNEIFDIMNLLEDRLQ------HANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSY 320 (607)
Q Consensus 247 lL~~~~~~~~~~~~~il~~l~~~L~------~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y 320 (607)
+|+.+...+++....+-+.+..... +..+||+|||+++|+.+.++.+ +.....++|.+||.++|.|+||
T Consensus 257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~-----LrvlainiLgkFL~n~d~NirY 331 (866)
T KOG1062|consen 257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSG-----LRVLAINILGKFLLNRDNNIRY 331 (866)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCch-----HHHHHHHHHHHHhcCCccceee
Confidence 9999988776544433344444443 3458999999999999987643 2344678899999999999999
Q ss_pred HHHHHHHHHHhhCCcccccccc-eeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 007343 321 AVLSHLHILVMRAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGK 399 (607)
Q Consensus 321 ~~L~~i~~l~~~~p~~~~~~~~-~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~ 399 (607)
+||..+.+.++..|..++.|.. +.-|..+.|.+||+++||++|+|+|++|+..+++||++|+...|++|+.+++.+|..
T Consensus 332 vaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~ 411 (866)
T KOG1062|consen 332 VALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIAE 411 (866)
T ss_pred eehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999875 667888777889999999999999999999999999999999999999999999999
Q ss_pred HHcccC-ChHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhC-CCCchhHHH-HHHhhhh---ccCCchHHHHHHHHHHh
Q 007343 400 IALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWSHDCIA-VVGSISS---QNVQEPKAKAALIWMLG 473 (607)
Q Consensus 400 la~k~~-~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~-p~~~~~~~~-~l~~l~~---~~~~~~~~~~~~iwilG 473 (607)
+|++|. +..|++|+++..+..+|++|..++|..+..++.+- ++.+++... +...+.. -.+.++....+++|+||
T Consensus 412 laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IG 491 (866)
T KOG1062|consen 412 LAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIG 491 (866)
T ss_pred HHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhh
Confidence 999995 56899999999999999999999999887777776 777776432 1212211 13566667889999999
Q ss_pred cccCCCCC-----------hHH---HHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhH
Q 007343 474 EYSQDMQD-----------APY---ILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDV 539 (607)
Q Consensus 474 Ey~~~i~~-----------~~~---~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dv 539 (607)
|||++.-+ ..+ +++.++.++.. +..+|.++|+|++|+..++++. ...++.++..++.+.|.|+
T Consensus 492 EYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s--~~~tk~yal~Al~KLSsr~~s~-~~ri~~lI~~~~~s~~~el 568 (866)
T KOG1062|consen 492 EYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSS--DSTTKGYALTALLKLSSRFHSS-SERIKQLISSYKSSLDTEL 568 (866)
T ss_pred hhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHHhcccccHHH
Confidence 99966533 234 45555555443 2889999999999999999854 4568888888898999999
Q ss_pred HhHHHHHHHHccCCHHHHhhhcCCCCCCccc
Q 007343 540 HDRALFYHRLLQYNVSVAERVVNPPKQAVSV 570 (607)
Q Consensus 540 rdRA~~y~~Ll~~~~~~~~~i~~~~~p~~~~ 570 (607)
||||++|..|+..+ ..+++.+++.||..+.
T Consensus 569 QQRa~E~~~l~~~~-~~lr~siLe~mp~~e~ 598 (866)
T KOG1062|consen 569 QQRAVEYNALFAKD-KHLRKSILERMPSCED 598 (866)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhcccCccccc
Confidence 99999999999765 5666788889988765
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=7.2e-72 Score=612.92 Aligned_cols=574 Identities=29% Similarity=0.448 Sum_probs=485.2
Q ss_pred CCCCCCCCCCC-----CCcHHHHHHH-HHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHH
Q 007343 8 HRSPSPSQPSG-----KGEVSDLKSQ-LRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKK 81 (607)
Q Consensus 8 ~~~~~~~~~~~-----~~e~~elr~~-l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Kr 81 (607)
||+||.++... ..++++++.. +.+ +++++|+++||++|+.|+.|+|||.+|++|+|.++|.|.++||
T Consensus 1 ~~~~S~~~~~~~~~~~~~~~~~~~sg~l~s-------~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKr 73 (757)
T COG5096 1 MRIMSAFKDSIRKARNADSVAALSSGRLES-------SNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKR 73 (757)
T ss_pred CcchhHHHHHHhhhccchHHhhhccccccc-------cChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHH
Confidence 45555554433 3456666665 555 5568999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHH
Q 007343 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLK 161 (607)
Q Consensus 82 l~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~k 161 (607)
|+|+||.+|++.+|++++|++|+++||++|+||++||+|||+||.++.++++++++++|++++.|++|||||+|++|+.+
T Consensus 74 L~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~k 153 (757)
T COG5096 74 LLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAK 153 (757)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC-----CC
Q 007343 162 LYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK-----EF 236 (607)
Q Consensus 162 l~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~-----~~ 236 (607)
+|+.+|+.+.+.+..+.+..+ ..|+||.|+++|+.+|.+|...... ... .. +...+.++. .+
T Consensus 154 ly~ld~~l~~~~g~~~~l~~l-~~D~dP~Vi~nAl~sl~~i~~e~a~----------~~~-~~-~~~~i~~l~~~~~~~~ 220 (757)
T COG5096 154 LYRLDKDLYHELGLIDILKEL-VADSDPIVIANALASLAEIDPELAH----------GYS-LE-VILRIPQLDLLSLSVS 220 (757)
T ss_pred HHhcCHhhhhcccHHHHHHHH-hhCCCchHHHHHHHHHHHhchhhhh----------hHH-HH-HHHHhhhccchhhhhh
Confidence 999999999777788888887 5999999999999999999654110 000 01 111222221 23
Q ss_pred ChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCc
Q 007343 237 SEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSP 316 (607)
Q Consensus 237 ~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ 316 (607)
.+|.+..+++.|..+.|..++++..+.+.+.+.+++.|++|+..+++.++.+....++. .+..+..++|.+++..+++
T Consensus 221 ~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~--~~~~~~~~~l~~Ll~~~~~ 298 (757)
T COG5096 221 TEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSN--NLFLISSPPLVTLLAKPES 298 (757)
T ss_pred HHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccc--cHHHhhccHHHHHHcCCHH
Confidence 49999999999999999999999999999999999999999999999999988765543 2556778888888876658
Q ss_pred hhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhc--CCHHHHHHHH
Q 007343 317 EQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAAN--VDIPIARESI 394 (607)
Q Consensus 317 ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~--~d~~~~~~~i 394 (607)
.++|+...++..++...|..+....+.|+|.++||.|++..|+++++.+++.+|..+++.|+.+|+.+ .|++++++++
T Consensus 299 ~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~i 378 (757)
T COG5096 299 LIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAI 378 (757)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHcccCC-hHHHHHHHHHhhh---hcCchhhHHH-----HHHHH---HHHHhCCCC-chhHHHHHHhhhhccCC-
Q 007343 395 RAVGKIALQQYD-VNAIVDRLLQFLE---MEKDYVTAEA-----LVLVK---DLLRKYPQW-SHDCIAVVGSISSQNVQ- 460 (607)
Q Consensus 395 ~~I~~la~k~~~-~~~~v~~ll~ll~---~~~~~v~~e~-----i~~i~---~i~~~~p~~-~~~~~~~l~~l~~~~~~- 460 (607)
++||.++.+.++ ...|++.+++++. ..++|+.+|+ |.+++ ++++.+|+- .+.....+..+ .+.++
T Consensus 379 k~lgd~~sk~~s~~~~~I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~-~e~l~~ 457 (757)
T COG5096 379 KALGDLASKAESSVNDCISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYAL-EETLEL 457 (757)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHH-HHHhhc
Confidence 999999999865 4679999999999 8899999998 66666 788888876 22222223332 24444
Q ss_pred ---chHHHHHH-----HHHHhcccCCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHH----HHHHH
Q 007343 461 ---EPKAKAAL-----IWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQK----VLGAA 527 (607)
Q Consensus 461 ---~~~~~~~~-----iwilGEy~~~i~~-~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~----~~~~~ 527 (607)
+|+++.++ +|++|||++.+++ .|+.++.++.+|..|+ .+||.+|+++.+|++...+...++ +.+.+
T Consensus 458 ~~~~P~~k~~~~~~~~~wl~ge~~~~i~r~~~~~l~~~~~~~~~E~-levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v 536 (757)
T COG5096 458 QSREPRAKSVTDKYLGAWLLGEFSDIIPRLEPELLRIAISNFVDET-LEVQYTILMSSVKLIANSIRKAKQCNSELDQDV 536 (757)
T ss_pred cccCcHHHHHHhhhhHHHhHHHHHHHHhhhhHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHhCcHhhhhccchhccHH
Confidence 79999988 9999999999987 5699999999999999 999999999999999998865444 56688
Q ss_pred HHHhhcC-CChhHHhHHHHHHHHccC-CHHHHhhhcCCCCCCcccc---ccc----CChHHHHHHHhhc--cchhhhhcc
Q 007343 528 LAAGLAD-FHQDVHDRALFYHRLLQY-NVSVAERVVNPPKQAVSVF---ADT----QSSEIKDRIFDEF--NSLSVVYQK 596 (607)
Q Consensus 528 l~~~~~d-~~~dvrdRA~~y~~Ll~~-~~~~~~~i~~~~~p~~~~~---~~~----~~~~~~~~l~~~~--~tls~iy~~ 596 (607)
+..|... .++|+||||.+||++++. .++.+..+++.+.|..+++ .+. ..+++++.|...| |+++.+|++
T Consensus 537 ~~~~~~~v~~~DlRDra~my~~~lst~~~~~s~~i~~e~~~s~~~~~~i~~~~~~~~t~~~l~nl~~~~t~~~l~~~~~~ 616 (757)
T COG5096 537 LRRCFDYVLVPDLRDRARMYSRLLSTPLPEFSDPILCEAKKSNSQFEIILSALLTNQTPELLENLRLDFTLGTLSTIPLK 616 (757)
T ss_pred HHHHHhccCChhHHHHHHHHHHHhcCCCccccchhhhcccccccchhhhhhhhccccCHHHHHhhhccccccceeccCCC
Confidence 8988865 689999999999999994 5688888999886655442 233 3444444444445 999999999
Q ss_pred cchhhccCC
Q 007343 597 VTTMSKIGF 605 (607)
Q Consensus 597 ~~~~~~~~~ 605 (607)
|+..+..|.
T Consensus 617 ~~~~l~~~~ 625 (757)
T COG5096 617 PIFNLRKGA 625 (757)
T ss_pred CcccCCCCc
Confidence 999988774
No 8
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-60 Score=500.51 Aligned_cols=509 Identities=18% Similarity=0.259 Sum_probs=426.8
Q ss_pred CcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHH
Q 007343 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL 99 (607)
Q Consensus 20 ~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~ 99 (607)
.-+.|+|+|+++ .+...|.+++.|+.|+.|+|+|++|.-++++.+|++..+..||+||++.++-++..+|+++
T Consensus 36 ~~l~e~r~E~k~-------~d~~~k~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlm 108 (877)
T KOG1059|consen 36 QCLEEIRQELKS-------DDLNVKSNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLM 108 (877)
T ss_pred HHHHHHHHHhhc-------hhhhhhHHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHH
Confidence 347889999997 5567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHH
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L 179 (607)
|++|+++||++|+|.+-.|+||..|+++.+|++++.+.++|..+|+++.|||||+|++.++|+|..|||.+ ..-+++|
T Consensus 109 L~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~FprL 186 (877)
T KOG1059|consen 109 LTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFPRL 186 (877)
T ss_pred HHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 3466778
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~ 259 (607)
.+- |.|+||+|+++|+.+++|+++++|.+..+++| .+++|+. ...|+|.-+++|++++.+.|-+|+..
T Consensus 187 ~Ek-LeDpDp~V~SAAV~VICELArKnPknyL~LAP---------~ffkllt--tSsNNWmLIKiiKLF~aLtplEPRLg 254 (877)
T KOG1059|consen 187 VEK-LEDPDPSVVSAAVSVICELARKNPQNYLQLAP---------LFYKLLV--TSSNNWVLIKLLKLFAALTPLEPRLG 254 (877)
T ss_pred HHh-ccCCCchHHHHHHHHHHHHHhhCCcccccccH---------HHHHHHh--ccCCCeehHHHHHHHhhccccCchhh
Confidence 887 49999999999999999999999987655544 4667655 45899999999999999999999999
Q ss_pred HHHHHHHHHHhccCch-HHHHHHHHHHHhhcCC--cchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc
Q 007343 260 FDIMNLLEDRLQHANG-AVVLSTIKVFLHLTLS--MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI 336 (607)
Q Consensus 260 ~~il~~l~~~L~~~n~-aVv~~ai~~i~~l~~~--~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~ 336 (607)
.++++.+.+++.++.+ +++|||+++++..... +++ +.....-...-|..|+.++|+|++|++|-++..++..+|..
T Consensus 255 KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d-~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~ 333 (877)
T KOG1059|consen 255 KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD-HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA 333 (877)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC-cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH
Confidence 9999999999988765 6999999999876321 212 11111222334567888999999999999999999999999
Q ss_pred cccccce-eeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHH-HHHHcccC----ChHH
Q 007343 337 FASDYKH-FYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDI-PIARESIRAV-GKIALQQY----DVNA 409 (607)
Q Consensus 337 ~~~~~~~-f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~-~~~~~~i~~I-~~la~k~~----~~~~ 409 (607)
++.|... +-|..|.+.+||.++||+|+.|+|++|+..||+.|+.|+..+|. .++.+++..| +.|+.... +.+|
T Consensus 334 Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW 413 (877)
T KOG1059|consen 334 VQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW 413 (877)
T ss_pred HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 9998875 45777778899999999999999999999999999999988876 7888876655 56665432 3589
Q ss_pred HHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhc---------cCCchHHHHHHHHHHhcccCCCC
Q 007343 410 IVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQ---------NVQEPKAKAALIWMLGEYSQDMQ 480 (607)
Q Consensus 410 ~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~---------~~~~~~~~~~~iwilGEy~~~i~ 480 (607)
|+.++++|....|..-...+...+.++..+.|..|+..+..+..++.+ .-.-+++..|++|++|||++.++
T Consensus 414 YlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ve 493 (877)
T KOG1059|consen 414 YLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVE 493 (877)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhh
Confidence 999999999988766666777889999999999998766555555421 22346788999999999999999
Q ss_pred ChHHHHHHHHHhhh-cCCcHHHHHHHHHHHHHHhhcC-----Cc----hhHHHHHHHH---HHhhcCCChhHHhHHHHHH
Q 007343 481 DAPYILESLTENWE-EEPSAEVRLHLLTAVMKCFFKR-----PP----ETQKVLGAAL---AAGLADFHQDVHDRALFYH 547 (607)
Q Consensus 481 ~~~~~l~~l~~~f~-~e~~~~vk~~iLta~~Kl~~~~-----p~----~~~~~~~~~l---~~~~~d~~~dvrdRA~~y~ 547 (607)
|+.++++.+.+.-. ..+ ..++...+.+++|+|+.. |. ....++..++ .....+.|.|||+||.+..
T Consensus 494 n~~~~leamlrpr~~~lp-~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~ 572 (877)
T KOG1059|consen 494 NPNDTLEAMLRPRSDLLP-GHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVL 572 (877)
T ss_pred CHHHHHHHHhcCccccCc-hHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHH
Confidence 99999999998755 556 999999999999999853 11 0112233333 3445678999999966555
Q ss_pred HHcc
Q 007343 548 RLLQ 551 (607)
Q Consensus 548 ~Ll~ 551 (607)
.+++
T Consensus 573 ~li~ 576 (877)
T KOG1059|consen 573 ELIR 576 (877)
T ss_pred HHHH
Confidence 4443
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-48 Score=409.37 Aligned_cols=430 Identities=22% Similarity=0.335 Sum_probs=366.5
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhh-hccCCCchhHHHHHHHHHhhccCCCh----
Q 007343 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPD---- 96 (607)
Q Consensus 22 ~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~-l~~s~~~~~Krl~YL~l~~~~~~~~e---- 96 (607)
-.||++.|++ ++++.|.++|||+|+.|..|+++++++++||+ ++.+.|.++||+.|.||...-+.++|
T Consensus 22 ~~~ik~~Lek-------~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~ 94 (948)
T KOG1058|consen 22 EDEIKEKLEK-------GDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLL 94 (948)
T ss_pred hHHHHHHHhc-------CChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccH
Confidence 4688999998 66789999999999999999999999999998 78999999999999999999888774
Q ss_pred -HHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCc
Q 007343 97 -LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADF 175 (607)
Q Consensus 97 -l~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~ 175 (607)
.++|++|+++|||+|||+++||..||++|.++.+|+.+.++|.|+.+|.|.++||||.|++|+..+|+..-..+ ++.
T Consensus 95 ~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~--pDa 172 (948)
T KOG1058|consen 95 HEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLI--PDA 172 (948)
T ss_pred HHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhc--CCh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999987777 678
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHh---hcCCCChhHHHHHHHHHhccC
Q 007343 176 PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN---RIKEFSEWAQCLVLELVAKYV 252 (607)
Q Consensus 176 ~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~---~l~~~~~w~qi~iL~lL~~~~ 252 (607)
.+.+.+.|..|.||++..||+..|..+.+. ..+.+|.. +++.+++-+|..|++++.+.+
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~E------------------rAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~ 234 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTDPE------------------RALNYLLSNIDQIPSFNDSLQLVIVELIRKVC 234 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcCHH------------------HHHHHHHhhHhhccCccHHHHHHHHHHHHHHH
Confidence 899999988999999999999999886432 13455554 457789999999999999999
Q ss_pred CCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHh-ccCCchhHHHHHHHHHHHHh
Q 007343 253 PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV-SSGSPEQSYAVLSHLHILVM 331 (607)
Q Consensus 253 ~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll-~s~~~ni~y~~L~~i~~l~~ 331 (607)
..+|.+....+..+..+|++++++|.|||+-++..+.+... .++...+.++.++ ..+|.|++.++|..+..+-.
T Consensus 235 ~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-----alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~ 309 (948)
T KOG1058|consen 235 LANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-----ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA 309 (948)
T ss_pred hcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-----HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence 99999999999999999999999999999999988876533 3344444445444 45899999999999999887
Q ss_pred hCCcccccccceee-eccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHH-HHhhcC------CHHHHHHHHHHHHHHHcc
Q 007343 332 RAPFIFASDYKHFY-CQYNEPSYVKKLKLEMLTAVANESNTYEIVTELC-EYAANV------DIPIARESIRAVGKIALQ 403 (607)
Q Consensus 332 ~~p~~~~~~~~~f~-~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~-~y~~~~------d~~~~~~~i~~I~~la~k 403 (607)
.+-.+++..+-.+. +....+..||+++|++...|+...|+.+|+.-|. +..... ...+++.++++|+.||.+
T Consensus 310 ~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 310 LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 77666666543332 3344456799999999999999999999999887 443332 246899999999999999
Q ss_pred cCCh-HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCCh
Q 007343 404 QYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA 482 (607)
Q Consensus 404 ~~~~-~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~ 482 (607)
||+. +..|..+++++...++.....++.+++..+.++|+++..++..+-.- ...+..+.+-..++||+|||++-..+.
T Consensus 390 Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~-~~~irS~ki~rgalwi~GeYce~~~~i 468 (948)
T KOG1058|consen 390 FPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLET-FPQIRSSKICRGALWILGEYCEGLSEI 468 (948)
T ss_pred ChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHh-hhhhcccccchhHHHHHHHHHhhhHHH
Confidence 9996 57999999999999999999999999999999999987654333222 256778888888999999999876644
Q ss_pred HH
Q 007343 483 PY 484 (607)
Q Consensus 483 ~~ 484 (607)
..
T Consensus 469 ~~ 470 (948)
T KOG1058|consen 469 QS 470 (948)
T ss_pred HH
Confidence 33
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-35 Score=317.35 Aligned_cols=495 Identities=16% Similarity=0.256 Sum_probs=417.9
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCC-----CcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCCh
Q 007343 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGI-----DVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD 96 (607)
Q Consensus 22 ~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~-----d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~e 96 (607)
.+|-| .|++ .|=+..+++.++.|++|+...|+ +...+|+.+.|+++++|..+||++|+++........|
T Consensus 24 lqe~r-~fne-----spvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~ised 97 (865)
T KOG1078|consen 24 LQEAR-TFNE-----SPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISED 97 (865)
T ss_pred HHHHH-hhcC-----CCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchh
Confidence 45555 4554 33445788999999999999995 5677899999999999999999999999999887666
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCch
Q 007343 97 LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFP 176 (607)
Q Consensus 97 l~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~ 176 (607)
+ +++++++.||.+..++.+|+.|||+|+.|-+..+.+.....++++..|++|.|+-.|+..-++++..+++.+ ..|.
T Consensus 98 v-iivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~v--krw~ 174 (865)
T KOG1078|consen 98 V-IIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVV--KRWA 174 (865)
T ss_pred h-hhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHH--HHHH
Confidence 5 899999999999999999999999999999999999999999999999999999999999999999999988 5799
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC---CCChhHHHHHHHHHhccCC
Q 007343 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK---EFSEWAQCLVLELVAKYVP 253 (607)
Q Consensus 177 ~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~---~~~~w~qi~iL~lL~~~~~ 253 (607)
..+++.. .+.|.+|...|+.+|+.|.+++. -.+.++++... -.+|..++.+++.-.....
T Consensus 175 neiqea~-~s~~~m~QyHalglLyqirk~dr----------------la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~ 237 (865)
T KOG1078|consen 175 NEVQEAV-NSDNIMVQYHALGLLYQIRKNDR----------------LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLK 237 (865)
T ss_pred Hhhhhcc-CcHHHHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHHccccccchhHHHHHHHHHHHHhh
Confidence 9999985 67788999999999999976421 12344444332 3688899999988887766
Q ss_pred CChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC
Q 007343 254 LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (607)
Q Consensus 254 ~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~ 333 (607)
+++.-...+...+...++|....|.+||++.+..+..-.+.. +......|..|+++..+-+||.+.+.+.+++..+
T Consensus 238 ~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~----l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~ 313 (865)
T KOG1078|consen 238 ENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE----LAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKH 313 (865)
T ss_pred hcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh----cchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhC
Confidence 665444567788889999999999999999999887643321 2224556778899889999999999999999999
Q ss_pred Cccc---ccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh-HH
Q 007343 334 PFIF---ASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NA 409 (607)
Q Consensus 334 p~~~---~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-~~ 409 (607)
|+.+ ..++..+.-..| .+|...|+-.|++-.+++|++.+++....++.+.+.+|+.-.+.+|..++.+||.. ..
T Consensus 314 P~~v~~cN~elE~lItd~N--rsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~ 391 (865)
T KOG1078|consen 314 PQAVTVCNLDLESLITDSN--RSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTV 391 (865)
T ss_pred CccccccchhHHhhhcccc--cchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHH
Confidence 9854 445554432222 56899999999999999999999999999999999999999999999999999974 56
Q ss_pred HHHHHHHhhhhcCc-hhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCChHHHHHH
Q 007343 410 IVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILES 488 (607)
Q Consensus 410 ~v~~ll~ll~~~~~-~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~~ 488 (607)
+++++-.+|...|. .....++.+|..++..+|+..+..+..++..+ ++++.+..-.-+..++|.-|...++|...++.
T Consensus 392 ~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI-EDce~~~i~~rILhlLG~EgP~a~~Pskyir~ 470 (865)
T KOG1078|consen 392 MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI-EDCEFTQIAVRILHLLGKEGPKAPNPSKYIRF 470 (865)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH-HhccchHHHHHHHHHHhccCCCCCCcchhhHH
Confidence 88888888887664 35677788999999999998887766677764 77777777677899999999999999999999
Q ss_pred HHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhHHhHHHHHHHHcc
Q 007343 489 LTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQ 551 (607)
Q Consensus 489 l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dvrdRA~~y~~Ll~ 551 (607)
++++...|. ..||++.++|++|+-...+ ..++-+.-+++.|.+|.|.||||||.+|.+.+.
T Consensus 471 iyNRviLEn-~ivRaaAv~alaKfg~~~~-~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 471 IYNRVILEN-AIVRAAAVSALAKFGAQDV-VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred Hhhhhhhhh-hhhHHHHHHHHHHHhcCCC-CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 999999999 9999999999999996554 355668889999999999999999999999888
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-31 Score=278.34 Aligned_cols=507 Identities=15% Similarity=0.179 Sum_probs=406.4
Q ss_pred CcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCC-----cchhhhhhhhhccCCCchhHHHHHHHHHhhccCC
Q 007343 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID-----VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN 94 (607)
Q Consensus 20 ~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d-----~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~ 94 (607)
.=.++.++.|.+ +|-...+.+.++.++.|+...|+- +..+|+.+.|+++++|..+|+-+|+++..+..-.
T Consensus 22 t~~qd~~~sfn~-----Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t 96 (898)
T COG5240 22 TLLQDMNESFNK-----SPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT 96 (898)
T ss_pred HHHHHHHHHhcc-----CCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc
Confidence 334555655654 233346778999999999999974 5668999999999999999999999999998876
Q ss_pred ChHHHHHHHHHHHHcCCCCH-HHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCC
Q 007343 95 PDLALLTINFLQRDCKDEDP-MIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDA 173 (607)
Q Consensus 95 ~el~~L~iNtl~kDl~~~n~-~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~ 173 (607)
.|+ +|.+|+++||++...| .+|..|+|++-.+-..+++......+..+..++++-+|..|+...++++-.+-+.+ .
T Consensus 97 edv-lm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~--~ 173 (898)
T COG5240 97 EDV-LMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQT--K 173 (898)
T ss_pred hhh-hHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHH--H
Confidence 665 8999999999999887 99999999999999999999999999999999999999999888888875554444 3
Q ss_pred CchHHHHHhhcC---------------CCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCCh
Q 007343 174 DFPPTLKHLMLN---------------DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSE 238 (607)
Q Consensus 174 ~~~~~L~~lLl~---------------D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~ 238 (607)
.|.+..++..++ ..++.-..+|+.+|..+.+++. .. . -..++++.......+.
T Consensus 174 rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk----------ma-~-lklv~hf~~n~smknq 241 (898)
T COG5240 174 RWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK----------MA-Q-LKLVEHFRGNASMKNQ 241 (898)
T ss_pred HHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH----------HH-H-HHHHHHhhcccccccc
Confidence 566555544311 1355566778888877755321 00 0 0123343333333455
Q ss_pred hHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchh
Q 007343 239 WAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQ 318 (607)
Q Consensus 239 w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni 318 (607)
..-+.+++.......++++....+...+...|++...+|.+|++|.++.+.... +..+.++.....|.+||.+...-.
T Consensus 242 ~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~s~rv~~ 319 (898)
T COG5240 242 LAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLKSTRVVL 319 (898)
T ss_pred hhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcchHHH
Confidence 566777777766666777766667777888888888999999999999865322 223455566778899999888888
Q ss_pred HHHHHHHHHHHHhhCCcc---cccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 007343 319 SYAVLSHLHILVMRAPFI---FASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIR 395 (607)
Q Consensus 319 ~y~~L~~i~~l~~~~p~~---~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~ 395 (607)
||.|++.+.+++..+|+. ..++++.+.-..| ..|..-++--|.+-.+++|+..+++.+-.|+.+.+..|+.-+|.
T Consensus 320 rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~N--r~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~id 397 (898)
T COG5240 320 RFSAMRILNQLAMKYPQKVSVCNKEVESLISDEN--RTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAID 397 (898)
T ss_pred HHHHHHHHHHHHhhCCceeeecChhHHHHhhccc--ccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHH
Confidence 999999999999999984 3455555443333 45888999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCCh-HHHHHHHHHhhhhcCc-hhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHh
Q 007343 396 AVGKIALQQYDV-NAIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLG 473 (607)
Q Consensus 396 ~I~~la~k~~~~-~~~v~~ll~ll~~~~~-~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilG 473 (607)
++..++.+||.. ..++++|.+.|...|. ....-++.++.+++...|+..+.++..++..+ ++++.++...-++-|+|
T Consensus 398 a~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fI-EDcey~~I~vrIL~iLG 476 (898)
T COG5240 398 ALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFI-EDCEYHQITVRILGILG 476 (898)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH-hhcchhHHHHHHHHHhc
Confidence 999999999974 4599999888776665 47788889999999999999988877788774 88999999888999999
Q ss_pred cccCCCCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHhhcCCChhHHhHHHHHHHHccC
Q 007343 474 EYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQKVLGAALAAGLADFHQDVHDRALFYHRLLQY 552 (607)
Q Consensus 474 Ey~~~i~~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~-~~~~~~~~~l~~~~~d~~~dvrdRA~~y~~Ll~~ 552 (607)
+-|...++|-.+.+.++++...|. ..||.+.+.|+.|+.....+ -.+.-+..+|+.|.+|.|.||||||-+..+-+..
T Consensus 477 ~EgP~a~~P~~yvrhIyNR~iLEN-~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 477 REGPRAKTPGKYVRHIYNRLILEN-NIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ccCCCCCCcchHHHHHHHHHHHhh-hHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999 99999999999999876532 3456788999999999999999999999887774
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.48 E-value=5.2e-12 Score=141.18 Aligned_cols=328 Identities=18% Similarity=0.182 Sum_probs=176.8
Q ss_pred hhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCC--hHhhHHH-HHHHHhhhcCC
Q 007343 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVEY-LVGPLGLGLKD 146 (607)
Q Consensus 70 ~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~-l~~~i~~~L~d 146 (607)
+-+.++|...+-++--+++.+. .+|++--+.+.+.+-+.|++|+||.-|+.++.++. .|+.++. +.+.+.+++.|
T Consensus 86 kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d 163 (526)
T PF01602_consen 86 KDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSD 163 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTH
T ss_pred HhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccC
Confidence 3455666666666666666654 56666666677777777777777777766666662 3566555 56666666677
Q ss_pred CChHHHHHHHHHHHHHHhhCCC----CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcc
Q 007343 147 NNSYVRTVAVIGVLKLYHISAP----TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (607)
Q Consensus 147 ~~~~VRK~A~lal~kl~~~~p~----~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~ 222 (607)
++|-|+..|+.++..+ +..|+ .+ +.+...|.+++ .+.+|.+...++..+..+...++.... .
T Consensus 164 ~~~~V~~~a~~~l~~i-~~~~~~~~~~~--~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~~-----~----- 229 (526)
T PF01602_consen 164 KDPSVVSAALSLLSEI-KCNDDSYKSLI--PKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDAD-----K----- 229 (526)
T ss_dssp SSHHHHHHHHHHHHHH-HCTHHHHTTHH--HHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHHH-----H-----
T ss_pred CcchhHHHHHHHHHHH-ccCcchhhhhH--HHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhhh-----H-----
Confidence 7777776666666666 22222 22 45666666663 666777776777777666665543110 0
Q ss_pred hHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCc-chhHHHHHH
Q 007343 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYE 301 (607)
Q Consensus 223 ~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~-~~~~~~~~~ 301 (607)
..++..+.+.+...++=......+++..+.+..+ ....+++.+..++.+.++.+.+-+.+.+..+.... +.+.
T Consensus 230 ~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----- 303 (526)
T PF01602_consen 230 NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----- 303 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-----
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-----
Confidence 0123333333333444455556666655544322 44556666666666666666666666666655433 1111
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCC-cccccccceeeeccCCCHhHHHHHHHHHHHcc--CCCCHHHHHHHH
Q 007343 302 RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-FIFASDYKHFYCQYNEPSYVKKLKLEMLTAVA--NESNTYEIVTEL 378 (607)
Q Consensus 302 ~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p-~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~--n~~N~~~Iv~eL 378 (607)
.....+..+..+.++.+|..+|+.+..++.... ..+-+++.. |+...++..+|...+.-+..+| ...+.+..++-|
T Consensus 304 ~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~-~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l 382 (526)
T PF01602_consen 304 NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLK-YLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTL 382 (526)
T ss_dssp THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHH
T ss_pred hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHH-HHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHH
Confidence 011111222325566666666666666654321 011111111 1222222335555555555554 234556666666
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHcccCCh-HHHHHHHHHhhhh
Q 007343 379 CEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEM 420 (607)
Q Consensus 379 ~~y~~~~d~~~~~~~i~~I~~la~k~~~~-~~~v~~ll~ll~~ 420 (607)
.+.+...+..+..+++..|..+..++|+. .+.+..+.+++..
T Consensus 383 ~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 383 LKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLED 425 (526)
T ss_dssp HHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS
T ss_pred HHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 66666555556666666666666666553 4566666666654
No 13
>PRK09687 putative lyase; Provisional
Probab=99.20 E-value=2.3e-09 Score=109.59 Aligned_cols=260 Identities=15% Similarity=0.056 Sum_probs=182.5
Q ss_pred CCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhc
Q 007343 12 SPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYA 91 (607)
Q Consensus 12 ~~~~~~~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~ 91 (607)
+.+..+.+..+.+|...|.+ .+...|..+++-+ .-.|.+- .|+.+.+++.++|...|+.+=-.+..+.
T Consensus 15 ~~~~~~~~~~~~~L~~~L~d-------~d~~vR~~A~~aL---~~~~~~~--~~~~l~~ll~~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 15 SLYSQCKKLNDDELFRLLDD-------HNSLKRISSIRVL---QLRGGQD--VFRLAIELCSSKNPIERDIGADILSQLG 82 (280)
T ss_pred HHHHHHhhccHHHHHHHHhC-------CCHHHHHHHHHHH---HhcCcch--HHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 44556677778888888875 3345566655443 3345432 4788888889999999999888888886
Q ss_pred cCCChHHHHHHHHHHHH-cCCCCHHHHHHHHHHhhcCChHhh--HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC
Q 007343 92 KVNPDLALLTINFLQRD-CKDEDPMIRGLALRSLCSLRVANL--VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (607)
Q Consensus 92 ~~~~el~~L~iNtl~kD-l~~~n~~ir~lALr~l~~i~~~e~--~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~ 168 (607)
..... .--+.+.|..- ++|+++.||+.|+.+||.++.++. .+.+...+...+.|+++.||+.|+.++.++-
T Consensus 83 ~~~~~-~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 83 MAKRC-QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred CCccc-hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence 43211 11233444433 588999999999999999875543 2345556677889999999999999997652
Q ss_pred CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHH
Q 007343 169 TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (607)
Q Consensus 169 ~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL 248 (607)
.+..++.|..+| .|+|+.|+..|+.+|..+.... +..+..|+..+.+.+++.+...+..|
T Consensus 157 ---~~~ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~~----------------~~~~~~L~~~L~D~~~~VR~~A~~aL 216 (280)
T PRK09687 157 ---DEAAIPLLINLL-KDPNGDVRNWAAFALNSNKYDN----------------PDIREAFVAMLQDKNEEIRIEAIIGL 216 (280)
T ss_pred ---CHHHHHHHHHHh-cCCCHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 245678888884 8999999999999998873211 22455667777899999999999999
Q ss_pred hccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhc-cCCchhHHHHHHHHH
Q 007343 249 AKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS-SGSPEQSYAVLSHLH 327 (607)
Q Consensus 249 ~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~-s~~~ni~y~~L~~i~ 327 (607)
+++.. + ..++.+...|++.. +..+++..+..++.. +..+.|..++. +.|+.++-.+...+.
T Consensus 217 g~~~~--~----~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 217 ALRKD--K----RVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HccCC--h----hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 98643 2 46777777777755 667788777777643 23456666775 567777777766654
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.18 E-value=8.1e-09 Score=122.24 Aligned_cols=271 Identities=18% Similarity=0.155 Sum_probs=140.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHH
Q 007343 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (607)
Q Consensus 102 iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~ 181 (607)
++.|..-|.|++|.+|..|+..|+.+..++..+ .|.+.|.|+++.||..|+.++.++-...+. .+.|..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~----~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~ 691 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFGP----ALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRD 691 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHH----HHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHH
Confidence 456666666777777777777777666555333 334555667777777666666655321111 234445
Q ss_pred hhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHH
Q 007343 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD 261 (607)
Q Consensus 182 lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~ 261 (607)
+ +.|+|+.|+.+|+.+|..+...+ ...++..+.+.+++.+...++.|....+.
T Consensus 692 ~-L~~~d~~VR~~A~~aL~~~~~~~-------------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~------- 744 (897)
T PRK13800 692 H-LGSPDPVVRAAALDVLRALRAGD-------------------AALFAAALGDPDHRVRIEAVRALVSVDDV------- 744 (897)
T ss_pred H-hcCCCHHHHHHHHHHHHhhccCC-------------------HHHHHHHhcCCCHHHHHHHHHHHhcccCc-------
Confidence 4 36666777766666665543110 11233445566666666666666654221
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccccccc
Q 007343 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (607)
Q Consensus 262 il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~ 341 (607)
+.+...+.+.++.|..++++.+..+...... ..+.|..++.+.++++|..++..+..+-... .+... +
T Consensus 745 --~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~~~~~-l 812 (897)
T PRK13800 745 --ESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDPLVRAAALAALAELGCPP-DDVAA-A 812 (897)
T ss_pred --HHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hhHHH-H
Confidence 2234456666666766666666655433211 1123445566666667766666665442110 01000 0
Q ss_pred ceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhc
Q 007343 342 KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME 421 (607)
Q Consensus 342 ~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~ 421 (607)
. -...+++..||..+++.|..+.++.-+ .-|...+.+.+..+++.++.+++.+. ......+.|...++..
T Consensus 813 ~--~aL~d~d~~VR~~Aa~aL~~l~~~~a~----~~L~~~L~D~~~~VR~~A~~aL~~~~----~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 813 T--AALRASAWQVRQGAARALAGAAADVAV----PALVEALTDPHLDVRKAAVLALTRWP----GDPAARDALTTALTDS 882 (897)
T ss_pred H--HHhcCCChHHHHHHHHHHHhccccchH----HHHHHHhcCCCHHHHHHHHHHHhccC----CCHHHHHHHHHHHhCC
Confidence 0 012233345666666666666543322 33334455666666666666666641 1112344445555544
Q ss_pred CchhhHHHHHH
Q 007343 422 KDYVTAEALVL 432 (607)
Q Consensus 422 ~~~v~~e~i~~ 432 (607)
...|..+++..
T Consensus 883 d~~Vr~~A~~a 893 (897)
T PRK13800 883 DADVRAYARRA 893 (897)
T ss_pred CHHHHHHHHHH
Confidence 44444444433
No 15
>PTZ00429 beta-adaptin; Provisional
Probab=99.17 E-value=3.9e-07 Score=104.20 Aligned_cols=447 Identities=14% Similarity=0.144 Sum_probs=255.8
Q ss_pred HHcCCCCHHHHHHHHHHhhcCC--hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhc
Q 007343 107 RDCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML 184 (607)
Q Consensus 107 kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl 184 (607)
|-+.++|..+|-+.--.+.+.. .|+.+-..+..+++-+.|+||+||--|+-++..+- .|+.+ +.....+++++
T Consensus 75 k~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~--e~l~~~lkk~L- 149 (746)
T PTZ00429 75 KLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIR--VSSVL--EYTLEPLRRAV- 149 (746)
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--cHHHH--HHHHHHHHHHh-
Confidence 4667889999998866666653 37777788899999999999999999999998773 45554 34667788885
Q ss_pred CCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH---HH
Q 007343 185 NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI---FD 261 (607)
Q Consensus 185 ~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~---~~ 261 (607)
.|++|.|+.+|+.++..+.+.+|+. ++ ....+..|...+.+.++-.+...+.+|......+++.. ..
T Consensus 150 ~D~~pYVRKtAalai~Kly~~~pel----v~------~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~ 219 (746)
T PTZ00429 150 ADPDPYVRKTAAMGLGKLFHDDMQL----FY------QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNE 219 (746)
T ss_pred cCCCHHHHHHHHHHHHHHHhhCccc----cc------ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHH
Confidence 9999999999999999998876642 11 11134455556779999999999998888765544322 23
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC-Ccccccc
Q 007343 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASD 340 (607)
Q Consensus 262 il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~-p~~~~~~ 340 (607)
.+..+...+...+.=-.....+++..+.+....-...++ ..+...++++++-+-+-+.+.+..+.... |+....-
T Consensus 220 ~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~il----~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~ 295 (746)
T PTZ00429 220 WVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETLL----TRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC 295 (746)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHHH----HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 333344444444544444555556655554332222333 33445566677766676666666554321 2221110
Q ss_pred ---cc--eeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHH-HHhhcCCHH-HHHHHHHHHHHHHcccCChHHHHHH
Q 007343 341 ---YK--HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELC-EYAANVDIP-IARESIRAVGKIALQQYDVNAIVDR 413 (607)
Q Consensus 341 ---~~--~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~-~y~~~~d~~-~~~~~i~~I~~la~k~~~~~~~v~~ 413 (607)
+. .+....++|. +|...|+-+..++... -..+..++. .|..-.|+. ++...+.-+-.+|.. .++..+++-
T Consensus 296 ~~rl~~pLv~L~ss~~e-iqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane-~Nv~~IL~E 372 (746)
T PTZ00429 296 TVRVNTALLTLSRRDAE-TQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP-SVAPEILKE 372 (746)
T ss_pred HHHHHHHHHHhhCCCcc-HHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc-ccHHHHHHH
Confidence 10 1122344554 7777776665555422 222333333 234545654 455555555555532 223456666
Q ss_pred HHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCC-chHHHHHHHHHHhcccCCCCChHHHHHHHHHh
Q 007343 414 LLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQ-EPKAKAALIWMLGEYSQDMQDAPYILESLTEN 492 (607)
Q Consensus 414 ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~-~~~~~~~~iwilGEy~~~i~~~~~~l~~l~~~ 492 (607)
|.+........+..+++..|..+..++|...+.|+..+.+++....+ -.++..++--++-.|.+. .++..+++.
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~-----~il~~L~~~ 447 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL-----LMLDTLVTD 447 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH-----HHHHHHHHh
Confidence 66666666667889999999999999999888888777777632111 112333344444444432 245566655
Q ss_pred h--hcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhHHhHHHH-HHHHccCCHHHHhhhcCCCCCCcc
Q 007343 493 W--EEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALF-YHRLLQYNVSVAERVVNPPKQAVS 569 (607)
Q Consensus 493 f--~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dvrdRA~~-y~~Ll~~~~~~~~~i~~~~~p~~~ 569 (607)
+ .....++.|..++=.+.-+.-.-+ ...+.+...++... +.+++||--..- .-+++-..|+..+..+.. .+.
T Consensus 448 ~~~~~i~e~~AKaaiiWILGEy~~~I~-~a~~~L~~~i~~f~-~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~---vL~ 522 (746)
T PTZ00429 448 YGADEVVEEEAKVSLLWMLGEYCDFIE-NGKDIIQRFIDTIM-EHEQRVQLAILSAAVKMFLRDPQGMEPQLNR---VLE 522 (746)
T ss_pred hcccccccHHHHHHHHHHHHhhHhhHh-hHHHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHH---HHH
Confidence 4 122227777774444443322222 23344444443222 346777644322 233444444333222210 111
Q ss_pred cc-cccCChHHHHHHHh
Q 007343 570 VF-ADTQSSEIKDRIFD 585 (607)
Q Consensus 570 ~~-~~~~~~~~~~~l~~ 585 (607)
+. .++.+++++|+-+.
T Consensus 523 ~~t~~~~d~DVRDRA~~ 539 (746)
T PTZ00429 523 TVTTHSDDPDVRDRAFA 539 (746)
T ss_pred HHHhcCCChhHHHHHHH
Confidence 11 23456678777443
No 16
>PRK09687 putative lyase; Provisional
Probab=99.15 E-value=4.8e-09 Score=107.26 Aligned_cols=196 Identities=16% Similarity=0.076 Sum_probs=116.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHH
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L 179 (607)
..++.|.+-+.|+|..+|..|+.+++.++.++..+. +.+++.|+++.||+.|+.++..+-. |+.. .....+.|
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~--~~~~-~~~a~~~L 95 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGM--AKRC-QDNVFNIL 95 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCC--Cccc-hHHHHHHH
Confidence 345666777788888888888888888887665554 3456778888888888888887642 2110 12356667
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~ 259 (607)
..++++|+|+.|+.+|+.+|..++...+.. .+..+..+...+.+.++..+......|..+.. +
T Consensus 96 ~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~--- 158 (280)
T PRK09687 96 NNLALEDKSACVRASAINATGHRCKKNPLY------------SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E--- 158 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccccccccc------------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H---
Confidence 666558888888888888887764322110 01123333344455555566666666655431 1
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q 007343 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (607)
Q Consensus 260 ~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~ 328 (607)
..++.+...|+..++.|...|+..+-.+....+ .+.++|...+.+.+..+|-.+...+..
T Consensus 159 -~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 159 -AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 245566666666666666666666655532211 123445555555555666555555543
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.07 E-value=1.7e-06 Score=106.38 Aligned_cols=413 Identities=15% Similarity=0.056 Sum_probs=239.6
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC---cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchh
Q 007343 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (607)
Q Consensus 136 l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~---~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~ 212 (607)
.+|.+..++++++|.++..|+.++.++...+++. +.+.+.++.|.++|.++.++.|.-+|+.+|..|+..+++.-
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r-- 267 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK-- 267 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH--
Confidence 5677888889999999999999998887665532 23578899999986345677999999999999987543210
Q ss_pred hhhhHhhhcchHHHHHHHhhcCCC---------ChhHHHHHHHHHhccCCC----------------C------------
Q 007343 213 ASREREALISKPVIYYLLNRIKEF---------SEWAQCLVLELVAKYVPL----------------D------------ 255 (607)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~l~~~---------~~w~qi~iL~lL~~~~~~----------------~------------ 255 (607)
...+....+..|++.+..+ +.=.|...+..|+..+.. +
T Consensus 268 -----~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALa 342 (2102)
T PLN03200 268 -----QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALA 342 (2102)
T ss_pred -----HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHH
Confidence 0011111122222222111 111122222222211110 0
Q ss_pred --------hhHHH------HHHHHHHHHhccCc------------------------------------------hHHHH
Q 007343 256 --------SNEIF------DIMNLLEDRLQHAN------------------------------------------GAVVL 279 (607)
Q Consensus 256 --------~~~~~------~il~~l~~~L~~~n------------------------------------------~aVv~ 279 (607)
+.+.. .+...+..+++|.+ .-+.-
T Consensus 343 yll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~ 422 (2102)
T PLN03200 343 YALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQE 422 (2102)
T ss_pred HHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHH
Confidence 00000 01123334444443 33444
Q ss_pred HHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc----cccc-cceee-eccCCCH
Q 007343 280 STIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI----FASD-YKHFY-CQYNEPS 352 (607)
Q Consensus 280 ~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~----~~~~-~~~f~-~~~~d~~ 352 (607)
.++.++.++.....+..+.+.+ -..++|+.||.++++++|..++..+..+....++. .... +..+. +..+.+.
T Consensus 423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~ 502 (2102)
T PLN03200 423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQ 502 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 4444444443332222222222 14567899999889999999999888887544321 1111 11111 2234445
Q ss_pred hHHHHHHHHHHHcc-CCCCHHHHHH------HHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchh
Q 007343 353 YVKKLKLEMLTAVA-NESNTYEIVT------ELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYV 425 (607)
Q Consensus 353 ~Ik~~kL~iL~~l~-n~~N~~~Iv~------eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v 425 (607)
.+|..+.-.|..+| ++.|+..++. -|.+.+.+.+...++.+..+|+.++.... ...+..++.++...+..+
T Consensus 503 ~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d--~~~I~~Lv~LLlsdd~~~ 580 (2102)
T PLN03200 503 KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD--AATISQLTALLLGDLPES 580 (2102)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc--hhHHHHHHHHhcCCChhH
Confidence 69999999999998 4557666553 46788888899999999999999976432 235567788887777666
Q ss_pred hHHHHHHHHHHHHhCCCC--------chhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCCh------HHHHHHHHH
Q 007343 426 TAEALVLVKDLLRKYPQW--------SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA------PYILESLTE 491 (607)
Q Consensus 426 ~~e~i~~i~~i~~~~p~~--------~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~------~~~l~~l~~ 491 (607)
..-++.++.+|+.--... ...++..+.+++. -..++.+..++|+++.|+..-++. ...+..++.
T Consensus 581 ~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~--sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~ 658 (2102)
T PLN03200 581 KVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS--SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK 658 (2102)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH
Confidence 666666776665422211 1124455666652 236778888899999998754331 123445555
Q ss_pred hhhcCCcHHHHHHHHHHHHHHhhcCCch-hHH-----HHHHHHHHhhcCCChhHHhHHHHHHHHccCCHHHHhhhc
Q 007343 492 NWEEEPSAEVRLHLLTAVMKCFFKRPPE-TQK-----VLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVV 561 (607)
Q Consensus 492 ~f~~e~~~~vk~~iLta~~Kl~~~~p~~-~~~-----~~~~~l~~~~~d~~~dvrdRA~~y~~Ll~~~~~~~~~i~ 561 (607)
...... .++|...-.++.-++....++ ... .+..+++.. .+.|.++++-|..-..-+-.+++.+.++.
T Consensus 659 LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~Al~ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 659 LLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQAVCALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence 555555 778888888878787533211 111 233344433 46788999988886555555555554444
No 18
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.04 E-value=5.2e-07 Score=110.88 Aligned_cols=354 Identities=14% Similarity=0.062 Sum_probs=228.5
Q ss_pred hhhccCCCchhHHHHHHHHHhhccCCChHHH-----HHHHHHHHHcCCCCHHHHHHHHHHhhcCC--hHhhHH-----HH
Q 007343 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVE-----YL 136 (607)
Q Consensus 69 i~l~~s~~~~~Krl~YL~l~~~~~~~~el~~-----L~iNtl~kDl~~~n~~ir~lALr~l~~i~--~~e~~~-----~l 136 (607)
|.++.+.+.+.+.=+-..+..+...+.|... ..++.|.+-|.++++.++-.|+++++++. .++-.. ..
T Consensus 410 V~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa 489 (2102)
T PLN03200 410 VGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG 489 (2102)
T ss_pred hhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 4455555566665555566666655555322 25889999999999999999999999884 333332 45
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhh
Q 007343 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (607)
Q Consensus 137 ~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~ 213 (607)
+|++.++|.++++.+|+.|+.++..+....++ .+.+.+.++.|.++| ++.++.+...|+.+|..+.....
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d------ 562 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTAD------ 562 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccc------
Confidence 68899999999999999999999998764332 333467888899985 88899999999999999875321
Q ss_pred hhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC-ChhH-------HHHHHHHHHHHhccCchHHHHHHHHHH
Q 007343 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNE-------IFDIMNLLEDRLQHANGAVVLSTIKVF 285 (607)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~-~~~~-------~~~il~~l~~~L~~~n~aVv~~ai~~i 285 (607)
...+..++..+...++-.+..+++.+...... +.++ ....++.+..+|+|.+..+.-+|+.++
T Consensus 563 ---------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 563 ---------AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred ---------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11234455556556666777788887654321 1111 124678899999999999999999999
Q ss_pred HhhcCCcchhHHHHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc-----ccccccceeee--ccCCCHhHHHH
Q 007343 286 LHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-----IFASDYKHFYC--QYNEPSYVKKL 357 (607)
Q Consensus 286 ~~l~~~~~~~~~~~~-~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~-----~~~~~~~~f~~--~~~d~~~Ik~~ 357 (607)
..+....++..+.++ ..+.+||+.++++++.+++.-+-..+..+...... +.....-.-+| ..+.+.-++..
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~ 713 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQ 713 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHH
Confidence 988876666444333 45678899999999999988888887777642110 01111100011 12222346666
Q ss_pred HHHHHHHccCCC-CHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh---------HHHHHHHHHhhhhcC
Q 007343 358 KLEMLTAVANES-NTY-----EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV---------NAIVDRLLQFLEMEK 422 (607)
Q Consensus 358 kL~iL~~l~n~~-N~~-----~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~---------~~~v~~ll~ll~~~~ 422 (607)
+++.|..++... +.. .++.-|.+++++.++.-++.++.++..++..+|.. ..++.-|+++|+..+
T Consensus 714 Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~ 793 (2102)
T PLN03200 714 AVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD 793 (2102)
T ss_pred HHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 666666655433 332 23445666666666666677777777766666521 123455555555433
Q ss_pred c--hhhHHHHHHHHHHHH
Q 007343 423 D--YVTAEALVLVKDLLR 438 (607)
Q Consensus 423 ~--~v~~e~i~~i~~i~~ 438 (607)
. ....|+..++..+.|
T Consensus 794 ~~~~~~~~al~~l~~l~~ 811 (2102)
T PLN03200 794 LDSSATSEALEALALLAR 811 (2102)
T ss_pred cchhhHHHHHHHHHHHHh
Confidence 2 222345555555555
No 19
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.03 E-value=9.3e-08 Score=113.29 Aligned_cols=257 Identities=17% Similarity=0.143 Sum_probs=169.2
Q ss_pred HHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHH
Q 007343 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVA 193 (607)
Q Consensus 114 ~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~ 193 (607)
+..|-.|+.++ ..+ ..+.+...|.|++|.||+.|+.++.++. .++.++.|..+| +|+|+.|+.
T Consensus 608 ~~~~~~~~~~l---~~~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL-~D~d~~VR~ 670 (897)
T PRK13800 608 PSPRILAVLAL---DAP-----SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAAL-GDGAAAVRR 670 (897)
T ss_pred chHHHHHHHhc---cch-----hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHH-cCCCHHHHH
Confidence 34444566665 222 3345667789999999999999999874 134678888885 999999999
Q ss_pred HHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccC
Q 007343 194 NCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA 273 (607)
Q Consensus 194 ~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~ 273 (607)
.|+.+|.++....+. ...|...+.+.+++.+..+++.|......++ ..+...|+..
T Consensus 671 ~Aa~aL~~l~~~~~~-----------------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~ 726 (897)
T PRK13800 671 AAAEGLRELVEVLPP-----------------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDP 726 (897)
T ss_pred HHHHHHHHHHhccCc-----------------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCC
Confidence 999999888532110 1233445567899999999999987654432 2345678899
Q ss_pred chHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHh
Q 007343 274 NGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSY 353 (607)
Q Consensus 274 n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~ 353 (607)
++.|..+|++.+..+... ..|..++.+.++++|..+.+.+..+-...+..+.. +. -...+++..
T Consensus 727 d~~VR~~Av~aL~~~~~~-------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~-L~--~ll~D~d~~ 790 (897)
T PRK13800 727 DHRVRIEAVRALVSVDDV-------------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDA-VR--ALTGDPDPL 790 (897)
T ss_pred CHHHHHHHHHHHhcccCc-------------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHH-HH--HHhcCCCHH
Confidence 999999999998876431 12455677889999999999887775443321111 00 111233355
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHH
Q 007343 354 VKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (607)
Q Consensus 354 Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i 433 (607)
||..++.-|-.+.++..+ ...|...+.+.|..++..++.+++.+.. ...++.|+.++......|..+++..+
T Consensus 791 VR~aA~~aLg~~g~~~~~---~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----~~a~~~L~~~L~D~~~~VR~~A~~aL 862 (897)
T PRK13800 791 VRAAALAALAELGCPPDD---VAAATAALRASAWQVRQGAARALAGAAA-----DVAVPALVEALTDPHLDVRKAAVLAL 862 (897)
T ss_pred HHHHHHHHHHhcCCcchh---HHHHHHHhcCCChHHHHHHHHHHHhccc-----cchHHHHHHHhcCCCHHHHHHHHHHH
Confidence 888888888777665332 2334556677777777778888776542 12345566666555555555555544
Q ss_pred HH
Q 007343 434 KD 435 (607)
Q Consensus 434 ~~ 435 (607)
..
T Consensus 863 ~~ 864 (897)
T PRK13800 863 TR 864 (897)
T ss_pred hc
Confidence 43
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.02 E-value=9.7e-07 Score=97.98 Aligned_cols=419 Identities=18% Similarity=0.216 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhhh-hhhhccCCCchhHHHHHHHHHhhccC-CChH-HHHHHHHHHHHcCCCCHHHHHH
Q 007343 43 SKRELFKKVISYMTIGIDVSAVFGE-MVMCSATSDIVLKKMCYLYVGNYAKV-NPDL-ALLTINFLQRDCKDEDPMIRGL 119 (607)
Q Consensus 43 ~k~~~l~kli~~~~~G~d~s~lf~~-vi~l~~s~~~~~Krl~YL~l~~~~~~-~~el-~~L~iNtl~kDl~~~n~~ir~l 119 (607)
.+.+.+..+-.....-...+.+.-. +..++++++-+.--++--.+..++.. .++- .--....+++-|.|++|.||.+
T Consensus 17 ~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l 96 (503)
T PF10508_consen 17 ERLEALPELKTELSSSPFLERLPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRL 96 (503)
T ss_pred chHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 4555665554444333323332222 34567766555444444345555432 3332 3445678899999999999999
Q ss_pred HHHHhhcCCh--Hhh-----HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC--cCCCCchHHHHHhhcCCCChh
Q 007343 120 ALRSLCSLRV--ANL-----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT--CIDADFPPTLKHLMLNDPDPQ 190 (607)
Q Consensus 120 ALr~l~~i~~--~e~-----~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~--~~~~~~~~~L~~lLl~D~d~~ 190 (607)
|++.++++.. ... -..+++.|..++.|++..|.+.|+-++.++.+..+.. +.+++....|.+++ ..+|..
T Consensus 97 ~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~-~~~~~~ 175 (503)
T PF10508_consen 97 ALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLM-SQSSDI 175 (503)
T ss_pred HHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHH-hccCHH
Confidence 9999998622 221 2456778899999999999999999999998755443 32455688888885 555888
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhH----HHHHHHHH
Q 007343 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLL 266 (607)
Q Consensus 191 V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~----~~~il~~l 266 (607)
|+..++.++.+++..++... + ......++..+++.+.+-|.-.|...+++|......+... ...+++.+
T Consensus 176 vR~Rv~el~v~i~~~S~~~~-~------~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L 248 (503)
T PF10508_consen 176 VRCRVYELLVEIASHSPEAA-E------AVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKL 248 (503)
T ss_pred HHHHHHHHHHHHHhcCHHHH-H------HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHH
Confidence 99999999999988765421 1 1122236778888888888899999999999886533221 11355556
Q ss_pred HHHhccC--c---hH-HHHHHHHHHHhhcCCcch-hHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccccc
Q 007343 267 EDRLQHA--N---GA-VVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS 339 (607)
Q Consensus 267 ~~~L~~~--n---~a-Vv~~ai~~i~~l~~~~~~-~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~ 339 (607)
...+.+. + .+ .+.+.++.+.++....+. +. ..+..+...|..++.+.|+..+-+|++++..+....
T Consensus 249 ~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~------ 321 (503)
T PF10508_consen 249 SNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV------ 321 (503)
T ss_pred HHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH------
Confidence 6666432 2 22 345555776666543222 21 122233344456677889999999999998887432
Q ss_pred ccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC--hHHHHHHHHHh
Q 007343 340 DYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD--VNAIVDRLLQF 417 (607)
Q Consensus 340 ~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~--~~~~v~~ll~l 417 (607)
...++| ..........+++....+..+...+++..++.+++.+-...++ ........-..
T Consensus 322 -----------------~G~~~L-~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w 383 (503)
T PF10508_consen 322 -----------------EGKQLL-LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESW 383 (503)
T ss_pred -----------------HHHHHH-HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 112222 2334556788888888898888889999999999988543332 22232222222
Q ss_pred hhhcCchhhHHHHHHHHHHHHh-CCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCChHHHHHHHHHhhhcC
Q 007343 418 LEMEKDYVTAEALVLVKDLLRK-YPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEE 496 (607)
Q Consensus 418 l~~~~~~v~~e~i~~i~~i~~~-~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~~l~~~f~~e 496 (607)
...-++.-... .+..++++ +|+++-.+..++..++ .--|.+-+... .+.+++.+.++-.+.
T Consensus 384 ~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~-----------~~~Wg~~~i~~----~~gfie~lldr~~E~ 445 (503)
T PF10508_consen 384 YESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALA-----------AQPWGQREICS----SPGFIEYLLDRSTET 445 (503)
T ss_pred HHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHh-----------cCHHHHHHHHh----CccHHhhhcCCCCCC
Confidence 22222111111 55566655 3677655444444443 22466655443 466788888776654
Q ss_pred C--cHHHHHHHHHHHHHH
Q 007343 497 P--SAEVRLHLLTAVMKC 512 (607)
Q Consensus 497 ~--~~~vk~~iLta~~Kl 512 (607)
+ ..+-|..++.+++|.
T Consensus 446 ~K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 446 TKEGKEAKYDIIKALAKS 463 (503)
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 4 033445555555544
No 21
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.95 E-value=2.2e-08 Score=95.71 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHhhc--CChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChh
Q 007343 113 DPMIRGLALRSLCS--LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (607)
Q Consensus 113 n~~ir~lALr~l~~--i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~ 190 (607)
||.+|+.|+.+||. ++-|.+++...+.+..+|.|++|.|||.|++++.++...+.-.+. ..+...+..++ .|+|+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-~~l~~~~l~~l-~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-GQLFSRILKLL-VDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-hhhhHHHHHHH-cCCCHH
Confidence 68999999999994 578999999999999999999999999999999999987666553 33434455664 899999
Q ss_pred HHHHHHHHHHHHHhh-ccccchhhhhhHhhhcchHHHHHHHhhcCCCChhH---------HHHHHHHHhccCCCChhHHH
Q 007343 191 VVANCLSALQEIWSL-EASTSEEASREREALISKPVIYYLLNRIKEFSEWA---------QCLVLELVAKYVPLDSNEIF 260 (607)
Q Consensus 191 V~~~a~~~L~ei~~~-~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~---------qi~iL~lL~~~~~~~~~~~~ 260 (607)
|...|...+.++... +|.. + .+.+..++..+..+..|. ...+++.+-.+... ++..+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~-----------i-~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~ 145 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNI-----------I-YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKE 145 (178)
T ss_pred HHHHHHHHHHHHHHhccchH-----------H-HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHH
Confidence 999999999999876 3321 1 124555555666655553 35666666666543 34455
Q ss_pred HHHHHHHHHhcc
Q 007343 261 DIMNLLEDRLQH 272 (607)
Q Consensus 261 ~il~~l~~~L~~ 272 (607)
.+++.+...+..
T Consensus 146 ~l~~kl~~~~~~ 157 (178)
T PF12717_consen 146 SLVEKLCQRFLN 157 (178)
T ss_pred HHHHHHHHHHHH
Confidence 566655554443
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=2.6e-05 Score=83.49 Aligned_cols=330 Identities=16% Similarity=0.149 Sum_probs=219.9
Q ss_pred HHHHHHHHHHHcC-CCCH-----HHHHHHHHHhhc-CChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 98 ALLTINFLQRDCK-DEDP-----MIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 98 ~~L~iNtl~kDl~-~~n~-----~ir~lALr~l~~-i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
..-+|..+-+|.. +++. -..|+|..++|- .......+.+.++|..+++|++.-||--|+.+++.+.+.....+
T Consensus 40 i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v 119 (675)
T KOG0212|consen 40 IRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV 119 (675)
T ss_pred HHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc
Confidence 3444555555553 2222 345666665553 12233788899999999999999999999999999988776655
Q ss_pred C--CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHH-hhcCCCChhHHHHHHHH
Q 007343 171 I--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLL-NRIKEFSEWAQCLVLEL 247 (607)
Q Consensus 171 ~--~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll-~~l~~~~~w~qi~iL~l 247 (607)
. -+++.+.+.++ ..|+|.+|..+|= ++..+.+.-... ... -++-+.+..|+ ..+...+|.....+++-
T Consensus 120 ~~~Fn~iFdvL~kl-saDsd~~V~~~ae-LLdRLikdIVte---~~~----tFsL~~~ipLL~eriy~~n~~tR~flv~W 190 (675)
T KOG0212|consen 120 LVYFNEIFDVLCKL-SADSDQNVRGGAE-LLDRLIKDIVTE---SAS----TFSLPEFIPLLRERIYVINPMTRQFLVSW 190 (675)
T ss_pred ccchHHHHHHHHHH-hcCCccccccHHH-HHHHHHHHhccc---ccc----ccCHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 2 13455666676 4899999988763 344443322210 000 12222344444 35677899999999998
Q ss_pred HhccCCCChhHHH----HHHHHHHHHhccCchHHHHHHHHHHHh----hcCCcchhHHHHHHHHHHHHHHHhccCCchhH
Q 007343 248 VAKYVPLDSNEIF----DIMNLLEDRLQHANGAVVLSTIKVFLH----LTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS 319 (607)
Q Consensus 248 L~~~~~~~~~~~~----~il~~l~~~L~~~n~aVv~~ai~~i~~----l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~ 319 (607)
+.......+-+.. .+++-+..+|..++..|.--|=.++.. +.. .|+.- -.++..+.++.-+.++++++|
T Consensus 191 l~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s-~P~s~--d~~~~i~vlv~~l~ss~~~iq 267 (675)
T KOG0212|consen 191 LYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS-SPSSM--DYDDMINVLVPHLQSSEPEIQ 267 (675)
T ss_pred HHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc-Ccccc--CcccchhhccccccCCcHHHH
Confidence 8876544444433 345555667777888877444443222 222 22210 123456667777788999999
Q ss_pred HHHHHHHHHHHhhCCcccccccc-----eeeeccCCCH-hHHHHHHH---HHHHccCCCC------HHHHHHHHHHHhhc
Q 007343 320 YAVLSHLHILVMRAPFIFASDYK-----HFYCQYNEPS-YVKKLKLE---MLTAVANESN------TYEIVTELCEYAAN 384 (607)
Q Consensus 320 y~~L~~i~~l~~~~p~~~~~~~~-----~f~~~~~d~~-~Ik~~kL~---iL~~l~n~~N------~~~Iv~eL~~y~~~ 384 (607)
-.||..|..+++..|..+-.++. .+=|..+++. .||..+-. .|.+++++.- +..|++-|..|+.+
T Consensus 268 ~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~ 347 (675)
T KOG0212|consen 268 LKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSD 347 (675)
T ss_pred HHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhc
Confidence 99999999999998886655543 2336555554 45554433 4566665543 34899999999999
Q ss_pred CCHHHHHHHHHHHHHHHcccCCh-----HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHh
Q 007343 385 VDIPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (607)
Q Consensus 385 ~d~~~~~~~i~~I~~la~k~~~~-----~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~ 439 (607)
...+-+..+..-|..+-.++|+. ..+..+++.-++...+.|+..+..++..|..-
T Consensus 348 ~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 348 DREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred chHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 99999999999999999999862 46889999999988888888888888877653
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.72 E-value=1.3e-05 Score=88.93 Aligned_cols=332 Identities=14% Similarity=0.160 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHHhcCCCcchhhh----hhhhhccCCCchhHHHHHHHHHhhccCCChHHHHH-----HHHHHHHcCCCC
Q 007343 43 SKRELFKKVISYMTIGIDVSAVFG----EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLT-----INFLQRDCKDED 113 (607)
Q Consensus 43 ~k~~~l~kli~~~~~G~d~s~lf~----~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~-----iNtl~kDl~~~n 113 (607)
+..+..+.++.......+...+.+ .+...+.+++..+|+++--.+.++.+.+...+-++ ...+..-+.|+|
T Consensus 53 e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d 132 (503)
T PF10508_consen 53 EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPD 132 (503)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCc
Confidence 344555555555554444433333 33567889999999999888888887654432222 456677789999
Q ss_pred HHHHHHHHHHhhcCC-hHhhHHHH-----HHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc---CCCCchHHHHHhhc
Q 007343 114 PMIRGLALRSLCSLR-VANLVEYL-----VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLML 184 (607)
Q Consensus 114 ~~ir~lALr~l~~i~-~~e~~~~l-----~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~---~~~~~~~~L~~lLl 184 (607)
..+...|++++.++. .+...+.+ ...+.+++..+++.||..+.-.+.++.+.+|+.. ...++++.+...|
T Consensus 133 ~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL- 211 (503)
T PF10508_consen 133 LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL- 211 (503)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-
Confidence 999999999999984 34445556 6778888888899999999999999999988765 2356888888875
Q ss_pred CCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC--CCCh-hHHHHHHH---HHhccCCCChhH
Q 007343 185 NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK--EFSE-WAQCLVLE---LVAKYVPLDSNE 258 (607)
Q Consensus 185 ~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~--~~~~-w~qi~iL~---lL~~~~~~~~~~ 258 (607)
++.|..|..||+-.+.+++....+ ...+....++.+|++.+. +.+| +.-..+.. ++......+|..
T Consensus 212 ~~dDiLvqlnalell~~La~~~~g--------~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~ 283 (503)
T PF10508_consen 212 DSDDILVQLNALELLSELAETPHG--------LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQE 283 (503)
T ss_pred cCccHHHHHHHHHHHHHHHcChhH--------HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHH
Confidence 789999999999999999984332 122333346777777664 3355 44444333 333322223333
Q ss_pred H----HHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHH-------HHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 007343 259 I----FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQ-------VYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (607)
Q Consensus 259 ~----~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~-------~~~~l~~~L~~ll~s~~~ni~y~~L~~i~ 327 (607)
. ..+++.+...+.+.++.....|+-++..++.+.+. +.. .++.+.........++..++|-.+|.++.
T Consensus 284 v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G-~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~ 362 (503)
T PF10508_consen 284 VLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEG-KQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALA 362 (503)
T ss_pred HHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHH-HHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3 34566666777788887777777777777654332 111 11222222344455677899999999999
Q ss_pred HHHhhCCc-----c---ccc--------ccc-eeeeccCCC-HhHHHHHHHHHHHccCCCCHHHHH---HHHHHHhhc
Q 007343 328 ILVMRAPF-----I---FAS--------DYK-HFYCQYNEP-SYVKKLKLEMLTAVANESNTYEIV---TELCEYAAN 384 (607)
Q Consensus 328 ~l~~~~p~-----~---~~~--------~~~-~f~~~~~d~-~~Ik~~kL~iL~~l~n~~N~~~Iv---~eL~~y~~~ 384 (607)
.+....+. + ... ... .+.-..+.| .-+|.-.+.+|..+|...-...-+ .++.+|+.+
T Consensus 363 ~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 363 SILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 98755432 1 110 001 111112333 448888888888888776433322 345567654
No 24
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=6.4e-05 Score=86.76 Aligned_cols=426 Identities=15% Similarity=0.168 Sum_probs=265.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHHhh-CCCCcC--CCCchHHH
Q 007343 104 FLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHI-SAPTCI--DADFPPTL 179 (607)
Q Consensus 104 tl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L-~d~~~~VRK~A~lal~kl~~~-~p~~~~--~~~~~~~L 179 (607)
.|...+.+|+-.+|.-|=+++.++-..+= +.+.+...+ ...+|.||.-|+.=+-|+... .+..-. ...+...|
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~l 84 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSL 84 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 34556677877889999988887633221 444444444 446899999998888887654 333210 01222333
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCC----CC
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP----LD 255 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~----~~ 255 (607)
...+..++-+.|+..-.-++.+|.+.... +.. +..+.-|.+..+..++-.+-..+.+|..+.. ..
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~~l~---e~W--------Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARNDLP---EKW--------PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccc---cch--------HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 33345789999999989999999876432 112 2356677778888999888888888876532 12
Q ss_pred hhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcc---hh-H--HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Q 007343 256 SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT---DV-H--QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (607)
Q Consensus 256 ~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~---~~-~--~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l 329 (607)
.....++...+...+...+..|...|++.+..+....+ +. + ..++-++.+.+..++..++....--+|+.+..+
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 22233556666666666665599999998776554322 11 1 122333444455666666666678899999999
Q ss_pred HhhCCccccccccee--ee-----ccCCCHhHHHHHHHHHHHccCC------CC---HHHHHHHHHHHhhcC--C-----
Q 007343 330 VMRAPFIFASDYKHF--YC-----QYNEPSYVKKLKLEMLTAVANE------SN---TYEIVTELCEYAANV--D----- 386 (607)
Q Consensus 330 ~~~~p~~~~~~~~~f--~~-----~~~d~~~Ik~~kL~iL~~l~n~------~N---~~~Iv~eL~~y~~~~--d----- 386 (607)
+...|.++.+|+... || ..+=+..+|..+|++|..+..- .+ ...++.-++.-.++. |
T Consensus 234 ~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~ 313 (1075)
T KOG2171|consen 234 LESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN 313 (1075)
T ss_pred HhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence 999999999988632 22 2223467999999999987532 11 223333333333321 1
Q ss_pred ---------HHHHHHHHHHHHHHHcccCCh---HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchh----HHHH
Q 007343 387 ---------IPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHD----CIAV 450 (607)
Q Consensus 387 ---------~~~~~~~i~~I~~la~k~~~~---~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~----~~~~ 450 (607)
..-.+-+.++|-++|.+.+.. .-.++.+-.++....-+-.......+.-+....++.-.. ++.+
T Consensus 314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 114567888999999998752 456777777777766555555556666665554442111 1122
Q ss_pred HHhhhhccCCchHHHHHHHHHHhcccCCCCC------hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCc-hhHHH
Q 007343 451 VGSISSQNVQEPKAKAALIWMLGEYSQDMQD------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQKV 523 (607)
Q Consensus 451 l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~------~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~-~~~~~ 523 (607)
+.+.+ .-.+|++|-+++..+|+.+..+.. ...++..++........+.|+...-.|+.-++-.+|+ ..++.
T Consensus 394 Vl~~l--~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY 471 (1075)
T KOG2171|consen 394 VLNGL--NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY 471 (1075)
T ss_pred HHhhc--CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 22221 224788999999999999977642 1122333343333333378999888888888877764 34444
Q ss_pred HHH----HHHHhhcCCChhHHhHHHH
Q 007343 524 LGA----ALAAGLADFHQDVHDRALF 545 (607)
Q Consensus 524 ~~~----~l~~~~~d~~~dvrdRA~~ 545 (607)
+.. .|.....+..+.||..|.-
T Consensus 472 Ld~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 472 LDGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 433 4455667788999988763
No 25
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=7.9e-05 Score=82.54 Aligned_cols=405 Identities=13% Similarity=0.164 Sum_probs=229.9
Q ss_pred cCCCCHHHHHHHHHHhhc-CChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCC
Q 007343 109 CKDEDPMIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP 187 (607)
Q Consensus 109 l~~~n~~ir~lALr~l~~-i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~ 187 (607)
|.+.+.-...-|++.+-. |...+=+..+.|+|.+....+|+.|||-..+-++|.....|+.-. =-+..+++. |.|+
T Consensus 44 LdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~-L~Dp 120 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKA-LKDP 120 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhh-hcCC
Confidence 345555555555544332 322233677899999999999999999999999999999998752 247788888 4999
Q ss_pred ChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 007343 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLE 267 (607)
Q Consensus 188 d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~ 267 (607)
|+.+++.|+.+|..|.-. .+.+=++..+-+...+++|+..-..-..+.++..-++++...+.+.+.
T Consensus 121 N~LiRasALRvlSsIRvp--------------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~ 186 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRVP--------------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK 186 (968)
T ss_pred cHHHHHHHHHHHHhcchh--------------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH
Confidence 999999999999988421 111111222334567999999888777777766677777778999999
Q ss_pred HHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC---Cccccccc--c
Q 007343 268 DRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA---PFIFASDY--K 342 (607)
Q Consensus 268 ~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~---p~~~~~~~--~ 342 (607)
.+|...++-|+=+|+-+|=.+.+..-++...-+.|+ .+++-+-+.=-|-+.+..+.+-+... |....... .
T Consensus 187 ~LLaD~splVvgsAv~AF~evCPerldLIHknyrkl----C~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n 262 (968)
T KOG1060|consen 187 KLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKL----CRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDN 262 (968)
T ss_pred HHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHH----HhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccC
Confidence 999999999998888888777765333221223333 34443322223666666666665442 32111100 0
Q ss_pred eeeeccCCC-HhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhc
Q 007343 343 HFYCQYNEP-SYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME 421 (607)
Q Consensus 343 ~f~~~~~d~-~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~ 421 (607)
-+-|...+. .++|.= .++....+.+++-..-.+.+.++..+-...++.-.+|-+. +...++..|+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~P-------~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-~~~~i~kaLvrLLrs~ 334 (968)
T KOG1060|consen 263 GRSCNLKDKYNEIRTP-------YVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-QVTKIAKALVRLLRSN 334 (968)
T ss_pred cccccccccccccCCC-------cccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-HHHHHHHHHHHHHhcC
Confidence 111211000 011110 2333334444444444455555555555555555555332 2345666677766654
Q ss_pred C--chhhHHHHHHHHHHHHhCCCCchhH------------------HHHHHhhh------------hccCCch--HHHHH
Q 007343 422 K--DYVTAEALVLVKDLLRKYPQWSHDC------------------IAVVGSIS------------SQNVQEP--KAKAA 467 (607)
Q Consensus 422 ~--~~v~~e~i~~i~~i~~~~p~~~~~~------------------~~~l~~l~------------~~~~~~~--~~~~~ 467 (607)
. .|++= ..|..+..+.|.+++-. +.++..+. ..++..+ +.-++
T Consensus 335 ~~vqyvvL---~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~ 411 (968)
T KOG1060|consen 335 REVQYVVL---QNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAA 411 (968)
T ss_pred CcchhhhH---HHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHH
Confidence 3 22221 22222333333322110 11122211 1122222 25555
Q ss_pred HHHHHhcccCCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhHHhHHHHH
Q 007343 468 LIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFY 546 (607)
Q Consensus 468 ~iwilGEy~~~i~~-~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dvrdRA~~y 546 (607)
.+--||-++..+.. ++..+.-++......+ ..|-.+....+=++.-+.|.+-..++.++.+.. |+-.-=+-||...
T Consensus 412 aV~AiGrCA~~~~sv~~tCL~gLv~Llsshd-e~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll--dti~vp~ARA~Ii 488 (968)
T KOG1060|consen 412 AVKAIGRCASRIGSVTDTCLNGLVQLLSSHD-ELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL--DTILVPAARAGII 488 (968)
T ss_pred HHHHHHHHHHhhCchhhHHHHHHHHHHhccc-chhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh--hhhhhhhhhceee
Confidence 66677888777655 5667777777776665 666666666666666666654433444443332 3222235566666
Q ss_pred HH
Q 007343 547 HR 548 (607)
Q Consensus 547 ~~ 548 (607)
|-
T Consensus 489 WL 490 (968)
T KOG1060|consen 489 WL 490 (968)
T ss_pred ee
Confidence 53
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=3.9e-05 Score=83.43 Aligned_cols=452 Identities=14% Similarity=0.133 Sum_probs=256.4
Q ss_pred HHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC--CCCchHHHHHhhcCCCChhHHHHH
Q 007343 118 GLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANC 195 (607)
Q Consensus 118 ~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~--~~~~~~~L~~lLl~D~d~~V~~~a 195 (607)
+.||-.|+++-..++.+.+.|.++..|.+....||-++++|++.+..-.=+.+. -+++++.+.++| +|.-|.|++-+
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L-~DKkplVRsIT 454 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLL-DDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHh-ccCccceeeee
Confidence 467999999999999999999999999999999999999999998653322221 146789999985 99999998877
Q ss_pred HHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHH-------
Q 007343 196 LSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED------- 268 (607)
Q Consensus 196 ~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~------- 268 (607)
+=.|....+---. -.....+ ++.+..|++.+-+.+-|.|......++.+--+-.++.-..++.+..
T Consensus 455 CWTLsRys~wv~~------~~~~~~f-~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQ------DSRDEYF-KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG 527 (885)
T ss_pred eeeHhhhhhhHhc------CChHhhh-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 6666655432100 0011112 4567788888889999999998888887742211222122222221
Q ss_pred HhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHH---HHhccCCchhHHHHHHHHHHHHhhCCcccccccc---
Q 007343 269 RLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLL---TLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK--- 342 (607)
Q Consensus 269 ~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~---~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~--- 342 (607)
..|+.|--|+|.|+.++-.-... .--+...++.+.+||+ .+++++|.++ |=-|+.+..+++.-..-|.|+..
T Consensus 528 kYQ~KNLlILYDAIgtlAdsvg~-~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy 605 (885)
T KOG2023|consen 528 KYQKKNLLILYDAIGTLADSVGH-ALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVY 605 (885)
T ss_pred HHhhcceehHHHHHHHHHHHHHH-hcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHH
Confidence 23578888999999887542211 0011234566677775 3566777774 44455555555432222222111
Q ss_pred ------------eeeeccCCCHh------HHHHHHHHHHHccCC--CCHHH------HHHHHHHHhhcCCHHHHHHHHHH
Q 007343 343 ------------HFYCQYNEPSY------VKKLKLEMLTAVANE--SNTYE------IVTELCEYAANVDIPIARESIRA 396 (607)
Q Consensus 343 ------------~f~~~~~d~~~------Ik~~kL~iL~~l~n~--~N~~~------Iv~eL~~y~~~~d~~~~~~~i~~ 396 (607)
..-+..+||.+ .-..+||++..|+-. +.++. |++=|.+.+.+.-++.|.-+-.-
T Consensus 606 ~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FAL 685 (885)
T KOG2023|consen 606 QRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFAL 685 (885)
T ss_pred HHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHH
Confidence 00111233322 223568888776421 12222 44445678888889999988888
Q ss_pred HHHHHcccCC-hHHHHHHHHHhhhhc----CchhhHHHHHHHHHHHHh-CCCCchhHHHHHHhhh---hccCCchHHHHH
Q 007343 397 VGKIALQQYD-VNAIVDRLLQFLEME----KDYVTAEALVLVKDLLRK-YPQWSHDCIAVVGSIS---SQNVQEPKAKAA 467 (607)
Q Consensus 397 I~~la~k~~~-~~~~v~~ll~ll~~~----~~~v~~e~i~~i~~i~~~-~p~~~~~~~~~l~~l~---~~~~~~~~~~~~ 467 (607)
+|.++..+++ +..+++-++.++... +-.+.+-++-.+-.|..+ .++.+.+.-.++.++. ............
T Consensus 686 LGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllEN 765 (885)
T KOG2023|consen 686 LGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLEN 765 (885)
T ss_pred HHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHh
Confidence 9998866543 333444334333322 222334444444444333 2233333333444443 112222333444
Q ss_pred HHHHHhcccCCCCC--hH---HHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhHHhH
Q 007343 468 LIWMLGEYSQDMQD--AP---YILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDR 542 (607)
Q Consensus 468 ~iwilGEy~~~i~~--~~---~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dvrdR 542 (607)
.+--+|--|...++ +| ...+.-+.+...-.+.+-|-..-.-+.++...+|...-.-+..+.+....-.+|+ -+-
T Consensus 766 tAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~-~~l 844 (885)
T KOG2023|consen 766 TAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPE-DDL 844 (885)
T ss_pred hhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChH-HHH
Confidence 45556666655543 22 2233333332222225667777777888888888765444444444433335665 555
Q ss_pred HHHHHHHccCCHHHHhhhcCCCCCCcccccccCChHHHHHHHhh
Q 007343 543 ALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDE 586 (607)
Q Consensus 543 A~~y~~Ll~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~l~~~ 586 (607)
.-+++.+|....+..- +-.+..|.+.++|.++++|-..
T Consensus 845 ~~~f~kiL~g~k~qvg------~~nW~~~~~qf~P~~~erl~a~ 882 (885)
T KOG2023|consen 845 RDEFYKILQGFKNQVG------KINWQRFSEQFPPPLKERLQAF 882 (885)
T ss_pred HHHHHHHHHHHHHHhh------hhhHHHHhhcCChhHHHHHHHH
Confidence 5567776664322111 1112336677888888877543
No 27
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00018 Score=79.13 Aligned_cols=345 Identities=14% Similarity=0.116 Sum_probs=229.3
Q ss_pred HHHhcCCCcchhhhhhhh-hccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC--Ch
Q 007343 53 SYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RV 129 (607)
Q Consensus 53 ~~~~~G~d~s~lf~~vi~-l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i--~~ 129 (607)
.-.--+.|+.-+.+.-++ -+.|+|...=.++.-.++.+. .||++.-..|-+..=|++.-||+|--|+-.|-.+ .-
T Consensus 98 qSf~~~tdvlmL~tn~~rkdl~S~n~ye~giAL~GLS~fv--TpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY 175 (877)
T KOG1059|consen 98 QSFHDDTDVLMLTTNLLRKDLNSSNVYEVGLALSGLSCIV--TPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY 175 (877)
T ss_pred HhhcCCccHHHHHHHHHHHHhccCccchhhheeccccccc--CchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh
Confidence 333345666655555553 344667666666666777765 6999999999999999999999999999998876 66
Q ss_pred HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc
Q 007343 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (607)
Q Consensus 130 ~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~ 209 (607)
||-+...+|-++.-|.|++|-|..+|+-.+.-+.+++|.-+. .+-+.+.++|-..+|--|+.-.+-++..+...+|..
T Consensus 176 PeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL 253 (877)
T KOG1059|consen 176 PEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL 253 (877)
T ss_pred hHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--cccHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence 899999999999999999999999999999999999999873 578888888756677788888888888877766643
Q ss_pred chhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhc-----cCCCChhHHHHHHHHHHHHhccCchHHHHHHHHH
Q 007343 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK-----YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKV 284 (607)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~-----~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~ 284 (607)
...+.+....+++......|+ -..++.+-. -.|.+...+.-.++.+..++..+.+..-|=+..+
T Consensus 254 gKKLieplt~li~sT~AmSLl-----------YECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 254 GKKLIEPITELMESTVAMSLL-----------YECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred hhhhhhHHHHHHHhhHHHHHH-----------HHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 322222222222211111111 111111111 1233334444455666666777777777777777
Q ss_pred HHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCC--cccccccceeeeccCCCHhHHHHHHHHH
Q 007343 285 FLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP--FIFASDYKHFYCQYNEPSYVKKLKLEML 362 (607)
Q Consensus 285 i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p--~~~~~~~~~f~~~~~d~~~Ik~~kL~iL 362 (607)
+..+.+.++.. +..-...+++.|.+.|+++|.-||..+.-++.+.- ++++.=+.++ ...|++..|..-+.-+
T Consensus 323 m~KI~ktHp~~----Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~--~~ae~t~yrdell~~I 396 (877)
T KOG1059|consen 323 MSKILKTHPKA----VQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHV--EKAEGTNYRDELLTRI 396 (877)
T ss_pred HHHHhhhCHHH----HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HhccchhHHHHHHHHH
Confidence 77776655542 22234456788889999999999999988887641 1222211222 2345567888888888
Q ss_pred HHccCCCCHHHHHHHHHHHhhcC--------CHHHHHHHHHHHHHHHcccCCh-HHHHHHHHHhhhh
Q 007343 363 TAVANESNTYEIVTELCEYAANV--------DIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEM 420 (607)
Q Consensus 363 ~~l~n~~N~~~Iv~eL~~y~~~~--------d~~~~~~~i~~I~~la~k~~~~-~~~v~~ll~ll~~ 420 (607)
..+|..+|..-|.+ .+|-.+. ..+--..+-.-|-.++.|.+.. ..-|+.+..++..
T Consensus 397 I~iCS~snY~~Itd--FEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~ 461 (877)
T KOG1059|consen 397 ISICSQSNYQYITD--FEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDD 461 (877)
T ss_pred HHHhhhhhhhhhhh--HHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhc
Confidence 99999999887665 2222221 1222245555666778888775 3467777777763
No 28
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=2.9e-05 Score=83.89 Aligned_cols=291 Identities=16% Similarity=0.161 Sum_probs=199.5
Q ss_pred CCChHHHHHHHHHHHHcCCC-CHHHHHHHHHHhhcCChHhhHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHHhhCC---
Q 007343 93 VNPDLALLTINFLQRDCKDE-DPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISA--- 167 (607)
Q Consensus 93 ~~~el~~L~iNtl~kDl~~~-n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L-~d~~~~VRK~A~lal~kl~~~~p--- 167 (607)
.+++..+-++..|+|-+... ||-+. .++.+ | ++|.+..+| .+.+|.++-.||-|+..+.....
T Consensus 78 ~~~~~q~~a~~~~rkllS~~~~ppi~-~vi~~-G----------~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 78 DDPQQQLTATQAFRKLLSKERNPPID-EVIQS-G----------VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCHH-HHHHc-C----------cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 45555677788888887653 44332 33333 2 334444555 57789999999999999987443
Q ss_pred CCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCCh-hHHHHHHH
Q 007343 168 PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSE-WAQCLVLE 246 (607)
Q Consensus 168 ~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~-w~qi~iL~ 246 (607)
..+.+.+.++.+..++ ..++..|.-.|+-+|..|..+.|. |++ ..+...++..|+..+...++ -....+..
T Consensus 146 ~~vv~agavp~fi~Ll-~s~~~~v~eQavWALgNIagds~~-----~Rd--~vl~~g~l~pLl~~l~~~~~~~~lRn~tW 217 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLL-SSPSADVREQAVWALGNIAGDSPD-----CRD--YVLSCGALDPLLRLLNKSDKLSMLRNATW 217 (514)
T ss_pred cccccCCchHHHHHHh-cCCcHHHHHHHHHHHhccccCChH-----HHH--HHHhhcchHHHHHHhccccchHHHHHHHH
Confidence 3455678999999984 899999999999999999877653 444 23444467778887766665 23334555
Q ss_pred HHhccCC----CCh-hHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHH
Q 007343 247 LVAKYVP----LDS-NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSY 320 (607)
Q Consensus 247 lL~~~~~----~~~-~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y 320 (607)
.|+.++. ..+ +....+++.+..++.|.++-|.-.|..++-+++....+-.+.+++ .+.+-|+.+|...+++++-
T Consensus 218 ~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~ 297 (514)
T KOG0166|consen 218 TLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVT 297 (514)
T ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccccc
Confidence 6665543 222 566789999999999999999999999998887544433333333 3445567788888888998
Q ss_pred HHHHHHHHHHhhCCc----ccc-cccceee-ecc-CCCHhHHHHHHHHHHHccCCCCHH--------HHHHHHHHHhhcC
Q 007343 321 AVLSHLHILVMRAPF----IFA-SDYKHFY-CQY-NEPSYVKKLKLEMLTAVANESNTY--------EIVTELCEYAANV 385 (607)
Q Consensus 321 ~~L~~i~~l~~~~p~----~~~-~~~~~f~-~~~-~d~~~Ik~~kL~iL~~l~n~~N~~--------~Iv~eL~~y~~~~ 385 (607)
-+|+.+--|+.-.-. ++. .-+.+|- +.. +....||..+.=++..++. .|.+ .++..|.+-+...
T Consensus 298 PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~~ 376 (514)
T KOG0166|consen 298 PALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQTA 376 (514)
T ss_pred HHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhcc
Confidence 899988776543211 000 0111111 122 3345699999999999875 3432 3567778888888
Q ss_pred CHHHHHHHHHHHHHHHccc
Q 007343 386 DIPIARESIRAVGKIALQQ 404 (607)
Q Consensus 386 d~~~~~~~i~~I~~la~k~ 404 (607)
|...++++.-+|+.++..-
T Consensus 377 ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 377 EFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred chHHHHHHHHHHHhhcccC
Confidence 9999999999999988653
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=0.00078 Score=78.08 Aligned_cols=514 Identities=13% Similarity=0.120 Sum_probs=284.1
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHc-CCCCHHHHHHHH---HHhhcCCh----HhhHHHH
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDC-KDEDPMIRGLAL---RSLCSLRV----ANLVEYL 136 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl-~~~n~~ir~lAL---r~l~~i~~----~e~~~~l 136 (607)
|-+.+.-+.|+|-..+|=.==.+.+.+...+ +.+.|..=+ .+.||.+|.+|. |-+..=.. .+.-+.+
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 4555555556666667766666666665555 223333323 357888898884 33332222 3333444
Q ss_pred HHHHhhhc-CCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhh
Q 007343 137 VGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (607)
Q Consensus 137 ~~~i~~~L-~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~ 215 (607)
-..+..++ +.+.+.||||-+-.+.-+.+..-+. .=+++++.|... .+++|+..+-.|+..|..+...-+.- ..+
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~-~~S~~~~~rE~al~il~s~~~~~~~~---~~~ 155 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQS-TKSPNPSLRESALLILSSLPETFGNT---LQP 155 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHH-hcCCCcchhHHHHHHHHhhhhhhccc---cch
Confidence 44444433 4568999999999999998754221 113344455566 47899999999999998876543221 000
Q ss_pred hHhhhcchHHHHHHH-hhcCCCChhHHHHHHHHHhccCCC---ChhHHHH-------HHHHHHHHhccCchHHHHHHHHH
Q 007343 216 EREALISKPVIYYLL-NRIKEFSEWAQCLVLELVAKYVPL---DSNEIFD-------IMNLLEDRLQHANGAVVLSTIKV 284 (607)
Q Consensus 216 ~~~~li~~~~~~~Ll-~~l~~~~~w~qi~iL~lL~~~~~~---~~~~~~~-------il~~l~~~L~~~n~aVv~~ai~~ 284 (607)
+ + . -+..|+ +.+.+.+--..+..++.+..|.+. ++.+... +++++.+.++..+....-++..+
T Consensus 156 ---~-~-~-~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~ 229 (1075)
T KOG2171|consen 156 ---H-L-D-DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEA 229 (1075)
T ss_pred ---h-H-H-HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence 0 0 1 123333 345565433888888888876533 3444332 44455555666666666666666
Q ss_pred HHhhcCCcchhHHHHHHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhCCccccccc---cee-------ee------
Q 007343 285 FLHLTLSMTDVHQQVYERIKAPLLTLVS--SGSPEQSYAVLSHLHILVMRAPFIFASDY---KHF-------YC------ 346 (607)
Q Consensus 285 i~~l~~~~~~~~~~~~~~l~~~L~~ll~--s~~~ni~y~~L~~i~~l~~~~p~~~~~~~---~~f-------~~------ 346 (607)
+..+....+.+-...++.+...-..... +-++.+|-.||+.|..++...|.....+- ..+ .|
T Consensus 230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 230 LIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 6666554443322222323222222222 24677899999999988877554221110 000 00
Q ss_pred --------c---cCCCHhHHHHHHHHHHHccC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh-----HH
Q 007343 347 --------Q---YNEPSYVKKLKLEMLTAVAN-ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-----NA 409 (607)
Q Consensus 347 --------~---~~d~~~Ik~~kL~iL~~l~n-~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-----~~ 409 (607)
. +++|..+....||-|..=-. +.=+..+++-+..++++.+...+..+..+|+.+++--++. ..
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~ 389 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK 389 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0 12355677777777665333 3345566677778999999999999999999999976652 34
Q ss_pred HHHHHHHhhhhcCchhhHHHHHHHHHHHHhC-CCCchhHHH----HHHhhhhccCCchHHHHHHHHHHhcccCCCCC---
Q 007343 410 IVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWSHDCIA----VVGSISSQNVQEPKAKAALIWMLGEYSQDMQD--- 481 (607)
Q Consensus 410 ~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~-p~~~~~~~~----~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~--- 481 (607)
+++..+..+.....-|..-+...+-++-... |++++..-. .+-.. .++-..+++.+.++--+=.|.+..+.
T Consensus 390 Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~-ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 390 ILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIAL-LDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHH-hcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 6666677777766677777777777665432 333322111 12122 24555666644333222222222221
Q ss_pred ---hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHH-------HHHHHHHHhhcCCChhHHhHHHHHHHHcc
Q 007343 482 ---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQK-------VLGAALAAGLADFHQDVHDRALFYHRLLQ 551 (607)
Q Consensus 482 ---~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~-------~~~~~l~~~~~d~~~dvrdRA~~y~~Ll~ 551 (607)
-+.+++....-....+++.||.+.+||++-......+...+ .+.++|+.+..+..-++|-...+...++.
T Consensus 469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 23445533333333334999999999998887644322222 23333443333345777777777777776
Q ss_pred CCH------HHHhhhcCCCCCCcccccccCChHHHHHHHhhccchhhhhcc
Q 007343 552 YNV------SVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQK 596 (607)
Q Consensus 552 ~~~------~~~~~i~~~~~p~~~~~~~~~~~~~~~~l~~~~~tls~iy~~ 596 (607)
.-. +.+.+++.-..-.-... -+.++....-++.-++-+..||++
T Consensus 549 ~AVGke~F~~~a~eliqll~~~~~~~-~~~dd~~~sy~~~~warmc~ilg~ 598 (1075)
T KOG2171|consen 549 RAVGKEKFLPLAEELIQLLLELQGSD-QDDDDPLRSYMIAFWARMCRILGD 598 (1075)
T ss_pred HHhhhhhhhHhHHHHHHHHHhhcccc-hhhccccHHHHHHHHHHHHHHhch
Confidence 521 23444432111000001 112334455556666666666665
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.36 E-value=2.6e-06 Score=70.96 Aligned_cols=87 Identities=29% Similarity=0.298 Sum_probs=69.7
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHH
Q 007343 102 INFLQRDC-KDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (607)
Q Consensus 102 iNtl~kDl-~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~ 180 (607)
+..+.+-+ +|+|+.+|..|++++|.++.++..+ .+...++|++|.||..|+.++.++.. ++.++.|.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~----~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~~L~ 68 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAIP----ALIELLKDEDPMVRRAAARALGRIGD--------PEAIPALI 68 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHH----HHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHH----HHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHH
Confidence 35677778 8999999999999999999886655 45566799999999999999998842 34678888
Q ss_pred HhhcCCCChhHHHHHHHHHH
Q 007343 181 HLMLNDPDPQVVANCLSALQ 200 (607)
Q Consensus 181 ~lLl~D~d~~V~~~a~~~L~ 200 (607)
+++.+|++..|..+|+.+|.
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 88656677788888887763
No 31
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00022 Score=77.86 Aligned_cols=409 Identities=17% Similarity=0.205 Sum_probs=231.6
Q ss_pred hhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHH-------HHhhcCChHhhHHHHHHHHhh
Q 007343 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL-------RSLCSLRVANLVEYLVGPLGL 142 (607)
Q Consensus 70 ~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lAL-------r~l~~i~~~e~~~~l~~~i~~ 142 (607)
+...|+|-..++-+--.+.++.. .||+.=-.| -+.-++++.+..+|++|= |.=.+-..++...++-..+.+
T Consensus 20 k~s~Spn~~~~~~~~~~leq~~~-~pdfnnYL~-~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yiKs~~l~ 97 (885)
T KOG2023|consen 20 KNSQSPNSETRNNVQEKLEQFNL-FPDFNNYLI-YILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYIKSECLH 97 (885)
T ss_pred HhccCCChHHHHHHHHHHHHHhc-ccchhceee-EEEecccccchhHHHHhhhhHhccccccccCCChHHHHHHHHHHHh
Confidence 33345555555555555444433 344311000 112233444445555552 222222345778888888889
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcc
Q 007343 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (607)
Q Consensus 143 ~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~ 222 (607)
++.|++|.||-+.=+-+..+.....-. .-++..+.|.++| +.+|....-.|+.+|..|++.+++. +
T Consensus 98 ~lgd~~~lIr~tvGivITTI~s~~~~~-~wpelLp~L~~~L-~s~d~n~~EgA~~AL~KIcEDsa~~-----------l- 163 (885)
T KOG2023|consen 98 GLGDASPLIRATVGIVITTIASTGGLQ-HWPELLPQLCELL-DSPDYNTCEGAFGALQKICEDSAQF-----------L- 163 (885)
T ss_pred hccCchHHHHhhhhheeeeeecccccc-cchhHHHHHHHHh-cCCcccccchhHHHHHHHHhhhHHH-----------H-
Confidence 999999999988776666665432111 1145567777874 7778788888999999998764321 0
Q ss_pred hHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcch-hHHHHHH
Q 007343 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYE 301 (607)
Q Consensus 223 ~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~-~~~~~~~ 301 (607)
. ++|. . .| ..-+++.+....+|.+|.+.-.|+.|+=++-...+. +.. -++
T Consensus 164 --------d-----s~~~--------~--rp-----l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~-~iD 214 (885)
T KOG2023|consen 164 --------D-----SDVL--------T--RP-----LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYV-HID 214 (885)
T ss_pred --------h-----hhcc--------c--Cc-----hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHH-HHH
Confidence 0 0111 0 01 113556666677788887776666665443332221 111 123
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccccccccee--e-e-c-cCCCHhHHHHHHHHHHHccCCCCHHHHHH
Q 007343 302 RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF--Y-C-Q-YNEPSYVKKLKLEMLTAVANESNTYEIVT 376 (607)
Q Consensus 302 ~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f--~-~-~-~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~ 376 (607)
+.-..|..+-++.+||+|-.+-+++..++..+|+-+.+|+... | . + .+-+..|..++-|-..++|...=...++.
T Consensus 215 ~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~ 294 (885)
T KOG2023|consen 215 KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQ 294 (885)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHH
Confidence 3334455566789999999999999999999999888988632 1 1 2 23346699999999999998875555443
Q ss_pred HH--------H---HHhh----------------cCCHH-------------------------------------HHHH
Q 007343 377 EL--------C---EYAA----------------NVDIP-------------------------------------IARE 392 (607)
Q Consensus 377 eL--------~---~y~~----------------~~d~~-------------------------------------~~~~ 392 (607)
.- + .|.. +.+++ +|+-
T Consensus 295 p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkC 374 (885)
T KOG2023|consen 295 PYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKC 374 (885)
T ss_pred HHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhc
Confidence 32 1 1110 00111 2333
Q ss_pred HHHHHHHHHcccCChHHHHHHHHHhhhhc---CchhhHHH-HHHHHHHHHh-----CCCCchhHHHHHHhhhhccCCchH
Q 007343 393 SIRAVGKIALQQYDVNAIVDRLLQFLEME---KDYVTAEA-LVLVKDLLRK-----YPQWSHDCIAVVGSISSQNVQEPK 463 (607)
Q Consensus 393 ~i~~I~~la~k~~~~~~~v~~ll~ll~~~---~~~v~~e~-i~~i~~i~~~-----~p~~~~~~~~~l~~l~~~~~~~~~ 463 (607)
+..++..+|.-|++ .++++++-+++.. .+-+..|+ +-++-.|... +|.+- ..+..+-.++.+ .-|-
T Consensus 375 SAAaLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~D--Kkpl 449 (885)
T KOG2023|consen 375 SAAALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDD--KKPL 449 (885)
T ss_pred cHHHHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhcc--Cccc
Confidence 44455555544433 2455555555432 12233333 2344445443 23322 122233333312 2466
Q ss_pred HHHHHHHHHhcccCCCCC-hH-----HHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 007343 464 AKAALIWMLGEYSQDMQD-AP-----YILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALA 529 (607)
Q Consensus 464 ~~~~~iwilGEy~~~i~~-~~-----~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~ 529 (607)
+|...+|-+|.|+..+-. +. .+++.+++...+.. ..||-+.-+|++-+==...++.-+.+.++|+
T Consensus 450 VRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N-K~VQEAAcsAfAtleE~A~~eLVp~l~~IL~ 520 (885)
T KOG2023|consen 450 VRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN-KKVQEAACSAFATLEEEAGEELVPYLEYILD 520 (885)
T ss_pred eeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 788889999999987743 22 35666677777777 8899998888887754433344444445444
No 32
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=9.7e-05 Score=81.47 Aligned_cols=326 Identities=14% Similarity=0.182 Sum_probs=170.9
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhh
Q 007343 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (607)
Q Consensus 136 l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~ 215 (607)
+...+++-|+|||.|||-...--+.|+ ..||.+ +.+.+.+..+| ..+++-|+.||+.++.+|.+... .+.|
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL--kE~ELl--epl~p~Iracl-eHrhsYVRrNAilaifsIyk~~~----~L~p 170 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL--KEPELL--EPLMPSIRACL-EHRHSYVRRNAILAIFSIYKNFE----HLIP 170 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc--CcHHHh--hhhHHHHHHHH-hCcchhhhhhhheeehhHHhhhh----hhcC
Confidence 445678889999999999988877777 478887 56999999995 89999999999999999987521 1223
Q ss_pred hHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchH---HHHHHHHHHHhhcCCc
Q 007343 216 EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGA---VVLSTIKVFLHLTLSM 292 (607)
Q Consensus 216 ~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~a---Vv~~ai~~i~~l~~~~ 292 (607)
+... ++.+.+.+ +.+|-..-...=.|- ..+++.+.+.+........+-|+. |+.|-++-.++ ..
T Consensus 171 Dape-----Li~~fL~~--e~DpsCkRNAFi~L~---~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~---~~ 237 (948)
T KOG1058|consen 171 DAPE-----LIESFLLT--EQDPSCKRNAFLMLF---TTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL---AN 237 (948)
T ss_pred ChHH-----HHHHHHHh--ccCchhHHHHHHHHH---hcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh---cC
Confidence 3222 33343332 344444433332222 235666666555555555555544 45554444443 22
Q ss_pred chhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccc---eeeeccCCCHhHHHHHHHHHHHccCCC
Q 007343 293 TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK---HFYCQYNEPSYVKKLKLEMLTAVANES 369 (607)
Q Consensus 293 ~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~---~f~~~~~d~~~Ik~~kL~iL~~l~n~~ 369 (607)
+..+... ...+..||+++++.++|-+--.+..+ ...|..+..-.. .+..+.+|.. +|..-||-|+.+. .
T Consensus 238 p~~~~~~----i~~i~~lL~stssaV~fEaa~tlv~l-S~~p~alk~Aa~~~i~l~~kesdnn-vklIvldrl~~l~--~ 309 (948)
T KOG1058|consen 238 PAEKARY----IRCIYNLLSSTSSAVIFEAAGTLVTL-SNDPTALKAAASTYIDLLVKESDNN-VKLIVLDRLSELK--A 309 (948)
T ss_pred HHHhhHH----HHHHHHHHhcCCchhhhhhcceEEEc-cCCHHHHHHHHHHHHHHHHhccCcc-hhhhhHHHHHHHh--h
Confidence 3332222 33455677777888888765554433 233333222111 1122233333 6666666666664 2
Q ss_pred CHHHHHHHH----HHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHH-hhhhcCc------hhhHHHHHHHHHHHH
Q 007343 370 NTYEIVTEL----CEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQ-FLEMEKD------YVTAEALVLVKDLLR 438 (607)
Q Consensus 370 N~~~Iv~eL----~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~-ll~~~~~------~v~~e~i~~i~~i~~ 438 (607)
+-+.|+.+| +..+...|-+++++.+.-.-.++... ++...++++-+ +.+..+. ...+..+..+.--..
T Consensus 310 ~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr-Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav 388 (948)
T KOG1058|consen 310 LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR-NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAV 388 (948)
T ss_pred hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhh
Confidence 223333333 33444556667776655444443321 22334444432 2222211 122333333444445
Q ss_pred hCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCC-hHHHHHHHHHhhh
Q 007343 439 KYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-APYILESLTENWE 494 (607)
Q Consensus 439 ~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~-~~~~l~~l~~~f~ 494 (607)
++|+.....+..+-+.+ .-.++.+-..++-++.|--+..++ ...+++.+.+.|.
T Consensus 389 ~Fp~~aatvV~~ll~fi--sD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~ 443 (948)
T KOG1058|consen 389 KFPEVAATVVSLLLDFI--SDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFP 443 (948)
T ss_pred cChHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhh
Confidence 67765443322222221 112344444455566666665554 3345555555553
No 33
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=0.0017 Score=70.46 Aligned_cols=283 Identities=13% Similarity=0.112 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHhcCCC--c-----chhhhhhhhhcc-CCCchhHHHHHHHHHhhccCCChHHHH-----HHHHHHHH
Q 007343 42 DSKRELFKKVISYMTIGID--V-----SAVFGEMVMCSA-TSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQRD 108 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d--~-----s~lf~~vi~l~~-s~~~~~Krl~YL~l~~~~~~~~el~~L-----~iNtl~kD 108 (607)
..+..+..+.--+...+.+ + +...+..|+++. .++..++--.=-++++.+...+|..-. ++..|.+-
T Consensus 81 ~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~L 160 (514)
T KOG0166|consen 81 QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQL 160 (514)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHH
Confidence 3455555444444444442 1 233455567775 455777777777888888866664333 35668899
Q ss_pred cCCCCHHHHHHHHHHhhcCCh--HhhHHHH-----HHHHhhhcCCCCh-HHHHHHHHHHHHHHhhC-CCCc--CCCCchH
Q 007343 109 CKDEDPMIRGLALRSLCSLRV--ANLVEYL-----VGPLGLGLKDNNS-YVRTVAVIGVLKLYHIS-APTC--IDADFPP 177 (607)
Q Consensus 109 l~~~n~~ir~lALr~l~~i~~--~e~~~~l-----~~~i~~~L~d~~~-~VRK~A~lal~kl~~~~-p~~~--~~~~~~~ 177 (607)
+.++++.++.-|.-++|+|.. +..-+++ ++++...+..+++ -..|.|..++-.+++.. |.-- .....++
T Consensus 161 l~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp 240 (514)
T KOG0166|consen 161 LSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILP 240 (514)
T ss_pred hcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 999999999999999999943 4443333 3556676766665 67788999999999854 4321 1134677
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChh
Q 007343 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN 257 (607)
Q Consensus 178 ~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~ 257 (607)
.|..+ +...|+.|+..|+-++..+....++. +...+....+.+|...|..+++-.+.-.|+.+....-.++.
T Consensus 241 ~L~~l-l~~~D~~Vl~Da~WAlsyLsdg~ne~-------iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~ 312 (514)
T KOG0166|consen 241 ALLRL-LHSTDEEVLTDACWALSYLTDGSNEK-------IQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE 312 (514)
T ss_pred HHHHH-HhcCCHHHHHHHHHHHHHHhcCChHH-------HHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH
Confidence 88887 48999999999999999987543321 11223334577888888888888888999999987666665
Q ss_pred HHHH-----HHHHHHHHhc-cCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHH
Q 007343 258 EIFD-----IMNLLEDRLQ-HANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (607)
Q Consensus 258 ~~~~-----il~~l~~~L~-~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~ 330 (607)
.... .++.+..++. +....+.-||+.++..++.....-.+.+++ -+.++|+.++++++-.+|--|.-+|.-+.
T Consensus 313 QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 313 QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 5544 3456777777 556779999999999988654432233443 46677888998888888887777776665
Q ss_pred hh
Q 007343 331 MR 332 (607)
Q Consensus 331 ~~ 332 (607)
+.
T Consensus 393 s~ 394 (514)
T KOG0166|consen 393 SS 394 (514)
T ss_pred cc
Confidence 44
No 34
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.14 E-value=0.0011 Score=71.37 Aligned_cols=315 Identities=17% Similarity=0.180 Sum_probs=190.0
Q ss_pred HhcCCCcc----hhhhhhhhhccCCCchhHHHHHHHHHhhccC-CChHHH---HHHHHHHHHcCCCCHHHHHHH---HHH
Q 007343 55 MTIGIDVS----AVFGEMVMCSATSDIVLKKMCYLYVGNYAKV-NPDLAL---LTINFLQRDCKDEDPMIRGLA---LRS 123 (607)
Q Consensus 55 ~~~G~d~s----~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~-~~el~~---L~iNtl~kDl~~~n~~ir~lA---Lr~ 123 (607)
+.+|.|-. ...+.|+.+++.+|...+--+.-.+-+.++- ..++.. .+-..+.|-.+|++..+|+.| -|-
T Consensus 72 iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRL 151 (675)
T KOG0212|consen 72 IALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRL 151 (675)
T ss_pred HHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHH
Confidence 34676643 3456677888888887665555444444432 122211 223455667788999999987 344
Q ss_pred hhcCChHhh----HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc---CCCCchHHHHHhhcCCCChhHHHHHH
Q 007343 124 LCSLRVANL----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCL 196 (607)
Q Consensus 124 l~~i~~~e~----~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~---~~~~~~~~L~~lLl~D~d~~V~~~a~ 196 (607)
+-.|..++- ++.++|-+..-+.+.+|++|..-+-=+ +....-|+.- .-+++.+-|-.+ ++|+++.|+.-+=
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl-~~Lds~P~~~m~~yl~~~ldGLf~~-LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWL-YVLDSVPDLEMISYLPSLLDGLFNM-LSDSSDEVRTLTD 229 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHhcCCcHHHHhcchHHHHHHHHH-hcCCcHHHHHHHH
Confidence 444443322 566777788888899999998655444 4433445531 114567777787 5999999986555
Q ss_pred HHHHHHHh---hccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH----HHHHHHHHHH
Q 007343 197 SALQEIWS---LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI----FDIMNLLEDR 269 (607)
Q Consensus 197 ~~L~ei~~---~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~----~~il~~l~~~ 269 (607)
.++.+..+ .+|. ... ....+.-+...+..+.|..|.+.|.-+..|.+-.++.. ..++..+.+.
T Consensus 230 t~l~~fL~eI~s~P~--------s~d--~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 230 TLLSEFLAEIRSSPS--------SMD--YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPC 299 (675)
T ss_pred HHHHHHHHHHhcCcc--------ccC--cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccC
Confidence 54444432 1221 000 01234455566778999999999998888776554433 2455555666
Q ss_pred hccCchHHHHHHH---H-HHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceee
Q 007343 270 LQHANGAVVLSTI---K-VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY 345 (607)
Q Consensus 270 L~~~n~aVv~~ai---~-~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~ 345 (607)
+....+.-..++. + .++.+..+......--++.+...|...++++..+.|..+|+.+..+-.+.|+-.-.|...+|
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if 379 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIF 379 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHH
Confidence 6554432111111 1 23333322111111123467777888888888999999999999999999985555554333
Q ss_pred -e----ccCCCHhHHHHHHHHHHHccCCCCHH---HHHHHHHHH
Q 007343 346 -C----QYNEPSYVKKLKLEMLTAVANESNTY---EIVTELCEY 381 (607)
Q Consensus 346 -~----~~~d~~~Ik~~kL~iL~~l~n~~N~~---~Iv~eL~~y 381 (607)
. ..|.+.-+-.+.|+++..+|+..|.. .-+..|++-
T Consensus 380 ~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 380 LTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEM 423 (675)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHH
Confidence 1 23334569999999999999887653 344444433
No 35
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.06 E-value=0.031 Score=63.82 Aligned_cols=214 Identities=15% Similarity=0.120 Sum_probs=123.6
Q ss_pred HHHHHHHHHhhcCCh------HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCC
Q 007343 115 MIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPD 188 (607)
Q Consensus 115 ~ir~lALr~l~~i~~------~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d 188 (607)
-+++-++..|+.+.. +++-.-+...++.-+..+..-|||+|+.|+..+....|.... .+.++.|.+-|-+-..
T Consensus 148 ai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-~~li~~Ll~~L~~~~q 226 (1233)
T KOG1824|consen 148 AIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-VELIEHLLKGLSNRTQ 226 (1233)
T ss_pred hhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhccCCCCc
Confidence 377777777766422 234444444455556777889999999999999877666542 2445555444322334
Q ss_pred hhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH----HHHHH
Q 007343 189 PQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI----FDIMN 264 (607)
Q Consensus 189 ~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~----~~il~ 264 (607)
+.-+..-+..|.+|+...+.-. ....+ .+ .+.+-.-++....-++-+.-+.|+.|..|....|.+. ..+++
T Consensus 227 ~~~~rt~Iq~l~~i~r~ag~r~-~~h~~---~i-vp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~ 301 (1233)
T KOG1824|consen 227 MSATRTYIQCLAAICRQAGHRF-GSHLD---KI-VPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIIN 301 (1233)
T ss_pred hHHHHHHHHHHHHHHHHhcchh-hcccc---hh-hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHH
Confidence 4445556777888876543200 00000 01 1233444444444445555555555544322222222 12333
Q ss_pred HHHHHhcc----------------------------------CchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHH
Q 007343 265 LLEDRLQH----------------------------------ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTL 310 (607)
Q Consensus 265 ~l~~~L~~----------------------------------~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~l 310 (607)
.+...+.. .+=-|..+|+||+..+-.+..+.-..+.+.+++.+++=
T Consensus 302 l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~R 381 (1233)
T KOG1824|consen 302 LCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISR 381 (1233)
T ss_pred HHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHH
Confidence 33332210 01148899999998876665554445667788888877
Q ss_pred hccCCchhHHHHHHHHHHHHhhCC
Q 007343 311 VSSGSPEQSYAVLSHLHILVMRAP 334 (607)
Q Consensus 311 l~s~~~ni~y~~L~~i~~l~~~~p 334 (607)
++.++.|++-.+......+...-|
T Consensus 382 fkEREEnVk~dvf~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 382 FKEREENVKADVFHAYIALLKQTR 405 (1233)
T ss_pred HHHHhhhHHHHHHHHHHHHHHcCC
Confidence 778899999999988877775544
No 36
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.01 E-value=0.013 Score=65.17 Aligned_cols=453 Identities=16% Similarity=0.130 Sum_probs=236.5
Q ss_pred HHHHHHHHHHHHHH--hcCCCcchhhhhhh---------hhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcC
Q 007343 42 DSKRELFKKVISYM--TIGIDVSAVFGEMV---------MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK 110 (607)
Q Consensus 42 ~~k~~~l~kli~~~--~~G~d~s~lf~~vi---------~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~ 110 (607)
+..|+.+-|++-.. +-|.+-.++.++++ .-++.+.-..|+++|...+...+.-.+ -.|+.+..|+.
T Consensus 650 eemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~---~~v~R~v~~lk 726 (1172)
T KOG0213|consen 650 EEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSD---PIVSRVVLDLK 726 (1172)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCch---HHHHHHhhhhc
Confidence 44555555666543 45776555544443 345677777899999999988776554 46889999999
Q ss_pred CCCHHHHHHHHHHh----hcCChHh----hHHHHHHHHhhhcCCCChHHH--HHHHHHHHHHH--hhCCCCcCCCCchHH
Q 007343 111 DEDPMIRGLALRSL----CSLRVAN----LVEYLVGPLGLGLKDNNSYVR--TVAVIGVLKLY--HISAPTCIDADFPPT 178 (607)
Q Consensus 111 ~~n~~ir~lALr~l----~~i~~~e----~~~~l~~~i~~~L~d~~~~VR--K~A~lal~kl~--~~~p~~~~~~~~~~~ 178 (607)
|.+|..|.++..++ ++++..+ +-+.++..|.-++.+.+..+. =...-++.+-+ +.-|-. +.++..
T Consensus 727 de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpyl---pqi~st 803 (1172)
T KOG0213|consen 727 DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYL---PQICST 803 (1172)
T ss_pred cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccch---HHHHHH
Confidence 99998777766554 4554433 455555666666655433222 12111222211 112322 345555
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC----
Q 007343 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL---- 254 (607)
Q Consensus 179 L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~---- 254 (607)
+... |+...+-|+..|.-++..+..-=.....+ .++.+ .=.-|...|.+-.|-.--.||..+......
T Consensus 804 iL~r-Lnnksa~vRqqaadlis~la~Vlktc~ee------~~m~~-lGvvLyEylgeeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 804 ILWR-LNNKSAKVRQQAADLISSLAKVLKTCGEE------KLMGH-LGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHH-hcCCChhHHHHHHHHHHHHHHHHHhccHH------HHHHH-hhHHHHHhcCcccHHHHHHHHHHHHHHHHhcccc
Confidence 5565 37888888877766666554321110000 00000 011123344444444444455444432100
Q ss_pred -ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchh-HHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh
Q 007343 255 -DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDV-HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 255 -~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~-~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~ 332 (607)
-..-..+++..+.++|++...-|+-.|+.++-.+....+.. .-.-.-||.==|+-+|.+-..++|-.+...+-.|+
T Consensus 876 km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Ia-- 953 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIA-- 953 (1172)
T ss_pred ccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--
Confidence 00114578999999999988889888888776655433321 10001112111223333334445555544444443
Q ss_pred CCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHH
Q 007343 333 APFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVD 412 (607)
Q Consensus 333 ~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~ 412 (607)
..--=++++.-|++-+..-+.+-+.-...+|+..|+..... ..+.
T Consensus 954 ----------------------------------kaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF-tVLP 998 (1172)
T KOG0213|consen 954 ----------------------------------KAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF-TVLP 998 (1172)
T ss_pred ----------------------------------HhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch-hhhH
Confidence 22223455555555555555555556666777777654321 1334
Q ss_pred HHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchH--HHHHH-----HHHHhcccCCCCC-hHH
Q 007343 413 RLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPK--AKAAL-----IWMLGEYSQDMQD-APY 484 (607)
Q Consensus 413 ~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~--~~~~~-----iwilGEy~~~i~~-~~~ 484 (607)
+|+.=-+...-.|.+-++-.+..++..-.+...+.+..+.-++.+.+.+-+ -+..+ --.+|=||.-.++ ..-
T Consensus 999 almneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iH 1078 (1172)
T KOG0213|consen 999 ALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIH 1078 (1172)
T ss_pred HHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHH
Confidence 444333333333444444444444443333222222223323223222211 12211 2236766665554 345
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhHHhHHHHHHHHccC
Q 007343 485 ILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQY 552 (607)
Q Consensus 485 ~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dvrdRA~~y~~Ll~~ 552 (607)
+|+.+.-+..+.+ |.|...+..++--+-..-. .+.+++++++ +.....--||+| ||+.+..
T Consensus 1079 LLN~iWpNIle~s-Phviqa~~e~~eg~r~~Lg--~~~~~~Y~~Q-GLFHParkVR~~---yw~vyn~ 1139 (1172)
T KOG0213|consen 1079 LLNLIWPNILETS-PHVIQAFDEAMEGLRVALG--PQAMLKYCLQ-GLFHPARKVRKR---YWTVYNS 1139 (1172)
T ss_pred HHHHhhhhhcCCC-hHHHHHHHHHHHHHHHHhc--hHHHHHHHHH-hccCcHHHHHHH---HHHHHHh
Confidence 6666667777766 9998888887766654332 2456666554 345667789999 8877764
No 37
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.86 E-value=0.088 Score=63.13 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=117.7
Q ss_pred CchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCh--Hhh--HHHHHHHHhhhcCCCChHH
Q 007343 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV--ANL--VEYLVGPLGLGLKDNNSYV 151 (607)
Q Consensus 76 ~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~--~e~--~~~l~~~i~~~L~d~~~~V 151 (607)
++..-++.|.|+..-..--.- ---..+.+..-+..+-+-+|+-||++++.|.. |.+ -+.+...|..-+.|++..|
T Consensus 793 d~~~a~li~~~la~~r~f~~s-fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQS-FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHh-hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHH
Confidence 344556777776544321111 12345666777788889999999999999843 332 3455666778889999999
Q ss_pred HHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHh
Q 007343 152 RTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN 231 (607)
Q Consensus 152 RK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~ 231 (607)
|-+|+--++|..--+|+.+ ..+.+.+.+.. .|+..+|+-.++..+.+|+...|++.. + ..+.-+++.
T Consensus 872 REAaldLvGrfvl~~~e~~--~qyY~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~~---------i-~~~cakmlr 938 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELI--FQYYDQIIERI-LDTGVSVRKRVIKILRDICEETPDFSK---------I-VDMCAKMLR 938 (1692)
T ss_pred HHHHHHHHhhhhhccHHHH--HHHHHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChhh---------H-HHHHHHHHH
Confidence 9999999999998899988 56888888885 788999999999999999998876421 1 235677777
Q ss_pred hcCCCChhHHHHHHHHHhcc
Q 007343 232 RIKEFSEWAQCLVLELVAKY 251 (607)
Q Consensus 232 ~l~~~~~w~qi~iL~lL~~~ 251 (607)
++.+-..-.|-.+...+.++
T Consensus 939 Rv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 939 RVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HhccchhHHHHHHHHHHHHH
Confidence 77665554666666666654
No 38
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.011 Score=66.00 Aligned_cols=337 Identities=14% Similarity=0.165 Sum_probs=205.4
Q ss_pred chhHHHHHHHHHhhccCCCh-HHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCC-------hHhhHHHHHHHHhhhcCCCC
Q 007343 77 IVLKKMCYLYVGNYAKVNPD-LALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VANLVEYLVGPLGLGLKDNN 148 (607)
Q Consensus 77 ~~~Krl~YL~l~~~~~~~~e-l~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~-------~~e~~~~l~~~i~~~L~d~~ 148 (607)
-..-+-+=..+..++....| +.-.+...+...+++||--.|-.|.-+.|++- ...+++...|.+.+.+.|++
T Consensus 340 Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 33456666666666665444 44577778888999999999999999999982 23567888899999999999
Q ss_pred hHHHHHHHHHHHHHHhhCCCCcCCCCchH----HHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchH
Q 007343 149 SYVRTVAVIGVLKLYHISAPTCIDADFPP----TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (607)
Q Consensus 149 ~~VRK~A~lal~kl~~~~p~~~~~~~~~~----~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~ 224 (607)
-.||.+|+-+++|++...|+.+....... .+..-| +| .|-|..|+.-++..+.+..++-..+. +. ....+ +
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~D-ePrva~N~CWAf~~Laea~~eA~~s~-~q-t~~~t-~ 494 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-ND-EPRVASNVCWAFISLAEAAYEAAVSN-GQ-TDPAT-P 494 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hh-CchHHHHHHHHHHHHHHHHHHhccCC-CC-CCccc-h
Confidence 99999999999999999998774333322 222332 44 68899998888887775432210000 00 00111 2
Q ss_pred HHHHHHhhcC------CCC-hhHHHHHHHHHhccCCCChhHHHH--------HHHHHHHHhc-----cCc-------hHH
Q 007343 225 VIYYLLNRIK------EFS-EWAQCLVLELVAKYVPLDSNEIFD--------IMNLLEDRLQ-----HAN-------GAV 277 (607)
Q Consensus 225 ~~~~Ll~~l~------~~~-~w~qi~iL~lL~~~~~~~~~~~~~--------il~~l~~~L~-----~~n-------~aV 277 (607)
.+..+++.|- +.+ .-+.+..-+.|.......+++... ++..+...++ ... -++
T Consensus 495 ~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~ 574 (859)
T KOG1241|consen 495 FYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSL 574 (859)
T ss_pred hHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHH
Confidence 3444444331 222 235555555555443333333221 2333333333 111 256
Q ss_pred HHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhcc-CCchhHHHHHHHHHHHHhhCCcccccccceeee------ccCC
Q 007343 278 VLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSS-GSPEQSYAVLSHLHILVMRAPFIFASDYKHFYC------QYNE 350 (607)
Q Consensus 278 v~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s-~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~------~~~d 350 (607)
+..+...++.-..+ +. .++.+.+.+.+.+.+++ ++.-+.--++-.+..++..-..-|.+|+..|.- ..-+
T Consensus 575 Lc~~Lq~i~rk~~~--~~-~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~ 651 (859)
T KOG1241|consen 575 LCNTLQSIIRKVGS--DI-REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ 651 (859)
T ss_pred HHHHHHHHHHHccc--cc-hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch
Confidence 66666666654332 22 23455667777888876 444455666666666666544456666655531 1223
Q ss_pred CHhHHHHHHHHHHHccCCCC------HHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHcccCC-hHHHHHHHHHhhhhc
Q 007343 351 PSYVKKLKLEMLTAVANESN------TYEIVTELCEYAANV--DIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEME 421 (607)
Q Consensus 351 ~~~Ik~~kL~iL~~l~n~~N------~~~Iv~eL~~y~~~~--d~~~~~~~i~~I~~la~k~~~-~~~~v~~ll~ll~~~ 421 (607)
+..|-.-+.-+.-.+|+.=+ .+.+...|.+.+.+. +.+.+..++...|.+|..... ...|++..+.++...
T Consensus 652 e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~a 731 (859)
T KOG1241|consen 652 EYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQA 731 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35577778888777776533 235556666666654 567888888899999987643 466777777777654
No 39
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=97.84 E-value=0.035 Score=59.74 Aligned_cols=98 Identities=21% Similarity=0.187 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhcccCCCCCh---HHHHHHHHHhh----------h--------cCCcHHHHHHHHHHHHHHhhcCCchh-
Q 007343 463 KAKAALIWMLGEYSQDMQDA---PYILESLTENW----------E--------EEPSAEVRLHLLTAVMKCFFKRPPET- 520 (607)
Q Consensus 463 ~~~~~~iwilGEy~~~i~~~---~~~l~~l~~~f----------~--------~e~~~~vk~~iLta~~Kl~~~~p~~~- 520 (607)
+.-..++|+||||+.-.-+. .++++.+.+.. . ..+ +.+-..++|+.+|+..+.++-.
T Consensus 325 ~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~~~~~~~~~~~~~-~rl~~~lmt~laKLAsr~~dl~p 403 (459)
T PF14764_consen 325 ELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQSRRDPSASRPSSQ-PRLMTVLMTALAKLASRSQDLIP 403 (459)
T ss_pred HHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhccccccccCCCCc-hhHHHHHHHHHHHHHHhCHhhhH
Confidence 34556899999998755442 44444433211 1 112 6677788999999999887321
Q ss_pred --HHHHHHHHHHh---------hcCCChhHHhHHHHHHHHccCCHHHHhhhcC
Q 007343 521 --QKVLGAALAAG---------LADFHQDVHDRALFYHRLLQYNVSVAERVVN 562 (607)
Q Consensus 521 --~~~~~~~l~~~---------~~d~~~dvrdRA~~y~~Ll~~~~~~~~~i~~ 562 (607)
.-.+.++-..+ ....+..|..||.+++.||+. |..|.-|+.
T Consensus 404 Rv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~-PsvA~~vL~ 455 (459)
T PF14764_consen 404 RVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKM-PSVAQFVLT 455 (459)
T ss_pred HHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcC-chHHHHhcC
Confidence 11222222211 122479999999999999997 467765554
No 40
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.83 E-value=0.052 Score=60.57 Aligned_cols=130 Identities=19% Similarity=0.150 Sum_probs=88.3
Q ss_pred hccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCC-Ch
Q 007343 71 CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN-NS 149 (607)
Q Consensus 71 l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~-~~ 149 (607)
++-.+|+.-+-.|--.+++++.. .-++ -.+.+++-|..+.+|+||--.-|+.+-+.+.-=++.+.|.++....+. +.
T Consensus 449 llided~yar~egreIisnLaka-aGla-~mistmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSw 526 (1172)
T KOG0213|consen 449 LLIDEDYYARVEGREIISNLAKA-AGLA-TMISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSW 526 (1172)
T ss_pred ceecchHHHhhchHHHHHHHHHH-hhhH-HHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccch
Confidence 33466777777776677776643 2233 457899999999999999888887776544444566777777766665 88
Q ss_pred HHHHHHHHHHHHHHhhCCCCcC--CCCchHHHHHhhcCCCChhHHH---HHHHHHHHHH
Q 007343 150 YVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVA---NCLSALQEIW 203 (607)
Q Consensus 150 ~VRK~A~lal~kl~~~~p~~~~--~~~~~~~L~~lLl~D~d~~V~~---~a~~~L~ei~ 203 (607)
--|.+.+-++.++.-+..-.+. -..+++.+...| .|...-|+. .|+++|.|..
T Consensus 527 qaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl-~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 527 QARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGL-KDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred hhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhh-cccchhhhhHHHHHHHHHHHhc
Confidence 8899999888888765433321 134677777874 787766654 4555555543
No 41
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.81 E-value=0.0012 Score=71.17 Aligned_cols=89 Identities=17% Similarity=0.068 Sum_probs=56.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHH
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~ 180 (607)
++..+.+-+.|+++.+|.-|.++|+.++.+...+. +...+.|++|.||..++-++.. .. .+-.+.+.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~----L~~~L~~~~p~vR~aal~al~~-r~--------~~~~~~L~ 153 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPW----LEPLLAASEPPGRAIGLAALGA-HR--------HDPGPALE 153 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHH----HHHHhcCCChHHHHHHHHHHHh-hc--------cChHHHHH
Confidence 46777777777777777777777777777765543 3355567777777766644333 11 12234566
Q ss_pred HhhcCCCChhHHHHHHHHHHHHH
Q 007343 181 HLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 181 ~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
.+| +|.|+.|..+|+.++..+.
T Consensus 154 ~~L-~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 154 AAL-THEDALVRAAALRALGELP 175 (410)
T ss_pred HHh-cCCCHHHHHHHHHHHHhhc
Confidence 653 6777777777777776664
No 42
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.80 E-value=0.0024 Score=67.22 Aligned_cols=187 Identities=20% Similarity=0.173 Sum_probs=127.3
Q ss_pred hhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhh
Q 007343 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (607)
Q Consensus 64 lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~ 143 (607)
....+++.+.+++...|.-+..++..+.. .-++..+.+-+.|.++.+|..|..++|.++.++-++.+...+..
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~- 116 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN- 116 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-
Confidence 35566788888888888888777665532 36888999999999999999999999999999988877766554
Q ss_pred cCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCCh------------hHHHHHHHHHHHHHhhccccch
Q 007343 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP------------QVVANCLSALQEIWSLEASTSE 211 (607)
Q Consensus 144 L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~------------~V~~~a~~~L~ei~~~~~~~~~ 211 (607)
|++.+||.+|+.++.++.. +..+..+...+ +|.+. .++.+++.++..+...
T Consensus 117 --d~~~~vR~~aa~aL~~~~~--------~~a~~~l~~~l-~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~------ 179 (335)
T COG1413 117 --DENEGVRAAAARALGKLGD--------ERALDPLLEAL-QDEDSGSAAAALDAALLDVRAAAAEALGELGDP------ 179 (335)
T ss_pred --CCcHhHHHHHHHHHHhcCc--------hhhhHHHHHHh-ccchhhhhhhhccchHHHHHHHHHHHHHHcCCh------
Confidence 8999999999999999863 22345566664 66553 3555565555554321
Q ss_pred hhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcC
Q 007343 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (607)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~ 290 (607)
..+..+...+.+...-.+......|......+ ..+...+...++..+.-|...++..+..++.
T Consensus 180 ------------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 180 ------------EAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred ------------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 11223333344444445555555555443322 2345666677777888888888877776554
No 43
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.77 E-value=0.0042 Score=65.39 Aligned_cols=93 Identities=27% Similarity=0.213 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHH
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L 179 (607)
.....+.+.+.|+++.+|..|...++.++.++.++ .+.+.+.|.++.||..|+.++.++. + +...+.+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av~----~l~~~l~d~~~~vr~~a~~aLg~~~--~------~~a~~~l 110 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSEEAVP----LLRELLSDEDPRVRDAAADALGELG--D------PEAVPPL 110 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHHH----HHHHHhcCCCHHHHHHHHHHHHccC--C------hhHHHHH
Confidence 56788999999999999999999999999887655 5668889999999999999988774 2 3455667
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHh
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWS 204 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~ 204 (607)
.+++.+|.|..|+.+|..+|..+..
T Consensus 111 i~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 111 VELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred HHHHHcCCcHhHHHHHHHHHHhcCc
Confidence 7775448999999999999998854
No 44
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0039 Score=67.33 Aligned_cols=293 Identities=15% Similarity=0.134 Sum_probs=192.2
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCC----hHhhHHHHHHHHhhhcCCCChHHHHHH
Q 007343 80 KKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR----VANLVEYLVGPLGLGLKDNNSYVRTVA 155 (607)
Q Consensus 80 Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~----~~e~~~~l~~~i~~~L~d~~~~VRK~A 155 (607)
+-++--|...+..+|++.......-+--=+.|.-+++.--|.|.+|.+. .++..+..+..++..|+.+..-.|=.|
T Consensus 244 ~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA 323 (898)
T COG5240 244 GVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSA 323 (898)
T ss_pred heehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4445556677778888887766776666778888999999999999853 356777778888888999998889999
Q ss_pred HHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHh----
Q 007343 156 VIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN---- 231 (607)
Q Consensus 156 ~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~---- 231 (607)
.-.+-++...+|+.+ .-.-+.+++++ +|.|..+-.-|+..|..-... ..+.+|.+
T Consensus 324 ~Riln~lam~~P~kv--~vcN~evEsLI-sd~Nr~IstyAITtLLKTGt~------------------e~idrLv~~I~s 382 (898)
T COG5240 324 MRILNQLAMKYPQKV--SVCNKEVESLI-SDENRTISTYAITTLLKTGTE------------------ETIDRLVNLIPS 382 (898)
T ss_pred HHHHHHHHhhCCcee--eecChhHHHHh-hcccccchHHHHHHHHHcCch------------------hhHHHHHHHHHH
Confidence 999999999999988 44567788885 999988776666665543211 12333333
Q ss_pred hcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccC-chHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHH
Q 007343 232 RIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTL 310 (607)
Q Consensus 232 ~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~-n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~l 310 (607)
.+.+.+.-..+.+++.++.++-.=|.....+++.+...|... .-----.++-++..+-.+.|+-+. ++-.-|..|
T Consensus 383 fvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE----raLe~LC~f 458 (898)
T COG5240 383 FVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE----RALEVLCTF 458 (898)
T ss_pred HHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH----HHHHHHHHH
Confidence 345666666666677776665555556667888887766543 222222333344443333344333 334456788
Q ss_pred hccCCchhHHHHHHHHHHHHhhCCccccc--ccceeeec--cCCCHhHHHHHHHHHHHcc----CCCCHHHHHHHHHHHh
Q 007343 311 VSSGSPEQSYAVLSHLHILVMRAPFIFAS--DYKHFYCQ--YNEPSYVKKLKLEMLTAVA----NESNTYEIVTELCEYA 382 (607)
Q Consensus 311 l~s~~~ni~y~~L~~i~~l~~~~p~~~~~--~~~~f~~~--~~d~~~Ik~~kL~iL~~l~----n~~N~~~Iv~eL~~y~ 382 (607)
+. |-+-.-++++.+..+-...|..-.| ++++.|-+ ... ..||.-++.-|.+.+ +.---+.+..-|...+
T Consensus 459 IE--Dcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN-~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRcl 535 (898)
T COG5240 459 IE--DCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILEN-NIVRSAAVQALSKFALNISDVVSPQSVENALKRCL 535 (898)
T ss_pred Hh--hcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhh-hHHHHHHHHHHHHhccCccccccHHHHHHHHHHHh
Confidence 86 4556677888877777766654332 33333322 122 349999999997654 2223344556677899
Q ss_pred hcCCHHHHHHHHHHHHHH
Q 007343 383 ANVDIPIARESIRAVGKI 400 (607)
Q Consensus 383 ~~~d~~~~~~~i~~I~~l 400 (607)
.+.|.+++..+.-++..+
T Consensus 536 nD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 536 NDQDDEVRDRASFLLRNM 553 (898)
T ss_pred hcccHHHHHHHHHHHHhh
Confidence 999999998776665544
No 45
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.014 Score=65.51 Aligned_cols=248 Identities=15% Similarity=0.156 Sum_probs=121.5
Q ss_pred hhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHH---HhhcCCh------HhhHH
Q 007343 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALR---SLCSLRV------ANLVE 134 (607)
Q Consensus 64 lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr---~l~~i~~------~e~~~ 134 (607)
+.|+|-++++.++..++|=+-|++..+....||+.-..++.+.+-|.+.++-|-.-++. -||.+.. .++.+
T Consensus 143 lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~ 222 (866)
T KOG1062|consen 143 LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVP 222 (866)
T ss_pred hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777777777766644433332 2333311 22344
Q ss_pred HHHHHHhhhcCC-----------CChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhh-cCCCChh----HHHHHHHH
Q 007343 135 YLVGPLGLGLKD-----------NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM-LNDPDPQ----VVANCLSA 198 (607)
Q Consensus 135 ~l~~~i~~~L~d-----------~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lL-l~D~d~~----V~~~a~~~ 198 (607)
.++..+++.... ++|+..-..+.-+.=+.+.+++.- +-+-+.|-+.. ..|++.. ++..++..
T Consensus 223 ~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daS--d~M~DiLaqvatntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 223 SLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADAS--DLMNDILAQVATNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred HHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHH--HHHHHHHHHHHhcccccccchhHHHHHHHHH
Confidence 444444443221 356666665544444444444432 11222222221 1122221 12222222
Q ss_pred HHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHH
Q 007343 199 LQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVV 278 (607)
Q Consensus 199 L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv 278 (607)
++.|....+ ...+ .+.-|-+-|...+.-..-..|+.|.+..+.++..++.--..+...|+...+++.
T Consensus 301 I~~I~~~~~---------Lrvl----ainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIk 367 (866)
T KOG1062|consen 301 IMDIRSNSG---------LRVL----AINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIK 367 (866)
T ss_pred HHhccCCch---------HHHH----HHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHH
Confidence 222221110 0000 111111222233444444455555555566666666555566667777777777
Q ss_pred HHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh
Q 007343 279 LSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 279 ~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~ 332 (607)
..|..+...+.+. ..+. . +..=|+.||.+.+++.+--.-..|..++.+
T Consensus 368 rralELs~~lvn~-~Nv~-~----mv~eLl~fL~~~d~~~k~~~as~I~~laEk 415 (866)
T KOG1062|consen 368 RRALELSYALVNE-SNVR-V----MVKELLEFLESSDEDFKADIASKIAELAEK 415 (866)
T ss_pred HHHHHHHHHHhcc-ccHH-H----HHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 7777777766643 1221 1 222234455555666665555555555544
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.082 Score=59.33 Aligned_cols=522 Identities=15% Similarity=0.170 Sum_probs=277.6
Q ss_pred ChHHHHHHHHHHHHHHhcCCC-----cch-hhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCC
Q 007343 40 IDDSKRELFKKVISYMTIGID-----VSA-VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDED 113 (607)
Q Consensus 40 ~~~~k~~~l~kli~~~~~G~d-----~s~-lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n 113 (607)
+.+-+..++.-+.-+|++-|+ |-+ +|..-+..|-|++-+++-.|--||++..++.-|+++-.--...+++- |
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~-p- 307 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP-P- 307 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-c-
Confidence 345567777777778877775 223 56666788889999999999999999988888887766666666665 2
Q ss_pred HHHHHHHHHHhhcCChHhhHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCC
Q 007343 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLK-------DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND 186 (607)
Q Consensus 114 ~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~-------d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D 186 (607)
.--.-|..++ +.+.|.+.++|. |.+..+-|+|-.|+.=+-+...|.+- +...+.+++-+ ..
T Consensus 308 -~~~~fa~~a~---------~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i-~~ 375 (859)
T KOG1241|consen 308 -SSKYFARQAL---------QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENI-QN 375 (859)
T ss_pred -hhhHHHHHHH---------hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHhc-CC
Confidence 2222233222 234444444332 23457778888777666665555542 46677777664 66
Q ss_pred CChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC-------CCChhHHHHHHHHHhccCCCChhHH
Q 007343 187 PDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK-------EFSEWAQCLVLELVAKYVPLDSNEI 259 (607)
Q Consensus 187 ~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~-------~~~~w~qi~iL~lL~~~~~~~~~~~ 259 (607)
+|=-=+-+|+.++..+... |+ ++...-+..+.+..+++... +..+|.--+|.+.+..-. .+....
T Consensus 376 pdwr~reaavmAFGSIl~g-p~------~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~-~n~~~l 447 (859)
T KOG1241|consen 376 PDWRNREAAVMAFGSILEG-PE------PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAI-INQELL 447 (859)
T ss_pred cchhhhhHHHHHHHhhhcC-Cc------hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhc-ccHhhh
Confidence 6766677788888887642 22 11111111223444444433 567788888888776322 122222
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHhhc-------CCc--chhHHHHHHHHHHHHHHHhc---cCCchhHHHHHHHHH
Q 007343 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLT-------LSM--TDVHQQVYERIKAPLLTLVS---SGSPEQSYAVLSHLH 327 (607)
Q Consensus 260 ~~il~~l~~~L~~~n~aVv~~ai~~i~~l~-------~~~--~~~~~~~~~~l~~~L~~ll~---s~~~ni~y~~L~~i~ 327 (607)
...+..+..-|+ ..|-|.-.+...++.+. ++. .+.....++-+.+.|+.-.. .++.|+|-.+.+++.
T Consensus 448 ~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALm 526 (859)
T KOG1241|consen 448 QSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALM 526 (859)
T ss_pred hHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 234444444442 34555555555555443 111 11111233444444443332 267899999999999
Q ss_pred HHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHH-HHHHHhhcCC-HHHHHHHHHHHHHHHccc-
Q 007343 328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVT-ELCEYAANVD-IPIARESIRAVGKIALQQ- 404 (607)
Q Consensus 328 ~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~-eL~~y~~~~d-~~~~~~~i~~I~~la~k~- 404 (607)
.++...|+-..+- +....+-++.+| ++.++ +.+.+..... .++..-+...++.+-.|.
T Consensus 527 ElIk~st~~vy~~-------------v~~~~l~il~kl------~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~ 587 (859)
T KOG1241|consen 527 ELIKNSTDDVYPM-------------VQKLTLVILEKL------DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG 587 (859)
T ss_pred HHHHcCcHHHHHH-------------HHHHHHHHHHHH------HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9998887643332 333333333332 11111 1111110000 122233333444444444
Q ss_pred ---CCh-HHHHHHHHHhhhhcCc-hhhHHHHHHHHHHHHhCCCCch-hHHHHHHhhh--hccCCchHHHHHHHHHHhccc
Q 007343 405 ---YDV-NAIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSH-DCIAVVGSIS--SQNVQEPKAKAALIWMLGEYS 476 (607)
Q Consensus 405 ---~~~-~~~v~~ll~ll~~~~~-~v~~e~i~~i~~i~~~~p~~~~-~~~~~l~~l~--~~~~~~~~~~~~~iwilGEy~ 476 (607)
+.. .-....+++++..+.+ .+..|+.-.+-.++..-...+. +.-.+..-+. ....++..+.++++=++|.-+
T Consensus 588 ~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ 667 (859)
T KOG1241|consen 588 SDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLA 667 (859)
T ss_pred ccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 332 3356666777777444 4555555555544433222121 1111111111 135567778888888888877
Q ss_pred CCCCC-----hHHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHhhcCCchhHH---HHHHHHHHhhc---CC----C---
Q 007343 477 QDMQD-----APYILESLTENWEEE--PSAEVRLHLLTAVMKCFFKRPPETQK---VLGAALAAGLA---DF----H--- 536 (607)
Q Consensus 477 ~~i~~-----~~~~l~~l~~~f~~e--~~~~vk~~iLta~~Kl~~~~p~~~~~---~~~~~l~~~~~---d~----~--- 536 (607)
.-.++ +.++...+++....+ + .+||=+||+.+.-+...-....++ ++..+|+.+.+ |. .
T Consensus 668 raL~~~i~py~d~~mt~Lvq~Lss~~~h-R~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dY 746 (859)
T KOG1241|consen 668 RALEDDILPYCDELMTVLVQCLSSPNLH-RNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDY 746 (859)
T ss_pred HHHHhhhhhHHHHHHHHHHHHccCcccc-ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHH
Confidence 65543 567788888877654 3 679999999998888755434444 34445555541 11 1
Q ss_pred -hhHHhHHHH-HHHHccCCHHHHh-hhcCCCCCCccccc------ccCChHHHHHHHhhccchhhhhcccchhhccC
Q 007343 537 -QDVHDRALF-YHRLLQYNVSVAE-RVVNPPKQAVSVFA------DTQSSEIKDRIFDEFNSLSVVYQKVTTMSKIG 604 (607)
Q Consensus 537 -~dvrdRA~~-y~~Ll~~~~~~~~-~i~~~~~p~~~~~~------~~~~~~~~~~l~~~~~tls~iy~~~~~~~~~~ 604 (607)
-++|.-+.+ |..++.---..++ ..+.+--|.+-.|. ++.+..+...-.--||-|..-|++-.-.|..+
T Consensus 747 vd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~~ 823 (859)
T KOG1241|consen 747 VDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFLD 823 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhcc
Confidence 245555555 4444331000000 01111122221111 22234444555556788888888776666543
No 47
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.67 E-value=0.047 Score=62.44 Aligned_cols=304 Identities=17% Similarity=0.143 Sum_probs=177.5
Q ss_pred CChHHHHHHHHHHHHcCC--CCHHHHHHHHHHhhcCChH---hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC
Q 007343 94 NPDLALLTINFLQRDCKD--EDPMIRGLALRSLCSLRVA---NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (607)
Q Consensus 94 ~~el~~L~iNtl~kDl~~--~n~~ir~lALr~l~~i~~~---e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~ 168 (607)
.|+..--.+-.+.+|+.+ .|.-+|-+|+-++|.++.. .-.+.+..-+.+++++++..|+++|+.|++.+--- +
T Consensus 811 ~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vg--n 888 (1233)
T KOG1824|consen 811 CPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVG--N 888 (1233)
T ss_pred ccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcC--c
Confidence 344445556677888875 4688999999999998642 22344555677899999999999999999988531 1
Q ss_pred CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc-cccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHH
Q 007343 169 TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE-ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLEL 247 (607)
Q Consensus 169 ~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~-~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~l 247 (607)
. +.|++.+.... +.+|-=..=.+..|-|+.... .+.-.+...++|.+ |.+......+...-.+-+.
T Consensus 889 l---~~yLpfil~qi--~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~l--------L~k~cE~~eegtR~vvAEC 955 (1233)
T KOG1824|consen 889 L---PKYLPFILEQI--ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWAL--------LFKHCECAEEGTRNVVAEC 955 (1233)
T ss_pred h---HhHHHHHHHHH--hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHH--------HHHhcccchhhhHHHHHHH
Confidence 1 45777776654 455544444556666665432 11001112222221 1122222344556666677
Q ss_pred HhccCCCChhHHHHHHHHHHHHhccCch---HHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHH
Q 007343 248 VAKYVPLDSNEIFDIMNLLEDRLQHANG---AVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVL 323 (607)
Q Consensus 248 L~~~~~~~~~~~~~il~~l~~~L~~~n~---aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L 323 (607)
|++.+-.+|+ .++..+...+++..+ +.+..|+|.-+...+..-+ ..++ .+.. ...++.++|.++|-++|
T Consensus 956 LGkL~l~epe---sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id---~~lk~~ig~-fl~~~~dpDl~VrrvaL 1028 (1233)
T KOG1824|consen 956 LGKLVLIEPE---SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPID---PLLKQQIGD-FLKLLRDPDLEVRRVAL 1028 (1233)
T ss_pred hhhHHhCChH---HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccC---HHHHHHHHH-HHHHHhCCchhHHHHHH
Confidence 7777665554 577888888877654 3455556554443332112 1122 2333 34567789999999999
Q ss_pred HHHHHHHhhCCccccc-----------------------ccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007343 324 SHLHILVMRAPFIFAS-----------------------DYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCE 380 (607)
Q Consensus 324 ~~i~~l~~~~p~~~~~-----------------------~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~ 380 (607)
..+...+.+.|.++.. ++.-|----||-.-+|..+.|-+|.|.+.-==..=+.+++.
T Consensus 1029 vv~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~ 1108 (1233)
T KOG1824|consen 1029 VVLNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLN 1108 (1233)
T ss_pred HHHHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHH
Confidence 9999998887753221 11123333467777999999999998654211111122233
Q ss_pred Hhhc--CCH-HHHHHHHHHHHHHHcccCCh-HHHHHHHHHhhh
Q 007343 381 YAAN--VDI-PIARESIRAVGKIALQQYDV-NAIVDRLLQFLE 419 (607)
Q Consensus 381 y~~~--~d~-~~~~~~i~~I~~la~k~~~~-~~~v~~ll~ll~ 419 (607)
++.+ .|. +++--.-..+.++|..-|+. -.-+|.+++=|+
T Consensus 1109 ~~~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr 1151 (1233)
T KOG1824|consen 1109 HVEDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLR 1151 (1233)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 3332 233 33333344556777776763 344555555443
No 48
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.025 Score=63.46 Aligned_cols=389 Identities=10% Similarity=0.070 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhh-hhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q 007343 42 DSKRELFKKVISYMTIGIDVSAVFGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d~s~lf~~vi-~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lA 120 (607)
..|..++++++++.-.|.= +.+...+ +.+.+++....-..-+--.+++..+.+...-=.|-+|-..++.|-+++..|
T Consensus 115 ~yr~~AiR~L~~I~d~~m~--~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~~~m~QyHa 192 (865)
T KOG1078|consen 115 LYRAAAIRALCSIIDGTML--QAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSDNIMVQYHA 192 (865)
T ss_pred chhHHHHHHHHhhcCcchh--HHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcHHHHHHHHH
Confidence 4577777777766533321 1122222 234444444444444444445555556555566666666666666666666
Q ss_pred HHHhhcCChHhhHHHHHHHHhhhcC--CCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHH
Q 007343 121 LRSLCSLRVANLVEYLVGPLGLGLK--DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSA 198 (607)
Q Consensus 121 Lr~l~~i~~~e~~~~l~~~i~~~L~--d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~ 198 (607)
+-.+-.|+..+=. .+...+.+... -.+|+-+---+-...++...++... .-+.+.+.+++ ...+.+|..-|..+
T Consensus 193 lglLyqirk~drl-a~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~--s~~~~fl~s~l-~~K~emV~~EaAra 268 (865)
T KOG1078|consen 193 LGLLYQIRKNDRL-AVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQAD--SPLFPFLESCL-RHKSEMVIYEAARA 268 (865)
T ss_pred HHHHHHHHhhhHH-HHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccch--hhHHHHHHHHH-hchhHHHHHHHHHH
Confidence 6666655331100 01111111111 1122222111111112222222221 23445555553 55555665555555
Q ss_pred HHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHH
Q 007343 199 LQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVV 278 (607)
Q Consensus 199 L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv 278 (607)
+..+....+. +..| .+..|--.+..+.+-++-..++.|.+..-..|.....----+.++....|-++.
T Consensus 269 i~~l~~~~~r---~l~p---------avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIa 336 (865)
T KOG1078|consen 269 IVSLPNTNSR---ELAP---------AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIA 336 (865)
T ss_pred HhhccccCHh---hcch---------HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchh
Confidence 5544332211 1111 111111111122222222222222222111111000000113344555666666
Q ss_pred HHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccc---ccccceeeeccCCCHhHH
Q 007343 279 LSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF---ASDYKHFYCQYNEPSYVK 355 (607)
Q Consensus 279 ~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~---~~~~~~f~~~~~d~~~Ik 355 (607)
.=|+-+++.-+... -++|+..++.+|+++=+-|.+-++.+++..++.++|..- .+.+....+ .+---.-|
T Consensus 337 t~AITtLLKTG~e~------sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr-~eGg~e~K 409 (865)
T KOG1078|consen 337 TLAITTLLKTGTES------SVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLR-EEGGFEFK 409 (865)
T ss_pred HHHHHHHHHhcchh------HHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHH-hccCchHH
Confidence 65666666544321 134556666667766566778888888888887776421 111111111 11112234
Q ss_pred HHHHHHHHHcc--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh---HHHHHHHHHhhhhcCchhhHHHH
Q 007343 356 KLKLEMLTAVA--NESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEAL 430 (607)
Q Consensus 356 ~~kL~iL~~l~--n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~---~~~v~~ll~ll~~~~~~v~~e~i 430 (607)
+--.|.+..+. |.+.-+..+..|.+|+.|. ++...+++-++.++.--|.. ..|+..+...+-..+..+..+.+
T Consensus 410 ~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv 487 (865)
T KOG1078|consen 410 RAIVDAIIDIIEENPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAV 487 (865)
T ss_pred HHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHH
Confidence 44555555544 4455566777777777643 45566666667776665542 45777777766666677777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHhhhhc
Q 007343 431 VLVKDLLRKYPQWSHDCIAVVGSISSQ 457 (607)
Q Consensus 431 ~~i~~i~~~~p~~~~~~~~~l~~l~~~ 457 (607)
..+..+..+.+..+..+..++.+++.+
T Consensus 488 ~alaKfg~~~~~l~~sI~vllkRc~~D 514 (865)
T KOG1078|consen 488 SALAKFGAQDVVLLPSILVLLKRCLND 514 (865)
T ss_pred HHHHHHhcCCCCccccHHHHHHHHhcC
Confidence 777777766777776666666666533
No 49
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.59 E-value=0.0051 Score=61.98 Aligned_cols=226 Identities=18% Similarity=0.245 Sum_probs=137.7
Q ss_pred HhhhcC-CCChHHHHHHHHHHHHH--HhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhh
Q 007343 140 LGLGLK-DNNSYVRTVAVIGVLKL--YHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (607)
Q Consensus 140 i~~~L~-d~~~~VRK~A~lal~kl--~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~ 216 (607)
+...|. ..+|+++.+|..++... |..+.+.+.+-+.++.+.++ ++++++.|...|+.++..+....+. .
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~l-L~~p~~~vr~~AL~aL~Nls~~~en-----~-- 88 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSL-LNDPNPSVREKALNALNNLSVNDEN-----Q-- 88 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHH-cCCCChHHHHHHHHHHHhcCCChhh-----H--
Confidence 334444 46899999998888885 33444555566889999998 5999999999999998877543221 1
Q ss_pred HhhhcchHHHHHHHhhcC--CCChhHHHHHHHHHhccCCCCh--hHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCc
Q 007343 217 REALISKPVIYYLLNRIK--EFSEWAQCLVLELVAKYVPLDS--NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM 292 (607)
Q Consensus 217 ~~~li~~~~~~~Ll~~l~--~~~~w~qi~iL~lL~~~~~~~~--~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~ 292 (607)
..+ +..+.++++.+. ..+.-.|..-|++|....-.+. ......+..+..+|.+.+..+...+.++++.+..+
T Consensus 89 --~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n- 164 (254)
T PF04826_consen 89 --EQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN- 164 (254)
T ss_pred --HHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccC-
Confidence 111 224566666432 2466799999999998864432 22334556667788888999999999999999865
Q ss_pred chhHHHHHH-HHHHHHHHHhccC-CchhHHHHHHHHHHHHhhCCcccccccceeee--ccCCCHhHHHHHHHHHHHccCC
Q 007343 293 TDVHQQVYE-RIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPFIFASDYKHFYC--QYNEPSYVKKLKLEMLTAVANE 368 (607)
Q Consensus 293 ~~~~~~~~~-~l~~~L~~ll~s~-~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~--~~~d~~~Ik~~kL~iL~~l~n~ 368 (607)
++....++. +.-..+..|++++ +.++-..+|..+.-|.... .+.- .++. .++... |+.+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~----~~~~-~~~~~~~~~~~~---------L~~~~~e 230 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI----KKEA-YVFVQDDFSEDS---------LFSLFGE 230 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh----Cccc-ceeccccCCchh---------HHHHHcc
Confidence 332222332 3334456677654 4555555555555443221 1110 0111 112211 2222222
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHH
Q 007343 369 SNTYEIVTELCEYAANVDIPIARES 393 (607)
Q Consensus 369 ~N~~~Iv~eL~~y~~~~d~~~~~~~ 393 (607)
.+...++|..-+...|++++.++
T Consensus 231 --~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 231 --SSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred --HHHHHHHHHHHHcCCCHHHhhhc
Confidence 35666777777777888887765
No 50
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.03 Score=62.97 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhcCCCcchhhhh------hhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHH
Q 007343 46 ELFKKVISYMTIGIDVSAVFGE------MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGL 119 (607)
Q Consensus 46 ~~l~kli~~~~~G~d~s~lf~~------vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~l 119 (607)
--+||+.|+++..|-.++-+.. +++=...++..++-++--..+..- -+.+.--.++-+++-++|.+|++|.-
T Consensus 63 lelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~--v~~i~ey~~~Pl~~~l~d~~~yvRkt 140 (734)
T KOG1061|consen 63 LELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR--VDKITEYLCDPLLKCLKDDDPYVRKT 140 (734)
T ss_pred chHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe--ehHHHHHHHHHHHHhccCCChhHHHH
Confidence 3577888877765543332221 134446667766665444333332 34555577899999999999999999
Q ss_pred HHHHhhcCCh--Hhh--HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC
Q 007343 120 ALRSLCSLRV--ANL--VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (607)
Q Consensus 120 ALr~l~~i~~--~e~--~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~ 168 (607)
|--+..++.. +++ ...+.+.++.++.|++|.|=-.|+-++.-+...+|+
T Consensus 141 aa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 141 AAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 9888888743 232 445677788889999999999999999999999885
No 51
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.52 E-value=0.016 Score=62.60 Aligned_cols=249 Identities=16% Similarity=0.079 Sum_probs=154.9
Q ss_pred HHHhhcCChHhhHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHH
Q 007343 121 LRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSAL 199 (607)
Q Consensus 121 Lr~l~~i~~~e~~~~l~~~i~~~L-~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L 199 (607)
|..|.-.+ +...+ .+...+ .|+++-|+..|+.++.... .+..++.|...| .|.+++|..++..+|
T Consensus 45 LdgL~~~G-~~a~~----~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L-~d~~~~vr~aaa~AL 110 (410)
T TIGR02270 45 VDGLVLAG-KAATE----LLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVL-QAGPEGLCAGIQAAL 110 (410)
T ss_pred HHHHHHhh-HhHHH----HHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHh-cCCCHHHHHHHHHHH
Confidence 55555444 44334 444555 4788899888887775331 123367888885 888999999999999
Q ss_pred HHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHH
Q 007343 200 QEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVL 279 (607)
Q Consensus 200 ~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~ 279 (607)
.++.. ......|+..+.+.+|+.+..++..+..-... -.+.+.+.|++.++.|.-
T Consensus 111 g~i~~------------------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~L~~~L~d~d~~Vra 165 (410)
T TIGR02270 111 GWLGG------------------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPALEAALTHEDALVRA 165 (410)
T ss_pred hcCCc------------------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHHHHHHhcCCCHHHHH
Confidence 87642 12345566667788999998888888764322 235677788899999999
Q ss_pred HHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHH
Q 007343 280 STIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKL 359 (607)
Q Consensus 280 ~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL 359 (607)
+|++++-.+.... ..+.|...+.+.++++|..++..+..+-. |.... .+..|+-..+ .+.+....
T Consensus 166 ~A~raLG~l~~~~----------a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~-~l~~~~~~~g--~~~~~~l~ 230 (410)
T TIGR02270 166 AALRALGELPRRL----------SESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWG-VCRRFQVLEG--GPHRQRLL 230 (410)
T ss_pred HHHHHHHhhcccc----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHH-HHHHHHhccC--ccHHHHHH
Confidence 9999998876431 12334556778999999999998865532 22211 1111221122 22333333
Q ss_pred HHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHHHHH
Q 007343 360 EMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDL 436 (607)
Q Consensus 360 ~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i 436 (607)
. +..+.... .++.-|...+++.+ .++.++.++|.+..- ..+..+++.++. +++..-+-..+..|
T Consensus 231 ~-~lal~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p-----~av~~L~~~l~d--~~~aR~A~eA~~~I 294 (410)
T TIGR02270 231 V-LLAVAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGDV-----EAAPWCLEAMRE--PPWARLAGEAFSLI 294 (410)
T ss_pred H-HHHhCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCCc-----chHHHHHHHhcC--cHHHHHHHHHHHHh
Confidence 3 34443222 66666666666533 788899999987642 256666666654 23444444444444
No 52
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0084 Score=61.61 Aligned_cols=317 Identities=19% Similarity=0.209 Sum_probs=199.1
Q ss_pred hhhhccCCCchhHHHHHHHHHhhccCCChH----HHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhh-------HHHH
Q 007343 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDL----ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANL-------VEYL 136 (607)
Q Consensus 68 vi~l~~s~~~~~Krl~YL~l~~~~~~~~el----~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~-------~~~l 136 (607)
|.-+.++.+..+..-+--++.+++-....- .++-...+...+..++-.+||.|..++.++.+-+- ...+
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 345678888888888888888877543321 11223346667777888999999999988755321 1223
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHh---hCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhh
Q 007343 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYH---ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (607)
Q Consensus 137 ~~~i~~~L~d~~~~VRK~A~lal~kl~~---~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~ 213 (607)
.++.++-+.++.-||+.|.-++..+-. .-...+ ..+-++.|.++ +...|+.|..-|..++..|.-...
T Consensus 170 -~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV-~aG~lpvLVsl-l~s~d~dvqyycttaisnIaVd~~------ 240 (550)
T KOG4224|consen 170 -EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLV-HAGGLPVLVSL-LKSGDLDVQYYCTTAISNIAVDRR------ 240 (550)
T ss_pred -hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhh-ccCCchhhhhh-hccCChhHHHHHHHHhhhhhhhHH------
Confidence 345567788899999988777776643 333444 46788999998 489999999999999998864321
Q ss_pred hhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHH-----HHHHHHHhccCchHHHHHHHHHHHhh
Q 007343 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHL 288 (607)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~i-----l~~l~~~L~~~n~aVv~~ai~~i~~l 288 (607)
.+.+..--.+..+..|+....+.++-.|+..=-.|+....++.- ...+ ++.+..+||+..--.+++.+-||-.+
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAGSLPLLVELLQSPMGPLILASVACIRNI 319 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc
Confidence 11111111233577777777788888888777777766544321 1122 34556677877666677777788433
Q ss_pred c--CCcchh-HHHHHHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHH
Q 007343 289 T--LSMTDV-HQQVYERIKAPLLTLVSSGSPE-QSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTA 364 (607)
Q Consensus 289 ~--~~~~~~-~~~~~~~l~~~L~~ll~s~~~n-i~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~ 364 (607)
. +-.+.+ ..+ -.-.||+++|.-++.| +|..+...+.-++..+- +..+.| +
T Consensus 320 sihplNe~lI~da---gfl~pLVrlL~~~dnEeiqchAvstLrnLAasse----~n~~~i----------~--------- 373 (550)
T KOG4224|consen 320 SIHPLNEVLIADA---GFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSE----HNVSVI----------R--------- 373 (550)
T ss_pred ccccCcccceecc---cchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhh----hhhHHH----------h---------
Confidence 3 322221 111 1234788888877776 88888887777765431 111111 1
Q ss_pred ccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChH-----HHHHHHHHhhhhcCchhh
Q 007343 365 VANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLEMEKDYVT 426 (607)
Q Consensus 365 l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~-----~~v~~ll~ll~~~~~~v~ 426 (607)
+++. +..|.+.+.+...+|+.++.-+|+.+|..-.+.. .++++++.+....++.+.
T Consensus 374 ---esgA---i~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~ 434 (550)
T KOG4224|consen 374 ---ESGA---IPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVR 434 (550)
T ss_pred ---hcCc---hHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhc
Confidence 3333 3445667888899999999999999986543321 245555555554443333
No 53
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=0.00063 Score=78.76 Aligned_cols=143 Identities=20% Similarity=0.176 Sum_probs=115.1
Q ss_pred cchhhhhhhhhc----cCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcC--ChHhhH
Q 007343 61 VSAVFGEMVMCS----ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL--RVANLV 133 (607)
Q Consensus 61 ~s~lf~~vi~l~----~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~-~~n~~ir~lALr~l~~i--~~~e~~ 133 (607)
++.+.|-|++.+ -.+|.++..-++|++..+---..+..--.-..|..-+. +|+|.+|+.+.-++|.+ +-|.++
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnli 996 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLI 996 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccccc
Confidence 455566667766 45678899999999988866555555444555555565 99999999999999997 668999
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc
Q 007343 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 134 ~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~ 206 (607)
+...+.+-+.|.|.++.|||+|++.+.++...+ .+...|.+...-.+| .|+++.+..-|=..+.|+..+.
T Consensus 997 e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl-~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 997 EPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCL-EDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHh-cCCcHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999987543 444468888888884 9999999988888999998653
No 54
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.44 E-value=0.00065 Score=67.40 Aligned_cols=183 Identities=18% Similarity=0.165 Sum_probs=106.1
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC--CCcchhhhhhh--------hhccCCCchhHHHHHHHHHhh
Q 007343 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG--IDVSAVFGEMV--------MCSATSDIVLKKMCYLYVGNY 90 (607)
Q Consensus 21 e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G--~d~s~lf~~vi--------~l~~s~~~~~Krl~YL~l~~~ 90 (607)
|++++...|.+-.. ..+=++|.+++.++-.+...| .+-..-|...+ +.+.+..-.+=+-+-..+..+
T Consensus 4 ~~~~~~~~l~~~~~---~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l 80 (228)
T PF12348_consen 4 EFEEILAALEKKES---ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDL 80 (228)
T ss_dssp --GGS-TTHHHHHT----SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCC---ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45566666632111 133467899999999988877 22222232222 344444444334444444443
Q ss_pred ccC-C---ChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChH-hhHHHH-HHHHhhhcCCCChHHHHHHHHHHHHHHh
Q 007343 91 AKV-N---PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVA-NLVEYL-VGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (607)
Q Consensus 91 ~~~-~---~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~-e~~~~l-~~~i~~~L~d~~~~VRK~A~lal~kl~~ 164 (607)
+.. . ...+-..++.+.+-+.+++..+|..|-.++..+... .+.+.+ .+.+..+..|++|-||..++.++..+..
T Consensus 81 ~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 81 ARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 321 1 123457789999999999999999998877766321 112333 6777789999999999999999999998
Q ss_pred hCC---CCcCC----CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 165 ISA---PTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 165 ~~p---~~~~~----~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
..| ..+.. +.+.+.+.++ +.|+|+.|+.+|-.++..+.+.-|
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~-l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKL-LSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHH-HTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HccchHhhhcccchHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHCC
Confidence 888 33322 2356777777 499999999999999988876544
No 55
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.23 Score=55.11 Aligned_cols=339 Identities=14% Similarity=0.053 Sum_probs=186.5
Q ss_pred cCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChH-----hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC
Q 007343 92 KVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVA-----NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS 166 (607)
Q Consensus 92 ~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~-----e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~ 166 (607)
.+++.-..+..+.=..-......-+|-.++.++..++.. .--+.+...+.....|.++-||+.|+-+++.+..-
T Consensus 150 ~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg- 228 (823)
T KOG2259|consen 150 CEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG- 228 (823)
T ss_pred CchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-
Confidence 345555566666666555666667777777777777543 23455665577788999999999999999998651
Q ss_pred CCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHH
Q 007343 167 APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLE 246 (607)
Q Consensus 167 p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~ 246 (607)
-.+ .........+.| +|.+..|+.+|+.++.-..+..|....... +...+.+ ..|.++|..+.+.+=-..+..-+
T Consensus 229 -~kL-~~~~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~-~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK 303 (823)
T KOG2259|consen 229 -FKL-SKACYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES-EEEKLKD-AAFSSVCRAVRDRSLSVRVEAAK 303 (823)
T ss_pred -ccc-cHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh-hhhhhHH-HHHHHHHHHHhcCceeeeehHHH
Confidence 111 122355666774 899999999999999988887754321111 1112232 36889999887765556677777
Q ss_pred HHhccCCCChhHHHHHHHHHHHHhcc---------CchHHHHHHHHH--HHhhcCCcc--hhH---HHHH-HHHHHHHHH
Q 007343 247 LVAKYVPLDSNEIFDIMNLLEDRLQH---------ANGAVVLSTIKV--FLHLTLSMT--DVH---QQVY-ERIKAPLLT 309 (607)
Q Consensus 247 lL~~~~~~~~~~~~~il~~l~~~L~~---------~n~aVv~~ai~~--i~~l~~~~~--~~~---~~~~-~~l~~~L~~ 309 (607)
+|+.+...+++- |.+.++..+-+ .-+.-.++.-.- ==.|....+ ... ..++ .-.-+.++.
T Consensus 304 ~lG~~~~vSee~---i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~Vh 380 (823)
T KOG2259|consen 304 ALGEFEQVSEEI---IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVH 380 (823)
T ss_pred HhchHHHhHHHH---HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeee
Confidence 777664332221 12223222211 111111100000 000000000 000 0000 000112222
Q ss_pred HhccCCchhHHHHHHHHHHHHhhCCcccccccceeee-ccCC-CHhHHHHHHHHHHHccCCCCH-HHHHHHHHHHhhcCC
Q 007343 310 LVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYC-QYNE-PSYVKKLKLEMLTAVANESNT-YEIVTELCEYAANVD 386 (607)
Q Consensus 310 ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~-~~~d-~~~Ik~~kL~iL~~l~n~~N~-~~Iv~eL~~y~~~~d 386 (607)
=+.+.--|+|-.+...+..++...|..-..-+. |.+ -.|| ..-||.+++.-|..+++.--+ ++.++.+++-+.+..
T Consensus 381 GlEDEf~EVR~AAV~Sl~~La~ssP~FA~~ald-fLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s 459 (823)
T KOG2259|consen 381 GLEDEFYEVRRAAVASLCSLATSSPGFAVRALD-FLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRS 459 (823)
T ss_pred echHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcC
Confidence 233444577888888888888888764333221 111 1244 466888888888887654222 245555566666667
Q ss_pred HHHHHHHHHHHHHHHcccCCh---HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCC
Q 007343 387 IPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW 443 (607)
Q Consensus 387 ~~~~~~~i~~I~~la~k~~~~---~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~ 443 (607)
++++..+-.-++. .++++. .-|++-+++.+..-. .=.+|++..+.+|-+|+|.+
T Consensus 460 ~dvRe~l~elL~~--~~~~d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~l 516 (823)
T KOG2259|consen 460 VDVREALRELLKN--ARVSDLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRRL 516 (823)
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChhh
Confidence 7776655443322 356653 345555555554321 12457777777777777764
No 56
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.37 E-value=0.54 Score=55.49 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=115.8
Q ss_pred HHHhcCCCcchhhhhhhhhccCCCc-----hhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC
Q 007343 53 SYMTIGIDVSAVFGEMVMCSATSDI-----VLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL 127 (607)
Q Consensus 53 ~~~~~G~d~s~lf~~vi~l~~s~~~-----~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i 127 (607)
.++..-|....++..+++-+.+..+ ...+.+=.++..++..-|-+++--.+.|..-+.+.+...|+.-+..++++
T Consensus 260 ~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~ 339 (1251)
T KOG0414|consen 260 TLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANL 339 (1251)
T ss_pred HHHHHhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3444445567788888887765544 44678888999999989999888888898888889999999999999886
Q ss_pred ChHh------------hHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC-CCCchHHHHHhhcCCCChhHHHH
Q 007343 128 RVAN------------LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI-DADFPPTLKHLMLNDPDPQVVAN 194 (607)
Q Consensus 128 ~~~e------------~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~-~~~~~~~L~~lLl~D~d~~V~~~ 194 (607)
...+ +...+...+..-+.|-+||||-+++....++++....... ..++....... +.|.+..|+-+
T Consensus 340 V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~gr-l~DkSslVRk~ 418 (1251)
T KOG0414|consen 340 VASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGR-LEDKSSLVRKN 418 (1251)
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcc-cccccHHHHHH
Confidence 3322 2233666777788999999999999999999876544321 02233333344 37999999999
Q ss_pred HHHHHHHHHhhcc
Q 007343 195 CLSALQEIWSLEA 207 (607)
Q Consensus 195 a~~~L~ei~~~~~ 207 (607)
|+.++.....+.|
T Consensus 419 Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 419 AIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988877
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.34 E-value=0.0059 Score=58.24 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=76.2
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHH
Q 007343 148 NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIY 227 (607)
Q Consensus 148 ~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~ 227 (607)
+|-||..|+.+++-+...+|..+ +.|.+.+..+| .|+|+.|+.+|+..|..+...+.- -...+++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~i-----------k~k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMI-----------KVKGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCce-----------eehhhhhH
Confidence 58899999999999999999998 57999999995 999999999999999998765431 11223457
Q ss_pred HHHhhcCCCChhHHHHHHHHHhccCCC
Q 007343 228 YLLNRIKEFSEWAQCLVLELVAKYVPL 254 (607)
Q Consensus 228 ~Ll~~l~~~~~w~qi~iL~lL~~~~~~ 254 (607)
.++..+.|.+|..+-..-.++..+...
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 788888899999888888887776543
No 58
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.096 Score=57.67 Aligned_cols=404 Identities=14% Similarity=0.106 Sum_probs=201.6
Q ss_pred HHHHHHHHHH---HhcCCCcchhhhhhhhhccCCCchhHH-HHHHHHHhhccCCC---hHHHHHHHHHHHHcCCCCHHHH
Q 007343 45 RELFKKVISY---MTIGIDVSAVFGEMVMCSATSDIVLKK-MCYLYVGNYAKVNP---DLALLTINFLQRDCKDEDPMIR 117 (607)
Q Consensus 45 ~~~l~kli~~---~~~G~d~s~lf~~vi~l~~s~~~~~Kr-l~YL~l~~~~~~~~---el~~L~iNtl~kDl~~~n~~ir 117 (607)
.+++.+.+.- +..|++.+.......+++.+.++..++ ..|-.+. +.+.+. +.-...+.++.+-..|.++..|
T Consensus 113 q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag-~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~ 191 (569)
T KOG1242|consen 113 QRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAG-LVNGLGIESLKEFGFLDNLSKAIIDKKSALN 191 (569)
T ss_pred HHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHH-HHcCcHHhhhhhhhHHHHHHHHhcccchhhc
Confidence 3444444432 335777777777778888887777643 2332222 222111 1123455667777777665444
Q ss_pred H----HHH----HHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhh-CCCCcCCCCchHHHHHhhcCC--
Q 007343 118 G----LAL----RSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLND-- 186 (607)
Q Consensus 118 ~----lAL----r~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~-~p~~~~~~~~~~~L~~lLl~D-- 186 (607)
- .|. ..+|....|.++ .+.|.|..+..|..++||..|..|.-.+-+. ++..+ ..+++.+..-+..+
T Consensus 192 re~~~~a~~~~~~~Lg~~~EPyiv-~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV--K~llpsll~~l~~~kW 268 (569)
T KOG1242|consen 192 REAALLAFEAAQGNLGPPFEPYIV-PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV--KLLLPSLLGSLLEAKW 268 (569)
T ss_pred HHHHHHHHHHHHHhcCCCCCchHH-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh--hHhhhhhHHHHHHHhh
Confidence 3 232 233333344444 4677888899999999999998888777653 45555 33444333333344
Q ss_pred CChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC-ChhHHHHHHHH
Q 007343 187 PDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFDIMNL 265 (607)
Q Consensus 187 ~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~-~~~~~~~il~~ 265 (607)
+..+.....+.++.++... -....-+.++..+...+.+..+-.+-.-...+.+++.. +..+...+++.
T Consensus 269 rtK~aslellg~m~~~ap~-----------qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~ 337 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPK-----------QLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPT 337 (569)
T ss_pred hhHHHHHHHHHHHHHhchH-----------HHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3444444444444444321 11112234667777777788888887777777777532 23356677777
Q ss_pred HHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceee
Q 007343 266 LEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY 345 (607)
Q Consensus 266 l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~ 345 (607)
+...+.+.+.. +-+|+..+..-+- ...+...-+..+.+.|.+=++.++.+++
T Consensus 338 Lld~l~dp~~~-~~e~~~~L~~ttF-V~~V~~psLalmvpiL~R~l~eRst~~k-------------------------- 389 (569)
T KOG1242|consen 338 LLDALADPSCY-TPECLDSLGATTF-VAEVDAPSLALMVPILKRGLAERSTSIK-------------------------- 389 (569)
T ss_pred HHHHhcCcccc-hHHHHHhhcceee-eeeecchhHHHHHHHHHHHHhhccchhh--------------------------
Confidence 77777766522 2233333322110 0000001122334444333433444443
Q ss_pred eccCCCHhHHHHHHHHH---HHcc-CCCCHH----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHccc-----CCh-HHHH
Q 007343 346 CQYNEPSYVKKLKLEML---TAVA-NESNTY----EIVTELCEYAANVDIPIARESIRAVGKIALQQ-----YDV-NAIV 411 (607)
Q Consensus 346 ~~~~d~~~Ik~~kL~iL---~~l~-n~~N~~----~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~-----~~~-~~~v 411 (607)
+.+..|. ++++ |+..+. .+++.|.+-+.+.+++.|..+.+++|.+-++. ++. .|..
T Consensus 390 ----------r~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~ 459 (569)
T KOG1242|consen 390 ----------RKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELS 459 (569)
T ss_pred ----------hhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHH
Confidence 2222222 2222 333343 45555566666778999999999988776553 222 3433
Q ss_pred HHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhh---hccCCchHHHHHHHHHHhcccCCCCC-----hH
Q 007343 412 DRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS---SQNVQEPKAKAALIWMLGEYSQDMQD-----AP 483 (607)
Q Consensus 412 ~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~---~~~~~~~~~~~~~iwilGEy~~~i~~-----~~ 483 (607)
+.+-..-. +.-.......+..++...-.-. ....+..++ .....++..+-..+|+++=-...... ..
T Consensus 460 e~~~~~k~---~~~~~g~aq~l~evl~~~~v~~--~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~ 534 (569)
T KOG1242|consen 460 ETLTSEKS---LVDRSGAAQDLSEVLAGLGVEK--VEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIH 534 (569)
T ss_pred Hhhccchh---hhhhHHHhhhHHHHHhcccchH--HHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHH
Confidence 33222111 1222233345555555433211 111222222 12333555566667776543322211 33
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHH
Q 007343 484 YILESLTENWEEEPSAEVRLHLLT 507 (607)
Q Consensus 484 ~~l~~l~~~f~~e~~~~vk~~iLt 507 (607)
+++..+++.-.+.+ +.++..++.
T Consensus 535 ~i~~~~~k~~ad~d-e~~~~~~~~ 557 (569)
T KOG1242|consen 535 EILDEFLKGLADND-EKGRDTALE 557 (569)
T ss_pred HHHHHHHHHhhhcC-Cccccchhh
Confidence 44555555555444 444444443
No 59
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.28 E-value=0.021 Score=65.35 Aligned_cols=315 Identities=16% Similarity=0.198 Sum_probs=186.9
Q ss_pred CCHHHHHHHHHHhhcCChHh------hHHHHHHHHhhhcCCCChHHHHHHHHHHHHH--HhhCCCCcCCCCchHHHHHhh
Q 007343 112 EDPMIRGLALRSLCSLRVAN------LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL--YHISAPTCIDADFPPTLKHLM 183 (607)
Q Consensus 112 ~n~~ir~lALr~l~~i~~~e------~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl--~~~~p~~~~~~~~~~~L~~lL 183 (607)
.+...| -|++.+.++.... .-..+++.+.++|...+..+.-.|+..+-|+ |..+.+.+.+.+.++.|.+++
T Consensus 262 QeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 262 QEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHh
Confidence 344455 5566677763321 2334455667778888888877777777775 334445555678999999985
Q ss_pred cCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhH-HH--
Q 007343 184 LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE-IF-- 260 (607)
Q Consensus 184 l~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~-~~-- 260 (607)
..++..++-.|+.+|..+.... +.. ..++....+.+|...+.+. + .+...+.+|...+-.+... .+
T Consensus 341 -~s~~~~l~~~aLrlL~NLSfd~-----~~R---~~mV~~GlIPkLv~LL~d~-~-~~~val~iLy~LS~dd~~r~~f~~ 409 (708)
T PF05804_consen 341 -PSENEDLVNVALRLLFNLSFDP-----ELR---SQMVSLGLIPKLVELLKDP-N-FREVALKILYNLSMDDEARSMFAY 409 (708)
T ss_pred -cCCCHHHHHHHHHHHHHhCcCH-----HHH---HHHHHCCCcHHHHHHhCCC-c-hHHHHHHHHHHhccCHhhHHHHhh
Confidence 7778888999999999886432 111 1222222455666655443 2 3344677776665433211 11
Q ss_pred -HHHHHHHH-HhccCchHHHHHHHHHHHhhcCCcchhHHHHHH--HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc-
Q 007343 261 -DIMNLLED-RLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF- 335 (607)
Q Consensus 261 -~il~~l~~-~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~--~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~- 335 (607)
+.++.+.. ++.++++.|-.+++.+.+.+..+... .+.+++ .+...+.+.++.++ -+.++.+.-+.+..|.
T Consensus 410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~ 484 (708)
T PF05804_consen 410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPL 484 (708)
T ss_pred cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchH
Confidence 23444444 34556677777777777777655322 122221 12222223334444 3344555555555432
Q ss_pred --cccccccee--eeccCCCHhHHHHHHHHHHHccCC-CCHHHHHHH--HHHHhhc------CCHHHHHHHHHHHHHHHc
Q 007343 336 --IFASDYKHF--YCQYNEPSYVKKLKLEMLTAVANE-SNTYEIVTE--LCEYAAN------VDIPIARESIRAVGKIAL 402 (607)
Q Consensus 336 --~~~~~~~~f--~~~~~d~~~Ik~~kL~iL~~l~n~-~N~~~Iv~e--L~~y~~~------~d~~~~~~~i~~I~~la~ 402 (607)
.|.+++..+ .+...|+.......|-+|..|... .++..++++ |..|+.+ +++++.-++|..+|.+|.
T Consensus 485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~ 564 (708)
T PF05804_consen 485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS 564 (708)
T ss_pred HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC
Confidence 344444322 144455666888888888888744 488888876 5566543 466899999999998885
Q ss_pred ccCCh------HHHHHHHHHhhhhcC--chhhHHHHHHHHHHHHhCCCCch
Q 007343 403 QQYDV------NAIVDRLLQFLEMEK--DYVTAEALVLVKDLLRKYPQWSH 445 (607)
Q Consensus 403 k~~~~------~~~v~~ll~ll~~~~--~~v~~e~i~~i~~i~~~~p~~~~ 445 (607)
. +.. ..+++.+++++.... +.++-+++.++.++++. ++.++
T Consensus 565 d-~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~ 613 (708)
T PF05804_consen 565 D-PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETRE 613 (708)
T ss_pred C-HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHH
Confidence 3 321 247999999998765 45666677777777664 44444
No 60
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.28 E-value=0.00075 Score=58.96 Aligned_cols=108 Identities=18% Similarity=0.114 Sum_probs=76.9
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc---CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchh
Q 007343 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (607)
Q Consensus 136 l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~---~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~ 212 (607)
+++.+.+.+.|+++.+|+.|+.++..+...+|+.. .+.+.++.+.++| +|+|+.|+.+|+.+|..+....+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~--- 83 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-KSEDEEVVKAALWALRNLAAGPEDN--- 83 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH-hCCCHHHHHHHHHHHHHHccCcHHH---
Confidence 56677788889999999999999999987654433 2357889999985 8999999999999999998754321
Q ss_pred hhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 007343 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (607)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~ 251 (607)
.........+..|++.+.+.+...+...+.+|...
T Consensus 84 ----~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 84 ----KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred ----HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 11111122455666666666777776666666543
No 61
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.28 E-value=0.00057 Score=59.72 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCCh--Hh----hHH-HHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC---c
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRV--AN----LVE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---C 170 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~--~e----~~~-~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~---~ 170 (607)
+++.+.+-+.++|+.+|..|+.+++++.. ++ +.+ .+++.+.+.+.|+++.||+.|+.++..+....|+. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 45667777788889999999999998864 22 233 55677888899999999999999999998765432 2
Q ss_pred CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 171 ~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
.+.+.++.+.+++ ++.|..+...|+.+|..++
T Consensus 88 ~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhh
Confidence 2357889999985 7888999999888887654
No 62
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.24 E-value=0.87 Score=55.12 Aligned_cols=141 Identities=11% Similarity=0.119 Sum_probs=106.9
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccCCChHHH--HHHHHHHHHcCCCCHHHHHHHHHHhhcC--ChHhhHHHHHHHH
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPL 140 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~--L~iNtl~kDl~~~n~~ir~lALr~l~~i--~~~e~~~~l~~~i 140 (607)
.-.++..+..+...+|-=+-=.++...+-+|.+.. .+--++-.-+.|....||-.|+.-+|.. ..++.++..+..|
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i 897 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQI 897 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 33455667788888887777788888877776522 2233444567788899999999999974 6799999999999
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc
Q 007343 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 141 ~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~ 206 (607)
.....|+.-.|||.|+--+-.+|...|+....++...++.... +|....|.==+.-.+..+|-..
T Consensus 898 ~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv-~DEEg~I~kLv~etf~klWF~p 962 (1692)
T KOG1020|consen 898 IERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP 962 (1692)
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999864444444444443 6765557666677788887644
No 63
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.23 E-value=0.0018 Score=53.67 Aligned_cols=84 Identities=25% Similarity=0.264 Sum_probs=64.3
Q ss_pred hhhhhc-cCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcC
Q 007343 67 EMVMCS-ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (607)
Q Consensus 67 ~vi~l~-~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~ 145 (607)
..++.+ .+++...|.-+.-++..+. ++ -+++.+.+-++|+|+.+|..|+++++.+++++..+.+ .+.+.
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~~--~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~~~~~L----~~~l~ 72 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGELG--DP----EAIPALIELLKDEDPMVRRAAARALGRIGDPEAIPAL----IKLLQ 72 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCCT--HH----HHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHHTHHHH----HHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcC--CH----hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHH----HHHHc
Confidence 345656 7888888888888887553 22 4577888888999999999999999999988766654 45554
Q ss_pred C-CChHHHHHHHHHHH
Q 007343 146 D-NNSYVRTVAVIGVL 160 (607)
Q Consensus 146 d-~~~~VRK~A~lal~ 160 (607)
| ++..||..|+.++.
T Consensus 73 ~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 73 DDDDEVVREAAAEALG 88 (88)
T ss_dssp C-SSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhhcC
Confidence 4 57788999998874
No 64
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.11 E-value=0.37 Score=53.07 Aligned_cols=304 Identities=14% Similarity=0.112 Sum_probs=151.9
Q ss_pred cCCCcchhhhhh-hhhccCCCchhHHHHHHHHHhhccCCChHHHH---------HHHHHHHHcCCCCH--HHHHHHHHHh
Q 007343 57 IGIDVSAVFGEM-VMCSATSDIVLKKMCYLYVGNYAKVNPDLALL---------TINFLQRDCKDEDP--MIRGLALRSL 124 (607)
Q Consensus 57 ~G~d~s~lf~~v-i~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L---------~iNtl~kDl~~~n~--~ir~lALr~l 124 (607)
.||+... .+.| ...+.|+|-+.|+..-++...+.....+-.-- .-....+-....-+ -..-++--.+
T Consensus 435 a~h~tre-~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvil 513 (975)
T COG5181 435 ACHDTRE-HMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVIL 513 (975)
T ss_pred hhhhHHH-HHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHH
Confidence 4566554 3444 46889999999999999999998765442110 00111111111111 1111222333
Q ss_pred hcC-ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCC--------CC--hhHHH
Q 007343 125 CSL-RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND--------PD--PQVVA 193 (607)
Q Consensus 125 ~~i-~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D--------~d--~~V~~ 193 (607)
++. +.+.+ ..-|..-++|+..--||-+|-++-|++..-|.. ++-+.+.+.+ -| ++ .+++.
T Consensus 514 Ak~~g~~~v----~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~----~~dErleerl-~d~il~Afqeq~~t~~~il 584 (975)
T COG5181 514 AKMGGDPRV----SRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL----GFDERLEERL-YDSILNAFQEQDTTVGLIL 584 (975)
T ss_pred HHHcCChHH----HHHHHhhccCCcchhhhhhhHHHHHHHHhcccc----cccHHHHHHH-HHHHHHHHHhccccccEEE
Confidence 332 34444 444556678887666999999999999776654 4444454443 22 11 12222
Q ss_pred HHHHH----HHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCC-----CChhHHHHHHH
Q 007343 194 NCLSA----LQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP-----LDSNEIFDIMN 264 (607)
Q Consensus 194 ~a~~~----L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~-----~~~~~~~~il~ 264 (607)
-++.+ +.-.++ -...+++..+++.|....|-..+...++.+...+ .+.++...+-+
T Consensus 585 ~~f~tv~vsl~~r~k---------------p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~ 649 (975)
T COG5181 585 PCFSTVLVSLEFRGK---------------PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN 649 (975)
T ss_pred ecccceeeehhhccC---------------cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH
Confidence 11111 111000 0113456667777777777777777766665432 12333344445
Q ss_pred HHHHHhccCchHHHHHHHHHHHhhcCCcc-----hhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccccc
Q 007343 265 LLEDRLQHANGAVVLSTIKVFLHLTLSMT-----DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS 339 (607)
Q Consensus 265 ~l~~~L~~~n~aVv~~ai~~i~~l~~~~~-----~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~ 339 (607)
.+-+.|.-..+-|+=..++.+..+..... ....+++-++.+ .|.++..-+.--+...+..|+.+.|+....
T Consensus 650 iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltP----ILrnkh~Kv~~nti~lvg~I~~~~peyi~~ 725 (975)
T COG5181 650 ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTP----ILRNKHQKVVANTIALVGTICMNSPEYIGV 725 (975)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccH----hhhhhhHHHhhhHHHHHHHHHhcCcccCCH
Confidence 55555555566665444444444432211 011222223322 333444445555555555666666552211
Q ss_pred ccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhh
Q 007343 340 DYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLE 419 (607)
Q Consensus 340 ~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~ 419 (607)
.-+-.|.=||.+-+.+-+.+++|.++.+.|-++..... ...+++|++-|+
T Consensus 726 -----------------------------rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP-qdvL~~LlnnLk 775 (975)
T COG5181 726 -----------------------------REWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP-QDVLDILLNNLK 775 (975)
T ss_pred -----------------------------HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH-HHHHHHHHhcch
Confidence 11334444555555556666666666666666654321 134555554444
No 65
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.2 Score=57.35 Aligned_cols=172 Identities=10% Similarity=0.152 Sum_probs=115.3
Q ss_pred HHHHHH-cCCCCHHHHHHHHHHhhc-CChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHH
Q 007343 103 NFLQRD-CKDEDPMIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (607)
Q Consensus 103 Ntl~kD-l~~~n~~ir~lALr~l~~-i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~ 180 (607)
-+++.. +.+.|...|--|++.+=. +...+=...+.+.|.+.....|..+||---+-+.++-+.+|+... -.++.+.
T Consensus 21 ~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--LavNti~ 98 (757)
T COG5096 21 AALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--LAVNTIQ 98 (757)
T ss_pred hhhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHH
Confidence 344455 888899888888776533 322222666778888877788889999888888888888886541 2344444
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHH
Q 007343 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (607)
Q Consensus 181 ~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~ 260 (607)
+= +.|+|+.+++.|+..+..+...+ +..+++.-+.+.+.+.++...-...-.+.++-.-+++...
T Consensus 99 kD-l~d~N~~iR~~AlR~ls~l~~~e--------------l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~ 163 (757)
T COG5096 99 KD-LQDPNEEIRGFALRTLSLLRVKE--------------LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYH 163 (757)
T ss_pred hh-ccCCCHHHHHHHHHHHHhcChHH--------------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhh
Confidence 44 37899999999999888774311 1123455555667788888776665555554433443322
Q ss_pred H--HHHHHHHHhccCchHHHHHHHHHHHhhcCC
Q 007343 261 D--IMNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (607)
Q Consensus 261 ~--il~~l~~~L~~~n~aVv~~ai~~i~~l~~~ 291 (607)
. .+..+..++..++|-|+-+|...+..+.+.
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2 456667777888999999998888877664
No 66
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.03 Score=57.16 Aligned_cols=214 Identities=16% Similarity=0.159 Sum_probs=145.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCCh-Hh-hHHHH-----HHHHhhhcCCCCh--HHHHHHHHHHHHHHh-hCCCCc
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRV-AN-LVEYL-----VGPLGLGLKDNNS--YVRTVAVIGVLKLYH-ISAPTC 170 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~-~e-~~~~l-----~~~i~~~L~d~~~--~VRK~A~lal~kl~~-~~p~~~ 170 (607)
++..|..-|.+++.-+|--|+=++|+|.. .+ +-+++ ..++..++.++.+ ..-|+|--.+-.+++ ++|.
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~-- 235 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP-- 235 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC--
Confidence 46778888999999999999999999943 33 33333 2455666666555 344678888888876 4554
Q ss_pred CCCCc------hHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHH
Q 007343 171 IDADF------PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLV 244 (607)
Q Consensus 171 ~~~~~------~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~i 244 (607)
++| ++.|.+++ ...|+.|+..|+=++..+..-.. .|.+ ..++..+..+|+..|...+--.|.-+
T Consensus 236 --P~w~~isqalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~-----E~i~--avld~g~~~RLvElLs~~sa~iqtPa 305 (526)
T COG5064 236 --PDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPN-----EKIQ--AVLDVGIPGRLVELLSHESAKIQTPA 305 (526)
T ss_pred --CchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcH-----HHHH--HHHhcCCcHHHHHHhcCccccccCHH
Confidence 444 67788874 88999999999999988753211 1111 22333345678888877777788889
Q ss_pred HHHHhccCCCChhHHHH-----HHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchh
Q 007343 245 LELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQ 318 (607)
Q Consensus 245 L~lL~~~~~~~~~~~~~-----il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni 318 (607)
||.+....-.++....- .+..+.++|+|.-..+.-||+-++-.++.....-.+.+++ -+.+||+.+|++-+--+
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~ 385 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKI 385 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 99998876554433332 4667888898887889999999998887654432234443 47788999987655444
Q ss_pred HHHHHHHH
Q 007343 319 SYAVLSHL 326 (607)
Q Consensus 319 ~y~~L~~i 326 (607)
|--|-=++
T Consensus 386 kKEACWAi 393 (526)
T COG5064 386 KKEACWAI 393 (526)
T ss_pred HHHHHHHH
Confidence 44443333
No 67
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.98 E-value=0.32 Score=54.06 Aligned_cols=135 Identities=20% Similarity=0.205 Sum_probs=90.8
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCC--hHhhHHHHHHHHhh
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGL 142 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~i~~ 142 (607)
|-.++..... +...|+|+=-++..|++.-|++.--++|++..=+.|.+..||.-|++.|..++ .++.+.-+...+.+
T Consensus 25 y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 25 YKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp HHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 4455555544 68899999999999999999999999999999999999999999999999996 47889999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 143 ~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
+|...++-.+..+=-++..+++.+|-... .++...+..- ...|..|+--++..|.+-.
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~tL-~~lf~~i~~~--~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKGTL-TGLFSQIESS--KSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHH-----HS-HHHHHHHHHHHHHHG
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhc--ccCchHHHHHHHHHHHHHH
Confidence 99988876655444455555555665431 2233333211 1345677777777665443
No 68
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.94 E-value=0.023 Score=56.22 Aligned_cols=181 Identities=16% Similarity=0.123 Sum_probs=112.6
Q ss_pred cCCCChHHHHHHHHHHHHHHhhC-CCCcCCCCchHHH-------HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhh
Q 007343 144 LKDNNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTL-------KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (607)
Q Consensus 144 L~d~~~~VRK~A~lal~kl~~~~-p~~~~~~~~~~~L-------~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~ 215 (607)
-.+.+...|..|+..+-++...+ |... .+.+.+.+ ... +.|....|...|+.++..+...-+..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~-l~d~Rs~v~~~A~~~l~~l~~~l~~~------ 87 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQ-LSDLRSKVSKTACQLLSDLARQLGSH------ 87 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH--S-HH---HHHHHHHHHHHHHHHHGGG------
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhHh------
Confidence 37788999999999999998877 2211 12343433 344 36778889999999999998754321
Q ss_pred hHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHH-HHHHHHHhccCchHHHHHHHHHHHhhcCCcc-
Q 007343 216 EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-MNLLEDRLQHANGAVVLSTIKVFLHLTLSMT- 293 (607)
Q Consensus 216 ~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~i-l~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~- 293 (607)
... ....++..|++.+.+...+......+.|..+...-+ -...+ ...+....++.|+.|..+|++.+..+....+
T Consensus 88 -~~~-~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 88 -FEP-YADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp -GHH-HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred -HHH-HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 101 112356778888888888888777666665543322 11134 6778888899999999999988766543222
Q ss_pred ---hhH-HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc
Q 007343 294 ---DVH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (607)
Q Consensus 294 ---~~~-~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~ 335 (607)
.+. ...++.+.+.+..++++.++++|..+-+.+..+.+..|+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 222 223567888889999999999999999999999888775
No 69
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.94 E-value=0.92 Score=50.10 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhhCCCCcC--CCCchH
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DADFPP 177 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~-~~~VRK~A~lal~kl~~~~p~~~~--~~~~~~ 177 (607)
.+.+++-|..+.+|++|--.-|+.|-+...-=.+.+.|.+..+..+. +.--|.+.+-++.++.....-.+. -..+.+
T Consensus 282 ~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ 361 (975)
T COG5181 282 SVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLK 361 (975)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHH
Confidence 35678889999999999888777776544433556667777766554 888999999999998876543321 135677
Q ss_pred HHHHhhcCCCChhHH---HHHHHHHHHH
Q 007343 178 TLKHLMLNDPDPQVV---ANCLSALQEI 202 (607)
Q Consensus 178 ~L~~lLl~D~d~~V~---~~a~~~L~ei 202 (607)
-+.++| .|...-|+ +++++.+.|.
T Consensus 362 ci~~~l-~D~~~~vRi~tA~alS~lae~ 388 (975)
T COG5181 362 CISKLL-KDRSRFVRIDTANALSYLAEL 388 (975)
T ss_pred HHHHHh-hccceeeeehhHhHHHHHHHh
Confidence 777874 77766554 4455555544
No 70
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.93 E-value=0.019 Score=57.93 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=98.0
Q ss_pred CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcch-HHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 007343 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK-PVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (607)
Q Consensus 173 ~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~-~~~~~Ll~~l~~~~~w~qi~iL~lL~~~ 251 (607)
++-++.|..+|....||.+...|+.++........ ..+ .+.. ..+.-+.+.+++++|+.+.+.+..|...
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~------nq~---~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl 81 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPF------NQD---IIRDLGGISLIGSLLNDPNPSVREKALNALNNL 81 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChh------HHH---HHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhc
Confidence 34456777776456799999999999988654221 111 1110 1234455667789999999999999987
Q ss_pred CCCCh--hHHHHHHHHH-HHHhcc-CchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 007343 252 VPLDS--NEIFDIMNLL-EDRLQH-ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (607)
Q Consensus 252 ~~~~~--~~~~~il~~l-~~~L~~-~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~ 327 (607)
....+ ......++.+ .....+ .|+.+..++.+++.+++... +.+.. +.+..+-+.+++++++.++|.-+|+.+.
T Consensus 82 s~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~-l~~~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 82 SVNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHM-LANYIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred CCChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhh-HHhhHHHHHHHHHcCChHHHHHHHHHHH
Confidence 65432 2223334333 333443 47889999999999997643 22333 3334455778999999999999999887
Q ss_pred HHHhh
Q 007343 328 ILVMR 332 (607)
Q Consensus 328 ~l~~~ 332 (607)
.+...
T Consensus 160 nLS~n 164 (254)
T PF04826_consen 160 NLSEN 164 (254)
T ss_pred HhccC
Confidence 76543
No 71
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.92 E-value=0.0082 Score=66.15 Aligned_cols=194 Identities=15% Similarity=0.131 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHH-hcCCC-cchhhhhhh-hhccC----CCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcC-CCCHH
Q 007343 44 KRELFKKVISYM-TIGID-VSAVFGEMV-MCSAT----SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPM 115 (607)
Q Consensus 44 k~~~l~kli~~~-~~G~d-~s~lf~~vi-~l~~s----~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~-~~n~~ 115 (607)
=.+++.-+=--. .-|+. +-.-|..++ +..++ +|.++-+.+|+.+..+.--..+...---..+..-+. +|+|.
T Consensus 870 f~da~~fikE~ElLyGeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~ 949 (1128)
T COG5098 870 FVDAFFFIKEKELLYGEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPR 949 (1128)
T ss_pred HHHHHHHHHHHHHhhchhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcc
Confidence 344443333222 23643 323355554 45544 678888999998866543333333333344444454 99999
Q ss_pred HHHHHHHHhhcCC--hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHH
Q 007343 116 IRGLALRSLCSLR--VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVA 193 (607)
Q Consensus 116 ir~lALr~l~~i~--~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~ 193 (607)
+|+.|.-.||.+. -..+++.....+-+.|.|.+..|||++.+.+.-+.-...=.+ .+....+..+ +.|+|..+--
T Consensus 950 IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KV--KGqlg~ma~~-L~deda~Isd 1026 (1128)
T COG5098 950 IRANAVVGLGDFLVCFNTTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKV--KGQLGKMALL-LTDEDAEISD 1026 (1128)
T ss_pred eeccceeeccccceehhhhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceee--ccchhhhHhh-ccCCcchHHH
Confidence 9999999999873 345555555566688899999999999999998765443333 5777778777 5999999887
Q ss_pred HHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHH---HHHHHHHhccCC
Q 007343 194 NCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQ---CLVLELVAKYVP 253 (607)
Q Consensus 194 ~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~q---i~iL~lL~~~~~ 253 (607)
-|=..+.++++++...+ - -+.-+...+...++-+| -.|+++|..+..
T Consensus 1027 mar~fft~~a~KdNt~y----n---------~fidifs~ls~~ae~g~e~fk~II~FLt~fI~ 1076 (1128)
T COG5098 1027 MARHFFTQIAKKDNTMY----N---------GFIDIFSTLSSDAENGQEPFKLIIGFLTDFIS 1076 (1128)
T ss_pred HHHHHHHHHHhcccchh----h---------hhHHHHHHcCchhhcCCCcHHHHHHHHHHHHH
Confidence 78888889987654321 0 12223334443333333 467888887753
No 72
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.13 Score=53.09 Aligned_cols=284 Identities=14% Similarity=0.102 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHHHHhcCCC-----cch-hhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHH------HHHHHHHHHc
Q 007343 42 DSKRELFKKVISYMTIGID-----VSA-VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL------LTINFLQRDC 109 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d-----~s~-lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~------L~iNtl~kDl 109 (607)
..++. ..-.+..||..++ |.. ..+-.+.+..+.|...+--+--++++++-....--+ -++..+..-+
T Consensus 182 rvqrn-atgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lm 260 (550)
T KOG4224|consen 182 RVQRN-ATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLM 260 (550)
T ss_pred hHHHH-HHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHH
Confidence 33444 4466677777654 222 344457888899988877666666666532111111 2466777777
Q ss_pred CCCCHHHHHHHHHHhhcCChH-h----hHHH-HHHHHhhhcCCCChHHHHHHHHHH--HHHHhhCCCCcCCCCchHHHHH
Q 007343 110 KDEDPMIRGLALRSLCSLRVA-N----LVEY-LVGPLGLGLKDNNSYVRTVAVIGV--LKLYHISAPTCIDADFPPTLKH 181 (607)
Q Consensus 110 ~~~n~~ir~lALr~l~~i~~~-e----~~~~-l~~~i~~~L~d~~~~VRK~A~lal--~kl~~~~p~~~~~~~~~~~L~~ 181 (607)
.|+++-+.|.|--+++++... + +.+. -+|.+.++++|+.--.=-..+.|+ ..++..+...+.+.+|...|.+
T Consensus 261 d~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVr 340 (550)
T KOG4224|consen 261 DDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVR 340 (550)
T ss_pred hCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHH
Confidence 788999998887777777543 2 2221 235677777665432223555666 5566667677777899999999
Q ss_pred hhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC-ChhHHH
Q 007343 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIF 260 (607)
Q Consensus 182 lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~-~~~~~~ 260 (607)
+|..-.+.....+|+..|-.+...+.. +....+....+.++...+.+..--.|..+=-.++.+.-. +.++.+
T Consensus 341 lL~~~dnEeiqchAvstLrnLAasse~-------n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~l 413 (550)
T KOG4224|consen 341 LLRAGDNEEIQCHAVSTLRNLAASSEH-------NVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEAL 413 (550)
T ss_pred HHhcCCchhhhhhHHHHHHHHhhhhhh-------hhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHH
Confidence 863334556899999999888753221 111112222455665555555555666665555544322 222222
Q ss_pred ---HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhH--HHH----HHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 007343 261 ---DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVH--QQV----YERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (607)
Q Consensus 261 ---~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~--~~~----~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~ 331 (607)
.+++.+.+++-+.+.-|.=.|+..++.+.....++. .+. .+.+...|.+|+.|.+.-.+-++.-.|.+++.
T Consensus 414 ld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle 493 (550)
T KOG4224|consen 414 LDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLE 493 (550)
T ss_pred hhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 366777888877766666666666666654333221 011 13466778899987666677777777777765
Q ss_pred hC
Q 007343 332 RA 333 (607)
Q Consensus 332 ~~ 333 (607)
.+
T Consensus 494 ~h 495 (550)
T KOG4224|consen 494 DH 495 (550)
T ss_pred hC
Confidence 54
No 73
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.91 E-value=0.016 Score=67.63 Aligned_cols=235 Identities=13% Similarity=0.122 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHHHhcCCCc---------chhhhhhhhhccCCCchhHHHHHHH-HHhhccCCChHHHHHHHHHHHH--
Q 007343 41 DDSKRELFKKVISYMTIGIDV---------SAVFGEMVMCSATSDIVLKKMCYLY-VGNYAKVNPDLALLTINFLQRD-- 108 (607)
Q Consensus 41 ~~~k~~~l~kli~~~~~G~d~---------s~lf~~vi~l~~s~~~~~Krl~YL~-l~~~~~~~~el~~L~iNtl~kD-- 108 (607)
.+-|..||.-+..+..+=.|+ ..+||+.-.+...++-+.=|++|-- +..++..---. +..+-.+...
T Consensus 476 a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rF-le~~q~~~~~g~ 554 (1431)
T KOG1240|consen 476 ADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRF-LELTQELRQAGM 554 (1431)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHH-HHHHHHHHhccc
Confidence 456777777777766655443 3456666566655465656766642 22222111111 1111121111
Q ss_pred cCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCC
Q 007343 109 CKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPD 188 (607)
Q Consensus 109 l~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d 188 (607)
++++|.. -+-..-.+-....+.+.+...+..++.|+.|+||++=+-+++.++......-.+.-++..|...| +|.|
T Consensus 555 ~n~~nse---t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfL-NDkD 630 (1431)
T KOG1240|consen 555 LNDPNSE---TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFL-NDKD 630 (1431)
T ss_pred ccCcccc---cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHh-cCcc
Confidence 2333322 11111222234456777777888899999999999999888888876654332334678899984 9999
Q ss_pred hhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC---ChhHHHHHHHH
Q 007343 189 PQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL---DSNEIFDIMNL 265 (607)
Q Consensus 189 ~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~---~~~~~~~il~~ 265 (607)
...+++-+-.+..++---+.-. +..-++.-|...+.|..|...+..|+.|..++.. ......++++.
T Consensus 631 w~LR~aFfdsI~gvsi~VG~rs----------~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~ 700 (1431)
T KOG1240|consen 631 WRLRGAFFDSIVGVSIFVGWRS----------VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQD 700 (1431)
T ss_pred HHHHHHHHhhccceEEEEeeee----------HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHh
Confidence 9998875555544321111000 0011344555678999999999999999877543 33455678888
Q ss_pred HHHHhccCchHHHHHHHHHHHhhcC
Q 007343 266 LEDRLQHANGAVVLSTIKVFLHLTL 290 (607)
Q Consensus 266 l~~~L~~~n~aVv~~ai~~i~~l~~ 290 (607)
+.++|-|.|.=|..+++-.|.....
T Consensus 701 v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 701 VLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred hhhheeCchHHHHHHHHHHHHHHHh
Confidence 8999999998887777777665543
No 74
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.81 E-value=0.01 Score=65.52 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=108.1
Q ss_pred CCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC-----ChHhhHH-------HHHHHHh
Q 007343 74 TSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL-----RVANLVE-------YLVGPLG 141 (607)
Q Consensus 74 s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i-----~~~e~~~-------~l~~~i~ 141 (607)
.+|..--|-+-+|+..+..-.|.+++---+.+-+-|.+..-..||.-+...+++ ..++|.+ .++.-+.
T Consensus 273 ~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ 352 (1128)
T COG5098 273 LPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLV 352 (1128)
T ss_pred cccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHH
Confidence 344444467778888888889999888899999999999999999999999997 3455544 5666677
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhCCCCcC-CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCI-DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 142 ~~L~d~~~~VRK~A~lal~kl~~~~p~~~~-~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
..+.|.+||+|-||+..+.|+|..+.-... ..+++..+...| .|....|+.+|+.++..+.-+.|
T Consensus 353 ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~l-qDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 353 ERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRL-QDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHhcCC
Confidence 788999999999999999999987655442 246777777774 89999999999999998876554
No 75
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.80 E-value=0.003 Score=47.57 Aligned_cols=49 Identities=27% Similarity=0.270 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhcCC------hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 007343 114 PMIRGLALRSLCSLR------VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (607)
Q Consensus 114 ~~ir~lALr~l~~i~------~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl 162 (607)
|.+|..|+.+||.+. .....+.+++.+..+|.|+++.||.+|+.|+.++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999874 1345678888889999999999999999998754
No 76
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.78 E-value=0.44 Score=56.28 Aligned_cols=266 Identities=16% Similarity=0.176 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCh----------HhhHHHHHHHHhhhcCC-CChHHHHHHHHHHHHHHh-
Q 007343 97 LALLTINFLQRDCKDEDPMIRGLALRSLCSLRV----------ANLVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYH- 164 (607)
Q Consensus 97 l~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~----------~e~~~~l~~~i~~~L~d-~~~~VRK~A~lal~kl~~- 164 (607)
.+--+..-+.--+.|+.+.||+.||.|++.+-. .-+.|++.|.+..++.| ...+||-+=|-|+.++.+
T Consensus 459 ~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 459 KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 344788999999999999999999999998621 23578999999999999 667898877766665421
Q ss_pred -----------------hCCCC--cCCCC-------c----hHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhh
Q 007343 165 -----------------ISAPT--CIDAD-------F----PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (607)
Q Consensus 165 -----------------~~p~~--~~~~~-------~----~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~ 214 (607)
.+|+. ..+.. + -+.+.++ +.|+++.|..+.+..+..++.--+.. ..
T Consensus 539 A~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~---ks 614 (1431)
T KOG1240|consen 539 AYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE---KS 614 (1431)
T ss_pred HHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc---cc
Confidence 12332 11111 1 2233454 68999999998887777776432210 00
Q ss_pred hhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhc---cC-CCChhHHHHHHHHHHHHhccCchHHHHHHHHH---HHh
Q 007343 215 REREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK---YV-PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKV---FLH 287 (607)
Q Consensus 215 ~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~---~~-~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~---i~~ 287 (607)
.++ ++.+|+.-|++-++-+.+...+-+.- |. +.. ..+-++..+..-|+....+|+..|..+ +++
T Consensus 615 ---ND~----iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik 685 (1431)
T KOG1240|consen 615 ---NDV----ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK 685 (1431)
T ss_pred ---ccc----hHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH
Confidence 011 47788888888866688888887773 32 221 223456777777778889998655554 455
Q ss_pred hcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc-----ccccccceeeeccCCCHhHHHHHHHHH
Q 007343 288 LTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-----IFASDYKHFYCQYNEPSYVKKLKLEML 362 (607)
Q Consensus 288 l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~-----~~~~~~~~f~~~~~d~~~Ik~~kL~iL 362 (607)
++.-.. ..+..+..-..-||-..+.=+|+.++..|..+...-.. .+.|-++-|+- .+. +...+.++|
T Consensus 686 ~~ll~K----~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~--~~v--~~i~s~~~L 757 (1431)
T KOG1240|consen 686 LGLLRK----PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE--RPV--IQIESKEVL 757 (1431)
T ss_pred hcccch----HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh--ccH--hhhcchHHH
Confidence 443211 11222222233455567777899999988877765322 12222222221 111 334455555
Q ss_pred HHccCCCCHHHHHHHHHHHhh
Q 007343 363 TAVANESNTYEIVTELCEYAA 383 (607)
Q Consensus 363 ~~l~n~~N~~~Iv~eL~~y~~ 383 (607)
..-+-+-=-..+.+.+..+-.
T Consensus 758 lsclkpPVsRsv~~~l~r~~~ 778 (1431)
T KOG1240|consen 758 LSCLKPPVSRSVFNQLLRWSD 778 (1431)
T ss_pred HHHhcCCCcHHHHHHHHHHhh
Confidence 554444444555555555533
No 77
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.66 E-value=0.0027 Score=41.90 Aligned_cols=30 Identities=23% Similarity=0.049 Sum_probs=25.1
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHhh
Q 007343 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHI 165 (607)
Q Consensus 136 l~~~i~~~L~d~~~~VRK~A~lal~kl~~~ 165 (607)
++|.+.++++|++|.||..|+.|+.++.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467888999999999999999999988753
No 78
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=1.6 Score=48.75 Aligned_cols=387 Identities=12% Similarity=0.058 Sum_probs=217.2
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHh-hcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcch
Q 007343 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL-MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (607)
Q Consensus 145 ~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~l-Ll~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~ 223 (607)
.|+++.+|||-+.-...+ ...++... .+.+-..-.+ +..+.+..|++.-+..+..+...-+.+. ....+.+.
T Consensus 89 fDs~~s~~~K~~~l~~~l-~~~~~~~s-~d~I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~-----~~i~l~~~ 161 (823)
T KOG2259|consen 89 FDSDESSRKKLAILLGIL-EADFENGS-TDAISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEED-----IYILLLHG 161 (823)
T ss_pred ccccchhhhHHHHHhhHh-hhhhccCc-hhHHHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchh-----hHHHHHhh
Confidence 578888998877666655 33333221 1222222221 2356677788777666666543322110 00011111
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHH
Q 007343 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERI 303 (607)
Q Consensus 224 ~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l 303 (607)
....-.......+--.+....-.|+.....-+.+.......+..+.....+.|.-.|+..++.+... ..+...+++++
T Consensus 162 -~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~~~Y~~A 239 (823)
T KOG2259|consen 162 -VAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSKACYSRA 239 (823)
T ss_pred -hHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccHHHHHHH
Confidence 0000001111223333333333334333333345555566666666778899999999999988762 33445555554
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc---cccccc----ee--eec--cCCCHhHHHHHHHHHHHccCC--CC
Q 007343 304 KAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI---FASDYK----HF--YCQ--YNEPSYVKKLKLEMLTAVANE--SN 370 (607)
Q Consensus 304 ~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~---~~~~~~----~f--~~~--~~d~~~Ik~~kL~iL~~l~n~--~N 370 (607)
.+++++.+..+|-.|++.+.....++|.- .+.+.+ .| .|. .|-...||..+-..|-.+.+- +=
T Consensus 240 ----~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~ 315 (823)
T KOG2259|consen 240 ----VKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI 315 (823)
T ss_pred ----HHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH
Confidence 46788888899999999999888888632 222222 22 243 233456777777666555322 11
Q ss_pred HHHHHH-HHHH---------------Hhh------------------------------------cC-C--HHHHHHHHH
Q 007343 371 TYEIVT-ELCE---------------YAA------------------------------------NV-D--IPIARESIR 395 (607)
Q Consensus 371 ~~~Iv~-eL~~---------------y~~------------------------------------~~-d--~~~~~~~i~ 395 (607)
+.+.++ +++. |.. .. | .+.++.+|.
T Consensus 316 i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~ 395 (823)
T KOG2259|consen 316 IQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVA 395 (823)
T ss_pred HHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHH
Confidence 222221 1111 111 11 2 256789999
Q ss_pred HHHHHHcccCCh-HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhc
Q 007343 396 AVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGE 474 (607)
Q Consensus 396 ~I~~la~k~~~~-~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGE 474 (607)
+++.+|..-|+. ..+++.|++.+....+.|.-.++..++.|... -.++++.+..+...+.+ ..++++.++--++|-
T Consensus 396 Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~-l~i~eeql~~il~~L~D--~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 396 SLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVH-LAIREEQLRQILESLED--RSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-heecHHHHHHHHHHHHh--cCHHHHHHHHHHHHh
Confidence 999999988884 57999999999988778888888888887665 45566555444444333 246777777666654
Q ss_pred ccCCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhh-cC-CChhHHhHHHHHHHH
Q 007343 475 YSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGL-AD-FHQDVHDRALFYHRL 549 (607)
Q Consensus 475 y~~~i~~-~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~-~d-~~~dvrdRA~~y~~L 549 (607)
---.-.+ ....+..+.++...- |.=|-.++.+..++--+++.....+..+++..-. .. ..+++-|+++.-.-+
T Consensus 473 ~~~~d~~~i~m~v~~lL~~L~ky--PqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~kh~~f~t~e~s~ed~~y~akLi 548 (823)
T KOG2259|consen 473 ARVSDLECIDMCVAHLLKNLGKY--PQDRDEILRCMGRIGQNHRRLVLSNMGRFLEKHTSFATIEPSLEDGFYIAKLI 548 (823)
T ss_pred cCCCcHHHHHHHHHHHHHHhhhC--CCCcHHHHHHHHHHhccChhhHHHHHHHHHHhcccccccCccccChhhhhhhh
Confidence 2110011 122334444443332 2224468888888887777667777777775433 23 467777776654433
No 79
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.44 Score=54.33 Aligned_cols=179 Identities=20% Similarity=0.173 Sum_probs=117.5
Q ss_pred HHHHHHHHcCCC-CHHHHHHHHHHhhcC---ChHh-----hHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhhCCCCc
Q 007343 101 TINFLQRDCKDE-DPMIRGLALRSLCSL---RVAN-----LVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 101 ~iNtl~kDl~~~-n~~ir~lALr~l~~i---~~~e-----~~~~l~~~i~~~L~d~-~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
=.+.|...++.. +|...--||.-||.+ ++++ .++.++|.+..+|+|. ++.+---|+-|+..++...|..+
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 345666667665 899999999998874 4444 3778899999999987 68999999999999999999865
Q ss_pred ---CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHH
Q 007343 171 ---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLEL 247 (607)
Q Consensus 171 ---~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~l 247 (607)
-+.+.++.+...|+.=+--.|.=.++.+|..|.+..|. .|.... .+...+.-+.=++--.|-..|-+
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~----AiL~AG------~l~a~LsylDFFSi~aQR~Alai 317 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK----AILQAG------ALSAVLSYLDFFSIHAQRVALAI 317 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH----HHHhcc------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 23556776665544434445666788888888876553 111100 01111111111344567777777
Q ss_pred HhccC----CCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhc
Q 007343 248 VAKYV----PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (607)
Q Consensus 248 L~~~~----~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~ 289 (607)
.+..| +++..-.-+.++.|.++|++...-++-.+.-|+..+.
T Consensus 318 aaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 318 AANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 66655 3444444556777889999887666655555665554
No 80
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.61 E-value=0.0066 Score=51.73 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=55.4
Q ss_pred hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCC--CCchHHHHHhhcCCCChhHHHHHH
Q 007343 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLMLNDPDPQVVANCL 196 (607)
Q Consensus 129 ~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~--~~~~~~L~~lLl~D~d~~V~~~a~ 196 (607)
..+..+.++++|.+++.|+++-||-.|+.|++.+.+..++.+.. .+..+.|.++ ..|+|+.|..+|-
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-SADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhHHHHHH
Confidence 56788999999999999999999999999999999887765521 3455666776 4999999998873
No 81
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.48 E-value=2.1 Score=48.14 Aligned_cols=94 Identities=28% Similarity=0.315 Sum_probs=58.6
Q ss_pred HHHHHcCCCCHHHHHHHHHHhhcC------ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchH
Q 007343 104 FLQRDCKDEDPMIRGLALRSLCSL------RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (607)
Q Consensus 104 tl~kDl~~~n~~ir~lALr~l~~i------~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~ 177 (607)
.+.+...+++--||-..+.-++.+ ...++..-+...+..-+.|..|.||.-|+.|+.|+-. +|.. ++-....
T Consensus 89 hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~-d~~d-ee~~v~n 166 (892)
T KOG2025|consen 89 HLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQG-DPKD-EECPVVN 166 (892)
T ss_pred HHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhc-CCCC-CcccHHH
Confidence 344455555555554444433333 2345566666666667788889999999998888742 2211 1124567
Q ss_pred HHHHhhcCCCChhHHHHHHHHH
Q 007343 178 TLKHLMLNDPDPQVVANCLSAL 199 (607)
Q Consensus 178 ~L~~lLl~D~d~~V~~~a~~~L 199 (607)
.+..++.+|+++.|+.+|+.-+
T Consensus 167 ~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 167 LLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHHHHHhcCCcHHHHHHHHHhh
Confidence 7777777888888888876544
No 82
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.77 Score=55.80 Aligned_cols=242 Identities=14% Similarity=0.160 Sum_probs=148.8
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceee----eccC-CCHhHHHHHHHHHHHc--cCCCCHHHHHHHHH
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY----CQYN-EPSYVKKLKLEMLTAV--ANESNTYEIVTELC 379 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~----~~~~-d~~~Ik~~kL~iL~~l--~n~~N~~~Iv~eL~ 379 (607)
|..|++.. ++..--|.+.-..++.+.+....+.+..|+ +.+. --..++..--++++.| +...-+-.++.+|.
T Consensus 187 l~~lv~~~-~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~ 265 (1266)
T KOG1525|consen 187 LENLVKPG-RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLE 265 (1266)
T ss_pred HHHhccCC-CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555433 333333444444445554444444444443 2221 2244666666777775 45556667888899
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHcccCC--hHHHHHHHHHhhh---hcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhh
Q 007343 380 EYAANVDIPIARESIRAVGKIALQQYD--VNAIVDRLLQFLE---MEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSI 454 (607)
Q Consensus 380 ~y~~~~d~~~~~~~i~~I~~la~k~~~--~~~~v~~ll~ll~---~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l 454 (607)
..+.+.+.+++.+++.-+|++-..... ...|-++...++. .....|.-+++....+++.++|+..+... .+..+
T Consensus 266 ~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~-~~~~l 344 (1266)
T KOG1525|consen 266 FELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAST-ILLAL 344 (1266)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHH-HHHHH
Confidence 999999999999999999987654322 1113333333333 33456788888999999999998765422 22222
Q ss_pred hhccCCchHHHHHHHHHHhccc--CC-CCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcC---------------
Q 007343 455 SSQNVQEPKAKAALIWMLGEYS--QD-MQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR--------------- 516 (607)
Q Consensus 455 ~~~~~~~~~~~~~~iwilGEy~--~~-i~~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~--------------- 516 (607)
.....|++.+....-+++... .. ....+.++..+.++..+-. ..||.+.+..++++|-+.
T Consensus 345 -~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk-~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~ 422 (1266)
T KOG1525|consen 345 -RERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKK-IKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPF 422 (1266)
T ss_pred -HhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 122234444433333333322 11 1122338888888888888 999999999999999851
Q ss_pred ---Cc-----------hhHHHHHHHHHHhhcCCChhHHhHHHHHHHHccC
Q 007343 517 ---PP-----------ETQKVLGAALAAGLADFHQDVHDRALFYHRLLQY 552 (607)
Q Consensus 517 ---p~-----------~~~~~~~~~l~~~~~d~~~dvrdRA~~y~~Ll~~ 552 (607)
|+ +.+.++..+|..+....++++|+|-.-.+.++..
T Consensus 423 swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 423 SWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred cccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Confidence 11 1235667888888888899999999988888876
No 83
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=1.7 Score=48.19 Aligned_cols=133 Identities=14% Similarity=0.017 Sum_probs=80.7
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCC-CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcch
Q 007343 145 KDNNSYVRTVAVIGVLKLYHISAP-TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (607)
Q Consensus 145 ~d~~~~VRK~A~lal~kl~~~~p~-~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~ 223 (607)
.|+.+.||++=+-+....+..+.+ .+ .++.+...+.|.++.+..+.-|.+...+....+-... +....
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v--~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~---------d~~~~ 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV--LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV---------DPRPI 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH--HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc---------Ccchh
Confidence 789999999777777666655433 22 3566666666544555555554444444444332211 11223
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCCCChh-HHHHHHHHHHHHhccCchHHHHHHHHHHHhh
Q 007343 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (607)
Q Consensus 224 ~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~-~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l 288 (607)
+++..+++.+..+++..|.....+|..+...... ....+.+.+...+.+...+=...++.-+-.+
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~ 161 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGL 161 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHH
Confidence 4688899999999999999999998877654322 2334555566666655555555555544333
No 84
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.27 E-value=0.72 Score=50.50 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=62.1
Q ss_pred HHHhhccCCChHHH-HHHHHHHHHcCCCCHHHHHHHHHHhhcCCh-------HhhHHHHHHHHhhhcCCCChHHHHHHHH
Q 007343 86 YVGNYAKVNPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSLRV-------ANLVEYLVGPLGLGLKDNNSYVRTVAVI 157 (607)
Q Consensus 86 ~l~~~~~~~~el~~-L~iNtl~kDl~~~n~~ir~lALr~l~~i~~-------~e~~~~l~~~i~~~L~d~~~~VRK~A~l 157 (607)
.+..|+....|..+ -+--.+...++++|-..|-.|..++|++.. -.+++...|.|....+|+.-.|+-+++-
T Consensus 351 CLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAw 430 (858)
T COG5215 351 CLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAW 430 (858)
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHH
Confidence 33444444444333 344556678899999999999999999832 2357777888888889999999999999
Q ss_pred HHHHHHhhCCCCc
Q 007343 158 GVLKLYHISAPTC 170 (607)
Q Consensus 158 al~kl~~~~p~~~ 170 (607)
|++++-..-|+.+
T Consensus 431 c~g~iad~va~~i 443 (858)
T COG5215 431 CFGAIADHVAMII 443 (858)
T ss_pred HHHHHHHHHHHhc
Confidence 9999887666655
No 85
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.18 E-value=1.2 Score=51.28 Aligned_cols=336 Identities=16% Similarity=0.164 Sum_probs=174.4
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhcc--CCChHH--HHHHHHHHHHcCCCCHHHHHHHHHHhhcCCh-HhhHHH----
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAK--VNPDLA--LLTINFLQRDCKDEDPMIRGLALRSLCSLRV-ANLVEY---- 135 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~--~~~el~--~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~-~e~~~~---- 135 (607)
+.-.++++.+++.++.-++.-++..+.- +|.+.+ .=++..+.|-+.++|+..+-.|++.|.++.. +++...
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSL 371 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence 4445678888898888888888877753 333321 1357889999999999999999999999954 333322
Q ss_pred -HHHHHhhhcCCCChHHHHHHHHHHHHHHhhC--CCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchh
Q 007343 136 -LVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS--APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (607)
Q Consensus 136 -l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~--p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~ 212 (607)
++|.+...+.|++ .|-.|.-.++.+...+ ...+...+.++.+.++|+.-+++.|-..++.++..++.... ....
T Consensus 372 GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naql 448 (708)
T PF05804_consen 372 GLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR-NAQL 448 (708)
T ss_pred CCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHH
Confidence 3466777777654 3333332222222111 11222346678887776566677676666666666654321 1111
Q ss_pred hhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHH---HHhcc-CchHHHHHHHHHHHhh
Q 007343 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLE---DRLQH-ANGAVVLSTIKVFLHL 288 (607)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~---~~L~~-~n~aVv~~ai~~i~~l 288 (607)
.|.. .-+..|++..-....-.-.+++|-++.. ++.....+.+.+. ..+.+ .+...+.||+-++-.+
T Consensus 449 m~~g-------~gL~~L~~ra~~~~D~lLlKlIRNiS~h---~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 449 MCEG-------NGLQSLMKRALKTRDPLLLKLIRNISQH---DGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANL 518 (708)
T ss_pred HHhc-------CcHHHHHHHHHhcccHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhc
Confidence 2211 1233444332122222333444444443 3223333344443 33444 4678899999998888
Q ss_pred cCCcchhHHHHHH--HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHcc
Q 007343 289 TLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVA 366 (607)
Q Consensus 289 ~~~~~~~~~~~~~--~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~ 366 (607)
+.+..+.. ++++ .+.+.|..+|..+..+ --+.|+.+..+.... .||. . -..++
T Consensus 519 ~~~~ld~~-~ll~~~~llp~L~~~L~~g~~~-dDl~LE~Vi~~gtla---------------~d~~-~-------A~lL~ 573 (708)
T PF05804_consen 519 TIPDLDWA-QLLQEYNLLPWLKDLLKPGASE-DDLLLEVVILLGTLA---------------SDPE-C-------APLLA 573 (708)
T ss_pred ccCCcCHH-HHHHhCCHHHHHHHHhCCCCCC-hHHHHHHHHHHHHHH---------------CCHH-H-------HHHHH
Confidence 75433322 2222 2444455555432111 124444433222111 1111 0 00011
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh------HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhC
Q 007343 367 NESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY 440 (607)
Q Consensus 367 n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~------~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~ 440 (607)
++.+...+-+|+.- ...|.+|+-.++....++...-+.. +..+..+++++...+. ....+....-+|+..+
T Consensus 574 -~sgli~~Li~LL~~-kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~-~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 574 -KSGLIPTLIELLNA-KQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNA-EIRKVCDNALDIIAEY 650 (708)
T ss_pred -hCChHHHHHHHHHh-hCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCH-HHHHHHHHHHHHHHHh
Confidence 12333333333322 2347788888877777765432211 2356777888877654 3344455555565554
Q ss_pred C
Q 007343 441 P 441 (607)
Q Consensus 441 p 441 (607)
.
T Consensus 651 d 651 (708)
T PF05804_consen 651 D 651 (708)
T ss_pred C
Confidence 4
No 86
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.06 E-value=0.95 Score=49.03 Aligned_cols=329 Identities=13% Similarity=0.132 Sum_probs=172.1
Q ss_pred chHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhh--cchHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 007343 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREAL--ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (607)
Q Consensus 175 ~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~l--i~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~ 252 (607)
+...+..+|...++..++...+.++.++...+|.. +.-+... .++..+..+++.+...+.+.+.+...+|+.+.
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~----~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~ 129 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTR----VKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLA 129 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHH----HHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 44444455444566777777888888887765531 1100000 00112344444444556778877777777653
Q ss_pred ---CCCh--hHHHHHHHHHHHHhccC-chHHHHHHHHHHHhhcCCcchhHHHHH-HHHHHHHHHHhcc--CCchhHHHHH
Q 007343 253 ---PLDS--NEIFDIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSS--GSPEQSYAVL 323 (607)
Q Consensus 253 ---~~~~--~~~~~il~~l~~~L~~~-n~aVv~~ai~~i~~l~~~~~~~~~~~~-~~l~~~L~~ll~s--~~~ni~y~~L 323 (607)
+.+. .+...+.+.+...+++. ++.-+.-|++++-.+... +..+.... .+..++|..+|+. .+..++|-++
T Consensus 130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHH
Confidence 3221 12233556667777654 344555555665444322 22221111 1234556666653 2457788887
Q ss_pred HHHHHHHhhCCccccc--cccee--e---eccCCCHhHHHHHHHHHHHccCCC--------CHHHHHH-HHHHHhh----
Q 007343 324 SHLHILVMRAPFIFAS--DYKHF--Y---CQYNEPSYVKKLKLEMLTAVANES--------NTYEIVT-ELCEYAA---- 383 (607)
Q Consensus 324 ~~i~~l~~~~p~~~~~--~~~~f--~---~~~~d~~~Ik~~kL~iL~~l~n~~--------N~~~Iv~-eL~~y~~---- 383 (607)
-.+=.+. -.|+.... +...+ + ++..--+-|-|..+.+|..+.+.. ....+|. .+...+.
T Consensus 209 l~lWlLS-F~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~ 287 (429)
T cd00256 209 FCIWLLT-FNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQ 287 (429)
T ss_pred HHHHHHh-ccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhc
Confidence 7665443 22221111 11100 0 112222446677788888887743 1122332 2322222
Q ss_pred --cCCHHHHHHHHHHHHHHHcccCC---hHHH-HHHHHHhhhhcCchhhHHHHHH-HHHHHHhCCCCchhHHHHHHhhhh
Q 007343 384 --NVDIPIARESIRAVGKIALQQYD---VNAI-VDRLLQFLEMEKDYVTAEALVL-VKDLLRKYPQWSHDCIAVVGSISS 456 (607)
Q Consensus 384 --~~d~~~~~~~i~~I~~la~k~~~---~~~~-v~~ll~ll~~~~~~v~~e~i~~-i~~i~~~~p~~~~~~~~~l~~l~~ 456 (607)
=.|+++..++-.--..+.+++.+ ...| -+.....|+=+..|-++..|.- ...+-.+ .-..+..+.+++
T Consensus 288 rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~----~~~llk~L~~iL- 362 (429)
T cd00256 288 RKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEK----NYELLKILIHLL- 362 (429)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhc----chHHHHHHHHHH-
Confidence 25777776654444444444322 2223 3333444444444555555531 2222111 112344555655
Q ss_pred ccCCchHHHHHHHHHHhcccCCCCChHHHHHHH------HHhhhcCCcHHHHHHHHHHHHHHhhc
Q 007343 457 QNVQEPKAKAALIWMLGEYSQDMQDAPYILESL------TENWEEEPSAEVRLHLLTAVMKCFFK 515 (607)
Q Consensus 457 ~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~~l------~~~f~~e~~~~vk~~iLta~~Kl~~~ 515 (607)
+.-++|...+.++.=+|||..+.|+...+++.+ .+-...++ ++||.+.|.|+-|+..+
T Consensus 363 ~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d-~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 363 ETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED-PNVRYEALLAVQKLMVH 426 (429)
T ss_pred hcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHHh
Confidence 333688889999999999999999887777653 22233344 99999999999999764
No 87
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=7.4 Score=47.66 Aligned_cols=411 Identities=15% Similarity=0.137 Sum_probs=217.0
Q ss_pred hhccCCCchhHHHHHHHH---HhhccCCChHHHHH---HHHHHHHcCCCCHHHHHHHHHHhhcC---ChH----hhHHHH
Q 007343 70 MCSATSDIVLKKMCYLYV---GNYAKVNPDLALLT---INFLQRDCKDEDPMIRGLALRSLCSL---RVA----NLVEYL 136 (607)
Q Consensus 70 ~l~~s~~~~~Krl~YL~l---~~~~~~~~el~~L~---iNtl~kDl~~~n~~ir~lALr~l~~i---~~~----e~~~~l 136 (607)
..+.|++.+.|+.+.+-+ .+|....|+..++. --.|..-|.|.|++++-.|-|-||=+ ++. ++++.+
T Consensus 825 ~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~~LV~sL 904 (1702)
T KOG0915|consen 825 TLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKKSLVDSL 904 (1702)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHHHHHHHH
Confidence 466789999999887644 55566667653321 14666778899999999999988754 333 333333
Q ss_pred HHHH-----------------------------------------------------hhhcCCC-ChHHHHHHHHHHHHH
Q 007343 137 VGPL-----------------------------------------------------GLGLKDN-NSYVRTVAVIGVLKL 162 (607)
Q Consensus 137 ~~~i-----------------------------------------------------~~~L~d~-~~~VRK~A~lal~kl 162 (607)
+..+ +++-+|. ...=||=||.++..+
T Consensus 905 ~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i 984 (1702)
T KOG0915|consen 905 VNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAI 984 (1702)
T ss_pred HHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHH
Confidence 3322 1112222 245678899999998
Q ss_pred HhhCCCCcCC--CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhH
Q 007343 163 YHISAPTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWA 240 (607)
Q Consensus 163 ~~~~p~~~~~--~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~ 240 (607)
.....+..+. ..++|+|++- ..|+|+.|..+.......+..... ...+ ..-..++..|+.++ .+.+|-
T Consensus 985 ~~~a~~kl~p~l~kLIPrLyRY-~yDP~~~Vq~aM~sIW~~Li~D~k-----~~vd---~y~neIl~eLL~~l-t~kewR 1054 (1702)
T KOG0915|consen 985 AKQAGEKLEPYLKKLIPRLYRY-QYDPDKKVQDAMTSIWNALITDSK-----KVVD---EYLNEILDELLVNL-TSKEWR 1054 (1702)
T ss_pred HHHHHHhhhhHHHHhhHHHhhh-ccCCcHHHHHHHHHHHHHhccChH-----HHHH---HHHHHHHHHHHHhc-cchhHH
Confidence 8776555421 3567888887 789999999886666665544321 1111 11123455555544 467884
Q ss_pred H-----HHHHHHHhccCCCChhHHHHHHHHHHHHhccC---chHHHHHH-------HHHHHhhcCC-cchhHHHHHHHHH
Q 007343 241 Q-----CLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA---NGAVVLST-------IKVFLHLTLS-MTDVHQQVYERIK 304 (607)
Q Consensus 241 q-----i~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~---n~aVv~~a-------i~~i~~l~~~-~~~~~~~~~~~l~ 304 (607)
- ..+.++|+. +..++...++-+.....++-. -.+|.-+| .|+.+.+... ...-.++++.-+-
T Consensus 1055 VReasclAL~dLl~g--~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1055 VREASCLALADLLQG--RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence 3 344555554 222333333333333333211 12222211 2222222221 1111244554444
Q ss_pred HHHH--HHhccCCchhHHHHHHHHHHHHhhCCccccccccee-eeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007343 305 APLL--TLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEY 381 (607)
Q Consensus 305 ~~L~--~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f-~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y 381 (607)
+.|. ..+ ++-+++|-..+..+..++...|..+.+|...+ .|..+ . -..+=..+ +.|
T Consensus 1133 PfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~---------------~-~s~lE~~v----LnY 1191 (1702)
T KOG0915|consen 1133 PFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLN---------------A-YSELEPQV----LNY 1191 (1702)
T ss_pred HHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHH---------------H-ccccchHH----HHH
Confidence 3332 123 57789999999999999999999888876432 11110 0 01111111 123
Q ss_pred hhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCch--hHHHHHHhhhhccC
Q 007343 382 AANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH--DCIAVVGSISSQNV 459 (607)
Q Consensus 382 ~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~--~~~~~l~~l~~~~~ 459 (607)
+.-.-.....+++.....=+.|-. ...+++-.++..-...+-.|.+-.+.+++|..-.+-. .|...+..+
T Consensus 1192 ls~r~~~~e~ealDt~R~s~akss---pmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L----- 1263 (1702)
T KOG0915|consen 1192 LSLRLINIETEALDTLRASAAKSS---PMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLL----- 1263 (1702)
T ss_pred HHHhhhhhHHHHHHHHHHhhhcCC---cHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHH-----
Confidence 221112233344444333222221 2344555555554455666766777777776544322 121122221
Q ss_pred CchHHHHHHHHHHhcccCCC-CChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHhhcC
Q 007343 460 QEPKAKAALIWMLGEYSQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR-PPETQKVLGAALAAGLAD 534 (607)
Q Consensus 460 ~~~~~~~~~iwilGEy~~~i-~~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~-p~~~~~~~~~~l~~~~~d 534 (607)
.-.||... |-...+++.+.-.+.+-. +.+|-+.=.|..+++--. |+++++++..++.....+
T Consensus 1264 ------------~~r~~~emtP~sgKll~al~~g~~dRN-esv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k 1327 (1702)
T KOG0915|consen 1264 ------------VQRLGSEMTPYSGKLLRALFPGAKDRN-ESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGK 1327 (1702)
T ss_pred ------------HHHhccccCcchhHHHHHHhhcccccc-HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcc
Confidence 11233333 234566777777776666 777777777777776432 446677777766665543
No 88
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.65 E-value=6 Score=45.99 Aligned_cols=455 Identities=14% Similarity=0.109 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHH-HHHHHhhccCCCh-HHHHHHHHHHHHcCCCCHHHHHHHHH
Q 007343 45 RELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMC-YLYVGNYAKVNPD-LALLTINFLQRDCKDEDPMIRGLALR 122 (607)
Q Consensus 45 ~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~-YL~l~~~~~~~~e-l~~L~iNtl~kDl~~~n~~ir~lALr 122 (607)
.+.+.+++..+..-.....+-+.+-++....-+.-|--+ =++...|....++ +-.=.-+.++.-++|.+|.+|..+-+
T Consensus 180 ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~ 259 (759)
T KOG0211|consen 180 VESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVAS 259 (759)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 344444444443322333333333344433233323222 3444445444423 32344567778889999999999988
Q ss_pred HhhcCCh----HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC-cCCCCchHHHHHhhcCCCChhHHHHHHH
Q 007343 123 SLCSLRV----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT-CIDADFPPTLKHLMLNDPDPQVVANCLS 197 (607)
Q Consensus 123 ~l~~i~~----~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~-~~~~~~~~~L~~lLl~D~d~~V~~~a~~ 197 (607)
-++.+.. ......+.+....+..|....||=.|.-++..+.....+. =....+.+.+.+. .+|.+-.|......
T Consensus 260 ~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~-~~d~~~~v~~~~~~ 338 (759)
T KOG0211|consen 260 NLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQA-VEDGSWRVSYMVAD 338 (759)
T ss_pred hhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH-hcChhHHHHHHHhh
Confidence 8888743 3445556666777888888999999888888887654332 1123566777776 47888777776665
Q ss_pred HHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHH----HHHHHHHhccCCC---ChhHHHHHHHHHHHHh
Q 007343 198 ALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQ----CLVLELVAKYVPL---DSNEIFDIMNLLEDRL 270 (607)
Q Consensus 198 ~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~q----i~iL~lL~~~~~~---~~~~~~~il~~l~~~L 270 (607)
...++...=+. + .....+. + .+..++ ...+|-- ..-.+-+..|.+. ..--...++..+....
T Consensus 339 ~~~~L~~~~~~---~--~~~~~~~-~-~~~~l~----~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv 407 (759)
T KOG0211|consen 339 KFSELSSAVGP---S--ATRTQLV-P-PVSNLL----KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLV 407 (759)
T ss_pred hhhhHHHHhcc---c--cCcccch-h-hHHHHh----cchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHH
Confidence 55555432110 0 0000111 1 122222 2233321 2222223333221 1011123456666666
Q ss_pred ccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc-----ccccccceee
Q 007343 271 QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-----IFASDYKHFY 345 (607)
Q Consensus 271 ~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~-----~~~~~~~~f~ 345 (607)
..+|..|.-+.+..+..+.+-.+ +...+.-+.+++...+++..+.++--....+..+....+. +-+.++...-
T Consensus 408 ~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~ 485 (759)
T KOG0211|consen 408 LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIV 485 (759)
T ss_pred hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhh
Confidence 66777676666665555543222 1111222334445566666666666555444333322211 0111222222
Q ss_pred eccCCC-HhHHHHHHHHHHHccCCCCHHHHHHHHH----HHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHH-Hhhh
Q 007343 346 CQYNEP-SYVKKLKLEMLTAVANESNTYEIVTELC----EYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLL-QFLE 419 (607)
Q Consensus 346 ~~~~d~-~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~----~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll-~ll~ 419 (607)
+...|. .-+|..-++-+-.++.+.=..-.-+++. .|+.+...++++.+.+.+..++++|. .+|+..+++ +++.
T Consensus 486 el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~~~i~k~L~ 564 (759)
T KOG0211|consen 486 ELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARLEEIPKLLA 564 (759)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHHHhhHHHHH
Confidence 222221 3344444554444444433222222222 34444455666666666666666665 445433322 2222
Q ss_pred hcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCC---hHHHHHHHHHhhhcC
Q 007343 420 MEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEE 496 (607)
Q Consensus 420 ~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~---~~~~l~~l~~~f~~e 496 (607)
..++. . -..|.+++.-+-+....... ..+++-.+.+ +...
T Consensus 565 ~~~q~-----------------~-------------------y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~-l~~D 607 (759)
T KOG0211|consen 565 MDLQD-----------------N-------------------YLVRMTTLFSIHELAEVLGQEITCEDLLPVFLD-LVKD 607 (759)
T ss_pred HhcCc-----------------c-------------------cchhhHHHHHHHHHHHHhccHHHHHHHhHHHHH-hccC
Confidence 22220 0 00111111111111111111 1223333333 3333
Q ss_pred CcHHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHhhcCCChhHHhHHHHHHHHcc
Q 007343 497 PSAEVRLHLLTAVMKCFFKR-PPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQ 551 (607)
Q Consensus 497 ~~~~vk~~iLta~~Kl~~~~-p~~~~~~~~~~l~~~~~d~~~dvrdRA~~y~~Ll~ 551 (607)
+.++||.-..-.+-|+.-.- ++..+..+..++.....|.|.|+|=||..-.+.+.
T Consensus 608 ~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 608 PVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred CchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 33778877665555543221 23455667777777777888888888876554443
No 89
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.63 E-value=0.29 Score=52.38 Aligned_cols=168 Identities=18% Similarity=0.243 Sum_probs=109.0
Q ss_pred CCCCCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcch--hhhhh----hhhccC-CCchhH
Q 007343 8 HRSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSA--VFGEM----VMCSAT-SDIVLK 80 (607)
Q Consensus 8 ~~~~~~~~~~~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~--lf~~v----i~l~~s-~~~~~K 80 (607)
|++|-.+++..-..++-+++.|++..+. ...+.+++++..++.++.-|----| .|.++ ++.++. .+...|
T Consensus 271 ~~~~~~~~p~~~~~~~~v~~~l~~~~g~---e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k 347 (516)
T KOG2956|consen 271 DDSMDQLTPNSVDQSALVADLLKEISGS---ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIK 347 (516)
T ss_pred CcchhhCCCCCcchhHHHHHHHHhccCc---cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHH
Confidence 4444444444445566677777765432 2346799999999999998865444 47765 355554 889999
Q ss_pred HHHHHHHHhhccCCChH----HHHHHHHHHHHcCCCCHHHHHHH----HHHhhc--------------------------
Q 007343 81 KMCYLYVGNYAKVNPDL----ALLTINFLQRDCKDEDPMIRGLA----LRSLCS-------------------------- 126 (607)
Q Consensus 81 rl~YL~l~~~~~~~~el----~~L~iNtl~kDl~~~n~~ir~lA----Lr~l~~-------------------------- 126 (607)
+++.=-+.-....+|.- +-++|-.+..--.|+++-+.+.| ++++++
T Consensus 348 ~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~i 427 (516)
T KOG2956|consen 348 KLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVI 427 (516)
T ss_pred HHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHH
Confidence 99998888887776643 45667666666666655444333 223332
Q ss_pred -----C----ChH---hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHh
Q 007343 127 -----L----RVA---NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (607)
Q Consensus 127 -----i----~~~---e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~l 182 (607)
+ ..+ .+++.+.|.+.++..+.+..|||+|+.|+..++..-.. .++-++|..+
T Consensus 428 Km~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~----~~mePhL~~L 491 (516)
T KOG2956|consen 428 KMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM----EEMEPHLEQL 491 (516)
T ss_pred HHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH----HhhhhHhhhc
Confidence 2 122 23566777788888888889999999999888875431 2455666663
No 90
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=95.42 E-value=0.098 Score=51.94 Aligned_cols=93 Identities=23% Similarity=0.211 Sum_probs=76.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHH
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L 179 (607)
=+||.|-..+.+++.++|--+-.++|.+..|.-++.+...+.. .-.+|+||--|+-|+..+. +++-++.|
T Consensus 187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d--~~E~pMVRhEaAeALGaIa--------~e~~~~vL 256 (289)
T KOG0567|consen 187 EAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD--ETEHPMVRHEAAEALGAIA--------DEDCVEVL 256 (289)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh--hhcchHHHHHHHHHHHhhc--------CHHHHHHH
Confidence 4789999999999999999999999999999877766644443 2358999999999999885 24567889
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHH
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
++. ++|.++.|.-+|..+|..+.
T Consensus 257 ~e~-~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 257 KEY-LGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHH-cCCcHHHHHHHHHHHHHHHH
Confidence 998 59999999888888886554
No 91
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.25 Score=55.11 Aligned_cols=139 Identities=21% Similarity=0.214 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChHhh--------HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCC
Q 007343 99 LLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANL--------VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA 167 (607)
Q Consensus 99 ~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~e~--------~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p 167 (607)
.|.-..+-+.|+-+|..||+.|+..+-+. ++|+. ++--...+.++|.|+-|.||..|+.++.|++..+=
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW 252 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFW 252 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence 36667888999999999999999887764 44433 44455667889999999999999999999876553
Q ss_pred CCcCC---CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc----CCCChhH
Q 007343 168 PTCID---ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI----KEFSEWA 240 (607)
Q Consensus 168 ~~~~~---~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l----~~~~~w~ 240 (607)
+.++. .+....+.+=+..|+...|+.+.+.-|.++... | ...+++..++.++ .+.++-.
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p-------------~sh~~le~~Lpal~~~l~D~se~V 318 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-P-------------LSHPLLEQLLPALRYSLHDNSEKV 318 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-c-------------cchhHHHHHHHhcchhhhccchhH
Confidence 33321 123333333335678889999988888888753 2 1123455555544 3566666
Q ss_pred HHHHHHHHhcc
Q 007343 241 QCLVLELVAKY 251 (607)
Q Consensus 241 qi~iL~lL~~~ 251 (607)
.+...++|.+.
T Consensus 319 RvA~vd~ll~i 329 (1005)
T KOG1949|consen 319 RVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 92
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=4.5 Score=48.23 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhH-HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC
Q 007343 255 DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (607)
Q Consensus 255 ~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~-~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~ 333 (607)
+.+....+++.+.-.|.+.++.|+-+|+..+--+....+... ..-++.+-+.+..++.+...++|--+...+..++.++
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 344556788888889999999999999988765554545422 1222334444455555445555555555555555543
No 93
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=95.37 E-value=0.14 Score=58.24 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHH
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~ 180 (607)
..+.+.+..+..+...+-++|++|||++.+..+..+.+.+. +-...++++|..|+.|+-++-..+|+.+ .+.+.
T Consensus 447 l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v-----~~~l~ 520 (574)
T smart00638 447 LHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKV-----QEVLL 520 (574)
T ss_pred HHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHH-----HHHHH
Confidence 34444555566788889999999999999999999888876 3345678999999999999988888865 33444
Q ss_pred Hhh-cCCCChhHHHHHHHHHHHH
Q 007343 181 HLM-LNDPDPQVVANCLSALQEI 202 (607)
Q Consensus 181 ~lL-l~D~d~~V~~~a~~~L~ei 202 (607)
... ..+.++.|+.+|+.+|...
T Consensus 521 ~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 521 PIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHcCCCCChHHHHHHHHHHHhc
Confidence 442 3457899999999888875
No 94
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=7.4 Score=44.01 Aligned_cols=338 Identities=16% Similarity=0.217 Sum_probs=179.1
Q ss_pred hhHHHHHHHHHhhccCCChHH-HHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHH
Q 007343 78 VLKKMCYLYVGNYAKVNPDLA-LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAV 156 (607)
Q Consensus 78 ~~Krl~YL~l~~~~~~~~el~-~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~ 156 (607)
.+=||.|+|+.-| +=|.- +-++|-+. .-.=+.-.|=-+++..+-+ ...++...+...|++=|.+.+|.----|+
T Consensus 58 YV~KLlyI~llg~---dIdFGhmEaV~LLs-s~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL 132 (938)
T KOG1077|consen 58 YVCKLLYIYLLGY---DIDFGHMEAVNLLS-SNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLAL 132 (938)
T ss_pred HHHHHHHHHHhcC---ccccchHHHHHHhh-cCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHH
Confidence 3447888888764 22332 23444432 1122233444466666665 34678888899999988888888888899
Q ss_pred HHHHHHHhhCCCCcCCCCchHHHHHhhc-CCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcch-HHHHHHHhhcC
Q 007343 157 IGVLKLYHISAPTCIDADFPPTLKHLML-NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK-PVIYYLLNRIK 234 (607)
Q Consensus 157 lal~kl~~~~p~~~~~~~~~~~L~~lLl-~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~-~~~~~Ll~~l~ 234 (607)
.|++.+... +.. +.+-+.+.++|. .+.-..|...|...|..+.+..|+. +.+ .-+.+++..|.
T Consensus 133 ~~I~niG~r--e~~--ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl-----------~~~~~W~~riv~LL~ 197 (938)
T KOG1077|consen 133 HCIANIGSR--EMA--EAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL-----------VNPGEWAQRIVHLLD 197 (938)
T ss_pred HHHHhhccH--hHH--HHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc-----------cChhhHHHHHHHHhC
Confidence 999888643 221 234445555542 3445567666666666777776652 111 12334444443
Q ss_pred CCC---hhHHHHHHHHHhccCCCChhHH-HHHHHHHHHHh-------c------cCchHHHHHHHHHHHhhcCCcchhHH
Q 007343 235 EFS---EWAQCLVLELVAKYVPLDSNEI-FDIMNLLEDRL-------Q------HANGAVVLSTIKVFLHLTLSMTDVHQ 297 (607)
Q Consensus 235 ~~~---~w~qi~iL~lL~~~~~~~~~~~-~~il~~l~~~L-------~------~~n~aVv~~ai~~i~~l~~~~~~~~~ 297 (607)
+.+ --.-.-++.+|.++.|.+-... ...+..+.... + -.+|=.....++++-.+... +|-.
T Consensus 198 D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~-~D~~- 275 (938)
T KOG1077|consen 198 DQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTP-EDPS- 275 (938)
T ss_pred ccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCC-CCch-
Confidence 322 1123556677766655421110 00011111110 0 01232333444544444322 2210
Q ss_pred HHHHHHHHHHHHHhccCC----------chhHHHHH-HHHHHHHhhC--Ccccccccc---eeeeccCCCHhHHHHHHHH
Q 007343 298 QVYERIKAPLLTLVSSGS----------PEQSYAVL-SHLHILVMRA--PFIFASDYK---HFYCQYNEPSYVKKLKLEM 361 (607)
Q Consensus 298 ~~~~~l~~~L~~ll~s~~----------~ni~y~~L-~~i~~l~~~~--p~~~~~~~~---~f~~~~~d~~~Ik~~kL~i 361 (607)
...++...|-++|+... .|.+-.+| ++|..+.... |++...-+. .|. .+..+-||.++||-
T Consensus 276 -~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl--s~rE~NiRYLaLEs 352 (938)
T KOG1077|consen 276 -TRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL--SHRETNIRYLALES 352 (938)
T ss_pred -HHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh--hcccccchhhhHHH
Confidence 11122223333333111 12232222 3333333222 233333222 221 22234599999999
Q ss_pred HHHccCCCCHHHHHHHHHH----Hhh-cCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHHHHH
Q 007343 362 LTAVANESNTYEIVTELCE----YAA-NVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDL 436 (607)
Q Consensus 362 L~~l~n~~N~~~Iv~eL~~----y~~-~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i 436 (607)
+..||+.+-..+.|+.=++ -+. +.|.+++++++.-+--.+.. .++..+|+-|++.|..+...+.+|.+.-+.-+
T Consensus 353 m~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~IV~elLqYL~tAd~sireeivlKvAIL 431 (938)
T KOG1077|consen 353 MCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQIVAELLQYLETADYSIREEIVLKVAIL 431 (938)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 9999999888888765433 233 56889999888776444322 23456999999999998766777776666666
Q ss_pred HHhCC
Q 007343 437 LRKYP 441 (607)
Q Consensus 437 ~~~~p 441 (607)
..+|.
T Consensus 432 aEKyA 436 (938)
T KOG1077|consen 432 AEKYA 436 (938)
T ss_pred HHHhc
Confidence 67764
No 95
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.13 E-value=0.05 Score=45.83 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=55.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcCC-----hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 102 INFLQRDCKDEDPMIRGLALRSLCSLR-----VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 102 iNtl~kDl~~~n~~ir~lALr~l~~i~-----~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
-+...++++||.+-+|+-||..|+++- ...-.+.+..-....+.|+++||==.|+-|+..+...+|+.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 356778899999999999999998872 223356667777788899999999999999999988888754
No 96
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.04 E-value=0.85 Score=47.22 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=95.6
Q ss_pred HHHHHHHH-HHhhcCCHHHHHHHHHHHHHHHcccCC-hHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHH
Q 007343 372 YEIVTELC-EYAANVDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIA 449 (607)
Q Consensus 372 ~~Iv~eL~-~y~~~~d~~~~~~~i~~I~~la~k~~~-~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~ 449 (607)
..+++.|. -.+++.|..+++.+++.+|.++.-..+ +..++..+...+..+.+.+...++.++.|++..|+...
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~----- 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI----- 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh-----
Confidence 37787777 566778999999999999999976655 35688888888877667777788888889888776321
Q ss_pred HHHhhhhccCCchHHHHHHHHHHhcccCCCCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchh-HHHHHHHH
Q 007343 450 VVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPET-QKVLGAAL 528 (607)
Q Consensus 450 ~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~-~~~~~~~l 528 (607)
+... ..+. .-.....+++.+.+.+..+. +++|......++|++...--.. ..++..++
T Consensus 100 -~~~~-----~~~~--------------~~~~~~~l~~~l~~~l~~~~-~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Ll 158 (298)
T PF12719_consen 100 -FDSE-----SDND--------------ESVDSKSLLKILTKFLDSEN-PELQAIAVEGLCKLLLSGRISDPPKVLSRLL 158 (298)
T ss_pred -ccch-----hccC--------------ccchHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 1111 0111 11224556666666666666 8899999999999988653222 34555544
Q ss_pred HHhh-cC--CChhHHhH
Q 007343 529 AAGL-AD--FHQDVHDR 542 (607)
Q Consensus 529 ~~~~-~d--~~~dvrdR 542 (607)
-.+- .. .++.+||=
T Consensus 159 l~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 159 LLYFNPSTEDNQRLRQC 175 (298)
T ss_pred HHHcCcccCCcHHHHHH
Confidence 4332 22 35666663
No 97
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.42 Score=53.71 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=87.6
Q ss_pred HHHHHhcCCCcchhhhhhhhhcc-CCCchhHHHH--HHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhc-
Q 007343 51 VISYMTIGIDVSAVFGEMVMCSA-TSDIVLKKMC--YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS- 126 (607)
Q Consensus 51 li~~~~~G~d~s~lf~~vi~l~~-s~~~~~Krl~--YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~- 126 (607)
-+.+.|+|.--...+-++....+ ++--.++|=. =+++..|..+ |. +=+-+.+-+.|.||+.|.-..-+++.
T Consensus 472 ~MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq--e~---Ad~lI~el~~dkdpilR~~Gm~t~alA 546 (929)
T KOG2062|consen 472 AMGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ--ED---ADPLIKELLRDKDPILRYGGMYTLALA 546 (929)
T ss_pred hhhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh--hh---hHHHHHHHhcCCchhhhhhhHHHHHHH
Confidence 34466777766666777766544 3333334432 3455566543 33 33444555567799999755444432
Q ss_pred -C--ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 127 -L--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 127 -i--~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
. +....+..+. .=..+|.|..|||+|++|+.-+.-.+|+.+ +...++|...-||.|+..|..+|.-.|
T Consensus 547 y~GTgnnkair~lL---h~aVsD~nDDVrRaAVialGFVl~~dp~~~------~s~V~lLses~N~HVRyGaA~ALGIaC 617 (929)
T KOG2062|consen 547 YVGTGNNKAIRRLL---HVAVSDVNDDVRRAAVIALGFVLFRDPEQL------PSTVSLLSESYNPHVRYGAAMALGIAC 617 (929)
T ss_pred HhccCchhhHHHhh---cccccccchHHHHHHHHHheeeEecChhhc------hHHHHHHhhhcChhhhhhHHHHHhhhh
Confidence 1 2223333222 224689999999999999999988888876 344455444569999999999998766
Q ss_pred hh
Q 007343 204 SL 205 (607)
Q Consensus 204 ~~ 205 (607)
.-
T Consensus 618 AG 619 (929)
T KOG2062|consen 618 AG 619 (929)
T ss_pred cC
Confidence 53
No 98
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=94.94 E-value=0.0072 Score=45.48 Aligned_cols=53 Identities=25% Similarity=0.208 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHhhCCCCcC--CCCchHHHHHhhcCCCChhHHHHHHHHHHHH
Q 007343 149 SYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (607)
Q Consensus 149 ~~VRK~A~lal~kl~~~~p~~~~--~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei 202 (607)
|.||..|+.++..+....|+... .++.++.|..+| .|+++.|+.+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L-~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLL-QDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHT-TSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHhcC
Confidence 67999999999976655544431 135677788874 888999999999988653
No 99
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=6.7 Score=47.98 Aligned_cols=353 Identities=14% Similarity=0.118 Sum_probs=189.0
Q ss_pred HHHHHHHHHHHHhcC-C-Ccchhhhhhh----hhccCCCchhHHHHHHHHHhhccCCChH-----HHHHHHHHHHHcCCC
Q 007343 44 KRELFKKVISYMTIG-I-DVSAVFGEMV----MCSATSDIVLKKMCYLYVGNYAKVNPDL-----ALLTINFLQRDCKDE 112 (607)
Q Consensus 44 k~~~l~kli~~~~~G-~-d~s~lf~~vi----~l~~s~~~~~Krl~YL~l~~~~~~~~el-----~~L~iNtl~kDl~~~ 112 (607)
-..+|+-+--..... . -++.+|-++. ..+.++-...|--..+++..+.+..|-. +.=.=-++.+-+-|-
T Consensus 1014 Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI 1093 (1702)
T KOG0915|consen 1014 VQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI 1093 (1702)
T ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345665555444443 2 2566677774 4678899999999999999999876532 000111222222333
Q ss_pred CHHHHH---HHHHHhhcC-----------ChHhhHHHHHHHHhh-hcCCCChHHHHHHHHHHHHHHhhCCCCcCC--CCc
Q 007343 113 DPMIRG---LALRSLCSL-----------RVANLVEYLVGPLGL-GLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADF 175 (607)
Q Consensus 113 n~~ir~---lALr~l~~i-----------~~~e~~~~l~~~i~~-~L~d~~~~VRK~A~lal~kl~~~~p~~~~~--~~~ 175 (607)
-+-+|- .|.++++++ ...+++..+.|.+.. +.-++-+.|||.++-.+.++-+.+|..+.. +++
T Consensus 1094 KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~L 1173 (1702)
T KOG0915|consen 1094 KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKL 1173 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHH
Confidence 455665 457777775 235778888888765 556889999999999999999998877631 345
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHHh------------hccccc-hhhhhhHh-hhcchHHHHHHHhhcC-------
Q 007343 176 PPTLKHLMLNDPDPQVVANCLSALQEIWS------------LEASTS-EEASRERE-ALISKPVIYYLLNRIK------- 234 (607)
Q Consensus 176 ~~~L~~lLl~D~d~~V~~~a~~~L~ei~~------------~~~~~~-~~~~~~~~-~li~~~~~~~Ll~~l~------- 234 (607)
++.|.+. .+.-.|.|+.-...=+.++.. ..|-.. -..|.+.. .-.-.+++.++++.+.
T Consensus 1174 Ip~ll~~-~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~T 1252 (1702)
T KOG0915|consen 1174 IPLLLNA-YSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGT 1252 (1702)
T ss_pred HHHHHHH-ccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCc
Confidence 5555555 255556665432221222221 111000 00111000 0000122333333221
Q ss_pred --CCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcch-hHHHHHHHHHHHHHHHh
Q 007343 235 --EFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLV 311 (607)
Q Consensus 235 --~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~-~~~~~~~~l~~~L~~ll 311 (607)
.++-+......|+.....|- .-+++.++.+.++..|++|....+....++.....+ -.+..++.. +.-++
T Consensus 1253 kvg~A~fI~~L~~r~~~emtP~----sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~---l~~~l 1325 (1702)
T KOG0915|consen 1253 KVGCASFISLLVQRLGSEMTPY----SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETL---LADLL 1325 (1702)
T ss_pred chhHHHHHHHHHHHhccccCcc----hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHH---HHHHh
Confidence 23444444445544444443 336889999999999999999999998888764332 112222222 22334
Q ss_pred ccCCchhHHHHHHHHHHHHhhCCcccccccce-----eeeccCCCHhHHHHHHHHHHHccCC--CCHH----HHHHHHHH
Q 007343 312 SSGSPEQSYAVLSHLHILVMRAPFIFASDYKH-----FYCQYNEPSYVKKLKLEMLTAVANE--SNTY----EIVTELCE 380 (607)
Q Consensus 312 ~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~-----f~~~~~d~~~Ik~~kL~iL~~l~n~--~N~~----~Iv~eL~~ 380 (607)
...++ .+-++...+..|....++.+.+|... |+....+......+==|+...+..- ..+. +|+.-+.+
T Consensus 1326 ~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~ice 1404 (1702)
T KOG0915|consen 1326 GKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICE 1404 (1702)
T ss_pred ccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHH
Confidence 33333 23555555555777777788777663 3333333222333333444444322 2222 22222222
Q ss_pred HhhcCC-HHHHHHHHHHHHHHHcccC
Q 007343 381 YAANVD-IPIARESIRAVGKIALQQY 405 (607)
Q Consensus 381 y~~~~d-~~~~~~~i~~I~~la~k~~ 405 (607)
-..+.+ -.++..++++|..+|....
T Consensus 1405 ni~nn~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1405 NITNNESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred HhccchHHHHHHHHHHHHHHHccccc
Confidence 222222 2455567777777776544
No 100
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.81 E-value=0.16 Score=58.95 Aligned_cols=137 Identities=21% Similarity=0.179 Sum_probs=96.3
Q ss_pred hhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHH---------c---CCCCHHHHHHHHHHhhcCChH-
Q 007343 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRD---------C---KDEDPMIRGLALRSLCSLRVA- 130 (607)
Q Consensus 64 lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kD---------l---~~~n~~ir~lALr~l~~i~~~- 130 (607)
.||-|+|+++|+-.++|-+.-..|..++.-++.--. -|.|| + ..-++.-|++|.-.|+.|...
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~----dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf 588 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQA----DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNF 588 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHH----HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHccc
Confidence 599999999999999998755555544444443211 23344 1 222468899998888876321
Q ss_pred -----h-hHHHHHHHHhhhcCC-CChHHHHHHHHHHHHHHhhCCCCc---CCCCchHHHHHhhcCCCChhHHHHHHHHHH
Q 007343 131 -----N-LVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQ 200 (607)
Q Consensus 131 -----e-~~~~l~~~i~~~L~d-~~~~VRK~A~lal~kl~~~~p~~~---~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ 200 (607)
+ +-..++......++| +.|..|.-.++|+.+++..+++.- .+....+.|..+ +.|+-|.|+++|+.||.
T Consensus 589 ~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~-LsD~vpEVRaAAVFALg 667 (1387)
T KOG1517|consen 589 KLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL-LSDPVPEVRAAAVFALG 667 (1387)
T ss_pred chhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH-hcCccHHHHHHHHHHHH
Confidence 1 122334444455677 479999999999999999887642 234567888888 59999999999999999
Q ss_pred HHHhh
Q 007343 201 EIWSL 205 (607)
Q Consensus 201 ei~~~ 205 (607)
.....
T Consensus 668 tfl~~ 672 (1387)
T KOG1517|consen 668 TFLSN 672 (1387)
T ss_pred HHhcc
Confidence 88753
No 101
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.79 E-value=9.9 Score=43.60 Aligned_cols=161 Identities=17% Similarity=0.215 Sum_probs=86.9
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCC-CChhHHHHHHHHHHHHHhhcc--
Q 007343 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEA-- 207 (607)
Q Consensus 131 e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D-~d~~V~~~a~~~L~ei~~~~~-- 207 (607)
|.++-+...+. +..-+.=||.|+.|+-.+-+.|.+.|...++-+.+..+ -.| .|+..+..++-.+.-+..++.
T Consensus 22 ETI~kLcDRve---ssTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL-~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 22 ETIEKLCDRVE---SSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVL-QRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred hHHHHHHHHHh---hccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH-hhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 34444444443 33344559999999999999999888667777777665 567 588888888888877765542
Q ss_pred cc--chhhhhhHh------hhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHH-------HHHHHHhcc
Q 007343 208 ST--SEEASRERE------ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIM-------NLLEDRLQH 272 (607)
Q Consensus 208 ~~--~~~~~~~~~------~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il-------~~l~~~L~~ 272 (607)
.. ++...-+.. ..-.+..+.-++..+..++-......+++++.....-|.++.+++ ..+..+|..
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 00 001011110 111223445555666666655555555555544333333443322 122233333
Q ss_pred CchHHHHHHHHHHHhhcCCcchh
Q 007343 273 ANGAVVLSTIKVFLHLTLSMTDV 295 (607)
Q Consensus 273 ~n~aVv~~ai~~i~~l~~~~~~~ 295 (607)
+-.-|.=+++-.++.+....+.+
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~I 200 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSI 200 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchH
Confidence 32333334444555666555544
No 102
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=94.66 E-value=0.68 Score=51.55 Aligned_cols=144 Identities=17% Similarity=0.210 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHHhhcC--ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCCh
Q 007343 112 EDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP 189 (607)
Q Consensus 112 ~n~~ir~lALr~l~~i--~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~ 189 (607)
.++-..-||-..++.. .-|++.+..+..+..+..|.+.-||+.|+-++..+++-+|+.+ ....+.|.++| .-.|+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v--~kvaDvL~QlL-~tdd~ 110 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV--SKVADVLVQLL-QTDDP 110 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H--HHHHHHHHHHT-T---H
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH--hHHHHHHHHHH-hcccH
Confidence 3566677777777775 5688999999999999999999999999999999999989887 56888888885 66677
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC---CCChhHHHHHHHHHhcc-CC---C--C-hhHH
Q 007343 190 QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK---EFSEWAQCLVLELVAKY-VP---L--D-SNEI 259 (607)
Q Consensus 190 ~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~---~~~~w~qi~iL~lL~~~-~~---~--~-~~~~ 259 (607)
..+..+-.+|.++.+.+|. ..+.-|++.+. ..++-...++|++|... .+ . + .+|.
T Consensus 111 ~E~~~v~~sL~~ll~~d~k---------------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~ 175 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPK---------------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEM 175 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HH---------------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHH
T ss_pred HHHHHHHHHHHHHHhcCcH---------------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHH
Confidence 7777777788888876652 12333343332 45677788888888532 11 1 1 1333
Q ss_pred HH-HHHHHHHHhccC
Q 007343 260 FD-IMNLLEDRLQHA 273 (607)
Q Consensus 260 ~~-il~~l~~~L~~~ 273 (607)
+. +.+.+...|+..
T Consensus 176 e~~i~~~ikkvL~DV 190 (556)
T PF05918_consen 176 EEFIVDEIKKVLQDV 190 (556)
T ss_dssp HHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHhc
Confidence 33 446666666643
No 103
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.55 E-value=2.4 Score=40.46 Aligned_cols=127 Identities=24% Similarity=0.271 Sum_probs=74.7
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhh---cCCCChhHHHHHHHHHhccCC
Q 007343 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR---IKEFSEWAQCLVLELVAKYVP 253 (607)
Q Consensus 177 ~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~---l~~~~~w~qi~iL~lL~~~~~ 253 (607)
..|-.+++.|+++.|+.+|+.++..+.... ++.+..--+. -..+.++.
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs----------------k~~L~~Ae~~~~~~~sFtslS------------- 92 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGS----------------KPFLAQAEESKGPSGSFTSLS------------- 92 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHcc----------------HHHHHHHHhcCCCCCCcccHH-------------
Confidence 344455579999999999999999997642 1111111110 01222221
Q ss_pred CChhHHHHHH---HHHHHHhcc-CchHHHHHHHHHHHhhcCCcc--hhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 007343 254 LDSNEIFDIM---NLLEDRLQH-ANGAVVLSTIKVFLHLTLSMT--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (607)
Q Consensus 254 ~~~~~~~~il---~~l~~~L~~-~n~aVv~~ai~~i~~l~~~~~--~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~ 327 (607)
...+..++ ..+...|++ .++.++-++.|++-.+....+ .+...++.++...+..++.++|++++-.+|-.+.
T Consensus 93 --~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~ 170 (182)
T PF13251_consen 93 --STLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLG 170 (182)
T ss_pred --HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 11222222 233344454 456677666676554433222 2344566666677777888899999999999998
Q ss_pred HHHhhCC
Q 007343 328 ILVMRAP 334 (607)
Q Consensus 328 ~l~~~~p 334 (607)
.++...|
T Consensus 171 ~l~s~~~ 177 (182)
T PF13251_consen 171 ALLSVQP 177 (182)
T ss_pred HHHcCCC
Confidence 8876654
No 104
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=12 Score=44.89 Aligned_cols=270 Identities=13% Similarity=0.135 Sum_probs=147.3
Q ss_pred HHHhcCCCcchhhhhhhhhc-cCCCchhHHHHHHHH----HhhccCCChHHHHHHHHHHH-HcCCCCHHHHHHHHHHhhc
Q 007343 53 SYMTIGIDVSAVFGEMVMCS-ATSDIVLKKMCYLYV----GNYAKVNPDLALLTINFLQR-DCKDEDPMIRGLALRSLCS 126 (607)
Q Consensus 53 ~~~~~G~d~s~lf~~vi~l~-~s~~~~~Krl~YL~l----~~~~~~~~el~~L~iNtl~k-Dl~~~n~~ir~lALr~l~~ 126 (607)
|....+.|+...+.+-+... ++.|-..+.--++.+ .-.+...++-.+-..+++.. +.++.++-++.-|-|.|..
T Consensus 601 ~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~ 680 (1176)
T KOG1248|consen 601 YFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEE 680 (1176)
T ss_pred HhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHH
Confidence 45556778877777776544 344322222222211 22223344444444445554 4445588888888766655
Q ss_pred CC--------hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCC----CCcCCCCchHHHHHhhcCCCChhHHHH
Q 007343 127 LR--------VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA----PTCIDADFPPTLKHLMLNDPDPQVVAN 194 (607)
Q Consensus 127 i~--------~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p----~~~~~~~~~~~L~~lLl~D~d~~V~~~ 194 (607)
+. ....++.+...+....++...++|+.++-|+..+|+..| +.+ +..++.+.=. .+|-|..-..+
T Consensus 681 l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~EvIL~-~Ke~n~~aR~~ 757 (1176)
T KOG1248|consen 681 LSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPEVILS-LKEVNVKARRN 757 (1176)
T ss_pred HhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHh-cccccHHHHhh
Confidence 42 234466666667777778889999999999999999988 222 1222222222 26777777888
Q ss_pred HHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhcc--
Q 007343 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQH-- 272 (607)
Q Consensus 195 a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~-- 272 (607)
|...|.+|+... ..+.-..++ + +.-...++..+..-+-.
T Consensus 758 Af~lL~~i~~i~---------------------~~~d~g~e~----~--------------~~~lnefl~~Isagl~gd~ 798 (1176)
T KOG1248|consen 758 AFALLVFIGAIQ---------------------SSLDDGNEP----A--------------SAILNEFLSIISAGLVGDS 798 (1176)
T ss_pred HHHHHHHHHHHH---------------------hhhcccccc----h--------------HHHHHHHHHHHHhhhcccH
Confidence 888888876210 000000111 0 01112222333222211
Q ss_pred ---CchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc-cccccce----e
Q 007343 273 ---ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI-FASDYKH----F 344 (607)
Q Consensus 273 ---~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~-~~~~~~~----f 344 (607)
.++. +.+...++........ ...+.++...+..+|.++.++++-.|+..+..++...|.. +++|... .
T Consensus 799 ~~~~as~-Ivai~~il~e~~~~ld---~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sl 874 (1176)
T KOG1248|consen 799 TRVVASD-IVAITHILQEFKNILD---DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSL 874 (1176)
T ss_pred HHHHHHH-HHHHHHHHHHHhcccc---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHH
Confidence 1222 2222223333332222 2345566666777888999999999999999999999873 4555431 1
Q ss_pred eeccCC-CHhHHHHHHHHHHHccCC
Q 007343 345 YCQYNE-PSYVKKLKLEMLTAVANE 368 (607)
Q Consensus 345 ~~~~~d-~~~Ik~~kL~iL~~l~n~ 368 (607)
+-...| ..++|.+-..+|-.|+..
T Consensus 875 l~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 875 LALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 222233 455665555555555443
No 105
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.45 E-value=1.1 Score=52.17 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=135.3
Q ss_pred HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCC-CCcC-CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTCI-DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 130 ~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p-~~~~-~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
.++..-+.+.+...+.|+++-=|+.|+-.+.......+ +... ..+.+-.+.+..+.|.|..|+..|...|..|+..-+
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 45677777888889999999999999999999988666 2221 123344444444689999999999999999987644
Q ss_pred ccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHh
Q 007343 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLH 287 (607)
Q Consensus 208 ~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~ 287 (607)
.. +.. .....+..++..+.+--.-+.-.++..+-.+... .-..++.+.+...+.+.|+.+.-+|...+-.
T Consensus 328 ~~----~~~----~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r 397 (815)
T KOG1820|consen 328 PL----FRK----YAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEALKGKNPQIKGECLLLLDR 397 (815)
T ss_pred hh----hHH----HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 21 111 1122355566666665555665666666555442 2345688899999999999999888776654
Q ss_pred hcCCcc--hhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCC
Q 007343 288 LTLSMT--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (607)
Q Consensus 288 l~~~~~--~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p 334 (607)
...... ......++.+.+.++...++.+.++|-++++.+..+...+.
T Consensus 398 ~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 398 KLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 332211 12234456677778888889999999999999998887654
No 106
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.17 E-value=0.46 Score=45.66 Aligned_cols=155 Identities=16% Similarity=0.105 Sum_probs=95.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHH--HHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchH
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVE--YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~--~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~ 177 (607)
.-.+.+.+-+.+++..+|-.|++.+..+-...++. ..+|.+..+..|++++||+.|...+..++.++|+.+. ..+.+
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~-~~~~~ 86 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE-SRYSE 86 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 33456777888999999999999999874333322 2556777888999999999999999999999999874 34444
Q ss_pred HHHHh------hcCCCChhH---HHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCC----------CC-
Q 007343 178 TLKHL------MLNDPDPQV---VANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE----------FS- 237 (607)
Q Consensus 178 ~L~~l------Ll~D~d~~V---~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~----------~~- 237 (607)
-++.. +..|..... ..+.+..+.++...+.. .+ +.++..|++.+.. ..
T Consensus 87 gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~-------~R-----~~Fl~~l~k~f~~~~~~~~~~~~~~~ 154 (187)
T PF12830_consen 87 GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRK-------SR-----RKFLKSLLKQFDFDLTKLSSESSPSD 154 (187)
T ss_pred HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccH-------hH-----HHHHHHHHHHHHhhccccccccchhH
Confidence 33321 223333222 55556667777652211 11 1234444443321 11
Q ss_pred hhHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 007343 238 EWAQCLVLELVAKYVPLDSNEIFDIMNLLE 267 (607)
Q Consensus 238 ~w~qi~iL~lL~~~~~~~~~~~~~il~~l~ 267 (607)
-+....+.+-|+.+.-...+|...++..+.
T Consensus 155 l~~~~Fla~nLA~l~y~~~~E~l~vi~~i~ 184 (187)
T PF12830_consen 155 LDFLLFLAENLATLPYQTQDEVLYVIHHID 184 (187)
T ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 234466666666665555566665555544
No 107
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.17 E-value=5.9 Score=43.09 Aligned_cols=211 Identities=17% Similarity=0.193 Sum_probs=116.0
Q ss_pred hhHHHHHHHHHhhccCCChHHH----HHHHHHHH-HcCCCCHHHHHHHHHHhhcCChH----hhHHHHHHHHhhhc-CCC
Q 007343 78 VLKKMCYLYVGNYAKVNPDLAL----LTINFLQR-DCKDEDPMIRGLALRSLCSLRVA----NLVEYLVGPLGLGL-KDN 147 (607)
Q Consensus 78 ~~Krl~YL~l~~~~~~~~el~~----L~iNtl~k-Dl~~~n~~ir~lALr~l~~i~~~----e~~~~l~~~i~~~L-~d~ 147 (607)
..++++.++...+..-+++..+ -.++.+.+ -+...++..|..|++.+|.+-+. +..+.+...+.... ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 6788998888888776666543 13333333 34566799999999999987443 33444444444433 344
Q ss_pred ChHHHHHHHHHHHH-----HHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcc
Q 007343 148 NSYVRTVAVIGVLK-----LYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (607)
Q Consensus 148 ~~~VRK~A~lal~k-----l~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~ 222 (607)
.+--|..++..+.. +-|.+|.. .++.+.+.+++ +|+ .+-..|..++.-+....++.-...+.....++.
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~---~~~~~~L~~lL-~~~--~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLy 316 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLA---TELLDKLLELL-SSP--ELGQQAAKAFGILLSDSDDVLNKENHANVKLLY 316 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchH---HHHHHHHHHHh-CCh--hhHHHHHHHHhhHhcCcHHhcCccccchhhhHH
Confidence 55556655555533 34566765 36888898985 663 344444455555544422211000101111111
Q ss_pred hH-----HHHHHHhhcCCCChhHHHHHHHHHhccCCCCh-----hHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCc
Q 007343 223 KP-----VIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS-----NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM 292 (607)
Q Consensus 223 ~~-----~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~-----~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~ 292 (607)
+| ++.+|++.....++-.+...|..|....+.-| .+...+++.+..-|...++.|..++..++..+....
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 21 23344444444333244444554444333322 234567777777777788888888888877655443
Q ss_pred ch
Q 007343 293 TD 294 (607)
Q Consensus 293 ~~ 294 (607)
++
T Consensus 397 ~~ 398 (415)
T PF12460_consen 397 PE 398 (415)
T ss_pred HH
Confidence 33
No 108
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=1.6 Score=49.28 Aligned_cols=150 Identities=17% Similarity=0.033 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhh-hhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHH-HcCCCCHHHHHH
Q 007343 42 DSKRELFKKVISYMTIGIDVSAVFGEM-VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR-DCKDEDPMIRGL 119 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d~s~lf~~v-i~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~k-Dl~~~n~~ir~l 119 (607)
++-+..+.-=|++.+.|..=. +-.. -+++..+|..+|+-|-+.+..-...... --+|-++.. ..+|.|.-||..
T Consensus 499 eki~RGl~vGiaL~~ygrqe~--Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn--nkair~lLh~aVsD~nDDVrRa 574 (929)
T KOG2062|consen 499 EKIIRGLAVGIALVVYGRQED--ADPLIKELLRDKDPILRYGGMYTLALAYVGTGN--NKAIRRLLHVAVSDVNDDVRRA 574 (929)
T ss_pred HHHHHHHHHhHHHHHhhhhhh--hHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc--hhhHHHhhcccccccchHHHHH
Confidence 455666666677777775321 3333 4578888999998887655332221111 124444444 367999999999
Q ss_pred HHHHhhcC--ChHhhHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHH
Q 007343 120 ALRSLCSL--RVANLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCL 196 (607)
Q Consensus 120 ALr~l~~i--~~~e~~~~l~~~i~~~L~-d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~ 196 (607)
|..++|-+ ++|+.++... .+|+ +-||+||--||+|+.=.+.-... .+.++.|..+. +|+...|+..|+
T Consensus 575 AVialGFVl~~dp~~~~s~V----~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl~-~D~~~fVRQgAl 645 (929)
T KOG2062|consen 575 AVIALGFVLFRDPEQLPSTV----SLLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPLT-SDPVDFVRQGAL 645 (929)
T ss_pred HHHHheeeEecChhhchHHH----HHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhhh-cChHHHHHHHHH
Confidence 99999987 6677655443 4444 45999999999999877643222 35788888885 899999999999
Q ss_pred HHHHHHHh
Q 007343 197 SALQEIWS 204 (607)
Q Consensus 197 ~~L~ei~~ 204 (607)
.++.-|.-
T Consensus 646 Ia~amIm~ 653 (929)
T KOG2062|consen 646 IALAMIMI 653 (929)
T ss_pred HHHHHHHH
Confidence 88887754
No 109
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.89 E-value=9 Score=39.55 Aligned_cols=239 Identities=14% Similarity=0.172 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhcCCCc-chhhhhhhhhccCCCchhHHHHHHHHHhhccCCC-----hHHHHHH-HHHHHHc----CCC
Q 007343 44 KRELFKKVISYMTIGIDV-SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNP-----DLALLTI-NFLQRDC----KDE 112 (607)
Q Consensus 44 k~~~l~kli~~~~~G~d~-s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~-----el~~L~i-Ntl~kDl----~~~ 112 (607)
+..++.++.-.| -|-.+ ..+.++.-.-+-.+|-..|-+..--+..+.+... ++ ++++ |-+.|-+ ...
T Consensus 63 cVscLERLfkak-egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVsei-llvvNaeilklildcIgge 140 (524)
T KOG4413|consen 63 CVSCLERLFKAK-EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEI-LLVVNAEILKLILDCIGGE 140 (524)
T ss_pred HHHHHHHHHhhc-cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHH-HHHhhhhHHHHHHHHHcCC
Confidence 566777766655 44433 3344444334446666777776665555554322 33 4444 4455533 567
Q ss_pred CHHHHHHHHHHhhcCC-hHhhHHHHHHH-------HhhhcCCCChHHHHHHHHHHHHHHhhCCCCc---CCCCchHHHHH
Q 007343 113 DPMIRGLALRSLCSLR-VANLVEYLVGP-------LGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKH 181 (607)
Q Consensus 113 n~~ir~lALr~l~~i~-~~e~~~~l~~~-------i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~---~~~~~~~~L~~ 181 (607)
|..+--.|+.++.+|. .|.-.+.+.+. +.++-.-.+..+|-...--+.+++..+|+.. ...++++.|..
T Consensus 141 ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLea 220 (524)
T KOG4413|consen 141 DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEA 220 (524)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHH
Confidence 8888889999999884 45555555432 1122223467888888888999999999865 34577777776
Q ss_pred hhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC--CCChhHHHHHHHHHhccC-CC----
Q 007343 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK--EFSEWAQCLVLELVAKYV-PL---- 254 (607)
Q Consensus 182 lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~--~~~~w~qi~iL~lL~~~~-~~---- 254 (607)
=|..-.|..|+++++-+..++.....+ +..+-....+..+++.+. +.+||..-..|-...++. ..
T Consensus 221 ElkGteDtLVianciElvteLaeteHg--------reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimd 292 (524)
T KOG4413|consen 221 ELKGTEDTLVIANCIELVTELAETEHG--------REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMD 292 (524)
T ss_pred HhcCCcceeehhhHHHHHHHHHHHhhh--------hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhh
Confidence 654558999999999999999765432 112222235677777775 578888875555444432 21
Q ss_pred -ChhH-HHHHHHHH---HHHhccCchHHHHHHHHHHHhhcCCc
Q 007343 255 -DSNE-IFDIMNLL---EDRLQHANGAVVLSTIKVFLHLTLSM 292 (607)
Q Consensus 255 -~~~~-~~~il~~l---~~~L~~~n~aVv~~ai~~i~~l~~~~ 292 (607)
.++. .+.++-.+ ..++....+...-.|+-++..++.+.
T Consensus 293 vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 293 VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 1111 11222222 33445566666667777777776543
No 110
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.85 E-value=2 Score=44.38 Aligned_cols=283 Identities=16% Similarity=0.201 Sum_probs=159.0
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhc
Q 007343 145 KDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI 221 (607)
Q Consensus 145 ~d~~~~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li 221 (607)
.+......=.|+-++..+..-..+ .+.+.+.++.+.++| .+++..|+-.++=+|..|+-.++ .|++.. +
T Consensus 125 ~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL-~s~~~~V~eQavWALGNiAGDS~-----~~RD~v--L 196 (526)
T COG5064 125 EIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLL-SSTEDDVREQAVWALGNIAGDSE-----GCRDYV--L 196 (526)
T ss_pred hcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHH-cCchHHHHHHHHHHhccccCCch-----hHHHHH--H
Confidence 334445566888888888643222 234578899999984 88888999999999998876544 344432 1
Q ss_pred chHHHHHHHhhcCCCChhHHHHHHH----HHhccCC-----CChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCc
Q 007343 222 SKPVIYYLLNRIKEFSEWAQCLVLE----LVAKYVP-----LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM 292 (607)
Q Consensus 222 ~~~~~~~Ll~~l~~~~~w~qi~iL~----lL~~~~~-----~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~ 292 (607)
.-..+.-+++.+....+ .+.++| .|+.+++ -+-......++.+..++.+..+-|+..|.-.+-++....
T Consensus 197 ~~galeplL~ll~ss~~--~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~ 274 (526)
T COG5064 197 QCGALEPLLGLLLSSAI--HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP 274 (526)
T ss_pred hcCchHHHHHHHHhccc--hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc
Confidence 11123344443322211 122222 3344432 222345567888888889999999999998888876432
Q ss_pred chhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc---c-cc-cccceeeeccCCC-HhHHHHHHHHHHHc
Q 007343 293 TDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF---I-FA-SDYKHFYCQYNEP-SYVKKLKLEMLTAV 365 (607)
Q Consensus 293 ~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~---~-~~-~~~~~f~~~~~d~-~~Ik~~kL~iL~~l 365 (607)
-.-.+.+++ .+.+-|+.+|++.+..++-=+|+.+--++.-.-. + +. .-++.|-...+.| .-||+.+-=.+..+
T Consensus 275 ~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 275 NEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred HHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 211122332 2222366788888899998899988777654311 0 00 0011111112222 34666655544444
Q ss_pred cCCCCHHHH--------HHHHHHHhhcCCHHHHHHHHHHHHHHHc---ccCCh------HHHHHHHHHhhhhcCchhhHH
Q 007343 366 ANESNTYEI--------VTELCEYAANVDIPIARESIRAVGKIAL---QQYDV------NAIVDRLLQFLEMEKDYVTAE 428 (607)
Q Consensus 366 ~n~~N~~~I--------v~eL~~y~~~~d~~~~~~~i~~I~~la~---k~~~~------~~~v~~ll~ll~~~~~~v~~e 428 (607)
+ ..|.++| +.-|.+.+...|.-+++++.=+|....- ..|+. ..+++-|-++|....+.+.+-
T Consensus 355 T-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev 433 (526)
T COG5064 355 T-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEV 433 (526)
T ss_pred c-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhh
Confidence 3 3455443 2334555556677788888888877543 23442 125555666665554445444
Q ss_pred HHHHHHHHHH
Q 007343 429 ALVLVKDLLR 438 (607)
Q Consensus 429 ~i~~i~~i~~ 438 (607)
.+..+.+|++
T Consensus 434 ~LD~~eniLk 443 (526)
T COG5064 434 ALDAIENILK 443 (526)
T ss_pred hHHHHHHHHh
Confidence 4555555544
No 111
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=93.84 E-value=3.6 Score=47.75 Aligned_cols=258 Identities=13% Similarity=0.080 Sum_probs=164.8
Q ss_pred cchhhhhhhhhccCCCchhHHHHHHHHHhhccC--CChHHHHHHHHHHHHcCCCCHHHHHHHHH-------HhhcCChHh
Q 007343 61 VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKV--NPDLALLTINFLQRDCKDEDPMIRGLALR-------SLCSLRVAN 131 (607)
Q Consensus 61 ~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~--~~el~~L~iNtl~kDl~~~n~~ir~lALr-------~l~~i~~~e 131 (607)
.+..++.+-.++.+++...|..-=......... .+...-....-+..-++|..|.||..-+. ..+.++..-
T Consensus 396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred hhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 444567777777777877776533333333211 11212223334445566777777766553 444456777
Q ss_pred hHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccch
Q 007343 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (607)
Q Consensus 132 ~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~ 211 (607)
..+.+.|.+..+-.|.+.-||.+..-.+..+....-..+.++.+.+.+...+ .|....+.-+|..-+..+....+..
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l-~d~v~~Ir~~aa~~l~~l~~~~G~~-- 552 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWL-PDHVYSIREAAARNLPALVETFGSE-- 552 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhh-hhhHHHHHHHHHHHhHHHHHHhCcc--
Confidence 7888888888888888899998888887776654333332344555555553 5667778888887787777654421
Q ss_pred hhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC--ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhc
Q 007343 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL--DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (607)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~--~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~ 289 (607)
.+ . ...+.+++....+.+=|....++..+..+.+. .+-...+++..+..+.....+.|.+.+++.+-.+.
T Consensus 553 -w~------~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 553 -WA------R-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred -hh------H-HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 11 1 12466777766666667777777777655432 33334568888888888899999999999887766
Q ss_pred CCcc-hhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh
Q 007343 290 LSMT-DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 290 ~~~~-~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~ 332 (607)
+... +... +.+.+.+.+|..+.+.|+||.+..+...+...
T Consensus 625 ~~L~~~~~~---~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~ 665 (759)
T KOG0211|consen 625 KLLDESVRD---EEVLPLLETLSSDQELDVRYRAILAFGSIELS 665 (759)
T ss_pred hhcchHHHH---HHHHHHHHHhccCcccchhHHHHHHHHHHHHH
Confidence 5422 1111 23455566777788999999999998877644
No 112
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.77 E-value=14 Score=41.19 Aligned_cols=252 Identities=21% Similarity=0.243 Sum_probs=128.4
Q ss_pred CCchhHHHHHH-HHHhh-ccCCChHHHHHHH---HHHHHcCCCCHHHHHHHHHHhhcC----Ch--HhhHHHHHHHHhhh
Q 007343 75 SDIVLKKMCYL-YVGNY-AKVNPDLALLTIN---FLQRDCKDEDPMIRGLALRSLCSL----RV--ANLVEYLVGPLGLG 143 (607)
Q Consensus 75 ~~~~~Krl~YL-~l~~~-~~~~~el~~L~iN---tl~kDl~~~n~~ir~lALr~l~~i----~~--~e~~~~l~~~i~~~ 143 (607)
+....|-+-++ ....| ...+||..-++-. .+.+.+.+++-.||-..+.-++-+ +. +.+...+..-+.+-
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44455545444 22223 2345664445544 445566777777776666555544 22 44555666666667
Q ss_pred cCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcch
Q 007343 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (607)
Q Consensus 144 L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~ 223 (607)
+-|..+.||+-|+.|+.++-...-+. +......+...+.+|+...|+.+|+.-+.-=....| ...+.|.+......+
T Consensus 141 ~~DRE~~VR~eAv~~L~~~Qe~~~ne--en~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p-~IlERarDv~~anRr 217 (885)
T COG5218 141 LFDREKAVRREAVKVLCYYQEMELNE--ENRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYP-CILERARDVSGANRR 217 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcch-hHHHHhhhhhHHHHH
Confidence 78999999999999999875432221 123456777777789999999887644322111112 123444433221112
Q ss_pred HHHHHHHhhcCCC-----------ChhHH--------HHHHHHHhc-cC-CCChhHHHHHHHHHHHHhccCchHHHHHHH
Q 007343 224 PVIYYLLNRIKEF-----------SEWAQ--------CLVLELVAK-YV-PLDSNEIFDIMNLLEDRLQHANGAVVLSTI 282 (607)
Q Consensus 224 ~~~~~Ll~~l~~~-----------~~w~q--------i~iL~lL~~-~~-~~~~~~~~~il~~l~~~L~~~n~aVv~~ai 282 (607)
-.+.+.+..+++. -+|+- -.+.++++. |. |.+ .++++.+ ..|.-++.+|.-.|+
T Consensus 218 ~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d----~~lveLl-e~lDvSr~sv~v~ai 292 (885)
T COG5218 218 MVYERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPED----LRLVELL-EFLDVSRRSVLVAAI 292 (885)
T ss_pred HHHHHHhhhhcchhhccccceehhhhhcchhhhhhHHHHHHHHHHHHhccccc----ccHHHHH-HHHhhhhHHHHHHHH
Confidence 2344455555331 33432 233333332 11 111 1233333 234445566888999
Q ss_pred HHHHhhcCCcc-h--hHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccc
Q 007343 283 KVFLHLTLSMT-D--VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF 337 (607)
Q Consensus 283 ~~i~~l~~~~~-~--~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~ 337 (607)
+.+..-.+..- . .-.++...... =.+||. ..+.-|..=.++..+..+.|+..
T Consensus 293 k~~F~~R~D~ls~~eFPe~~w~d~T~-E~tfL~--rt~~lyCldnNitell~~fPe~~ 347 (885)
T COG5218 293 KGVFEKRPDVLSEKEFPEYLWSDPTE-ENTFLS--RTELLYCLDNNITELLGRFPESL 347 (885)
T ss_pred HHHHhhccccchhhhcHHHHhhCchH-HHHHHH--HHHHHHHHhccHHHHHhhchhhh
Confidence 98876543211 0 11111111000 023443 23445555566777777777643
No 113
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=21 Score=42.39 Aligned_cols=243 Identities=19% Similarity=0.180 Sum_probs=128.1
Q ss_pred hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCC-CChhHHHHHHHHHHHHHhhcc
Q 007343 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 129 ~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D-~d~~V~~~a~~~L~ei~~~~~ 207 (607)
.|+++|.++..+..+++|.+..||-.||-+++|+....|-.+- .+.+..+.+++ +- .+++.-..|+.+|.|++...
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La-d~vi~svid~~-~p~e~~~aWHgacLaLAELA~rG- 411 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA-DQVIGSVIDLF-NPAEDDSAWHGACLALAELALRG- 411 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH-HHHHHHHHHhc-CcCCchhHHHHHHHHHHHHHhcC-
Confidence 3688999999999999999999999999999999988874331 23344444432 22 24566667788888876431
Q ss_pred ccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhc-cCchHHHHHHHHHHH
Q 007343 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ-HANGAVVLSTIKVFL 286 (607)
Q Consensus 208 ~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~-~~n~aVv~~ai~~i~ 286 (607)
++-+..+..++. .|++.|. |. ..+-+ +.+..|.=+|.=+..
T Consensus 412 ------------lLlps~l~dVvp-----------lI~kaL~-Yd--------------~~~G~~s~G~~VRDaAcY~~W 453 (1133)
T KOG1943|consen 412 ------------LLLPSLLEDVVP-----------LILKALH-YD--------------VRRGQHSVGQHVRDAACYVCW 453 (1133)
T ss_pred ------------CcchHHHHHHHH-----------HHHHHhh-hh--------------hhhcccccccchHHHHHHHHH
Confidence 111111111111 1111111 10 00111 223334333332333
Q ss_pred hhcC-Ccc-hhHHHHHHHHHHHH-HHHhccCCchhHHHHHHHHHHHHhhCCcc-----cccccceeeeccCCCHhHHHHH
Q 007343 287 HLTL-SMT-DVHQQVYERIKAPL-LTLVSSGSPEQSYAVLSHLHILVMRAPFI-----FASDYKHFYCQYNEPSYVKKLK 358 (607)
Q Consensus 287 ~l~~-~~~-~~~~~~~~~l~~~L-~~ll~s~~~ni~y~~L~~i~~l~~~~p~~-----~~~~~~~f~~~~~d~~~Ik~~k 358 (607)
.+.- +.+ +++. ++.++...| +.-+=+++-|.|+.|--++...+-+.++. +..+++.|-+. +. ..--
T Consensus 454 Af~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~-~r----sNcy 527 (1133)
T KOG1943|consen 454 AFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVT-NR----SNCY 527 (1133)
T ss_pred HHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhh-hh----hhHH
Confidence 3221 122 2332 444444443 22233688999999999999999887653 11222211110 00 0001
Q ss_pred HHHHHHcc-CCCCHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHcccCCh--HHHHHHHHHhh
Q 007343 359 LEMLTAVA-NESNTYEIVTELCEY-AANVDIPIARESIRAVGKIALQQYDV--NAIVDRLLQFL 418 (607)
Q Consensus 359 L~iL~~l~-n~~N~~~Iv~eL~~y-~~~~d~~~~~~~i~~I~~la~k~~~~--~~~v~~ll~ll 418 (607)
+++=..++ .+.=...++++|..- +..=|+.++.-+..++.++++..|+. ..++.-+++-.
T Consensus 528 ~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ 591 (1133)
T KOG1943|consen 528 LDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST 591 (1133)
T ss_pred HHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh
Confidence 22222222 111234455555433 33348888888999999999988862 23444444443
No 114
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.37 E-value=13 Score=43.26 Aligned_cols=298 Identities=17% Similarity=0.203 Sum_probs=153.3
Q ss_pred CChhHHHHHHHHHhccCCC---ChhHHHHHHHHHHHHh-ccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHh
Q 007343 236 FSEWAQCLVLELVAKYVPL---DSNEIFDIMNLLEDRL-QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV 311 (607)
Q Consensus 236 ~~~w~qi~iL~lL~~~~~~---~~~~~~~il~~l~~~L-~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll 311 (607)
-.|.+-..++-.+.+|... ++.-...+++.....+ .+..+.+..+|++++..++.. .+-+.....+-..|..+.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLSLQPMILDGLLQLA 539 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccccchHHHHHHHHHc
Confidence 3566655666666666432 3444444555544443 355677889999998877732 222222334444566677
Q ss_pred ccCCchhHHHHHHHHHHHHhhCCcccc-------cccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhc
Q 007343 312 SSGSPEQSYAVLSHLHILVMRAPFIFA-------SDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAAN 384 (607)
Q Consensus 312 ~s~~~ni~y~~L~~i~~l~~~~p~~~~-------~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~ 384 (607)
+..+.++--+.++.+...+..+|+.-. +..-..|.++.++.||-...
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~-------------------------- 593 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLA-------------------------- 593 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHH--------------------------
Confidence 777888888999999999988876311 11111223332222343333
Q ss_pred CCHHHHHHHHHHHHHHHcccCC-hHHHHHHHHHhhhhcCch----hhHHHHHHHHHHHHhCCC-Cch----hHHHHHHhh
Q 007343 385 VDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEMEKDY----VTAEALVLVKDLLRKYPQ-WSH----DCIAVVGSI 454 (607)
Q Consensus 385 ~d~~~~~~~i~~I~~la~k~~~-~~~~v~~ll~ll~~~~~~----v~~e~i~~i~~i~~~~p~-~~~----~~~~~l~~l 454 (607)
.++++.+...+..+.+ ...++.++++.+...++. ...-++.++.-++|+-|. +-. ++...+.++
T Consensus 594 ------qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~ 667 (1005)
T KOG2274|consen 594 ------QDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKI 667 (1005)
T ss_pred ------HHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhh
Confidence 3344444444555544 345677777777665522 223334455556666553 211 222333333
Q ss_pred hhccCC------chHHHHHHHHH----HhcccCCC-CChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHH
Q 007343 455 SSQNVQ------EPKAKAALIWM----LGEYSQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKV 523 (607)
Q Consensus 455 ~~~~~~------~~~~~~~~iwi----lGEy~~~i-~~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~ 523 (607)
..++-+ ..+..++.+.. +-+|...- -+--+++..+.+-...+.|..+-+..=-.+.-++.|.+.++.+.
T Consensus 668 tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n 747 (1005)
T KOG2274|consen 668 TLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPN 747 (1005)
T ss_pred eeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchh
Confidence 322111 22344444444 33332211 11224444444333333322222222233444455556677776
Q ss_pred HHHHHHHhhcC-CChh----HHhHHHHHHHHccCCHHHHhhhcCCCCCCc
Q 007343 524 LGAALAAGLAD-FHQD----VHDRALFYHRLLQYNVSVAERVVNPPKQAV 568 (607)
Q Consensus 524 ~~~~l~~~~~d-~~~d----vrdRA~~y~~Ll~~~~~~~~~i~~~~~p~~ 568 (607)
++++|..+..- ...| +|+--.-+-.|.-.+.+..-.++++ .|.+
T Consensus 748 ~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~l~FL~S-lp~~ 796 (1005)
T KOG2274|consen 748 LDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQLLNFLSS-LPGP 796 (1005)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHHHHHHHh-CCCC
Confidence 77777665432 2344 7777777778887787776667765 4443
No 115
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.10 E-value=0.47 Score=39.94 Aligned_cols=68 Identities=19% Similarity=0.130 Sum_probs=53.5
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHhhCC-CCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 139 ~i~~~L~d~~~~VRK~A~lal~kl~~~~p-~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
.+..-+.|+.+-||--|+.-+.++.+... .....+.....+.+. +.|+|+-|-.||+..|..++...|
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~-L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQ-LKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHCh
Confidence 34566799999999999999999998766 332224556666676 599999999999999999987654
No 116
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=8.7 Score=48.07 Aligned_cols=110 Identities=15% Similarity=0.111 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC----Ch-HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 96 DLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV-ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 96 el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i----~~-~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
++--++.-.+..++..+||..|+-|-.+++.+ +. +-+.+..-..++++-+-.+|+-|---.++++-+++......
T Consensus 872 ~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~ 951 (2067)
T KOG1822|consen 872 EVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIG 951 (2067)
T ss_pred HHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCC
Confidence 34446666778899999999999998888876 22 33344444444555445566666666777777776555554
Q ss_pred CCCCchH---HHHHhhcCCCCh-hHHHHHHHHHHHHHhhc
Q 007343 171 IDADFPP---TLKHLMLNDPDP-QVVANCLSALQEIWSLE 206 (607)
Q Consensus 171 ~~~~~~~---~L~~lLl~D~d~-~V~~~a~~~L~ei~~~~ 206 (607)
....+.. .+..+ ..|+.+ .|...++.++.-+....
T Consensus 952 s~qhl~t~v~illal-~~Ds~~p~VqtwSL~al~~i~~s~ 990 (2067)
T KOG1822|consen 952 SGQHLNTSVSILLAL-ATDSTSPVVQTWSLHALALILDSS 990 (2067)
T ss_pred CchhcccHHHHHHHH-hhcCCCchhhhhHHHHHHHHHcCC
Confidence 4444444 66666 477665 88999999999887544
No 117
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=92.65 E-value=0.35 Score=47.21 Aligned_cols=130 Identities=17% Similarity=0.120 Sum_probs=86.2
Q ss_pred hhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCC-C-HHHHHHHHHHhhcCChHhhHHHHHHHHhhhcC
Q 007343 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDE-D-PMIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (607)
Q Consensus 68 vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~-n-~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~ 145 (607)
+-.+..+...+.|-++++.+........+- .++.+.+-+.+- | ..+=++|-+.++.+.... +.+.+.+.+-+.
T Consensus 56 ~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~ 130 (213)
T PF08713_consen 56 ADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWAK 130 (213)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHh
Confidence 345778888888888888887655332221 344555555443 3 345556667767653221 345566677788
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 146 d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
|+++++||.|+.++.+.++. +.. ..+.+.+... ..|++..|.-+.--+|.++...+|
T Consensus 131 s~~~w~rR~~~v~~~~~~~~--~~~--~~~l~~~~~~-~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 131 SDNEWVRRAAIVMLLRYIRK--EDF--DELLEIIEAL-LKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp CSSHHHHHHHHHCTTTHGGG--CHH--HHHHHHHHHC-TTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred CCcHHHHHHHHHHHHHHHHh--cCH--HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999887766 222 2455666665 489999999998889999988765
No 118
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.29 E-value=14 Score=37.44 Aligned_cols=102 Identities=11% Similarity=0.087 Sum_probs=64.7
Q ss_pred cCCchhHHHHHHHHHHHHhhCCccccccc----ceeee--------ccCCCHhHH--HHHHHHHHHccC-CCCHHHHHHH
Q 007343 313 SGSPEQSYAVLSHLHILVMRAPFIFASDY----KHFYC--------QYNEPSYVK--KLKLEMLTAVAN-ESNTYEIVTE 377 (607)
Q Consensus 313 s~~~ni~y~~L~~i~~l~~~~p~~~~~~~----~~f~~--------~~~d~~~Ik--~~kL~iL~~l~n-~~N~~~Iv~e 377 (607)
.+||.-=-++.+.+..+++..+. .++. +.++| ..|||.-|. .+|..+.-.++. +.=....+.-
T Consensus 135 EkDPRnLl~~F~l~~~i~~~~~~--~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~ 212 (262)
T PF14500_consen 135 EKDPRNLLLSFKLLKVILQEFDI--SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPL 212 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhccc--chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHH
Confidence 47887777777777777777652 2222 12222 357774343 445555555664 3444567777
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHcccCCh--HHHHHHHHH
Q 007343 378 LCEYAANVDIPIARESIRAVGKIALQQYDV--NAIVDRLLQ 416 (607)
Q Consensus 378 L~~y~~~~d~~~~~~~i~~I~~la~k~~~~--~~~v~~ll~ 416 (607)
|++=+.+.....+.++.+++..|+.+|+.. ..++..+.+
T Consensus 213 LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 213 LLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 778888888889999999999999999742 344444443
No 119
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.21 E-value=2 Score=40.31 Aligned_cols=121 Identities=20% Similarity=0.217 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC-Ccccccccceee------eccCCCHhHHHHHHHHHHHccCCCCHH
Q 007343 300 YERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASDYKHFY------CQYNEPSYVKKLKLEMLTAVANESNTY 372 (607)
Q Consensus 300 ~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~-p~~~~~~~~~f~------~~~~d~~~Ik~~kL~iL~~l~n~~N~~ 372 (607)
+.++..-+.++++++++.-|+.|+..+...++.. ++.|..+...++ +..+||..++..++..|..+
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l------- 95 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL------- 95 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------
Confidence 3444455677898999999999999999999887 677766554322 22355555555555544443
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCch
Q 007343 373 EIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH 445 (607)
Q Consensus 373 ~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~ 445 (607)
..++.+ -+++.|+.. -|....++..++++++. ++...++...+..++..||....
T Consensus 96 ------~~~~~~-~p~l~Rei~---------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r 150 (165)
T PF08167_consen 96 ------FDLIRG-KPTLTREIA---------TPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR 150 (165)
T ss_pred ------HHHhcC-CCchHHHHh---------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc
Confidence 233332 223333321 12223467777777765 56788889999999999997643
No 120
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.00 E-value=7.7 Score=40.10 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 139 ~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
-|..++.++++.||+.|+.|++-+.-.+++.. .+.+..+...+ ...+..|...|+.++.++....+
T Consensus 31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a--~~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 31 LILPAVQSSDPAVRELALKCLGLCCLLDKELA--KEHLPLFLQAL-QKDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcC
Confidence 34467777888888888888888887777665 34566666664 44477888888888888765543
No 121
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.84 E-value=27 Score=39.65 Aligned_cols=228 Identities=14% Similarity=0.123 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHhc--CCCcchhhhhhhhhccCCCchh------------HHHHHHHHHhhccC-CChHHHHHHHHHH
Q 007343 42 DSKRELFKKVISYMTI--GIDVSAVFGEMVMCSATSDIVL------------KKMCYLYVGNYAKV-NPDLALLTINFLQ 106 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~--G~d~s~lf~~vi~l~~s~~~~~------------Krl~YL~l~~~~~~-~~el~~L~iNtl~ 106 (607)
.+-++.++++...... ..|....|..+++++..-+.+. ++.-.+|+-.++.. .++-...+...++
T Consensus 288 ~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~ 367 (574)
T smart00638 288 VQIVEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLSEEQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIK 367 (574)
T ss_pred hhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445566665554332 2345666777776664333221 11112222222222 2232334444454
Q ss_pred HHcCCCCHHHHHHHHHHhhcC---ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC------CCCchH
Q 007343 107 RDCKDEDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI------DADFPP 177 (607)
Q Consensus 107 kDl~~~n~~ir~lALr~l~~i---~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~------~~~~~~ 177 (607)
++=- ++...+-++..+... .++++++.+.+.++.--.-+++++|..|++++..+.+.+-..-. ..++++
T Consensus 368 ~~~~--~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~ 445 (574)
T smart00638 368 NKKI--TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLK 445 (574)
T ss_pred cCCC--CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Confidence 4222 333444444443332 46777887776665544556899999999999988653321110 024555
Q ss_pred HHHHhh---cCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc---CCCChhHHHHHHHHHhcc
Q 007343 178 TLKHLM---LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI---KEFSEWAQCLVLELVAKY 251 (607)
Q Consensus 178 ~L~~lL---l~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l---~~~~~w~qi~iL~lL~~~ 251 (607)
.+.+.| .++.|...+..++.+|.-+... ..+..+...+ ...++..+...+..|.+.
T Consensus 446 ~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~------------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~ 507 (574)
T smart00638 446 YLHELLQQAVSKGDEEEIQLYLKALGNAGHP------------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNL 507 (574)
T ss_pred HHHHHHHHHHhcCCchheeeHHHhhhccCCh------------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 555543 1345555566666667654321 1222222222 245678888888888866
Q ss_pred CCCChhHHHHHHHHHHHHhcc--CchHHHHHHHHHHHhhcCCc
Q 007343 252 VPLDSNEIFDIMNLLEDRLQH--ANGAVVLSTIKVFLHLTLSM 292 (607)
Q Consensus 252 ~~~~~~~~~~il~~l~~~L~~--~n~aVv~~ai~~i~~l~~~~ 292 (607)
....++. +.+.+.+++.+ .++-|..+|.-.++...|+.
T Consensus 508 a~~~p~~---v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~ 547 (574)
T smart00638 508 AKRDPRK---VQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSV 547 (574)
T ss_pred HHhCchH---HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCH
Confidence 5444443 34555555544 35679999998888876653
No 122
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=91.84 E-value=9.9 Score=44.49 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=77.4
Q ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHhhcC----ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc-CCC
Q 007343 100 LTINFLQRDCK-DEDPMIRGLALRSLCSL----RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC-IDA 173 (607)
Q Consensus 100 L~iNtl~kDl~-~~n~~ir~lALr~l~~i----~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~-~~~ 173 (607)
.++-.+.+-++ |.-.-++-.|.+.+.++ ....+.+.+.-.++.+.+|+-.-|||+++-++.++....|-.+ ...
T Consensus 576 ~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~ 655 (1529)
T KOG0413|consen 576 DVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSS 655 (1529)
T ss_pred HHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhH
Confidence 44455555555 44445666777766665 2345666666667778899999999999999999999999877 335
Q ss_pred CchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 174 ~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
.|...|..++ +|.+..|...|...+....
T Consensus 656 ~wl~~li~~~-~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 656 KWLHTLISML-NDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHH-hccHHHHHHHHHHHHHHHH
Confidence 7999999984 9999999999988777664
No 123
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=1.6 Score=48.98 Aligned_cols=149 Identities=23% Similarity=0.262 Sum_probs=94.1
Q ss_pred ChHhhHHHHH-HHHhhhcCCCChHHHHHHHHHHHHHHhh-CCCCc--CCC----CchHHHHHhhcCCCChhHHHHHHHHH
Q 007343 128 RVANLVEYLV-GPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTC--IDA----DFPPTLKHLMLNDPDPQVVANCLSAL 199 (607)
Q Consensus 128 ~~~e~~~~l~-~~i~~~L~d~~~~VRK~A~lal~kl~~~-~p~~~--~~~----~~~~~L~~lLl~D~d~~V~~~a~~~L 199 (607)
+.++|.=.+. |.+-++|.-+|..||-.|+.-+.-+|-. +|+.- ... .=...+.++ +.|+-|+|++.|+.-+
T Consensus 166 gVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~L-L~d~~p~VRS~a~~gv 244 (1005)
T KOG1949|consen 166 GVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSL-LEDPYPMVRSTAILGV 244 (1005)
T ss_pred hHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHH
Confidence 4455544444 5566789999999999999999988864 56651 101 113456777 5999999999998777
Q ss_pred HHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC-----CCChhHHHHHHHHHhcc--CCCChhHHHHHHHHHHHHhcc
Q 007343 200 QEIWSLEASTSEEASREREALISKPVIYYLLNRIK-----EFSEWAQCLVLELVAKY--VPLDSNEIFDIMNLLEDRLQH 272 (607)
Q Consensus 200 ~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~-----~~~~w~qi~iL~lL~~~--~~~~~~~~~~il~~l~~~L~~ 272 (607)
..+.. .+|.++.+.++..++..+- +..--..+.+.+-|... .|..-...+.++.++...|+.
T Consensus 245 ~k~~s-----------~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D 313 (1005)
T KOG1949|consen 245 CKITS-----------KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHD 313 (1005)
T ss_pred HHHHH-----------HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhc
Confidence 66643 3577777777788777652 22223444444444432 344434444556666666666
Q ss_pred CchHHHHHHHHHHHhh
Q 007343 273 ANGAVVLSTIKVFLHL 288 (607)
Q Consensus 273 ~n~aVv~~ai~~i~~l 288 (607)
++..|..+++..++.+
T Consensus 314 ~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 314 NSEKVRVAFVDMLLKI 329 (1005)
T ss_pred cchhHHHHHHHHHHHH
Confidence 6667776666655544
No 124
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.63 E-value=0.19 Score=57.61 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchH
Q 007343 98 ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (607)
Q Consensus 98 ~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~ 177 (607)
.--..+.+.......+...+-++|++|||++.++.++.+.+.+..-- +.+..+|-.|+.|+.++-..+|+.+ .+
T Consensus 488 ~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v-----~~ 561 (618)
T PF01347_consen 488 VPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKV-----RE 561 (618)
T ss_dssp THHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHH-----HH
T ss_pred HHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHH-----HH
Confidence 33445556656667788999999999999999998888776654422 5578999999999998877777654 34
Q ss_pred HHHHhh-cCCCChhHHHHHHHHHHHH
Q 007343 178 TLKHLM-LNDPDPQVVANCLSALQEI 202 (607)
Q Consensus 178 ~L~~lL-l~D~d~~V~~~a~~~L~ei 202 (607)
.+.... ....++.|+.+|+.+|...
T Consensus 562 ~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 562 ILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 444543 2346789999999888774
No 125
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.15 E-value=1.3 Score=46.06 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=69.3
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhCCCCc---CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHh
Q 007343 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRERE 218 (607)
Q Consensus 142 ~~L~d~~~~VRK~A~lal~kl~~~~p~~~---~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~ 218 (607)
..+.++++.||..|+-.+..+.+.+|..- .+.++...|...+..|.+-.|...|+.+++.+..+++.- .+.+
T Consensus 131 ~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g-----~~~f 205 (342)
T KOG2160|consen 131 GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG-----QDEF 205 (342)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH-----HHHH
Confidence 47889999999999999999999998643 345678888887766777788899999999888765421 0111
Q ss_pred hhcchHHHHHHHhhcCC--CChhHHHHHHHHHhccC
Q 007343 219 ALISKPVIYYLLNRIKE--FSEWAQCLVLELVAKYV 252 (607)
Q Consensus 219 ~li~~~~~~~Ll~~l~~--~~~w~qi~iL~lL~~~~ 252 (607)
..++. +.-|.+.+.. .+.-.|.+++-+++.+.
T Consensus 206 l~~~G--~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 206 LKLNG--YQVLRDVLQSNNTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HhcCC--HHHHHHHHHcCCcchHHHHHHHHHHHHHH
Confidence 11111 2223333322 45566666666666554
No 126
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=90.85 E-value=14 Score=41.00 Aligned_cols=168 Identities=18% Similarity=0.255 Sum_probs=103.1
Q ss_pred cCCCCCChHHHHHHHHHHHHHHhc----CCC-cchhhhhhhhhccCCCchhHHHHHHHHHhhccCCC----hHHHHHHHH
Q 007343 34 GSRAPGIDDSKRELFKKVISYMTI----GID-VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNP----DLALLTINF 104 (607)
Q Consensus 34 ~~~~~~~~~~k~~~l~kli~~~~~----G~d-~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~----el~~L~iNt 104 (607)
.+|++...++-...++..+.+-+. |.+ |...|-|+++-..|+|...|+=+.-.+..+.+.-. ++.=...-.
T Consensus 57 ~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ek 136 (885)
T COG5218 57 CKKNPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEK 136 (885)
T ss_pred cccCCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 345555555566777777775543 444 44567789999999988887666555555444322 333345556
Q ss_pred HHHHcCCCCHHHHHHHHHHhhcCCh----Hh-hHHHHHHHHhhhcCCCChHHHHHHHHHHH-------------------
Q 007343 105 LQRDCKDEDPMIRGLALRSLCSLRV----AN-LVEYLVGPLGLGLKDNNSYVRTVAVIGVL------------------- 160 (607)
Q Consensus 105 l~kDl~~~n~~ir~lALr~l~~i~~----~e-~~~~l~~~i~~~L~d~~~~VRK~A~lal~------------------- 160 (607)
+.+-+-|..+.||--|+.++|.... ++ ....+...+.+ +||+..||+.|.+-+.
T Consensus 137 l~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~~vq--nDPS~EVRr~allni~vdnsT~p~IlERarDv~~a 214 (885)
T COG5218 137 LSERLFDREKAVRREAVKVLCYYQEMELNEENRIVNLLKDIVQ--NDPSDEVRRLALLNISVDNSTYPCILERARDVSGA 214 (885)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh--cCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHH
Confidence 6667778999999999999998743 22 12223323323 7999999999876542
Q ss_pred -----------HHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc
Q 007343 161 -----------KLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 161 -----------kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~ 206 (607)
++.++.-..+ ++... .++-. +.|.+.+|..++.-++..-|...
T Consensus 215 nRr~vY~r~Lp~iGd~~~lsi-~kri~-l~ewg-l~dRe~sv~~a~~d~ia~~w~~~ 268 (885)
T COG5218 215 NRRMVYERCLPRIGDLKSLSI-DKRIL-LMEWG-LLDREFSVKGALVDAIASAWRIP 268 (885)
T ss_pred HHHHHHHHHhhhhcchhhccc-cceeh-hhhhc-chhhhhhHHHHHHHHHHHHhccc
Confidence 1111111111 11111 33444 47899999999988887766543
No 127
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=90.57 E-value=17 Score=41.67 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChHhhHHHHHHHHhhhcCCCChHHHH
Q 007343 77 IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRT 153 (607)
Q Consensus 77 ~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~e~~~~l~~~i~~~L~d~~~~VRK 153 (607)
...|++.+=++.... .++-..++.+.+.++ .-.+..-..++..+... .+++++..+.+.++.--...++++|.
T Consensus 378 ~~~r~~~lDal~~aG--T~~av~~i~~~I~~~--~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ 453 (618)
T PF01347_consen 378 EQARKIFLDALPQAG--TNPAVKFIKDLIKSK--KLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRE 453 (618)
T ss_dssp HHHHHHHHHHHHHH---SHHHHHHHHHHHHTT---S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHH
T ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHH
Confidence 344444444444432 233334445555552 22233333444444433 34566666665555433456899999
Q ss_pred HHHHHHHHHHhhC-CC----------C-cCCCCchHHHHHhhc---CCCChhHHHHHHHHHHHHHhhccccchhhhhhHh
Q 007343 154 VAVIGVLKLYHIS-AP----------T-CIDADFPPTLKHLML---NDPDPQVVANCLSALQEIWSLEASTSEEASRERE 218 (607)
Q Consensus 154 ~A~lal~kl~~~~-p~----------~-~~~~~~~~~L~~lLl---~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~ 218 (607)
+|++++..+.+.. .. . .....+++.+.+.+. +..|......++.+|..+...
T Consensus 454 ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------------- 520 (618)
T PF01347_consen 454 TALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------------- 520 (618)
T ss_dssp HHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------------
T ss_pred HHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------------
Confidence 9999998875432 11 1 111356666665542 456667777788888776421
Q ss_pred hhcchHHHHHHHhhcCC---CChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccC--chHHHHHHHHHHHhhcCC
Q 007343 219 ALISKPVIYYLLNRIKE---FSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA--NGAVVLSTIKVFLHLTLS 291 (607)
Q Consensus 219 ~li~~~~~~~Ll~~l~~---~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~--n~aVv~~ai~~i~~l~~~ 291 (607)
..+..|...+.+ .+...+...+..|+++....++ .+.+.+.+++.+. ++-|..+|...++...|+
T Consensus 521 -----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~---~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~ 590 (618)
T PF01347_consen 521 -----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE---KVREILLPIFMNTTEDPEVRIAAYLILMRCNPS 590 (618)
T ss_dssp -----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH---HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---
T ss_pred -----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH---HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCC
Confidence 124455554433 4677888888888877555444 4456666666543 467999999888887665
No 128
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=89.59 E-value=0.62 Score=30.48 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=23.4
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 007343 176 PPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (607)
Q Consensus 176 ~~~L~~lLl~D~d~~V~~~a~~~L~ei~~ 204 (607)
++.+.+++ +|+++.|+.+|+.+|..+.+
T Consensus 2 lp~l~~~l-~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLL-NDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHH-T-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHh
Confidence 56778884 99999999999999999875
No 129
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=89.38 E-value=33 Score=36.66 Aligned_cols=206 Identities=17% Similarity=0.160 Sum_probs=131.7
Q ss_pred HHhccCCchhHHHHHHHHHHHHhhCCc---ccccccceeeec----cCCCHhHHHHHHHHHHHccCCCC-H----HHHHH
Q 007343 309 TLVSSGSPEQSYAVLSHLHILVMRAPF---IFASDYKHFYCQ----YNEPSYVKKLKLEMLTAVANESN-T----YEIVT 376 (607)
Q Consensus 309 ~ll~s~~~ni~y~~L~~i~~l~~~~p~---~~~~~~~~f~~~----~~d~~~Ik~~kL~iL~~l~n~~N-~----~~Iv~ 376 (607)
.++++ +.++|-.|++.+..++..... +.+.++..|.++ .+....=|..+|.+..++.+-.+ . ..++.
T Consensus 33 ~lL~~-~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 33 MLLSD-SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred HHCCC-cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 35554 599999999998877765432 345567777643 23335568889999888765532 2 56788
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHcccCCh-HH--HHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHH--HH
Q 007343 377 ELCEYAANVDIPIARESIRAVGKIALQQYDV-NA--IVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIA--VV 451 (607)
Q Consensus 377 eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-~~--~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~--~l 451 (607)
-+..-+.+.|+.++.-++..++.++...|+. .+ -+.++++.+..+.-.+.+-++.++-.++ ..|..|.+... -+
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL 190 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDL 190 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccH
Confidence 8888888889999999999999999999973 33 4677777766543234444444555554 34554432110 01
Q ss_pred Hhhh---hcc----C-Cch------HHHHHHHHHHhcccCCCC---ChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhh
Q 007343 452 GSIS---SQN----V-QEP------KAKAALIWMLGEYSQDMQ---DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (607)
Q Consensus 452 ~~l~---~~~----~-~~~------~~~~~~iwilGEy~~~i~---~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~ 514 (607)
..++ .+. . ++. .++.++.-++--+...+. +...-++.+++.+.... +++|-.+|..+..++-
T Consensus 191 ~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 191 ESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHHHHHHHHC
Confidence 1111 011 1 111 134456667777766552 22256888888877766 8899999999999986
Q ss_pred cCC
Q 007343 515 KRP 517 (607)
Q Consensus 515 ~~p 517 (607)
-.+
T Consensus 270 ik~ 272 (371)
T PF14664_consen 270 IKP 272 (371)
T ss_pred CCC
Confidence 443
No 130
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=89.29 E-value=12 Score=40.06 Aligned_cols=234 Identities=15% Similarity=0.106 Sum_probs=136.4
Q ss_pred HHHHHHHHHHH--HcCCC----CHHHHHHHHHHhhcCChHhh-----HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhh
Q 007343 97 LALLTINFLQR--DCKDE----DPMIRGLALRSLCSLRVANL-----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI 165 (607)
Q Consensus 97 l~~L~iNtl~k--Dl~~~----n~~ir~lALr~l~~i~~~e~-----~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~ 165 (607)
+..-.+|-+++ |+++. |.+-|+.-+..+-..+++.| -+.+...+...+.+.+...--.++++++.+.|.
T Consensus 266 l~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~ 345 (604)
T KOG4500|consen 266 LLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARR 345 (604)
T ss_pred hHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhcc
Confidence 34455676665 66665 34556666666666666664 233555666777788888889999999999887
Q ss_pred CCCCc--CCCCchHHHHHhhcC----CCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChh
Q 007343 166 SAPTC--IDADFPPTLKHLMLN----DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEW 239 (607)
Q Consensus 166 ~p~~~--~~~~~~~~L~~lLl~----D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w 239 (607)
+...+ -+.++.+.|.++|-. |.|..++.+++++|-.+.-.-+. .-..+.......++..+.-..|-
T Consensus 346 D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n--------ka~~~~aGvteaIL~~lk~~~pp 417 (604)
T KOG4500|consen 346 DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN--------KAHFAPAGVTEAILLQLKLASPP 417 (604)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc--------hhhccccchHHHHHHHHHhcCCc
Confidence 75443 245778888877533 56788899999999877532221 11222222345566666666677
Q ss_pred HHHHHHHHHhccCCCChhHHH------HHHHHHHHHhccCchH-HHHHHHHHHHhhcCC--cchhHHHHHH-HHHHHHHH
Q 007343 240 AQCLVLELVAKYVPLDSNEIF------DIMNLLEDRLQHANGA-VVLSTIKVFLHLTLS--MTDVHQQVYE-RIKAPLLT 309 (607)
Q Consensus 240 ~qi~iL~lL~~~~~~~~~~~~------~il~~l~~~L~~~n~a-Vv~~ai~~i~~l~~~--~~~~~~~~~~-~l~~~L~~ 309 (607)
.+-+++..++......+..+. .+++.+..+=.+...+ |.-|.-|++..+... ..++...+.+ ....-+++
T Consensus 418 v~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vs 497 (604)
T KOG4500|consen 418 VTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVS 497 (604)
T ss_pred chHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHH
Confidence 777777777665433222222 2445555555566644 888888887654422 1121111111 01112334
Q ss_pred HhccCCchhHHHHHHHHHHHHhhCCcccc
Q 007343 310 LVSSGSPEQSYAVLSHLHILVMRAPFIFA 338 (607)
Q Consensus 310 ll~s~~~ni~y~~L~~i~~l~~~~p~~~~ 338 (607)
.+.+..-+++--+|-++..+...++....
T Consensus 498 m~t~~hi~mqnEalVal~~~~~~yl~~~~ 526 (604)
T KOG4500|consen 498 MFTKNHINMQNEALVALLSTESKYLIVIG 526 (604)
T ss_pred HHHHhhHHHhHHHHHHHHHHHHHhccccc
Confidence 44445566666666666666666654433
No 131
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.97 E-value=6.5 Score=41.03 Aligned_cols=139 Identities=19% Similarity=0.245 Sum_probs=94.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHcccCCh-H-----HHHHHHHHhhhhcC-chhhHHHHHHHHHHHHhCCCCchhH----
Q 007343 379 CEYAANVDIPIARESIRAVGKIALQQYDV-N-----AIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWSHDC---- 447 (607)
Q Consensus 379 ~~y~~~~d~~~~~~~i~~I~~la~k~~~~-~-----~~v~~ll~ll~~~~-~~v~~e~i~~i~~i~~~~p~~~~~~---- 447 (607)
..|+.+.+.++|+.+.+.||.|+...|.+ . .....|+..++..+ .++...+...+..++|++|.-+...
T Consensus 130 l~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~ 209 (342)
T KOG2160|consen 130 LGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLN 209 (342)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcC
Confidence 34999999999999999999999999864 1 36777888887554 4677888899999999988644322
Q ss_pred -HHHHHhhhhccCCchHHHHHHHHHHhcccCCCCC-----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCC
Q 007343 448 -IAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (607)
Q Consensus 448 -~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~-----~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p 517 (607)
...+..++...-++...++.++.+++-+-..-.. ....+.....++....+.+++...+++.-++....+
T Consensus 210 G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 210 GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 1234454433335778888888888776532221 233444445555444336677777877777665544
No 132
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=88.80 E-value=13 Score=35.38 Aligned_cols=148 Identities=16% Similarity=0.100 Sum_probs=80.4
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCc-hhhHHHHHHHHHH
Q 007343 358 KLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKD-YVTAEALVLVKDL 436 (607)
Q Consensus 358 kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~-~v~~e~i~~i~~i 436 (607)
++.-+..=.++.|++.+++++.....+.+++....++..|-..|..-|......-.+...+..... .+...++..+..-
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~~ 82 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQEE 82 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 444444444599999999999988877789999999999999988877643333333433443333 4555555444433
Q ss_pred HHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhccc-CCCCC---hHHHHHHHHHhhhc--------CCcHHHHHH
Q 007343 437 LRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYS-QDMQD---APYILESLTENWEE--------EPSAEVRLH 504 (607)
Q Consensus 437 ~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~-~~i~~---~~~~l~~l~~~f~~--------e~~~~vk~~ 504 (607)
+.... .... ... ..-....-..+.+.++||-. ...-+ ..+++..++..... .. .+.=..
T Consensus 83 f~~~~-~~~~----~~~---~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~-ie~~~~ 153 (209)
T PF02854_consen 83 FEERY-SNEE----LEE---NRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEEN-IECLCT 153 (209)
T ss_dssp HHHHT--HHH----HHH---HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHH-HHHHHH
T ss_pred HHHhh-hhhh----HHH---HHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhH-HHHHHH
Confidence 33311 0000 000 01111223455677788843 33323 33455555555444 11 334444
Q ss_pred HHHHHHHHhh
Q 007343 505 LLTAVMKCFF 514 (607)
Q Consensus 505 iLta~~Kl~~ 514 (607)
+|..+.+.+-
T Consensus 154 lL~~~G~~l~ 163 (209)
T PF02854_consen 154 LLKTCGKKLE 163 (209)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 133
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=88.58 E-value=30 Score=39.08 Aligned_cols=175 Identities=15% Similarity=0.110 Sum_probs=114.7
Q ss_pred HcCCCCHHHHHHHHHHhhcCCh----------HhhHHHHHHHHhh-hcCCCChHHHHHHHHHHHHHHh----hCCCCcCC
Q 007343 108 DCKDEDPMIRGLALRSLCSLRV----------ANLVEYLVGPLGL-GLKDNNSYVRTVAVIGVLKLYH----ISAPTCID 172 (607)
Q Consensus 108 Dl~~~n~~ir~lALr~l~~i~~----------~e~~~~l~~~i~~-~L~d~~~~VRK~A~lal~kl~~----~~p~~~~~ 172 (607)
.++...|..|.++++..+-... .++.++....+.. ...+++..++.+|++|+.-+-+ ...+ ..+
T Consensus 339 sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~ 417 (678)
T KOG1293|consen 339 SLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKR 417 (678)
T ss_pred HHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-Ccc
Confidence 5567889999999887655422 2233333333333 3346788999999999876543 2333 334
Q ss_pred CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 007343 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (607)
Q Consensus 173 ~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~ 252 (607)
.+..+.+.++ +.|++.+|..+++.+++.+.-.-... ...++....+..+...+.++++-.....++.|+...
T Consensus 418 ~dv~~plvql-l~dp~~~i~~~~lgai~NlVmefs~~-------kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~ 489 (678)
T KOG1293|consen 418 NDVAQPLVQL-LMDPEIMIMGITLGAICNLVMEFSNL-------KSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM 489 (678)
T ss_pred chhHHHHHHH-hhCcchhHHHHHHHHHHHHHhhcccH-------HHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 5677888887 49999999999999999887543221 112233345777888888999989999999988643
Q ss_pred CCC-hhHHHHH-----HHHHHHHhccCchHHHHHHHHHHHhhcCC
Q 007343 253 PLD-SNEIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (607)
Q Consensus 253 ~~~-~~~~~~i-----l~~l~~~L~~~n~aVv~~ai~~i~~l~~~ 291 (607)
-.. ..+.+.. .+.+..+......+|.-+|.+++-.+...
T Consensus 490 f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 490 FNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred hcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 222 2222222 23445556677788888888888777655
No 134
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=7.3 Score=43.01 Aligned_cols=147 Identities=19% Similarity=0.080 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCCcchhhhhhhhhcc-CCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHH----
Q 007343 45 RELFKKVISYMTIGIDVSAVFGEMVMCSA-TSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGL---- 119 (607)
Q Consensus 45 ~~~l~kli~~~~~G~d~s~lf~~vi~l~~-s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~l---- 119 (607)
-++---=+.+.|+|.--+.+.-++..... ++--.+||-.=+.+.......+|++-=.||-+ +.|.++..|..
T Consensus 463 geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygrqe~add~I~el---l~d~ds~lRy~G~fs 539 (926)
T COG5116 463 GEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGRQEMADDYINEL---LYDKDSILRYNGVFS 539 (926)
T ss_pred hhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhhHHHHHHHHHHH---hcCchHHhhhccHHH
Confidence 34444445566677655555555544333 33334555433333333223445444444444 44555666643
Q ss_pred -HHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHH
Q 007343 120 -ALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSA 198 (607)
Q Consensus 120 -ALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~ 198 (607)
|+-..|. +...++..+. .-..+|.+..|||+|++|+.-++-.+|+.+ ....++|....|+.|++....+
T Consensus 540 ~alAy~GT-gn~~vv~~lL---h~avsD~nDDVrRAAViAlGfvc~~D~~~l------v~tvelLs~shN~hVR~g~Ava 609 (926)
T COG5116 540 LALAYVGT-GNLGVVSTLL---HYAVSDGNDDVRRAAVIALGFVCCDDRDLL------VGTVELLSESHNFHVRAGVAVA 609 (926)
T ss_pred HHHHHhcC-CcchhHhhhh---eeecccCchHHHHHHHHheeeeEecCcchh------hHHHHHhhhccchhhhhhhHHH
Confidence 3322222 2222222222 224577788888888888877766666554 2233333233466666655555
Q ss_pred HHHHHh
Q 007343 199 LQEIWS 204 (607)
Q Consensus 199 L~ei~~ 204 (607)
|.--+.
T Consensus 610 LGiaca 615 (926)
T COG5116 610 LGIACA 615 (926)
T ss_pred hhhhhc
Confidence 554443
No 135
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=88.00 E-value=2.3 Score=36.16 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH---hhcCCChhHHhHHHHHHHHcc
Q 007343 482 APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAA---GLADFHQDVHDRALFYHRLLQ 551 (607)
Q Consensus 482 ~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~---~~~d~~~dvrdRA~~y~~Ll~ 551 (607)
.+.++..++..|.+++ ..||.....++..+.-...+++-+-+..+|.. ...|+|+.||.=|...-|||+
T Consensus 25 l~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 4678888899999998 99999999998888765555555556666653 346899999999999999875
No 136
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.77 E-value=21 Score=38.71 Aligned_cols=188 Identities=15% Similarity=0.235 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh-----HHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHhCC-CCch
Q 007343 373 EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYP-QWSH 445 (607)
Q Consensus 373 ~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-----~~~v~~ll~ll~~~~-~~v~~e~i~~i~~i~~~~p-~~~~ 445 (607)
..+..|.+-..+.|+.=+..+-.-+.++-.++++. ..+.+.+.+++.... -+...|+...+..|+..++ .+.+
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 34555666777778777776666777777777652 245677777777554 3567899999999998755 2333
Q ss_pred hHHHHHHhhhh--ccCC-chHHHHHHHHHHhcccCCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCc-hh
Q 007343 446 DCIAVVGSISS--QNVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ET 520 (607)
Q Consensus 446 ~~~~~l~~l~~--~~~~-~~~~~~~~iwilGEy~~~i~~-~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~-~~ 520 (607)
.-...+.+.+. .... -+.-..-+..++..|.+.-+. +..+++.+++.|.... +.=+...|.-+..+.-..|+ +.
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~-s~Kev~FL~el~~il~~~~~~~f 291 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTN-SQKEVLFLNELEEILEVLPPEEF 291 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC-chhHHHHHHHHHHHHHhcCHHHH
Confidence 22223333331 1111 223345567777777765444 7789999999999887 77788888888888877664 34
Q ss_pred HHHHHH---HHHHhhcCCChhHHhHHHHHH------HHccCCHHHHhhhc
Q 007343 521 QKVLGA---ALAAGLADFHQDVHDRALFYH------RLLQYNVSVAERVV 561 (607)
Q Consensus 521 ~~~~~~---~l~~~~~d~~~dvrdRA~~y~------~Ll~~~~~~~~~i~ 561 (607)
+.+... .+..|..+.+..|-+||..+| .+++.+.+..-.++
T Consensus 292 ~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i 341 (409)
T PF01603_consen 292 QKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVILPII 341 (409)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHH
Confidence 444444 445677899999999999877 44545544333333
No 137
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=87.54 E-value=2.1 Score=49.74 Aligned_cols=125 Identities=13% Similarity=0.155 Sum_probs=91.4
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcCChH--hhHHHHHHHHhhhcCCCChHHHHHHH
Q 007343 80 KKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSLRVA--NLVEYLVGPLGLGLKDNNSYVRTVAV 156 (607)
Q Consensus 80 Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~-~~n~~ir~lALr~l~~i~~~--e~~~~l~~~i~~~L~d~~~~VRK~A~ 156 (607)
+-.|.+.+...-=.+.+++--.+..|.|.|. +....+|..-+-+||.++.. .|++-.+|-|-.+|.|+++.|||-++
T Consensus 948 ra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~ 1027 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTI 1027 (1529)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHH
Confidence 3445554443333466777778889999886 45567777777788988775 48999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc
Q 007343 157 IGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 157 lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~ 206 (607)
+-+.++.+..=-.....=|+..+..+ -|.++.+..-|=..+.++.+..
T Consensus 1028 ilL~rLLq~~~vKw~G~Lf~Rf~l~l--~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1028 ILLARLLQFGIVKWNGELFIRFMLAL--LDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHHHHHHhhhhhhcchhhHHHHHHHH--cccCHHHHHHHHHHHHHHHhhc
Confidence 99999875421111111245666665 3899999999988899988754
No 138
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=87.34 E-value=1.5 Score=46.87 Aligned_cols=117 Identities=15% Similarity=0.192 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhc--CCCcchhhhhhhh-hcc------CCCchhHHHHHHHH--HhhccCCC------------hHH
Q 007343 42 DSKRELFKKVISYMTI--GIDVSAVFGEMVM-CSA------TSDIVLKKMCYLYV--GNYAKVNP------------DLA 98 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~--G~d~s~lf~~vi~-l~~------s~~~~~Krl~YL~l--~~~~~~~~------------el~ 98 (607)
+.++.+-.-++..... |..+...++..++ .++ +.|.. +|=|.+++ +...+... ++.
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~-~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWR-SKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HH-HHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHH-HHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 3455555555544443 3456566665543 332 34444 44444444 33222211 333
Q ss_pred HHHHHHHHHHcC---CCCHHHHHHHHHHhhcCCh---HhhHHHHHHHHhhhcCCCChHHHHHHHHHH
Q 007343 99 LLTINFLQRDCK---DEDPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGV 159 (607)
Q Consensus 99 ~L~iNtl~kDl~---~~n~~ir~lALr~l~~i~~---~e~~~~l~~~i~~~L~d~~~~VRK~A~lal 159 (607)
-...+.+.-||+ +..|+.|+-|++++...+. ++....++|.+.++|.+++.-|+--||.|+
T Consensus 304 ~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 344566666776 6789999999999988754 678888999999999999999999999885
No 139
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=87.03 E-value=14 Score=39.55 Aligned_cols=72 Identities=17% Similarity=0.291 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhccCc-hHHHHHHHHHHHhhcCCcchhHHHHHHH--HHHHHHHHhccCCchhHHHHHHHHHHHHhh
Q 007343 260 FDIMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 260 ~~il~~l~~~L~~~n-~aVv~~ai~~i~~l~~~~~~~~~~~~~~--l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~ 332 (607)
..++..+..+|++++ |.++.-|+.=|.++.-..|..+ .++++ .+..+..|++++|||+||-||.++..++..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk-~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGK-AVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHh-HHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 457888888998876 6666555555554433333221 22322 234467899999999999999999988754
No 140
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=86.99 E-value=46 Score=35.41 Aligned_cols=78 Identities=19% Similarity=0.187 Sum_probs=67.2
Q ss_pred hhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcC
Q 007343 67 EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (607)
Q Consensus 67 ~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~ 145 (607)
.+++... .....||++--++.+|++.-|+++--++|+-..-+.|.+--||--|++-+..++..+...-+.+.+.++|+
T Consensus 29 ~il~~~k-~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 29 GILKAVK-GTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHhh-cchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 3445443 35678999999999999999999999999988888889999999999999999888888888888888887
No 141
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.74 E-value=11 Score=38.84 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=65.7
Q ss_pred HHHHHHHHhhccC-CChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChHh---hHHHHHHHHhhhcCCCChHHHH
Q 007343 81 KMCYLYVGNYAKV-NPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVAN---LVEYLVGPLGLGLKDNNSYVRT 153 (607)
Q Consensus 81 rl~YL~l~~~~~~-~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~e---~~~~l~~~i~~~L~d~~~~VRK 153 (607)
..-|+...+|-.- +|| .+.+...+-|.|.|....+-+|..|..+ +.+. +...++..|.+.+.++..-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5668887777653 344 6778888999999999999887776654 3333 3444566677888999999999
Q ss_pred HHHHHHHHHHhhCCCCc
Q 007343 154 VAVIGVLKLYHISAPTC 170 (607)
Q Consensus 154 ~A~lal~kl~~~~p~~~ 170 (607)
+|++++.-+|..+-+.+
T Consensus 148 aA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999997765554
No 142
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=86.63 E-value=14 Score=40.84 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=11.8
Q ss_pred hHHHHHhhcCCCChhHHHHHHHHHHHH
Q 007343 176 PPTLKHLMLNDPDPQVVANCLSALQEI 202 (607)
Q Consensus 176 ~~~L~~lLl~D~d~~V~~~a~~~L~ei 202 (607)
.+.|..++ .|.+..|+.+|+.++..|
T Consensus 623 ~diL~~L~-~D~~dfVRQ~AmIa~~mI 648 (926)
T COG5116 623 TDILEALM-YDTNDFVRQSAMIAVGMI 648 (926)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHH
Confidence 34444442 444445554444444444
No 143
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=86.13 E-value=27 Score=33.11 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHH
Q 007343 367 NESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVL 432 (607)
Q Consensus 367 n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~ 432 (607)
+++|++.++++|.+...+ +++....+++.|-..+...|....+.-.++..+......+..+++..
T Consensus 12 s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~ 76 (200)
T smart00543 12 SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLER 76 (200)
T ss_pred CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999977654 46788999999999888877643333344444433322344444433
No 144
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=84.79 E-value=34 Score=35.60 Aligned_cols=61 Identities=21% Similarity=0.199 Sum_probs=38.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcC--------ChHhhHHHHHHHHhhhcCCCCh--HHHHHHHHHHHHH
Q 007343 102 INFLQRDCKDEDPMIRGLALRSLCSL--------RVANLVEYLVGPLGLGLKDNNS--YVRTVAVIGVLKL 162 (607)
Q Consensus 102 iNtl~kDl~~~n~~ir~lALr~l~~i--------~~~e~~~~l~~~i~~~L~d~~~--~VRK~A~lal~kl 162 (607)
+..+.|.++....-.+.+|++.++-+ ...++.+.+.|.+++.+.|.+. -+|-.++.|+.-+
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAIC 158 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 34555555555445566666655443 3478899999999999988764 4555555455544
No 145
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.70 E-value=13 Score=43.09 Aligned_cols=175 Identities=14% Similarity=0.113 Sum_probs=102.7
Q ss_pred HHHHHhhcCC-CChhHHHHHHHHHhccC-CCChhH-----HHHHHHHHHHHhccC-chHHHHHHHHHHHhhcCCcchhHH
Q 007343 226 IYYLLNRIKE-FSEWAQCLVLELVAKYV-PLDSNE-----IFDIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQ 297 (607)
Q Consensus 226 ~~~Ll~~l~~-~~~w~qi~iL~lL~~~~-~~~~~~-----~~~il~~l~~~L~~~-n~aVv~~ai~~i~~l~~~~~~~~~ 297 (607)
+.+|+..+.. .+|..|...|.-|.... -.+++. +..++.++..+|++. |.-+++-|+|++.++..-.|.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 6777877754 48999987776555432 222221 245788888999984 678999999998876532111000
Q ss_pred HHHH-HHHHHH-HHHhccCCchhHHHHHHHHHHHHhhCCccc-cc-ccc------eeeeccCCCHhHHHHHHHHHHHccC
Q 007343 298 QVYE-RIKAPL-LTLVSSGSPEQSYAVLSHLHILVMRAPFIF-AS-DYK------HFYCQYNEPSYVKKLKLEMLTAVAN 367 (607)
Q Consensus 298 ~~~~-~l~~~L-~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~-~~-~~~------~f~~~~~d~~~Ik~~kL~iL~~l~n 367 (607)
.+++ ...+.| .+|+.-.--.+.--+|+++..|.+++|..+ +. .+. .|| .+.+.+.+|.+...+|.
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF-----Si~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF-----SIHAQRVALAIAANCCK 323 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 1111 112222 233322334456668899999999998732 21 111 233 46789999999998883
Q ss_pred C------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccC
Q 007343 368 E------SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQY 405 (607)
Q Consensus 368 ~------~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~ 405 (607)
. .-+.+.|.=|..-+...|....+.......++|+.|.
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 3 2344444444444444565555555556666666653
No 146
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.48 E-value=68 Score=35.16 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhh-hcc--CCCchhHHHHHHH-HHhhccCCChH--HHHHHHHHH---HHcCCCCH
Q 007343 44 KRELFKKVISYMTIGIDVSAVFGEMVM-CSA--TSDIVLKKMCYLY-VGNYAKVNPDL--ALLTINFLQ---RDCKDEDP 114 (607)
Q Consensus 44 k~~~l~kli~~~~~G~d~s~lf~~vi~-l~~--s~~~~~Krl~YL~-l~~~~~~~~el--~~L~iNtl~---kDl~~~n~ 114 (607)
...++.++=..|-.-.+.. .+.+.. +.+ ++..+.+|++=.+ +..... .+++ .-+..|.++ .-..||+.
T Consensus 196 h~~g~trlqr~m~~~~~~~--~~~il~q~~ss~ts~~~~~ritd~Af~ael~~-~~~l~~~~lL~s~~~~la~ka~dp~a 272 (533)
T KOG2032|consen 196 HRVGLTRLQRFMACVQDLE--MGKILAQLLSSITSEKENGRITDIAFFAELKR-PKELDKTGLLGSVLLSLANKATDPSA 272 (533)
T ss_pred cHHHHHHHHHHHHhhCCcc--HHHHHhhcccccchhcccchHHHHHHHHHHhC-cccccccccHHHHHHHHHHhccCchh
Confidence 4555555555554322221 233332 222 3334455555543 233322 1221 123444444 44578999
Q ss_pred HHHHHHHHHhhcCChH------hhHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhhCCC-CcCC--CCchHHHHHhhc
Q 007343 115 MIRGLALRSLCSLRVA------NLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAP-TCID--ADFPPTLKHLML 184 (607)
Q Consensus 115 ~ir~lALr~l~~i~~~------e~~~~l~~~i~~~L~d~-~~~VRK~A~lal~kl~~~~p~-~~~~--~~~~~~L~~lLl 184 (607)
.+|++|+|.+++.... .+...+...|..+|-|+ +..|--.|..|+.++-.+-.+ .+.. -+...++..+ .
T Consensus 273 ~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l-~ 351 (533)
T KOG2032|consen 273 KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTL-F 351 (533)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHH-H
Confidence 9999999999997432 34556666677766655 678989999999887654222 1210 1345577787 5
Q ss_pred CCCChhHHHHHHHHHHHHHhhccc
Q 007343 185 NDPDPQVVANCLSALQEIWSLEAS 208 (607)
Q Consensus 185 ~D~d~~V~~~a~~~L~ei~~~~~~ 208 (607)
.|.++.++.+|+.++..+.+-.++
T Consensus 352 ~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 352 DSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred HhcChhhhhhHHHHHHHHHHHcCC
Confidence 899999999999999998876554
No 147
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=84.28 E-value=6.1 Score=44.66 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHhcCCCcch--------------------hhhhhhhhccCCCchhHHHHHHHHHhhccCCCh--HHHH
Q 007343 43 SKRELFKKVISYMTIGIDVSA--------------------VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD--LALL 100 (607)
Q Consensus 43 ~k~~~l~kli~~~~~G~d~s~--------------------lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~e--l~~L 100 (607)
.++..+..++..+-.|...+. +-+.+++++.++|-.+|-+-.-++..|.+.=++ +---
T Consensus 290 ~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~ 369 (690)
T KOG1243|consen 290 IASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQ 369 (690)
T ss_pred HHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcch
Confidence 466677777777766651111 233446788888888777777777777654332 2235
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCC----hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCch
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLR----VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFP 176 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~----~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~ 176 (607)
+...+..-+.|.|+.+|..++++|..+. -..+...+...+.+.-.|.++-+|-+..+|+.|+.....-.+...-..
T Consensus 370 I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~ 449 (690)
T KOG1243|consen 370 IFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLA 449 (690)
T ss_pred hHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccc
Confidence 6688888999999999999999998763 234555666667777778889999999999999865432222222233
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHH
Q 007343 177 PTLKHLMLNDPDPQVVANCLSALQE 201 (607)
Q Consensus 177 ~~L~~lLl~D~d~~V~~~a~~~L~e 201 (607)
....+.+ .|+=+--+.+++.++..
T Consensus 450 ~aftral-kdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 450 SAFTRAL-KDPFVPARKAGVLALAA 473 (690)
T ss_pred hhhhhhh-cCCCCCchhhhhHHHhh
Confidence 3333443 55544446666555544
No 148
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.23 E-value=1.9 Score=37.97 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHhhcCC-----hHhhHHH--HHHHHhhhcCCCChHHHHHHHHHHHHHHh
Q 007343 113 DPMIRGLALRSLCSLR-----VANLVEY--LVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (607)
Q Consensus 113 n~~ir~lALr~l~~i~-----~~e~~~~--l~~~i~~~L~d~~~~VRK~A~lal~kl~~ 164 (607)
||.+.+.|..-||.+. ...+++. .-..|.++++|++|.||+.|+.|+.++..
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5666666666666541 1222222 23457889999999999999999999854
No 149
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=84.21 E-value=0.94 Score=32.10 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=19.1
Q ss_pred HHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHH
Q 007343 159 VLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLS 197 (607)
Q Consensus 159 l~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~ 197 (607)
+..+...+|+....+...+.+...+ .|++++|+-+|+.
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl-~D~s~~VR~aav~ 40 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRL-SDSSPSVREAAVD 40 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 3344445555554444555555553 5555555555543
No 150
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.53 E-value=17 Score=32.61 Aligned_cols=87 Identities=17% Similarity=0.080 Sum_probs=59.7
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChHhh----HH-HHHHHHhhhcCC---CChH
Q 007343 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANL----VE-YLVGPLGLGLKD---NNSY 150 (607)
Q Consensus 82 l~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~e~----~~-~l~~~i~~~L~d---~~~~ 150 (607)
-+-+.++-..+..++..--++..|+|-++++||.++-+||..+-.+ +.+.+ +. .....+.+.+.. .++-
T Consensus 19 ~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~ 98 (133)
T cd03561 19 ALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPK 98 (133)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHH
Confidence 3444555555556777889999999999999999999999877654 22222 22 222245565554 4789
Q ss_pred HHHHHHHHHHHHHhhCCC
Q 007343 151 VRTVAVIGVLKLYHISAP 168 (607)
Q Consensus 151 VRK~A~lal~kl~~~~p~ 168 (607)
||++++..+..-....+.
T Consensus 99 Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 99 VREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999998888776655544
No 151
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=83.42 E-value=3.9 Score=36.08 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=39.2
Q ss_pred HHHHHHHHHhccC-chHHHHHHHHHHHhhcCCcchhHHHHHHH--HHHHHHHHhccCCchhHHHHHHHHHHHHhhC
Q 007343 261 DIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (607)
Q Consensus 261 ~il~~l~~~L~~~-n~aVv~~ai~~i~~l~~~~~~~~~~~~~~--l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~ 333 (607)
.++..|..+|..+ ++.++--|+.-+..+....|..+ .++++ .+..+..|++++++++||-||.++..++..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr-~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGR-NIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGH-HHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHH-HHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 4566666666433 33333333333332222222221 22222 3444567899999999999999999987653
No 152
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=83.37 E-value=61 Score=33.72 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=58.1
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCC-CchhHHHHHHhh---
Q 007343 379 CEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ-WSHDCIAVVGSI--- 454 (607)
Q Consensus 379 ~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~-~~~~~~~~l~~l--- 454 (607)
.+.+...|++....+|.++|.++...... +. +++.+.. ..-.++..+..++.. .++..+..+..+
T Consensus 310 fEmiEmnDpdaieaAiDalGilGSnteGa----dl---llkTgpp----aaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 310 FEMIEMNDPDAIEAAIDALGILGSNTEGA----DL---LLKTGPP----AAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred HHhhhcCCchHHHHHHHHHHhccCCcchh----HH---HhccCCh----HHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 34555678999999999999988654332 11 1112111 011122222222221 111111112211
Q ss_pred h---hccCCchHH--HHHHHHHHhcccCCCCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHh
Q 007343 455 S---SQNVQEPKA--KAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCF 513 (607)
Q Consensus 455 ~---~~~~~~~~~--~~~~iwilGEy~~~i~~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~ 513 (607)
+ .+.+.+..+ +-.+.|.=.---..--+|.++++.+.+ .++++.+++.+.++.-+.
T Consensus 379 lrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilq----QpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 379 LRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQ----QPFPEIHCAALKTFTAIA 438 (524)
T ss_pred ccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHc----CCChhhHHHHHHHHHHHH
Confidence 1 234555333 445666543322222346666665544 345888888887776664
No 153
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=82.95 E-value=63 Score=33.61 Aligned_cols=183 Identities=19% Similarity=0.148 Sum_probs=96.3
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhhC--CCCcCC--CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh-ccc-cchhhh
Q 007343 141 GLGLKDNNSYVRTVAVIGVLKLYHIS--APTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL-EAS-TSEEAS 214 (607)
Q Consensus 141 ~~~L~d~~~~VRK~A~lal~kl~~~~--p~~~~~--~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~-~~~-~~~~~~ 214 (607)
...+.+++.-.|-.|+-++.+++... |+.+.. ..+.+.+.+.+ +-..+.=..-|..++.-++-. .++ ...+
T Consensus 49 Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~l-kkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e-- 125 (309)
T PF05004_consen 49 IDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSL-KKGKSEEQALAARALALLALTLGAGEDSEE-- 125 (309)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHhhhcCCCccHHH--
Confidence 35568888999999999999988643 333311 12344555553 333322222222222222111 111 1111
Q ss_pred hhHhhhcchHHHHHHHhhcCCCC--hhHHHH---HHHHHhccCCCChhHHHHHHHHHHH-----Hhcc----------Cc
Q 007343 215 REREALISKPVIYYLLNRIKEFS--EWAQCL---VLELVAKYVPLDSNEIFDIMNLLED-----RLQH----------AN 274 (607)
Q Consensus 215 ~~~~~li~~~~~~~Ll~~l~~~~--~w~qi~---iL~lL~~~~~~~~~~~~~il~~l~~-----~L~~----------~n 274 (607)
. + ......|.+.+.+.+ +=.... .|-++..++-.++++....++.+.. .++. .+
T Consensus 126 --i---~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 126 --I---F-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred --H---H-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 1 1 112233333333333 223233 4455555666677777754454442 2221 13
Q ss_pred hHHHHHHHHHHHhhcCCcch--hHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC
Q 007343 275 GAVVLSTIKVFLHLTLSMTD--VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (607)
Q Consensus 275 ~aVv~~ai~~i~~l~~~~~~--~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~ 333 (607)
++|+-+|+..-.-+....+. +. ..++...+.|..+|.+++.++|-.|=++|..+....
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 56777777653332222222 33 345556677889999999999999999999886554
No 154
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=82.69 E-value=1e+02 Score=35.75 Aligned_cols=73 Identities=15% Similarity=0.111 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 007343 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (607)
Q Consensus 133 ~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~ 208 (607)
....+..+..+..|+=+.||+.|+-.++-+...-|+.- ..++..+... +.|++--+-+.|..+|..+....|.
T Consensus 302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE--~~LL~~lVNK-lGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE--NNLLVLLVNK-LGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH--HHHHHHHHHh-cCCcchhhhhhHHHHHHHHHhhCCc
Confidence 34445555566678889999999999999998888863 4566666676 4899988999999999999887764
No 155
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=82.54 E-value=40 Score=39.78 Aligned_cols=164 Identities=14% Similarity=0.148 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHHhcCC-Ccchh-hhhh---hhh-ccCCCchhHHHHHHHHHhhccCCC----hHHHHHHHHHHHHcC
Q 007343 41 DDSKRELFKKVISYMTIGI-DVSAV-FGEM---VMC-SATSDIVLKKMCYLYVGNYAKVNP----DLALLTINFLQRDCK 110 (607)
Q Consensus 41 ~~~k~~~l~kli~~~~~G~-d~s~l-f~~v---i~l-~~s~~~~~Krl~YL~l~~~~~~~~----el~~L~iNtl~kDl~ 110 (607)
-..|++++..++..+..-. +.+.. +..+ ++. .-..|...-.+.-.++..++.... ..+..+.|.|..-+.
T Consensus 267 WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lk 346 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLK 346 (815)
T ss_pred hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhh
Confidence 3579999999999887533 33322 2222 222 224455555555555555554333 357788999999999
Q ss_pred CCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCC-CCcCC---CCchHHHHHhhcCC
Q 007343 111 DEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTCID---ADFPPTLKHLMLND 186 (607)
Q Consensus 111 ~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p-~~~~~---~~~~~~L~~lLl~D 186 (607)
+..+.+|-.++.++=.+..---...+.+.|...+.+++|-+|--....+-+.++..+ ..+.. .+..+.+... -+|
T Consensus 347 ekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~-~~D 425 (815)
T KOG1820|consen 347 EKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKH-IND 425 (815)
T ss_pred hccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhh-ccC
Confidence 999999987766655554444455677778889999999999998888889888776 33322 2456666676 489
Q ss_pred CChhHHHHHHHHHHHHHhh
Q 007343 187 PDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 187 ~d~~V~~~a~~~L~ei~~~ 205 (607)
.|.-|+-+|..++..+.+.
T Consensus 426 ~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 426 TDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 9999999999999888654
No 156
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=82.30 E-value=59 Score=32.83 Aligned_cols=124 Identities=16% Similarity=0.190 Sum_probs=81.5
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHH
Q 007343 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL 100 (607)
Q Consensus 21 e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L 100 (607)
++..|++-|.. ++ .--.+..+.++.+-++|-+-+ .--+.+..-.++-..|.=+-.++.+.-. . -
T Consensus 4 ~i~~i~~~L~~------~s--~~l~~r~rALf~Lr~l~~~~~--i~~i~ka~~d~s~llkhe~ay~LgQ~~~--~----~ 67 (289)
T KOG0567|consen 4 EIETIGNILVN------KS--QPLQNRFRALFNLRNLLGPAA--IKAITKAFIDDSALLKHELAYVLGQMQD--E----D 67 (289)
T ss_pred HHHHHHHHHcC------cc--HHHHHHHHHHHhhhccCChHH--HHHHHHhcccchhhhccchhhhhhhhcc--c----h
Confidence 55666666654 11 234567778888888776544 2233444444444455444444544422 2 3
Q ss_pred HHHHHHHHcCC--CCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHh
Q 007343 101 TINFLQRDCKD--EDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (607)
Q Consensus 101 ~iNtl~kDl~~--~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~ 164 (607)
+++.+..-+.| ..|++|--|-.+++.++.++..+.+ .+..+|+-..||-+..+|+.++=.
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~~~~~~~l----~k~~~dp~~~v~ETc~lAi~rle~ 129 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGDPESLEIL----TKYIKDPCKEVRETCELAIKRLEW 129 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcchhhHHHH----HHHhcCCccccchHHHHHHHHHHH
Confidence 56666666655 5699999999999999988776654 455589999999999999998843
No 157
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.50 E-value=65 Score=37.70 Aligned_cols=69 Identities=25% Similarity=0.217 Sum_probs=54.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcCCh------HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 102 INFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 102 iNtl~kDl~~~n~~ir~lALr~l~~i~~------~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
.|--.-.+-|+-+.+||-||+.|..+-. ..+-+-+.......+.|.++||-=.|+-++.-++..+|+.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 3444445678889999999999998732 34455666777788999999999999999999999998876
No 158
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=81.44 E-value=7.4 Score=36.51 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=57.1
Q ss_pred hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC-CCCcCC--CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 129 ~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~-p~~~~~--~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
.......+...+.+++++++++-|-.++.-+....+.+ ++.+.+ ..|+..+...|.+...+.+...|+.++..|...
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 34556677778889999999999988877777777776 555522 358888888865555667788888888888654
No 159
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=80.94 E-value=14 Score=33.71 Aligned_cols=75 Identities=15% Similarity=0.080 Sum_probs=50.3
Q ss_pred HHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC------------ChHhhHHHHHHHHhhhcC-CCChHHH
Q 007343 86 YVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLK-DNNSYVR 152 (607)
Q Consensus 86 ~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i------------~~~e~~~~l~~~i~~~L~-d~~~~VR 152 (607)
.++-..+.+++..--++.+++|-++++||.+.-+||..+-.+ .+.++.+ .+.+++. ..++-||
T Consensus 27 eicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~----~l~~l~~~~~~~~Vk 102 (142)
T cd03569 27 EICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMD----ELKDLIKTTKNEEVR 102 (142)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH----HHHHHHcccCCHHHH
Confidence 333333444455667899999999999999999998766543 2333333 3444443 5788999
Q ss_pred HHHHHHHHHHHh
Q 007343 153 TVAVIGVLKLYH 164 (607)
Q Consensus 153 K~A~lal~kl~~ 164 (607)
++++..+..-..
T Consensus 103 ~kil~li~~W~~ 114 (142)
T cd03569 103 QKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHH
Confidence 998877765543
No 160
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=80.76 E-value=64 Score=35.18 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=87.7
Q ss_pred HHHHHHhhhcCC-CChHHHHHHHHHHHHHHhhCCCCcCCC--CchHHHHHhhcCCCChhHHHHHHHHHHHH-Hhhccccc
Q 007343 135 YLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTCIDA--DFPPTLKHLMLNDPDPQVVANCLSALQEI-WSLEASTS 210 (607)
Q Consensus 135 ~l~~~i~~~L~d-~~~~VRK~A~lal~kl~~~~p~~~~~~--~~~~~L~~lLl~D~d~~V~~~a~~~L~ei-~~~~~~~~ 210 (607)
.+...+...|+| .++..||-|+--+.++.+..|..+.+. -.+..+.+. -.|++..|+..|.-....+ ..+.|
T Consensus 329 ~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea-a~ds~~~v~~~Aeed~~~~las~~P--- 404 (516)
T KOG2956|consen 329 EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA-AKDSQDEVMRVAEEDCLTTLASHLP--- 404 (516)
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH-HhCCchhHHHHHHHHHHHHHHhhCc---
Confidence 444566778888 788888999999999999999877431 123444454 3788888888776554333 33333
Q ss_pred hhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccC-CCChhHHHHHHHHHHH----HhccCchHHHHHHHHHH
Q 007343 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV-PLDSNEIFDIMNLLED----RLQHANGAVVLSTIKVF 285 (607)
Q Consensus 211 ~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~-~~~~~~~~~il~~l~~----~L~~~n~aVv~~ai~~i 285 (607)
.+| +..++..+...++-.-+.+++.+++.. .-+.++...+++-+.+ -..+.+++|.-+||=|+
T Consensus 405 -~~~-----------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCL 472 (516)
T KOG2956|consen 405 -LQC-----------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCL 472 (516)
T ss_pred -hhH-----------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhH
Confidence 122 222333333356666677887777754 3344555555544444 34677888998888887
Q ss_pred Hhhc
Q 007343 286 LHLT 289 (607)
Q Consensus 286 ~~l~ 289 (607)
+.+.
T Consensus 473 Vamv 476 (516)
T KOG2956|consen 473 VAMV 476 (516)
T ss_pred HHHH
Confidence 7654
No 161
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=79.99 E-value=1.7 Score=42.22 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=57.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 102 iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
...+.+=+.|+|+.+|-.|+.++......+-.+.+...+...+.|++.||||...-++..+++.+|+.+
T Consensus 122 ~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 122 LELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 345556668999999999998888877777788888888899999999999999999999999888865
No 162
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.82 E-value=85 Score=32.48 Aligned_cols=60 Identities=23% Similarity=0.164 Sum_probs=41.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHHhhcCChH------hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHh
Q 007343 103 NFLQRDCKDEDPMIRGLALRSLCSLRVA------NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (607)
Q Consensus 103 Ntl~kDl~~~n~~ir~lALr~l~~i~~~------e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~ 164 (607)
+.+..-+.++||.+|..|++.+.++... .--+..++.+.+++.++.| -.-|+.|+.++.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq 71 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ 71 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh
Confidence 3456667788999999998877776443 1134566777788888777 4556666666654
No 163
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=78.41 E-value=14 Score=33.65 Aligned_cols=94 Identities=17% Similarity=0.081 Sum_probs=58.0
Q ss_pred hccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChHhhHHH-----HHHHHhh
Q 007343 71 CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANLVEY-----LVGPLGL 142 (607)
Q Consensus 71 l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~e~~~~-----l~~~i~~ 142 (607)
+.+....+.---..+-++-..+.+++.+--++..|+|-+.++||.+..+||..+-.+ +.+.+-.. +...+.+
T Consensus 13 ATs~~~~~~Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~ 92 (140)
T PF00790_consen 13 ATSESLPSPDWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVK 92 (140)
T ss_dssp HT-TTSSS--HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred HhCcCCCCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHH
Confidence 333333333334445666666677888889999999999999999999998877654 22222222 3344445
Q ss_pred hcCCC--ChH--HHHHHHHHHHHHHh
Q 007343 143 GLKDN--NSY--VRTVAVIGVLKLYH 164 (607)
Q Consensus 143 ~L~d~--~~~--VRK~A~lal~kl~~ 164 (607)
++.++ .+. ||+++.-.+..-..
T Consensus 93 l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 93 LIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHccCCCCchhHHHHHHHHHHHHHHH
Confidence 44332 233 89888766655433
No 164
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=78.35 E-value=2.4 Score=30.04 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=19.6
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHH
Q 007343 135 YLVGPLGLGLKDNNSYVRTVAVIG 158 (607)
Q Consensus 135 ~l~~~i~~~L~d~~~~VRK~A~la 158 (607)
.+...|.+.+.|++|.||++|+-.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 567778888999999999988753
No 165
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=76.96 E-value=47 Score=36.29 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=90.3
Q ss_pred CChHHHHHHHHHHHHHHhh-------------CCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhh
Q 007343 147 NNSYVRTVAVIGVLKLYHI-------------SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (607)
Q Consensus 147 ~~~~VRK~A~lal~kl~~~-------------~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~ 213 (607)
...-||..|+.|+....+. .||.- +.-.+.|..+=++|+++-+++.|+.++..|..-+
T Consensus 8 ~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~--~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs------- 78 (728)
T KOG4535|consen 8 YQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTP--ELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS------- 78 (728)
T ss_pred HHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCC--CCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh-------
Confidence 3455666666666554332 24431 2334445444358999999999999998886432
Q ss_pred hhhHhhhcchHHHHHHHhh-cCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHH-HhccCchHHHHHHHHHHHhhcCC
Q 007343 214 SREREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED-RLQHANGAVVLSTIKVFLHLTLS 291 (607)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~-l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~-~L~~~n~aVv~~ai~~i~~l~~~ 291 (607)
++++..-+.. -..+.||.....-..+..| ..+.. +.....+-|+-.++||+-.+..+
T Consensus 79 ---------k~fls~a~~~~~~~ftpf~v~~a~si~~~~------------r~l~~~l~~e~~~~~~tq~~kcla~lv~~ 137 (728)
T KOG4535|consen 79 ---------KQFLSVAEDTSDHAFTPFSVMIACSIRELH------------RCLLLALVAESSSQTVTQIIKCLANLVSN 137 (728)
T ss_pred ---------HHHHHHHhccCCcCCCchHHHHHHHHHHHH------------HHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 1111111211 1246676554333333222 12222 22345667888899988776554
Q ss_pred cc--hhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC
Q 007343 292 MT--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (607)
Q Consensus 292 ~~--~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~ 333 (607)
.+ .++...+.+..+-+..++.++|+|++.-+|-.+..++..+
T Consensus 138 ~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 138 APYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 33 2343444444444556777899999999999888887643
No 166
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.91 E-value=1.7e+02 Score=34.92 Aligned_cols=181 Identities=16% Similarity=0.160 Sum_probs=98.5
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhH-HHHH-HHHHHHHHhhccccchhhhhhHhh
Q 007343 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQV-VANC-LSALQEIWSLEASTSEEASREREA 219 (607)
Q Consensus 142 ~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V-~~~a-~~~L~ei~~~~~~~~~~~~~~~~~ 219 (607)
++--|++|-+||+|=.-+-.+.+ .++|...+.+..-+|..+.. +.+| +..=+.|.+.=+... .|.+..
T Consensus 11 ~~T~d~d~~~R~~AE~~L~q~~K-------~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~---~~g~~~ 80 (1010)
T KOG1991|consen 11 RATIDSDAKERKAAEQQLNQLEK-------QPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE---APGRPF 80 (1010)
T ss_pred HHhcCCChHHHHHHHHHHHHhhc-------CCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC---CCCCcC
Confidence 33456679999999888877764 26777777776556766654 4444 444344433211110 000001
Q ss_pred hcc---hHHH-HHHHhhcCCCChhHHHHHHHHHhc-cCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcc-
Q 007343 220 LIS---KPVI-YYLLNRIKEFSEWAQCLVLELVAK-YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT- 293 (607)
Q Consensus 220 li~---~~~~-~~Ll~~l~~~~~w~qi~iL~lL~~-~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~- 293 (607)
-++ ++.+ ..++..+....+-.++.+-.++.. ....-|+..-.+.+.+...|++.+.+.++.|.-|+..+.....
T Consensus 81 ~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~ 160 (1010)
T KOG1991|consen 81 GIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEW 160 (1010)
T ss_pred CCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhh
Confidence 111 1111 234444444455566655555533 3333445566788999999999999999999998877653211
Q ss_pred -------hh---HHHHHHHHHHHHHHHhccC---CchhHHHHHHHHHHHHhh
Q 007343 294 -------DV---HQQVYERIKAPLLTLVSSG---SPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 294 -------~~---~~~~~~~l~~~L~~ll~s~---~~ni~y~~L~~i~~l~~~ 332 (607)
.+ ....+..+-+....+++.. ..++.+++|+.....++.
T Consensus 161 k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~ 212 (1010)
T KOG1991|consen 161 KKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY 212 (1010)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 11 1222333333334555433 345566666655555543
No 167
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.50 E-value=2.1e+02 Score=35.71 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHH
Q 007343 149 SYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYY 228 (607)
Q Consensus 149 ~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~ 228 (607)
..++.+----++++|+..|+.+ -+.++.|..-|+ -.+..++.-|+.++..+.........+. +.+.+..
T Consensus 236 ~~~~~~~he~i~~L~~~~p~ll--~~vip~l~~eL~-se~~~~Rl~a~~lvg~~~~~~~~~l~~~--------~~~~~~~ 304 (1266)
T KOG1525|consen 236 SSLKIKYHELILELWRIAPQLL--LAVIPQLEFELL-SEQEEVRLKAVKLVGRMFSDKDSQLSET--------YDDLWSA 304 (1266)
T ss_pred cchhhHHHHHHHHHHHhhHHHH--HHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhcchhhhccc--------chHHHHH
Confidence 3456667778889999999988 578888887754 4577899999999999976533211111 2345566
Q ss_pred HHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHH
Q 007343 229 LLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLL 308 (607)
Q Consensus 229 Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~ 308 (607)
.++++.+-++-..+..++....+.-.+|.-.......+.-......+.|.....-++..++.. .....+...+-..+.
T Consensus 305 fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~--~~~l~~~~~ll~~~~ 382 (1266)
T KOG1525|consen 305 FLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVM--KFKLVYIPLLLKLVA 382 (1266)
T ss_pred HHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehh--HhhhhhhHHHHHHHH
Confidence 677777777777777777666554444443333322222222233333332222222111110 010010000111222
Q ss_pred HHhccCCchhHHHHHHHHHHHHhh
Q 007343 309 TLVSSGSPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 309 ~ll~s~~~ni~y~~L~~i~~l~~~ 332 (607)
..+.++-.+||--|++.+.++-.+
T Consensus 383 eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 383 ERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHH
Confidence 234467889999888888877664
No 168
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=75.86 E-value=1.2e+02 Score=32.80 Aligned_cols=171 Identities=19% Similarity=0.226 Sum_probs=98.2
Q ss_pred CHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHcccCCh---HHHHHHHHHhh-hhcCchhh---HHHHHH-HHH-HHHh
Q 007343 370 NTYEIVTELCEYAANVD-IPIARESIRAVGKIALQQYDV---NAIVDRLLQFL-EMEKDYVT---AEALVL-VKD-LLRK 439 (607)
Q Consensus 370 N~~~Iv~eL~~y~~~~d-~~~~~~~i~~I~~la~k~~~~---~~~v~~ll~ll-~~~~~~v~---~e~i~~-i~~-i~~~ 439 (607)
+..++++++.+.+.+.+ +..+..+.+.++.++-|+++. ..+++.+.+-+ ....+... -+++.. .+- ++|+
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 67789999998887754 556666788899999998763 34555555555 11111122 222222 233 4555
Q ss_pred CCCCchhHHHHHHhhhhccCCchH----HHHHHHHHHhcccCCCCC--------------hHHHHHHHHHhhhcCCcHHH
Q 007343 440 YPQWSHDCIAVVGSISSQNVQEPK----AKAALIWMLGEYSQDMQD--------------APYILESLTENWEEEPSAEV 501 (607)
Q Consensus 440 ~p~~~~~~~~~l~~l~~~~~~~~~----~~~~~iwilGEy~~~i~~--------------~~~~l~~l~~~f~~e~~~~v 501 (607)
+|...+ .+.+++ +.+.+++ +-.++--++|+..+.... =..++..+.+.|...+ .+.
T Consensus 266 ~~~~~~----~~~~L~-~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~-~~~ 339 (415)
T PF12460_consen 266 HPLATE----LLDKLL-ELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEAD-DEI 339 (415)
T ss_pred CchHHH----HHHHHH-HHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcC-hhh
Confidence 665322 233332 2222232 233345566664433221 1245667778888777 779
Q ss_pred HHHHHHHHHHHhhcCCch-----hHHHHHHHHHHhhcCCChhHHhHHHHHH
Q 007343 502 RLHLLTAVMKCFFKRPPE-----TQKVLGAALAAGLADFHQDVHDRALFYH 547 (607)
Q Consensus 502 k~~iLta~~Kl~~~~p~~-----~~~~~~~~l~~~~~d~~~dvrdRA~~y~ 547 (607)
|...|+|++-+.-+-|.+ ...++.-+++ +..-.|.+++--+..-.
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlq-sL~~~~~~v~~s~L~tL 389 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQ-SLSLPDADVLLSSLETL 389 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence 999999999999888853 2333333333 34446777777666533
No 169
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.16 E-value=1.8e+02 Score=34.20 Aligned_cols=148 Identities=18% Similarity=0.118 Sum_probs=81.4
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhccccchh
Q 007343 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP-DPQVVANCLSALQEIWSLEASTSEE 212 (607)
Q Consensus 134 ~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~-d~~V~~~a~~~L~ei~~~~~~~~~~ 212 (607)
+.+...+.+.+ +++|.|||.|=-++-..-. ++++.-.+..++.++. |+..+.+|...+-.-++++=....+
T Consensus 5 e~l~~~l~qTl-~pdps~rk~aEr~L~~~e~-------q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~ 76 (960)
T KOG1992|consen 5 ETLANYLLQTL-SPDPSVRKPAERALRSLEG-------QQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAED 76 (960)
T ss_pred HHHHHHHHhcC-CCCCccCchHHHHHHHhcc-------CCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCC
Confidence 44555555543 4678999999877755421 2566667777764554 7888888877777766643111111
Q ss_pred hhhhHhhhcchHHHHHHH-hhcCCCChhHHHHHHHHHhccCCCCh-hHHHHHHHHHHHHhccC----chHHHHHHHHHHH
Q 007343 213 ASREREALISKPVIYYLL-NRIKEFSEWAQCLVLELVAKYVPLDS-NEIFDIMNLLEDRLQHA----NGAVVLSTIKVFL 286 (607)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll-~~l~~~~~w~qi~iL~lL~~~~~~~~-~~~~~il~~l~~~L~~~----n~aVv~~ai~~i~ 286 (607)
. |....--++..+..++ ...-...+-.|+.+=+.+...+..|- +..-++++-+...+++. +.+|+-.|=..|=
T Consensus 77 ~-~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFk 155 (960)
T KOG1992|consen 77 S-PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFK 155 (960)
T ss_pred C-ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 0 0000000112233332 22223445688888888877665443 34456777777777753 3555544444554
Q ss_pred hhcC
Q 007343 287 HLTL 290 (607)
Q Consensus 287 ~l~~ 290 (607)
.+..
T Consensus 156 r~R~ 159 (960)
T KOG1992|consen 156 RYRP 159 (960)
T ss_pred hcCc
Confidence 5543
No 170
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=74.95 E-value=80 Score=30.16 Aligned_cols=131 Identities=15% Similarity=0.123 Sum_probs=87.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHccc-CChHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHH
Q 007343 373 EIVTELCEYAANVDIPIARESIRAVGKIALQQ-YDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVV 451 (607)
Q Consensus 373 ~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~-~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l 451 (607)
.=++.+++.+.+.+...+..+++-++.+...- -+...|+.+++.|.....+.+...+....+.+..|||+.-+.
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~----- 82 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVES----- 82 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHH-----
Confidence 34555666777889999999998888776542 223359999999999888888888888899999999875321
Q ss_pred HhhhhccCCchHHHHHHHHHHhcccCCCC----ChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCC
Q 007343 452 GSISSQNVQEPKAKAALIWMLGEYSQDMQ----DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (607)
Q Consensus 452 ~~l~~~~~~~~~~~~~~iwilGEy~~~i~----~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p 517 (607)
++. ..++.+.-+-..-+++... .....+..++.... .. ...|-.++++++|.|-..+
T Consensus 83 -~~~------~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~-r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 83 -RYS------EGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SN-RKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred -HHH------HHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cc-cHhHHHHHHHHHHHHHhhc
Confidence 110 1233333333333333221 14556777776655 44 6778888999999987654
No 171
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=74.93 E-value=69 Score=33.65 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcC---ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHh
Q 007343 97 LALLTINFLQRDCK-DEDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (607)
Q Consensus 97 l~~L~iNtl~kDl~-~~n~~ir~lALr~l~~i---~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~ 164 (607)
++--+++.+..=+. ..|+-..+.++.+++.= .+.++-+.+...+++++.|+.+-|||.-+.+++..+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 44444444444332 36777777777776652 1356677888899999999999999999999999886
No 172
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=74.88 E-value=46 Score=29.91 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChHhh-----HHHHHHHHhhhcCCCC--
Q 007343 79 LKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANL-----VEYLVGPLGLGLKDNN-- 148 (607)
Q Consensus 79 ~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~e~-----~~~l~~~i~~~L~d~~-- 148 (607)
.---+-+.++-..+.+++..--++..++|-++++||.+.-.||+.+-.+ +.+.+ ...+...+.+.+.++.
T Consensus 16 ~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~ 95 (133)
T smart00288 16 EDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPL 95 (133)
T ss_pred cCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCc
Confidence 3334446667777777888889999999999999999999999887664 12222 2224445566665543
Q ss_pred hHHHHHHHHHHHHHHhhC
Q 007343 149 SYVRTVAVIGVLKLYHIS 166 (607)
Q Consensus 149 ~~VRK~A~lal~kl~~~~ 166 (607)
+.||++++..+..-....
T Consensus 96 ~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 96 PLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 449998887776655433
No 173
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=74.87 E-value=14 Score=39.52 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=90.8
Q ss_pred CCCchhHHHHHHHHHhhccCCCh--------HHHHHHHHHHHHcCCCCHHHHHHHHHHh---hcC--ChHhhHHHHHHHH
Q 007343 74 TSDIVLKKMCYLYVGNYAKVNPD--------LALLTINFLQRDCKDEDPMIRGLALRSL---CSL--RVANLVEYLVGPL 140 (607)
Q Consensus 74 s~~~~~Krl~YL~l~~~~~~~~e--------l~~L~iNtl~kDl~~~n~~ir~lALr~l---~~i--~~~e~~~~l~~~i 140 (607)
+++-+++-.||=.+..+...... +-.+++=++.+|. ++...|--||+.+ ..+ +..++-..+...|
T Consensus 36 ~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~--~~~~ER~QALkliR~~l~~~~~~~~~~~~vvral 113 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN--KNDVEREQALKLIRAFLEIKKGPKEIPRGVVRAL 113 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC--CChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 44478888888877666543222 2345566777765 4578888887665 444 5556777888888
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 007343 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (607)
Q Consensus 141 ~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~ 204 (607)
..+..+++.-.|..|+..+..+.-.+|+.+...+-+..|.+.+ .|+...+..+.+.++..+..
T Consensus 114 vaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l-~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 114 VAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRAL-IDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHH-HhccHhHHHHHHHHHHHHhC
Confidence 8888999999999999999999999999886666667777764 56655555555666666553
No 174
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=74.83 E-value=5.8 Score=27.50 Aligned_cols=28 Identities=25% Similarity=0.124 Sum_probs=23.2
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 007343 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (607)
Q Consensus 136 l~~~i~~~L~d~~~~VRK~A~lal~kl~ 163 (607)
.+|.+.+++.++++.||+.|+-|+..+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677788888999999999999987763
No 175
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=74.52 E-value=59 Score=32.44 Aligned_cols=146 Identities=16% Similarity=0.223 Sum_probs=78.0
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCCCCc-CC----C------CchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc-ccc
Q 007343 143 GLKDNNSYVRTVAVIGVLKLYHISAPTC-ID----A------DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA-STS 210 (607)
Q Consensus 143 ~L~d~~~~VRK~A~lal~kl~~~~p~~~-~~----~------~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~-~~~ 210 (607)
++.|++|.|-|.|+.|...+|+.-=+.+ .. . .+-+.+..+ ..+.+++|..+|+..+..+..... +..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~-~~~~~~gvk~~~iKFle~vIl~qs~~~~ 79 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSL-WDSENPGVKLAAIKFLERVILVQSPGSS 79 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHG-GGSSSHHHHHHHHHHHHHHHHHTS---T
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhcCCCCC
Confidence 4789999999999999999987521111 00 1 134455565 367799999999998888754321 100
Q ss_pred hhhhh-hHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCc--hHHHHHHHHHHHh
Q 007343 211 EEASR-EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHAN--GAVVLSTIKVFLH 287 (607)
Q Consensus 211 ~~~~~-~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n--~aVv~~ai~~i~~ 287 (607)
....+ ....-+ . +..++.-.|.+...-|+ .|+..+++.+...+++.. +.++..+++++..
T Consensus 80 ~~~~~~~~~~d~------S-L~~vp~~Hp~l~~~~Le----------~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~ 142 (239)
T PF11935_consen 80 DSPPRRGSPNDF------S-LSSVPPNHPLLNPQQLE----------AEANGLLDRLLDVLQSPHISSPLLTAIINSLSN 142 (239)
T ss_dssp TS---GGGTTS---------GGGS-TT-SSS-HHHHH----------HHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHH
T ss_pred CCccccccccCC------C-HHHcCCCCCcCCHHHHH----------HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 00000 000000 0 12222233333333222 477788999888888654 6677777777665
Q ss_pred hcCCcchhHHHHHHHHHHHHHHH
Q 007343 288 LTLSMTDVHQQVYERIKAPLLTL 310 (607)
Q Consensus 288 l~~~~~~~~~~~~~~l~~~L~~l 310 (607)
+...-+. ...++.+.|.+|
T Consensus 143 Iak~RP~----~~~~Il~~ll~~ 161 (239)
T PF11935_consen 143 IAKQRPQ----FMSRILPALLSF 161 (239)
T ss_dssp HHHHSGG----GHHHHHHHHHHH
T ss_pred HHHHhhH----HHHHHHHHHHhc
Confidence 5543332 234455554444
No 176
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=74.31 E-value=40 Score=32.02 Aligned_cols=66 Identities=23% Similarity=0.194 Sum_probs=51.5
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 138 ~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
+.+.+-..++++++||.|..++.+.+....+ . ..+.+.+..+ ..|++..|.-+.--+|.++...+|
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~-~--~~~l~~~~~~-~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETD-F--DLLLEIIERL-LHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhccc-H--HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhCH
Confidence 4566777899999999999999998876222 1 3467777776 588889998888889999987754
No 177
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=74.07 E-value=6.9 Score=37.42 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=56.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHhhcCChH-hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 103 NFLQRDCKDEDPMIRGLALRSLCSLRVA-NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 103 Ntl~kDl~~~n~~ir~lALr~l~~i~~~-e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
..+.+=..|+|+.+|-.|+-++...... .-.+.+...+..++.|++.||||...-++..+++.+|+.+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v 176 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERV 176 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 3455566789999999998888775443 5677788888889999999999999999999999988865
No 178
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=73.93 E-value=31 Score=31.59 Aligned_cols=81 Identities=16% Similarity=0.042 Sum_probs=56.5
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChHhh-----HHHHHHHHhhhcCC-CChHHHHH
Q 007343 84 YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANL-----VEYLVGPLGLGLKD-NNSYVRTV 154 (607)
Q Consensus 84 YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~e~-----~~~l~~~i~~~L~d-~~~~VRK~ 154 (607)
.+-++-..+.+++..--++.+|+|-++++||.+.-+||..+-.+ +...+ ...+...+.+++.+ .++-||.+
T Consensus 21 il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~k 100 (144)
T cd03568 21 ILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEK 100 (144)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHH
Confidence 34455555556667778999999999999999999998877553 12111 23344456666666 78899999
Q ss_pred HHHHHHHHHh
Q 007343 155 AVIGVLKLYH 164 (607)
Q Consensus 155 A~lal~kl~~ 164 (607)
++..+.....
T Consensus 101 il~li~~W~~ 110 (144)
T cd03568 101 LREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHH
Confidence 8877766543
No 179
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=72.44 E-value=1.1e+02 Score=30.47 Aligned_cols=159 Identities=20% Similarity=0.213 Sum_probs=93.1
Q ss_pred CCCCHHHHHHHHHHhhcCChH--hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhc---
Q 007343 110 KDEDPMIRGLALRSLCSLRVA--NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML--- 184 (607)
Q Consensus 110 ~~~n~~ir~lALr~l~~i~~~--e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl--- 184 (607)
+.++|......|+++..+... ...+.+...+..+...++..++-.+..-+.++++.++..+ +.|+.+|.
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~~ 84 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLLI 84 (234)
T ss_pred CCCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHHH
Confidence 345666666666666665432 3444555555555555666666677777777887766554 33333221
Q ss_pred ---------CCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc-CCCChhHHHHHHHHHhccCCC
Q 007343 185 ---------NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-KEFSEWAQCLVLELVAKYVPL 254 (607)
Q Consensus 185 ---------~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l-~~~~~w~qi~iL~lL~~~~~~ 254 (607)
.+....+..+....+.+++...|+... +.+..+-..+ ...++=.+...++.++.+++.
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~------------~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV------------DLLPLLSGCLNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH------------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 123344555555678888877765221 1233333334 678888999999999999866
Q ss_pred ChhHHHHHHHHHHHHhccC-chHHHHHHHHHHH
Q 007343 255 DSNEIFDIMNLLEDRLQHA-NGAVVLSTIKVFL 286 (607)
Q Consensus 255 ~~~~~~~il~~l~~~L~~~-n~aVv~~ai~~i~ 286 (607)
+--+......++.+.+... .|.|.-+-.+.+.
T Consensus 153 ~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 153 EVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred hhccHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 5444555667777777544 3555554444443
No 180
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.46 E-value=29 Score=41.57 Aligned_cols=109 Identities=22% Similarity=0.231 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHHHc-----CCCCHHHHHHHHHHhhcC--ChHh--hHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHh
Q 007343 94 NPDLALLTINFLQRDC-----KDEDPMIRGLALRSLCSL--RVAN--LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (607)
Q Consensus 94 ~~el~~L~iNtl~kDl-----~~~n~~ir~lALr~l~~i--~~~e--~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~ 164 (607)
+.|..--.+|.+-+.+ .|-.|.||+-.+..||-= ..|+ +-......+-..|+|++.-||++.+-++.++|.
T Consensus 276 ~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 276 QQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHh
Confidence 3444445667766665 678999999999999852 1122 234445567789999999999999999999998
Q ss_pred hCCCCcCC----CCchHHHHHhhcCCCChhHHHHHHHHHHHH
Q 007343 165 ISAPTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (607)
Q Consensus 165 ~~p~~~~~----~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei 202 (607)
.+...-.- ..|-+++.++...|-+++|.+.++..+...
T Consensus 356 ~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 356 KDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 74332110 235566666644678889988887766554
No 181
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=71.44 E-value=54 Score=34.02 Aligned_cols=140 Identities=13% Similarity=0.175 Sum_probs=67.0
Q ss_pred CCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCCh---h-----
Q 007343 186 DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS---N----- 257 (607)
Q Consensus 186 D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~---~----- 257 (607)
.++..++...+..+.++...+|....-... ....-....+..+++.+...+++.+.....+|+......+ .
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~~-~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFLE-LAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHHH-HHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-hcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 367788999999999999887743211000 0000001135556666666799999888888876533222 1
Q ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHH-HHHHHHHHHHh-------ccCCchhHHHHHHHHH
Q 007343 258 EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLV-------SSGSPEQSYAVLSHLH 327 (607)
Q Consensus 258 ~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~-~~l~~~L~~ll-------~s~~~ni~y~~L~~i~ 327 (607)
....+++.+...+++.+..+...|++++..+... +..+..+. ....++|..++ +..+..++|-++-.+=
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 1223344444444455565667777777766533 33322222 23334455555 1234445566655544
No 182
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=70.96 E-value=1.4e+02 Score=31.39 Aligned_cols=230 Identities=13% Similarity=0.161 Sum_probs=106.0
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC-------CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccc
Q 007343 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI-------DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (607)
Q Consensus 138 ~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~-------~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~ 210 (607)
..+...|..-+-..||-++.-...+.+..++.-. ...+.+.+..++..=+++.+...+=..|-|+.+.+.
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~--- 155 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES--- 155 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH---
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH---
Confidence 3344555556666777777666666665433210 011122222222222355555666666777766432
Q ss_pred hhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH--------HHHHHHHHHHhccCchHHHHHHH
Q 007343 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI--------FDIMNLLEDRLQHANGAVVLSTI 282 (607)
Q Consensus 211 ~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~--------~~il~~l~~~L~~~n~aVv~~ai 282 (607)
.+ . .++..+.+.++.+-+..++==...-.+..+..+.-..+..+ ..+......+|++.|.-....++
T Consensus 156 --l~--~-~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 156 --LA--K-IILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp --HH--H-HHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred --HH--H-HHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 11 1 11222334444443332211112222222221111112111 13445666788899999999999
Q ss_pred HHHHhhcCCcch--hHHHHHHH--HHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHH
Q 007343 283 KVFLHLTLSMTD--VHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLK 358 (607)
Q Consensus 283 ~~i~~l~~~~~~--~~~~~~~~--l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~k 358 (607)
+++..+-...+. +....+.. --..+..+|++++.++|+-|...+...+.+ | +-|.-|+
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN-p--------------~K~~~I~--- 292 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN-P--------------NKPPPIV--- 292 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH--S--------------S-BHHHH---
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC-C--------------CCChHHH---
Confidence 998876533222 11111110 001234577788889999888877766654 2 2232222
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHhhcC--CHHHHHH---HHHHHHH
Q 007343 359 LEMLTAVANESNTYEIVTELCEYAANV--DIPIARE---SIRAVGK 399 (607)
Q Consensus 359 L~iL~~l~n~~N~~~Iv~eL~~y~~~~--d~~~~~~---~i~~I~~ 399 (607)
+||.. |=+.++.=|..+..+. |++|..+ +|+.|..
T Consensus 293 -~iL~~-----Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~~ 332 (335)
T PF08569_consen 293 -DILIK-----NREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIES 332 (335)
T ss_dssp -HHHHH-----THHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHHT
T ss_pred -HHHHH-----HHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHHh
Confidence 23332 5566666555565554 6667655 5555543
No 183
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=70.66 E-value=1.4e+02 Score=31.00 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=40.3
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCC--CCchHHHHHhhc---CCCChhHHHHHHHHHHHHHhh
Q 007343 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLML---NDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 139 ~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~--~~~~~~L~~lLl---~D~d~~V~~~a~~~L~ei~~~ 205 (607)
+..+.+..+++++.-+|+..+..+....+..-.. .++++.+.+.+. +.++..+...|+.+|.++.+.
T Consensus 109 ~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~ 180 (312)
T PF03224_consen 109 PFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS 180 (312)
T ss_dssp HHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc
Confidence 3345788889999999999999998877665421 134444444431 234556677788888888754
No 184
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=70.42 E-value=1.6e+02 Score=31.56 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=83.6
Q ss_pred cCCCchhHHHHHHHHHhhccCC---ChH------HHHHHHHHHHHcCC-------CCHHHHHHHHHHhhcC-ChHhh---
Q 007343 73 ATSDIVLKKMCYLYVGNYAKVN---PDL------ALLTINFLQRDCKD-------EDPMIRGLALRSLCSL-RVANL--- 132 (607)
Q Consensus 73 ~s~~~~~Krl~YL~l~~~~~~~---~el------~~L~iNtl~kDl~~-------~n~~ir~lALr~l~~i-~~~e~--- 132 (607)
++.+-..|.=+|+.+....+.. |+. +-+.+..+++|+.+ .+.-+...|||++|.+ ..+++
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 4556666777888777666432 222 44678889999987 4667888999999986 33443
Q ss_pred -----HHHHHHHHhhhcCCCC-hHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhc--CC--CChhHHHHHHHHHHHH
Q 007343 133 -----VEYLVGPLGLGLKDNN-SYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML--ND--PDPQVVANCLSALQEI 202 (607)
Q Consensus 133 -----~~~l~~~i~~~L~d~~-~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl--~D--~d~~V~~~a~~~L~ei 202 (607)
...++......+.+++ |=.--++.+.+++.-+..|..+. .+.+..+...+. .+ +..++...++.++..+
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~-~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMT-SDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccc-hhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 3334444445565554 43445566666666666666553 455555555431 22 3456777788888777
Q ss_pred Hhhccc
Q 007343 203 WSLEAS 208 (607)
Q Consensus 203 ~~~~~~ 208 (607)
....|.
T Consensus 162 l~q~p~ 167 (372)
T PF12231_consen 162 LSQFPQ 167 (372)
T ss_pred HHHHHH
Confidence 766553
No 185
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=69.54 E-value=1.8e+02 Score=32.04 Aligned_cols=382 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHhhcC---ChHhhHHHHHHHHhhhcCCCCh-HHHHHHHHHHHHHHhhCCC--CcCCCCchHHHHHhhcCCCChh
Q 007343 117 RGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNS-YVRTVAVIGVLKLYHISAP--TCIDADFPPTLKHLMLNDPDPQ 190 (607)
Q Consensus 117 r~lALr~l~~i---~~~e~~~~l~~~i~~~L~d~~~-~VRK~A~lal~kl~~~~p~--~~~~~~~~~~L~~lLl~D~d~~ 190 (607)
|.-|++.++.. ...+-++.+-...+.++.+..| .+|+.|..-+..+.+..-+ ...+..|...+..- -.|+|-.
T Consensus 7 R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~-~~~~d~~ 85 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDP-SNDDDFD 85 (464)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcC-CCchhHH
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc-----------------------CCCChhHHHHHHHH
Q 007343 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-----------------------KEFSEWAQCLVLEL 247 (607)
Q Consensus 191 V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l-----------------------~~~~~w~qi~iL~l 247 (607)
-+..|+.+|.+=+++=.+...+ +.+-+...|-... .+.++=....++++
T Consensus 86 ~~l~aL~~LT~~Grdi~~~~~~--------i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~ 157 (464)
T PF11864_consen 86 LRLEALIALTDNGRDIDFFEYE--------IGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQF 157 (464)
T ss_pred HHHHHHHHHHcCCcCchhcccc--------hHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHH
Q ss_pred Hhcc-----CCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHH
Q 007343 248 VAKY-----VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAV 322 (607)
Q Consensus 248 L~~~-----~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~ 322 (607)
+... ..-++++...+++.+..+-..++....++++--++........+-...+..+...|.+..+.. +..-.+
T Consensus 158 l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~ 235 (464)
T PF11864_consen 158 LVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPS 235 (464)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhH
Q ss_pred HHHHHHHH-hhCCcccccccceee----eccCCCHhHHHHHHHHHHHccCCC--------CHHH--HHHHHHHHhhcCCH
Q 007343 323 LSHLHILV-MRAPFIFASDYKHFY----CQYNEPSYVKKLKLEMLTAVANES--------NTYE--IVTELCEYAANVDI 387 (607)
Q Consensus 323 L~~i~~l~-~~~p~~~~~~~~~f~----~~~~d~~~Ik~~kL~iL~~l~n~~--------N~~~--Iv~eL~~y~~~~d~ 387 (607)
.+.|..++ .+.....-..+-.+. -...++..+-+-++.++-.+.-.. +... ++..|..-+...+.
T Consensus 236 w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~ 315 (464)
T PF11864_consen 236 WRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSP 315 (464)
T ss_pred HHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCC
Q ss_pred HHHHHHHHHHHHHH-cccCC----hHH--HHHHHHHhhhhcCchhhHH--------HHHHHHHHHHh---------CCCC
Q 007343 388 PIARESIRAVGKIA-LQQYD----VNA--IVDRLLQFLEMEKDYVTAE--------ALVLVKDLLRK---------YPQW 443 (607)
Q Consensus 388 ~~~~~~i~~I~~la-~k~~~----~~~--~v~~ll~ll~~~~~~v~~e--------~i~~i~~i~~~---------~p~~ 443 (607)
-+.-+++..+..+- .+|.. ..| .++.+..+++....+-..+ +...+..++.. +...
T Consensus 316 ~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~ 395 (464)
T PF11864_consen 316 RVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGP 395 (464)
T ss_pred eehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCcc
Q ss_pred chhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCCh--HHHHHHHHHhhh-cCCcHHHHHHHHHHHHHH
Q 007343 444 SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA--PYILESLTENWE-EEPSAEVRLHLLTAVMKC 512 (607)
Q Consensus 444 ~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~--~~~l~~l~~~f~-~e~~~~vk~~iLta~~Kl 512 (607)
++.+..++.+.. +.+.+..+...+ .--|-.-...++ .+-+..+++.|. .+.++.||...|..+..+
T Consensus 396 ~~~~~~f~~~~~-~~lp~s~~~~vl--~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 396 KDKLFNFFERVH-SYLPDSSALLVL--FYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred HHHHHHHHHHHh-ccCCHHHHHHHH--HHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
No 186
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=69.04 E-value=17 Score=40.55 Aligned_cols=127 Identities=15% Similarity=0.115 Sum_probs=88.0
Q ss_pred cCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCC--CHHHHHHHHHHh---hcC---ChHhhHHHHHHHH----
Q 007343 73 ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDE--DPMIRGLALRSL---CSL---RVANLVEYLVGPL---- 140 (607)
Q Consensus 73 ~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~--n~~ir~lALr~l---~~i---~~~e~~~~l~~~i---- 140 (607)
.++.+..|=|.||.=+..+....+-.+ ..+...+.++ |.-.|.+|+.++ ..+ ..+.++..+-+.|
T Consensus 295 a~~~lq~kIL~~L~kS~~Aa~~~~~~~---~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 295 ASPRLQEKILSLLSKSVIAATSFPNIL---QIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred CCHHHHHHHHHHHHHhHHHHhCCccHH---HHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Confidence 355667777788777766654443322 2334466677 788999999999 443 3344444444444
Q ss_pred hhhcC--------CCChHHHHHHHHHHHHHHhhCCCCc-CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 141 GLGLK--------DNNSYVRTVAVIGVLKLYHISAPTC-IDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 141 ~~~L~--------d~~~~VRK~A~lal~kl~~~~p~~~-~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
.+.+. ..+...|..|..|++.+.+..|..+ .+-+++..|-+.| .++++.|+.+.-.+|..+.
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL-~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSL-EDESPEVRVSIQEALSSLA 442 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHh-hCcchHHHHHHHHHHHHHH
Confidence 34442 2357899999999999999999998 4556777888875 8888999988777777664
No 187
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.71 E-value=2.6e+02 Score=33.47 Aligned_cols=95 Identities=21% Similarity=0.180 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHhhcCCh------H--hhH-HHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC-CCCcCCCCchHHHHHh
Q 007343 113 DPMIRGLALRSLCSLRV------A--NLV-EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHL 182 (607)
Q Consensus 113 n~~ir~lALr~l~~i~~------~--e~~-~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~-p~~~~~~~~~~~L~~l 182 (607)
|+.-.--|||.+|++.. + +.. -.+.+.|...++++.-|.|-+|+-.+.++...+ ++-..-.+..+...++
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~ 510 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNC 510 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 45555578999998742 1 223 334566777788999999999999999987432 2211113456666677
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 183 MLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 183 Ll~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
|.+|.+.-|+..|..||......++
T Consensus 511 l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 511 LLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred hccCCcCchhhHHHHHHHHHHhcch
Confidence 6568888898888888888776554
No 188
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=68.56 E-value=49 Score=38.94 Aligned_cols=218 Identities=17% Similarity=0.163 Sum_probs=109.5
Q ss_pred hhhhccCC---CchhHHHHHHHHHhhccC-------------C---ChHHHHHHHHHHHHcCC-CCHHHHHHHHHHhhcC
Q 007343 68 MVMCSATS---DIVLKKMCYLYVGNYAKV-------------N---PDLALLTINFLQRDCKD-EDPMIRGLALRSLCSL 127 (607)
Q Consensus 68 vi~l~~s~---~~~~Krl~YL~l~~~~~~-------------~---~el~~L~iNtl~kDl~~-~n~~ir~lALr~l~~i 127 (607)
++++.+++ ...-++.+|.++..++.. . ++.++-+-=-+-|.+-. .+|..-++|.+.|..+
T Consensus 745 ~vkl~s~~~~k~~~~~~~~~~~~~~l~~~~~vs~~~v~~y~gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~klld~L 824 (1030)
T KOG1967|consen 745 IVKLSSTNALKTTANLKLKEEAIRQLFSAKFVSEKKVENYCGSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLLDLL 824 (1030)
T ss_pred ccccccccchhhhhhhhcccHHHHHHHHHHhhhhHhHhhccCCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHHHhc
Confidence 34544433 344566666666655431 1 22333333344454433 4567778888888888
Q ss_pred ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHH-HhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc
Q 007343 128 RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL-YHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 128 ~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl-~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~ 206 (607)
..|++-.......--.+.|.+ -++|.+-.|-.|+ |+ +.+- .+..+.+.+.. .-.+.++..+-+.+|..+..+-
T Consensus 825 s~~~~g~~aa~~fsiim~D~~-~~~~r~~~a~~riLyk---QRfF-~~ivP~l~~~~-~t~~~~~K~~yl~~LshVl~~v 898 (1030)
T KOG1967|consen 825 SGPSTGSPAAKLFSIIMSDSN-PLLKRKGHAEPRILYK---QRFF-CDIVPILVSKF-ETAPGSQKHNYLEALSHVLTNV 898 (1030)
T ss_pred CCccccchHHHhhHhhhccCh-HHhhhccccchhHHHH---HHHH-HhhHHHHHHHh-ccCCccchhHHHHHHHHHHhcC
Confidence 888776655544433444444 4555555554432 32 1110 23455555543 3233444555444554443322
Q ss_pred cccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 007343 207 ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFL 286 (607)
Q Consensus 207 ~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~ 286 (607)
|. |+ ..| +..++++.+..-|.-.+..|..++.+++-
T Consensus 899 P~--------------------------------~v--------llp----~~~~LlPLLLq~Ls~~D~~v~vstl~~i~ 934 (1030)
T KOG1967|consen 899 PK--------------------------------QV--------LLP----QFPMLLPLLLQALSMPDVIVRVSTLRTIP 934 (1030)
T ss_pred CH--------------------------------Hh--------hcc----chhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence 21 00 001 11134444444444455555555555543
Q ss_pred hhcCCcchhHHHHHHHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhCCc
Q 007343 287 HLTLSMTDVHQQVYERIKAPLLTLVSSGSPE---QSYAVLSHLHILVMRAPF 335 (607)
Q Consensus 287 ~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~n---i~y~~L~~i~~l~~~~p~ 335 (607)
-+....+.+..+-++.+.+.+..+-++.+.| +|-.||+.+..+..+-|.
T Consensus 935 ~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~ 986 (1030)
T KOG1967|consen 935 MLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT 986 (1030)
T ss_pred HHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC
Confidence 3322222233333455666666554444433 789999999998887775
No 189
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=68.18 E-value=2.6e+02 Score=33.27 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=45.3
Q ss_pred cCCCHhHHHH--HHHHHHHcc-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC
Q 007343 348 YNEPSYVKKL--KLEMLTAVA-NESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD 406 (607)
Q Consensus 348 ~~d~~~Ik~~--kL~iL~~l~-n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~ 406 (607)
.+||..|++. |..+...++ ++.-....+.-|.+-+.+.++..+.++...+-.|+.+|..
T Consensus 227 k~D~~~I~reDL~~sLr~al~stP~Fa~~~lp~LlEKL~as~~~~K~DsL~~L~ec~~~ygv 288 (1030)
T KOG1967|consen 227 KDDTITIRREDLKASLRSALVSTPSFAPFALPLLLEKLNASDPSAKVDSLDTLNECCLKYGV 288 (1030)
T ss_pred CCCcccccHHHHHHHHHHHHhcCccchhhHHHHHHHHhccccchhhhhHHHHHHHHHHHhCc
Confidence 5788778855 444444544 5666777888888999999999999999999999999863
No 190
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=67.08 E-value=1.9e+02 Score=33.32 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=52.5
Q ss_pred hHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 132 ~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
+...+..-+......+++.+|+.+.--+.++....|+.. -...+.++|.+.+.+++.+.++..+-+..
T Consensus 439 ~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~----rf~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 439 FMQFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEET----RFKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHh----HHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 333333334445678999999999999999999999853 46777787767788999999998887765
No 191
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=65.54 E-value=1.6e+02 Score=29.85 Aligned_cols=203 Identities=18% Similarity=0.201 Sum_probs=108.3
Q ss_pred CCChhHHHHHHHHHhccC---C---CChhHHHHHHHHHHHHhccCchHHH---HHHHHHHHhhcCCcchhHHHHHHHHHH
Q 007343 235 EFSEWAQCLVLELVAKYV---P---LDSNEIFDIMNLLEDRLQHANGAVV---LSTIKVFLHLTLSMTDVHQQVYERIKA 305 (607)
Q Consensus 235 ~~~~w~qi~iL~lL~~~~---~---~~~~~~~~il~~l~~~L~~~n~aVv---~~ai~~i~~l~~~~~~~~~~~~~~l~~ 305 (607)
+.++-.+.+.+++|+... | -+.+++.-+++....+|. ....+ +.+...++.+.....+....+++.+..
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~ 87 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVKMKNFSPESAVKILRSLFQ 87 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHH
Confidence 344445555555555431 2 244566667777777774 22223 444444444433222211222222211
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHhhCCccccccccee---e---e-ccCCCHhHHHHHHHHHHHccCCCCHHHHHHHH
Q 007343 306 PLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF---Y---C-QYNEPSYVKKLKLEMLTAVANESNTYEIVTEL 378 (607)
Q Consensus 306 ~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f---~---~-~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL 378 (607)
-. -..+-....||.+++.+..++.+++......-..| | + -..||. -=....+++..+...-.....+++|
T Consensus 88 ~~--~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPR-nLl~~F~l~~~i~~~~~~~~~~e~l 164 (262)
T PF14500_consen 88 NV--DVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPR-NLLLSFKLLKVILQEFDISEFAEDL 164 (262)
T ss_pred hC--ChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHH-HHHHHHHHHHHHHHhcccchhHHHH
Confidence 00 01223456799999999999888754321111111 1 1 246665 3334555555554443345555555
Q ss_pred H----HHhhc------CCH-H-HHHHHHHHHHHHHcccCC-hHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCC
Q 007343 379 C----EYAAN------VDI-P-IARESIRAVGKIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ 442 (607)
Q Consensus 379 ~----~y~~~------~d~-~-~~~~~i~~I~~la~k~~~-~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~ 442 (607)
. .|.+- .|+ . -+.++..++..|-...|. +.+++..+++=|..+...+..++...+..-+.+|+.
T Consensus 165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 4 34321 132 1 234566666666554454 368899999999988878889998888888888874
No 192
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=64.82 E-value=11 Score=23.68 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=19.7
Q ss_pred HHHHHHHHhhcCChHhhHHHHHHHH
Q 007343 116 IRGLALRSLCSLRVANLVEYLVGPL 140 (607)
Q Consensus 116 ir~lALr~l~~i~~~e~~~~l~~~i 140 (607)
||.-|.++||.+++++-++.+...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6889999999999988777776554
No 193
>PF05536 Neurochondrin: Neurochondrin
Probab=64.17 E-value=2.5e+02 Score=31.70 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=92.6
Q ss_pred ChHHHHHHHHHHHHHHhhCCCCcCCCCc---hHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchH
Q 007343 148 NSYVRTVAVIGVLKLYHISAPTCIDADF---PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (607)
Q Consensus 148 ~~~VRK~A~lal~kl~~~~p~~~~~~~~---~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~ 224 (607)
++..-+.-+++++..|-.+|+...++++ ++.|.+.+.+.++..++.-|+..|..+.....| ...++...
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G--------~~aLl~~g 140 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG--------AKALLESG 140 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh--------HHHHHhcC
Confidence 5677788888888888777777655555 445555543344447888888888888754433 11223223
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhc----cCC----CChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcc---
Q 007343 225 VIYYLLNRIKEFSEWAQCLVLELVAK----YVP----LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT--- 293 (607)
Q Consensus 225 ~~~~Ll~~l~~~~~w~qi~iL~lL~~----~~~----~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~--- 293 (607)
.+..|+..+.. .+..+-..+.++.. ..+ ..+.....++..+....+.....--++....+-.+-...+
T Consensus 141 ~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~ 219 (543)
T PF05536_consen 141 AVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILP 219 (543)
T ss_pred CHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccc
Confidence 34555555433 33334333333332 221 1222333444455555544443444444444443322211
Q ss_pred ---hhHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHHHhhC
Q 007343 294 ---DVHQQVYERIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRA 333 (607)
Q Consensus 294 ---~~~~~~~~~l~~~L~~ll~s~-~~ni~y~~L~~i~~l~~~~ 333 (607)
.....-...+..-+..+++++ .+.-|-.++.....+++..
T Consensus 220 ~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 220 LESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred cccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 011222333444455566543 5667888888888887764
No 194
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=63.25 E-value=89 Score=29.86 Aligned_cols=113 Identities=21% Similarity=0.227 Sum_probs=64.0
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCC-hh----HHHHHHHHHHHHHhhccccchhhhhhH
Q 007343 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPD-PQ----VVANCLSALQEIWSLEASTSEEASRER 217 (607)
Q Consensus 143 ~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d-~~----V~~~a~~~L~ei~~~~~~~~~~~~~~~ 217 (607)
++.|+++-||-.|+-++..+.... -+.+... .|.. +. =.+.. +..+.
T Consensus 48 il~Dp~~kvR~aA~~~l~~lL~gs---------k~~L~~A--e~~~~~~~sFtslS~t---La~~i-------------- 99 (182)
T PF13251_consen 48 ILKDPSPKVRAAAASALAALLEGS---------KPFLAQA--EESKGPSGSFTSLSST---LASMI-------------- 99 (182)
T ss_pred HHcCCchhHHHHHHHHHHHHHHcc---------HHHHHHH--HhcCCCCCCcccHHHH---HHHHH--------------
Confidence 568999999999999999987542 2333332 2221 11 01111 11111
Q ss_pred hhhcchHHHHHHHhhc-CCCChhHHHHHHHHHhccCC------CChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhh
Q 007343 218 EALISKPVIYYLLNRI-KEFSEWAQCLVLELVAKYVP------LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (607)
Q Consensus 218 ~~li~~~~~~~Ll~~l-~~~~~w~qi~iL~lL~~~~~------~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l 288 (607)
.+.-+.|+..+ .+.++-....+++.++.... -.++....++..+.+++.|.++.|...+.-++-.+
T Consensus 100 -----~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l 172 (182)
T PF13251_consen 100 -----MELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGAL 172 (182)
T ss_pred -----HHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 01122233333 24455566666776665432 34456677888888999998888877766655443
No 195
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=62.77 E-value=33 Score=39.05 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=92.0
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhc----CChHhhHHHHHHHHhhhcCCCChHHHHHHHH
Q 007343 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS----LRVANLVEYLVGPLGLGLKDNNSYVRTVAVI 157 (607)
Q Consensus 82 l~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~----i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~l 157 (607)
+.+++-.-..-...|.-.-++..+.|-+.+++..+|..=|+-+-. +..+.+-..+.|.+..++.|+||.+|-.++-
T Consensus 312 ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlk 391 (690)
T KOG1243|consen 312 LTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLK 391 (690)
T ss_pred hhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHH
Confidence 444444333333444555678889999999999999998887655 3456678889999999999999999999998
Q ss_pred HHHHHHh-hCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 158 GVLKLYH-ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 158 al~kl~~-~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
++.-+.. +++..+ ..+....+.++ ..|++++.+.+....+..|...
T Consensus 392 sm~~La~kL~~~~L-n~Ellr~~ar~-q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 392 SMAVLAPKLSKRNL-NGELLRYLARL-QPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred HHHHHHhhhchhhh-cHHHHHHHHhh-CccccCcccccceeeecccccc
Confidence 8887754 344433 35677778776 6799999999999888888654
No 196
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.68 E-value=3.2e+02 Score=32.34 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=52.1
Q ss_pred HHHhhhcCCCChHHHHHHHHHHHHHHh--hCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 007343 138 GPLGLGLKDNNSYVRTVAVIGVLKLYH--ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (607)
Q Consensus 138 ~~i~~~L~d~~~~VRK~A~lal~kl~~--~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~ 208 (607)
......+.|+-+-+|--|+..+.++++ .....+.....+....+. +.|.|+-|-.||+..+..++...|+
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcch
Confidence 334456788889999999999999997 222333334667777887 4999999999999977777766553
No 197
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=62.61 E-value=2.8e+02 Score=31.67 Aligned_cols=106 Identities=13% Similarity=0.183 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHH--HHHhhhh-ccCCchHHHHHHHHHHhcccCCCCC--h
Q 007343 408 NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIA--VVGSISS-QNVQEPKAKAALIWMLGEYSQDMQD--A 482 (607)
Q Consensus 408 ~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~--~l~~l~~-~~~~~~~~~~~~iwilGEy~~~i~~--~ 482 (607)
....+-|++++..+...|..-+.-++++++-++.+.+...+. .+..+.. -.-.++..++...|++-.-....++ -
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 345666777775555556666667788888888877654321 2222221 1223666788888888763333322 2
Q ss_pred H----HHHHHHHHhhhcCCcHHHHHHHHHHHHHHh
Q 007343 483 P----YILESLTENWEEEPSAEVRLHLLTAVMKCF 513 (607)
Q Consensus 483 ~----~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~ 513 (607)
. .+.-.++..|...++..||.+.+..+=-+-
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 2 222333344444444777777776654443
No 198
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=62.21 E-value=3.6e+02 Score=32.74 Aligned_cols=242 Identities=19% Similarity=0.107 Sum_probs=128.5
Q ss_pred hccCCCchhHHHHHHHHHhhccC-CChHHHHHHHHHHH---HcCCC-CHHHHHHHHHHhhc--CChHhhHHHHHHHHhhh
Q 007343 71 CSATSDIVLKKMCYLYVGNYAKV-NPDLALLTINFLQR---DCKDE-DPMIRGLALRSLCS--LRVANLVEYLVGPLGLG 143 (607)
Q Consensus 71 l~~s~~~~~Krl~YL~l~~~~~~-~~el~~L~iNtl~k---Dl~~~-n~~ir~lALr~l~~--i~~~e~~~~l~~~i~~~ 143 (607)
.++..|..++--.--.+...... -++++.-++-+... -..++ .-+--++||--|+. +-.|...+.+.|.|.++
T Consensus 349 ~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~ka 428 (1133)
T KOG1943|consen 349 ALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKA 428 (1133)
T ss_pred hccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34455555433222222222222 25666666655544 12222 23455666666655 44578888999998888
Q ss_pred cCC--------CChHHHHHHHHHHHHHHhhC-CCCcCCCCchHHHHHhh----cCCCChhHHHHHHHHHHHHHhhccccc
Q 007343 144 LKD--------NNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHLM----LNDPDPQVVANCLSALQEIWSLEASTS 210 (607)
Q Consensus 144 L~d--------~~~~VRK~A~lal~kl~~~~-p~~~~~~~~~~~L~~lL----l~D~d~~V~~~a~~~L~ei~~~~~~~~ 210 (607)
+.= ....||=+|+..+-.+++-+ |+.+ ..+...|...| +.|++..++.+|.+|+.|..-+.+..
T Consensus 429 L~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l--~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~- 505 (1133)
T KOG1943|consen 429 LHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDL--KPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF- 505 (1133)
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhcCChhhh--hHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC-
Confidence 752 24589999999888888765 5544 22444333322 47999999999999999987554432
Q ss_pred hhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHH-HhccCchHHHHHHHHHHHhhc
Q 007343 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED-RLQHANGAVVLSTIKVFLHLT 289 (607)
Q Consensus 211 ~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~-~L~~~n~aVv~~ai~~i~~l~ 289 (607)
|....+++..-+..+-+ ..+-|.++.. .++. -+.-...+++.+.. .+.|=...+...++..+-.+.
T Consensus 506 ----p~Gi~Lis~~dy~sV~~---rsNcy~~l~~--~ia~----~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls 572 (1133)
T KOG1943|consen 506 ----PHGISLISTIDYFSVTN---RSNCYLDLCV--SIAE----FSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLS 572 (1133)
T ss_pred ----CCchhhhhhcchhhhhh---hhhHHHHHhH--HHHh----hhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 11111221100111111 1233544221 1111 12223344444433 366777888888888887765
Q ss_pred CCcch-hHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhh
Q 007343 290 LSMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 290 ~~~~~-~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~ 332 (607)
...+. +...++ ++|+.-..+++.+.|....-....++..
T Consensus 573 ~~~pk~~a~~~L----~~lld~~ls~~~~~r~g~~la~~ev~~~ 612 (1133)
T KOG1943|consen 573 LTEPKYLADYVL----PPLLDSTLSKDASMRHGVFLAAGEVIGA 612 (1133)
T ss_pred HhhHHhhcccch----hhhhhhhcCCChHHhhhhHHHHHHHHHH
Confidence 43332 111222 2222223347888887666666555543
No 199
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.05 E-value=2.2e+02 Score=33.30 Aligned_cols=130 Identities=19% Similarity=0.294 Sum_probs=89.8
Q ss_pred CCchhHHHHHHHHHHHHhhC--Ccc-----------------cc---cccceeee-ccCCCHhHHHHHHHHHHHccC--C
Q 007343 314 GSPEQSYAVLSHLHILVMRA--PFI-----------------FA---SDYKHFYC-QYNEPSYVKKLKLEMLTAVAN--E 368 (607)
Q Consensus 314 ~~~ni~y~~L~~i~~l~~~~--p~~-----------------~~---~~~~~f~~-~~~d~~~Ik~~kL~iL~~l~n--~ 368 (607)
.|+++--++|+.+..+..+. |.+ |. .++..+.+ ...++.+||+-++.++.++-. .
T Consensus 75 ~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 75 MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 47777777888887777654 111 11 11112222 245678999999999999743 3
Q ss_pred CCHHHH-------HHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh------HHHHHHHHHhhhhcC----chhhHHHHH
Q 007343 369 SNTYEI-------VTELCEYAANVDIPIARESIRAVGKIALQQYDV------NAIVDRLLQFLEMEK----DYVTAEALV 431 (607)
Q Consensus 369 ~N~~~I-------v~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~------~~~v~~ll~ll~~~~----~~v~~e~i~ 431 (607)
.-++++ +..|+.-++|.-+-+|.++|.-+..+....+.+ ...++.|+++++..| .-|+.+|..
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ 234 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLI 234 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 334443 345666777777778888999888888776652 357899999998754 479999999
Q ss_pred HHHHHHHhCCCC
Q 007343 432 LVKDLLRKYPQW 443 (607)
Q Consensus 432 ~i~~i~~~~p~~ 443 (607)
.+-++++++..-
T Consensus 235 ll~NLLK~N~SN 246 (970)
T KOG0946|consen 235 LLNNLLKNNISN 246 (970)
T ss_pred HHHHHHhhCcch
Confidence 999999876543
No 200
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=61.99 E-value=17 Score=34.71 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=37.8
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhh
Q 007343 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM 183 (607)
Q Consensus 131 e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lL 183 (607)
.+++.++.+++++|+..++.|.++++.++-++...++-.- +.+.+...++|
T Consensus 76 PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG--~aLvPyyrqLL 126 (183)
T PF10274_consen 76 PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG--EALVPYYRQLL 126 (183)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHH
Confidence 4678888899999999999999999988888865544432 45666666653
No 201
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.05 E-value=1e+02 Score=28.17 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=59.1
Q ss_pred CChhHHH-HHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcc-hhHHHHHH-HHHHHHHHHhc
Q 007343 236 FSEWAQC-LVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVHQQVYE-RIKAPLLTLVS 312 (607)
Q Consensus 236 ~~~w~qi-~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~-~~~~~~~~-~l~~~L~~ll~ 312 (607)
-.+|..+ .|-+.+.. ++....+.+..+..+++|.|+.|.+-|..++-.+..+-. .++.++.. ...+-|..+++
T Consensus 15 ~~dw~~il~icD~I~~----~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~ 90 (144)
T cd03568 15 SENWGLILDVCDKVKS----DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIN 90 (144)
T ss_pred CcCHHHHHHHHHHHhc----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhc
Confidence 3567553 35555553 233455678888899999999999999988766554433 24444432 33444556665
Q ss_pred c-CCchhHHHHHHHHHHHHhhC
Q 007343 313 S-GSPEQSYAVLSHLHILVMRA 333 (607)
Q Consensus 313 s-~~~ni~y~~L~~i~~l~~~~ 333 (607)
. .+++++--+|..+.......
T Consensus 91 ~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 91 DRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh
Confidence 5 56777777777766655443
No 202
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=59.46 E-value=1e+02 Score=28.60 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 007343 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (607)
Q Consensus 298 ~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~ 331 (607)
..+.++.+.++..+.+.++..+-..+..+..++.
T Consensus 124 ~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 124 PYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3566778888887876667888778877777664
No 203
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=59.33 E-value=36 Score=29.18 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhcCCchhHHH------HHHHHHHhhcC-CChhHHhHHHHHHHHccCCHHHHhhhcCC
Q 007343 501 VRLHLLTAVMKCFFKRPPETQKV------LGAALAAGLAD-FHQDVHDRALFYHRLLQYNVSVAERVVNP 563 (607)
Q Consensus 501 vk~~iLta~~Kl~~~~p~~~~~~------~~~~l~~~~~d-~~~dvrdRA~~y~~Ll~~~~~~~~~i~~~ 563 (607)
.|..++..++-+..++| +.|+. +.-+|+.|..| .||-+|++|.+-.|-|-.+.++.+++|..
T Consensus 2 ~K~~lvrlianl~~~~~-~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNK-EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCH-HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35667777777777776 45554 44588888877 59999999999888777777777777743
No 204
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.19 E-value=83 Score=37.74 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhcCCCcch-------hhhhhhhhccC-CCchhHHHHHHHHHhhccCCChH-----HHHHHHHHHHHc
Q 007343 43 SKRELFKKVISYMTIGIDVSA-------VFGEMVMCSAT-SDIVLKKMCYLYVGNYAKVNPDL-----ALLTINFLQRDC 109 (607)
Q Consensus 43 ~k~~~l~kli~~~~~G~d~s~-------lf~~vi~l~~s-~~~~~Krl~YL~l~~~~~~~~el-----~~L~iNtl~kDl 109 (607)
+.|..---+++-+..|+...+ +...+...+.+ +..-+|+-+.+.+..++...++- -.++.--+..-+
T Consensus 572 EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L 651 (1387)
T KOG1517|consen 572 EQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL 651 (1387)
T ss_pred HHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHh
Confidence 344444467777777765322 23333455555 35778999999999998766653 235566677788
Q ss_pred CCCCHHHHHHHHHHhhcCChH------h---------------h-HHHHHH----HHhhhcCCCChHHHHHHHHHHHHHH
Q 007343 110 KDEDPMIRGLALRSLCSLRVA------N---------------L-VEYLVG----PLGLGLKDNNSYVRTVAVIGVLKLY 163 (607)
Q Consensus 110 ~~~n~~ir~lALr~l~~i~~~------e---------------~-~~~l~~----~i~~~L~d~~~~VRK~A~lal~kl~ 163 (607)
.|+-|.||+.|+-++|.+-.. | + +|..+. .+...++|.+|.||+.-+.++.++-
T Consensus 652 sD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 652 SDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred cCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 899999999999888875321 0 1 233333 4555677788888887777777654
No 205
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=59.14 E-value=3.7e+02 Score=32.55 Aligned_cols=104 Identities=12% Similarity=0.138 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcccCCC--CC--hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCc---hhHHHHHHHHHHhhcCC
Q 007343 463 KAKAALIWMLGEYSQDM--QD--APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP---ETQKVLGAALAAGLADF 535 (607)
Q Consensus 463 ~~~~~~iwilGEy~~~i--~~--~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~---~~~~~~~~~l~~~~~d~ 535 (607)
+.+-.++-+|||-+..- +. .-..|+.++..|.--. .++=+.+|..+.+++.++|+ .++.++..+... ..+.
T Consensus 520 etk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hn-IEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rk-K~a~ 597 (1128)
T KOG2051|consen 520 ETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHN-IEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRK-KRAS 597 (1128)
T ss_pred hhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhccccc-HHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHH-HHHh
Confidence 34555678889977532 21 3456777788888777 99999999999999999984 234444444322 3455
Q ss_pred ChhHHhHHHHHHHHccCCHHHHhhhcCCCCCCc
Q 007343 536 HQDVHDRALFYHRLLQYNVSVAERVVNPPKQAV 568 (607)
Q Consensus 536 ~~dvrdRA~~y~~Ll~~~~~~~~~i~~~~~p~~ 568 (607)
..|-|+-+..=..+-...|....+++.-.+||-
T Consensus 598 ~lDsr~~~~iENay~~~~PPe~~~~~~k~r~p~ 630 (1128)
T KOG2051|consen 598 ALDSRQATLIENAYYLCNPPERSKRLSKKRPPM 630 (1128)
T ss_pred hhchHHHHHHHHhHHhccChhhcccccccCCcH
Confidence 666666666544444444444444555556664
No 206
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=58.60 E-value=1e+02 Score=27.98 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHhhcCCChhHHhHHHH-HHHHccC
Q 007343 499 AEVRLHLLTAVMKCFFKRPPET---QKVLGAALAAGLADFHQDVHDRALF-YHRLLQY 552 (607)
Q Consensus 499 ~~vk~~iLta~~Kl~~~~p~~~---~~~~~~~l~~~~~d~~~dvrdRA~~-y~~Ll~~ 552 (607)
......+|..+.+.|.++|+-+ -..+.++...|....++++++.|.. |..-|+.
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~YL~~ 124 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKYLQL 124 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHHCCS
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 4456688999999999999633 3456667777777779999999988 5565654
No 207
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=58.49 E-value=50 Score=37.48 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHH
Q 007343 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVA 193 (607)
Q Consensus 114 ~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~ 193 (607)
+-+-|.|+-+||.=-..+| ....+-..+.=.+|.+||..-+|+.=++-.+|+. +..+.|.+. ..|.|+.|..
T Consensus 622 ~avLgiAliAMgeeig~eM---~lR~f~h~l~yge~~iRravPLal~llsvSNPq~----~vlDtLsk~-shd~D~eva~ 693 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGSEM---VLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV----NVLDTLSKF-SHDGDLEVAM 693 (878)
T ss_pred chhhhhhhhhhhhhhhhHH---HHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc----hHHHHHHHh-ccCcchHHHH
Confidence 5677888888886444444 4445556667789999999999999998888885 588999998 5999999999
Q ss_pred HHHHHHHHHH
Q 007343 194 NCLSALQEIW 203 (607)
Q Consensus 194 ~a~~~L~ei~ 203 (607)
||+.++.-|.
T Consensus 694 naIfamGLiG 703 (878)
T KOG2005|consen 694 NAIFAMGLIG 703 (878)
T ss_pred HHHHHhcccc
Confidence 9999998775
No 208
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=58.28 E-value=14 Score=32.83 Aligned_cols=41 Identities=15% Similarity=0.035 Sum_probs=32.4
Q ss_pred hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC
Q 007343 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (607)
Q Consensus 129 ~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~ 169 (607)
++.-+..+...+.+-|+|++|+|+.||+-.+-.+.+..++.
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~ 72 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD 72 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence 34556677778888889999999999999998888766543
No 209
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=58.09 E-value=2.4e+02 Score=29.58 Aligned_cols=233 Identities=14% Similarity=0.170 Sum_probs=111.5
Q ss_pred hHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCh---HhhHHHHHHH-------HhhhcCCC-
Q 007343 79 LKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV---ANLVEYLVGP-------LGLGLKDN- 147 (607)
Q Consensus 79 ~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~---~e~~~~l~~~-------i~~~L~d~- 147 (607)
.+..|--.+..+...+ ...+.+.|++..+.+..-|||-|..|.. ...+..+... +.+++...
T Consensus 42 ~~~~g~~l~~~iL~~~-------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~ 114 (330)
T PF11707_consen 42 FQSYGLELIRSILQNH-------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRK 114 (330)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhcccc
Confidence 5555555555444332 4566777777777777788777776633 4455544432 22232111
Q ss_pred ----C--------hHHHHHHHHHHHHHHhhCCCCc-----CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccc
Q 007343 148 ----N--------SYVRTVAVIGVLKLYHISAPTC-----IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (607)
Q Consensus 148 ----~--------~~VRK~A~lal~kl~~~~p~~~-----~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~ 210 (607)
. +.||..++.-++.+....+..+ ...+....+-+-| .+.++.++...+..|.+-.-.++.
T Consensus 115 ~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l-~~D~~~~v~~iL~~l~~~Vl~~~~-- 191 (330)
T PF11707_consen 115 KEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGL-RKDPPETVILILETLKDKVLKDSS-- 191 (330)
T ss_pred ccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcc-cCCCHHHHHHHHHHHHHHhccCCC--
Confidence 1 3899988888888776544322 1223344444443 333455566555555542222211
Q ss_pred hhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhH-HHHHHHHHHHHhccCchHHHHHHHHHHHh--
Q 007343 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE-IFDIMNLLEDRLQHANGAVVLSTIKVFLH-- 287 (607)
Q Consensus 211 ~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~-~~~il~~l~~~L~~~n~aVv~~ai~~i~~-- 287 (607)
+.+ -. +..-+++|.-.++..+...-.+.+... +..+-+.+..+-.+...+|.+.--...-.
T Consensus 192 ----------v~r-----~~-K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~ 255 (330)
T PF11707_consen 192 ----------VSR-----ST-KCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRES 255 (330)
T ss_pred ----------CCh-----hh-hhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcc
Confidence 111 01 123478887777777443333311111 22222333333344455555442211100
Q ss_pred -------hcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccccccccee
Q 007343 288 -------LTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF 344 (607)
Q Consensus 288 -------l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f 344 (607)
.......+.+.+ +.. +++.+. |.---.-.+.+..++..+|+++.++...+
T Consensus 256 ~~~~~~~~~~~~~~~~Nk~---L~~-ll~~lk---p~e~~~q~~Lvl~Il~~~PeLva~Y~~~~ 312 (330)
T PF11707_consen 256 DSGVPVTINNKSFKINNKL---LLN-LLKKLK---PWEDDRQQELVLKILKACPELVAPYFNNL 312 (330)
T ss_pred cccccccccCCCCCcccHH---HHH-HHHHCC---CCccHHHHHHHHHHHHHChHHHHHHHHhh
Confidence 000100111111 111 222332 22233455667788999999988877654
No 210
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=57.76 E-value=2.1e+02 Score=31.15 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=93.7
Q ss_pred HHHHHHhcCCCc-------chhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHc---------CCCC
Q 007343 50 KVISYMTIGIDV-------SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDC---------KDED 113 (607)
Q Consensus 50 kli~~~~~G~d~-------s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl---------~~~n 113 (607)
.++.....|.|- ..+|-.+...+.|+|...--+|-|++.++++.+..-.-++-|.+.+-| -|.|
T Consensus 295 el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgn 374 (604)
T KOG4500|consen 295 ELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGN 374 (604)
T ss_pred hHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 345566678653 234455567889999999999999999999876654445545444432 3456
Q ss_pred HHHHHHHHHHhhcCChHh-----hHHH-HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC-----CcCCCCchHHHHHh
Q 007343 114 PMIRGLALRSLCSLRVAN-----LVEY-LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP-----TCIDADFPPTLKHL 182 (607)
Q Consensus 114 ~~ir~lALr~l~~i~~~e-----~~~~-l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~-----~~~~~~~~~~L~~l 182 (607)
-..+-.++.++-++..|- +++. +...|..-+.-..|-|.-+- ++-+|+.+...+ ....+..+++|...
T Consensus 375 V~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkl-lgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W 453 (604)
T KOG4500|consen 375 VERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKL-LGTLRMIRDSQEYIACELAKNPELFEKLVDW 453 (604)
T ss_pred chhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHH-HHHHHHHHhchHHHHHHHhcCHHHHHHHHHh
Confidence 666667777777765542 2222 33344454544555444443 344455443333 22234566677776
Q ss_pred hcCCCCh-hHHHHHHHHHHHHHhh
Q 007343 183 MLNDPDP-QVVANCLSALQEIWSL 205 (607)
Q Consensus 183 Ll~D~d~-~V~~~a~~~L~ei~~~ 205 (607)
-..+|. +|.+....++..+.++
T Consensus 454 -sks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 454 -SKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred -hhCCccchhhhhhhHHHHHHHHh
Confidence 355554 5888888888777665
No 211
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=57.00 E-value=15 Score=23.42 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcCChHhhHHHHHH
Q 007343 114 PMIRGLALRSLCSLRVANLVEYLVG 138 (607)
Q Consensus 114 ~~ir~lALr~l~~i~~~e~~~~l~~ 138 (607)
+.+|..|..+|++++.++-.+.+..
T Consensus 1 ~~vR~~aa~aLg~~~~~~a~~~L~~ 25 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEAVPALIK 25 (30)
T ss_pred CHHHHHHHHHHHHcCCHhHHHHHHH
Confidence 3688999999999998877665543
No 212
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.61 E-value=1.2e+02 Score=27.52 Aligned_cols=82 Identities=11% Similarity=-0.037 Sum_probs=52.5
Q ss_pred HHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChH----hhH-HHHHHHHhhhcCC------CChHH
Q 007343 86 YVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVA----NLV-EYLVGPLGLGLKD------NNSYV 151 (607)
Q Consensus 86 ~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~----e~~-~~l~~~i~~~L~d------~~~~V 151 (607)
-++-..+.+++.+.-++-.++|-++++||.+.-+||..+-.+ +.+ +++ ......+.+++.+ .++-|
T Consensus 24 eicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~V 103 (139)
T cd03567 24 AFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKV 103 (139)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHH
Confidence 444444556666778899999999999999998888766443 222 222 2333455565542 57899
Q ss_pred HHHHHHHHHHHHhhCC
Q 007343 152 RTVAVIGVLKLYHISA 167 (607)
Q Consensus 152 RK~A~lal~kl~~~~p 167 (607)
|.+.+.-+..-....+
T Consensus 104 k~kil~li~~W~~~f~ 119 (139)
T cd03567 104 KTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9988766655443333
No 213
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=56.53 E-value=63 Score=30.10 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=49.3
Q ss_pred HHHhcccCCCCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhHHhHHH
Q 007343 470 WMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRAL 544 (607)
Q Consensus 470 wilGEy~~~i~~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dvrdRA~ 544 (607)
|++-.+...+.+...-++.+.+.+..-+ ..+-..++.|+.=+.--. ...++-+..+|.++.++.+.+.|.-|.
T Consensus 81 ~lv~~~p~~vle~~~~l~~~ld~l~~lp-~~~a~~ll~Al~PLi~~s-~~lrd~lilvLRKamf~r~~~~R~~Av 153 (158)
T PF14676_consen 81 ELVRKAPLTVLECSSKLKELLDYLSFLP-GDVAIGLLRALLPLIKFS-PSLRDSLILVLRKAMFSRELDARQMAV 153 (158)
T ss_dssp HHHHH-HHHHS-S-HHHHGGGGGTTTS--HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTT-SSHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 3333333334444455666777777777 888888888888886544 578999999999999999999998775
No 214
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.43 E-value=4e+02 Score=31.45 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCC----CHHHHHHHHHHhhcCCh---HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC
Q 007343 97 LALLTINFLQRDCKDE----DPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS 166 (607)
Q Consensus 97 l~~L~iNtl~kDl~~~----n~~ir~lALr~l~~i~~---~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~ 166 (607)
+.=-.+|.+..||.++ +|+.++-|+..+-..|. ++.+-.++|.+.+.|..+++-|-+-||.|+=|+....
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Confidence 3445678889999884 58999999998877654 5666678888889999999999999999998886543
No 215
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=56.17 E-value=80 Score=27.28 Aligned_cols=52 Identities=8% Similarity=-0.005 Sum_probs=38.2
Q ss_pred CchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC
Q 007343 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL 127 (607)
Q Consensus 76 ~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i 127 (607)
......-....++.+...+++..--++..+.+-++++||.+.-.||..|=.+
T Consensus 13 ~~~p~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l 64 (115)
T cd00197 13 NMGPDWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC 64 (115)
T ss_pred CCCCCHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3344444555566666666677778999999999999999999998876554
No 216
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=56.02 E-value=86 Score=28.51 Aligned_cols=77 Identities=16% Similarity=0.112 Sum_probs=46.6
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHh-hcC
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA-ANV 385 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~-~~~ 385 (607)
+.+-+++++|++++.+|..+..++++...-|..++ .++.-++-|.+++++ .|. ...
T Consensus 43 i~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~ev------------as~~Fl~el~kl~~~-----------k~~~~~~ 99 (139)
T cd03567 43 LAHKIQSPQEKEALQALTVLEACMKNCGERFHSEV------------GKFRFLNELIKLVSP-----------KYLGSRT 99 (139)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH------------HhHHHHHHHHHHhcc-----------ccCCCCC
Confidence 34446678999999999999999998876666543 222333333333322 121 123
Q ss_pred CHHHHHHHHHHHHHHHcccCC
Q 007343 386 DIPIARESIRAVGKIALQQYD 406 (607)
Q Consensus 386 d~~~~~~~i~~I~~la~k~~~ 406 (607)
+..++.++..-|..-+..|++
T Consensus 100 ~~~Vk~kil~li~~W~~~f~~ 120 (139)
T cd03567 100 SEKVKTKIIELLYSWTLELPH 120 (139)
T ss_pred CHHHHHHHHHHHHHHHHHhcc
Confidence 556666666666666666654
No 217
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=55.94 E-value=1.8e+02 Score=33.74 Aligned_cols=138 Identities=15% Similarity=0.175 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHh
Q 007343 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS 453 (607)
Q Consensus 374 Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~ 453 (607)
.+.+|+.++.+.|....+++-..+...-.. ....|.|..|++..-..++.-.-+++..+ +.|.- +. ++..
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~y~~~t~s~~~~~il~~~-----~~P~~-K~---~~~~ 74 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNS-DREPWLVNGLVDYYLSTNSQRALEILVGV-----QEPHD-KH---LFDK 74 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhc-cchHHHHHHHHHHHhhcCcHHHHHHHHhc-----CCccH-HH---HHHH
Confidence 355667788888888888777766553221 11359999999986555543222222211 33421 11 2222
Q ss_pred hhhccCCchHHHHHHHHHHhcccCCCCC------hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHH
Q 007343 454 ISSQNVQEPKAKAALIWMLGEYSQDMQD------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQK 522 (607)
Q Consensus 454 l~~~~~~~~~~~~~~iwilGEy~~~i~~------~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~ 522 (607)
+ .+.+..+..|-.++-++|.+...-+. -..++..+++....+.+..+=...|++++-+.-+.|....+
T Consensus 75 l-~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 75 L-NDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred H-HHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 2 24445677788888888988765432 12356667776666654777778888889998888854433
No 218
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=54.19 E-value=18 Score=24.97 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=26.7
Q ss_pred CCCchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 172 ~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
+.+.++.|.++| .+.|+.|+.+|+.+|..+.
T Consensus 10 ~~g~i~~Lv~ll-~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQLL-KSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHHT-TSSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHH-cCCCHHHHHHHHHHHHHHh
Confidence 357889999985 8999999999999998764
No 219
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=53.57 E-value=2.4e+02 Score=27.97 Aligned_cols=169 Identities=11% Similarity=-0.014 Sum_probs=95.5
Q ss_pred cCCHHHHHHHHHHHHHHHccc-CChHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhh-------
Q 007343 384 NVDIPIARESIRAVGKIALQQ-YDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS------- 455 (607)
Q Consensus 384 ~~d~~~~~~~i~~I~~la~k~-~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~------- 455 (607)
..++++....++++..+|..- ....-+++++..+...++.....-....+..+..+.|..+...-.++....
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~ 91 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSF 91 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhccccc
Confidence 357788888888888887654 444568888888877765433222223344444444443332212222211
Q ss_pred hccCCchHHHHHHHHHHhcccCCCCC-hHHHHHHHHHhh-hcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhc
Q 007343 456 SQNVQEPKAKAALIWMLGEYSQDMQD-APYILESLTENW-EEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA 533 (607)
Q Consensus 456 ~~~~~~~~~~~~~iwilGEy~~~i~~-~~~~l~~l~~~f-~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~ 533 (607)
.+.-...+..-+.++-+-+.+..-++ .++++..+..-+ ...+ +.+++..|.++.=++-..=-+......-+.+....
T Consensus 92 ~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~~~-~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~ 170 (234)
T PF12530_consen 92 SSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQSCD-EVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSL 170 (234)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCC
Confidence 11122333344445566666655544 778887777777 4555 88899889888877611101223333333333455
Q ss_pred CCChhHHhHHHHHHHHccCC
Q 007343 534 DFHQDVHDRALFYHRLLQYN 553 (607)
Q Consensus 534 d~~~dvrdRA~~y~~Ll~~~ 553 (607)
+..|.|...-.....++...
T Consensus 171 ~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 171 DYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred ccchHHHHHHHHHHHHhccc
Confidence 67888888766666666653
No 220
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=52.01 E-value=3.2e+02 Score=29.67 Aligned_cols=73 Identities=10% Similarity=0.003 Sum_probs=45.0
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC--CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 133 ~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~--~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
-...+..+..++.+++|.-|...-..+.++|...++.-. ...+...+.+.+-....+..++.++..+..|...
T Consensus 131 ~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 131 DQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp -HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 334444566778888898888888888888888777531 0122333444432345667788888888888753
No 221
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=51.44 E-value=1.1e+02 Score=32.57 Aligned_cols=122 Identities=10% Similarity=0.112 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhCCcccccccc-eeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhc------------C
Q 007343 319 SYAVLSHLHILVMRAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAAN------------V 385 (607)
Q Consensus 319 ~y~~L~~i~~l~~~~p~~~~~~~~-~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~------------~ 385 (607)
+-+|-+-|-..-...|++-..-+. +|.|..+|+..||+.++.=|-.+|..++...+.++|.+.+.. .
T Consensus 41 k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~ 120 (460)
T KOG2213|consen 41 KRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLTGLFGQIEVG 120 (460)
T ss_pred HHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 444555555555666665444343 567778888999999999999999999988888877665541 2
Q ss_pred CHHHHHHHHHHHHHHHcccCC-h--HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhC
Q 007343 386 DIPIARESIRAVGKIALQQYD-V--NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY 440 (607)
Q Consensus 386 d~~~~~~~i~~I~~la~k~~~-~--~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~ 440 (607)
|++++.+.+.-|..=....+. . ...=+-+++.+..+-+.|..|-...+.+++...
T Consensus 121 D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~l 178 (460)
T KOG2213|consen 121 DEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASL 178 (460)
T ss_pred hHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 555555555444321111111 1 112222334444443445555555555665543
No 222
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=48.91 E-value=6.9e+02 Score=31.98 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCC
Q 007343 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (607)
Q Consensus 224 ~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~ 291 (607)
.++.+|+..+..+.+|.|-.|+..|-..... .+-.++.+.+..+++. |+..+..++.++..+..+
T Consensus 192 ~l~~kl~~~l~~ap~~lq~eiI~~LPeIl~d--s~h~~v~~~L~~ll~~-~~~L~~~iLd~Ls~L~Ls 256 (1426)
T PF14631_consen 192 ELTDKLFEVLSIAPVELQKEIISSLPEILDD--SQHDEVVEELLELLQE-NPELTVPILDALSNLNLS 256 (1426)
T ss_dssp HHHHHHHHHHHHS-TTTHHHHHHTHHHHS-G--GGHHHHHHHHHHHHHH--STTHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHhc-CCchhhhHHHHHhcCCCC
Confidence 4567777777678889999999888877643 2334556666666654 333444455556555443
No 223
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=47.91 E-value=1.2e+02 Score=25.54 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=43.4
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHcccCC-----hHHHHHHHHHhhhhcCchhhHHHHHHHHHHHH
Q 007343 380 EYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLR 438 (607)
Q Consensus 380 ~y~~~~d~~~~~~~i~~I~~la~k~~~-----~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~ 438 (607)
+|+...+ +=+.+++...-..+...++ ..+|+.+|-.++..+.+|+..| +..+..++.
T Consensus 12 ~f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~ 73 (95)
T PF07749_consen 12 EFVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE 73 (95)
T ss_dssp HHHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH
T ss_pred HHHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh
Confidence 5666555 6667777777777777654 3579999999999999999999 477888887
No 224
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=47.90 E-value=71 Score=34.20 Aligned_cols=131 Identities=13% Similarity=0.085 Sum_probs=66.2
Q ss_pred HHHHHHHHHH-HHhhCCCCcCCCCchHHHHHhhc-----CCCChhHHHHHHHHHHHHHhhccccchh-----hhhhHhhh
Q 007343 152 RTVAVIGVLK-LYHISAPTCIDADFPPTLKHLML-----NDPDPQVVANCLSALQEIWSLEASTSEE-----ASREREAL 220 (607)
Q Consensus 152 RK~A~lal~k-l~~~~p~~~~~~~~~~~L~~lLl-----~D~d~~V~~~a~~~L~ei~~~~~~~~~~-----~~~~~~~l 220 (607)
||.||.-+++ +.+..++.+. +-+...+..++. ...|.--.=+|+.++..++.+..+.... ...+....
T Consensus 227 rR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 227 RRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred cHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 3346665554 5555444431 122344555431 1234555666888888887554211000 00011112
Q ss_pred cchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC-ChhHHHHHHHHHHHHhccCchHHHHHHHHH
Q 007343 221 ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFDIMNLLEDRLQHANGAVVLSTIKV 284 (607)
Q Consensus 221 i~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~-~~~~~~~il~~l~~~L~~~n~aVv~~ai~~ 284 (607)
+...++..|- .-....||++...++.+..|... +++....+++.+...|++.+..|---|+.+
T Consensus 306 f~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 306 FSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 2222222222 11256899999999999988543 445666788888889988887765444433
No 225
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=47.51 E-value=86 Score=29.95 Aligned_cols=72 Identities=24% Similarity=0.306 Sum_probs=47.7
Q ss_pred HHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhh-CCCCcC--CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 007343 135 YLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHI-SAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (607)
Q Consensus 135 ~l~~~i~~~L~d~-~~~VRK~A~lal~kl~~~-~p~~~~--~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~ 208 (607)
.+.|-...+|... +|| |=-|..++..+... .++.+. -+.++.-|++.| +..|+.|..+++.+|..+....+.
T Consensus 38 ~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL-~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRAL-NTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3444555555544 454 45666666666666 444431 145677788885 899999999999999998655443
No 226
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=47.49 E-value=27 Score=23.43 Aligned_cols=27 Identities=22% Similarity=0.042 Sum_probs=20.8
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHH
Q 007343 136 LVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (607)
Q Consensus 136 l~~~i~~~L~d~~~~VRK~A~lal~kl 162 (607)
.++.+.+++.++++.+++.|+.++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345566777788899999999888765
No 227
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.30 E-value=1e+02 Score=32.99 Aligned_cols=63 Identities=24% Similarity=0.197 Sum_probs=48.5
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC--CCCchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 140 i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~--~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
+..-+.|.+.-|||.|..++..+...+|+.+. -...++.+..+. .|.|..|+...+.++..+.
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i-~D~~~~vR~~~~qll~~~i 127 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELI-LDDDSLVRDALYQLLDSLI 127 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhh-cCccccHHHHHHHHHHHHH
Confidence 34557899999999999999999988888762 123455666664 7889999999888887754
No 228
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=45.90 E-value=2.7e+02 Score=26.34 Aligned_cols=112 Identities=21% Similarity=0.335 Sum_probs=73.3
Q ss_pred HHHHHHHhhhcCCCC--CChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHH
Q 007343 24 DLKSQLRQLAGSRAP--GIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLT 101 (607)
Q Consensus 24 elr~~l~~~~~~~~~--~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~ 101 (607)
|.|..|+... .++| .-.+.-++.+.|-=+..... ....+-+++.+.-+|...-+-.|-.+..-...+|+-++
T Consensus 2 ~~~~~l~~i~-~~~pl~~L~~eek~llW~~R~~~~~~---p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aL-- 75 (171)
T cd00872 2 EEREQLEAII-ARDPLSELTEEDKELLWKLRHECRKK---PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQAL-- 75 (171)
T ss_pred hHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHHHHhhC---cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHH--
Confidence 4455555432 1232 12245667777776665543 44577778888888887777777777777766666544
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcC
Q 007343 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (607)
Q Consensus 102 iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~ 145 (607)
.-+-... +++.||.-|++.+.++.+.++..++..-|+ +|.
T Consensus 76 -eLL~~~f--~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQ-aLK 115 (171)
T cd00872 76 -ELLDCNF--PDEHVREFAVRCLEKLSDDELLQYLLQLVQ-VLK 115 (171)
T ss_pred -HHCCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHH
Confidence 2222333 459999999999999999998887766654 444
No 229
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=45.12 E-value=30 Score=32.55 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=44.7
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 147 NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 147 ~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
.--.+||.|.-|++.+....++.+.-.++.+.+..-| .| ++.+..-+...+..+....|
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL-~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL-KD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT-SS--HHHHHHHHHHHHHHHHS-H
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc-CC-cHHHHHHHHHHHHHHHHhCH
Confidence 3458999999999999988777774456788888884 88 88888888878887776544
No 230
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=44.67 E-value=3.3e+02 Score=27.08 Aligned_cols=143 Identities=20% Similarity=0.227 Sum_probs=85.5
Q ss_pred hccCchHHHHHHHHHHHhhcC-------CcchhHH--HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCC-ccc--
Q 007343 270 LQHANGAVVLSTIKVFLHLTL-------SMTDVHQ--QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-FIF-- 337 (607)
Q Consensus 270 L~~~n~aVv~~ai~~i~~l~~-------~~~~~~~--~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p-~~~-- 337 (607)
++..+++|+-.++.+...+.+ ..+.... +.+..++.-+..++.+.++.+|-.+++-+..++...- ..-
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 445566666666655443322 1111110 1234566667778888888999999999998876531 111
Q ss_pred ------ccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHcccCCh-H
Q 007343 338 ------ASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV--DIPIARESIRAVGKIALQQYDV-N 408 (607)
Q Consensus 338 ------~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~--d~~~~~~~i~~I~~la~k~~~~-~ 408 (607)
..+...=.+..+-|. ++..+|+- =...+++.|+.++.+. +....-.++.+++.+|.+=|.. .
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~-l~~~~Le~--------Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~ 152 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPL-LNPQQLEA--------EANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMS 152 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SS-S-HHHHHH--------HHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHH
T ss_pred ccccccccCCCHHHcCCCCCc-CCHHHHHH--------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence 111111123445554 77777772 2457889999998875 4778888999999999888874 5
Q ss_pred HHHHHHHHhhhhc
Q 007343 409 AIVDRLLQFLEME 421 (607)
Q Consensus 409 ~~v~~ll~ll~~~ 421 (607)
.++.+++.+-...
T Consensus 153 ~Il~~ll~~~~~~ 165 (239)
T PF11935_consen 153 RILPALLSFNPNL 165 (239)
T ss_dssp HHHHHHHHHHHS-
T ss_pred HHHHHHHhcCccc
Confidence 6888888876544
No 231
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=44.11 E-value=3.6e+02 Score=34.34 Aligned_cols=191 Identities=14% Similarity=0.169 Sum_probs=103.6
Q ss_pred HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc
Q 007343 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (607)
Q Consensus 130 ~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~ 209 (607)
++..+.+..-...++.++++-||..+......+|....+.. +.+.+..|...+ .+.+..-+.+|+.+|.++...+|..
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~-qqeVv~~Lvthi-~sg~~~ev~~aL~vL~~L~~~~~~~ 507 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC-QQEVVGALVTHI-GSGNSQEVDAALDVLCELAEKNPSE 507 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH-HHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhccHHH
Confidence 44556666666778899999999999999999998763322 345566665554 4556656678999999998766531
Q ss_pred chhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccC---CC-ChhHHHHHHHHHHHHhccCchHH----HHHH
Q 007343 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV---PL-DSNEIFDIMNLLEDRLQHANGAV----VLST 281 (607)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~---~~-~~~~~~~il~~l~~~L~~~n~aV----v~~a 281 (607)
.. .. ...+..+++.+...++--.-++.++|.... +. ......++--.+...|.+++.-. +.+|
T Consensus 508 ---l~-----~f-a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~del~ivIRKQLss~~~~~K~~GIIGa 578 (1426)
T PF14631_consen 508 ---LQ-----PF-ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDELHIVIRKQLSSSNPKYKRIGIIGA 578 (1426)
T ss_dssp ---HH-----HT-HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHHHHHHHHHHHT-SSHHHHHHHHHHH
T ss_pred ---HH-----HH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHhhcCCcHHHHHHhHHHH
Confidence 11 01 124556666666666655555666665532 11 11223345556677788877543 3555
Q ss_pred HHHHHhhcCCc--c--------hhHHHHHHHHHHHHHHHhc---cCCchhHHHHHHHHHHHHhh
Q 007343 282 IKVFLHLTLSM--T--------DVHQQVYERIKAPLLTLVS---SGSPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 282 i~~i~~l~~~~--~--------~~~~~~~~~l~~~L~~ll~---s~~~ni~y~~L~~i~~l~~~ 332 (607)
+..+-++.... . ++..+..+.+...| .++. ...|+..-+-.+-+..+++.
T Consensus 579 v~~i~~la~~~~~~~~~~~~~~~l~~~~~~q~~~Ll-~l~~ss~~~sp~~~ALfYDELA~li~~ 641 (1426)
T PF14631_consen 579 VMMIKHLAAKNSESDSSSSERSNLSDEQCKQATSLL-ELVQSSSEQSPEALALFYDELANLIQS 641 (1426)
T ss_dssp HHHHHHTT------------------HHHHHHHHHH-HHHHHHHSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCccccccccCCHHHHHHHHHHH-HHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 55555554321 1 01112233333332 2221 34566666666666666654
No 232
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.09 E-value=1.5e+02 Score=26.66 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhh
Q 007343 153 TVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR 232 (607)
Q Consensus 153 K~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~ 232 (607)
-.+.+.+.-+.+.+++.. .+.+..|.+.| ..+||.|+..|+.+|..+.++.+..-. ..+..+.++..|...
T Consensus 23 w~~~l~icD~i~~~~~~~--kea~~~l~krl-~~~~~~vq~~aL~lld~lvkNcg~~f~------~ev~~~~fl~~l~~l 93 (140)
T PF00790_consen 23 WSLILEICDLINSSPDGA--KEAARALRKRL-KHGNPNVQLLALTLLDALVKNCGPRFH------REVASKEFLDELVKL 93 (140)
T ss_dssp HHHHHHHHHHHHTSTTHH--HHHHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHSHHHHH------HHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccH--HHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHcCCHHHH------HHHhHHHHHHHHHHH
Confidence 355556666665554443 35667777775 789999999999999998876542110 011222233333332
Q ss_pred c--CCCChh--HHHHHHHHHhcc
Q 007343 233 I--KEFSEW--AQCLVLELVAKY 251 (607)
Q Consensus 233 l--~~~~~w--~qi~iL~lL~~~ 251 (607)
+ ....++ .+-++++++..+
T Consensus 94 ~~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 94 IKSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHHTTTHHHSHHHHHHHHHHHHH
T ss_pred HccCCCCchhHHHHHHHHHHHHH
Confidence 2 234445 677777766653
No 233
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=43.95 E-value=1.7e+02 Score=26.56 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=26.2
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCcccccc
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASD 340 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~ 340 (607)
|.+-+.+++|++++.+|..+..++.+...-|..+
T Consensus 46 l~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e 79 (142)
T cd03569 46 LKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDE 79 (142)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 4444556899999999999999998876555544
No 234
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.68 E-value=90 Score=32.30 Aligned_cols=63 Identities=25% Similarity=0.175 Sum_probs=41.9
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHhhCCCC-cC--CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPT-CI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 139 ~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~-~~--~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
.+...+.+.+|-|||.|+.-+.-+--. +-. .. ....++.+.++ +.|.++ ...|+.++..+.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL-~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQL-LKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHH-ccCccc--ccHHHHHHHHHHhh
Confidence 466888999999999999766654322 111 10 12356778887 589888 45566677777664
No 235
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=43.57 E-value=6.4e+02 Score=30.13 Aligned_cols=237 Identities=14% Similarity=0.132 Sum_probs=132.7
Q ss_pred HHHHHHHHhhcCCh----HhhHHHHHHHHhhhcCC-CChHHHHHHHHHHHHHHhhCC---CCcCCCCchHHHHHhhcCCC
Q 007343 116 IRGLALRSLCSLRV----ANLVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISA---PTCIDADFPPTLKHLMLNDP 187 (607)
Q Consensus 116 ir~lALr~l~~i~~----~e~~~~l~~~i~~~L~d-~~~~VRK~A~lal~kl~~~~p---~~~~~~~~~~~L~~lLl~D~ 187 (607)
+.+.-+-..+..+. .+....++..++.++.. ..|..=-.|..++.++-...+ +.. ..+.......+..|.
T Consensus 426 ~qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~ 503 (1005)
T KOG2274|consen 426 IQEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDV 503 (1005)
T ss_pred HHHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCC
Confidence 34444555555543 34555566566666544 466555589999998765433 322 233443334445677
Q ss_pred ChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHH----H
Q 007343 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI----M 263 (607)
Q Consensus 188 d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~i----l 263 (607)
-+.+..+|+.++...++..+- .+ .-+.++.-|..-.+++++=.-..+++.|...+.-||+.+... .
T Consensus 504 ~~~~ki~a~~~~~~~~~~~vl--~~--------~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~ 573 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCKVKVL--LS--------LQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKIC 573 (1005)
T ss_pred CCchhHHHHHHHHhccCceec--cc--------cchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchh
Confidence 788999999999888743321 00 113345555555567777777788888887776666655433 3
Q ss_pred HHHHHH-hccC-chHHH---HHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCC----chhHHHHHHHHHHHHhhCC
Q 007343 264 NLLEDR-LQHA-NGAVV---LSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGS----PEQSYAVLSHLHILVMRAP 334 (607)
Q Consensus 264 ~~l~~~-L~~~-n~aVv---~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~----~ni~y~~L~~i~~l~~~~p 334 (607)
.....+ +..+ .|-|. -.+.+-+++....... ..++..+.|++.+..+. +....++++.+..++...|
T Consensus 574 P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~----m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp 649 (1005)
T KOG2274|consen 574 PLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP----MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP 649 (1005)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc----hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC
Confidence 332222 2333 35222 2223333332222111 23456677777776655 7788999999998888876
Q ss_pred ccccccc-ceee------eccCCCHhHHHHHHHHHHHccCC
Q 007343 335 FIFASDY-KHFY------CQYNEPSYVKKLKLEMLTAVANE 368 (607)
Q Consensus 335 ~~~~~~~-~~f~------~~~~d~~~Ik~~kL~iL~~l~n~ 368 (607)
.-+.+.+ ...| ..++|+...-..+=|.|.++.+.
T Consensus 650 ~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 650 SPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred CCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 5333221 1111 23555554555666666665443
No 236
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=42.91 E-value=1.1e+02 Score=32.58 Aligned_cols=91 Identities=13% Similarity=-0.006 Sum_probs=62.5
Q ss_pred hhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC---Ch----Hhh-HHHHHHHH
Q 007343 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RV----ANL-VEYLVGPL 140 (607)
Q Consensus 69 i~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~----~e~-~~~l~~~i 140 (607)
.+...-.+-.++-=+-|-+|-...++||..--++-.+.|-+++.||.|.-+||+.+..+ +. .|+ .......+
T Consensus 14 ~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 14 EKATDEKNTSENWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred HHhcCcccccccHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHH
Confidence 34444334444444556777777888999999999999999999999999999988764 11 122 33445566
Q ss_pred hhhcC-CCChHHHHHHHHHH
Q 007343 141 GLGLK-DNNSYVRTVAVIGV 159 (607)
Q Consensus 141 ~~~L~-d~~~~VRK~A~lal 159 (607)
.+++. ...|-|+++-...+
T Consensus 94 ~al~~~~~h~kV~~k~~~lv 113 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLV 113 (462)
T ss_pred HHHHhhcccHHHHHHHHHHH
Confidence 67777 45788887654443
No 237
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=42.60 E-value=7.3e+02 Score=33.38 Aligned_cols=285 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHcCCCCHHHHHHHHHHhhcCChH--hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC--------C--cCC
Q 007343 105 LQRDCKDEDPMIRGLALRSLCSLRVA--NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP--------T--CID 172 (607)
Q Consensus 105 l~kDl~~~n~~ir~lALr~l~~i~~~--e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~--------~--~~~ 172 (607)
+..+..+.|.. -.+|.++++++... ...+.+-..+...+...++.+||.|++++..+++.++. . +
T Consensus 450 ~~~~~~~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v-- 526 (2341)
T KOG0891|consen 450 ILQKTGDSTDD-IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVV-- 526 (2341)
T ss_pred hhhhcccccHH-HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHH--
Q ss_pred CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 007343 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (607)
Q Consensus 173 ~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~ 252 (607)
......+..+-+.|+||.++...+..+.+-... .+..+..++.++.++.+..=-.|......+.+.+
T Consensus 527 ~~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~-------------~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~ 593 (2341)
T KOG0891|consen 527 KEVLSALLTVAIADTDPDIRIRVLSSLNERFDA-------------QLAQPDLLRLLFIALHDENFAIQELATVIIGRLS 593 (2341)
T ss_pred HHHHHHHHHHhccCCCcchhhhHHhhhccchhh-------------hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccc
Q ss_pred C-----CChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 007343 253 P-----LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (607)
Q Consensus 253 ~-----~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~ 327 (607)
- .=+.-....+.....+..+...-+-.++++-...+....+.......+.+-..+..-+.+.++-+.-.++..+.
T Consensus 594 ~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~ 673 (2341)
T KOG0891|consen 594 SYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIG 673 (2341)
T ss_pred cccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHH
Q ss_pred HHHhhCCcccccccceeeec------cCCCHhHHHHHHHHHHHccCCCCHH--------HHHHHHHHHhhcC-CHHHHHH
Q 007343 328 ILVMRAPFIFASDYKHFYCQ------YNEPSYVKKLKLEMLTAVANESNTY--------EIVTELCEYAANV-DIPIARE 392 (607)
Q Consensus 328 ~l~~~~p~~~~~~~~~f~~~------~~d~~~Ik~~kL~iL~~l~n~~N~~--------~Iv~eL~~y~~~~-d~~~~~~ 392 (607)
.+++...+......+.+++. .......|.-.+-.+..++..+-+. ..++-|...+... ...++++
T Consensus 674 eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~ 753 (2341)
T KOG0891|consen 674 ELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRRE 753 (2341)
T ss_pred HHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHH
Q ss_pred HHHHHHHHHcccC
Q 007343 393 SIRAVGKIALQQY 405 (607)
Q Consensus 393 ~i~~I~~la~k~~ 405 (607)
+++.+|.++...|
T Consensus 754 ~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 754 AIRLLGLLGALDP 766 (2341)
T ss_pred HHHHhhhhcccch
No 238
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=42.51 E-value=50 Score=30.63 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHH
Q 007343 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPV 225 (607)
Q Consensus 146 d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~ 225 (607)
...+.||-.|.+++.|+....++... ..+.+.+..++ .+.+..-...++.++..+.+-.|+ .+.. .+.+..+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~-~~~~~~i~~~~-~~~~~d~~i~~~~~l~~lfp~~~d----v~~~--l~~~eg~ 87 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFK-EKISDFIESLL-DEGEMDSLIIAFSALTALFPGPPD----VGSE--LFLSEGF 87 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-CCHHCCHHHHHHHHHHHHCTTTHH----HHHH--HCCTTTH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHH-ccccchhHHHHHHHHHHHhCCCHH----HHHH--HHhhhhH
Confidence 46778999999999999877766552 23455666664 555555666677777777654332 2211 1122233
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHhccCCCChhH---HHHHHHHHHHHhc
Q 007343 226 IYYLLNRIK--EFSEWAQCLVLELVAKYVPLDSNE---IFDIMNLLEDRLQ 271 (607)
Q Consensus 226 ~~~Ll~~l~--~~~~w~qi~iL~lL~~~~~~~~~~---~~~il~~l~~~L~ 271 (607)
...++.... ..++-.|..++++|..-+-...-- ....++.+...++
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~ 138 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK 138 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 444444443 456677888888877654321110 1234555566664
No 239
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=40.88 E-value=1e+02 Score=27.34 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=37.9
Q ss_pred HHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcC
Q 007343 242 CLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (607)
Q Consensus 242 i~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~ 290 (607)
..+++=++.....++.+...+++.|...|++.++-|-+.|.+++-++..
T Consensus 19 gy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 4445555554455677888999999999999999998999998877654
No 240
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=40.39 E-value=25 Score=38.24 Aligned_cols=129 Identities=22% Similarity=0.220 Sum_probs=77.3
Q ss_pred cCCCchhHHHHHHHHHhhccCCChHHHHHHHH-HHHHcCCCCHHHHHHHHHHhhcC--ChHhhHHH--------------
Q 007343 73 ATSDIVLKKMCYLYVGNYAKVNPDLALLTINF-LQRDCKDEDPMIRGLALRSLCSL--RVANLVEY-------------- 135 (607)
Q Consensus 73 ~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNt-l~kDl~~~n~~ir~lALr~l~~i--~~~e~~~~-------------- 135 (607)
+..+--.||..|-||..++...|++ -+.+ +.-.++|+||--|++||...+.| ++..+...
T Consensus 22 ~~~~~~~~~~~ygyw~~~~pd~~~~---g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v 98 (728)
T KOG4535|consen 22 STIKSIEKKVLYGYWSAFIPDTPEL---GSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSV 98 (728)
T ss_pred HHHhhhhhhhhhceeeeecCCCCCC---CCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHH
Confidence 3445567999999999998776664 2222 22367999999999999998876 23222111
Q ss_pred --------HHHHHhhhc-CCCChHHHHHHHHHHHHHHhhCCCCcCC----CCchHHHHHhhcCCCChhHHHHHHHHHHHH
Q 007343 136 --------LVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (607)
Q Consensus 136 --------l~~~i~~~L-~d~~~~VRK~A~lal~kl~~~~p~~~~~----~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei 202 (607)
+...+.-.| ...+|-|---.+-|+..+-...|-.-.+ .++...++.++ +.+|+.|..+++.++..|
T Consensus 99 ~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i-~~~d~~v~vs~l~~~~~~ 177 (728)
T KOG4535|consen 99 MIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYI-RHKDVNVRVSSLTLLGAI 177 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh-hcCCCChhhHHHHHHHHH
Confidence 111111111 1223333333444555554443321100 24567788875 889999999999998887
Q ss_pred Hhh
Q 007343 203 WSL 205 (607)
Q Consensus 203 ~~~ 205 (607)
...
T Consensus 178 v~t 180 (728)
T KOG4535|consen 178 VST 180 (728)
T ss_pred Hhc
Confidence 643
No 241
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=40.12 E-value=1.4e+02 Score=38.65 Aligned_cols=139 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred chHHHHHh--hcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC------------------
Q 007343 175 FPPTLKHL--MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK------------------ 234 (607)
Q Consensus 175 ~~~~L~~l--Ll~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~------------------ 234 (607)
|++.|..+ +..|+++.|+..|+..|.++....++ ...++.|..+-..++..++..+.
T Consensus 1345 W~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~---~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~ 1421 (1780)
T PLN03076 1345 WFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH---LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDG 1421 (1780)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc---cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q ss_pred -----CCChhH-------HHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcch-hHHHHHH
Q 007343 235 -----EFSEWA-------QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYE 301 (607)
Q Consensus 235 -----~~~~w~-------qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~-~~~~~~~ 301 (607)
+.+.|. --.+.++++.|...=.....++++.+.......|..+..-++.|+..+...... ...+..+
T Consensus 1422 ~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~ 1501 (1780)
T PLN03076 1422 DQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWL 1501 (1780)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHH
Q ss_pred HHHHHHHHHhccCCc
Q 007343 302 RIKAPLLTLVSSGSP 316 (607)
Q Consensus 302 ~l~~~L~~ll~s~~~ 316 (607)
.+...+..+....-|
T Consensus 1502 ~i~~~~~~lf~~T~p 1516 (1780)
T PLN03076 1502 EVVLSLKEAANATLP 1516 (1780)
T ss_pred HHHHHHHHHHHHhCC
No 242
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=40.11 E-value=2.8e+02 Score=29.35 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=46.7
Q ss_pred CChHhhHHHHHHHHhhhc----------CCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHH----HHHhhcCCCCh-hH
Q 007343 127 LRVANLVEYLVGPLGLGL----------KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT----LKHLMLNDPDP-QV 191 (607)
Q Consensus 127 i~~~e~~~~l~~~i~~~L----------~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~----L~~lLl~D~d~-~V 191 (607)
+.....+-.++|.+..|+ .+.+..+|.-|+..+..+++.+.... +++.++ +.+.+++...+ ..
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y--~~l~~ri~~tl~k~l~d~~~~~~~ 327 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY--NTLQPRITRTLLKALLDPKKPLTT 327 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHHcCCCCCcch
Confidence 444555666777777665 23456999999999999999877765 344444 44444333333 33
Q ss_pred HHHHHHHHHHHH
Q 007343 192 VANCLSALQEIW 203 (607)
Q Consensus 192 ~~~a~~~L~ei~ 203 (607)
...|+..|..++
T Consensus 328 ~YGAi~GL~~lG 339 (343)
T cd08050 328 HYGAIVGLSALG 339 (343)
T ss_pred hhHHHHHHHHhC
Confidence 566666666553
No 243
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=39.90 E-value=2.8e+02 Score=26.02 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q 007343 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lAL 121 (607)
..-++.+.+-=+.... . ...++-+++.+.=++....+=.|-.+..-..-+++-++ .-|-... +++.||..|+
T Consensus 28 ~~ek~llW~~R~~l~~-~--p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aL---eLL~~~f--~~~~VR~yAV 99 (166)
T cd00870 28 DEEKDLIWKFRFYLTN-N--KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDAL---ELLSPYF--TNPVVRKYAV 99 (166)
T ss_pred HHHHHHHHHhHHHHhh-C--cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHH---HHcCccC--CCHHHHHHHH
Confidence 4456666665444332 2 34466666666666766666677677666655555443 2222222 3699999999
Q ss_pred HHhhcCChHhhHHHHHHHHhh
Q 007343 122 RSLCSLRVANLVEYLVGPLGL 142 (607)
Q Consensus 122 r~l~~i~~~e~~~~l~~~i~~ 142 (607)
+.|....+.++..++..-|+.
T Consensus 100 ~~L~~~sd~eL~~yL~QLVQa 120 (166)
T cd00870 100 SRLKLASDEELLLYLLQLVQA 120 (166)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 999999988887777666543
No 244
>PF05536 Neurochondrin: Neurochondrin
Probab=39.68 E-value=6.1e+02 Score=28.71 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=49.9
Q ss_pred HHhccCCchhHHHHHHHHHHHHhhCCcccc------cccc-eeee---c----c--CCCHhHHHHHHHHHHHccCCCCHH
Q 007343 309 TLVSSGSPEQSYAVLSHLHILVMRAPFIFA------SDYK-HFYC---Q----Y--NEPSYVKKLKLEMLTAVANESNTY 372 (607)
Q Consensus 309 ~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~------~~~~-~f~~---~----~--~d~~~Ik~~kL~iL~~l~n~~N~~ 372 (607)
++|.+.+.+-||+||-.+.+++...+..-. .-+. .|.- + . -++..-+..++.||..+|...++.
T Consensus 12 ~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a 91 (543)
T PF05536_consen 12 SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELA 91 (543)
T ss_pred HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhh
Confidence 456666677789988888887765442110 1111 1210 0 1 144667778888888877765542
Q ss_pred ---H---HHHHHHHHhhcCCH-HHHHHHHHHHHHHH
Q 007343 373 ---E---IVTELCEYAANVDI-PIARESIRAVGKIA 401 (607)
Q Consensus 373 ---~---Iv~eL~~y~~~~d~-~~~~~~i~~I~~la 401 (607)
+ -+.-|.+.+.+.+. +...++...+..++
T Consensus 92 ~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia 127 (543)
T PF05536_consen 92 SSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA 127 (543)
T ss_pred cCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 2 23333444444443 55555555555555
No 245
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=39.36 E-value=4.8e+02 Score=27.48 Aligned_cols=112 Identities=13% Similarity=0.164 Sum_probs=69.8
Q ss_pred HHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHH
Q 007343 309 TLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIP 388 (607)
Q Consensus 309 ~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~ 388 (607)
.++..+.-++.--|+..+..+..+++.+.+..+ ..|.+........-+.+.+.-
T Consensus 171 ~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl--------------------------~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 171 KYVQLPNFDIASDAFSTFKELLTRHKKLVAEFL--------------------------SNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHH--------------------------HHTHHHHHHHHHHHCT-SSHH
T ss_pred HHhcCCccHhHHHHHHHHHHHHhccHHHHHHHH--------------------------HHHHHHHHHHHHHHccCCCeE
Confidence 455566777888888888888877766544322 235555555444555555666
Q ss_pred HHHHHHHHHHHHHcccC---------ChHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhH
Q 007343 389 IARESIRAVGKIALQQY---------DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDC 447 (607)
Q Consensus 389 ~~~~~i~~I~~la~k~~---------~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~ 447 (607)
.+|.+++-+|.+-..-+ +....+..++.+|+.....+.-|+..+++-.+ .+|..-..+
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV-ANp~K~~~I 291 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV-ANPNKPPPI 291 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH-H-SS-BHHH
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH-hCCCCChHH
Confidence 66777777777654322 22346888999999988889999988887444 458765543
No 246
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=39.26 E-value=6.2e+02 Score=28.72 Aligned_cols=448 Identities=14% Similarity=0.140 Sum_probs=222.1
Q ss_pred CChHHHHHHHHHHHHcCCCCH-HHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC-CCCcC
Q 007343 94 NPDLALLTINFLQRDCKDEDP-MIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCI 171 (607)
Q Consensus 94 ~~el~~L~iNtl~kDl~~~n~-~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~-p~~~~ 171 (607)
++++-+++-=++++.+...+| .-.+.+=|-++ ..+|.-+++-.-.++.|..+.|-.-..|+-.++.+.+.. |...-
T Consensus 54 ~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~--~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~w 131 (858)
T COG5215 54 NDQLRMVAGLILKNSLHANDPELQKGCSQRWLG--MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLW 131 (858)
T ss_pred cHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccc
Confidence 344444444455555555444 33445566666 456677777777777788888888888888887776542 33221
Q ss_pred CCCchHHHHHhhcCCCCh-hHHHHHHHHHHHHHhhccccchhhhhhHhhhcch--HHHHHHHh-hc-CCCChhHHHHHHH
Q 007343 172 DADFPPTLKHLMLNDPDP-QVVANCLSALQEIWSLEASTSEEASREREALISK--PVIYYLLN-RI-KEFSEWAQCLVLE 246 (607)
Q Consensus 172 ~~~~~~~L~~lLl~D~d~-~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~--~~~~~Ll~-~l-~~~~~w~qi~iL~ 246 (607)
+++.+.+.+.. .|..| .+...++.++..++.... |. .++.. .++..++. .+ .+++--...-.|+
T Consensus 132 -p~lm~~mv~nv-g~eqp~~~k~~sl~~~gy~ces~~-------Pe--~li~~sN~il~aiv~ga~k~et~~avRLaaL~ 200 (858)
T COG5215 132 -PGLMEEMVRNV-GDEQPVSGKCESLGICGYHCESEA-------PE--DLIQMSNVILFAIVMGALKNETTSAVRLAALK 200 (858)
T ss_pred -hHHHHHHHHhc-cccCchHhHHHHHHHHHHHhhccC-------HH--HHHHHhhHHHHHHHHhhcccCchHHHHHHHHH
Confidence 34444555543 55544 667778888888776431 11 11110 01122221 11 2344444555555
Q ss_pred HHhc---cCC---CChhHHHHHHHHHHHHhccCchHHHHHHHHH---HHhhcC-CcchhHHHHHH-HHHHHHHHHhccCC
Q 007343 247 LVAK---YVP---LDSNEIFDIMNLLEDRLQHANGAVVLSTIKV---FLHLTL-SMTDVHQQVYE-RIKAPLLTLVSSGS 315 (607)
Q Consensus 247 lL~~---~~~---~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~---i~~l~~-~~~~~~~~~~~-~l~~~L~~ll~s~~ 315 (607)
.|.. +.. ..+++..-++.++-+.-+.....+.-+|.-| ++++.- .++. .++ .+...+++++.+..
T Consensus 201 aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~----ymE~aL~alt~~~mks~n 276 (858)
T COG5215 201 ALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQS----YMENALAALTGRFMKSQN 276 (858)
T ss_pred HHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCcc
Confidence 5543 111 1334556677777777777776665444444 444321 2222 222 23444567787777
Q ss_pred chhHHHHHHHHHHHHhhC----------Ccc-ccc-------------ccceeeec-----cCCCHhH---HHHHHHHHH
Q 007343 316 PEQSYAVLSHLHILVMRA----------PFI-FAS-------------DYKHFYCQ-----YNEPSYV---KKLKLEMLT 363 (607)
Q Consensus 316 ~ni~y~~L~~i~~l~~~~----------p~~-~~~-------------~~~~f~~~-----~~d~~~I---k~~kL~iL~ 363 (607)
.++..-+.+.-..+.... |+. .++ .+-.+.|+ ++|+..+ ...-|++-.
T Consensus 277 d~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfa 356 (858)
T COG5215 277 DEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFA 356 (858)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHH
Confidence 777766666555554432 211 011 11122233 2222222 223344444
Q ss_pred HccCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHcccCC---hHHHHHHHHHhh----hhcCchhhHHHHHH
Q 007343 364 AVANESNTYEIVTELCEYAA----NVDIPIARESIRAVGKIALQQYD---VNAIVDRLLQFL----EMEKDYVTAEALVL 432 (607)
Q Consensus 364 ~l~n~~N~~~Iv~eL~~y~~----~~d~~~~~~~i~~I~~la~k~~~---~~~~v~~ll~ll----~~~~~~v~~e~i~~ 432 (607)
.++... |++-.+.|+. +.+-.=+..++-+.|.+-.- |. -+.+|...+.-+ ....-.+.+.....
T Consensus 357 q~~gd~----i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc 431 (858)
T COG5215 357 QLKGDK----IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG-PCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWC 431 (858)
T ss_pred HHhhhH----hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHH
Confidence 444332 3333334443 33444556677788876543 32 134554443332 22111233222222
Q ss_pred HHHHHHh-----CCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCC------------hHHHHHHHHHh---
Q 007343 433 VKDLLRK-----YPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD------------APYILESLTEN--- 492 (607)
Q Consensus 433 i~~i~~~-----~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~------------~~~~l~~l~~~--- 492 (607)
+-.|... .|..+-. ..+..++..-.+.|..-..+.|-.--+.++++. -+.++..++..
T Consensus 432 ~g~iad~va~~i~p~~Hl~--~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~ 509 (858)
T COG5215 432 FGAIADHVAMIISPCGHLV--LEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTEL 509 (858)
T ss_pred HHHHHHHHHHhcCcccccc--HHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHh
Confidence 3333222 2333321 123333333445677777889987777766653 13445544432
Q ss_pred hhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHH-------hhc--CCChhHHhHHHHHHHHccCCHHHHhhhcCC
Q 007343 493 WEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAA-------GLA--DFHQDVHDRALFYHRLLQYNVSVAERVVNP 563 (607)
Q Consensus 493 f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~-------~~~--d~~~dvrdRA~~y~~Ll~~~~~~~~~i~~~ 563 (607)
-..| ...|..+-+|+.-+..-.|..+.+++..+... +.. +.-.+++||+. -..|.+.-......|+-.
T Consensus 510 ~~Ne--~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~-~~elqSN~~~vl~aiir~ 586 (858)
T COG5215 510 ALNE--SNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLL-VEELQSNYIGVLEAIIRT 586 (858)
T ss_pred hccc--hhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 2222 56788888888888877786666655544332 221 12367788876 444444333444555544
Q ss_pred CCCCc
Q 007343 564 PKQAV 568 (607)
Q Consensus 564 ~~p~~ 568 (607)
..|.+
T Consensus 587 ~~~~i 591 (858)
T COG5215 587 RRRDI 591 (858)
T ss_pred cCCCc
Confidence 44434
No 247
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=38.97 E-value=48 Score=30.24 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=18.0
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHH
Q 007343 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLK 161 (607)
Q Consensus 134 ~~l~~~i~~~L~d~~~~VRK~A~lal~k 161 (607)
+.+...+..+|.++++.|+|.|+-|+..
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444455566777777777777777665
No 248
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=38.80 E-value=63 Score=33.54 Aligned_cols=72 Identities=15% Similarity=0.323 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhccCchH-HHHHHHHHHHhhcCCcchhHHHHHH--HHHHHHHHHhccCCchhHHHHHHHHHHHHhh
Q 007343 260 FDIMNLLEDRLQHANGA-VVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 260 ~~il~~l~~~L~~~n~a-Vv~~ai~~i~~l~~~~~~~~~~~~~--~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~ 332 (607)
..++..+...+|+.++. .+.-|..-+.++.-..|+. ..++. .....+.-|++++++++||-||+++..++..
T Consensus 355 y~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 355 YEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 35777888888887654 2222223333332222221 12222 1334456789999999999999999877643
No 249
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=37.85 E-value=1.8e+02 Score=27.10 Aligned_cols=51 Identities=10% Similarity=0.205 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
-+..=+.++|+.+++.. .+.++.+.+.+...++..+ ..=+-.|.++.+..|
T Consensus 37 LG~~IL~~~fk~h~~~r--~~Ile~l~~rI~~~s~~~~-~~~idlL~~lv~~~p 87 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIR--SEILEQLLNRIVTKSSSPS-SQYIDLLSELVRKAP 87 (158)
T ss_dssp HHHHHHHHHHHH-GGGH--HHHHHHHHHHHHH--SS---HHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHhHHHH--HHHHHHHHHHHHhcCccch-hHHHHHHHHHHHHCh
Confidence 44455667777777664 4566666655545544422 334566777766544
No 250
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=37.05 E-value=1.3e+02 Score=37.02 Aligned_cols=106 Identities=13% Similarity=0.066 Sum_probs=78.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC---C
Q 007343 99 LLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI---D 172 (607)
Q Consensus 99 ~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~---~ 172 (607)
.-.-+.+..-+.+..+.+|..|.|+++.+ ...+..-.++..+...+.|.+..|||-++.++..+....-.... .
T Consensus 815 ~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~ 894 (1549)
T KOG0392|consen 815 GSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYN 894 (1549)
T ss_pred hhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccc
Confidence 34457777788899999999998887764 66777888888888999999999999888887766543222110 1
Q ss_pred CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 173 ~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
+=+++.|..++ +|.+.+|+-+|..++..+...
T Consensus 895 ~Llv~pllr~m-sd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 895 PLLVVPLLRRM-SDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred eeehhhhhccc-ccchHHHHHHHHHHHHHHhcc
Confidence 22455566665 888889999998888887654
No 251
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=37.05 E-value=2.9e+02 Score=24.29 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHhhC-CCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 149 SYVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 149 ~~VRK~A~lal~kl~~~~-p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
++||.+.+.++..+...+ |+.- +++++.+.+++ .. ++.-.-..+..|..+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~W--p~~l~~l~~~~-~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQW--PDFLEDLLQLL-QS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHHH-HT-THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhC--chHHHHHHHHh-cc-chhHHHHHHHHHHHHH
Confidence 689999999999998765 8876 57888888875 44 4555555555555554
No 252
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=36.70 E-value=1.7e+02 Score=24.03 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCch---hHHHHHHHHHHhhcCCChhHHhHHHHHHHH
Q 007343 483 PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPE---TQKVLGAALAAGLADFHQDVHDRALFYHRL 549 (607)
Q Consensus 483 ~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~---~~~~~~~~l~~~~~d~~~dvrdRA~~y~~L 549 (607)
.++|+.+..-+...++.+||..+|.++..+...+.+. +.+.+-.++..+..+.+.++-..|+...++
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 3566666666555555899999999999998766533 345677788888888899999999876553
No 253
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=36.00 E-value=2.7e+02 Score=31.06 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=17.9
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHH
Q 007343 357 LKLEMLTAVANESNTYEIVTELCE 380 (607)
Q Consensus 357 ~kL~iL~~l~n~~N~~~Iv~eL~~ 380 (607)
+++.=|..=+|.+|+.+|+.||.+
T Consensus 166 ksInglInkvn~sNi~~ii~eLfq 189 (739)
T KOG2140|consen 166 KSINGLINKVNASNIQEIIRELFQ 189 (739)
T ss_pred HHhHHHHhhhhHHHHHHHHHHHHH
Confidence 444555666788999999999973
No 254
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=35.83 E-value=4.7e+02 Score=26.32 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=69.1
Q ss_pred HHHHHHHHHcccCChHHHHHHHHHhhhhcC--------chhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHH
Q 007343 393 SIRAVGKIALQQYDVNAIVDRLLQFLEMEK--------DYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKA 464 (607)
Q Consensus 393 ~i~~I~~la~k~~~~~~~v~~ll~ll~~~~--------~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~ 464 (607)
.+-++..+|+.- ...+++.++++++..+ |.++.+...++..+....++ .+.+++.+.-.+.=+
T Consensus 59 ~~~a~~LLaq~r--e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~G~~~-------~L~~li~~~~~~~yv 129 (249)
T PF06685_consen 59 HFYALYLLAQFR--EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGDGDIE-------PLKELIEDPDADEYV 129 (249)
T ss_pred HHHHHHHHHHHh--hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhCCCHH-------HHHHHHhCCcHHHHH
Confidence 356666666542 2346788888887654 44555555555544433222 344444222223335
Q ss_pred HHHHHHHHhcccCCCC----ChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCC
Q 007343 465 KAALIWMLGEYSQDMQ----DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADF 535 (607)
Q Consensus 465 ~~~~iwilGEy~~~i~----~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~ 535 (607)
|.+++-.++.-...-+ .....++.+.+.+.......+-..++..++-++ |.|.-+.+.+++....-|.
T Consensus 130 R~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~---~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 130 RMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLY---PEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcC---HHHhHHHHHHHHHcCCCCc
Confidence 5555444443322222 234455666666444432555666666666655 6666677777777655443
No 255
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=35.52 E-value=1.5e+02 Score=34.19 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=24.1
Q ss_pred CChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHh---ccCchHHHHHHHHHHHhh
Q 007343 236 FSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRL---QHANGAVVLSTIKVFLHL 288 (607)
Q Consensus 236 ~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L---~~~n~aVv~~ai~~i~~l 288 (607)
.+.-.++.+|-.++.+. +.-++..+++.+.+++ +...+++++.+++++-.+
T Consensus 441 t~~~vkvn~L~c~~~l~--q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l 494 (700)
T KOG2137|consen 441 TNLYVKVNVLPCLAGLI--QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEAL 494 (700)
T ss_pred cchHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 33334444444444333 2223334444444443 345677777777665543
No 256
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.39 E-value=7.8e+02 Score=28.73 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcC-CCC---h-HHHHHHHHHHHHHHhhCCCCcCCC
Q 007343 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK-DNN---S-YVRTVAVIGVLKLYHISAPTCIDA 173 (607)
Q Consensus 99 ~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~-d~~---~-~VRK~A~lal~kl~~~~p~~~~~~ 173 (607)
.++.|.+|..- .+.++.+--..+....-.++-+.....|...+. -+. | -|=+-++--+..+.+.+++ .
T Consensus 8 ~~If~k~Q~s~---agh~~kl~~k~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e----~ 80 (892)
T KOG2025|consen 8 QLIFNKIQQSD---AGHYSKLLAKVMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKE----E 80 (892)
T ss_pred HHHHHHHHhhh---cchHHHHHHHHHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCch----h
Confidence 45556666532 333555555555444444555555555543321 111 1 2223333333333333333 3
Q ss_pred CchH----HHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHh
Q 007343 174 DFPP----TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVA 249 (607)
Q Consensus 174 ~~~~----~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~ 249 (607)
++++ .+.+. ...+|-.|+...+..+.-+......++. .++++ +..+|+.++.+-.|-..+..+-.|+
T Consensus 81 DlV~~~f~hlLRg-~Eskdk~VRfrvlqila~l~d~~~eidd-------~vfn~-l~e~l~~Rl~Drep~VRiqAv~aLs 151 (892)
T KOG2025|consen 81 DLVAGTFYHLLRG-TESKDKKVRFRVLQILALLSDENAEIDD-------DVFNK-LNEKLLIRLKDREPNVRIQAVLALS 151 (892)
T ss_pred hHHHHHHHHHHhc-ccCcchhHHHHHHHHHHHHhccccccCH-------HHHHH-HHHHHHHHHhccCchHHHHHHHHHH
Confidence 4444 33333 2457889999999888887654333221 12222 4566777788889999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHhccCc-hHHHHHHHHHH
Q 007343 250 KYVPLDSNEIFDIMNLLEDRLQHAN-GAVVLSTIKVF 285 (607)
Q Consensus 250 ~~~~~~~~~~~~il~~l~~~L~~~n-~aVv~~ai~~i 285 (607)
+|.-.+.++-..+.+.+..++++.. +-|..+|...|
T Consensus 152 rlQ~d~~dee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 152 RLQGDPKDEECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred HHhcCCCCCcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 9976555666778899999998754 45655555444
No 257
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=35.08 E-value=3.3e+02 Score=24.27 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=53.4
Q ss_pred ChhHH-HHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcch-hHHHHHH-HHHHHHHHHhcc
Q 007343 237 SEWAQ-CLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYE-RIKAPLLTLVSS 313 (607)
Q Consensus 237 ~~w~q-i~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~-~~~~~~~-~l~~~L~~ll~s 313 (607)
.+|.. ..+-+.+.. .+ ......+..+...|++.|+.|.+-|..++-.+..+-.. ++.++.. ..-.-|..++..
T Consensus 16 ~D~~~il~icd~I~~-~~---~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~ 91 (133)
T cd03561 16 PDWALNLELCDLINL-KP---NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKN 91 (133)
T ss_pred ccHHHHHHHHHHHhC-CC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCC
Confidence 44644 444555542 23 34456778889999999999999998877655544322 4333322 112224555543
Q ss_pred ---CCchhHHHHHHHHHHHHhh
Q 007343 314 ---GSPEQSYAVLSHLHILVMR 332 (607)
Q Consensus 314 ---~~~ni~y~~L~~i~~l~~~ 332 (607)
.+++++--+++.+......
T Consensus 92 ~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 92 SPKYDPKVREKALELILAWSES 113 (133)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 3556676666666555544
No 258
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=34.68 E-value=1.2e+02 Score=31.00 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=35.2
Q ss_pred HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC
Q 007343 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (607)
Q Consensus 130 ~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~ 169 (607)
.+..+-++|++..++.|.++.+|..++.++.++....|..
T Consensus 114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~ 153 (282)
T PF10521_consen 114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA 153 (282)
T ss_pred HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh
Confidence 4567889999999999999999999999999999876654
No 259
>PF14961 BROMI: Broad-minded protein
Probab=33.37 E-value=1e+03 Score=29.68 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcC--CchhHHHHHHHHHHhhcCCChhHHhHHHH-HHHHccCCH
Q 007343 483 PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR--PPETQKVLGAALAAGLADFHQDVHDRALF-YHRLLQYNV 554 (607)
Q Consensus 483 ~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~--p~~~~~~~~~~l~~~~~d~~~dvrdRA~~-y~~Ll~~~~ 554 (607)
.+-+..++++.....+.+||...+..+.|..... ..|..+.+.+-|..+..|.|+.+.|++.. |.++++..|
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
Confidence 5566888888766644999999999988876432 23567888888999999999999999965 778888763
No 260
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=32.89 E-value=6.3e+02 Score=26.90 Aligned_cols=199 Identities=16% Similarity=0.091 Sum_probs=99.9
Q ss_pred HhhHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhCCCCcCC--CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc
Q 007343 130 ANLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 130 ~e~~~~l~~~i~~~L~-d~~~~VRK~A~lal~kl~~~~p~~~~~--~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~ 206 (607)
.+..+.+...+...-+ =++..|=.-++.++.++...+|+.+.. ..|.+.+...+ -+....+...|..++.++...-
T Consensus 128 ~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l-~~~~k~ir~~a~~l~~~~~~~l 206 (372)
T PF12231_consen 128 SDRVERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDL-LSSAKDIRTKAISLLLEAKKCL 206 (372)
T ss_pred hhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHh
Confidence 3444444444433322 245566677888888888889887632 34888888775 5677778887777777765321
Q ss_pred cccchhhhhhHhh-----hcchHHHHH----HHhhcCC---CChhHH--HHHHHHHhccCCCChhHHHHHHHHHHHHhcc
Q 007343 207 ASTSEEASREREA-----LISKPVIYY----LLNRIKE---FSEWAQ--CLVLELVAKYVPLDSNEIFDIMNLLEDRLQH 272 (607)
Q Consensus 207 ~~~~~~~~~~~~~-----li~~~~~~~----Ll~~l~~---~~~w~q--i~iL~lL~~~~~~~~~~~~~il~~l~~~L~~ 272 (607)
+. +......... +.+...+.. |-..+.+ .-.|.| ..++.+|+.-....-+.....+.+....+++
T Consensus 207 ~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~ 285 (372)
T PF12231_consen 207 GP-NKELSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNS 285 (372)
T ss_pred Ch-hHHHHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcC
Confidence 11 1111110000 111101111 1111211 112222 1222333211122233445566677777888
Q ss_pred CchHHHHHHHHH---HHhhcCCcchhHHHHHHHHHHHHHHHhcc-CCc----hhHHHHHHHHHHHH
Q 007343 273 ANGAVVLSTIKV---FLHLTLSMTDVHQQVYERIKAPLLTLVSS-GSP----EQSYAVLSHLHILV 330 (607)
Q Consensus 273 ~n~aVv~~ai~~---i~~l~~~~~~~~~~~~~~l~~~L~~ll~s-~~~----ni~y~~L~~i~~l~ 330 (607)
.++++..+|..+ +++.....+.-....++-+..|+..-+.. ..+ +++..++..+..++
T Consensus 286 ~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 286 SDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 999988777754 55543322222223445566676555542 233 55666666665554
No 261
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=32.67 E-value=79 Score=30.00 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=40.0
Q ss_pred ccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHH
Q 007343 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRT 153 (607)
Q Consensus 91 ~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK 153 (607)
....|+- +..-|..... .||.||.-|+|+|-+....++.-++-.-|+.+=-|...||++
T Consensus 66 ~pi~p~~---ALell~~~y~-~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~~~l~~ 124 (175)
T cd00871 66 APVSPVQ---ALSLFTPQYP-GHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKMGYVEE 124 (175)
T ss_pred CCCCHHH---HHHHhCcccC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccchHHH
Confidence 3444543 4444444433 489999999999999999998887777665554566555554
No 262
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.01 E-value=5.9e+02 Score=26.27 Aligned_cols=181 Identities=17% Similarity=0.199 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHHhcCC--Ccch----hhhh-hh-hhccCCC-chhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCC
Q 007343 42 DSKRELFKKVISYMTIGI--DVSA----VFGE-MV-MCSATSD-IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDE 112 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~--d~s~----lf~~-vi-~l~~s~~-~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~ 112 (607)
.+..+.+...+..|..+. .+.. -|++ .- -...+++ |-..|+-|+.+.+.++ |.. --++.+.+|.-
T Consensus 27 l~~L~~i~~~l~~l~~~~~~~i~~~~W~~~Fd~~WPlv~~~~~~yW~~R~~Fl~lLn~~~--p~~--y~~~~~~~DYf-- 100 (292)
T PF13929_consen 27 LDPLKSIVSTLSQLPQSTEKKINIENWKKFFDSHWPLVDPSETAYWSLRLKFLKLLNIAD--PQN--YSVRRFINDYF-- 100 (292)
T ss_pred hHHHHHHHHHHHhCccccccccCHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHhhcC--ccc--CCHHHHHHHHH--
Confidence 456667777777776665 3321 1222 22 2345566 8899999988888874 332 12333333321
Q ss_pred CHHHHHHHHHHhhc-CChHhhHHHHHHHHhhhcCCCC----hHHHH-HHHHHHHHHHhh-CCC--CcCCCCchHHHHHhh
Q 007343 113 DPMIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNN----SYVRT-VAVIGVLKLYHI-SAP--TCIDADFPPTLKHLM 183 (607)
Q Consensus 113 n~~ir~lALr~l~~-i~~~e~~~~l~~~i~~~L~d~~----~~VRK-~A~lal~kl~~~-~p~--~~~~~~~~~~L~~lL 183 (607)
+.=+++|+ +...++++.+--.+.+...+++ ..|++ +-+.-.+++|+. +|+ .+.+++.+..|.+-|
T Consensus 101 ------~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sM 174 (292)
T PF13929_consen 101 ------LLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSM 174 (292)
T ss_pred ------HHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHH
Confidence 12233343 4556777766666666666665 67844 667778889984 676 666677776665554
Q ss_pred cCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHH
Q 007343 184 LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLE 246 (607)
Q Consensus 184 l~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~ 246 (607)
..|++. -+.+++|+...= +..+..-.+++++..+++.|.+..+|-...-+-
T Consensus 175 v~~~~~-----~l~alYEvV~~l-------~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW 225 (292)
T PF13929_consen 175 VIDENT-----KLNALYEVVDFL-------VSTFSKSLTRNVIISILEILAESRDWNKLFQFW 225 (292)
T ss_pred Hhcccc-----chhhHHHHHHHH-------HhccccCCChhHHHHHHHHHHhcccHHHHHHHH
Confidence 454444 334455554320 001111233456677777777788887654443
No 263
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=31.88 E-value=1.7e+02 Score=25.96 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=56.3
Q ss_pred CCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCC----CCHHHHHHHHHHhhcCChHhhH
Q 007343 58 GIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKD----EDPMIRGLALRSLCSLRVANLV 133 (607)
Q Consensus 58 G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~----~n~~ir~lALr~l~~i~~~e~~ 133 (607)
....+.++.+++++++++ .....++...+. .+-.++.+ .-..-|...++..-.-..+.+.
T Consensus 21 P~~Wp~~l~~l~~~~~~~-~~~~~~~L~iL~---------------~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~ 84 (148)
T PF08389_consen 21 PQQWPDFLEDLLQLLQSS-PQHLELVLRILR---------------ILPEEITDFRRSSLSQERRRELKDALRSNSPDIL 84 (148)
T ss_dssp TTTSTTHHHHHHHHHHTT-HHHHHHHHHHHH---------------HHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCchHHHHHHHHhccc-hhHHHHHHHHHH---------------HHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHH
Confidence 456667888999888774 222222332333 33333332 1223333333332221244555
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC-CCCcCCCCchHHHHHhh
Q 007343 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHLM 183 (607)
Q Consensus 134 ~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~-p~~~~~~~~~~~L~~lL 183 (607)
+.+...+...-...++.+.+++.-|+.....-- ++.+...++++.+.++|
T Consensus 85 ~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l 135 (148)
T PF08389_consen 85 EILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL 135 (148)
T ss_dssp HHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc
Confidence 555444444333333888899999888876532 22333345677777764
No 264
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=30.75 E-value=4e+02 Score=28.78 Aligned_cols=79 Identities=16% Similarity=0.323 Sum_probs=48.8
Q ss_pred HHHHhcccCCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhh-cCCchhHHHHHHH---HHHhhcCCChhHHhHH
Q 007343 469 IWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFF-KRPPETQKVLGAA---LAAGLADFHQDVHDRA 543 (607)
Q Consensus 469 iwilGEy~~~i~~-~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~-~~p~~~~~~~~~~---l~~~~~d~~~dvrdRA 543 (607)
.+++-+|.+.-+. ++.+++.+.+-|.... .....++|.-+--++= ..|++.+.....+ +..|.+|.+.-|-+||
T Consensus 283 aYcivQfveKd~kl~~~VIrglLK~WP~tn-S~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEra 361 (457)
T KOG2085|consen 283 AYCIVQFVEKDPKLTETVIRGLLKYWPKTN-SSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERA 361 (457)
T ss_pred ceeeeeeeccCccccHHHHHHHHHhcCCCC-CcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHH
Confidence 4455555543332 6778888888887765 3334444444444332 3455555544444 3456778899999999
Q ss_pred HHHHH
Q 007343 544 LFYHR 548 (607)
Q Consensus 544 ~~y~~ 548 (607)
.+||+
T Consensus 362 L~~wn 366 (457)
T KOG2085|consen 362 LYLWN 366 (457)
T ss_pred HHHHh
Confidence 99996
No 265
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=30.44 E-value=4.8e+02 Score=24.81 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=66.8
Q ss_pred HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCCh----hHHHHHHHHHHHHHhh
Q 007343 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP----QVVANCLSALQEIWSL 205 (607)
Q Consensus 130 ~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~----~V~~~a~~~L~ei~~~ 205 (607)
++++..++..|.+....+-.-||-.|..++.++....-..+..-.-.+.|.+....+... ..-..++..+..+...
T Consensus 2 ~~~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~~ 81 (193)
T PF12612_consen 2 PELVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLLDL 81 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHhcc
Confidence 567777788888877788889999999999999843311111111234555543222211 1122223333333211
Q ss_pred ccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccC---CCChhHHHHHHHHHHHHhc
Q 007343 206 EASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV---PLDSNEIFDIMNLLEDRLQ 271 (607)
Q Consensus 206 ~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~---~~~~~~~~~il~~l~~~L~ 271 (607)
+ -...+++.-|+-.++..+|-+....-..|..|. ..+++....+.+.+...++
T Consensus 82 ~-------------~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~ 137 (193)
T PF12612_consen 82 P-------------EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILK 137 (193)
T ss_pred H-------------HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 0 011234445555555666666655555555554 2344444555555555554
No 266
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.24 E-value=7e+02 Score=29.02 Aligned_cols=100 Identities=17% Similarity=0.089 Sum_probs=64.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChH---hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc---CCC
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVA---NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDA 173 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~---e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~---~~~ 173 (607)
..+|.+..=.-+.+. ..|+..|++++.| ++... +-..+.. +--|-.|+.-+..+.+..|..+ .+.
T Consensus 39 ~l~~~l~~y~~~t~s---~~~~~il~~~~~P~~K~~~~~----l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t 109 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNS---QRALEILVGVQEPHDKHLFDK----LNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQT 109 (668)
T ss_pred HHHHHHHHHHhhcCc---HHHHHHHHhcCCccHHHHHHH----HHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcC
Confidence 345555544333332 2466777777766 33333 3334433 3467777777778888777654 234
Q ss_pred CchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 007343 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (607)
Q Consensus 174 ~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~ 208 (607)
.+++.|.++|..|.++.|+..|+.+|..+..+-|.
T Consensus 110 ~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 110 PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 56666667767899999999999999999877664
No 267
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=29.16 E-value=7.7e+02 Score=26.78 Aligned_cols=359 Identities=14% Similarity=0.139 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChh
Q 007343 111 DEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (607)
Q Consensus 111 ~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~ 190 (607)
..|+.....-+.-++.+..++..+++..-+-..|+.....++ +.+.+...+. +..|...+.- | .+.|..
T Consensus 61 ~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k---~~~~~~fl~l-l-~r~d~~ 129 (442)
T KOG2759|consen 61 ANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLK---RTEWLSFLNL-L-NRQDTF 129 (442)
T ss_pred cccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhh---ccchHHHHHH-H-hcCChH
Confidence 345566667777888888888888888877777665433322 2233333332 2346666643 3 677776
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHH--HHHHHHHhccCCCChhHHH---HHHHH
Q 007343 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQ--CLVLELVAKYVPLDSNEIF---DIMNL 265 (607)
Q Consensus 191 V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~q--i~iL~lL~~~~~~~~~~~~---~il~~ 265 (607)
.+.-+...+..+..-.+..- ...... +-...+..+++. ...+...+ +.+|+.+.+..+- +.++ +=...
T Consensus 130 iv~~~~~Ils~la~~g~~~~---~~~e~~-~~~~~l~~~l~~-~~~~~~~~~~~rcLQ~ll~~~ey--R~~~v~adg~~~ 202 (442)
T KOG2759|consen 130 IVEMSFRILSKLACFGNCKM---ELSELD-VYKGFLKEQLQS-STNNDYIQFAARCLQTLLRVDEY--RYAFVIADGVSL 202 (442)
T ss_pred HHHHHHHHHHHHHHhccccc---cchHHH-HHHHHHHHHHhc-cCCCchHHHHHHHHHHHhcCcch--hheeeecCcchh
Confidence 66534444444433221100 000000 101123333333 12333333 3345544443211 1110 00122
Q ss_pred HHHHh--ccCchHHHHHHHHHHHhhcCCcchhHHHHHH--HHHHHHHHHhccC-CchhHHHHHHHHHHHHhhCCcccccc
Q 007343 266 LEDRL--QHANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPFIFASD 340 (607)
Q Consensus 266 l~~~L--~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~--~l~~~L~~ll~s~-~~ni~y~~L~~i~~l~~~~p~~~~~~ 340 (607)
+...+ .+.+-=+.|+.+-|+..++-+ +... +.+. .+.+.|...+..+ ..-+--+++..+..++.+.
T Consensus 203 l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~a-e~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~------- 273 (442)
T KOG2759|consen 203 LIRILASTKCGFQLQYQSIFCIWLLTFN-PHAA-EKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKG------- 273 (442)
T ss_pred hHHHHhccCcchhHHHHHHHHHHHhhcC-HHHH-HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------
Confidence 22333 223445778888887777643 2221 1111 1122233333321 1111122222222233222
Q ss_pred cceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcc---cCChHHHH-HHHHH
Q 007343 341 YKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQ---QYDVNAIV-DRLLQ 416 (607)
Q Consensus 341 ~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k---~~~~~~~v-~~ll~ 416 (607)
++.+.|. ++...|. ..++...++-|.+- .=+|+++..++-.--..+... +.....|. +....
T Consensus 274 ---------~~~~~~k---~~~~~mv-~~~v~k~l~~L~~r-kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG 339 (442)
T KOG2759|consen 274 ---------PDRETKK---DIASQMV-LCKVLKTLQSLEER-KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSG 339 (442)
T ss_pred ---------chhhHHH---HHHHHHH-hcCchHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhC
Confidence 1222222 2222221 12344445444322 225666665543333333332 22222232 22233
Q ss_pred hhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCChHHHHHHH------H
Q 007343 417 FLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESL------T 490 (607)
Q Consensus 417 ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~~l------~ 490 (607)
.|.=+..|.....|.- ++-+-+.+.+ .++.++.+++ +.-.||...++++.=||||..+.|....+++.+ .
T Consensus 340 ~L~WSP~Hk~e~FW~e--Na~rlnenny-ellkiL~~lL-e~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM 415 (442)
T KOG2759|consen 340 RLEWSPVHKSEKFWRE--NADRLNENNY-ELLKILIKLL-ETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVM 415 (442)
T ss_pred CcCCCccccccchHHH--hHHHHhhccH-HHHHHHHHHH-hcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHH
Confidence 4444455666666652 2222222222 3455566664 555689999999999999999999887777654 3
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHhhc
Q 007343 491 ENWEEEPSAEVRLHLLTAVMKCFFK 515 (607)
Q Consensus 491 ~~f~~e~~~~vk~~iLta~~Kl~~~ 515 (607)
+...-++ ++||...|.|+=|+...
T Consensus 416 ~Llnh~d-~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 416 NLLNHED-PEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHhcCCC-chHHHHHHHHHHHHHhh
Confidence 4444455 99999999998887643
No 268
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.03 E-value=3.5e+02 Score=32.41 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=56.5
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHH---hhCCCCcC---CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 007343 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY---HISAPTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (607)
Q Consensus 131 e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~---~~~p~~~~---~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~ 204 (607)
+|+..+....+..|+|++-.+|=+|+.++.-.. ..+++.+. ...|...+..+ .+.||.++.-|+..+..++.
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~--~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECL--LCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHH--hcCchHHHHHHHHHHHHHHH
Confidence 467777777888999999999999998876532 34455432 23576666664 67899999999999999988
Q ss_pred hccc
Q 007343 205 LEAS 208 (607)
Q Consensus 205 ~~~~ 208 (607)
..++
T Consensus 877 ~sgD 880 (1014)
T KOG4524|consen 877 YSGD 880 (1014)
T ss_pred Hhhh
Confidence 7654
No 269
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.58 E-value=3.4e+02 Score=31.39 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHH
Q 007343 354 VKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (607)
Q Consensus 354 Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i 433 (607)
.+...++-|..|-++.++ .+|+.+++.. |.+.-....++.| +++.|+++++..+...-...=.+-+...+
T Consensus 541 ~~~~v~~Yl~~l~~kr~~---~~~~~~~i~~-d~~~~~~~f~~~~------~~~~~~~~~~~~l~el~~~~d~d~~~~~~ 610 (667)
T KOG2286|consen 541 SLELVIEYLRALSKKRAS---IQELIEKIKS-DAETLYHFFRKYG------SDVDTLISTISTLAELISLQDPDLIKLEV 610 (667)
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHHHh-hHHHHHHHHHHhC------cchhhhhhhhHHHHHHHhcCChHHHHHHH
Confidence 344445555555555555 2255555432 2222222222222 24677777766554432211122223456
Q ss_pred HHHHHhCCCCchhHHHHHHhhhhccCCchHHHH
Q 007343 434 KDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKA 466 (607)
Q Consensus 434 ~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~ 466 (607)
..++..||+...+.+..+-++ ..+++..+.|.
T Consensus 611 ~~l~~~YpD~~~~~l~~il~~-R~dls~~~~k~ 642 (667)
T KOG2286|consen 611 STLLECYPDIPKDHLEAILKI-RGDLSRSEKKK 642 (667)
T ss_pred HHHHHHCCCCcHHHHHHHHHH-hcCCCHHHHHH
Confidence 788899999987744433333 46776666655
No 270
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=28.51 E-value=1.1e+02 Score=29.88 Aligned_cols=131 Identities=14% Similarity=-0.016 Sum_probs=75.8
Q ss_pred hhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC--ChHhhHHHHHHHHhhhcCC
Q 007343 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKD 146 (607)
Q Consensus 69 i~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i--~~~e~~~~l~~~i~~~L~d 146 (607)
-.+.+++-.+.+-++-.++......-.+..+-.+-.+..+. +.=..+=++|-+.+|.+ ..++. .+.+.+-..|
T Consensus 52 ~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~-~~Wd~vD~~~~~i~g~~~~~~~~~----~~~l~~W~~s 126 (208)
T cd07064 52 LELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTK-SWWDTVDSLAKVVGGILLADYPEF----EPVMDEWSTD 126 (208)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC-chHHHHHHHHHHHhHHHHhCChhH----HHHHHHHHcC
Confidence 35777777777777776666654333332222222233331 22134445565555542 23332 3445667788
Q ss_pred CChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc
Q 007343 147 NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (607)
Q Consensus 147 ~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~ 209 (607)
++.++||.|+.+..+.-+ ..+. ..+...+..+ +.|++-.|.-+.==+|-++++.+|+-
T Consensus 127 ~~~W~rR~ai~~~l~~~~-~~~~---~~l~~~~~~~-~~d~e~fI~KAiGW~LRe~~k~d~~~ 184 (208)
T cd07064 127 ENFWLRRTAILHQLKYKE-KTDT---DLLFEIILAN-LGSKEFFIRKAIGWALREYSKTNPDW 184 (208)
T ss_pred CcHHHHHHHHHHHHHHHH-ccCH---HHHHHHHHHh-CCChHHHHHHHHHHHHHHHhccCHHH
Confidence 899999999888766433 2221 2334445555 58888888777777788888777753
No 271
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.37 E-value=1.3e+02 Score=25.86 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=26.7
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHhhCCccccccc
Q 007343 306 PLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (607)
Q Consensus 306 ~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~ 341 (607)
.|..-+.++++++.+-+|..+..++.+.+.-|..++
T Consensus 41 ~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i 76 (115)
T cd00197 41 AIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEV 76 (115)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 344445567899999999999999998876555443
No 272
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=28.17 E-value=2.1e+02 Score=27.33 Aligned_cols=95 Identities=20% Similarity=0.315 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q 007343 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lAL 121 (607)
..-++.+++-=+.. .+. +..++.++..+.-.+....+-+|-.+......+|+. +..-|.....| +.||.-|+
T Consensus 27 ~~ek~~lW~~R~~l-~~~--p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~---AL~LL~~~f~~--~~VR~yAv 98 (184)
T PF00613_consen 27 EEEKELLWKYRYYL-MNN--PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPED---ALELLSPNFPD--PFVRQYAV 98 (184)
T ss_dssp HHHHHHHHHTHHHH-TTS--GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHH---HHHCTSTT-----HHHHHHHH
T ss_pred HHHHHHHHHCCHHh-hhC--chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHH---HHHHHHhhccH--HHHHHHHH
Confidence 34466666655433 333 345777778888888888888888887777666654 34444445554 99999999
Q ss_pred HHhhcCChHhhHHHHHHHHhhhcC
Q 007343 122 RSLCSLRVANLVEYLVGPLGLGLK 145 (607)
Q Consensus 122 r~l~~i~~~e~~~~l~~~i~~~L~ 145 (607)
+.|.+....++.-++..-| ++|.
T Consensus 99 ~~L~~~~d~~l~~yLpQLV-QaLr 121 (184)
T PF00613_consen 99 RRLESLSDEELLFYLPQLV-QALR 121 (184)
T ss_dssp HHHCTS-HHHHHHHHHHHH-HHGG
T ss_pred HHHHHcCchHHHHHHHHHH-HHhe
Confidence 9999988877766555444 4443
No 273
>PRK12495 hypothetical protein; Provisional
Probab=27.88 E-value=62 Score=31.60 Aligned_cols=43 Identities=21% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchh
Q 007343 11 PSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAV 64 (607)
Q Consensus 11 ~~~~~~~~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~l 64 (607)
||||... -|-.+||.++.. +++|+++.+|+--++..|--|+..
T Consensus 1 MSDFDkE--aEREkLREKye~---------d~~~R~~~~~ma~lL~~gatmsa~ 43 (226)
T PRK12495 1 MSDFDKE--AEREKLREKYEQ---------DEQKREATERMSELLLQGATMTNA 43 (226)
T ss_pred CCchhHH--HHHHHHHHHHhh---------hHHHHHHHHHHHHHHHhhcccchh
Confidence 6776544 366677777774 367999999999999999887743
No 274
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=27.77 E-value=4.8e+02 Score=23.96 Aligned_cols=129 Identities=9% Similarity=0.030 Sum_probs=72.2
Q ss_pred CCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHh-hcCCCChhHHHHHHHHHhccCCCChhHHH----
Q 007343 186 DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN-RIKEFSEWAQCLVLELVAKYVPLDSNEIF---- 260 (607)
Q Consensus 186 D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~-~l~~~~~w~qi~iL~lL~~~~~~~~~~~~---- 260 (607)
...+.|+..|..++..+.+..++... ..+...++ .+.+.+.=..+.++..++...|..|+-..
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~------------~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~ 83 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFK------------EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFL 83 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCC
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHH------------HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHh
Confidence 45667888888888777543322110 11222222 22222222778888888888888776543
Q ss_pred --HHHHHHHHHhc--cCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhc-cCCch-hHHHHHHHHH
Q 007343 261 --DIMNLLEDRLQ--HANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS-SGSPE-QSYAVLSHLH 327 (607)
Q Consensus 261 --~il~~l~~~L~--~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~-s~~~n-i~y~~L~~i~ 327 (607)
.+++.+.++.+ +.+..+...+++++..-... ..-...+.+...+.|..+.. +++.. +|..++-.+.
T Consensus 84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 84 SEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 35677777777 67788888888888765543 22112222333444555563 33333 6766665544
No 275
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=26.91 E-value=4.2e+02 Score=22.95 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcCCh-----HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC
Q 007343 97 LALLTINFLQRDCK-DEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS 166 (607)
Q Consensus 97 l~~L~iNtl~kDl~-~~n~~ir~lALr~l~~i~~-----~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~ 166 (607)
...-+..++.+-+. +.++-.|.-|..-++.+.. +++++.++..+.+.....+. .+.|++|+..+++..
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 33456678888888 7788888888887777643 56777777777666555554 788999999999755
No 276
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=26.84 E-value=1.7e+02 Score=25.04 Aligned_cols=57 Identities=12% Similarity=0.293 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcccCChHH------HHHHHHHhh--hhcCchhhHHHHHHHHHHHHhCCCCch
Q 007343 389 IARESIRAVGKIALQQYDVNA------IVDRLLQFL--EMEKDYVTAEALVLVKDLLRKYPQWSH 445 (607)
Q Consensus 389 ~~~~~i~~I~~la~k~~~~~~------~v~~ll~ll--~~~~~~v~~e~i~~i~~i~~~~p~~~~ 445 (607)
|++.+|+.||.++-+.+.+.. -+..+++.- +..++++.+-++..+|+++..+|+-++
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~ 66 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQE 66 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 678899999999977665321 244555542 334568888888899999999998665
No 277
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=26.81 E-value=3.1e+02 Score=23.04 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=40.8
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHcccCC-----hHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHh
Q 007343 380 EYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (607)
Q Consensus 380 ~y~~~~d~~~~~~~i~~I~~la~k~~~-----~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~ 439 (607)
+|+...+ +-+.+++..+-..+.+..+ ...|+.++-.++..+.+|+..| +.++..|+.+
T Consensus 10 ~f~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E-~~RL~~iL~~ 72 (93)
T cd00238 10 EFVDASD-EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKE-LARLERLLEK 72 (93)
T ss_pred HHhccch-hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHH-HHHHHHHHhc
Confidence 4655444 4466677777666665532 2468888888888888999999 4778888876
No 278
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=26.47 E-value=83 Score=25.23 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhCC--CCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 152 RTVAVIGVLKLYHISA--PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 152 RK~A~lal~kl~~~~p--~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
.|.|..|+.++..... +.+++.+.++.+.++..+.+..+|++.|+.+|.-|...
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4788888888865322 22334578888888866678889999999999988764
No 279
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.42 E-value=1e+03 Score=27.34 Aligned_cols=62 Identities=16% Similarity=0.242 Sum_probs=37.7
Q ss_pred HHhhcCCCChhHHHHHHHHHhccCCCCh--hHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcC
Q 007343 229 LLNRIKEFSEWAQCLVLELVAKYVPLDS--NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (607)
Q Consensus 229 Ll~~l~~~~~w~qi~iL~lL~~~~~~~~--~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~ 290 (607)
++..+.++..-.-..+++.+..+...+. .-+..++..+..+++..|.-|.-+++.+++.+..
T Consensus 329 ~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLri 392 (704)
T KOG2153|consen 329 VVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLRI 392 (704)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcch
Confidence 3344445545555566666665543332 2344566677777777777777788888877664
No 280
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=3.3e+02 Score=31.36 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=66.4
Q ss_pred HHHHHHhcCCCcch-----hhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHh
Q 007343 50 KVISYMTIGIDVSA-----VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSL 124 (607)
Q Consensus 50 kli~~~~~G~d~s~-----lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l 124 (607)
-=+++..+|.|++. .|.+ ++.-....+||.+=|++..+.-+||.+ -+-.|+.|-..|.+..+--.|+-+|
T Consensus 625 LgiAliAMgeeig~eM~lR~f~h---~l~yge~~iRravPLal~llsvSNPq~--~vlDtLsk~shd~D~eva~naIfam 699 (878)
T KOG2005|consen 625 LGIALIAMGEEIGSEMVLRHFGH---LLHYGEPHIRRAVPLALGLLSVSNPQV--NVLDTLSKFSHDGDLEVAMNAIFAM 699 (878)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHH---HHHcCCHHHHHHHHHHHhhhccCCCcc--hHHHHHHHhccCcchHHHHHHHHHh
Confidence 45677888988753 2333 444566789999999999999999997 5668899999999999999999999
Q ss_pred hcCChHhhHHHHHHHHhh
Q 007343 125 CSLRVANLVEYLVGPLGL 142 (607)
Q Consensus 125 ~~i~~~e~~~~l~~~i~~ 142 (607)
|-++.-...-.+..-+.+
T Consensus 700 GLiGAGTnNARla~mLrq 717 (878)
T KOG2005|consen 700 GLIGAGTNNARLAQMLRQ 717 (878)
T ss_pred ccccCCcchHHHHHHHHH
Confidence 998654443334433433
No 281
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=26.05 E-value=2.1e+02 Score=28.65 Aligned_cols=72 Identities=18% Similarity=0.235 Sum_probs=43.3
Q ss_pred CHhHHHHHHHHHHHcc-CCCCHH------------HHHHHHHHHhhcC-CHHHHHHHHHHHHHHHcccCCh-------HH
Q 007343 351 PSYVKKLKLEMLTAVA-NESNTY------------EIVTELCEYAANV-DIPIARESIRAVGKIALQQYDV-------NA 409 (607)
Q Consensus 351 ~~~Ik~~kL~iL~~l~-n~~N~~------------~Iv~eL~~y~~~~-d~~~~~~~i~~I~~la~k~~~~-------~~ 409 (607)
+.+=++.+||.|.+|+ .+.|++ .++.-|..++... |.-.++-+|.-+..+|.--... +.
T Consensus 137 ~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 137 PLSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 3455666777776665 455554 4445555666554 4555566677777776543321 24
Q ss_pred HHHHHHHhhhhcC
Q 007343 410 IVDRLLQFLEMEK 422 (607)
Q Consensus 410 ~v~~ll~ll~~~~ 422 (607)
+|..|+.+++.+.
T Consensus 217 ~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 217 CISHLIAFIEDAE 229 (257)
T ss_pred hHHHHHHHHHHHH
Confidence 7888888888754
No 282
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=25.97 E-value=1e+02 Score=28.15 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCC
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN 147 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~ 147 (607)
+-+.+..=|.++|+.++.+||.|+...+.+.+.++ -..+.+++.|+
T Consensus 18 l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY-~d~L~~Lldd~ 63 (141)
T PF07539_consen 18 LYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPY-KDNLENLLDDK 63 (141)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhH-HHHHHHHcCcc
Confidence 34566777899999999999999999999888776 46666666653
No 283
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=25.78 E-value=2.4e+02 Score=25.24 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=25.5
Q ss_pred HHHhccCCchhHHHHHHHHHHHHhhCCcccccc
Q 007343 308 LTLVSSGSPEQSYAVLSHLHILVMRAPFIFASD 340 (607)
Q Consensus 308 ~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~ 340 (607)
..=+.+++|++++.+|..+..++.+...-|..+
T Consensus 43 ~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~e 75 (133)
T smart00288 43 KKRLNNKNPHVALLALTLLDACVKNCGSKFHLE 75 (133)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence 334556899999999999999998876655544
No 284
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.70 E-value=2.5e+02 Score=31.42 Aligned_cols=99 Identities=22% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHH--------HcCCCCHHHHHHHHHHhhcC--ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC
Q 007343 99 LLTINFLQR--------DCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (607)
Q Consensus 99 ~L~iNtl~k--------Dl~~~n~~ir~lALr~l~~i--~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~ 168 (607)
.++|..+.. ++++....+..+|+-..+-| +..-=.+.+...+-..+.=.++.+||.--+|..-++-.+|+
T Consensus 595 vl~Iq~lLhv~~e~~~D~~k~~ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQ 674 (881)
T COG5110 595 VLVIQSLLHVKDEFTGDTLKNEEALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQ 674 (881)
T ss_pred HHHHHHHHhccCCCCcccchhhHHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcc
Q ss_pred CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHH
Q 007343 169 TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (607)
Q Consensus 169 ~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei 202 (607)
. ...+.|.+. ..|.|..|..|++.++.-|
T Consensus 675 m----~vfDtL~r~-shd~dl~v~~ntIfamGLi 703 (881)
T COG5110 675 M----NVFDTLERS-SHDGDLNVIINTIFAMGLI 703 (881)
T ss_pred h----HHHHHHHHh-ccccchhHHHHHHHHhhcc
No 285
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=24.91 E-value=3.8e+02 Score=25.59 Aligned_cols=96 Identities=20% Similarity=0.305 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHH
Q 007343 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lAL 121 (607)
..-++.++|-=..... +.+..++.++..+.=++....+=.|-.+..-...+|+- +..-|..... |+.||.-|+
T Consensus 25 ~eek~llW~~R~~~l~--~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~---aL~LL~~~~~--~~~Vr~yAV 97 (184)
T smart00145 25 AEEKDLIWKFRHYYLT--NNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPED---ALELLSPKFP--DPFVRAYAV 97 (184)
T ss_pred HHHHHHHHHChHHHHh--cChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHH---HHHHhCccCC--CHHHHHHHH
Confidence 3455666555533322 22334566666666667776666677777666555554 4444555554 789999999
Q ss_pred HHhhcCChHhhHHHHHHHHhhhcC
Q 007343 122 RSLCSLRVANLVEYLVGPLGLGLK 145 (607)
Q Consensus 122 r~l~~i~~~e~~~~l~~~i~~~L~ 145 (607)
+.|.+..+.++.-++-.-| ++|.
T Consensus 98 ~~L~~~~d~~l~~yLpQLV-QaLr 120 (184)
T smart00145 98 ERLESASDEELLLYLLQLV-QALK 120 (184)
T ss_pred HHHHhCCHHHHHHHHHHHH-HHHH
Confidence 9999999888877665555 4443
No 286
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=24.49 E-value=8.1e+02 Score=25.47 Aligned_cols=87 Identities=22% Similarity=0.179 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcCChHhhHHHHHHHHhhhc-CCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHH
Q 007343 116 IRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVAN 194 (607)
Q Consensus 116 ir~lALr~l~~i~~~e~~~~l~~~i~~~L-~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~ 194 (607)
-|.+....++.+....+.+.+...+...+ .+.+.-+...++-++.+-+....+.+ ....++.+.+-| .|..+.|+..
T Consensus 3 ~r~~~~~~L~~l~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-~~~~~~~~~kGl-~~kk~~vR~~ 80 (339)
T PF12074_consen 3 QRVLHASMLSSLPSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-PKKVVDAFKKGL-KDKKPPVRRA 80 (339)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-CHHHHHHHHHHh-cCCCCcHHHH
Confidence 46666677777665444455554544444 35788888888888888766552222 256778888885 8988889888
Q ss_pred HHHHHHHHHh
Q 007343 195 CLSALQEIWS 204 (607)
Q Consensus 195 a~~~L~ei~~ 204 (607)
-+..+.++..
T Consensus 81 w~~~~~~~~~ 90 (339)
T PF12074_consen 81 WLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHh
Confidence 8888888776
No 287
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=24.45 E-value=1.9e+02 Score=32.34 Aligned_cols=140 Identities=16% Similarity=0.111 Sum_probs=81.0
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHhh-C--CCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchh
Q 007343 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-S--APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (607)
Q Consensus 136 l~~~i~~~L~d~~~~VRK~A~lal~kl~~~-~--p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~ 212 (607)
+.+.+.++|++|+-.|.-.+..++...--. + .+.+.+.++++.|.+++ ...|....++.+-++..+.-.+... .
T Consensus 432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~sKDdaLqans~wvlrHlmyncq~~-e- 508 (743)
T COG5369 432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-MSKDDALQANSEWVLRHLMYNCQKN-E- 508 (743)
T ss_pred hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-hcchhhhhhcchhhhhhhhhcCcch-h-
Confidence 334556778888888877777776654221 1 12223467889998885 6667777877777766554322110 0
Q ss_pred hhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChh-HH-----------HHHHHHHHHHhccCchHHHHH
Q 007343 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN-EI-----------FDIMNLLEDRLQHANGAVVLS 280 (607)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~-~~-----------~~il~~l~~~L~~~n~aVv~~ 280 (607)
.+.++.+--+.+++.-.++++=-.|...+++|+.+.-.+.. |. .-+-..+...+...||.-..+
T Consensus 509 ----kf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~ 584 (743)
T COG5369 509 ----KFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILE 584 (743)
T ss_pred ----hhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhh
Confidence 01112121145666655666656899999999987542211 11 124455666667777765555
Q ss_pred HH
Q 007343 281 TI 282 (607)
Q Consensus 281 ai 282 (607)
.+
T Consensus 585 ~~ 586 (743)
T COG5369 585 GC 586 (743)
T ss_pred hH
Confidence 53
No 288
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=23.85 E-value=5.4e+02 Score=28.19 Aligned_cols=67 Identities=25% Similarity=0.382 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHHHHcccCCh-HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhh
Q 007343 385 VDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS 455 (607)
Q Consensus 385 ~d~~~~~~~i~~I~~la~k~~~~-~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~ 455 (607)
.|..|.+++|.-+.+.+.-.|+. .|-+- +-.+++..|+| +......+++-|++|+-- +|+..+.+++
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlm-iasc~rrsgny--qka~d~yk~~hrkfpedl-dclkflvri~ 704 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLM-IASCFRRSGNY--QKAFDLYKDIHRKFPEDL-DCLKFLVRIA 704 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHH-HHHHHHhcccH--HHHHHHHHHHHHhCccch-HHHHHHHHHh
Confidence 47889999999999999888884 68543 34566666766 456678899999999843 5777776664
No 289
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=23.08 E-value=1e+03 Score=26.07 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=72.7
Q ss_pred HHHHHHhhcC----CCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhc----c-Cch---HHHHHHHHHHHhhcCC-
Q 007343 225 VIYYLLNRIK----EFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ----H-ANG---AVVLSTIKVFLHLTLS- 291 (607)
Q Consensus 225 ~~~~Ll~~l~----~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~----~-~n~---aVv~~ai~~i~~l~~~- 291 (607)
++.+|+..+. .-||+.---++|.+..+...-..-+..+++.+...+. + +|| --+||++.+++.....
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~ 106 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA 106 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence 4455555442 3588888888888887754433444555665555553 3 233 3689999999887543
Q ss_pred cchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCC-cccccccceee
Q 007343 292 MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-FIFASDYKHFY 345 (607)
Q Consensus 292 ~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p-~~~~~~~~~f~ 345 (607)
.++...++-+.+-+++...|+..-.|.---+++.+..++..+| .-+.+.+..++
T Consensus 107 ~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~ 161 (435)
T PF03378_consen 107 DPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLF 161 (435)
T ss_dssp GHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 2322223345667777788876667888889999999999998 33444444433
No 290
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=22.80 E-value=9.2e+02 Score=25.48 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=40.0
Q ss_pred HHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcC----chhhHHHHHHHHH
Q 007343 360 EMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEK----DYVTAEALVLVKD 435 (607)
Q Consensus 360 ~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~----~~v~~e~i~~i~~ 435 (607)
+.+..+..+....++++++..-. .+-+++ |-+.+.+...+.+...+++-++++++... ..-...++..+.+
T Consensus 225 ~~~~~l~~e~~~~qllkd~v~if---Yepl~r--v~k~a~l~~~l~d~q~Fi~DlI~~~~~~~~~~~~~~~~~~V~~~v~ 299 (341)
T PF12825_consen 225 EQMIQLWCEPELTQLLKDLVTIF---YEPLVR--VHKAADLSEALSDFQKFIDDLIKLVEKLRNGSGSSDPFPSVEDFVD 299 (341)
T ss_pred HHHHHHHcChhHHHHHHHHHHHH---HHHHHH--HHHhcCHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHH
Confidence 33444333444555555544311 122222 33444455555555567777777665321 1234566777888
Q ss_pred HHHhCCCC
Q 007343 436 LLRKYPQW 443 (607)
Q Consensus 436 i~~~~p~~ 443 (607)
+++++.+.
T Consensus 300 Ll~rH~~~ 307 (341)
T PF12825_consen 300 LLDRHEQS 307 (341)
T ss_pred HHHHHHHH
Confidence 88876553
No 291
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=22.79 E-value=1.2e+02 Score=29.86 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=28.5
Q ss_pred HHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC
Q 007343 119 LALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (607)
Q Consensus 119 lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~ 168 (607)
+....+...........+.+.+...++|+.++|||.---|+-.+++..|+
T Consensus 138 aiv~~l~~~k~~~~~~~if~i~E~~l~d~e~fV~KAigWaLrq~~k~~~e 187 (222)
T COG4912 138 AIVHQLVYKKKTLDLLEIFEIIELLLGDKEFFVQKAIGWALRQIGKHSNE 187 (222)
T ss_pred HHHHHHHHhcCccchhHHHHHHHHHccChHHHHHHHHHHHHHHHHhhchH
Confidence 33444444433333334566666677777777777776776666664444
No 292
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=22.38 E-value=2.1e+02 Score=20.56 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHh
Q 007343 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMT 56 (607)
Q Consensus 21 e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~ 56 (607)
.=.|||.+|.+.....-|=....|+-+.||+...+.
T Consensus 7 Sd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~~~ 42 (44)
T smart00540 7 SDAELRAELKQYGLPPGPITDTTRKLYEKKLRKLRR 42 (44)
T ss_pred CHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHHHHc
Confidence 346899999987665555334678999999987764
No 293
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=22.09 E-value=1.5e+02 Score=25.34 Aligned_cols=52 Identities=8% Similarity=0.028 Sum_probs=41.2
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHh
Q 007343 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (607)
Q Consensus 131 e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~l 182 (607)
..++.++..+..++.|=+|.||.-|..-+--+.+.+|+.+-...|.+.+...
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f 58 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNF 58 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHH
Confidence 3567788888999999999999999999988899999983235666655544
No 294
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=22.07 E-value=1.2e+03 Score=27.33 Aligned_cols=124 Identities=20% Similarity=0.126 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCC---CChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChh
Q 007343 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLKD---NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (607)
Q Consensus 114 ~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d---~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~ 190 (607)
|.|+.+=+.-|+.-..+.+.|.....|+.+-.- ...|+|...+ ..+.-.+.|.++| .-.|..
T Consensus 517 p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~--------------~kekgl~~l~~ll-~~~~~~ 581 (717)
T KOG1048|consen 517 PSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVF--------------RKEKGLPPLVELL-RNDDSD 581 (717)
T ss_pred HHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhh--------------hhccCccHHHHHH-hcCCch
Confidence 444444445555445555666655555543221 1234444321 1234556777875 666777
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCCh-----hH-HHHHHHHHhccCCCChhHHHH
Q 007343 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSE-----WA-QCLVLELVAKYVPLDSNEIFD 261 (607)
Q Consensus 191 V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~-----w~-qi~iL~lL~~~~~~~~~~~~~ 261 (607)
|+.++..+|..+..+ +....++.+..+..|++.|++..+ |- .+.++..|..+...+..-+.+
T Consensus 582 vv~s~a~~LrNls~d---------~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkd 649 (717)
T KOG1048|consen 582 VVRSAAGALRNLSRD---------IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKD 649 (717)
T ss_pred HHHHHHHHHhhhccC---------chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHH
Confidence 888888888877542 123345666778999999987655 43 344455555544444444433
No 295
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.61 E-value=1.2e+03 Score=26.55 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHh
Q 007343 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS 453 (607)
Q Consensus 374 Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~ 453 (607)
+.+++..++...+++.++. +..+.+.+..-....-|.+.++..|....+.... +..+.+.++++-..+......+.-
T Consensus 199 l~~~i~~~~~~~~d~~~~~-~~~l~k~~C~sehTYlyaQ~lL~~L~~~~~~~~~--~~rlsqELe~~A~~~~~~vt~i~~ 275 (584)
T PF04858_consen 199 LKDSISRFLAAGEDELQEA-IAELKKMCCHSEHTYLYAQALLHELSQESDGGSA--MRRLSQELEREAAKRGHDVTDITL 275 (584)
T ss_pred HHHHHHHHHcCCcHHHHHH-HHHHHHHhhcCCchHHHHHHHHHHHHhccccchH--HHHHHHHHHHHHHHcCCCcHHHHH
Confidence 3444555655555555554 5566655554334445778888777654432111 334444444322111111111111
Q ss_pred hhhccCCchHHHHHHHHHHhc
Q 007343 454 ISSQNVQEPKAKAALIWMLGE 474 (607)
Q Consensus 454 l~~~~~~~~~~~~~~iwilGE 474 (607)
.+...-.+|.+..++.-+++-
T Consensus 276 aL~~s~~~p~a~~ai~smLs~ 296 (584)
T PF04858_consen 276 ALNGSSSYPEACQAIASMLSS 296 (584)
T ss_pred HHhcCccCchHHHHHHHHHhc
Confidence 112233467777777777765
No 296
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.32 E-value=5.4e+02 Score=22.23 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=51.9
Q ss_pred hhHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhH-HHHHHHHHHHHHhhc
Q 007343 131 NLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQV-VANCLSALQEIWSLE 206 (607)
Q Consensus 131 e~~~~l~~~i~~~L~-d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V-~~~a~~~L~ei~~~~ 206 (607)
+++..+.|.+.+++. .+.+..|=.|.+-+..+..+.|=. ++.++.+-+.+.....+.- ...++.++..+++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 567789999999998 888999999999999988765432 3445544444445444333 377888888888765
No 297
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.32 E-value=2e+02 Score=26.72 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=28.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCh
Q 007343 93 VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV 129 (607)
Q Consensus 93 ~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~ 129 (607)
..|++.-...+.++.+ .++.+|--|+|+||-||-
T Consensus 7 ~yP~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGA 40 (160)
T PF11865_consen 7 DYPELLDILLNILKTE---QSQSIRREALRVLGILGA 40 (160)
T ss_pred HhHHHHHHHHHHHHhC---CCHHHHHHHHHHhhhccc
Confidence 3688888888888888 348999999999998765
No 298
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=21.27 E-value=7.5e+02 Score=23.89 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=8.6
Q ss_pred HHHHHhhcCCCChhHHHHHHH
Q 007343 177 PTLKHLMLNDPDPQVVANCLS 197 (607)
Q Consensus 177 ~~L~~lLl~D~d~~V~~~a~~ 197 (607)
+.+.+. ..|+|.-++.+|+.
T Consensus 118 ~~l~~W-~~s~~~W~rR~ai~ 137 (208)
T cd07064 118 PVMDEW-STDENFWLRRTAIL 137 (208)
T ss_pred HHHHHH-HcCCcHHHHHHHHH
Confidence 334444 24445444444443
No 299
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=21.24 E-value=6.2e+02 Score=25.73 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc
Q 007343 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (607)
Q Consensus 298 ~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~ 335 (607)
+.+..+.+++..++.+.++++|.-|++.+..++.+.|.
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~ 152 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA 152 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence 45667889999999999999999999999999987654
No 300
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=20.50 E-value=6.4e+02 Score=22.79 Aligned_cols=79 Identities=9% Similarity=-0.009 Sum_probs=46.7
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcC---ChHhhH-----HHHHHH-HhhhcCC---CChHH
Q 007343 85 LYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL---RVANLV-----EYLVGP-LGLGLKD---NNSYV 151 (607)
Q Consensus 85 L~l~~~~~~~~el~~L~iNtl~kDl~-~~n~~ir~lALr~l~~i---~~~e~~-----~~l~~~-i~~~L~d---~~~~V 151 (607)
+-++-..+..++..--++.+++|-++ ++||.+.-+||..+-.+ +...+- ...... +.+.+.+ .+.-|
T Consensus 23 leicD~In~~~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~V 102 (141)
T cd03565 23 MEICDIINETEDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIV 102 (141)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHH
Confidence 34444444555556788999999998 47998888887765443 222221 233333 4455542 34578
Q ss_pred HHHHHHHHHHHH
Q 007343 152 RTVAVIGVLKLY 163 (607)
Q Consensus 152 RK~A~lal~kl~ 163 (607)
|++.+.-+....
T Consensus 103 k~kil~li~~W~ 114 (141)
T cd03565 103 QEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHH
Confidence 887766555443
No 301
>PF14961 BROMI: Broad-minded protein
Probab=20.46 E-value=2.9e+02 Score=33.95 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=54.0
Q ss_pred HHHHHHcCCCCH-HHHHHHHHHhhcCChH-----hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 103 NFLQRDCKDEDP-MIRGLALRSLCSLRVA-----NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 103 Ntl~kDl~~~n~-~ir~lALr~l~~i~~~-----e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
|.+..-+.-.+| .+|--|+..||+.... |....+...+..+|.|+++.+.-+++--.+|+|...|-.+
T Consensus 164 q~i~d~ld~~~P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl~~ 237 (1296)
T PF14961_consen 164 QLIADKLDPGQPKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSPLNM 237 (1296)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCchhh
Confidence 344444444455 7999999999997544 5578888999999999999999999999999998877654
No 302
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=20.43 E-value=6.7e+02 Score=23.00 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHH
Q 007343 41 DDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLA 120 (607)
Q Consensus 41 ~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lA 120 (607)
....++.+.+.-+..... +...+.+++.+...+....+-.|-.+..-...+|+. +..-|..... |+.||.-|
T Consensus 20 ~~~ek~llw~~R~~~~~~---p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~---aL~LL~~~~~--~~~vr~yA 91 (152)
T cd00864 20 TEEEKELLWKFRYYLLNV---PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPED---ALELLSPKYP--DPVVRQYA 91 (152)
T ss_pred CHHHHHHHHHHHHHHhhC---hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHH---HHHHcCCcCC--CHHHHHHH
Confidence 356778888877766532 345777778777778777777777777766666654 3444444444 49999999
Q ss_pred HHHhhcCChHhhHHHHHHHHh
Q 007343 121 LRSLCSLRVANLVEYLVGPLG 141 (607)
Q Consensus 121 Lr~l~~i~~~e~~~~l~~~i~ 141 (607)
++.+.+....++.-++-.-|+
T Consensus 92 v~~L~~~~~~~l~~ylpQLVQ 112 (152)
T cd00864 92 VRVLESASDDELLLYLPQLVQ 112 (152)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 999999888888776655544
No 303
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.21 E-value=3.4e+02 Score=25.04 Aligned_cols=77 Identities=16% Similarity=0.226 Sum_probs=42.7
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhhcCCc-chhHHHHHHHHHHHHHHHhccCC--chhHHHHHHHHHHHHhhCCcccc
Q 007343 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVSSGS--PEQSYAVLSHLHILVMRAPFIFA 338 (607)
Q Consensus 262 il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~-~~~~~~~~~~l~~~L~~ll~s~~--~ni~y~~L~~i~~l~~~~p~~~~ 338 (607)
+...+...+.+.++.|.-.+.+++..+.... +.++.++=--+...+..+++++. ...|.++|+.+..++ +.|.++.
T Consensus 74 l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~-~~p~~l~ 152 (168)
T PF12783_consen 74 LCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC-KDPQFLV 152 (168)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH-hChhHHH
Confidence 3444444455556777778888877655332 22333321112222333555332 478899999998888 4665443
Q ss_pred c
Q 007343 339 S 339 (607)
Q Consensus 339 ~ 339 (607)
.
T Consensus 153 ~ 153 (168)
T PF12783_consen 153 D 153 (168)
T ss_pred H
Confidence 3
Done!