Query 007343
Match_columns 607
No_of_seqs 235 out of 1406
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 23:24:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 8.6E-95 2.9E-99 817.0 55.5 577 12-606 5-586 (591)
2 2vgl_A Adaptor protein complex 100.0 5.7E-88 2E-92 763.2 43.3 539 19-585 34-618 (621)
3 1w63_A Adapter-related protein 100.0 6.3E-82 2.2E-86 715.0 43.3 535 18-578 32-602 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 2.8E-53 9.7E-58 442.3 13.9 324 15-368 21-354 (355)
5 1b3u_A Protein (protein phosph 99.7 3.5E-16 1.2E-20 174.1 29.0 476 61-550 85-585 (588)
6 4fdd_A Transportin-1; heat rep 99.6 4.4E-13 1.5E-17 156.8 38.5 528 21-556 87-789 (852)
7 1b3u_A Protein (protein phosph 99.6 8.5E-14 2.9E-18 154.7 26.5 507 65-594 12-550 (588)
8 4fdd_A Transportin-1; heat rep 99.6 6.9E-13 2.4E-17 155.1 30.9 402 99-516 12-473 (852)
9 2vgl_B AP-2 complex subunit be 99.5 1.2E-13 4.3E-18 155.0 20.3 417 102-544 15-449 (591)
10 1u6g_C TIP120 protein, CAND1; 99.5 4.3E-12 1.5E-16 154.1 32.7 478 62-550 5-596 (1230)
11 1wa5_B Importin alpha subunit; 99.5 1.5E-11 5.3E-16 135.8 29.0 345 18-403 85-458 (530)
12 1w63_A Adapter-related protein 99.5 9.2E-12 3.1E-16 140.5 26.7 444 53-517 93-579 (618)
13 2bpt_A Importin beta-1 subunit 99.5 4E-10 1.4E-14 131.0 41.4 485 60-547 131-706 (861)
14 4b8j_A Importin subunit alpha- 99.4 3.1E-11 1E-15 133.2 29.3 340 65-441 76-446 (528)
15 2jdq_A Importin alpha-1 subuni 99.4 1.6E-10 5.5E-15 124.0 34.1 339 22-403 22-391 (450)
16 1wa5_B Importin alpha subunit; 99.4 1.7E-11 5.7E-16 135.5 27.0 341 63-441 87-460 (530)
17 2jdq_A Importin alpha-1 subuni 99.4 3.6E-12 1.2E-16 136.9 20.3 331 100-438 20-390 (450)
18 1qgr_A Protein (importin beta 99.4 1.2E-09 4.2E-14 127.2 42.3 495 21-520 87-728 (876)
19 2z6g_A B-catenin; FULL-length, 99.4 1.1E-10 3.6E-15 135.3 30.5 443 101-555 116-625 (780)
20 1oyz_A Hypothetical protein YI 99.4 9.5E-12 3.2E-16 125.6 18.1 196 100-328 23-218 (280)
21 2bpt_A Importin beta-1 subunit 99.4 8.3E-10 2.9E-14 128.3 37.0 438 73-523 15-538 (861)
22 4b8j_A Importin subunit alpha- 99.4 2.9E-10 1E-14 125.3 30.4 371 22-436 76-494 (528)
23 2z6g_A B-catenin; FULL-length, 99.4 3.2E-10 1.1E-14 131.2 31.1 466 65-547 117-658 (780)
24 1jdh_A Beta-catenin; beta-cate 99.3 6.3E-10 2.1E-14 122.1 30.3 436 95-560 12-497 (529)
25 1u6g_C TIP120 protein, CAND1; 99.3 1.2E-09 4.2E-14 132.6 35.4 463 39-516 18-600 (1230)
26 2z6h_A Catenin beta-1, beta-ca 99.3 1.4E-09 4.7E-14 123.2 31.4 443 95-552 9-527 (644)
27 1qgr_A Protein (importin beta 99.3 7E-09 2.4E-13 120.8 36.5 443 67-522 5-545 (876)
28 2vgl_A Adaptor protein complex 99.2 7.2E-09 2.5E-13 116.7 32.4 386 78-494 58-488 (621)
29 3ltm_A Alpha-REP4; protein eng 99.2 3.6E-10 1.2E-14 108.9 18.3 186 101-333 20-205 (211)
30 1ibr_B P95, importin beta-1 su 99.2 1.2E-09 4.1E-14 117.3 23.2 252 102-367 3-288 (462)
31 3ltj_A Alpharep-4; protein eng 99.2 8E-10 2.7E-14 105.6 18.5 183 100-329 14-196 (201)
32 3now_A UNC-45 protein, SD10334 99.2 9.5E-09 3.2E-13 117.6 30.3 401 65-477 248-737 (810)
33 3ul1_B Importin subunit alpha- 99.2 4.7E-09 1.6E-13 115.5 26.4 326 94-440 70-432 (510)
34 1jdh_A Beta-catenin; beta-cate 99.2 2.5E-08 8.6E-13 109.2 32.2 454 64-547 18-525 (529)
35 4hxt_A De novo protein OR329; 99.2 2.8E-09 9.6E-14 104.7 21.7 228 101-336 3-246 (252)
36 2z6h_A Catenin beta-1, beta-ca 99.1 7.2E-08 2.5E-12 109.0 35.0 439 65-518 16-531 (644)
37 1oyz_A Hypothetical protein YI 99.1 2.4E-09 8.1E-14 107.9 20.3 222 65-329 25-248 (280)
38 3tpo_A Importin subunit alpha- 99.1 1.2E-08 4E-13 112.8 25.5 296 136-439 120-450 (529)
39 3ul1_B Importin subunit alpha- 99.1 4.7E-08 1.6E-12 107.5 28.4 329 65-401 59-429 (510)
40 3ltj_A Alpharep-4; protein eng 99.1 6.9E-09 2.4E-13 99.0 19.0 184 63-289 14-197 (201)
41 3ltm_A Alpha-REP4; protein eng 99.1 6.5E-09 2.2E-13 100.0 18.7 185 64-291 20-204 (211)
42 3tpo_A Importin subunit alpha- 99.0 9E-07 3.1E-11 97.6 37.3 337 21-400 77-447 (529)
43 3now_A UNC-45 protein, SD10334 99.0 1.1E-08 3.8E-13 117.1 21.1 398 39-441 259-740 (810)
44 1ibr_B P95, importin beta-1 su 99.0 5.6E-08 1.9E-12 104.2 25.6 378 69-479 7-439 (462)
45 4db8_A Armadillo-repeat protei 98.9 1.3E-08 4.4E-13 100.4 15.1 219 63-289 12-250 (252)
46 4hxt_A De novo protein OR329; 98.9 7.7E-08 2.6E-12 94.2 19.4 218 65-290 4-241 (252)
47 4db8_A Armadillo-repeat protei 98.8 3.4E-08 1.2E-12 97.4 15.0 220 102-329 14-249 (252)
48 4db6_A Armadillo repeat protei 98.7 1.8E-07 6.2E-12 89.4 14.7 186 58-251 7-207 (210)
49 4db6_A Armadillo repeat protei 98.6 6.1E-07 2.1E-11 85.7 15.2 189 134-330 11-208 (210)
50 3b2a_A TON_1937, putative unch 98.5 5E-06 1.7E-10 79.7 18.7 190 174-377 33-228 (265)
51 3tjz_B Coatomer subunit gamma; 98.5 2.7E-06 9.1E-11 88.4 18.3 254 106-423 74-338 (355)
52 1xm9_A Plakophilin 1; armadill 98.5 1.2E-05 3.9E-10 87.1 24.0 332 137-478 4-450 (457)
53 4ady_A RPN2, 26S proteasome re 98.4 0.00026 8.8E-09 81.6 33.4 342 44-420 339-699 (963)
54 1wa5_C Importin alpha RE-expor 98.4 0.00046 1.6E-08 81.4 35.9 356 131-514 81-525 (960)
55 1te4_A Conserved protein MTH18 98.4 1.3E-07 4.4E-12 84.0 3.2 115 66-200 15-129 (131)
56 2qk2_A LP04448P; mini spindles 98.4 5.7E-06 2E-10 81.3 15.4 197 136-342 16-217 (242)
57 1xm9_A Plakophilin 1; armadill 98.4 0.00019 6.3E-09 77.5 28.1 302 22-334 4-409 (457)
58 1te4_A Conserved protein MTH18 98.3 2.7E-07 9.3E-12 81.9 4.0 90 101-204 13-102 (131)
59 3l6x_A Catenin delta-1; cateni 98.3 9.9E-05 3.4E-09 81.7 25.1 333 137-478 50-477 (584)
60 3nmz_A APC variant protein; pr 98.3 7.6E-05 2.6E-09 80.4 23.2 252 154-444 167-456 (458)
61 3l6x_A Catenin delta-1; cateni 98.3 0.0002 6.8E-09 79.2 25.9 312 14-334 42-435 (584)
62 3nmw_A APC variant protein; AR 98.2 3E-05 1E-09 80.9 17.2 219 112-336 96-339 (354)
63 2qk1_A Protein STU2; STU2P, XM 98.1 8.6E-05 3E-09 73.5 17.1 207 140-361 21-244 (249)
64 3nmz_A APC variant protein; pr 98.1 5.5E-05 1.9E-09 81.5 16.8 218 112-335 212-454 (458)
65 2qk2_A LP04448P; mini spindles 98.1 2.8E-05 9.7E-10 76.2 13.2 166 39-205 27-206 (242)
66 1xqr_A HSPBP1 protein; armadil 98.0 6.8E-05 2.3E-09 76.2 15.1 152 138-333 84-240 (296)
67 2x19_B Importin-13; nuclear tr 98.0 0.0008 2.7E-08 79.2 26.2 123 74-204 36-175 (963)
68 2db0_A 253AA long hypothetical 98.0 9.3E-05 3.2E-09 68.2 12.9 212 173-402 31-246 (253)
69 3opb_A SWI5-dependent HO expre 97.9 0.02 6.7E-07 64.8 34.0 443 87-551 160-728 (778)
70 1xqr_A HSPBP1 protein; armadil 97.9 0.00016 5.4E-09 73.5 15.5 148 101-256 82-241 (296)
71 2x1g_F Cadmus; transport prote 97.9 0.005 1.7E-07 72.6 30.4 446 68-529 12-587 (971)
72 2qk1_A Protein STU2; STU2P, XM 97.9 0.00035 1.2E-08 69.0 16.3 137 69-206 22-177 (249)
73 4ady_A RPN2, 26S proteasome re 97.8 0.0037 1.3E-07 72.1 25.2 218 47-290 491-721 (963)
74 2db0_A 253AA long hypothetical 97.8 0.0027 9.1E-08 58.6 19.1 208 104-331 36-246 (253)
75 1wa5_C Importin alpha RE-expor 97.7 0.0047 1.6E-07 72.8 24.5 255 77-342 375-680 (960)
76 3b2a_A TON_1937, putative unch 97.6 0.008 2.7E-07 57.7 19.6 214 304-551 35-260 (265)
77 3opb_A SWI5-dependent HO expre 97.6 0.0062 2.1E-07 68.8 22.1 321 113-438 307-728 (778)
78 3nmw_A APC variant protein; AR 97.5 0.0035 1.2E-07 65.2 17.8 211 76-294 97-338 (354)
79 2x1g_F Cadmus; transport prote 97.4 0.098 3.4E-06 61.4 30.7 171 150-334 436-618 (971)
80 4ffb_C Protein STU2; tubulin f 97.1 0.011 3.6E-07 59.1 15.7 187 140-331 14-212 (278)
81 3m1i_C Exportin-1; heat repeat 97.0 0.28 9.5E-06 58.2 30.1 53 464-517 516-572 (1049)
82 4hat_C Exportin-1; heat repeat 96.8 0.27 9.2E-06 58.1 27.1 116 85-205 438-570 (1023)
83 3u0r_A Apoptosis inhibitor 5; 96.8 0.46 1.6E-05 50.3 25.0 133 65-204 31-163 (507)
84 3a6p_A Exportin-5; exportin-5, 96.7 1.7 5.8E-05 52.3 35.3 123 75-204 25-162 (1204)
85 2x19_B Importin-13; nuclear tr 96.7 1.4 4.8E-05 51.3 40.8 139 100-252 445-598 (963)
86 4ffb_C Protein STU2; tubulin f 96.6 0.016 5.6E-07 57.6 12.9 164 41-205 23-213 (278)
87 3grl_A General vesicular trans 96.5 0.5 1.7E-05 52.1 24.2 308 131-442 21-398 (651)
88 3grl_A General vesicular trans 96.3 0.08 2.7E-06 58.4 16.8 190 137-335 124-346 (651)
89 3m1i_C Exportin-1; heat repeat 96.1 0.69 2.4E-05 54.8 25.2 89 460-550 465-568 (1049)
90 2of3_A ZYG-9; multifunctional 96.0 0.2 6.9E-06 49.4 16.1 187 11-207 25-239 (266)
91 3tt9_A Plakophilin-2; cell adh 96.0 0.12 4.1E-06 50.1 14.3 167 137-312 10-204 (233)
92 3gs3_A Symplekin, LD45768P; he 95.9 0.24 8.2E-06 48.7 16.5 136 42-203 30-172 (257)
93 3ibv_A Exportin-T; karyopherin 95.8 2.1 7.2E-05 50.3 26.5 123 80-206 416-568 (980)
94 3gs3_A Symplekin, LD45768P; he 95.3 0.33 1.1E-05 47.6 14.7 131 116-286 31-169 (257)
95 3l9t_A Putative uncharacterize 95.2 0.59 2E-05 45.0 15.5 139 103-261 74-215 (240)
96 3o2t_A Symplekin; heat repeat, 94.8 0.26 8.7E-06 51.3 13.0 131 116-286 41-179 (386)
97 3ibv_A Exportin-T; karyopherin 94.8 8.6 0.00029 45.1 35.4 152 133-289 87-259 (980)
98 3tt9_A Plakophilin-2; cell adh 94.5 1.2 4.1E-05 43.0 16.2 109 175-291 9-125 (233)
99 1ho8_A Vacuolar ATP synthase s 94.3 6.5 0.00022 41.8 24.4 333 174-515 77-477 (480)
100 3o2t_A Symplekin; heat repeat, 94.1 2.7 9.3E-05 43.5 18.8 84 42-126 40-126 (386)
101 3l9t_A Putative uncharacterize 93.7 0.27 9.2E-06 47.4 9.5 140 59-208 67-211 (240)
102 2iw3_A Elongation factor 3A; a 93.7 6.1 0.00021 46.1 22.5 293 22-332 13-325 (986)
103 1lsh_A Lipovitellin (LV-1N, LV 93.6 0.2 6.8E-06 59.5 10.4 122 76-202 408-541 (1056)
104 2of3_A ZYG-9; multifunctional 92.7 1.6 5.5E-05 42.9 13.6 136 66-206 49-198 (266)
105 3a6p_A Exportin-5; exportin-5, 92.2 24 0.00083 42.2 27.8 92 113-206 26-127 (1204)
106 3u0r_A Apoptosis inhibitor 5; 91.5 0.47 1.6E-05 50.3 8.5 119 112-250 40-160 (507)
107 4hat_C Exportin-1; heat repeat 89.8 36 0.0012 40.0 34.1 86 460-546 465-563 (1023)
108 3gjx_A Exportin-1; transport, 89.6 38 0.0013 39.9 29.4 118 85-207 464-598 (1073)
109 1lsh_A Lipovitellin (LV-1N, LV 89.4 24 0.00083 41.6 21.9 143 128-292 388-545 (1056)
110 2iw3_A Elongation factor 3A; a 87.8 17 0.0006 42.3 18.6 277 78-368 30-328 (986)
111 3oc3_A Helicase MOT1, MOT1; re 87.8 3.4 0.00012 44.8 11.5 228 71-326 182-431 (800)
112 1lrv_A LRV, leucine-rich repea 86.0 0.67 2.3E-05 45.1 4.8 68 105-199 127-194 (244)
113 1lrv_A LRV, leucine-rich repea 85.9 0.61 2.1E-05 45.4 4.4 88 70-197 57-144 (244)
114 4gmo_A Putative uncharacterize 84.7 4.8 0.00016 45.2 11.7 83 464-547 555-660 (684)
115 4gmo_A Putative uncharacterize 84.1 2.3 7.8E-05 47.8 8.7 62 142-205 41-106 (684)
116 3oc3_A Helicase MOT1, MOT1; re 83.4 15 0.00051 39.9 13.7 131 71-203 271-403 (800)
117 3dad_A FH1/FH2 domain-containi 80.7 32 0.0011 34.7 14.6 72 262-334 203-289 (339)
118 3ldz_A STAM-1, signal transduc 75.9 12 0.00042 32.7 8.9 78 82-163 24-113 (140)
119 3jxy_A Alkylpurine DNA glycosy 74.1 16 0.00056 34.7 10.1 89 139-249 135-223 (232)
120 1t06_A Hypothetical protein; s 73.7 3.6 0.00012 39.6 5.2 75 106-182 114-196 (235)
121 2b6c_A Hypothetical protein EF 72.0 7 0.00024 37.1 6.8 151 69-248 61-215 (220)
122 1x5b_A Signal transducing adap 72.0 19 0.00063 32.4 9.3 74 86-163 38-124 (163)
123 1vsy_5 Proteasome activator BL 71.9 4.3 0.00015 47.6 6.2 100 66-166 763-875 (997)
124 3fga_B Serine/threonine-protei 71.4 99 0.0034 32.0 16.9 172 374-547 130-317 (403)
125 1juq_A ADP-ribosylation factor 69.2 28 0.00096 31.5 9.9 98 70-167 20-131 (171)
126 3g2s_A C-terminal fragment of 68.5 53 0.0018 28.9 11.3 100 65-168 12-130 (149)
127 2b6c_A Hypothetical protein EF 68.0 5.9 0.0002 37.6 5.3 67 104-170 128-194 (220)
128 1t06_A Hypothetical protein; s 67.3 35 0.0012 32.5 10.7 69 139-208 112-184 (235)
129 3zyq_A Hepatocyte growth facto 66.5 34 0.0012 32.4 10.4 79 82-163 27-117 (226)
130 1vsy_5 Proteasome activator BL 65.7 22 0.00076 41.6 10.5 119 88-207 831-969 (997)
131 1mhq_A ADP-ribosylation factor 65.4 28 0.00095 30.7 8.8 80 84-163 22-115 (148)
132 3g2s_A C-terminal fragment of 64.1 45 0.0015 29.4 9.9 88 307-417 53-141 (149)
133 3dad_A FH1/FH2 domain-containi 63.7 42 0.0014 33.8 10.7 82 145-235 128-213 (339)
134 1ho8_A Vacuolar ATP synthase s 63.3 10 0.00035 40.2 6.4 71 94-164 393-476 (480)
135 3gjx_A Exportin-1; transport, 61.8 2.5E+02 0.0084 33.1 34.8 87 461-548 492-591 (1073)
136 3ldz_A STAM-1, signal transduc 61.6 37 0.0013 29.5 8.9 73 306-406 46-118 (140)
137 3jxy_A Alkylpurine DNA glycosy 61.1 7 0.00024 37.4 4.3 64 107-170 138-201 (232)
138 2jak_A Serine/threonine-protei 60.0 1.6E+02 0.0055 30.3 15.2 174 374-548 175-363 (392)
139 1dvp_A HRS, hepatocyte growth 59.2 52 0.0018 30.9 10.1 75 84-161 26-112 (220)
140 1mhq_A ADP-ribosylation factor 58.6 53 0.0018 28.9 9.4 35 307-341 43-77 (148)
141 2npp_B PP2A, B subunit, serine 56.0 2E+02 0.0068 30.1 17.3 187 374-561 163-370 (449)
142 1juq_A ADP-ribosylation factor 53.6 62 0.0021 29.2 9.2 35 307-341 55-89 (171)
143 1elk_A Target of MYB1; superhe 52.4 77 0.0026 28.0 9.5 102 58-162 10-128 (157)
144 3ebb_A Phospholipase A2-activa 52.3 1.8E+02 0.0063 28.6 17.9 60 103-162 150-218 (304)
145 1x5b_A Signal transducing adap 49.8 96 0.0033 27.6 9.7 35 307-341 57-91 (163)
146 1upk_A MO25 protein; transfera 39.2 1.9E+02 0.0065 29.1 10.7 111 310-447 172-291 (341)
147 3zyq_A Hepatocyte growth facto 32.8 1.8E+02 0.0063 27.2 9.3 35 307-341 50-84 (226)
148 3qml_C Protein SLS1, nucleotid 32.6 3.6E+02 0.012 26.7 11.4 29 484-514 161-189 (315)
149 1vdy_A Hypothetical protein (R 32.1 77 0.0026 27.6 5.8 69 302-370 49-133 (140)
150 1elk_A Target of MYB1; superhe 31.7 1.3E+02 0.0045 26.5 7.6 52 154-207 35-86 (157)
151 1fyh_A Interferon-gamma; cytok 29.3 3.8E+02 0.013 25.5 11.3 107 409-515 49-184 (258)
152 1upk_A MO25 protein; transfera 28.3 4.6E+02 0.016 26.2 18.5 114 262-400 210-333 (341)
153 3s4w_B Protein FACD2, fanconi 27.7 8.6E+02 0.029 29.1 24.1 64 225-291 158-221 (1323)
154 2kvu_A MKL/myocardin-like prot 25.6 1.8E+02 0.0061 22.4 6.1 39 15-57 24-62 (75)
155 4e9m_A Nucleotide-binding olig 23.2 1.3E+02 0.0046 26.1 5.6 78 354-445 29-108 (144)
156 1h2v_C 80 kDa nuclear CAP bind 23.1 2.3E+02 0.0079 31.9 9.2 74 360-433 14-89 (771)
157 1w9c_A CRM1 protein, exportin 21.1 6.1E+02 0.021 25.1 12.2 87 458-546 88-190 (321)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=8.6e-95 Score=816.96 Aligned_cols=577 Identities=36% Similarity=0.610 Sum_probs=530.3
Q ss_pred CCCCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhc
Q 007343 12 SPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYA 91 (607)
Q Consensus 12 ~~~~~~~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~ 91 (607)
+.|...+|||++|||++|++ ++.++|+++++|++|+|++|+|++++|++++++++++|+++||+||+|+..++
T Consensus 5 ~~f~~~~~~e~~~i~~~L~~-------~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~ 77 (591)
T 2vgl_B 5 KYFTTNKKGEIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYA 77 (591)
T ss_dssp CTTCCCSSSHHHHHHHHTTS-------SCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred hhcccccCChHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence 46778889999999999997 55689999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC
Q 007343 92 KVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI 171 (607)
Q Consensus 92 ~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~ 171 (607)
+.+||++++++|+++||++|+||.+|++||++||+++.+++.+.+.+++++++.|++|||||+|+.|+.++|+.+|+.+.
T Consensus 78 ~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 78 KSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp HHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 007343 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (607)
Q Consensus 172 ~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~ 251 (607)
+.+|++.+.++| +|+|++|+.+|+.+|.++++.+|+.. ..-+.++.+.+|++.+.+++||+|++++++++.|
T Consensus 158 ~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~-------~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 158 DQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSN-------LLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp HHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCC-------SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCcc-------chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 457999999985 99999999999999999998776420 0112234688899888899999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCC---cchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q 007343 252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS---MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (607)
Q Consensus 252 ~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~---~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~ 328 (607)
+|.++++...+++.+.+.++|.|++|+++|+++++++... .++....+++++.++|+.+++ +++|+||+||+++..
T Consensus 230 ~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 230 NPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINL 308 (591)
T ss_dssp CCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998753 233334566788888887765 799999999999999
Q ss_pred HHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC-h
Q 007343 329 LVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-V 407 (607)
Q Consensus 329 l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~-~ 407 (607)
+++.+|+.+.+|++.|+|..+||.+||++|+++|+.++|++|++.|++||.+|+.+.|.+|+++++++||.||.+|+. .
T Consensus 309 i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~ 388 (591)
T 2vgl_B 309 IVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA 388 (591)
T ss_dssp HHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986 5
Q ss_pred HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCChHHHHH
Q 007343 408 NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILE 487 (607)
Q Consensus 408 ~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~ 487 (607)
.||+++++++++.+++++..|++.++++|++++|+.++.++..+.+.+ +++.+|+++++++|++||||+.+++++++++
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l-~~~~~~~~~~~~~wilGey~~~~~~~~~~l~ 467 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENL-DSLDEPDARAAMIWIVGEYAERIDNADELLE 467 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTT-TTCCSHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHH-HhccCHHHHHHHHHHHHcccccccCHHHHHH
Confidence 899999999999999999999999999999999999887666666654 6788999999999999999999999999999
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcC-CChhHHhHHHHHHHHccCCHHHHhhhcCCCCC
Q 007343 488 SLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLAD-FHQDVHDRALFYHRLLQYNVSVAERVVNPPKQ 566 (607)
Q Consensus 488 ~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d-~~~dvrdRA~~y~~Ll~~~~~~~~~i~~~~~p 566 (607)
.++++|..++ +.||.++|||++|++.++|++.+++++++|+.+..| .|+||||||++||+|++.+++.++++++++||
T Consensus 468 ~l~~~~~~~~-~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~~~~~v~~~~p 546 (591)
T 2vgl_B 468 SFLEGFHDES-TQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKP 546 (591)
T ss_dssp HHSTTCSSSC-HHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTHHHHHHTSCCC
T ss_pred HHHHhhccCC-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 9999999998 999999999999999999988888999999999876 79999999999999999988899999999999
Q ss_pred CcccccccCChHHHHHHHhhccchhhhhcccchhhccCCC
Q 007343 567 AVSVFADTQSSEIKDRIFDEFNSLSVVYQKVTTMSKIGFH 606 (607)
Q Consensus 567 ~~~~~~~~~~~~~~~~l~~~~~tls~iy~~~~~~~~~~~~ 606 (607)
++++..+..+++++++|+.+|||+|+||+||++.|+.+.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~~ 586 (591)
T 2vgl_B 547 LISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGSH 586 (591)
T ss_dssp CCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC----
T ss_pred CCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCcc
Confidence 9998888889999999999999999999999999998753
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=5.7e-88 Score=763.17 Aligned_cols=539 Identities=20% Similarity=0.248 Sum_probs=457.6
Q ss_pred CCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHH
Q 007343 19 KGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA 98 (607)
Q Consensus 19 ~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~ 98 (607)
++|++|||++|++. .+.+..+|+++++|+||+|++|+|++++|++|+++++|+|+++||+||+|++.|++++||++
T Consensus 34 ~~E~~~ir~~~~~~----~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~ 109 (621)
T 2vgl_A 34 NKELANIRSKFKGD----KALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI 109 (621)
T ss_dssp HHHHHHHHHHHHSS----SCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH
Confidence 47899999999951 11345789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhc--CCCChHHHHHHHHHHHHHHhhCCCCcCCCCch
Q 007343 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL--KDNNSYVRTVAVIGVLKLYHISAPTCIDADFP 176 (607)
Q Consensus 99 ~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L--~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~ 176 (607)
+|+||+|+||++|+||++||+|||+||+|+++++++.+.++|++++ .|++|||||+|++|+.|+|+.+|+.++.++|.
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~ 189 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999655899
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc--CCC-----------ChhHHHH
Q 007343 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI--KEF-----------SEWAQCL 243 (607)
Q Consensus 177 ~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l--~~~-----------~~w~qi~ 243 (607)
+.+.++| +|+|++|+.+|+.++.++++.+|+.. ..++ +.++..|.+.+ +++ +||+|++
T Consensus 190 ~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~~~~-------~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 190 SRVVHLL-NDQHLGVVTAATSLITTLAQKNPEEF-------KTSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp HHHHHHT-TCSCHHHHHHHHHHHHHHHHHCHHHH-------TTHH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred HHHHHHh-CCCCccHHHHHHHHHHHHHHhChHHH-------HHHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 9999985 99999999999999999998765311 0111 11233332222 223 7999999
Q ss_pred HHHHHhccCCC-ChhHHHHHHHHHHHHh------------ccCch--HHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHH
Q 007343 244 VLELVAKYVPL-DSNEIFDIMNLLEDRL------------QHANG--AVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLL 308 (607)
Q Consensus 244 iL~lL~~~~~~-~~~~~~~il~~l~~~L------------~~~n~--aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~ 308 (607)
+|++|+.|++. +++....+.+.+...+ +|.|+ ||++||+++++++.+. +. .+..+.+.|+
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~----~~~~~~~~L~ 335 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PN----LLVRACNQLG 335 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HH----HHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HH----HHHHHHHHHH
Confidence 99999999986 4565655666555443 44555 9999999999999753 22 3445667788
Q ss_pred HHhccCCchhHHHHHHHHHHHHhhCC--cccccccceee-ecc-CCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhc
Q 007343 309 TLVSSGSPEQSYAVLSHLHILVMRAP--FIFASDYKHFY-CQY-NEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAAN 384 (607)
Q Consensus 309 ~ll~s~~~ni~y~~L~~i~~l~~~~p--~~~~~~~~~f~-~~~-~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~ 384 (607)
+|++++++|+||+||+++..+++.+| ..++.|...|+ |.. ++|.+||++||++|+.|+|++|++.|++||.+|+.+
T Consensus 336 ~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 336 QFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLET 415 (621)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHh
Confidence 99988999999999999999999987 57888877664 555 788999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHcccCC-hHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchH
Q 007343 385 VDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPK 463 (607)
Q Consensus 385 ~d~~~~~~~i~~I~~la~k~~~-~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~ 463 (607)
.|.+|+++++++||.||++|+. ..||+++++++++.+|+++.+|+|.++++++.++|+.+++++..+.+.+ .+|+
T Consensus 416 ~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l----~~~~ 491 (621)
T 2vgl_A 416 ADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL----QAPA 491 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHH----TSSS
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHH----cCcc
Confidence 9999999999999999999976 5899999999999999999999999999999999999987654444333 3344
Q ss_pred HH----HHHHHHHhcccCCCCC-----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhc-
Q 007343 464 AK----AALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA- 533 (607)
Q Consensus 464 ~~----~~~iwilGEy~~~i~~-----~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~- 533 (607)
++ .+++|++||||+.+++ +.++++.+.++|..++ +.||+++|||++|+|.+.| +.++.++.+|+.+++
T Consensus 492 ~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~-~~v~~~~Lta~~Kl~~~~p-~~~~~i~~~l~~~~~~ 569 (621)
T 2vgl_A 492 CHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCS-VPTRALLLSTYIKFVNLFP-EVKATIQDVLRSDSQL 569 (621)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHSSHHHH
T ss_pred chHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhcC
Confidence 33 4456999999998865 3589999999999998 9999999999999999987 578899999999998
Q ss_pred -CCChhHHhHHHHHHHHccCCHHHHhhhcCCCCCCcccccccCChHHHHHHHh
Q 007343 534 -DFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFD 585 (607)
Q Consensus 534 -d~~~dvrdRA~~y~~Ll~~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~l~~ 585 (607)
|.|+||||||++||+|++.+++.++++++++||||+. .++.++++|..
T Consensus 570 ~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~~----~~~~ll~~l~~ 618 (621)
T 2vgl_A 570 KNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPE----RESSILAKLKK 618 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCCC----C----------
T ss_pred CCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCCC----cchHHHHHHHh
Confidence 9999999999999999998877889999999999863 45667777643
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=6.3e-82 Score=715.03 Aligned_cols=535 Identities=17% Similarity=0.182 Sum_probs=454.4
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChH
Q 007343 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL 97 (607)
Q Consensus 18 ~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el 97 (607)
.++|++|||++|++ ++..+|+++++|++|+|++|+|++++|++|+++++|+|+++||+||+|++.|++++||+
T Consensus 32 i~~e~~~ir~~l~~-------~~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~ 104 (618)
T 1w63_A 32 IQKECAAIRSSFRE-------EDNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDV 104 (618)
T ss_dssp HHHHHHHHHHHHTT-------TCTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHHHHhhC-------CCHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH
Confidence 35889999999997 23467999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchH
Q 007343 98 ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (607)
Q Consensus 98 ~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~ 177 (607)
++|+||+|+||++|+||++|++||++||+|+.+++++.+.+.|.+++.|++|||||+|++|+.++|+.+|+.+ ++|++
T Consensus 105 ~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--~~~~~ 182 (618)
T 1w63_A 105 HLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--EMFLP 182 (618)
T ss_dssp HHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--GGGGG
T ss_pred HHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988 48999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc------------CCCChhHHHHHH
Q 007343 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI------------KEFSEWAQCLVL 245 (607)
Q Consensus 178 ~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l------------~~~~~w~qi~iL 245 (607)
.+.++ ++|+|++|+.+|+.+|.+++..+|+. ......++ + .+.+++..+ ..++||+|+.++
T Consensus 183 ~l~~l-L~D~d~~V~~~Al~~L~~i~~~~~~~----~~~~~~~v-~-~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il 255 (618)
T 1w63_A 183 ATKNL-LNEKNHGVLHTSVVLLTEMCERSPDM----LAHFRKLV-P-QLVRILKNLIMSGYSPEHDVSGISDPFLQVRIL 255 (618)
T ss_dssp GTTTS-TTCCCHHHHHHHHHHHHHHCCSHHHH----HHHHHTTH-H-HHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHH
T ss_pred HHHHH-hCCCCHhHHHHHHHHHHHHHHhChHH----HHHHHHHH-H-HHHHHHHHHHcCCCCccccccCCCCChHHHHHH
Confidence 99998 59999999999999999998765431 00011111 1 122333321 136999999999
Q ss_pred HHHhccCCCChhHHHHHHHHHHHHh------ccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhH
Q 007343 246 ELVAKYVPLDSNEIFDIMNLLEDRL------QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS 319 (607)
Q Consensus 246 ~lL~~~~~~~~~~~~~il~~l~~~L------~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~ 319 (607)
++|+.|++.+++....+++.+..++ ++.+++|+++|+++++++... +. +...+.++|..|++++++|+|
T Consensus 256 ~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~~a~~~L~~~L~~~d~~vr 330 (618)
T 1w63_A 256 RLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRVLAINILGRFLLNNDKNIR 330 (618)
T ss_dssp HHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHHHHHHHHHHHHTCSSTTTH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHHHHHHHHHHHHhCCCCchH
Confidence 9999999998876666666665554 356789999999999998653 22 233456788899998999999
Q ss_pred HHHHHHHHHHHhhCCcccccccc-eeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007343 320 YAVLSHLHILVMRAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (607)
Q Consensus 320 y~~L~~i~~l~~~~p~~~~~~~~-~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~ 398 (607)
|+||.++..+++.+|..+.+|.. .|.|.+++|.+||++|+++|+.|+|++|++.|++||.+|+.+.|.+|+++++++||
T Consensus 331 ~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~ 410 (618)
T 1w63_A 331 YVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIF 410 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999874 67799999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCC-hHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccC-CchHHHHHHHHHHhccc
Q 007343 399 KIALQQYD-VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNV-QEPKAKAALIWMLGEYS 476 (607)
Q Consensus 399 ~la~k~~~-~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~-~~~~~~~~~iwilGEy~ 476 (607)
.||.+|++ ..||+++++++++.+++++..++|.+++++++++|+.++.++..+...+.+.+ .++.++ +++|++||||
T Consensus 411 ~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~ 489 (618)
T 1w63_A 411 LAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYG 489 (618)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHH
T ss_pred HHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHH-HHHHHHhhhH
Confidence 99999965 68999999999999999999999999999999999999877766666654333 445454 6899999999
Q ss_pred CCCCC---------------hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhHHh
Q 007343 477 QDMQD---------------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHD 541 (607)
Q Consensus 477 ~~i~~---------------~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dvrd 541 (607)
+.+.+ .+++++.+++.| .++ +.||+++|||++|++.++|+ .++.+..+|+.+..|.|+||||
T Consensus 490 ~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~~vr~~~lta~~Kl~~~~~~-~~~~l~~~L~~~~~~~d~evrd 566 (618)
T 1w63_A 490 DLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MST-SVTRGYALTAIMKLSTRFTC-TVNRIKKVVSIYGSSIDVELQQ 566 (618)
T ss_dssp HHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCC-HHHHHHHHHHHHHHHTTCSS-CHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHhcccccccccccCCCHHHHHHHHHHHHhcc-CCC-HHHHHHHHHHHHHHHHhCcc-hHHHHHHHHHHhcCCCCHHHHH
Confidence 76543 345566666666 566 99999999999999999985 4788999999999999999999
Q ss_pred HHHHHHHHccCCHHHHhhhcCCCCCCcccccccCChH
Q 007343 542 RALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSE 578 (607)
Q Consensus 542 RA~~y~~Ll~~~~~~~~~i~~~~~p~~~~~~~~~~~~ 578 (607)
||++||+|++.++ .++++++++||+++...+..+++
T Consensus 567 RA~~y~~ll~~~~-~~~~~vl~~~P~~~~~~~~~~~~ 602 (618)
T 1w63_A 567 RAVEYNALFKKYD-HMRSALLERMPVMEKVTTNGPSE 602 (618)
T ss_dssp HHHHHHHHHHTTT-THHHHHHSCCCCCCC--------
T ss_pred HHHHHHHHHcCcH-HHHHHHhhcCCCCCccccCCccc
Confidence 9999999998865 46678889999998554444333
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=2.8e-53 Score=442.27 Aligned_cols=324 Identities=15% Similarity=0.247 Sum_probs=226.8
Q ss_pred CCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCC-----cchhhhhhhhhccCCCchhHHHHHHHHHh
Q 007343 15 QPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID-----VSAVFGEMVMCSATSDIVLKKMCYLYVGN 89 (607)
Q Consensus 15 ~~~~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d-----~s~lf~~vi~l~~s~~~~~Krl~YL~l~~ 89 (607)
...+.+.++|.| .|++ .+-+..+++++++|+||+|+.|++ ++++|++|+++++|+|+++|||||+|+..
T Consensus 21 ~~~k~~v~qe~r-~fn~-----~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~ 94 (355)
T 3tjz_B 21 HLEKSAVLQEAR-VFNE-----TPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKE 94 (355)
T ss_dssp CCCHHHHHHHGG-GTTS-----SSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHH-HhcC-----CCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 355556677744 4554 223456678899999999999998 68899999999999999999999999999
Q ss_pred hccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC
Q 007343 90 YAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (607)
Q Consensus 90 ~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~ 169 (607)
|++..+| ++|+||+|+||++|+||++||+|||+||+|+.+++++++.+++++++.|++|||||+|++|++|++..+||.
T Consensus 95 ~~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~ 173 (355)
T 3tjz_B 95 MSCIAED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV 173 (355)
T ss_dssp HTTTSSC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH
T ss_pred hCCCHHH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH
Confidence 9998555 679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCC---CChhHHHHHHH
Q 007343 170 CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE---FSEWAQCLVLE 246 (607)
Q Consensus 170 ~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~---~~~w~qi~iL~ 246 (607)
+ .+|++.+.++ ++|+||+|+.+|+.+|.+|.+.++ ..+.+|+..+.+ .+||+|+.+++
T Consensus 174 v--~~~~~~l~~l-l~d~n~~V~~~Al~lL~ei~~~d~----------------~a~~kLv~~l~~~~l~~~~~q~~llr 234 (355)
T 3tjz_B 174 V--KRWVNEAQEA-ASSDNIMVQYHALGLLYHVRKNDR----------------LAVSKMISKFTRHGLKSPFAYCMMIR 234 (355)
T ss_dssp H--HTTHHHHHHH-TTCSSHHHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred H--HHHHHHHHHH-hcCCCccHHHHHHHHHHHHHhhch----------------HHHHHHHHHHhcCCCcChHHHHHHHH
Confidence 8 4799999998 599999999999999999986532 135555555433 48999999999
Q ss_pred HHhccCCCC-hhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Q 007343 247 LVAKYVPLD-SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSH 325 (607)
Q Consensus 247 lL~~~~~~~-~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~ 325 (607)
+++.+.+.+ +++...+++.+.+.|+|.|++|+|||+++|+.+..... ..+..+.++|..|++++++|+||+||+.
T Consensus 235 ~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~----~~~~~a~~~L~~fLss~d~niryvaLr~ 310 (355)
T 3tjz_B 235 VASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA----KELAPAVSVLQLFCSSPKAALRYAAVRT 310 (355)
T ss_dssp HHTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHC
T ss_pred HHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHcCCCchHHHHHHHH
Confidence 999999998 78889999999999999999999999999999865322 2334567788899999999999999999
Q ss_pred HHHHHhhCCccccccccee-eeccCCCHhHHHHHHHHHHHccCC
Q 007343 326 LHILVMRAPFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANE 368 (607)
Q Consensus 326 i~~l~~~~p~~~~~~~~~f-~~~~~d~~~Ik~~kL~iL~~l~n~ 368 (607)
+..+++++|++++.+-..+ -|..|.+.+|...++..|.+-.+|
T Consensus 311 L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 311 LNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp C-------------------------------------------
T ss_pred HHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCC
Confidence 9999999999998766543 455666688999999999887765
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.75 E-value=3.5e-16 Score=174.12 Aligned_cols=476 Identities=14% Similarity=0.059 Sum_probs=265.2
Q ss_pred cchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHH--HHHHHHHHHcCCCCHHHHHHHHHHhhcCC---hHhhHHH
Q 007343 61 VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSLR---VANLVEY 135 (607)
Q Consensus 61 ~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~--L~iNtl~kDl~~~n~~ir~lALr~l~~i~---~~e~~~~ 135 (607)
...+++.+..++.+++...|..+--.+..+....++-.+ .....+.+-..++++.+|..|...++.+. .+.+.+.
T Consensus 85 ~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~ 164 (588)
T 1b3u_A 85 VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE 164 (588)
T ss_dssp GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344555555566666777777766666666654443211 23333333344556666666655555432 2344555
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhh
Q 007343 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (607)
Q Consensus 136 l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~ 215 (607)
+.+.+.+++.|+++.||+.|+.++.++.+..+.....+.+++.+..++ +|+++.|+..|+.+|..+....+...
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~----- 238 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLLPQED----- 238 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHSCHHH-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCHHH-----
Confidence 666666666666666666666666666554443111134556666653 66666666666666666655433200
Q ss_pred hHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC--ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcc
Q 007343 216 EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL--DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT 293 (607)
Q Consensus 216 ~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~--~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~ 293 (607)
.. ..++..+.+.+.+.++..+....+.|..+... ++.....+++.+...++..++.|...|+..+-.+.....
T Consensus 239 -~~----~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 313 (588)
T 1b3u_A 239 -LE----ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS 313 (588)
T ss_dssp -HH----HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred -HH----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 00 01122222223344444555555544443221 111123455566666666666666655555444332111
Q ss_pred -hh-HHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc-ccccccc-eee-eccCCCHhHHHHHHHHHHHccCC
Q 007343 294 -DV-HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYK-HFY-CQYNEPSYVKKLKLEMLTAVANE 368 (607)
Q Consensus 294 -~~-~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~-~~~~~~~-~f~-~~~~d~~~Ik~~kL~iL~~l~n~ 368 (607)
+. ....+..+.+.+..++++.++.+|..+...+..++...+. .+.+++. .|. +..++...||...++-|..++..
T Consensus 314 ~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 10 0122334445555566666666666666666555543221 1111111 111 11222344666655555544432
Q ss_pred CC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh---HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCC
Q 007343 369 SN----TYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYP 441 (607)
Q Consensus 369 ~N----~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~---~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p 441 (607)
-. ...++..|...+.+.+..++..++..++.++..++.. ...+..++.++......|...++..+..++...+
T Consensus 394 ~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 473 (588)
T 1b3u_A 394 IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFG 473 (588)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC
Confidence 21 3457777777777888888889999999988766531 3467788888877766777778888888877654
Q ss_pred CC--chhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCC---hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcC
Q 007343 442 QW--SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR 516 (607)
Q Consensus 442 ~~--~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~---~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~ 516 (607)
.. .+.++..+..+. .-.++..|.+++|.+|+.+..... .+.++..+.+...+.. ++||...+.++.+++...
T Consensus 474 ~~~~~~~llp~l~~~~--~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~ 550 (588)
T 1b3u_A 474 KEWAHATIIPKVLAMS--GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV-ANVRFNVAKSLQKIGPIL 550 (588)
T ss_dssp HHHHHHHTHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSC-HHHHHHHHHHHHHHGGGS
T ss_pred chhHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHHHHHHHh
Confidence 31 111222222222 223567899999999998765432 2456666666666666 999999999999998665
Q ss_pred Cchh-HHHHHHHHHHhhcCCChhHHhHHHHHHHHc
Q 007343 517 PPET-QKVLGAALAAGLADFHQDVHDRALFYHRLL 550 (607)
Q Consensus 517 p~~~-~~~~~~~l~~~~~d~~~dvrdRA~~y~~Ll 550 (607)
.++. .+.+...+....+|.|++||+.|..-..-+
T Consensus 551 ~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 551 DNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred chhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 4322 234555666667899999999998765543
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.64 E-value=4.4e-13 Score=156.79 Aligned_cols=528 Identities=12% Similarity=0.047 Sum_probs=321.4
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC---CCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChH
Q 007343 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG---IDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL 97 (607)
Q Consensus 21 e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G---~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el 97 (607)
+-..+|..+-....+ .+ ..-+..+..+++.+... .....+++.+++++++++...|..+...+..+.+..++.
T Consensus 87 ~~~~ik~~ll~~l~~---~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~ 162 (852)
T 4fdd_A 87 VTDFIKSECLNNIGD---SS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162 (852)
T ss_dssp HHHHHHHHHHTTTTC---SS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHcC---CC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 345566665543322 22 23344444555555431 245557888888999999999988888777776655543
Q ss_pred ---------HHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCh------HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 007343 98 ---------ALLTINFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (607)
Q Consensus 98 ---------~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~------~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl 162 (607)
.--++..+.+-++|+++.+|..|+++++.+.. ....+.+++.+.+.+.|+++.||+.|+.|+.++
T Consensus 163 ~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l 242 (852)
T 4fdd_A 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVML 242 (852)
T ss_dssp HHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 23467788888899999999999999998742 123456778888889999999999999999999
Q ss_pred HhhCCCCcCC--CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc------cchhhhhhH-----------------
Q 007343 163 YHISAPTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS------TSEEASRER----------------- 217 (607)
Q Consensus 163 ~~~~p~~~~~--~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~------~~~~~~~~~----------------- 217 (607)
...+|+.+.. +++++.+..+ ..|.++.|+..|+..+..+++.... ......|..
T Consensus 243 ~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d 321 (852)
T 4fdd_A 243 LEVRMDRLLPHMHNIVEYMLQR-TQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD 321 (852)
T ss_dssp HHHCHHHHGGGHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-
T ss_pred HHhCHHHHHHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC
Confidence 9988876521 2345556666 4889999999999888877642100 000000000
Q ss_pred -------------------------------hhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChh----HHHHH
Q 007343 218 -------------------------------EALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN----EIFDI 262 (607)
Q Consensus 218 -------------------------------~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~----~~~~i 262 (607)
..-+-+.++..+...+.+.++..+...+..|+.+....++ ....+
T Consensus 322 ~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~ 401 (852)
T 4fdd_A 322 VEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPEL 401 (852)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHH
T ss_pred cccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 0000011222222233344444455555555555433322 12456
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhhcCCcch-hHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccccccc
Q 007343 263 MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (607)
Q Consensus 263 l~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~-~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~ 341 (607)
++.+...+++.++.|..+|+.++..+...... .....+..+.+.|...+.++++.+|..+...+..++...+..+.+++
T Consensus 402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l 481 (852)
T 4fdd_A 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL 481 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH
Confidence 77777788888888988888888766532110 00112344566677778778899999999999888866443333333
Q ss_pred ceee-----ec-----------------------------------------------cCCCHhHHHHHHHHHHHccCC-
Q 007343 342 KHFY-----CQ-----------------------------------------------YNEPSYVKKLKLEMLTAVANE- 368 (607)
Q Consensus 342 ~~f~-----~~-----------------------------------------------~~d~~~Ik~~kL~iL~~l~n~- 368 (607)
..+. +. .+++. ++ ..++.+..++..
T Consensus 482 ~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~-~~-~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 482 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD-LF-PLLECLSSVATAL 559 (852)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTT-HH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHH-HH-HHHHHHHHHHHHH
Confidence 2110 00 11111 11 223333332211
Q ss_pred -CC----HHHHHHHH----HHHh-------------hcCCHHHHHHHHHHHHHHHcccCC-hH------HHHHHHHHhhh
Q 007343 369 -SN----TYEIVTEL----CEYA-------------ANVDIPIARESIRAVGKIALQQYD-VN------AIVDRLLQFLE 419 (607)
Q Consensus 369 -~N----~~~Iv~eL----~~y~-------------~~~d~~~~~~~i~~I~~la~k~~~-~~------~~v~~ll~ll~ 419 (607)
.. +..++..+ ..++ ...|.+++..++..||.++..... .. .+++.+++++.
T Consensus 560 g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 639 (852)
T 4fdd_A 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ 639 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhC
Confidence 01 11222211 1111 122678888899999999887753 22 36788888887
Q ss_pred hcCchhhHHHHHHHHHHHHhCCCCc-hhHHHHHHhhhhc--cCCchHHHHHHHHHHhcccCCCCC-----hHHHHHHHHH
Q 007343 420 MEKDYVTAEALVLVKDLLRKYPQWS-HDCIAVVGSISSQ--NVQEPKAKAALIWMLGEYSQDMQD-----APYILESLTE 491 (607)
Q Consensus 420 ~~~~~v~~e~i~~i~~i~~~~p~~~-~~~~~~l~~l~~~--~~~~~~~~~~~iwilGEy~~~i~~-----~~~~l~~l~~ 491 (607)
.....+.+++...+.++.+..++.. .+.-.++.-+. + ...++.++..++|.+|+++..... ...++..+.+
T Consensus 640 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~-~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~ 718 (852)
T 4fdd_A 640 DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG-TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 718 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH-HTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 7667788888889999998877543 22222332222 2 234678899999999998755532 4567777777
Q ss_pred hhhcC-CcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH----HhhcCCChhHHhHHHH-HHHHccCCHHH
Q 007343 492 NWEEE-PSAEVRLHLLTAVMKCFFKRPPETQKVLGAALA----AGLADFHQDVHDRALF-YHRLLQYNVSV 556 (607)
Q Consensus 492 ~f~~e-~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~----~~~~d~~~dvrdRA~~-y~~Ll~~~~~~ 556 (607)
.+... ....++-....++.++..++|+...+.+..++. ....-.|.+.++-|+. ...++..+|+.
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGG
T ss_pred HhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHh
Confidence 66442 126788899999999999988654444444433 2223356777877776 44666667654
No 7
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.61 E-value=8.5e-14 Score=154.74 Aligned_cols=507 Identities=12% Similarity=0.079 Sum_probs=318.1
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccC-CChHHH-HHHHHHHHHcCCCCHHHHHHHHHHhhcCC----hHhhHHHHHH
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKV-NPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSLR----VANLVEYLVG 138 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~-~~el~~-L~iNtl~kDl~~~n~~ir~lALr~l~~i~----~~e~~~~l~~ 138 (607)
+...+..+.++|...|+.+-..+...+.. .++-.. -++..+ .+..|+++.+|..|.++++.+. .++..+.+.+
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L-~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~ 90 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFL-TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLP 90 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHH-HHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHH
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34456667777777777666655554331 122111 123333 3445888999999999999875 3456677888
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHh
Q 007343 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRERE 218 (607)
Q Consensus 139 ~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~ 218 (607)
.+..++.|+++.||+.|+.++.++....|.......+.+.+.++ ..++++.++..|+.++..+...-+. . .
T Consensus 91 ~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l-~~~~~~~~R~~a~~~l~~~~~~~~~---~-~---- 161 (588)
T 1b3u_A 91 PLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRL-AGGDWFTSRTSACGLFSVCYPRVSS---A-V---- 161 (588)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHH-HTCSSHHHHHHHGGGHHHHTTTSCH---H-H----
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhcCH---H-H----
Confidence 88888889999999999999999987665422123466777776 4777888888888888887654321 0 0
Q ss_pred hhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChh--HHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhH
Q 007343 219 ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN--EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVH 296 (607)
Q Consensus 219 ~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~--~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~ 296 (607)
.+.++..+...+.+.++..+...++.|..+...-+. ....+++.+...+++.++.|...|+.++..+....+.
T Consensus 162 ---~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-- 236 (588)
T 1b3u_A 162 ---KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ-- 236 (588)
T ss_dssp ---HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred ---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--
Confidence 012333344445678888888888888776432222 2345777788888888889998888887766543221
Q ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC-Ccccccccc-eee-eccCCCHhHHHHHHHHHHHccCCC----
Q 007343 297 QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASDYK-HFY-CQYNEPSYVKKLKLEMLTAVANES---- 369 (607)
Q Consensus 297 ~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~-p~~~~~~~~-~f~-~~~~d~~~Ik~~kL~iL~~l~n~~---- 369 (607)
....+.+.+.+..++++++..+|+.+.+.+..+.... ++.+.+++- .|. ...+++..+|..+..-|..++..-
T Consensus 237 ~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 1123345556667787788899999999998887643 222222221 111 123444669988888777776432
Q ss_pred ----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh---HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCC
Q 007343 370 ----NTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ 442 (607)
Q Consensus 370 ----N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~---~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~ 442 (607)
....++.-+...+.+.+...+..++.+++.++..++.. ...+..+..++....+.|...++..+..+....+.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 396 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI 396 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH
Confidence 24557777777888888999999999999988766542 23567777888766666777766666666665432
Q ss_pred C--chhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCC---hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCC
Q 007343 443 W--SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (607)
Q Consensus 443 ~--~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~---~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p 517 (607)
. ....+..+..+. ++ .++..+.++++.+|.++..... .+.++..+...+.+.. ..||...+.++.++....+
T Consensus 397 ~~~~~~~lp~l~~~~-~d-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~ 473 (588)
T 1b3u_A 397 RQLSQSLLPAIVELA-ED-AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFG 473 (588)
T ss_dssp HHHHHHHHHHHHHHH-TC-SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh-cC-CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhC
Confidence 1 122233333333 22 4567888888888887654332 3567777777666666 8999999999988876654
Q ss_pred ch--hHHHHHHHHHHhhcCCChhHHhHHHHHHHHccCC--HH-HHhhhcCCCCCCcccccccCChHHHHHHHhhccchhh
Q 007343 518 PE--TQKVLGAALAAGLADFHQDVHDRALFYHRLLQYN--VS-VAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSV 592 (607)
Q Consensus 518 ~~--~~~~~~~~l~~~~~d~~~dvrdRA~~y~~Ll~~~--~~-~~~~i~~~~~p~~~~~~~~~~~~~~~~l~~~~~tls~ 592 (607)
++ ...++..+. ....+.+..+|.-|.....-+... .+ ....+ .|.+-....+-+++++.....-+|.+..
T Consensus 474 ~~~~~~~llp~l~-~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~----~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 474 KEWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHM----LPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHHHTHHHHH-HTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred chhHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHH----HHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 32 122333333 344577888888877655444321 11 11111 1233222344556677666665555554
Q ss_pred hh
Q 007343 593 VY 594 (607)
Q Consensus 593 iy 594 (607)
.+
T Consensus 549 ~~ 550 (588)
T 1b3u_A 549 IL 550 (588)
T ss_dssp GS
T ss_pred Hh
Confidence 33
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.57 E-value=6.9e-13 Score=155.14 Aligned_cols=402 Identities=12% Similarity=0.064 Sum_probs=272.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHhhcCCh-HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC---CCC
Q 007343 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRV-ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI---DAD 174 (607)
Q Consensus 99 ~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~-~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~---~~~ 174 (607)
+--+..+.+...|+|+.+|..|-..+..+.. |+...++..-+. .+.+.++.||..|+..+-+..+.+=..+. ...
T Consensus 12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~-~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ 90 (852)
T 4fdd_A 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLT-KLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDF 90 (852)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 4445566667778999999999888888765 777666665443 34678899999999988877643211111 012
Q ss_pred chHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC
Q 007343 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL 254 (607)
Q Consensus 175 ~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~ 254 (607)
+.+.+.+. +.|+++.|+..+..++..|...++. +.| +..+..|++.+.+.++..+...+..|...+..
T Consensus 91 ik~~ll~~-l~~~~~~vr~~~a~~i~~ia~~~~~-------~~w----p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~ 158 (852)
T 4fdd_A 91 IKSECLNN-IGDSSPLIRATVGILITTIASKGEL-------QNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICED 158 (852)
T ss_dssp HHHHHHTT-TTCSSHHHHHHHHHHHHHHHHHTTT-------TTC----TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhcCc-------ccc----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33445555 4788999999999999999876532 111 22466666777777777777777666654322
Q ss_pred ChhH---------HHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Q 007343 255 DSNE---------IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSH 325 (607)
Q Consensus 255 ~~~~---------~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~ 325 (607)
.+.. ...+++.+...+++.++.|..+|++++..+....+.-....+..+.+.|..+++++++++|..+++.
T Consensus 159 ~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 159 SAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRA 238 (852)
T ss_dssp HTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred hHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1111 3456677777778889999999999987665433221111223445666777888899999999999
Q ss_pred HHHHHhhCCcccccccceee-----eccCCCHhHHHHHHHHHHHccCCC--------CHHHHHHHHHHHh----------
Q 007343 326 LHILVMRAPFIFASDYKHFY-----CQYNEPSYVKKLKLEMLTAVANES--------NTYEIVTELCEYA---------- 382 (607)
Q Consensus 326 i~~l~~~~p~~~~~~~~~f~-----~~~~d~~~Ik~~kL~iL~~l~n~~--------N~~~Iv~eL~~y~---------- 382 (607)
+..++..+|..+.+|+..++ +..+++..+|..+++.+..+|... .+..++.-|...+
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 99999999998888876332 234556779999999999999754 3446666666665
Q ss_pred -hc--CC---------HHHHHHHHHHHHHHHcccCCh--HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCC----c
Q 007343 383 -AN--VD---------IPIARESIRAVGKIALQQYDV--NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW----S 444 (607)
Q Consensus 383 -~~--~d---------~~~~~~~i~~I~~la~k~~~~--~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~----~ 444 (607)
.+ .| ...++.+..+++.++...++. ...+..+.+++......+...++..+..|....++. .
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l 398 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398 (852)
T ss_dssp HC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH
T ss_pred cCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 22 11 125778899999999887652 457777778777766677777777777776544321 1
Q ss_pred hhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCC------ChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcC
Q 007343 445 HDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ------DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR 516 (607)
Q Consensus 445 ~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~------~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~ 516 (607)
..++..+..++ .-.++.++.+++|.+|.|+.... ....++..+.+...+.. +.||.....++..+.-..
T Consensus 399 ~~~l~~l~~~l--~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~-~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 399 PELIPHLIQCL--SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN-KRVQEAACSAFATLEEEA 473 (852)
T ss_dssp HHHHHHHHHHT--TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHh
Confidence 12223333332 22367899999999999987432 24567788887776666 999999999988886443
No 9
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.55 E-value=1.2e-13 Score=154.99 Aligned_cols=417 Identities=12% Similarity=0.086 Sum_probs=231.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcC--ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHH
Q 007343 102 INFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (607)
Q Consensus 102 iNtl~kDl~~~n~~ir~lALr~l~~i--~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L 179 (607)
++.+++.+.++|+..|.-|++-+-.+ .+.++ ..+.+.+.+++.++++.+||.+.+++..+.+.+|+.. .-.++.+
T Consensus 15 ~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l~~n~l 91 (591)
T 2vgl_B 15 IFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA--IMAVNSF 91 (591)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH--HTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH--HHHHHHH
Confidence 34566666666655555444333221 01111 1233344456666666666666666666666555543 1234555
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~ 259 (607)
.+- +.|+|+.+++.|+.+|..+.. ++ .. ..++..+.+.+.+.+|..+-.....+.+....+++..
T Consensus 92 ~kd-L~~~n~~ir~~AL~~L~~i~~--~~----~~--------~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~ 156 (591)
T 2vgl_B 92 VKD-CEDPNPLIRALAVRTMGCIRV--DK----IT--------EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV 156 (591)
T ss_dssp GGG-SSSSSHHHHHHHHHHHHTCCS--GG----GH--------HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHH-cCCCCHHHHHHHHHHHHcCCh--HH----HH--------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc
Confidence 554 356666666666666655531 11 00 1123334445556666666555555554433333333
Q ss_pred H--HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchh-HHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc
Q 007343 260 F--DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDV-HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI 336 (607)
Q Consensus 260 ~--~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~-~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~ 336 (607)
. .+++.+..+|...++.|+..|+.++..+....++. ...+.......|+..+.+.++-.+-..|+.+..+....+..
T Consensus 157 ~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~ 236 (591)
T 2vgl_B 157 EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE 236 (591)
T ss_dssp HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH
T ss_pred ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH
Confidence 2 46788888888888899999998888877644321 00000111122334444566666666665543332111111
Q ss_pred ccccccee-eeccCCCHhHHHHHHHHHHHccC-----CCCHHHHHHHHHH---HhhcCCHHHHHHHHHHHHHHHcccCCh
Q 007343 337 FASDYKHF-YCQYNEPSYVKKLKLEMLTAVAN-----ESNTYEIVTELCE---YAANVDIPIARESIRAVGKIALQQYDV 407 (607)
Q Consensus 337 ~~~~~~~f-~~~~~d~~~Ik~~kL~iL~~l~n-----~~N~~~Iv~eL~~---y~~~~d~~~~~~~i~~I~~la~k~~~~ 407 (607)
...-+..+ -+..+.+..|+..+...+..+.+ ++-+..+++.+.. .+.+.|++++..++++++.++.++|+.
T Consensus 237 ~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~ 316 (591)
T 2vgl_B 237 AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEI 316 (591)
T ss_dssp HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCST
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHH
Confidence 11111111 12234445699999999999874 3445544444332 455688999999999999999888763
Q ss_pred -HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhc--cCCchHHHHHHHHHHhcccCCCC-ChH
Q 007343 408 -NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQ--NVQEPKAKAALIWMLGEYSQDMQ-DAP 483 (607)
Q Consensus 408 -~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~--~~~~~~~~~~~iwilGEy~~~i~-~~~ 483 (607)
...+..+..+. ....+|..+.+..+..+.. ++. +-.++..+. + .-.+++.+..++|-+|..+...+ ...
T Consensus 317 ~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~--~~n---v~~iv~~L~-~~l~~~d~~~r~~~v~aI~~la~~~~~~~~ 389 (591)
T 2vgl_B 317 LKQEIKVFFVKY-NDPIYVKLEKLDIMIRLAS--QAN---IAQVLAELK-EYATEVDVDFVRKAVRAIGRCAIKVEQSAE 389 (591)
T ss_dssp TTTCTTTTSCCT-TSCHHHHHHHHHHHHHTCC--SST---HHHHHHHHH-HHTTSSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhheecc-CChHHHHHHHHHHHHHHCC--hhh---HHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHhChhHHH
Confidence 22222221111 2224566666655554431 111 112333332 1 12367888889999999988764 356
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHhhcCCChhHHhHHH
Q 007343 484 YILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRAL 544 (607)
Q Consensus 484 ~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~~~~~d~~~dvrdRA~ 544 (607)
.++..+.+-+.... ..|+...+.++..+.-++|+..+..+..+.+......+++++..+.
T Consensus 390 ~~v~~Ll~ll~~~~-~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~ 449 (591)
T 2vgl_B 390 RCVSTLLDLIQTKV-NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMI 449 (591)
T ss_dssp HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHH
T ss_pred HHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 77888888777777 7888888888888887788543444555555444456788865554
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.52 E-value=4.3e-12 Score=154.11 Aligned_cols=478 Identities=13% Similarity=0.126 Sum_probs=293.6
Q ss_pred chhhhhhhhhccCCCchhHHHHHHHHHhhccCC-----ChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCC---hHhhH
Q 007343 62 SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN-----PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR---VANLV 133 (607)
Q Consensus 62 s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~-----~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~---~~e~~ 133 (607)
+..+...+.-+.++|-..|+++--.+......+ ++..--++..+.+-+.|+|+.+|..|+.+++.+. .++..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 345777777788999999998877776665432 2333356777888899999999999999988762 34567
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc--------CCCCchHHHHHhhcC-CCChhHHHHHHHHHHHHHh
Q 007343 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC--------IDADFPPTLKHLMLN-DPDPQVVANCLSALQEIWS 204 (607)
Q Consensus 134 ~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~--------~~~~~~~~L~~lLl~-D~d~~V~~~a~~~L~ei~~ 204 (607)
+.+.+.+...+.|+++.||.+|+.++..+....+..- ..+++++.|.+.+ . ++++.++..|+.+|.+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l-~~~~~~~~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI-AKQEDVSVQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHH-SCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999999987655430 0135677777775 6 4789999999999999986
Q ss_pred hccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhH-HHHHHHHHHHHhccCc-hHHHHHHH
Q 007343 205 LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE-IFDIMNLLEDRLQHAN-GAVVLSTI 282 (607)
Q Consensus 205 ~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~-~~~il~~l~~~L~~~n-~aVv~~ai 282 (607)
..+..- .+ ....++..++..+.+.+++.+...++.+..+....++. ...+++.+...|.+.+ ..+..+++
T Consensus 164 ~~~~~l---~~-----~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 164 RQGGLL---VN-----FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HTCSSC---TT-----THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HhHhHH---HH-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 544310 00 11345677777788889999999999998876543322 2234555555554332 22333333
Q ss_pred HHHHhhcCCcc-hhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccccccccee------eec--------
Q 007343 283 KVFLHLTLSMT-DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF------YCQ-------- 347 (607)
Q Consensus 283 ~~i~~l~~~~~-~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f------~~~-------- 347 (607)
.++..+....+ .+. ..+..+.+.+...+++.++++|-.++..+..++...|.-+.+++..+ ...
T Consensus 236 ~~l~~l~~~~~~~~~-~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~ 314 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIG-EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 314 (1230)
T ss_dssp HHHHHHHHHSSGGGT-TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCc
Confidence 33332221111 111 11234556677778788899999999999999887776543332210 000
Q ss_pred ---------------------------cCC-CHhHHHHHHHHHHHccCCC--CHHHH----HHHHHHHhhcCCHHHHHHH
Q 007343 348 ---------------------------YNE-PSYVKKLKLEMLTAVANES--NTYEI----VTELCEYAANVDIPIARES 393 (607)
Q Consensus 348 ---------------------------~~d-~~~Ik~~kL~iL~~l~n~~--N~~~I----v~eL~~y~~~~d~~~~~~~ 393 (607)
.+| ...+|..+.+.|..++... .+..+ +..|..++.+.+.+++..+
T Consensus 315 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a 394 (1230)
T 1u6g_C 315 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADV 394 (1230)
T ss_dssp ------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHH
T ss_pred ccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHH
Confidence 001 1247888999988887632 23333 4445556667788899999
Q ss_pred HHHHHHHHcccCC------------------------hHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCc-hhHH
Q 007343 394 IRAVGKIALQQYD------------------------VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS-HDCI 448 (607)
Q Consensus 394 i~~I~~la~k~~~------------------------~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~-~~~~ 448 (607)
+.+++.+...... ....+..+.+.+......+...++..+..++...|+.. ...-
T Consensus 395 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~ 474 (1230)
T 1u6g_C 395 FHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP 474 (1230)
T ss_dssp HHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHH
T ss_pred HHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHH
Confidence 9988877654321 01245555666776666777788888999988877532 2222
Q ss_pred HHHH---hhhhccCCchHHHHHHHHHHhcccCCCC-C-----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhc-CC-
Q 007343 449 AVVG---SISSQNVQEPKAKAALIWMLGEYSQDMQ-D-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFK-RP- 517 (607)
Q Consensus 449 ~~l~---~l~~~~~~~~~~~~~~iwilGEy~~~i~-~-----~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~-~p- 517 (607)
.++. ..+.+.-..++++..++-.++....... + .+.++..+...+.+.. ..|+...+.++..+.-. .+
T Consensus 475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~-~~v~~~al~~l~~l~~~~~~~ 553 (1230)
T 1u6g_C 475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF-YKITSEALLVTQQLVKVIRPL 553 (1230)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHhcCc
Confidence 2232 3222222123444333333333221111 1 1234555666665555 77877776666555421 11
Q ss_pred -----ch----hHHHHHHHHHHhh-cCCChhHHhHHHHHHHHc
Q 007343 518 -----PE----TQKVLGAALAAGL-ADFHQDVHDRALFYHRLL 550 (607)
Q Consensus 518 -----~~----~~~~~~~~l~~~~-~d~~~dvrdRA~~y~~Ll 550 (607)
.. ...++..+++... .|.++++|+.|..-...+
T Consensus 554 ~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 554 DQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 12 2344555555543 578999999998655433
No 11
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.47 E-value=1.5e-11 Score=135.78 Aligned_cols=345 Identities=13% Similarity=0.089 Sum_probs=243.7
Q ss_pred CCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------chhhhhhhhhccCC-CchhHHHHHHHHHh
Q 007343 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSATS-DIVLKKMCYLYVGN 89 (607)
Q Consensus 18 ~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~-------s~lf~~vi~l~~s~-~~~~Krl~YL~l~~ 89 (607)
.++.+..+-+.|++ ++.+.+..++..+-.+...+.+- +.+.+.+++++.++ +...+..+--++..
T Consensus 85 ~~~~i~~lv~~L~s-------~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~ 157 (530)
T 1wa5_B 85 LQQELPQMTQQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTN 157 (530)
T ss_dssp --CCHHHHHHHHSC-------SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 44566677666665 44567778876665555443222 23566778888886 88899999899999
Q ss_pred hccCCChHHHH-----HHHHHHHHcCCCCHHHHHHHHHHhhcCCh--HhhH-----HHHHHHHhhhcCCCChHHHHHHHH
Q 007343 90 YAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLV-----EYLVGPLGLGLKDNNSYVRTVAVI 157 (607)
Q Consensus 90 ~~~~~~el~~L-----~iNtl~kDl~~~n~~ir~lALr~l~~i~~--~e~~-----~~l~~~i~~~L~d~~~~VRK~A~l 157 (607)
++..+++..-. +++.|.+-+.++++.+|..|+.+|+++.. ++.. ..+++.+.+++.++++.||+.|+.
T Consensus 158 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 237 (530)
T 1wa5_B 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 237 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHH
Confidence 98766654322 36788888888999999999999999854 2322 235677888899999999999999
Q ss_pred HHHHHHhhC-CCC--cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC
Q 007343 158 GVLKLYHIS-APT--CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK 234 (607)
Q Consensus 158 al~kl~~~~-p~~--~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~ 234 (607)
++..+.... |.. ....+.++.|..+| .++|+.|+..|+.+|..+....+.. ...++....+..|+..+.
T Consensus 238 ~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~-------~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 238 TLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEA-------IQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHH-------HHHHHHTTCHHHHHHGGG
T ss_pred HHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHH-------HHHHHhcCcHHHHHHHHC
Confidence 999998654 321 11246788898984 8999999999999999998643321 111122235677778787
Q ss_pred CCChhHHHHHHHHHhccCCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHH-HHHHHHHH
Q 007343 235 EFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLL 308 (607)
Q Consensus 235 ~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~-~~l~~~L~ 308 (607)
+.++..+...++.|..+...++.... .+++.+..+|++.++.|..+|+.++..+....++....++ ..+.++|+
T Consensus 310 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 389 (530)
T 1wa5_B 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 88888999999999998876654333 3567788899999999999999999998764443222333 24566788
Q ss_pred HHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHH
Q 007343 309 TLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIP 388 (607)
Q Consensus 309 ~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~ 388 (607)
.++.+++++++..++..+..++..... .|.+++.. .. ..+++.|...+.+.|++
T Consensus 390 ~lL~~~~~~v~~~a~~aL~~l~~~~~~--------------~~~~~~~l--------~~----~~~l~~L~~ll~~~~~~ 443 (530)
T 1wa5_B 390 KLLEVAEYKTKKEACWAISNASSGGLQ--------------RPDIIRYL--------VS----QGCIKPLCDLLEIADNR 443 (530)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTT--------------CTHHHHHH--------HH----TTCHHHHHHHTTTCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCC--------------cHHHHHHH--------HH----CCCHHHHHHHHhCCCHH
Confidence 888888999999999999988865311 01222211 11 12555566677777888
Q ss_pred HHHHHHHHHHHHHcc
Q 007343 389 IARESIRAVGKIALQ 403 (607)
Q Consensus 389 ~~~~~i~~I~~la~k 403 (607)
++..++.+++.+...
T Consensus 444 v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 444 IIEVTLDALENILKM 458 (530)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888877654
No 12
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.46 E-value=9.2e-12 Score=140.48 Aligned_cols=444 Identities=10% Similarity=0.062 Sum_probs=309.7
Q ss_pred HHHhcCCCcchhhhhh----hhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCC
Q 007343 53 SYMTIGIDVSAVFGEM----VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR 128 (607)
Q Consensus 53 ~~~~~G~d~s~lf~~v----i~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~ 128 (607)
|++.+..+-+.+..-+ .+-++++|...+-++--+++.+. .++++--+++.+.+-+.|+||++|.-|+.+++++.
T Consensus 93 ~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~ 170 (618)
T 1w63_A 93 GAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVI 170 (618)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4444444333433333 45678999999999999999987 57887788999999999999999999999999984
Q ss_pred --hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhc--------------CCCCh
Q 007343 129 --VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLML--------------NDPDP 189 (607)
Q Consensus 129 --~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl--------------~D~d~ 189 (607)
.|+.++.+.+.+.+++.|++|.|+-.|+.++..+...+|+ .+ ..+++.+.++|. ...||
T Consensus 171 ~~~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~ 248 (618)
T 1w63_A 171 RKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDP 248 (618)
T ss_dssp HHCGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCH
T ss_pred HHChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCC
Confidence 5888888999999999999999999999999999887775 23 245555555431 14899
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc---CCCChhHHHHHHHHHhccCCCChhHHHHHHHHH
Q 007343 190 QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI---KEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLL 266 (607)
Q Consensus 190 ~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l---~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l 266 (607)
.....++.+|..+...+|....... +++..+++.. ...++.......+.+....+ ++.......+.+
T Consensus 249 ~~q~~il~~L~~l~~~~~~~~~~~~---------~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~~a~~~L 318 (618)
T 1w63_A 249 FLQVRILRLLRILGRNDDDSSEAMN---------DILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRVLAINIL 318 (618)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHTTH---------HHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCHHHHHHHH---------HHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 9999999999999887765443211 2456666543 23456777788888877654 344445677888
Q ss_pred HHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCC-cccccccceee
Q 007343 267 EDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-FIFASDYKHFY 345 (607)
Q Consensus 267 ~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p-~~~~~~~~~f~ 345 (607)
..++.+.++.|.+.|+..+..+....+. .+......+...++++++.+|-.+|+.+..++.... ..+.+++.. |
T Consensus 319 ~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~-~ 393 (618)
T 1w63_A 319 GRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLY-F 393 (618)
T ss_dssp HHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHH-H
T ss_pred HHHHhCCCCchHHHHHHHHHHHHhhCHH----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHH-H
Confidence 8889988888888888888777654333 222223345566788899999999999888875431 111122211 1
Q ss_pred eccCCCHhHHHHHHHHHHHccCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh-HHHHHHHHHhhhhc-
Q 007343 346 CQYNEPSYVKKLKLEMLTAVANE--SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEME- 421 (607)
Q Consensus 346 ~~~~d~~~Ik~~kL~iL~~l~n~--~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-~~~v~~ll~ll~~~- 421 (607)
.. +++..+|...+.-+..+|.. .+....++.|++.+.+.+..++.+++..+..+..++|+. ..++..+.+++...
T Consensus 394 l~-~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~ 472 (618)
T 1w63_A 394 LD-SCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDY 472 (618)
T ss_dssp HH-HCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCC
T ss_pred HH-hCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccc
Confidence 22 34456999999999999874 688899999999988877777888888999998899985 45888888888863
Q ss_pred -CchhhHHHHHHHHHHHHhCCC----------Cc-hhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCChHHHHHHH
Q 007343 422 -KDYVTAEALVLVKDLLRKYPQ----------WS-HDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESL 489 (607)
Q Consensus 422 -~~~v~~e~i~~i~~i~~~~p~----------~~-~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~~l 489 (607)
.+.+..-++..+-......++ .. ..+...+..++.....++.+++.++|.++.++-..++....+..+
T Consensus 473 ~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~ 552 (618)
T 1w63_A 473 SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKV 552 (618)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSCHHHHHHH
T ss_pred ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 222222232333222211110 11 123445555542224678899999999999888776656677777
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHhhcCC
Q 007343 490 TENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (607)
Q Consensus 490 ~~~f~~e~~~~vk~~iLta~~Kl~~~~p 517 (607)
++.|....+.+||--.... .+++...|
T Consensus 553 L~~~~~~~d~evrdRA~~y-~~ll~~~~ 579 (618)
T 1w63_A 553 VSIYGSSIDVELQQRAVEY-NALFKKYD 579 (618)
T ss_dssp HHHHTTCSCHHHHHHHHHH-HHHHHTTT
T ss_pred HHHhcCCCCHHHHHHHHHH-HHHHcCcH
Confidence 7777766557888777653 45554544
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.46 E-value=4e-10 Score=131.03 Aligned_cols=485 Identities=11% Similarity=0.061 Sum_probs=292.1
Q ss_pred CcchhhhhhhhhccCC-CchhHHHHHHHHHhhccCC-C------hHHHHHHHHHHHHcCCC--CHHHHHHHHHHhhcC--
Q 007343 60 DVSAVFGEMVMCSATS-DIVLKKMCYLYVGNYAKVN-P------DLALLTINFLQRDCKDE--DPMIRGLALRSLCSL-- 127 (607)
Q Consensus 60 d~s~lf~~vi~l~~s~-~~~~Krl~YL~l~~~~~~~-~------el~~L~iNtl~kDl~~~--n~~ir~lALr~l~~i-- 127 (607)
....+++.++..+.++ +...|..+...+..+.+.- + ...--++..+.+-+.|+ ++.+|..|+++++.+
T Consensus 131 ~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 131 AWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp CCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4556788888888887 8777777766665554321 1 12334566677777887 899999999999874
Q ss_pred -ChHh-----hHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCC--C-CchHHHHHhhcCCCChhHHHHHHHH
Q 007343 128 -RVAN-----LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--A-DFPPTLKHLMLNDPDPQVVANCLSA 198 (607)
Q Consensus 128 -~~~e-----~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~--~-~~~~~L~~lLl~D~d~~V~~~a~~~ 198 (607)
.... ..+.+.+.+...+.++++.||+.|+.++.++...+|+.+.. . .+++.+... +.|.++.|+..|+..
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~vr~~a~~~ 289 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIAT-MKSPNDKVASMTVEF 289 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHH-TTCSSHHHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHH
Confidence 1111 13567777888889999999999999999999888876521 1 445555555 488999999999999
Q ss_pred HHHHHhhccccchh---------hhhhHhhhcchHHHHHHHhhcCCC------ChhHH-HHHHHHHhccCCC-ChhHHHH
Q 007343 199 LQEIWSLEASTSEE---------ASREREALISKPVIYYLLNRIKEF------SEWAQ-CLVLELVAKYVPL-DSNEIFD 261 (607)
Q Consensus 199 L~ei~~~~~~~~~~---------~~~~~~~li~~~~~~~Ll~~l~~~------~~w~q-i~iL~lL~~~~~~-~~~~~~~ 261 (607)
+..+....+..... .++....-....++..++..+.+. ++|.. ....+.|..+... .......
T Consensus 290 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~ 369 (861)
T 2bpt_A 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP 369 (861)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHH
Confidence 98887642110000 000000000123455666666532 34633 3333343332211 1233456
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhhcCCcc-hhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccc--c
Q 007343 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF--A 338 (607)
Q Consensus 262 il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~-~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~--~ 338 (607)
+++.+...+++.+..+..+|+.++..+..... ......+..+.+.|...+.+.++.+|..++..+..++...+.-+ .
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 449 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ 449 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH
Confidence 77888888888888899999999888775432 22233455667777888888899999999998888876532211 1
Q ss_pred ccc----ceeeeccCCCHhHHHHHHHHHHHccCC----------CCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHc
Q 007343 339 SDY----KHFYCQYNEPSYVKKLKLEMLTAVANE----------SNTYEIVTELCEYAANVD--IPIARESIRAVGKIAL 402 (607)
Q Consensus 339 ~~~----~~f~~~~~d~~~Ik~~kL~iL~~l~n~----------~N~~~Iv~eL~~y~~~~d--~~~~~~~i~~I~~la~ 402 (607)
++. ..++-..+|+..+|..+...|..++.. .-+..|++.|...+.+.| ...+..++.+++.++.
T Consensus 450 ~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~ 529 (861)
T 2bpt_A 450 QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVE 529 (861)
T ss_dssp TTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH
Confidence 111 112111233456888777777666532 235678888888887544 6788899999999998
Q ss_pred ccCC-hHHH----HHHHHHhhhhc---------------CchhhHHHHHHHHHHHHhCCC-CchhHHHHHHhhh--hccC
Q 007343 403 QQYD-VNAI----VDRLLQFLEME---------------KDYVTAEALVLVKDLLRKYPQ-WSHDCIAVVGSIS--SQNV 459 (607)
Q Consensus 403 k~~~-~~~~----v~~ll~ll~~~---------------~~~v~~e~i~~i~~i~~~~p~-~~~~~~~~l~~l~--~~~~ 459 (607)
..+. ...+ +..+++.+... ...+...++..+..+++..+. .....-.++..+. .+..
T Consensus 530 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~ 609 (861)
T 2bpt_A 530 YATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK 609 (861)
T ss_dssp HCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHST
T ss_pred HcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccC
Confidence 7664 2223 33344444321 112334555667777776654 2222222232222 0111
Q ss_pred Cch-HHHHHHHHHHhccc----CCC-CChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHHH----HH
Q 007343 460 QEP-KAKAALIWMLGEYS----QDM-QDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAA----LA 529 (607)
Q Consensus 460 ~~~-~~~~~~iwilGEy~----~~i-~~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~----l~ 529 (607)
++ .++..+++.+|... ... +-.+.++..+.+.+.... +.+|...+.++..+.-..++...+.+..+ ++
T Consensus 610 -~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~ 687 (861)
T 2bpt_A 610 -DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVD-SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ 687 (861)
T ss_dssp -TGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHH
Confidence 12 44554555444432 222 123556677777765555 77898888887777655544444444333 34
Q ss_pred HhhcC-CChhHHhHHHHHH
Q 007343 530 AGLAD-FHQDVHDRALFYH 547 (607)
Q Consensus 530 ~~~~d-~~~dvrdRA~~y~ 547 (607)
....+ .++++|..|...+
T Consensus 688 ~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 688 MISNPNARRELKPAVLSVF 706 (861)
T ss_dssp HHHCTTCCTTHHHHHHHHH
T ss_pred HhCCccccHhhhHHHHHHH
Confidence 33333 4589999887654
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.45 E-value=3.1e-11 Score=133.21 Aligned_cols=340 Identities=13% Similarity=0.066 Sum_probs=244.3
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccCCC--hHHH----HHHHHHHHHcCCCC-HHHHHHHHHHhhcCCh--HhhHH-
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNP--DLAL----LTINFLQRDCKDED-PMIRGLALRSLCSLRV--ANLVE- 134 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~--el~~----L~iNtl~kDl~~~n-~~ir~lALr~l~~i~~--~e~~~- 134 (607)
.+.+++.+.++|...+.-+--++..++...+ .... =++..|.+-+.+++ +.+|..|+.+|+++.. ++...
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6778888899999888888888877754332 2211 24778888888887 9999999999998854 44333
Q ss_pred ----HHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 135 ----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 135 ----~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
..++.+.+++.++++.||..|+.++..+....|+ .+...+.++.|..+|..+.++.|+.+|+.+|..++...|
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3677888999999999999999999999865443 222356788888875467899999999999999987654
Q ss_pred ccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHH-----HHHHHHHHhccCchHHHHHHH
Q 007343 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTI 282 (607)
Q Consensus 208 ~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~-----il~~l~~~L~~~n~aVv~~ai 282 (607)
..... .....+..|+..+...++..+...+..|..+...+++.... +++.+..+|++.++.|...|+
T Consensus 236 ~~~~~--------~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 236 QPSFE--------QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp CCCHH--------HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred CCcHH--------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 32111 11235777777788889999999999999887665543332 466888899999999999999
Q ss_pred HHHHhhcCCcchhHHHHH-HHHHHHHHHHhccC-CchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHH
Q 007343 283 KVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLE 360 (607)
Q Consensus 283 ~~i~~l~~~~~~~~~~~~-~~l~~~L~~ll~s~-~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~ 360 (607)
+++..+....+.....++ ..+.+.|..++.++ ++.++..+...+..++...+. .++.
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~-----------------~~~~---- 366 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD-----------------QIQA---- 366 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH-----------------HHHH----
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH-----------------HHHH----
Confidence 999988765443333333 13456677788777 788888888887777643211 0110
Q ss_pred HHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHccc-CCh------HHHHHHHHHhhhhcCchhhHHHHHHH
Q 007343 361 MLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQ-YDV------NAIVDRLLQFLEMEKDYVTAEALVLV 433 (607)
Q Consensus 361 iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~-~~~------~~~v~~ll~ll~~~~~~v~~e~i~~i 433 (607)
+.+. .++..|...+.+.|.+++..++.+|+.++... +.. ..++..+++++......+...++..+
T Consensus 367 ----~~~~----~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 438 (528)
T 4b8j_A 367 ----VINA----GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438 (528)
T ss_dssp ----HHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ----HHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0011 34555666777789999999999999998763 221 13678889999887777777777888
Q ss_pred HHHHHhCC
Q 007343 434 KDLLRKYP 441 (607)
Q Consensus 434 ~~i~~~~p 441 (607)
.++++..+
T Consensus 439 ~~l~~~~~ 446 (528)
T 4b8j_A 439 ENILKVGE 446 (528)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.45 E-value=1.6e-10 Score=123.99 Aligned_cols=339 Identities=14% Similarity=0.080 Sum_probs=239.7
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------c-hhhhhhhhhccCC-CchhHHHHHHHHHhhcc
Q 007343 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------S-AVFGEMVMCSATS-DIVLKKMCYLYVGNYAK 92 (607)
Q Consensus 22 ~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~-------s-~lf~~vi~l~~s~-~~~~Krl~YL~l~~~~~ 92 (607)
+..+-+.|++ ++...|..++..+-.+...+.+. . .+.+.+++++.++ +...+.-+--++..++.
T Consensus 22 l~~l~~~l~s-------~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 22 TSDMIEMIFS-------KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp CHHHHHHHHS-------SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 6667777765 44566777776665555433221 1 4566667888887 88889888888888887
Q ss_pred CCChHHH-----HHHHHHHHHcCCCCHHHHHHHHHHhhcCCh--HhhHH-----HHHHHHhhhcCC-CChHHHHHHHHHH
Q 007343 93 VNPDLAL-----LTINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE-----YLVGPLGLGLKD-NNSYVRTVAVIGV 159 (607)
Q Consensus 93 ~~~el~~-----L~iNtl~kDl~~~n~~ir~lALr~l~~i~~--~e~~~-----~l~~~i~~~L~d-~~~~VRK~A~lal 159 (607)
.+++..- -++..|.+-+.++++.+|..|+.+++++.. ++..+ .+++.+.+++.+ +++.||+.|+.++
T Consensus 95 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 95 GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 6554321 267888899999999999999999999854 22222 346777788885 7999999999999
Q ss_pred HHHHhhC-CCC--cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCC
Q 007343 160 LKLYHIS-APT--CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF 236 (607)
Q Consensus 160 ~kl~~~~-p~~--~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~ 236 (607)
..+.... |.. ....+.++.|.+++ .++|+.|+..|+.+|..+....++. ...+.....+..|++.+.+.
T Consensus 175 ~~l~~~~~~~~~~~~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~ll~~~ 246 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKVSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDK-------IQAVIDAGVCRRLVELLMHN 246 (450)
T ss_dssp HHHHCCSSSCCCGGGTGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHHH-------HHHHHHTTTHHHHHHHTTCS
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcHH-------HHHHHHcCcHHHHHHHHCCC
Confidence 9998654 432 11256888999984 8999999999999999997643211 11111223567777777777
Q ss_pred ChhHHHHHHHHHhccCCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHH
Q 007343 237 SEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTL 310 (607)
Q Consensus 237 ~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~l 310 (607)
++-.+...++.|..+...+++... .+++.+..++++.++.|..+|+.++..+....+.....+++ .+.+.|+.+
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISI 326 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 888889999999988766554332 36778888999999999999999999987644433333332 456677888
Q ss_pred hccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHH
Q 007343 311 VSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIA 390 (607)
Q Consensus 311 l~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~ 390 (607)
+.++++++|..+...+..++... ++..++. +.+ ..+++.|.+.+.+.|.+++
T Consensus 327 l~~~~~~v~~~a~~~L~~l~~~~----------------~~~~~~~--------l~~----~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 327 LQTAEFRTRKEAAWAITNATSGG----------------SAEQIKY--------LVE----LGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHC----------------CHHHHHH--------HHH----HTCHHHHHHGGGSSCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCC----------------CHHHHHH--------HHH----CCCHHHHHHHhcCCCHHHH
Confidence 88888999999999888887652 1111211 000 2355666777777888899
Q ss_pred HHHHHHHHHHHcc
Q 007343 391 RESIRAVGKIALQ 403 (607)
Q Consensus 391 ~~~i~~I~~la~k 403 (607)
..++.+++.++..
T Consensus 379 ~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 379 QVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888764
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.44 E-value=1.7e-11 Score=135.54 Aligned_cols=341 Identities=12% Similarity=0.082 Sum_probs=241.9
Q ss_pred hhhhhhhhhccCCCchhHHHHHHHHHhhccC--CChHHH----HHHHHHHHHcCCC-CHHHHHHHHHHhhcCCh--HhhH
Q 007343 63 AVFGEMVMCSATSDIVLKKMCYLYVGNYAKV--NPDLAL----LTINFLQRDCKDE-DPMIRGLALRSLCSLRV--ANLV 133 (607)
Q Consensus 63 ~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~--~~el~~----L~iNtl~kDl~~~-n~~ir~lALr~l~~i~~--~e~~ 133 (607)
...+.++..+.+++...+..+-.++..++.. ++.... -++..|.+-+.++ |+.+|..|+.+++++.. ++..
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3467778888999999998888888877643 332211 2578888889987 99999999999999865 4433
Q ss_pred HH-----HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 134 EY-----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 134 ~~-----l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
.. .++.+.+++.++++.||..|+.++..+....|+ .+...+.++.|..++ .+.++.|+.+|+.+|..++..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCC
Confidence 33 367788888899999999999999999865432 222357889999985 889999999999999999865
Q ss_pred c-cccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHH-----HHHHHHHHHhccCchHHHH
Q 007343 206 E-ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVL 279 (607)
Q Consensus 206 ~-~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~L~~~n~aVv~ 279 (607)
. +.... ......+..|++.+...++..+...+..|..+...+++... .+++.+..++++.++.|..
T Consensus 246 ~~~~~~~--------~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~ 317 (530)
T 1wa5_B 246 KKPQPDW--------SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 317 (530)
T ss_dssp SSSCCCH--------HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred CCCCCcH--------HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHH
Confidence 4 32111 01123566777777788899999999999887765544332 3567788888999999999
Q ss_pred HHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHH
Q 007343 280 STIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLK 358 (607)
Q Consensus 280 ~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~k 358 (607)
.|+.++..+....+.....+++ .+.+.|..++.++++.++..++..+..++...+ ..++.
T Consensus 318 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~-----------------~~~~~-- 378 (530)
T 1wa5_B 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT-----------------EQIQA-- 378 (530)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-----------------HHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-----------------HHHHH--
Confidence 9999999887654433333332 355667778877778888888888777664321 11110
Q ss_pred HHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccC---Ch------HHHHHHHHHhhhhcCchhhHHH
Q 007343 359 LEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQY---DV------NAIVDRLLQFLEMEKDYVTAEA 429 (607)
Q Consensus 359 L~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~---~~------~~~v~~ll~ll~~~~~~v~~e~ 429 (607)
+.+ ..++..|...+.+.+.+++..++.+|+.++.... .. ..++..+++++......+...+
T Consensus 379 ------~~~----~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a 448 (530)
T 1wa5_B 379 ------VID----ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448 (530)
T ss_dssp ------HHH----TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHH
T ss_pred ------HHH----CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHH
Confidence 000 1345556667777899999999999999987542 21 1257788888887766677777
Q ss_pred HHHHHHHHHhCC
Q 007343 430 LVLVKDLLRKYP 441 (607)
Q Consensus 430 i~~i~~i~~~~p 441 (607)
...+.+++...+
T Consensus 449 l~aL~~l~~~~~ 460 (530)
T 1wa5_B 449 LDALENILKMGE 460 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 777777766433
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.44 E-value=3.6e-12 Score=136.91 Aligned_cols=331 Identities=13% Similarity=0.069 Sum_probs=209.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcC----ChH---hhHH--HHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhhCCCC
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSL----RVA---NLVE--YLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPT 169 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i----~~~---e~~~--~l~~~i~~~L~d~-~~~VRK~A~lal~kl~~~~p~~ 169 (607)
+++..+.+.++++++.+|..|++++.++ ..+ ++++ .+++.+.+.+.++ ++.||..|+.++..+...+++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4567777888889999999998888775 222 2332 4778888888888 8999999999999998654432
Q ss_pred ---cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCC-CChhHHHHHH
Q 007343 170 ---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE-FSEWAQCLVL 245 (607)
Q Consensus 170 ---~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~-~~~w~qi~iL 245 (607)
+.+.+.++.|.++| .++|+.|+..|+.+|..+....+.. +..++....+..|++.+.+ .++-.+...+
T Consensus 100 ~~~~~~~~~i~~L~~lL-~~~~~~vr~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELL-SSEFEDVQEQAVWALGNIAGDSTMC-------RDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHccCCHHH-------HHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 11357889999984 8899999999999999998754321 1111112245667777764 6777888888
Q ss_pred HHHhccCCCC-h----hHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHH-HHHHHHHHHHhccCCchhH
Q 007343 246 ELVAKYVPLD-S----NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQS 319 (607)
Q Consensus 246 ~lL~~~~~~~-~----~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~-~~l~~~L~~ll~s~~~ni~ 319 (607)
..|..++... + .....+++.+...+++.++.|...|+.++..+....++....+. ..+.+.|+.++.+++++++
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 8887765322 1 12345788888899999999999999999888765433222222 2356678888888899999
Q ss_pred HHHHHHHHHHHhhCCccc----cccc-ceee-eccCCCHhHHHHHHHHHHHccC--CCCHH-----HHHHHHHHHhhcCC
Q 007343 320 YAVLSHLHILVMRAPFIF----ASDY-KHFY-CQYNEPSYVKKLKLEMLTAVAN--ESNTY-----EIVTELCEYAANVD 386 (607)
Q Consensus 320 y~~L~~i~~l~~~~p~~~----~~~~-~~f~-~~~~d~~~Ik~~kL~iL~~l~n--~~N~~-----~Iv~eL~~y~~~~d 386 (607)
..++..+..++...+... .... ..+. +..+.+..+|..++..|..++. +.+.. .+++.|...+.+.+
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 999999988876543211 1000 1110 1122234566666666666653 12222 23445555555666
Q ss_pred HHHHHHHHHHHHHHHccc-CC-h-----HHHHHHHHHhhhhcCchhhHHHHHHHHHHHH
Q 007343 387 IPIARESIRAVGKIALQQ-YD-V-----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLR 438 (607)
Q Consensus 387 ~~~~~~~i~~I~~la~k~-~~-~-----~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~ 438 (607)
+++++.++.+++.++... +. . ...+..|++++......+...++..+.+++.
T Consensus 332 ~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 666666666666666542 11 1 1144555555555444444444444444443
No 18
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.42 E-value=1.2e-09 Score=127.21 Aligned_cols=495 Identities=12% Similarity=0.092 Sum_probs=287.7
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCcchhhhhhhhhccCC--CchhHHHHHHHHHhhccCC-Ch-
Q 007343 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATS--DIVLKKMCYLYVGNYAKVN-PD- 96 (607)
Q Consensus 21 e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~--~~~~Krl~YL~l~~~~~~~-~e- 96 (607)
+...+|..|-+...+.++.. ..-..++..+............+++.++.++.++ +...|+.+...+..+...- ++
T Consensus 87 ~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (876)
T 1qgr_A 87 ARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (876)
T ss_dssp HHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh
Confidence 34455555554433333322 2333344443333222244666788888888888 8888887777776665432 22
Q ss_pred ---HHHHHHHHHHHHcCCC--CHHHHHHHHHHhhcCCh---Hhh-----HHHHHHHHhhhcCCCChHHHHHHHHHHHHHH
Q 007343 97 ---LALLTINFLQRDCKDE--DPMIRGLALRSLCSLRV---ANL-----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (607)
Q Consensus 97 ---l~~L~iNtl~kDl~~~--n~~ir~lALr~l~~i~~---~e~-----~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~ 163 (607)
..-.+++.+.+-+.++ ++.+|..|+++++.+.. +.+ .+.+.+.+...+.|.++.||+.|+.++..+.
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 2234556677777776 79999999999987531 111 1346777778889999999999999999999
Q ss_pred hhCCCCcCC--C-CchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchh-------------hhhhHhhhcchHHHH
Q 007343 164 HISAPTCID--A-DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE-------------ASREREALISKPVIY 227 (607)
Q Consensus 164 ~~~p~~~~~--~-~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~-------------~~~~~~~li~~~~~~ 227 (607)
..+|+.+.. . .+++.+...+ .|.++.|+..|+..+..+.+..+....+ .+.........+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence 888876521 2 5666666664 7889999999998888887542100000 000000000022344
Q ss_pred HHHhhcCC------CChhHH----HHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcc-hhH
Q 007343 228 YLLNRIKE------FSEWAQ----CLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVH 296 (607)
Q Consensus 228 ~Ll~~l~~------~~~w~q----i~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~-~~~ 296 (607)
.+++.+.. -++|.. ...|..+....+ ......+++.+...+++.+..+..+|+.++..+..... +..
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~ 402 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHH
Confidence 45555432 245732 334444444333 23345677788888888899999999999988875433 222
Q ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCccc--ccccc----eeeeccCCCHhHHHHHHHHHHHccCC--
Q 007343 297 QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF--ASDYK----HFYCQYNEPSYVKKLKLEMLTAVANE-- 368 (607)
Q Consensus 297 ~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~--~~~~~----~f~~~~~d~~~Ik~~kL~iL~~l~n~-- 368 (607)
...+..+.+.|...++++++.+|..++..+..++...+..+ .+++. .++-..+|+..+|..+...|..++..
T Consensus 403 ~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 403 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 23455677778888888889999999999999988755421 22222 11112233455777777666665521
Q ss_pred ------------------CCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHH----------------------------
Q 007343 369 ------------------SNTYEIVTELCEYAANVD---IPIARESIRAVGK---------------------------- 399 (607)
Q Consensus 369 ------------------~N~~~Iv~eL~~y~~~~d---~~~~~~~i~~I~~---------------------------- 399 (607)
.-+..|+..|...+.+.+ ..++..++.+++.
T Consensus 483 ~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~ 562 (876)
T 1qgr_A 483 EAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVL 562 (876)
T ss_dssp HTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHH
Confidence 234566666666655431 2343344444444
Q ss_pred ----------------------------HHcccC-C-----hHHHHHHHHHhhhhcC--chhhHHHHHHHHHHHHhCCC-
Q 007343 400 ----------------------------IALQQY-D-----VNAIVDRLLQFLEMEK--DYVTAEALVLVKDLLRKYPQ- 442 (607)
Q Consensus 400 ----------------------------la~k~~-~-----~~~~v~~ll~ll~~~~--~~v~~e~i~~i~~i~~~~p~- 442 (607)
++...+ . ....+..+++++.... ..+..+++..+..++...+.
T Consensus 563 ~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~ 642 (876)
T 1qgr_A 563 QMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE 642 (876)
T ss_dssp TTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh
Confidence 433333 1 0123444444444432 24555555666666554322
Q ss_pred Cchh---HHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCC-----hHHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHh
Q 007343 443 WSHD---CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-----APYILESLTENWEEE-PSAEVRLHLLTAVMKCF 513 (607)
Q Consensus 443 ~~~~---~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~-----~~~~l~~l~~~f~~e-~~~~vk~~iLta~~Kl~ 513 (607)
...+ ++..+...+ ..-.++.++.+++|.+|+.+..... .+.++..+.+.+... .+..+|...+.++..+.
T Consensus 643 ~~~~~~~~~~~l~~~l-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~ 721 (876)
T 1qgr_A 643 FLKYMEAFKPFLGIGL-KNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIA 721 (876)
T ss_dssp GGGGHHHHHHHHHHHH-HHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHH
Confidence 1121 222222222 2224677888889998887643321 467777888777652 22679999998888887
Q ss_pred hcCCchh
Q 007343 514 FKRPPET 520 (607)
Q Consensus 514 ~~~p~~~ 520 (607)
...+++.
T Consensus 722 ~~~g~~~ 728 (876)
T 1qgr_A 722 LAIGGEF 728 (876)
T ss_dssp HHHGGGG
T ss_pred HHhchhH
Confidence 6555443
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.40 E-value=1.1e-10 Score=135.29 Aligned_cols=443 Identities=11% Similarity=0.057 Sum_probs=274.2
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC--Cc-CCCCchH
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP--TC-IDADFPP 177 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~--~~-~~~~~~~ 177 (607)
.+.++.++|.++++.+|..|++.++.+...++....++.+.++|.++++.||..|+.++..+....+. .+ ..++.++
T Consensus 116 ~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~ 195 (780)
T 2z6g_A 116 AHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 195 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHH
Confidence 36789999999999999999999988777778888899999999999999999999999999764321 11 1235778
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChh
Q 007343 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN 257 (607)
Q Consensus 178 ~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~ 257 (607)
.|.++|.++.|+.++.+|+.+|..+...... ...+.....+..|++.+...++-.|...+..|...+..+++
T Consensus 196 ~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--------~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 196 AIVRTMQNTNDVETARCTSGTLHNLSHHREG--------LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 8888764456999999999999998654210 11111123577788888888888998888888877543222
Q ss_pred HH-----HHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCch-hHHHHHHHHHHHH
Q 007343 258 EI-----FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPE-QSYAVLSHLHILV 330 (607)
Q Consensus 258 ~~-----~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~n-i~y~~L~~i~~l~ 330 (607)
.. ...++.+..++++.+..|...|+.++-.+....++.+..+.+ ...+.|+.++.+++++ .+..+...+..+.
T Consensus 268 ~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls 347 (780)
T 2z6g_A 268 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 347 (780)
T ss_dssp HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 21 235677888888888777766666665555433333322221 2345677788765554 4555666665555
Q ss_pred hhCCcc----cccc-cceee-eccCCCHhHHHHHHHHHHHccCCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 007343 331 MRAPFI----FASD-YKHFY-CQYNEPSYVKKLKLEMLTAVANES----NTYEIVTELCEYAANVDIPIARESIRAVGKI 400 (607)
Q Consensus 331 ~~~p~~----~~~~-~~~f~-~~~~d~~~Ik~~kL~iL~~l~n~~----N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~l 400 (607)
. .+.. +... +..+. ...+.+..++..++..|..++... ....++..|...+.+.|.+.++.++.+++.+
T Consensus 348 ~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L 426 (780)
T 2z6g_A 348 V-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL 426 (780)
T ss_dssp T-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred c-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3 3221 1111 11111 122334568889999999987543 4678899999999999999999999999999
Q ss_pred HcccCCh------HHHHHHHHHhhhhcCc--hhhHHHHHHHHHHHHhCCCCc---h-----hHHHHHHhhhhccCCchHH
Q 007343 401 ALQQYDV------NAIVDRLLQFLEMEKD--YVTAEALVLVKDLLRKYPQWS---H-----DCIAVVGSISSQNVQEPKA 464 (607)
Q Consensus 401 a~k~~~~------~~~v~~ll~ll~~~~~--~v~~e~i~~i~~i~~~~p~~~---~-----~~~~~l~~l~~~~~~~~~~ 464 (607)
+...+.. ...+..|++++...++ .+...++..+.+|....++.. . ..+..+.+++ ..-..+..
T Consensus 427 ~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL-~~~~~~~v 505 (780)
T 2z6g_A 427 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL-HPPSHWPL 505 (780)
T ss_dssp TSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTT-STTCCHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHh-cCCChHHH
Confidence 8754321 2368889999886433 677777778888865555421 1 1123344443 22234578
Q ss_pred HHHHHHHHhcccCCCCC---------hHHHHHHHHHh----------------hhcC-CcHHHHHHHHHHHHHHhhcCCc
Q 007343 465 KAALIWMLGEYSQDMQD---------APYILESLTEN----------------WEEE-PSAEVRLHLLTAVMKCFFKRPP 518 (607)
Q Consensus 465 ~~~~iwilGEy~~~i~~---------~~~~l~~l~~~----------------f~~e-~~~~vk~~iLta~~Kl~~~~p~ 518 (607)
+..++|.+|..+..-.+ .+.+++.+... +... .+.+++...+.++..+. ..+
T Consensus 506 ~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La-~~~- 583 (780)
T 2z6g_A 506 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA-RDI- 583 (780)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHT-TSH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHh-cCh-
Confidence 88999999988743211 12222222221 1111 12557777777777774 332
Q ss_pred hhHHHHH-----HHHHHhhcCCChhHHhHHHHHHHHccCCHH
Q 007343 519 ETQKVLG-----AALAAGLADFHQDVHDRALFYHRLLQYNVS 555 (607)
Q Consensus 519 ~~~~~~~-----~~l~~~~~d~~~dvrdRA~~y~~Ll~~~~~ 555 (607)
+.+..+. ..|-....+.+++||..|..-..-+..+++
T Consensus 584 ~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 625 (780)
T 2z6g_A 584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 625 (780)
T ss_dssp HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHH
T ss_pred hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH
Confidence 2222221 123334457889999998764433334433
No 20
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.38 E-value=9.5e-12 Score=125.63 Aligned_cols=196 Identities=14% Similarity=0.015 Sum_probs=133.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHH
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L 179 (607)
.+++.+.+.|.|+|+.+|..|+++++.++.++.+ +.+.+++.|+++.||..|+.++.++... ++.+ +..++.|
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~----~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~--~~l~~~L 95 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGGQDAV----RLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCE--DNVFNIL 95 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHH----HHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTH--HHHHHHH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCCchHH----HHHHHHHcCCCHHHHHHHHHHHHHhccc-cccc--hHHHHHH
Confidence 3578899999999999999999999999977654 4566788999999999999999887531 2222 2244455
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~ 259 (607)
.+.+++|+|+.|+.+|+.+|..+....+.. .+..+..|...+.+.+++.+...+..|..+...
T Consensus 96 ~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~------------~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~----- 158 (280)
T 1oyz_A 96 NNMALNDKSACVRATAIESTAQRCKKNPIY------------SPKIVEQSQITAFDKSTNVRRATAFAISVINDK----- 158 (280)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHCGGG------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhccCCcc------------cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH-----
Confidence 543358999999999999999987543210 122455566667778888888888888776432
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHH
Q 007343 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (607)
Q Consensus 260 ~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~ 328 (607)
..++.+...+++.++.|...|+..+..+....+ .+.+.|..++.++++++|..++..+..
T Consensus 159 -~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 159 -ATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 145666667777777777777777766643221 123344555555555666555555443
No 21
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.38 E-value=8.3e-10 Score=128.34 Aligned_cols=438 Identities=11% Similarity=0.030 Sum_probs=265.0
Q ss_pred cCCCchhHHHHHHHHHhhccCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCC-------------------hHhh
Q 007343 73 ATSDIVLKKMCYLYVGNYAKVN-PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------------------VANL 132 (607)
Q Consensus 73 ~s~~~~~Krl~YL~l~~~~~~~-~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~-------------------~~e~ 132 (607)
.++|-..|+-+--++..+...+ |+........+.. .+.++.+|..|...+.+.- .++.
T Consensus 15 ~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~--~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~ 92 (861)
T 2bpt_A 15 LSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLID--ENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEA 92 (861)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHH
T ss_pred cCcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhC--CCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHH
Confidence 4555556666665555544322 3332222222221 1235566666666555541 2344
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC-CC-CcCCCCchHHHHHhhcCCC-ChhHHHHHHHHHHHHHhhcccc
Q 007343 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-AP-TCIDADFPPTLKHLMLNDP-DPQVVANCLSALQEIWSLEAST 209 (607)
Q Consensus 133 ~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~-p~-~~~~~~~~~~L~~lLl~D~-d~~V~~~a~~~L~ei~~~~~~~ 209 (607)
.+.+...+...+.++++.||++++.++..+.+.+ |. .. +++++.|.+.+ .++ |+.++..|+.++..+.+.-+..
T Consensus 93 ~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w--~~ll~~L~~~l-~~~~~~~~r~~al~~l~~l~~~~~~~ 169 (861)
T 2bpt_A 93 KNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW--PELMKIMVDNT-GAEQPENVKRASLLALGYMCESADPQ 169 (861)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC--HHHHHHHHHHT-STTSCHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCccccc--HHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHcCChh
Confidence 5566667777889999999999999999998764 53 22 45667777774 677 9999999999999998753210
Q ss_pred chhhhhhHhhhcchHHHHHHHhhcCCC--ChhHHHHHHHHHhccC---CC---ChhHHHHHHHHHHHHhccCchHHHHHH
Q 007343 210 SEEASREREALISKPVIYYLLNRIKEF--SEWAQCLVLELVAKYV---PL---DSNEIFDIMNLLEDRLQHANGAVVLST 281 (607)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~--~~w~qi~iL~lL~~~~---~~---~~~~~~~il~~l~~~L~~~n~aVv~~a 281 (607)
.....+ ....++..+...+.+. ++-.+...++.+..+. .. .......+++.+...+++.+..+...+
T Consensus 170 ~~~~~~-----~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a 244 (861)
T 2bpt_A 170 SQALVS-----SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAA 244 (861)
T ss_dssp SSTTGG-----GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHH
T ss_pred hhHHHH-----HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 000000 1123455555556655 6667778888877642 11 111223477777778888888888888
Q ss_pred HHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHhhC-----------------Ccccccccc-
Q 007343 282 IKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-----------------PFIFASDYK- 342 (607)
Q Consensus 282 i~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~-----------------p~~~~~~~~- 342 (607)
++++..+....++.-...+. .+.+.+...+.+.+++++..+++.+..++... |..+.+.+.
T Consensus 245 ~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (861)
T 2bpt_A 245 FGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKD 324 (861)
T ss_dssp HHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHH
Confidence 88877665332221112233 45555566677788999999999988887652 112211111
Q ss_pred ---eee--ecc------CCCHhHHHHHHHHHHHccC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccC-C-
Q 007343 343 ---HFY--CQY------NEPSYVKKLKLEMLTAVAN---ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQY-D- 406 (607)
Q Consensus 343 ---~f~--~~~------~d~~~Ik~~kL~iL~~l~n---~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~-~- 406 (607)
.++ ... +|...+|..+.+.|..++. +.-+..+++-+.+.+.+.+...+..++.++|.++.... +
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 404 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQ 404 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHH
Confidence 111 111 1224688888888877764 34456677777777778888899999999999996643 2
Q ss_pred hH----HHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCC------CCchhHHHHHHhhhhccCCchHHHHHHHHHHhccc
Q 007343 407 VN----AIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYP------QWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYS 476 (607)
Q Consensus 407 ~~----~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p------~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~ 476 (607)
.. ..+..++..+......+...+...+..+....+ .....++..+.+.+.+ +++++.+++|.++.++
T Consensus 405 ~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~---~~~v~~~a~~al~~l~ 481 (861)
T 2bpt_A 405 RTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD---HPKVATNCSWTIINLV 481 (861)
T ss_dssp HHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHH
Confidence 22 345556666665555666666556665554321 2222333333333222 2788888999988766
Q ss_pred CCCC---------ChHHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHhhcCCchhHHH
Q 007343 477 QDMQ---------DAPYILESLTENWEEEP-SAEVRLHLLTAVMKCFFKRPPETQKV 523 (607)
Q Consensus 477 ~~i~---------~~~~~l~~l~~~f~~e~-~~~vk~~iLta~~Kl~~~~p~~~~~~ 523 (607)
+... ..+.++..+.+.+...+ .+.||...+.++..+....+.+..+.
T Consensus 482 ~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~ 538 (861)
T 2bpt_A 482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAET 538 (861)
T ss_dssp HHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHH
Confidence 5332 24566777777665322 26799999999988887777554433
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.37 E-value=2.9e-10 Score=125.30 Aligned_cols=371 Identities=14% Similarity=0.101 Sum_probs=250.0
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCC-Cc------chhhhhhhhhccCCC-chhHHHHHHHHHhhccC
Q 007343 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGI-DV------SAVFGEMVMCSATSD-IVLKKMCYLYVGNYAKV 93 (607)
Q Consensus 22 ~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~-d~------s~lf~~vi~l~~s~~-~~~Krl~YL~l~~~~~~ 93 (607)
+.+|-..|.+ ++.+.+..+++.+-.+...+. +. ..+.+.+++++.+++ ...+..+--++.+++..
T Consensus 76 l~~lv~~L~s-------~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~ 148 (528)
T 4b8j_A 76 LPAMIGGVYS-------DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASG 148 (528)
T ss_dssp HHHHHHHHTS-------SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcC-------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC
Confidence 5555555554 345677777765555444332 11 124566678888876 88898888899999887
Q ss_pred CChHHHH-----HHHHHHHHcCCCCHHHHHHHHHHhhcCCh--HhhHHH-----HHHHHhhhc-CCCChHHHHHHHHHHH
Q 007343 94 NPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVEY-----LVGPLGLGL-KDNNSYVRTVAVIGVL 160 (607)
Q Consensus 94 ~~el~~L-----~iNtl~kDl~~~n~~ir~lALr~l~~i~~--~e~~~~-----l~~~i~~~L-~d~~~~VRK~A~lal~ 160 (607)
+++.... ++..|.+-+.++++.+|..|+.+++++.. ++.... .++.+.+++ .++++.||+.|+.++.
T Consensus 149 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 149 TSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 6664332 67889999999999999999999999853 332222 456777888 7889999999999999
Q ss_pred HHHhhCCCCc--CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCCh
Q 007343 161 KLYHISAPTC--IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSE 238 (607)
Q Consensus 161 kl~~~~p~~~--~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~ 238 (607)
.+....|... ...+.++.|..+| .++|+.|+.+|+.+|..+....+.. ...++....+..|+..+...++
T Consensus 229 ~L~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~~~~~g~v~~Lv~lL~~~~~ 300 (528)
T 4b8j_A 229 NFCRGKPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDK-------IQAVIEAGVCPRLVELLLHPSP 300 (528)
T ss_dssp HHHCSSSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHH-------HHHHHHTTCHHHHHHHTTCSCH
T ss_pred HHHcCCCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHcCHHHHHHHHHcCCCh
Confidence 9987654422 1256888999984 8999999999999999997543210 0111222346778888888899
Q ss_pred hHHHHHHHHHhccCCCChhHHH-----HHHHHHHHHhccC-chHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHh
Q 007343 239 WAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLV 311 (607)
Q Consensus 239 w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~L~~~-n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll 311 (607)
..+...++.|......++.... .+++.+..+|++. ++.|..+|+.++..+....+.....+++ .+.++|+.++
T Consensus 301 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL 380 (528)
T 4b8j_A 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL 380 (528)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876654433 2467788888888 8999999999999887644432223332 4557788888
Q ss_pred ccCCchhHHHHHHHHHHHHhhC-CcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHH
Q 007343 312 SSGSPEQSYAVLSHLHILVMRA-PFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIA 390 (607)
Q Consensus 312 ~s~~~ni~y~~L~~i~~l~~~~-p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~ 390 (607)
.+++++++..++..+..++... |. .++ .+++. .++..|...+.+.|++++
T Consensus 381 ~~~~~~v~~~a~~aL~nl~~~~~~~-----------------~~~--------~l~~~----~~i~~L~~lL~~~d~~v~ 431 (528)
T 4b8j_A 381 QTAEFDIKKEAAWAISNATSGGSHD-----------------QIK--------YLVSE----GCIKPLCDLLICPDIRIV 431 (528)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCHH-----------------HHH--------HHHHT----TCHHHHHHGGGCSCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCHH-----------------HHH--------HHHHC----CCHHHHHHHHcCCCHHHH
Confidence 8889999999999999888662 21 011 01111 234444556666677777
Q ss_pred HHHHHHHHHHHcccCC-----------h------HHHHHHHHHhhhhcCchhhHHHHHHHHHH
Q 007343 391 RESIRAVGKIALQQYD-----------V------NAIVDRLLQFLEMEKDYVTAEALVLVKDL 436 (607)
Q Consensus 391 ~~~i~~I~~la~k~~~-----------~------~~~v~~ll~ll~~~~~~v~~e~i~~i~~i 436 (607)
..++.+++.+....+. . ...++.+..+....++.+..-+...+..+
T Consensus 432 ~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 432 TVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7777777666543211 0 11356667766655544444444444433
No 23
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.36 E-value=3.2e-10 Score=131.21 Aligned_cols=466 Identities=12% Similarity=0.069 Sum_probs=276.5
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHh-----h--HHHHH
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----L--VEYLV 137 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e-----~--~~~l~ 137 (607)
.+.+++.+++++...++.. +.+..+. ...++..-++..|.+-+.++++.+|..|+.+|+++...+ + .+..+
T Consensus 117 i~~lv~~L~~~~~~~r~~a-~~~l~~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAV-VNLINYQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHHH-HHHHHhh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 4667777788776665532 2222222 223555567888888888999999999999999985321 1 12456
Q ss_pred HHHhhhcCC-CChHHHHHHHHHHHHHHhhC--CCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhh
Q 007343 138 GPLGLGLKD-NNSYVRTVAVIGVLKLYHIS--APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (607)
Q Consensus 138 ~~i~~~L~d-~~~~VRK~A~lal~kl~~~~--p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~ 214 (607)
+.+.+.|.+ .++.+|+.|+.++.++.... .+.+.+.+.++.|.++| .++++.|+..|+.+|..++...+..
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~----- 268 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML-GSPVDSVLFHAITTLHNLLLHQEGA----- 268 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTH-----
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCChhh-----
Confidence 666666654 48999999999999975421 11222357889999984 8889999999999999998764321
Q ss_pred hhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHH-----HHHHHHHHHhccCchHHH-HHHHHHHHhh
Q 007343 215 REREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVV-LSTIKVFLHL 288 (607)
Q Consensus 215 ~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~L~~~n~aVv-~~ai~~i~~l 288 (607)
...+.....+..|++.+...++-.+...++.|..+...+++... ..++.+..++++.++..+ ..|+.++..+
T Consensus 269 --~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 269 --KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp --HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 01111123566777777666655566655566554433333222 235566667777665444 4556666666
Q ss_pred cCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc--cccccceee-eccCCCHhHHHHHHHHHHH
Q 007343 289 TLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI--FASDYKHFY-CQYNEPSYVKKLKLEMLTA 364 (607)
Q Consensus 289 ~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~--~~~~~~~f~-~~~~d~~~Ik~~kL~iL~~ 364 (607)
... +..+..+++ .+.++|+.++.+.++.++..++..+..++...+.. ...-+..+. ...+++..+|..+..+|..
T Consensus 347 s~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 347 SVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp HTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 543 223333332 24567788888888888988999888888665432 111111111 1234556699999999999
Q ss_pred ccCCC--CHH-----HHHHHHHHHhhc-CC-HHHHHHHHHHHHHHHcccCCh---------HHHHHHHHHhhhhcCc-hh
Q 007343 365 VANES--NTY-----EIVTELCEYAAN-VD-IPIARESIRAVGKIALQQYDV---------NAIVDRLLQFLEMEKD-YV 425 (607)
Q Consensus 365 l~n~~--N~~-----~Iv~eL~~y~~~-~d-~~~~~~~i~~I~~la~k~~~~---------~~~v~~ll~ll~~~~~-~v 425 (607)
|+... |.. ..+..|.+.+.+ .+ .+.+..++.+++.++...++. ...+..|++++....+ .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 98753 222 245666677765 33 489999999999998765542 1247889999988765 78
Q ss_pred hHHHHHHHHHHHHhCCCCch-----hHHHHHHhhhhccCCchHHHHHHHHHH----------------------hcccCC
Q 007343 426 TAEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWML----------------------GEYSQD 478 (607)
Q Consensus 426 ~~e~i~~i~~i~~~~p~~~~-----~~~~~l~~l~~~~~~~~~~~~~~iwil----------------------GEy~~~ 478 (607)
..++...+.++... +..+. .++..+.+++.. .+++.+..++|.+ |..+..
T Consensus 506 ~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~ 582 (780)
T 2z6g_A 506 IKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR--AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582 (780)
T ss_dssp HHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHH--HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHh--cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence 88888888888753 22121 122223333211 1223333334443 333211
Q ss_pred CCCh-----HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHHH-----HHHHhhcCCChhHHhHHHHHH
Q 007343 479 MQDA-----PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGA-----ALAAGLADFHQDVHDRALFYH 547 (607)
Q Consensus 479 i~~~-----~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~~-----~l~~~~~d~~~dvrdRA~~y~ 547 (607)
..+. ...+..+++-..... +.|+.....++..+. ..+ +.+..+.. .|.....+.|++||..|..-.
T Consensus 583 ~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~-~~~-~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL 658 (780)
T 2z6g_A 583 IHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELA-QDK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658 (780)
T ss_dssp HHHHHHHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHH-TSH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred hhhHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHh-cCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1000 012344555555555 889999998888875 332 33333322 233445688999998887644
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.33 E-value=6.3e-10 Score=122.07 Aligned_cols=436 Identities=11% Similarity=0.045 Sum_probs=247.2
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChH-h----hH--HHHHHHHhhhcCC-CChHHHHHHHHHHHHHHhhC
Q 007343 95 PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVA-N----LV--EYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHIS 166 (607)
Q Consensus 95 ~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~-e----~~--~~l~~~i~~~L~d-~~~~VRK~A~lal~kl~~~~ 166 (607)
++...-++..+.+-+.++|+.+|..|+.+++++... + +. +..++.+.+.|.+ +++.+|+.|+.++.++....
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 445555788888888999999999999999988432 1 12 2456677777754 58999999999999975421
Q ss_pred --CCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHH
Q 007343 167 --APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLV 244 (607)
Q Consensus 167 --p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~i 244 (607)
...+.+.+.++.|.++| .++|+.|+..|+.+|..++..++.. ...+.....+..|++.+...++-.+...
T Consensus 92 ~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTH-------HHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcch-------HHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 11122357888999984 8999999999999999998764321 1111122356777777777776667766
Q ss_pred HHHHhccCCCChhHHH-----HHHHHHHHHhccCch-HHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCch
Q 007343 245 LELVAKYVPLDSNEIF-----DIMNLLEDRLQHANG-AVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPE 317 (607)
Q Consensus 245 L~lL~~~~~~~~~~~~-----~il~~l~~~L~~~n~-aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~n 317 (607)
...|..+...+++... ..++.+..++++.++ .+...+.+++..+... ++.+..+++ ...++|..++.+++++
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~ 242 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQR 242 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChH
Confidence 6677666544443322 234556666766554 4555667777777653 333333332 3456778888888888
Q ss_pred hHHHHHHHHHHHHhhCCccc--ccccceee-eccCCCHhHHHHHHHHHHHccCCC--CHHH-----HHHHHHHHhhc--C
Q 007343 318 QSYAVLSHLHILVMRAPFIF--ASDYKHFY-CQYNEPSYVKKLKLEMLTAVANES--NTYE-----IVTELCEYAAN--V 385 (607)
Q Consensus 318 i~y~~L~~i~~l~~~~p~~~--~~~~~~f~-~~~~d~~~Ik~~kL~iL~~l~n~~--N~~~-----Iv~eL~~y~~~--~ 385 (607)
++..++..+..+....|... ..-+..+. ...+++..++..+...|..++..+ |... .++.|.+.+.+ .
T Consensus 243 ~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC
Confidence 99888888888876543211 00011110 113344557777777777776642 2222 34455555554 2
Q ss_pred CHHHHHHHHHHHHHHHcccCChH---------HHHHHHHHhhhhcCc-hhhHHHHHHHHHHHHhCCCCchhH-----HHH
Q 007343 386 DIPIARESIRAVGKIALQQYDVN---------AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDC-----IAV 450 (607)
Q Consensus 386 d~~~~~~~i~~I~~la~k~~~~~---------~~v~~ll~ll~~~~~-~v~~e~i~~i~~i~~~~p~~~~~~-----~~~ 450 (607)
+.+.+..++.+++.++...++.. ..+..+++++....+ .+..++...+.++... |+.+... +..
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~ 401 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPR 401 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHH
Confidence 36777777778877776544321 235667777776553 5666666677777653 3322211 122
Q ss_pred HHhhhhccCCchHHHHHHHHHHhc--ccCCCCChHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchhHHHHH---
Q 007343 451 VGSISSQNVQEPKAKAALIWMLGE--YSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLG--- 525 (607)
Q Consensus 451 l~~l~~~~~~~~~~~~~~iwilGE--y~~~i~~~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~--- 525 (607)
+.+++.+ .+++.+..++|.++. +.... .+ .+++...+.++..+.. .++..+.+..
T Consensus 402 L~~ll~~--~~~~v~~~a~~~l~n~~~~~~~----------------~~-~~i~~~~~~al~~L~~-~~~~~~~l~~~~~ 461 (529)
T 1jdh_A 402 LVQLLVR--AHQDTQRRTSMGGTQQQFVEGV----------------RM-EEIVEGCTGALHILAR-DVHNRIVIRGLNT 461 (529)
T ss_dssp HHHHHHH--HHHHHC-----------CBTTB----------------CH-HHHHHHHHHHHHHHTT-SHHHHHHHHHTTC
T ss_pred HHHHHHH--HhHHHHHHHhcccCchhhhccc----------------cH-HHHHHHHHHHHHHHhc-CchHHHHHhccCC
Confidence 2222211 345566667777765 22211 11 3344455556555532 2221111111
Q ss_pred -HHHHHhhcCCChhHHhHHHHHHHHccCCHHHHhhh
Q 007343 526 -AALAAGLADFHQDVHDRALFYHRLLQYNVSVAERV 560 (607)
Q Consensus 526 -~~l~~~~~d~~~dvrdRA~~y~~Ll~~~~~~~~~i 560 (607)
..|-....+.++++|..|..-..-+..+++..+.+
T Consensus 462 v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i 497 (529)
T 1jdh_A 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497 (529)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred ccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 22333345778899988876544344454444333
No 25
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.33 E-value=1.2e-09 Score=132.56 Aligned_cols=463 Identities=11% Similarity=0.081 Sum_probs=282.5
Q ss_pred CChHHHHHHHHHHHHHHhcC---CC---cchhhhhhhhhccCCCchhHHHHHHHHHhhccCCCh-HHHHHHHHHHHHcCC
Q 007343 39 GIDDSKRELFKKVISYMTIG---ID---VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD-LALLTINFLQRDCKD 111 (607)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G---~d---~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~e-l~~L~iNtl~kDl~~ 111 (607)
.+.+.|+.++..+.-..... .+ ...+.+.+++.+.+++...|+.+...+..++..-++ ..--+++.+.+.+.|
T Consensus 18 ~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d 97 (1230)
T 1u6g_C 18 SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 45577888877766544322 11 224556667888899999999999999988865554 334567888899999
Q ss_pred CCHHHHHHHHHHhhcCC---hH---------hhHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhCCCCcCC--CCch
Q 007343 112 EDPMIRGLALRSLCSLR---VA---------NLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCID--ADFP 176 (607)
Q Consensus 112 ~n~~ir~lALr~l~~i~---~~---------e~~~~l~~~i~~~L~-d~~~~VRK~A~lal~kl~~~~p~~~~~--~~~~ 176 (607)
+++.+|..|..+++.+. .+ ...+.++|.+.+++. ++++.||..|+.++..+....++.+.. +.++
T Consensus 98 ~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll 177 (1230)
T 1u6g_C 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSIL 177 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999999988888763 12 267889999999998 488999999999999999877765521 2345
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChh----HHHHHHHHHhccC
Q 007343 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEW----AQCLVLELVAKYV 252 (607)
Q Consensus 177 ~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w----~qi~iL~lL~~~~ 252 (607)
+.+... +.|+++.|+..|+.++..+....++. .+ ..++..+++.+...++| .-+..+..+....
T Consensus 178 ~~l~~~-L~~~~~~vR~~a~~al~~l~~~~~~~----------~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 178 TCLLPQ-LTSPRLAVRKRTIIALGHLVMSCGNI----------VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp HHHGGG-GGCSSHHHHHHHHHHHHHHTTTC--------------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred HHHHHH-HcCCcHHHHHHHHHHHHHHHHhcCHH----------HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 555565 47899999999999999987654321 11 12344454444322222 1233333333322
Q ss_pred CCCh-hHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcc-hhHHHHHHHHHHHHHHHhcc-----------------
Q 007343 253 PLDS-NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVHQQVYERIKAPLLTLVSS----------------- 313 (607)
Q Consensus 253 ~~~~-~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~-~~~~~~~~~l~~~L~~ll~s----------------- 313 (607)
+..- .....+++.+...++..++.|.-.|..++..+....+ ++. ..+..+.+.+...+..
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~ 324 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY-PHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 324 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHTTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHH-HhHHHHHHHHHHHhCCCCCCCCccccccccccc
Confidence 2100 1123477777777777777665555555443332111 111 2334444444443321
Q ss_pred --------------------CCchhHHHHHHHHHHHHhhCCccccccccee----e-eccCCCHhHHHHHHHHHHHccCC
Q 007343 314 --------------------GSPEQSYAVLSHLHILVMRAPFIFASDYKHF----Y-CQYNEPSYVKKLKLEMLTAVANE 368 (607)
Q Consensus 314 --------------------~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f----~-~~~~d~~~Ik~~kL~iL~~l~n~ 368 (607)
...++|..+...+..++...|+.|.+++..+ . ...+....+|...++.+..++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 404 (1230)
T 1u6g_C 325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 1134688999999998887776555544321 1 11233356998888877666531
Q ss_pred -------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC-----hHHHHHHHHHhh
Q 007343 369 -------------------------SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFL 418 (607)
Q Consensus 369 -------------------------~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~-----~~~~v~~ll~ll 418 (607)
..+..|++-+...+.+.+...+..++.+++.++...++ ...++..+++.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L 484 (1230)
T 1u6g_C 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL 484 (1230)
T ss_dssp HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred hccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHH
Confidence 11223444444557788888888899999999887654 135778888888
Q ss_pred hhcCc--hhhHHHHHHHHHHHHhCC-CCch-hHHHHHHhhh--hccCCchHHHHHHHHHHhcccCCCC--------C---
Q 007343 419 EMEKD--YVTAEALVLVKDLLRKYP-QWSH-DCIAVVGSIS--SQNVQEPKAKAALIWMLGEYSQDMQ--------D--- 481 (607)
Q Consensus 419 ~~~~~--~v~~e~i~~i~~i~~~~p-~~~~-~~~~~l~~l~--~~~~~~~~~~~~~iwilGEy~~~i~--------~--- 481 (607)
..... .+..+++..+..++...+ +... +.-.++..++ .++ ..+.++..+++.+|+...... .
T Consensus 485 ~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d-~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 563 (1230)
T 1u6g_C 485 NDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGD-PFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 563 (1230)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 76643 566777777777776443 2111 1111222221 011 234444555555555442211 1
Q ss_pred -hHHHHHHHHHhh--hcCCcHHHHHHHHHHHHHHhhcC
Q 007343 482 -APYILESLTENW--EEEPSAEVRLHLLTAVMKCFFKR 516 (607)
Q Consensus 482 -~~~~l~~l~~~f--~~e~~~~vk~~iLta~~Kl~~~~ 516 (607)
.+.++..+...+ .+.+ +++|...+.++..+....
T Consensus 564 ~~~~ll~~ll~~l~~~d~~-~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKAADID-QEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHHHHHHHHSCSSSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHh
Confidence 345677777777 4455 899998888888877654
No 26
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.30 E-value=1.4e-09 Score=123.18 Aligned_cols=443 Identities=11% Similarity=0.048 Sum_probs=274.2
Q ss_pred ChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHh-----hH--HHHHHHHhhhcCC-CChHHHHHHHHHHHHHHhhC
Q 007343 95 PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LV--EYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHIS 166 (607)
Q Consensus 95 ~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e-----~~--~~l~~~i~~~L~d-~~~~VRK~A~lal~kl~~~~ 166 (607)
+++..-++..+.+-+.++++.+|..|+.+++++...+ +. +..++.+.+.|.+ .++.||+.|+.++..+....
T Consensus 9 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp ---CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 3444456777888888999999999999999874321 11 2456677777765 48999999999998765321
Q ss_pred C--CCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHH
Q 007343 167 A--PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLV 244 (607)
Q Consensus 167 p--~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~i 244 (607)
. ..+.+.+.++.|.++| .++|+.|+..|+.+|..++...+.. ...+.....+..|++.+...++-.+...
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~-------~~~v~~~g~i~~Lv~lL~~~~~~~~~~a 160 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAIT 160 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSTTH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCcchh-------HHHHHHCCChHHHHHHHCcCCHHHHHHH
Confidence 1 1122357889999984 8899999999999999998764321 1111222357778887777776666666
Q ss_pred HHHHhccCCCChhHHHH-----HHHHHHHHhccCc-hHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCch
Q 007343 245 LELVAKYVPLDSNEIFD-----IMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPE 317 (607)
Q Consensus 245 L~lL~~~~~~~~~~~~~-----il~~l~~~L~~~n-~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~n 317 (607)
++.|..+...+++.... .++.+..++++.+ ..+...|++++..+... +..+..+++ .+.++|..++.++++.
T Consensus 161 ~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~ 239 (644)
T 2z6h_A 161 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQR 239 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHH
T ss_pred HHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHH
Confidence 66776665444443332 3566777777655 45667788888777653 333433433 2456778888888899
Q ss_pred hHHHHHHHHHHHHhhCCcc--ccccccee-eeccCCCHhHHHHHHHHHHHccCCC--CHHH-----HHHHHHHHhhcC-C
Q 007343 318 QSYAVLSHLHILVMRAPFI--FASDYKHF-YCQYNEPSYVKKLKLEMLTAVANES--NTYE-----IVTELCEYAANV-D 386 (607)
Q Consensus 318 i~y~~L~~i~~l~~~~p~~--~~~~~~~f-~~~~~d~~~Ik~~kL~iL~~l~n~~--N~~~-----Iv~eL~~y~~~~-d 386 (607)
++..++..+..+....+.. ...-+..+ -...+++..++..+...|..|+... |... .++.|.+.+.+. +
T Consensus 240 ~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~ 319 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 319 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCC
Confidence 9999999998887655431 11111111 1223445669999999999998753 3332 456677777763 3
Q ss_pred -HHHHHHHHHHHHHHHcccCCh---------HHHHHHHHHhhhhcC-chhhHHHHHHHHHHHHhCCCCchh-----HHHH
Q 007343 387 -IPIARESIRAVGKIALQQYDV---------NAIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWSHD-----CIAV 450 (607)
Q Consensus 387 -~~~~~~~i~~I~~la~k~~~~---------~~~v~~ll~ll~~~~-~~v~~e~i~~i~~i~~~~p~~~~~-----~~~~ 450 (607)
++++..++.+++.++...++. ...+..+++++.... ..+..++...+.++....+ .+.. ++..
T Consensus 320 ~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~ 398 (644)
T 2z6h_A 320 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPR 398 (644)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHH
Confidence 789999999999998765531 136788999998765 3788888888888865322 2221 2222
Q ss_pred HHhhhhccCCchHHHHHHHHHHhc--ccCCCC--------------------ChH-----HHHHHHHHhhhcCCcHHHHH
Q 007343 451 VGSISSQNVQEPKAKAALIWMLGE--YSQDMQ--------------------DAP-----YILESLTENWEEEPSAEVRL 503 (607)
Q Consensus 451 l~~l~~~~~~~~~~~~~~iwilGE--y~~~i~--------------------~~~-----~~l~~l~~~f~~e~~~~vk~ 503 (607)
+.+++.+ .+++.+..++|.+|. +.+... +.. ..+..+++-..... +.++.
T Consensus 399 Lv~lL~~--~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~ 475 (644)
T 2z6h_A 399 LVQLLVR--AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQR 475 (644)
T ss_dssp HHHHHHH--HHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSC-HHHHH
T ss_pred HHHHHhc--cchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCC-HHHHH
Confidence 3333211 123344444555554 221110 000 12334444444455 88998
Q ss_pred HHHHHHHHHhhcCCchhHHHHH-----HHHHHhhcCCChhHHhHHHHHHHHccC
Q 007343 504 HLLTAVMKCFFKRPPETQKVLG-----AALAAGLADFHQDVHDRALFYHRLLQY 552 (607)
Q Consensus 504 ~iLta~~Kl~~~~p~~~~~~~~-----~~l~~~~~d~~~dvrdRA~~y~~Ll~~ 552 (607)
....++.++.. .+ +....+. ..|.....+.|++||..|..-..-+..
T Consensus 476 ~a~~aL~~l~~-~~-~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 476 VAAGVLCELAQ-DK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHHHHT-SH-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CH-HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 88888888763 32 3333332 234455678899999998875544444
No 27
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.28 E-value=7e-09 Score=120.76 Aligned_cols=443 Identities=12% Similarity=0.078 Sum_probs=272.2
Q ss_pred hhhhhccCCCchhHHHHHHHHHhhccCC-ChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC------------------
Q 007343 67 EMVMCSATSDIVLKKMCYLYVGNYAKVN-PDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------------ 127 (607)
Q Consensus 67 ~vi~l~~s~~~~~Krl~YL~l~~~~~~~-~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i------------------ 127 (607)
+++....++|-..|+-+--++..+...+ ++......+.+.. .+.++.+|..|...+.+.
T Consensus 5 ~~L~~~~s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 5 TILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhC--CCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 4455556777778887777777765432 3332233333321 124678888887776652
Q ss_pred ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC-C-CCcCCCCchHHHHHhhcCCC--ChhHHHHHHHHHHHHH
Q 007343 128 RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-A-PTCIDADFPPTLKHLMLNDP--DPQVVANCLSALQEIW 203 (607)
Q Consensus 128 ~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~-p-~~~~~~~~~~~L~~lLl~D~--d~~V~~~a~~~L~ei~ 203 (607)
-.++....+.+.+.+++.++++.+ ++++.++..+.+.+ | +.. +++++.+...+ .++ ++.++..|+.++..+.
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w--~~ll~~l~~~l-~~~~~~~~~r~~al~~l~~l~ 158 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQW--PELIPQLVANV-TNPNSTEHMKESTLEAIGYIC 158 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCC--TTHHHHHHHHH-HCTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCccccc--HHHHHHHHHHH-hCCCCCHHHHHHHHHHHHHHH
Confidence 123445555666778888999999 99999999988764 4 222 56788888875 777 8999999999999988
Q ss_pred hhccccchhhhhhHhhhcchHHHHHHHhhcCCC--ChhHHHHHHHHHhccCCC------ChhHHHHHHHHHHHHhccCch
Q 007343 204 SLEASTSEEASREREALISKPVIYYLLNRIKEF--SEWAQCLVLELVAKYVPL------DSNEIFDIMNLLEDRLQHANG 275 (607)
Q Consensus 204 ~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~--~~w~qi~iL~lL~~~~~~------~~~~~~~il~~l~~~L~~~n~ 275 (607)
+...+ +...-....++..+.+.+.+. ++-.+...++.+..+... .......+++.+...+++.+.
T Consensus 159 ~~~~~-------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 231 (876)
T 1qgr_A 159 QDIDP-------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (876)
T ss_dssp HHSCH-------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HhcCH-------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH
Confidence 64210 000001122445555556555 455667777777653321 111122467777777877788
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCC--------------------
Q 007343 276 AVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-------------------- 334 (607)
Q Consensus 276 aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p-------------------- 334 (607)
.|...|++++..+....+..-...+. .+.+.+...+.+.+++++..+++.+..++...+
T Consensus 232 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (876)
T 1qgr_A 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTS 311 (876)
T ss_dssp HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchh
Confidence 88888888877665332221111223 445555556666788999999988877765421
Q ss_pred -cccccccce----e---eecc-----CCCHhHHHHHHHHHHHccC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 007343 335 -FIFASDYKH----F---YCQY-----NEPSYVKKLKLEMLTAVAN---ESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (607)
Q Consensus 335 -~~~~~~~~~----f---~~~~-----~d~~~Ik~~kL~iL~~l~n---~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~ 398 (607)
....+++.. + .+.. +|...+|..+.+.|..++. +.-+..+++-+...+.+.+...+..++.++|
T Consensus 312 ~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~ 391 (876)
T 1qgr_A 312 KFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFG 391 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 011111111 1 0111 2334688888777777653 3335667776777777888999999999999
Q ss_pred HHHcccC-C-h----HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCC---CchhHHHHHHhhhhccCCchHHHHHHH
Q 007343 399 KIALQQY-D-V----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ---WSHDCIAVVGSISSQNVQEPKAKAALI 469 (607)
Q Consensus 399 ~la~k~~-~-~----~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~---~~~~~~~~l~~l~~~~~~~~~~~~~~i 469 (607)
.++...+ + . ...+..++..+......|...+...+..+....+. .....-.++..++..--+.+.++..++
T Consensus 392 ~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~ 471 (876)
T 1qgr_A 392 CILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVC 471 (876)
T ss_dssp HTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998664 3 1 23566677777766667777778888888776543 122222233333211011377888889
Q ss_pred HHHhcccCC-------------------CCChHHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHhhcCCchhHH
Q 007343 470 WMLGEYSQD-------------------MQDAPYILESLTENWEEEP--SAEVRLHLLTAVMKCFFKRPPETQK 522 (607)
Q Consensus 470 wilGEy~~~-------------------i~~~~~~l~~l~~~f~~e~--~~~vk~~iLta~~Kl~~~~p~~~~~ 522 (607)
|.+|.++.. .+..+.++..+.+.+.... ...+|...+.++..+....+.+..+
T Consensus 472 ~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~ 545 (876)
T 1qgr_A 472 WAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYP 545 (876)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHH
T ss_pred HHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHH
Confidence 988876532 2235667777776665431 1578888898888887766654443
No 28
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.23 E-value=7.2e-09 Score=116.72 Aligned_cols=386 Identities=10% Similarity=0.106 Sum_probs=247.5
Q ss_pred hhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC--ChHhhHHHHHHHHhhhcCCCChHHHHHH
Q 007343 78 VLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVA 155 (607)
Q Consensus 78 ~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i--~~~e~~~~l~~~i~~~L~d~~~~VRK~A 155 (607)
.++|+.|+...-+ .-+.+.. .+.|-++++|...|-++--+++.+ ..+|.+-.++..+++-++|++|+||--|
T Consensus 58 ~l~Kli~l~~~G~--d~s~~~~----~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lA 131 (621)
T 2vgl_A 58 YVCKLLFIFLLGH--DIDFGHM----EAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLA 131 (621)
T ss_dssp HHHHHHHHHHHSC--CCCSCHH----HHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCchhHH----HHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4778988876543 2333322 233467899999998887777776 3478888888999999999999999999
Q ss_pred HHHHHHHHhhCCCCcCCCCchHHHHHhhc--CCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc
Q 007343 156 VIGVLKLYHISAPTCIDADFPPTLKHLML--NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI 233 (607)
Q Consensus 156 ~lal~kl~~~~p~~~~~~~~~~~L~~lLl--~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l 233 (607)
+-++.++. .|+.. +.+.+.+.++ + .|++|.|+-.|+.++..+.+.+|+.- + ....+..+.+.+
T Consensus 132 Lr~L~~i~--~~e~~--~~l~~~v~~~-l~~~d~~~~VRK~A~~al~kl~~~~p~~~----~------~~~~~~~l~~lL 196 (621)
T 2vgl_A 132 LHCIANVG--SREMA--EAFAGEIPKI-LVAGDTMDSVKQSAALCLLRLYRTSPDLV----P------MGDWTSRVVHLL 196 (621)
T ss_dssp HHHHHHHC--CHHHH--HHHTTHHHHH-HHCSSSCHHHHHHHHHHHHHHHHHCGGGC----C------CCSCHHHHHHHT
T ss_pred HHHhhccC--CHHHH--HHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHhChhhc----C------chhHHHHHHHHh
Confidence 99999984 56665 4677888887 6 89999999999999999998776421 1 012456666777
Q ss_pred CCCChhHHHHHHHHHhccCCCChhHH----HHHHHHHHHHhccC-------------chHHHHHHHHHHHhhcCC-cchh
Q 007343 234 KEFSEWAQCLVLELVAKYVPLDSNEI----FDIMNLLEDRLQHA-------------NGAVVLSTIKVFLHLTLS-MTDV 295 (607)
Q Consensus 234 ~~~~~w~qi~iL~lL~~~~~~~~~~~----~~il~~l~~~L~~~-------------n~aVv~~ai~~i~~l~~~-~~~~ 295 (607)
.+.++-.+...+.++...++.+++.. ..+++.+..++... ++=.....++++-.+.+. .++.
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~ 276 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV 276 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHH
Confidence 88999999888888888776666532 22334444444321 466667777777777653 2333
Q ss_pred HHHHHHHHHHHHHHHhcc---CC-------chh-HHHHHHHHHHHHhhCC--ccccc---ccceeeeccCCCHhHHHHHH
Q 007343 296 HQQVYERIKAPLLTLVSS---GS-------PEQ-SYAVLSHLHILVMRAP--FIFAS---DYKHFYCQYNEPSYVKKLKL 359 (607)
Q Consensus 296 ~~~~~~~l~~~L~~ll~s---~~-------~ni-~y~~L~~i~~l~~~~p--~~~~~---~~~~f~~~~~d~~~Ik~~kL 359 (607)
... +...|-.++++ .. .|. .-+.++.+..++.-.| .+... .+..| +..+| .-+|..+|
T Consensus 277 ~~~----l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~-L~~~~-~niry~aL 350 (621)
T 2vgl_A 277 RGR----LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQF-LQHRE-TNLRYLAL 350 (621)
T ss_dssp HHH----HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-SSCSC-HHHHHHHH
T ss_pred HHH----HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hcCCC-cchHHHHH
Confidence 222 22223333311 11 121 1333444444443333 22211 11122 23344 45999999
Q ss_pred HHHHHccCCCC----HHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHHH
Q 007343 360 EMLTAVANESN----TYEIVTELCEYAA-NVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVK 434 (607)
Q Consensus 360 ~iL~~l~n~~N----~~~Iv~eL~~y~~-~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i~ 434 (607)
+.|..++.... +......+...+. +.|.++++.++..+..++.. .+....+..|.+.+......+..+++..|.
T Consensus 351 ~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~-~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~ 429 (621)
T 2vgl_A 351 ESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR-SNAQQIVAEMLSYLETADYSIREEIVLKVA 429 (621)
T ss_dssp HHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh-hhHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999987653 2233344445566 88999999998888877633 124568888889888887888999999999
Q ss_pred HHHHhCCCCchhHHHHHHhhhh--ccCCchHHHHHHHHHHhcccCCCCChHHHHHHHHHhhh
Q 007343 435 DLLRKYPQWSHDCIAVVGSISS--QNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWE 494 (607)
Q Consensus 435 ~i~~~~p~~~~~~~~~l~~l~~--~~~~~~~~~~~~iwilGEy~~~i~~~~~~l~~l~~~f~ 494 (607)
.+..+||.....++..+.+++. ...-..++...+.-++.+..+. -.+.+..+++.+.
T Consensus 430 ~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~---~~~~~~~l~~~l~ 488 (621)
T 2vgl_A 430 ILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDV---QGYAAKTVFEALQ 488 (621)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSC---HHHHHHHHHHHHT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhH---HHHHHHHHHHHHc
Confidence 9999999877777766666652 1222334444455555544221 2344555555444
No 29
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.22 E-value=3.6e-10 Score=108.94 Aligned_cols=186 Identities=18% Similarity=0.145 Sum_probs=136.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHH
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~ 180 (607)
+++.+.+.+.|+|+.+|..|++.++.++.++..+. +.+.+.|+++.||..|+.++.++.. ++.++.|.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~----L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~ 87 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEP----LIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLI 87 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHH----HHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHH
Confidence 46677778888999999999999998888765554 4467778899999999998888741 34667788
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHH
Q 007343 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (607)
Q Consensus 181 ~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~ 260 (607)
++ +.|+|+.|+.+|+.+|..+... ..+..|...+.+.+++.+...++.|..+...
T Consensus 88 ~~-l~~~~~~vr~~a~~aL~~~~~~------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------ 142 (211)
T 3ltm_A 88 KA-LKDEDGWVRQSAAVALGQIGDE------------------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------ 142 (211)
T ss_dssp HH-TTCSSHHHHHHHHHHHHHHCCG------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------
T ss_pred HH-HcCCCHHHHHHHHHHHHHhCcH------------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------
Confidence 87 4888999999988888876421 1245566667788888888888888887532
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhC
Q 007343 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (607)
Q Consensus 261 ~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~ 333 (607)
..++.+...+++.++.|..+|+..+..+... .+.+.|..+++++++++|..+.+.+..+....
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIGGE----------RVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH----------HHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCch----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 2456677778888888999998888877541 12345566677788889998888887766543
No 30
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.20 E-value=1.2e-09 Score=117.32 Aligned_cols=252 Identities=11% Similarity=0.057 Sum_probs=157.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcCCh---HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCC-----------
Q 007343 102 INFLQRDCKDEDPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA----------- 167 (607)
Q Consensus 102 iNtl~kDl~~~n~~ir~lALr~l~~i~~---~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p----------- 167 (607)
+..+...+.++|+.+|..|-..+..+.. +++...+...+.. .+.++.||..|+..+-++.+.+.
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 3455666789999999999888887654 5555555544332 23478999999999988854320
Q ss_pred CCcC---CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCC--ChhHHH
Q 007343 168 PTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF--SEWAQC 242 (607)
Q Consensus 168 ~~~~---~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~--~~w~qi 242 (607)
..+. ...+.+.|...| .++++.| ..+..++.+|....... ..| +..+..|+..+.+. ++-.+.
T Consensus 81 ~~l~~~~~~~ik~~ll~~l-~~~~~~v-~~~~~~i~~ia~~~~~~------~~w----~~ll~~L~~~l~~~~~~~~~r~ 148 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTL-GTETYRP-SSASQCVAGIACAEIPV------NQW----PELIPQLVANVTNPNSTEHMKE 148 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHT-TCCCSSS-CSHHHHHHHHHHHHGGG------TCC----TTHHHHHHHHHHCTTCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHh-CCCCchh-hHHHHHHHHHHHHhccc------ccc----HHHHHHHHHHhccCCCCHHHHH
Confidence 0111 012334455553 6777888 77888888887653110 011 12455566666555 555555
Q ss_pred HHHHHHhccC----CC-ChhHHHHHHHHHHHHhccC--chHHHHHHHHHHHhhcCCcch-hH-HHHHHHHHHHHHHHhcc
Q 007343 243 LVLELVAKYV----PL-DSNEIFDIMNLLEDRLQHA--NGAVVLSTIKVFLHLTLSMTD-VH-QQVYERIKAPLLTLVSS 313 (607)
Q Consensus 243 ~iL~lL~~~~----~~-~~~~~~~il~~l~~~L~~~--n~aVv~~ai~~i~~l~~~~~~-~~-~~~~~~l~~~L~~ll~s 313 (607)
..+..|..++ +. -......+++.+...+++. ++.|..+|++++..+.....+ .. ....+-+.+.|..++.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 5666555432 11 1223456778888888887 788999999998775432211 10 00111234445566777
Q ss_pred CCchhHHHHHHHHHHHHhhCCcccccccc-eee-----eccCCCHhHHHHHHHHHHHccC
Q 007343 314 GSPEQSYAVLSHLHILVMRAPFIFASDYK-HFY-----CQYNEPSYVKKLKLEMLTAVAN 367 (607)
Q Consensus 314 ~~~ni~y~~L~~i~~l~~~~p~~~~~~~~-~f~-----~~~~d~~~Ik~~kL~iL~~l~n 367 (607)
.++++|-.+++.+..++..+|..|.+++. .++ +..+++..+|..+++.+..++.
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~ 288 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 88999999999999999999988877765 322 2234445688888887777664
No 31
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.19 E-value=8e-10 Score=105.63 Aligned_cols=183 Identities=19% Similarity=0.181 Sum_probs=132.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHH
Q 007343 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (607)
Q Consensus 100 L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L 179 (607)
-....+.+.+.|+|+.+|..|++.++.++.++.++ .+.+.+.|+++.||..|+.++.++. .++.++.|
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~~L~~~~--------~~~~~~~L 81 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIG--------DERAVEPL 81 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHH----HHHHHHcCCCHHHHHHHHHHHHhhC--------CHHHHHHH
Confidence 45677888888888888888888888888766544 4446667888888888888888773 13456777
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHH
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~ 259 (607)
.++ +.|+|+.|+..|+.+|..+... ..+..|...+.+.+++.+...++.|..+...
T Consensus 82 ~~~-l~d~~~~vr~~a~~aL~~~~~~------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----- 137 (201)
T 3ltj_A 82 IKA-LKDEDGWVRQSAAVALGQIGDE------------------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----- 137 (201)
T ss_dssp HHH-TTCSSHHHHHHHHHHHHHHCCG------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-----
T ss_pred HHH-HcCCCHHHHHHHHHHHHHhCcH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-----
Confidence 777 4888888888888888776421 1244555666778888888888888877532
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Q 007343 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (607)
Q Consensus 260 ~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l 329 (607)
..++.+...+.+.++.|..+|+..+..++.. ...+.|..+++++++.+|..+.+.+..+
T Consensus 138 -~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 138 -RAVEPLIKALKDEDGWVRQSAADALGEIGGE----------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -GGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH----------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHhCch----------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2456677777888888888888888877532 1234556667778888888888877654
No 32
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.18 E-value=9.5e-09 Score=117.63 Aligned_cols=401 Identities=14% Similarity=0.104 Sum_probs=272.6
Q ss_pred hhhhhh-hccCCCchhHHHHHHHHHhhccCCChHHHH------HHHHHHHHcCCCCHHHHHHHHHHhhcCChHh-----h
Q 007343 65 FGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALL------TINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----L 132 (607)
Q Consensus 65 f~~vi~-l~~s~~~~~Krl~YL~l~~~~~~~~el~~L------~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e-----~ 132 (607)
|.+.|+ .+..++...|-.+.-+++.++...+|..-- ++..|.+-++|+++.++..|+.+++++.... +
T Consensus 248 ~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I 327 (810)
T 3now_A 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKAL 327 (810)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTT
T ss_pred HHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 334443 456788888888888999999988887442 3688888899999999999998888875532 3
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhh---CCC--CcCC---CCchHHHHHhhcCCC--ChhHHHHHHHHHHHH
Q 007343 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI---SAP--TCID---ADFPPTLKHLMLNDP--DPQVVANCLSALQEI 202 (607)
Q Consensus 133 ~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~---~p~--~~~~---~~~~~~L~~lLl~D~--d~~V~~~a~~~L~ei 202 (607)
.+.-.+.+..++.++++.+|..|+.++.|+... +|. .+.+ ..+++.+.++| .++ |+.++.+|+-+|..+
T Consensus 328 ~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL-~~~~~d~~v~~~AveaLayL 406 (810)
T 3now_A 328 CEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFL-IKPGKDKDIRRWAADGLAYL 406 (810)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHH-HCSSCCSSHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHH
Confidence 333458888999999999999999999999742 222 2211 12356677876 555 899999999999999
Q ss_pred HhhccccchhhhhhHhhhc-chHHHHHHHhhcCCCChhHHHHHHHHHhccCCCCh-h-----------------------
Q 007343 203 WSLEASTSEEASREREALI-SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS-N----------------------- 257 (607)
Q Consensus 203 ~~~~~~~~~~~~~~~~~li-~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~-~----------------------- 257 (607)
..... .+ ..+. ....+..|+..+...++-.|...+..|.......+ +
T Consensus 407 S~~~~-----vk---~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~l 478 (810)
T 3now_A 407 TLDAE-----CK---EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHEL 478 (810)
T ss_dssp TTSHH-----HH---HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCH
T ss_pred hCCcH-----HH---HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcccccc
Confidence 75321 11 1122 23456777776666677788888888877654221 0
Q ss_pred ----HHH---------HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHH
Q 007343 258 ----EIF---------DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVL 323 (607)
Q Consensus 258 ----~~~---------~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L 323 (607)
... ..++.+..++++.++.|.-+|+.++..+... ++.+..+++ -..++|+.++.++++..|-.+.
T Consensus 479 d~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa 557 (810)
T 3now_A 479 DDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557 (810)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHH
Confidence 011 2466777888999999999999999999754 344444443 3567899999989999999999
Q ss_pred HHHHHHHhh-CCcc-cccc-----ccee-eeccCC-CHhHHHHHHHHHHHccCC--CCHHHHH-----HHHHHHhhcCCH
Q 007343 324 SHLHILVMR-APFI-FASD-----YKHF-YCQYNE-PSYVKKLKLEMLTAVANE--SNTYEIV-----TELCEYAANVDI 387 (607)
Q Consensus 324 ~~i~~l~~~-~p~~-~~~~-----~~~f-~~~~~d-~~~Ik~~kL~iL~~l~n~--~N~~~Iv-----~eL~~y~~~~d~ 387 (607)
..+..++.. .|.. |..+ +..+ ....+| +...+..++..|..|+.. ++...|+ +.|.+++.+.++
T Consensus 558 ~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~ 637 (810)
T 3now_A 558 QALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHL 637 (810)
T ss_dssp HHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCT
T ss_pred HHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCH
Confidence 999988754 4442 2211 1111 112333 444566889999998864 3444444 457788888888
Q ss_pred HHHHHHHHHHHHHHcccCCh------HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCc------hhHHHHHHhhh
Q 007343 388 PIARESIRAVGKIALQQYDV------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS------HDCIAVVGSIS 455 (607)
Q Consensus 388 ~~~~~~i~~I~~la~k~~~~------~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~------~~~~~~l~~l~ 455 (607)
.+++.+..+|+.++..-+.. ...+..|+.++......+..++...+.++...+++.. ..++..+..++
T Consensus 638 ~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL 717 (810)
T 3now_A 638 YLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717 (810)
T ss_dssp THHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988532111 1356778888887766777777777777766444321 12333444554
Q ss_pred hccCCchHHHHHHHHHHhcccC
Q 007343 456 SQNVQEPKAKAALIWMLGEYSQ 477 (607)
Q Consensus 456 ~~~~~~~~~~~~~iwilGEy~~ 477 (607)
. -.+++.+..++|.++....
T Consensus 718 ~--s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 718 A--NPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp T--CSSHHHHHHHHHHHHHHHT
T ss_pred C--CCCHHHHHHHHHHHHHHHh
Confidence 2 2567788888888877654
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.17 E-value=4.7e-09 Score=115.52 Aligned_cols=326 Identities=13% Similarity=0.112 Sum_probs=213.0
Q ss_pred CChHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcCChHhhHH-HHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhCCCC-
Q 007343 94 NPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSLRVANLVE-YLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPT- 169 (607)
Q Consensus 94 ~~el~~L~iNtl~kDl~-~~n~~ir~lALr~l~~i~~~e~~~-~l~~~i~~~L~-d~~~~VRK~A~lal~kl~~~~p~~- 169 (607)
+++..+-++..++|=+. .+||.+.. +++ -++|.+.++|. +.+|.|+..|+.|+..+...+++.
T Consensus 70 d~~~q~~a~~~~rklls~e~~ppi~~-------------ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 70 NLESQLQATQAARKLLSREKQPPIDN-------------IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CHHHHHHHHHHHHHHHTCSSCCCHHH-------------HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCchHHH-------------HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 34444556666666553 34554322 111 25667778776 456899999999999987655442
Q ss_pred --cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCC-----hhHHH
Q 007343 170 --CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS-----EWAQC 242 (607)
Q Consensus 170 --~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~-----~w~qi 242 (607)
+.+.+.++.|.++| .++++.|+..|+.+|..|+..++. +.+ .++....+..|+..+...+ ...+.
T Consensus 137 ~~vv~~GaIp~Lv~lL-~s~~~~v~e~A~~aL~nLa~d~~~-----~r~--~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~ 208 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLL-ASPHAHISEQAVWALGNIAGDGSA-----FRD--LVIKHGAIDPLLALLAVPDLSTLACGYLR 208 (510)
T ss_dssp HHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCHH-----HHH--HHHHTTCHHHHHHHTCSSCGGGSCHHHHH
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHH-----HHH--HHHHcCChHHHHHHHHhccchhhhHHHHH
Confidence 23467889999984 889999999999999999865442 111 1111123445555554332 22333
Q ss_pred HHHHHHhccCCC-----ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHH-HHHHHHHHHHhccCCc
Q 007343 243 LVLELVAKYVPL-----DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSP 316 (607)
Q Consensus 243 ~iL~lL~~~~~~-----~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~-~~l~~~L~~ll~s~~~ 316 (607)
.+...+...+.. .......+++.+..++++.++.|...|+.++.++.....+....+. ..+.+.|+.++.++++
T Consensus 209 ~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 288 (510)
T 3ul1_B 209 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 288 (510)
T ss_dssp HHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCCh
Confidence 344444433221 1223456788889999999999999999999988765443222222 2345668889999999
Q ss_pred hhHHHHHHHHHHHHhhCCcc----cccc-cceee-eccCCCHhHHHHHHHHHHHccCC--CCHH-----HHHHHHHHHhh
Q 007343 317 EQSYAVLSHLHILVMRAPFI----FASD-YKHFY-CQYNEPSYVKKLKLEMLTAVANE--SNTY-----EIVTELCEYAA 383 (607)
Q Consensus 317 ni~y~~L~~i~~l~~~~p~~----~~~~-~~~f~-~~~~d~~~Ik~~kL~iL~~l~n~--~N~~-----~Iv~eL~~y~~ 383 (607)
.++.-+++.+..++...+.. +... +..+. +..+.+..||..+.-.|..++.. .+.. .++.-|...+.
T Consensus 289 ~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~ 368 (510)
T 3ul1_B 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 368 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc
Confidence 99999999998887654321 1111 11221 23455567999999999998743 2233 24566788888
Q ss_pred cCCHHHHHHHHHHHHHHHcccCC--h-----HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhC
Q 007343 384 NVDIPIARESIRAVGKIALQQYD--V-----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY 440 (607)
Q Consensus 384 ~~d~~~~~~~i~~I~~la~k~~~--~-----~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~ 440 (607)
+.|.+++++++.+|+.++..... . ..++..|+++|+.....+..-++..+.+|++..
T Consensus 369 ~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 432 (510)
T 3ul1_B 369 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432 (510)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999875322 1 236888999998887777777777788777643
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.17 E-value=2.5e-08 Score=109.20 Aligned_cols=454 Identities=12% Similarity=0.037 Sum_probs=263.2
Q ss_pred hhhhhhhhccCCCchhHHHHHHHHHhhccCCChH-HH----HHHHHHHHHcC-CCCHHHHHHHHHHhhcCCh-HhhHH--
Q 007343 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDL-AL----LTINFLQRDCK-DEDPMIRGLALRSLCSLRV-ANLVE-- 134 (607)
Q Consensus 64 lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el-~~----L~iNtl~kDl~-~~n~~ir~lALr~l~~i~~-~e~~~-- 134 (607)
..+..++++.+++...+.-+-.++..++..++.. .+ -++..+.+-+. ++++.+|..|+++++++.. ++..+
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 3556677888888888888777777777543321 11 14556666665 4589999999999988743 22211
Q ss_pred ---HHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC---cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 007343 135 ---YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (607)
Q Consensus 135 ---~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~---~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~ 208 (607)
..++.+.+++.++++.||..|+.++.++...+++. +.+.+.++.|.++| .++++.+...+..+|..+...+++
T Consensus 98 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll-~~~~~~~~~~~~~~L~~la~~~~~ 176 (529)
T 1jdh_A 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQE 176 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHH-hcCCHHHHHHHHHHHHHHHhCCHH
Confidence 25677888999999999999999999998776542 11357889999985 888999999988888877653321
Q ss_pred cchhhhhhHhhhcchHHHHHHHhhcCCC-ChhHHHHHHHHHhccCC--CChhHH--HHHHHHHHHHhccCchHHHHHHHH
Q 007343 209 TSEEASREREALISKPVIYYLLNRIKEF-SEWAQCLVLELVAKYVP--LDSNEI--FDIMNLLEDRLQHANGAVVLSTIK 283 (607)
Q Consensus 209 ~~~~~~~~~~~li~~~~~~~Ll~~l~~~-~~w~qi~iL~lL~~~~~--~~~~~~--~~il~~l~~~L~~~n~aVv~~ai~ 283 (607)
. . ..+.....+..|++.+.+. .+..+.....+|..+.. ...... ...++.+..++++.++.++..|+.
T Consensus 177 ~----~---~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~ 249 (529)
T 1jdh_A 177 S----K---LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249 (529)
T ss_dssp H----H---HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHH
T ss_pred H----H---HHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHH
Confidence 1 0 0111111234444433323 33334344444444332 211111 135677778888889999999999
Q ss_pred HHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc----cccc-cc---eeeeccCCCHhHH
Q 007343 284 VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI----FASD-YK---HFYCQYNEPSYVK 355 (607)
Q Consensus 284 ~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~----~~~~-~~---~f~~~~~d~~~Ik 355 (607)
++..+....+.. .....+.+.|..++.+++++++..+...+..+....+.. .... +. .+....+++..++
T Consensus 250 ~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~ 327 (529)
T 1jdh_A 250 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327 (529)
T ss_dssp HHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHH
Confidence 988876543221 012245667888898899999999999998887654421 1111 11 1111224446699
Q ss_pred HHHHHHHHHccCCC-CH----H-----HHHHHHHHHhhcCC-HHHHHHHHHHHHHHHcccCChH-----HHHHHHHHhhh
Q 007343 356 KLKLEMLTAVANES-NT----Y-----EIVTELCEYAANVD-IPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLE 419 (607)
Q Consensus 356 ~~kL~iL~~l~n~~-N~----~-----~Iv~eL~~y~~~~d-~~~~~~~i~~I~~la~k~~~~~-----~~v~~ll~ll~ 419 (607)
..++..|..++... .. . ..++-|...+.+.+ .++++.++.+++.++..-.... ..+..+++++.
T Consensus 328 ~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~ 407 (529)
T 1jdh_A 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 407 (529)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHH
Confidence 99999999998642 11 1 23455667777765 5899999999999986432211 24666777766
Q ss_pred hcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCCCCh-----HHHHHHHHHhhh
Q 007343 420 MEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA-----PYILESLTENWE 494 (607)
Q Consensus 420 ~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i~~~-----~~~l~~l~~~f~ 494 (607)
.+...+..++...+.+.. + .+.....+.+..++..++..+...++. ...+..+.+-..
T Consensus 408 ~~~~~v~~~a~~~l~n~~----------------~-~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~ 470 (529)
T 1jdh_A 408 RAHQDTQRRTSMGGTQQQ----------------F-VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY 470 (529)
T ss_dssp HHHHHHC---------------------------C-BTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGG
T ss_pred HHhHHHHHHHhcccCchh----------------h-hccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHc
Confidence 544334443333332200 0 000011111111111222111110000 012344444444
Q ss_pred cCCcHHHHHHHHHHHHHHhhcCCchhHHHHH-----HHHHHhhcCCChhHHhHHHHHH
Q 007343 495 EEPSAEVRLHLLTAVMKCFFKRPPETQKVLG-----AALAAGLADFHQDVHDRALFYH 547 (607)
Q Consensus 495 ~e~~~~vk~~iLta~~Kl~~~~p~~~~~~~~-----~~l~~~~~d~~~dvrdRA~~y~ 547 (607)
+.. +.++.....++..+.. .+ +....+. ..|.....+.|++||.+|..-.
T Consensus 471 ~~~-~~v~~~a~~~l~~l~~-~~-~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL 525 (529)
T 1jdh_A 471 SPI-ENIQRVAAGVLCELAQ-DK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525 (529)
T ss_dssp CSC-HHHHHHHHHHHHHHTT-SH-HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHHHHHhc-CH-HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHH
Confidence 445 8888888877777653 22 2222221 2344456789999999987643
No 35
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.16 E-value=2.8e-09 Score=104.68 Aligned_cols=228 Identities=16% Similarity=0.082 Sum_probs=173.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCC--hHhhHH-----HHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC---c
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVE-----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---C 170 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~--~~e~~~-----~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~---~ 170 (607)
.+..+.+-+.++++.+|..|+.+++++. .++... ..++.+.+.+.++++.||..|+.++..+...+++. +
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 82 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 82 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 3567888889999999999999998873 232222 35677889999999999999999999997654432 2
Q ss_pred CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 007343 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (607)
Q Consensus 171 ~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~ 250 (607)
.+.+.++.+..+| .++|+.|+.+|+.+|..+...++.. . ..+.....+..|++.+.+.++..+...+..|..
T Consensus 83 ~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~----~---~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 83 VDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEA----I---KAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHH----H---HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHH----H---HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2347889999984 8999999999999999998644321 1 112222357778888888999999999999999
Q ss_pred cCCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHH
Q 007343 251 YVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLS 324 (607)
Q Consensus 251 ~~~~~~~~~~-----~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~ 324 (607)
....+++... ..++.+..++++.++.|...|+.++..+....+.....+.+ .+.+.|..++.+++++++..++.
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 234 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQR 234 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHH
Confidence 8876654432 26778888999999999999999999988654443333322 34567888998899999999999
Q ss_pred HHHHHHhhCCcc
Q 007343 325 HLHILVMRAPFI 336 (607)
Q Consensus 325 ~i~~l~~~~p~~ 336 (607)
.+..+....+.-
T Consensus 235 ~L~~l~~~~~~~ 246 (252)
T 4hxt_A 235 ALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHTCBCC
T ss_pred HHHHHHcCCCcc
Confidence 999999876553
No 36
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.14 E-value=7.2e-08 Score=109.03 Aligned_cols=439 Identities=14% Similarity=0.084 Sum_probs=273.5
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccCCChHHH-----HHHHHHHHHcCC-CCHHHHHHHHHHhhcCCh-HhhHH---
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFLQRDCKD-EDPMIRGLALRSLCSLRV-ANLVE--- 134 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~-----L~iNtl~kDl~~-~n~~ir~lALr~l~~i~~-~e~~~--- 134 (607)
.+..++++.+++...|.-+-..+..++...+.... -++..+.+-|.+ +++.+|..|++++.++.. ++...
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 56667888888999999988888888876553321 235667777765 489999999888887643 22211
Q ss_pred --HHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc---CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc
Q 007343 135 --YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (607)
Q Consensus 135 --~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~---~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~ 209 (607)
..++.+.+++.++++.||+.|+.++.++...+++.. .+.+.++.|.++| .++++.+...++.+|..+...++..
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH-CcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 256778889999999999999999999987754422 2367899999985 8888888888888888887533211
Q ss_pred chhhhhhHhhhcchHHHHHHHhhcCCCC-h---hHHHHHHHHHhccCCCChhHHH--HHHHHHHHHhccCchHHHHHHHH
Q 007343 210 SEEASREREALISKPVIYYLLNRIKEFS-E---WAQCLVLELVAKYVPLDSNEIF--DIMNLLEDRLQHANGAVVLSTIK 283 (607)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~-~---w~qi~iL~lL~~~~~~~~~~~~--~il~~l~~~L~~~n~aVv~~ai~ 283 (607)
...+.....+..|++.+...+ + |.-..+|.-|.. .+....... ..++.+..++++.+..+...|+.
T Consensus 175 -------~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 175 -------KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp -------HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred -------HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 011111223555555554443 3 334444444442 222111111 24667777888888999999999
Q ss_pred HHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc----cccc-cceee--ec-cCCCHhHH
Q 007343 284 VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI----FASD-YKHFY--CQ-YNEPSYVK 355 (607)
Q Consensus 284 ~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~----~~~~-~~~f~--~~-~~d~~~Ik 355 (607)
++..+....+.. .....+.+.|+.++.+++++++..+...+..+....+.. +... +..+. +. .++...++
T Consensus 247 ~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 247 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 988876432221 112245667888998899999999999998887654321 1111 11111 11 23335699
Q ss_pred HHHHHHHHHccCCCC----HH------HHHHHHHHHhhcCC-HHHHHHHHHHHHHHHcccCCh-----HHHHHHHHHhhh
Q 007343 356 KLKLEMLTAVANESN----TY------EIVTELCEYAANVD-IPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLE 419 (607)
Q Consensus 356 ~~kL~iL~~l~n~~N----~~------~Iv~eL~~y~~~~d-~~~~~~~i~~I~~la~k~~~~-----~~~v~~ll~ll~ 419 (607)
..++..|..|+.... .+ ..+.-|...+.+.+ ..+++.++.+++.++..-... ...+..|++++.
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 999999999986421 11 24566777777664 689999999999998643221 236777888877
Q ss_pred hcCc----------------------hhhHHHHHHHHHHHHhCCCCch-----hHHHHHHhhhhccCCchHHHHHHHHHH
Q 007343 420 MEKD----------------------YVTAEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWML 472 (607)
Q Consensus 420 ~~~~----------------------~v~~e~i~~i~~i~~~~p~~~~-----~~~~~l~~l~~~~~~~~~~~~~~iwil 472 (607)
.+.. .+...+...+..+.+ .++.+. .++..+.+++. -.+++++..++|.+
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL 481 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 6321 222233334444432 121111 12233444432 24577888889998
Q ss_pred hcccCCCCChHH-----HHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCc
Q 007343 473 GEYSQDMQDAPY-----ILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP 518 (607)
Q Consensus 473 GEy~~~i~~~~~-----~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~ 518 (607)
+..+..-+.... .++.+.+-...++ ++||.....++.++....+.
T Consensus 482 ~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~-~~vr~~A~~aL~~l~~~~~~ 531 (644)
T 2z6h_A 482 CELAQDKEAAEAIEAEGATAPLTELLHSRN-EGVATYAAAVLFRMSEDKPQ 531 (644)
T ss_dssp HHHHTSHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTTSCH
T ss_pred HHHHcCHHHHHHHHHcCChhHHHHHHcCCC-HHHHHHHHHHHHHHhccCcH
Confidence 887653111111 1233444444455 88888888888888665543
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.14 E-value=2.4e-09 Score=107.87 Aligned_cols=222 Identities=13% Similarity=0.058 Sum_probs=164.5
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCh-HhhHHHHHHHHh-h
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV-ANLVEYLVGPLG-L 142 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~-~e~~~~l~~~i~-~ 142 (607)
....++.+.+++...|.-+--.+.... .+ -+++.+.+-+.|+++.+|..|+.+++.++. ++..+.+.+.+. .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~--~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG--GQ----DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC--CH----HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC--Cc----hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 456677888888888888777777765 22 357788888999999999999999999983 455566666665 3
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcc
Q 007343 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (607)
Q Consensus 143 ~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~ 222 (607)
+++|+++.||..|+.++.++...+|... +..++.|..+ ++|+|+.|+.+|+.+|..+...
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~~~~~~~--~~~~~~L~~~-l~d~~~~vR~~a~~aL~~~~~~----------------- 158 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCKKNPIYS--PKIVEQSQIT-AFDKSTNVRRATAFAISVINDK----------------- 158 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHH-TTCSCHHHHHHHHHHHHTC--------------------
T ss_pred HhcCCCHHHHHHHHHHHHHHhccCCccc--HHHHHHHHHH-hhCCCHHHHHHHHHHHHhcCCH-----------------
Confidence 6789999999999999999986655432 3567888887 4999999999999999876431
Q ss_pred hHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHH
Q 007343 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYER 302 (607)
Q Consensus 223 ~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~ 302 (607)
..+..|+..+.+.+++.+...+..|..+...++ ..++.+...+++.++.|..+|+..+..++.. .
T Consensus 159 -~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~--~-------- 223 (280)
T 1oyz_A 159 -ATIPLLINLLKDPNGDVRNWAAFAININKYDNS----DIRDCFVEMLQDKNEEVRIEAIIGLSYRKDK--R-------- 223 (280)
T ss_dssp -CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH----HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCG--G--------
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCH--h--------
Confidence 124455566678899999999999988764443 4567788888889999999999999887632 1
Q ss_pred HHHHHHHHhccCCchhHHHHHHHHHHH
Q 007343 303 IKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (607)
Q Consensus 303 l~~~L~~ll~s~~~ni~y~~L~~i~~l 329 (607)
..+.|..++.+ +++|..+...+..+
T Consensus 224 ~~~~L~~~l~d--~~vr~~a~~aL~~i 248 (280)
T 1oyz_A 224 VLSVLCDELKK--NTVYDDIIEAAGEL 248 (280)
T ss_dssp GHHHHHHHHTS--SSCCHHHHHHHHHH
T ss_pred hHHHHHHHhcC--ccHHHHHHHHHHhc
Confidence 23445556653 44777776666544
No 38
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.10 E-value=1.2e-08 Score=112.84 Aligned_cols=296 Identities=13% Similarity=0.110 Sum_probs=199.3
Q ss_pred HHHHHhhhcC-CCChHHHHHHHHHHHHHHhhCCCC---cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccch
Q 007343 136 LVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (607)
Q Consensus 136 l~~~i~~~L~-d~~~~VRK~A~lal~kl~~~~p~~---~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~ 211 (607)
++|.+.++|. +.+|.++..|+.|+..+...+++. +.+.+.++.|..+ +.++++.|.-.|+.+|..|+..++.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~L-L~s~~~~v~e~A~~aL~nLa~~~~~--- 195 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL-LASPHAHISEQAVWALGNIAGAGSA--- 195 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhccCHH---
Confidence 5666777775 567999999999999997655442 3346889999998 5999999999999999999876542
Q ss_pred hhhhhHhhhcchHHHHHHHhhcCCCC-----hhHHHHHHHHHhccCCC-----ChhHHHHHHHHHHHHhccCchHHHHHH
Q 007343 212 EASREREALISKPVIYYLLNRIKEFS-----EWAQCLVLELVAKYVPL-----DSNEIFDIMNLLEDRLQHANGAVVLST 281 (607)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~~~~-----~w~qi~iL~lL~~~~~~-----~~~~~~~il~~l~~~L~~~n~aVv~~a 281 (607)
+.+ .++....+..|+..+...+ ...+..+...|..++.. .......+++.+..++++.++.|...|
T Consensus 196 --~r~--~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a 271 (529)
T 3tpo_A 196 --FRD--LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 271 (529)
T ss_dssp --HHH--HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred --HHH--HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHH
Confidence 111 1111223555666664332 23344444444443221 123345678889999999999999999
Q ss_pred HHHHHhhcCCcchhHHHHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc----cccc-cceee-eccCCCHhH
Q 007343 282 IKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI----FASD-YKHFY-CQYNEPSYV 354 (607)
Q Consensus 282 i~~i~~l~~~~~~~~~~~~-~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~----~~~~-~~~f~-~~~~d~~~I 354 (607)
+.++.++.....+....+. ..+.+.|+.++.++++.++.-+++.+..++...+.. +... +..+. +..+....|
T Consensus 272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i 351 (529)
T 3tpo_A 272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 351 (529)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence 9999888765443322222 235567888999999999999999998887654321 1111 11121 223445679
Q ss_pred HHHHHHHHHHccCC--CCHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC--h-----HHHHHHHHHhhhh
Q 007343 355 KKLKLEMLTAVANE--SNTYE-----IVTELCEYAANVDIPIARESIRAVGKIALQQYD--V-----NAIVDRLLQFLEM 420 (607)
Q Consensus 355 k~~kL~iL~~l~n~--~N~~~-----Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~--~-----~~~v~~ll~ll~~ 420 (607)
|..+.-.|..++.. .+... ++.-|...+.+.+.+++++++.+|+.++..... . ..++..|+++|..
T Consensus 352 ~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 352 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 99999999988743 22222 455677888888999999999999998864321 1 1367888999988
Q ss_pred cCchhhHHHHHHHHHHHHh
Q 007343 421 EKDYVTAEALVLVKDLLRK 439 (607)
Q Consensus 421 ~~~~v~~e~i~~i~~i~~~ 439 (607)
....+..-++..+.+|++.
T Consensus 432 ~d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQA 450 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7767777667777777653
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.07 E-value=4.7e-08 Score=107.47 Aligned_cols=329 Identities=10% Similarity=0.018 Sum_probs=225.3
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhc--cCCChH--HHH--HHHHHHHHcC-CCCHHHHHHHHHHhhcC--ChHhhHHH
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYA--KVNPDL--ALL--TINFLQRDCK-DEDPMIRGLALRSLCSL--RVANLVEY 135 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~--~~~~el--~~L--~iNtl~kDl~-~~n~~ir~lALr~l~~i--~~~e~~~~ 135 (607)
..++|+.+.|+|.+.+.-+--.+..++ +.+|-+ ++- ++..|.+-|. +.+|.++..|..+|++| ++++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 789999999999988777666665443 345532 222 4788888886 55789999999999987 34444333
Q ss_pred -----HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcCCCCh-----hHHHHHHHHHHHH
Q 007343 136 -----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDP-----QVVANCLSALQEI 202 (607)
Q Consensus 136 -----l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~D~d~-----~V~~~a~~~L~ei 202 (607)
.+|.+.++|.++++.||..|+.|+..+...+|+ .+.+.+.++.|..+| .+.+. .++.++..++..+
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL-~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL-AVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT-CSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHH-HhccchhhhHHHHHHHHHHHHHH
Confidence 467888999999999999999999999765543 333467888888885 65543 3566777788777
Q ss_pred HhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHH-----HHHHHHHHhccCchHH
Q 007343 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAV 277 (607)
Q Consensus 203 ~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~-----il~~l~~~L~~~n~aV 277 (607)
+....... .. . ....++..|.+.+...++..+......|..+...+++.... +++.+..+|++.+..|
T Consensus 218 ~~~~~~~~-----~~-~-~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 290 (510)
T 3ul1_B 218 CRNKNPAP-----PL-D-AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 290 (510)
T ss_dssp HCCCSSCC-----CH-H-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred hhcccchh-----HH-H-HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhh
Confidence 75432110 00 0 01234566677777889999999999998877655443322 4667888999999999
Q ss_pred HHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc----ccccc-ce-eeeccCC
Q 007343 278 VLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI----FASDY-KH-FYCQYNE 350 (607)
Q Consensus 278 v~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~----~~~~~-~~-f~~~~~d 350 (607)
...|++++..+....+.....+++ .+.++|..+++++++++|..+...+..++...+.. +.... .. +-+..+.
T Consensus 291 ~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~ 370 (510)
T 3ul1_B 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred hhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC
Confidence 999999999887554443333332 23455778888899999999999998887655431 11111 11 1123445
Q ss_pred CHhHHHHHHHHHHHccCCCCHHH--------HHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 007343 351 PSYVKKLKLEMLTAVANESNTYE--------IVTELCEYAANVDIPIARESIRAVGKIA 401 (607)
Q Consensus 351 ~~~Ik~~kL~iL~~l~n~~N~~~--------Iv~eL~~y~~~~d~~~~~~~i~~I~~la 401 (607)
+..+|..+.-.|..++...+.+. +++-|...+.+.|.+++..++.+|..+.
T Consensus 371 ~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 56699999999988875444332 2455777888889888887777776654
No 40
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.07 E-value=6.9e-09 Score=99.03 Aligned_cols=184 Identities=17% Similarity=0.166 Sum_probs=146.7
Q ss_pred hhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhh
Q 007343 63 AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGL 142 (607)
Q Consensus 63 ~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~ 142 (607)
..++.+++++.++|...|..+--.+..+.. + -++..+.+-+.|+|+.+|..|+++++.++.++.++. +.+
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~----~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~----L~~ 83 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD--E----RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LIK 83 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHH----HHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC--h----hHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HHH
Confidence 357788999999999999988888887753 2 246777788889999999999999999998876554 456
Q ss_pred hcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcc
Q 007343 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (607)
Q Consensus 143 ~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~ 222 (607)
.+.|+++.||..|+.++.++.. ++.++.|.++ +.|+|+.|+.+|+.+|..+...
T Consensus 84 ~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~~~~----------------- 137 (201)
T 3ltj_A 84 ALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKA-LKDEDWFVRIAAAFALGEIGDE----------------- 137 (201)
T ss_dssp HTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHTCG-----------------
T ss_pred HHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCCH-----------------
Confidence 7889999999999999998741 3467888888 4999999999999999887421
Q ss_pred hHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhc
Q 007343 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (607)
Q Consensus 223 ~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~ 289 (607)
..+..|...+.+.+++.+...++.|..+.. + ..++.+...+++.++.|...|+..+-.+.
T Consensus 138 -~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~----~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 -RAVEPLIKALKDEDGWVRQSAADALGEIGG--E----RVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H----HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h----hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 134556667778899999999999998843 1 35677777788888889888888776654
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.06 E-value=6.5e-09 Score=100.03 Aligned_cols=185 Identities=17% Similarity=0.149 Sum_probs=147.9
Q ss_pred hhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhh
Q 007343 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (607)
Q Consensus 64 lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~ 143 (607)
.++.+++.+.+++...|..+--.+..+.. + -++..+.+-+.|+++.+|..|+++|+.++.++..+. +.+.
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~----~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~----L~~~ 89 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--E----RAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEP----LIKA 89 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----GGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHH----HHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--c----cHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHH----HHHH
Confidence 46777888999999999888888887753 2 256777888889999999999999999998876654 5567
Q ss_pred cCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcch
Q 007343 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (607)
Q Consensus 144 L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~ 223 (607)
+.|+++.||..|+.++.++.. ++.++.|.++ +.|+|+.|+..|+.+|..+...
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~~~~------------------ 142 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKA-LKDEDWFVRIAAAFALGEIGDE------------------ 142 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHCCG------------------
T ss_pred HcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCH------------------
Confidence 899999999999999998842 3467888898 4999999999999999987421
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCC
Q 007343 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (607)
Q Consensus 224 ~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~ 291 (607)
..+..|...+.+.+++.+...++.|..+.. ...++.+...+++.++.|..+|+..+..+..+
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 124556666788999999999999998853 24667788888889999999999998877654
No 42
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.04 E-value=9e-07 Score=97.63 Aligned_cols=337 Identities=14% Similarity=0.098 Sum_probs=227.9
Q ss_pred cHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCC--c-----chhhhhhhhhcc-CCCchhHHHHHHHHHhhcc
Q 007343 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID--V-----SAVFGEMVMCSA-TSDIVLKKMCYLYVGNYAK 92 (607)
Q Consensus 21 e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d--~-----s~lf~~vi~l~~-s~~~~~Krl~YL~l~~~~~ 92 (607)
.+.++-+.+.+ ++.+.+.++++.+--+.....+ + +.+.|..++++. +++..++.-+--++.+++.
T Consensus 77 ~l~~lv~~l~s-------~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~ 149 (529)
T 3tpo_A 77 SVEDIVKGINS-------NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 149 (529)
T ss_dssp CHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-------CCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHc
Confidence 46677776665 4556777777766555554433 1 123556677775 5557778777778888887
Q ss_pred CCChHHHH-----HHHHHHHHcCCCCHHHHHHHHHHhhcCC--hHhhHHHH-----HHHHhhhcCCCC-----hHHHHHH
Q 007343 93 VNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVEYL-----VGPLGLGLKDNN-----SYVRTVA 155 (607)
Q Consensus 93 ~~~el~~L-----~iNtl~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l-----~~~i~~~L~d~~-----~~VRK~A 155 (607)
.+++.... ++..|.+-+.++++.++..|+.+|++|. .++.-..+ ++++..++.+++ ..+.+.|
T Consensus 150 ~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a 229 (529)
T 3tpo_A 150 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 229 (529)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHH
Confidence 77664322 5788999999999999999999999984 34443333 466777777654 3567888
Q ss_pred HHHHHHHHhhCCCCc---CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhh
Q 007343 156 VIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR 232 (607)
Q Consensus 156 ~lal~kl~~~~p~~~---~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~ 232 (607)
+.++..+.+...... ...+.++.|..+ +.++++.|+..|+.+|..+.....+. ....+....+..|+..
T Consensus 230 ~~~L~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~v~~~g~i~~Lv~l 301 (529)
T 3tpo_A 230 TWTLSNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNER-------IEMVVKKGVVPQLVKL 301 (529)
T ss_dssp HHHHHHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHHH-------HHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhhhh-------HHHHHhccchHHHHHH
Confidence 888888876432221 113456778887 48999999999999999988643221 0111222345667777
Q ss_pred cCCCChhHHHHHHHHHhccCCCChhHHHHH-----HHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHH
Q 007343 233 IKEFSEWAQCLVLELVAKYVPLDSNEIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAP 306 (607)
Q Consensus 233 l~~~~~w~qi~iL~lL~~~~~~~~~~~~~i-----l~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~ 306 (607)
+...++..+...++.|......++.....+ +..+..+|++.++.|..+|+.++..+....++....+.+ .+.++
T Consensus 302 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~ 381 (529)
T 3tpo_A 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF 381 (529)
T ss_dssp HTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHH
T ss_pred hcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHH
Confidence 778899999999999998876666554443 456778899999999999999999987655543333333 35677
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCC
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVD 386 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d 386 (607)
|+.++.++++.++..+...+..++... ++..++. |++. .++.-|...+.+.|
T Consensus 382 Lv~lL~~~~~~v~~~A~~aL~nl~~~~----------------~~~~~~~--------l~~~----g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 382 LVGVLSKADFKTQKAAAWAITNYTSGG----------------TVEQIVY--------LVHC----GIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHS----------------CHHHHHH--------HHHT----TCHHHHHHGGGCSC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCC----------------CHHHHHH--------HHHC----cCHHHHHHHhcCCC
Confidence 888898899999998888887776542 1111111 1111 13344455667778
Q ss_pred HHHHHHHHHHHHHH
Q 007343 387 IPIARESIRAVGKI 400 (607)
Q Consensus 387 ~~~~~~~i~~I~~l 400 (607)
.+++..+..+|..+
T Consensus 434 ~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 434 TKIIQVILDAISNI 447 (529)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88777666666554
No 43
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.02 E-value=1.1e-08 Score=117.08 Aligned_cols=398 Identities=15% Similarity=0.124 Sum_probs=269.0
Q ss_pred CChHHHHHHHHHHHHHHhcCC-Ccc-------hhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHH----HHHHHH
Q 007343 39 GIDDSKRELFKKVISYMTIGI-DVS-------AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL----TINFLQ 106 (607)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~G~-d~s-------~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L----~iNtl~ 106 (607)
.+.+++..+.+ .+.....|- |+. ...+.++.+++|++...++-++-++...+. +++..-. -+..|.
T Consensus 259 ~~~~~~~~a~~-alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~-~~~~R~~I~~~gv~~L~ 336 (810)
T 3now_A 259 PDMESKVRVTV-AITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASS-KKDKAKALCEQGVDILK 336 (810)
T ss_dssp CCHHHHHHHHH-HHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTT-SHHHHHTTHHHHHHHHH
T ss_pred CChHhHHHHHH-HHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CcHHHHHHHHcCcHHHH
Confidence 44567777764 445555664 321 234456789999999999999998888654 3553222 246777
Q ss_pred HHcCCCCHHHHHHHHHHhhcCCh--------Hhh----HHHHHHHHhhhcCCC--ChHHHHHHHHHHHHHHhhCC---CC
Q 007343 107 RDCKDEDPMIRGLALRSLCSLRV--------ANL----VEYLVGPLGLGLKDN--NSYVRTVAVIGVLKLYHISA---PT 169 (607)
Q Consensus 107 kDl~~~n~~ir~lALr~l~~i~~--------~e~----~~~l~~~i~~~L~d~--~~~VRK~A~lal~kl~~~~p---~~ 169 (607)
+=+.+.++.+|..|+-+||++.. +.+ ++.+.+.+.++|.++ ++.||+.|+-|+..+-...+ +.
T Consensus 337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~l 416 (810)
T 3now_A 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKL 416 (810)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 77788999999999999999852 112 567788888988888 89999999999998854222 23
Q ss_pred cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc--------------------ch----hhhhhH-hhhcchH
Q 007343 170 CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST--------------------SE----EASRER-EALISKP 224 (607)
Q Consensus 170 ~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~--------------------~~----~~~~~~-~~li~~~ 224 (607)
+.+.++++.|.++| +.+|+.+...|+.+|..|....... .+ +....+ ..++...
T Consensus 417 v~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 417 IEDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HHCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 33467899999985 7789999999999999998743100 00 000000 1112222
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHH-----HHHHHHHHhccCchHHHHHHHHHHHhhcCC-cchh---
Q 007343 225 VIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLS-MTDV--- 295 (607)
Q Consensus 225 ~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~-----il~~l~~~L~~~n~aVv~~ai~~i~~l~~~-~~~~--- 295 (607)
.+..|+..+...+|=.|....+.|..... +++.... .++.|..+|++.++.+...|+.++..+..+ .+..
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 45556666677889999999999988863 3333322 466777888888888899999998876542 2221
Q ss_pred HHHHHHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHhhCCcc----cccc-ccee-eeccCCCHhHHHHHHHHHHHccCC
Q 007343 296 HQQVYERIKAPLLTLVSSGSP-EQSYAVLSHLHILVMRAPFI----FASD-YKHF-YCQYNEPSYVKKLKLEMLTAVANE 368 (607)
Q Consensus 296 ~~~~~~~l~~~L~~ll~s~~~-ni~y~~L~~i~~l~~~~p~~----~~~~-~~~f-~~~~~d~~~Ik~~kL~iL~~l~n~ 368 (607)
.+...+ +.+||+.||.++.. ..++-++..+..++...++. +... +..+ .+..++...|+..+.++|..|+..
T Consensus 575 ~~~~~~-aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 575 GQRSLD-VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp THHHHH-THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred chhhhc-HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 112223 56889999975423 44678888888887654321 1111 1111 122344456999999999998864
Q ss_pred CC-HH------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC-h------HHHHHHHHHhhhhcCchhhHHHHHHHH
Q 007343 369 SN-TY------EIVTELCEYAANVDIPIARESIRAVGKIALQQYD-V------NAIVDRLLQFLEMEKDYVTAEALVLVK 434 (607)
Q Consensus 369 ~N-~~------~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~-~------~~~v~~ll~ll~~~~~~v~~e~i~~i~ 434 (607)
.. .. ..++-|..++.+.|.+.++++..+++.++...+. . ...+..|++++..+...+..+....+.
T Consensus 654 ~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~ 733 (810)
T 3now_A 654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733 (810)
T ss_dssp HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 32 22 2345566788888999999999999999874432 1 246789999999888888888888888
Q ss_pred HHHHhCC
Q 007343 435 DLLRKYP 441 (607)
Q Consensus 435 ~i~~~~p 441 (607)
++....+
T Consensus 734 NL~~~s~ 740 (810)
T 3now_A 734 NMINAGE 740 (810)
T ss_dssp HHHTTCH
T ss_pred HHHhCCH
Confidence 8887444
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.01 E-value=5.6e-08 Score=104.16 Aligned_cols=378 Identities=11% Similarity=0.044 Sum_probs=218.4
Q ss_pred hhhccCCCchhHHHHHHHHHhhccC-CChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC------------------Ch
Q 007343 69 VMCSATSDIVLKKMCYLYVGNYAKV-NPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------------RV 129 (607)
Q Consensus 69 i~l~~s~~~~~Krl~YL~l~~~~~~-~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i------------------~~ 129 (607)
+..+.++|-..|+-+--++..+... .|+........+.. .+.++.+|.+|...+.+. -.
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~ 84 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAID 84 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCC
Confidence 3334455555555555555554332 23322222222221 223455555555444433 13
Q ss_pred HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC-CC-CcCCCCchHHHHHhhcCCC--ChhHHHHHHHHHHHHHhh
Q 007343 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-AP-TCIDADFPPTLKHLMLNDP--DPQVVANCLSALQEIWSL 205 (607)
Q Consensus 130 ~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~-p~-~~~~~~~~~~L~~lLl~D~--d~~V~~~a~~~L~ei~~~ 205 (607)
++..+.+...+...+.++++.| ++++.++..+.+.+ |+ .. +++++.|...+ .++ |+.++..|+.+|..+.+.
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w--~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 85 ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW--PELIPQLVANV-TNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC--TTHHHHHHHHH-HCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc--HHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHHHh
Confidence 3455566667778889999999 99999999998864 53 22 57888888875 677 999999999999999875
Q ss_pred c-cccchhhhhhHhhhcchHHHHHHHhhcCCC--ChhHHHHHHHHHhccCCCCh-----h-HHHHHHHHHHHHhccCchH
Q 007343 206 E-ASTSEEASREREALISKPVIYYLLNRIKEF--SEWAQCLVLELVAKYVPLDS-----N-EIFDIMNLLEDRLQHANGA 276 (607)
Q Consensus 206 ~-~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~--~~w~qi~iL~lL~~~~~~~~-----~-~~~~il~~l~~~L~~~n~a 276 (607)
. +... .-....++..++..+.+. ++=.+...++.+..+...-. . ....+++.+...+.+.+..
T Consensus 161 ~~~~~~--------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 161 IDPEQL--------QDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp SCGGGT--------GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred CCchhh--------HhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 3 2110 001123455566666665 56677778888776432111 1 1123567777777778888
Q ss_pred HHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc--cccccceeeeccCCC--
Q 007343 277 VVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI--FASDYKHFYCQYNEP-- 351 (607)
Q Consensus 277 Vv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~--~~~~~~~f~~~~~d~-- 351 (607)
|...+++++..+....+..-...+. .+.+.+...+.+.+++++..+++.+..++...... +.... .....+
T Consensus 233 vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~ 308 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA----AEQGRPPE 308 (462)
T ss_dssp HHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCT----TCSSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccc----cccCCCcc
Confidence 8888888877665322211001112 33444555667788999999999888777542110 00000 000000
Q ss_pred ----HhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhc-------CCHHHHHHHHHHHHHHHcccCCh--HHHHHHHHHhh
Q 007343 352 ----SYVKKLKLEMLTAVANESNTYEIVTELCEYAAN-------VDIPIARESIRAVGKIALQQYDV--NAIVDRLLQFL 418 (607)
Q Consensus 352 ----~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~-------~d~~~~~~~i~~I~~la~k~~~~--~~~v~~ll~ll 418 (607)
.+++. .+..++.-|...+.+ .+...++.+..+++.++..+++. ...+..+.+.+
T Consensus 309 ~~~~~~~~~-------------~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l 375 (462)
T 1ibr_B 309 HTSKFYAKG-------------ALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375 (462)
T ss_dssp CCCCCHHHH-------------HHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHT
T ss_pred chhHHHHHH-------------HhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 01110 124455555555432 22367778888888888877641 33555666666
Q ss_pred hhcCchhhHHHHHHHHHHHHhCC-C----CchhHHHHHHhhhhccCCchHHHHHHHHHHhcccCCC
Q 007343 419 EMEKDYVTAEALVLVKDLLRKYP-Q----WSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM 479 (607)
Q Consensus 419 ~~~~~~v~~e~i~~i~~i~~~~p-~----~~~~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~i 479 (607)
......+...++..+..+..... + ....++..+...+.+ .++.++.+++|.+|.+++..
T Consensus 376 ~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d--~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD--PSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHG
T ss_pred cCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhc
Confidence 65555666666777777765432 1 113455555555433 46899999999999998654
No 45
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.92 E-value=1.3e-08 Score=100.43 Aligned_cols=219 Identities=16% Similarity=0.102 Sum_probs=165.6
Q ss_pred hhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHH--H---HHHHHHHHHcCCCCHHHHHHHHHHhhcCCh--HhhHHH
Q 007343 63 AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA--L---LTINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVEY 135 (607)
Q Consensus 63 ~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~--~---L~iNtl~kDl~~~n~~ir~lALr~l~~i~~--~e~~~~ 135 (607)
+.|+.+++.+.++|...+.-+--.+..++..+++.. + =++..+.+-+.++++.+|..|+.+++++.. ++..+.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 358889999999999988888777755544333221 1 156888999999999999999999999864 443333
Q ss_pred -----HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC---cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 136 -----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 136 -----l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~---~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
.++.+.+++.++++.||+.|+.++..+....+.. +.+.+.++.|.++| .++++.|+..|+.+|..+...++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCCh
Confidence 5678889999999999999999999997654432 33457889999985 88999999999999999986543
Q ss_pred ccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHH-----HHHHHHHHhccCchHHHHHHH
Q 007343 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTI 282 (607)
Q Consensus 208 ~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~-----il~~l~~~L~~~n~aVv~~ai 282 (607)
.. ...++....+..|++.+...++..+...+..|..+...+++.... .++.+..++++.++.|..+|+
T Consensus 171 ~~-------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 171 EQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HH-------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HH-------HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 21 111222235677888888889999999999999988666654433 456677788888888988888
Q ss_pred HHHHhhc
Q 007343 283 KVFLHLT 289 (607)
Q Consensus 283 ~~i~~l~ 289 (607)
.++..+.
T Consensus 244 ~~L~~l~ 250 (252)
T 4db8_A 244 EALEKLQ 250 (252)
T ss_dssp HHHHTTC
T ss_pred HHHHHHh
Confidence 8887654
No 46
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.89 E-value=7.7e-08 Score=94.24 Aligned_cols=218 Identities=15% Similarity=0.089 Sum_probs=167.6
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHH-----HHHHHHHHcCCCCHHHHHHHHHHhhcCCh--HhhHH---
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE--- 134 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L-----~iNtl~kDl~~~n~~ir~lALr~l~~i~~--~e~~~--- 134 (607)
.+.+++++.+++...+.-+--.+..+...+++..-. ++..+.+-+.++++.+|..|+.+++++.. ++..+
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 456678888888888888888888888776643222 57888999999999999999999999864 33333
Q ss_pred --HHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC---cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc
Q 007343 135 --YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (607)
Q Consensus 135 --~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~---~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~ 209 (607)
..++.+.+++.++++.||..|+.++..+...+|+. +.+.+.++.|.++| .++++.|+..|+.+|..+....++.
T Consensus 84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~ 162 (252)
T 4hxt_A 84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEA 162 (252)
T ss_dssp HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 25677888999999999999999999998655442 12347889999984 8999999999999999998654321
Q ss_pred chhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHH-----HHHHHHHHhccCchHHHHHHHHH
Q 007343 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKV 284 (607)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~-----il~~l~~~L~~~n~aVv~~ai~~ 284 (607)
...++....+..|++.+...++..+...+..|..++..+++.... .++.+..++++.++.|...|+.+
T Consensus 163 -------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 163 -------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp -------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred -------HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 112222346778888888889999999999999988765554333 46777888888888898888888
Q ss_pred HHhhcC
Q 007343 285 FLHLTL 290 (607)
Q Consensus 285 i~~l~~ 290 (607)
+..+..
T Consensus 236 L~~l~~ 241 (252)
T 4hxt_A 236 LENIKS 241 (252)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 877654
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.85 E-value=3.4e-08 Score=97.37 Aligned_cols=220 Identities=17% Similarity=0.128 Sum_probs=161.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHhhcCCh--HhhHH-----HHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC---cC
Q 007343 102 INFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE-----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CI 171 (607)
Q Consensus 102 iNtl~kDl~~~n~~ir~lALr~l~~i~~--~e~~~-----~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~---~~ 171 (607)
.+.+.+.+.|+|+.+|..|+.+++++-. ++..+ ..++.+.+++.++++.||..|+.++..+...+++. +.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5788899999999999999998866432 22222 35577889999999999999999999997644432 22
Q ss_pred CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 007343 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (607)
Q Consensus 172 ~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~ 251 (607)
+.+.++.|..+| .++|+.|+.+|+.+|..+....+.. ...+.....+..|++.+.+.++-.+...+..|..+
T Consensus 94 ~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 94 DAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHH-------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 356889999985 8899999999999999997653310 01122233577788888888889999999999998
Q ss_pred CCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHH
Q 007343 252 VPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSH 325 (607)
Q Consensus 252 ~~~~~~~~~-----~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~ 325 (607)
...+++... ..++.+..++++.++.|...|+.++..+....+.....+.+ .+.+.|..++.++++++|..+...
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 876654433 24677888899999999999999999887544443333333 245667777877888888888777
Q ss_pred HHHH
Q 007343 326 LHIL 329 (607)
Q Consensus 326 i~~l 329 (607)
+..+
T Consensus 246 L~~l 249 (252)
T 4db8_A 246 LEKL 249 (252)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 6654
No 48
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.71 E-value=1.8e-07 Score=89.44 Aligned_cols=186 Identities=17% Similarity=0.090 Sum_probs=133.4
Q ss_pred CCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHH-----HHHHHHHHcCCCCHHHHHHHHHHhhcCC--hH
Q 007343 58 GIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLR--VA 130 (607)
Q Consensus 58 G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L-----~iNtl~kDl~~~n~~ir~lALr~l~~i~--~~ 130 (607)
|++....++-+++++.++|...+.-+..++..+...+++.... ++..+.+-+.++++.+|..|+.+++++. .+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 4444455677788999999999999999999998766665322 5788899999999999999999999985 34
Q ss_pred hhHHH-----HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC---cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHH
Q 007343 131 NLVEY-----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (607)
Q Consensus 131 e~~~~-----l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~---~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei 202 (607)
+..+. .++.+.+++.++++.||+.|+.++..+...+++. +.+.+.++.|.++| .++|+.|+..|+.+|..+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHH
Confidence 44333 4578889999999999999999999998655443 22367899999985 888999999999999999
Q ss_pred HhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhcc
Q 007343 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (607)
Q Consensus 203 ~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~ 251 (607)
+..++.. ...+.....+..|++.+...++-.+...+..|..+
T Consensus 166 ~~~~~~~-------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 166 ASGGNEQ-------KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HTSCHHH-------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCcHH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 8653321 11111122345555555555666666666555543
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.61 E-value=6.1e-07 Score=85.72 Aligned_cols=189 Identities=17% Similarity=0.116 Sum_probs=139.8
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC---cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccc
Q 007343 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (607)
Q Consensus 134 ~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~---~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~ 210 (607)
+...+.+.+++.++++.||..|+.++..+...+++. +.+.+.++.|.++| .++|+.|+..|+.+|..+...++..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~- 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ- 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHH-
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHH-
Confidence 345567788899999999999999999998655432 22357888999984 8889999999999999997544321
Q ss_pred hhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHH-----HHHHHHHHHhccCchHHHHHHHHHH
Q 007343 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVF 285 (607)
Q Consensus 211 ~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~L~~~n~aVv~~ai~~i 285 (607)
...++....+..|++.+.+.++-.+...+..|..+...+++... ..++.+..++++.++.|...|+.++
T Consensus 89 ------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 89 ------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp ------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ------HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11122223467788888888999999999999998866655432 2567788889999999999999999
Q ss_pred HhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHH
Q 007343 286 LHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (607)
Q Consensus 286 ~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~ 330 (607)
..+....+..+..+.+ ...+.|..++.+++++++..++..+..+.
T Consensus 163 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 163 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 9887654443333332 34566788888888999999988887664
No 50
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.54 E-value=5e-06 Score=79.66 Aligned_cols=190 Identities=15% Similarity=0.117 Sum_probs=136.4
Q ss_pred CchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhcc--
Q 007343 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY-- 251 (607)
Q Consensus 174 ~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~-- 251 (607)
+....|..+ +.|.|+.|+.+|+.++.++.+.-|+.- . . ......+..+++.+.+.++-..++.+++|...
T Consensus 33 ~~l~~L~~L-L~dkD~~vk~raL~~LeellK~~~~~l---~--~--~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe 104 (265)
T 3b2a_A 33 RALFLILEL-AGEDDETTRLRAFVALGEILKRADSDL---R--M--MVLERHLDVFINALSQENEKVTIKALRALGYLVK 104 (265)
T ss_dssp HHHHHHHHH-TTSSCHHHHHHHHHHHHHHHHHSCHHH---H--H--HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHH-HhccchHHHHHHHHHHHHHHHhccccc---c--H--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 456778888 599999999999999999998644310 0 0 11123566677777889999998888888875
Q ss_pred -CCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Q 007343 252 -VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (607)
Q Consensus 252 -~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~ 330 (607)
.|-+++....+.+++...+.+.|.....+|+...-.+.+... ..++.+.+.+++.|+++.+|-.||+.+..+.
T Consensus 105 ~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 105 DVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp TCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 466778888899999999999999999999999888754322 2356677888999999999999999999998
Q ss_pred hhC--Cccccccccee-eeccCCCHhHHHHHHHHHHHccCCCCHHHHHHH
Q 007343 331 MRA--PFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTE 377 (607)
Q Consensus 331 ~~~--p~~~~~~~~~f-~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~e 377 (607)
.+. |+++..=.+.. +...+++.+++.++|++|-.+.+..=.+.++++
T Consensus 179 ~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~ 228 (265)
T 3b2a_A 179 NSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIE 228 (265)
T ss_dssp GGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHH
T ss_pred cccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHH
Confidence 764 33433322211 122334566777777777777665433333333
No 51
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.53 E-value=2.7e-06 Score=88.42 Aligned_cols=254 Identities=11% Similarity=0.145 Sum_probs=100.5
Q ss_pred HHHcCCCCHHHHHH---HHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHh
Q 007343 106 QRDCKDEDPMIRGL---ALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (607)
Q Consensus 106 ~kDl~~~n~~ir~l---ALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~l 182 (607)
.|-++++|...|-+ ++..++.. .++++ .+...+++=++|++|++|-.|+-++.++- .|+.+ +.+.+.++++
T Consensus 74 ~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~--~~~m~--~~l~~~lk~~ 147 (355)
T 3tjz_B 74 TKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQIT--DSTML--QAIERYMKQA 147 (355)
T ss_dssp HGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHC--CTTTH--HHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCC--CHHHH--HHHHHHHHHH
Confidence 34555555555543 23333333 12333 44455555555555555555555555552 44443 2344455555
Q ss_pred hcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHH
Q 007343 183 MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI 262 (607)
Q Consensus 183 Ll~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~i 262 (607)
| .|+||.|+.+|+.+...+ .+..|+....+
T Consensus 148 L-~d~~pyVRk~A~l~~~kL-------------------------------------------------~~~~pe~v~~~ 177 (355)
T 3tjz_B 148 I-VDKVPSVSSSALVSSLHL-------------------------------------------------LKCSFDVVKRW 177 (355)
T ss_dssp H-TCSSHHHHHHHHHHHHHH-------------------------------------------------TTTCHHHHHTT
T ss_pred c-CCCCHHHHHHHHHHHHHH-------------------------------------------------hccCHHHHHHH
Confidence 3 555555555555444443 34444444445
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccC---CchhHHHHHHHHHHHHhhC-Ccccc
Q 007343 263 MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSG---SPEQSYAVLSHLHILVMRA-PFIFA 338 (607)
Q Consensus 263 l~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~---~~ni~y~~L~~i~~l~~~~-p~~~~ 338 (607)
++.+...+...|+.|++.|+.++.++..... ..+.++.. -+... +|=.+-..++.+..+.... |..-.
T Consensus 178 ~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~----~a~~kLv~----~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~ 249 (355)
T 3tjz_B 178 VNEAQEAASSDNIMVQYHALGLLYHVRKNDR----LAVSKMIS----KFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDS 249 (355)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH----HHHHHHHH----HHHSSCCSCHHHHHHHHHHHTCC----------
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHhhch----HHHHHHHH----HHhcCCCcChHHHHHHHHHHHHhccccchhhHH
Confidence 5666666777777787777777776654321 11222222 12211 1222222222222222222 22111
Q ss_pred ccccee-eeccCCCHhHHHHHHHHHHHccCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh-HHHHHHH
Q 007343 339 SDYKHF-YCQYNEPSYVKKLKLEMLTAVANESN--TYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRL 414 (607)
Q Consensus 339 ~~~~~f-~~~~~d~~~Ik~~kL~iL~~l~n~~N--~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-~~~v~~l 414 (607)
..++.+ -+..+-...|-..+...+..+.+... ....+.-|.-++.+.|++++=-+++.|..++.++|.. ..|-..+
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~i 329 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDL 329 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSSSSSSHHHHHHCC------------------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHH
Confidence 112211 12333344566666666666544111 1112333445666667777667777777777777763 4565666
Q ss_pred HHhhhhcCc
Q 007343 415 LQFLEMEKD 423 (607)
Q Consensus 415 l~ll~~~~~ 423 (607)
.++++.++-
T Consensus 330 e~li~d~n~ 338 (355)
T 3tjz_B 330 ENLVTDANR 338 (355)
T ss_dssp ---------
T ss_pred HHHccCCcH
Confidence 666665543
No 52
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.52 E-value=1.2e-05 Score=87.09 Aligned_cols=332 Identities=12% Similarity=0.117 Sum_probs=188.1
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhh
Q 007343 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (607)
Q Consensus 137 ~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~ 213 (607)
+|.+.+.|.++++.+|..|+.++.++...+++ .+.+.+.++.|.++| +++++.+...|+.+|..+...+++.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~s~~~~~~~~A~~aL~nLa~~~~~~---- 78 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTN---- 78 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHH----
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHH----
Confidence 35566777788999999999999998765554 333468899999985 8889999999999999998653321
Q ss_pred hhhHhhhcchHHHHHHHhhcC-CCChhHHHHHHHHHhccCCC--Chh-HHHHHHHHHHHHhc--------c--------C
Q 007343 214 SREREALISKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVPL--DSN-EIFDIMNLLEDRLQ--------H--------A 273 (607)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~-~~~~w~qi~iL~lL~~~~~~--~~~-~~~~il~~l~~~L~--------~--------~ 273 (607)
+..++....+..|++.+. ..++-.+......|...... ... -....++.+..+|. + .
T Consensus 79 ---k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 79 ---KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp ---HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred ---HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 111111223566666666 56777887777777665433 211 11245666777772 2 2
Q ss_pred chHHHHHHHHHHHhhcCCcchhHHHHHH--HHHHHHHHHhcc------CCchhHHHHHHHHHHHHhh----CCc------
Q 007343 274 NGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS------GSPEQSYAVLSHLHILVMR----APF------ 335 (607)
Q Consensus 274 n~aVv~~ai~~i~~l~~~~~~~~~~~~~--~l~~~L~~ll~s------~~~ni~y~~L~~i~~l~~~----~p~------ 335 (607)
.+.|+..|+.++..+... ++.+..+.+ .+.++|+.++.+ .+..+.--++..+..+..+ -|.
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 467888999999988865 444444442 456778888864 2333332232222222100 000
Q ss_pred --------------ccc---------------------ccc-cee-----------eeccCCCHhHHHHHHHHHHHccCC
Q 007343 336 --------------IFA---------------------SDY-KHF-----------YCQYNEPSYVKKLKLEMLTAVANE 368 (607)
Q Consensus 336 --------------~~~---------------------~~~-~~f-----------~~~~~d~~~Ik~~kL~iL~~l~n~ 368 (607)
.|. ++- ..+ ....+....++..+.-.|..+|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 000 000 000 011122344666667777777643
Q ss_pred CC-H-----H------HHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh----HHHHHHHHHhhhhcCc------hhh
Q 007343 369 SN-T-----Y------EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV----NAIVDRLLQFLEMEKD------YVT 426 (607)
Q Consensus 369 ~N-~-----~------~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~----~~~v~~ll~ll~~~~~------~v~ 426 (607)
++ . + .++.-|.+.+.+.|.+++++++.+++.++..-... ...+..|+++|..+.. .+.
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 21 1 1 12344566667777777777777777777532111 2466777777776532 233
Q ss_pred HHHHHHHHHHHHhCCCCch-----hHHHHHHhhhhccCCchHHHHHHHHHHhcccCC
Q 007343 427 AEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQD 478 (607)
Q Consensus 427 ~e~i~~i~~i~~~~p~~~~-----~~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~ 478 (607)
..++..+.+++...++... ..+..+.++.... ..++++..+.|++..|..+
T Consensus 395 ~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcc
Confidence 3444556666665554321 1223333443211 2456777777777776643
No 53
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.45 E-value=0.00026 Score=81.64 Aligned_cols=342 Identities=11% Similarity=0.020 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHhcCCCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcC---CCCHHHHHHH
Q 007343 44 KRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK---DEDPMIRGLA 120 (607)
Q Consensus 44 k~~~l~kli~~~~~G~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~---~~n~~ir~lA 120 (607)
.-.+..-+=+.|..|.-.+.++-.-..-+..+.-.-|--.-..+..+...+.+- ....+.+-+- +.++++|+-|
T Consensus 339 ~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~---gl~~L~~yL~~~~s~~~~ik~GA 415 (963)
T 4ady_A 339 FHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLE---GKKVMAPYLPGSRASSRFIKGGS 415 (963)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTT---HHHHHTTTSTTSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHH---HHHHHHHhccccCCCcHHHHHHH
Confidence 334555556677788766665543333232222222322333333433334442 2445555554 7889999999
Q ss_pred HHHhhcCChH---hhHHHHHHHHhhhc-CCC---ChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHH
Q 007343 121 LRSLCSLRVA---NLVEYLVGPLGLGL-KDN---NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVA 193 (607)
Q Consensus 121 Lr~l~~i~~~---e~~~~l~~~i~~~L-~d~---~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~ 193 (607)
+-.+|-+... +..+.+.+.+...- ... ++.||..|++++.-+|--.. +++..+.|...| .|.+..+..
T Consensus 416 llaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~----~eev~e~L~~~L-~dd~~~~~~ 490 (963)
T 4ady_A 416 LYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA----NIEVYEALKEVL-YNDSATSGE 490 (963)
T ss_dssp HHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC----CHHHHHHHHHHH-HTCCHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHH-hcCCHHHHH
Confidence 9999987433 34455554443310 000 37999999999999864222 235678888885 666665554
Q ss_pred HHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhc--CCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhc
Q 007343 194 NCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI--KEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ 271 (607)
Q Consensus 194 ~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l--~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~ 271 (607)
.|..+|.-+.--.+. ..++..|+..+ ...+.|.+-..+ .|+.....+++.+..+++.+. .
T Consensus 491 ~AalALGli~vGTgn--------------~~ai~~LL~~~~e~~~e~vrR~aal-gLGll~~g~~e~~~~li~~L~---~ 552 (963)
T 4ady_A 491 AAALGMGLCMLGTGK--------------PEAIHDMFTYSQETQHGNITRGLAV-GLALINYGRQELADDLITKML---A 552 (963)
T ss_dssp HHHHHHHHHHTTCCC--------------HHHHHHHHHHHHHCSCHHHHHHHHH-HHHHHTTTCGGGGHHHHHHHH---H
T ss_pred HHHHHHhhhhcccCC--------------HHHHHHHHHHHhccCcHHHHHHHHH-HHHhhhCCChHHHHHHHHHHH---h
Confidence 566666655321111 12344444332 234456554333 344334455566655555544 3
Q ss_pred cCchHHHHHHHHHHH-hh-cCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccC
Q 007343 272 HANGAVVLSTIKVFL-HL-TLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYN 349 (607)
Q Consensus 272 ~~n~aVv~~ai~~i~-~l-~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~ 349 (607)
+.++.|.+.++-++. .+ +.... .. +...|-.+.++.+.++|-.|.-.+..+....|+.....+.. +..+.
T Consensus 553 ~~dp~vRygaa~alglAyaGTGn~----~a---Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~-L~~~~ 624 (963)
T 4ady_A 553 SDESLLRYGGAFTIALAYAGTGNN----SA---VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQL-LSKSH 624 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSCCH----HH---HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTT-GGGCS
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCH----HH---HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHH-HHhcC
Confidence 578888888876553 22 22221 12 22233334456778899999999988877777643333222 22344
Q ss_pred CCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCC-----hHHHHHHHHHhhhh
Q 007343 350 EPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFLEM 420 (607)
Q Consensus 350 d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~-----~~~~v~~ll~ll~~ 420 (607)
| ..||+-+---|-.++..+.-..+++-|..+..|.|.++++.++.++|.++....+ ...+...+.+.+..
T Consensus 625 d-~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 625 N-AHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp C-HHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred C-HHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence 4 5699998888888877666788888888888899999999999999999876443 23445555555543
No 54
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.41 E-value=0.00046 Score=81.44 Aligned_cols=356 Identities=11% Similarity=0.099 Sum_probs=177.4
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhh-CCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcccc
Q 007343 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (607)
Q Consensus 131 e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~-~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~ 209 (607)
+--+.+-..+..++.++.+.||++++.++..+.+. .|+.- +++++.|.+++ +.+|+..+.+++.++.++++.....
T Consensus 81 ~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W--p~ll~~L~~~l-~s~~~~~~~~aL~~l~~i~~~~~~~ 157 (960)
T 1wa5_C 81 NNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW--PTLLSDLASRL-SNDDMVTNKGVLTVAHSIFKRWRPL 157 (960)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC--TTHHHHHHTTC-CSSCTTHHHHHHHHHHHHHGGGTTS
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch--hHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444455555556699999999999999886 56533 56677777774 6778888889999999998643210
Q ss_pred --chhhhhhHhhhcchHHHHHHHhhcCCCChhHHH--HHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHH
Q 007343 210 --SEEASREREALISKPVIYYLLNRIKEFSEWAQC--LVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVF 285 (607)
Q Consensus 210 --~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi--~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i 285 (607)
..+..++ +..+++.. ..+..++ .+.+.+....+ ++......+ .++..+++++
T Consensus 158 ~~~~~~~~~---------l~~~l~~~--~~~ll~~~~~~~~~l~~~~~-~~~~~~~~~------------~~~~~~~k~~ 213 (960)
T 1wa5_C 158 FRSDELFLE---------IKLVLDVF--TAPFLNLLKTVDEQITANEN-NKASLNILF------------DVLLVLIKLY 213 (960)
T ss_dssp CCCHHHHHH---------HHHHHHHH--HHHHHHHHHHHHHHTTCCC---CHHHHHHH------------HHHHHHHHHH
T ss_pred hcChHHHHH---------HHHHHHHH--HHHHHHHHHHHHHHHHhcCC-CHHHHHHHH------------HHHHHHHHHH
Confidence 0000000 11111110 0000110 00111111000 000000000 1222234444
Q ss_pred HhhcC-CcchhHHHHHHHHHHHHHHHhccC------C---------chhHHHHHHHHHHHHhhCCcccccccceee---e
Q 007343 286 LHLTL-SMTDVHQQVYERIKAPLLTLVSSG------S---------PEQSYAVLSHLHILVMRAPFIFASDYKHFY---C 346 (607)
Q Consensus 286 ~~l~~-~~~~~~~~~~~~l~~~L~~ll~s~------~---------~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~---~ 346 (607)
..+.. ..+......+....+.+..++... + ..+|--+++.+..+..++|+.|.+++..|+ .
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~ 293 (960)
T 1wa5_C 214 YDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITW 293 (960)
T ss_dssp HHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33321 111111111223333344444321 1 124556677788888888877766654332 0
Q ss_pred -------ccCCCHhHHHHHHHHHHHccCCCCHH------HHHHHHH-----HHhh----c-----CCH------------
Q 007343 347 -------QYNEPSYVKKLKLEMLTAVANESNTY------EIVTELC-----EYAA----N-----VDI------------ 387 (607)
Q Consensus 347 -------~~~d~~~Ik~~kL~iL~~l~n~~N~~------~Iv~eL~-----~y~~----~-----~d~------------ 387 (607)
.......++..+++.+..++...... ..+.+|. .++. + .|+
T Consensus 294 ~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d 373 (960)
T 1wa5_C 294 NLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSD 373 (960)
T ss_dssp HHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC--
T ss_pred HHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCccc
Confidence 11334568999999999887543211 3334433 2221 1 111
Q ss_pred --HHHHHHHHHHHHHHcccCCh--HHHHHHHHHhhhh-----cCchhhHH-HHHHHHHHHHhC--CC--Cch-----hHH
Q 007343 388 --PIARESIRAVGKIALQQYDV--NAIVDRLLQFLEM-----EKDYVTAE-ALVLVKDLLRKY--PQ--WSH-----DCI 448 (607)
Q Consensus 388 --~~~~~~i~~I~~la~k~~~~--~~~v~~ll~ll~~-----~~~~v~~e-~i~~i~~i~~~~--p~--~~~-----~~~ 448 (607)
+.++.+...+..++..+++. ..++..+.+.+.. ..+--..| ++..+..+..+. ++ ... ...
T Consensus 374 ~~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~ 453 (960)
T 1wa5_C 374 TDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV 453 (960)
T ss_dssp --CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred ccCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHH
Confidence 24556677777788777631 2233444444431 11212223 334445554321 11 010 222
Q ss_pred HHHHh-hhh--ccC--CchHHHHHHHHHHhcccCCCCC--hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhh
Q 007343 449 AVVGS-ISS--QNV--QEPKAKAALIWMLGEYSQDMQD--APYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (607)
Q Consensus 449 ~~l~~-l~~--~~~--~~~~~~~~~iwilGEy~~~i~~--~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~ 514 (607)
..+.+ +.. .+- ..|-+|.+++|.+|.|++.+.. ...++..+++.+.+.+ +.||...-.|+..+.-
T Consensus 454 ~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE-YVVYTYAAITIEKILT 525 (960)
T ss_dssp HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHh
Confidence 22222 110 111 2678899999999999987742 3345666667776666 8999999999988764
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.37 E-value=1.3e-07 Score=84.03 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=61.6
Q ss_pred hhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcC
Q 007343 66 GEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (607)
Q Consensus 66 ~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~ 145 (607)
+.++.++.+++...|..+.-.+..+.. +. +..+.+-+.|+|+.+|..|+++++.++.++.++ .+.+++.
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~--~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~----~L~~~L~ 83 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMGD--EA-----FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVE----PLIKLLE 83 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCSS--TT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHH----HHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCc--hH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHc
Confidence 344556666666666555544444322 11 355666666666666666666666666554333 3334445
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHH
Q 007343 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQ 200 (607)
Q Consensus 146 d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ 200 (607)
|+++.||..|+.++.++. +++.++.|.+++ +|+|+.|+.+|..+|.
T Consensus 84 d~~~~VR~~A~~aL~~~~--------~~~a~~~L~~~l-~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIG--------GERVRAAMEKLA-ETGTGFARKVAVNYLE 129 (131)
T ss_dssp HCCTHHHHHHHHHHHHHC--------SHHHHHHHHHHT-TSCCTHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHHHhC--------cHHHHHHHHHHH-hCCCHHHHHHHHHHHH
Confidence 666666666666666653 123455566653 6666666666665553
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.37 E-value=5.7e-06 Score=81.26 Aligned_cols=197 Identities=13% Similarity=0.051 Sum_probs=142.3
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCC--CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhh
Q 007343 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (607)
Q Consensus 136 l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~--~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~ 213 (607)
+-+.+.+.+.|+++.+|+.|+.++.++....|+.... .++.+.|..++.+|+|+.|+..|+.++..++..-+.
T Consensus 16 l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~----- 90 (242)
T 2qk2_A 16 MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK----- 90 (242)
T ss_dssp SCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-----
T ss_pred CCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-----
Confidence 3344667788999999999999999999876664321 235666777641499999999999999999864221
Q ss_pred hhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhc-CCc
Q 007343 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT-LSM 292 (607)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~-~~~ 292 (607)
.+ .-....++..|++.+.+.++-.+......|..+....+ ...+++.+...+++.|+.|..+++..+..+. ...
T Consensus 91 --~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 91 --RF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp --GG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred --hH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 11 11113467788888889888888777777776544322 3468889999999999999999999888743 222
Q ss_pred ch-hHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc-ccccccc
Q 007343 293 TD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYK 342 (607)
Q Consensus 293 ~~-~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~-~~~~~~~ 342 (607)
++ .....+..+.+.|..+++++.+++|-.+...+..+....+. .+.+++.
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 22 12234567888889999999999999999999998876554 3555543
No 57
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.35 E-value=0.00019 Score=77.54 Aligned_cols=302 Identities=12% Similarity=0.026 Sum_probs=196.2
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------chhhhhhhhhccCCCchhHHHHHHHHHhhccCC
Q 007343 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN 94 (607)
Q Consensus 22 ~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d~-------s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~ 94 (607)
+..+-..|++ ++.+.+..+. ..+..+..+.+- ....+..++++.+++...++-+--++.+++..+
T Consensus 4 l~~lv~~L~s-------~~~~~q~~A~-~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 4 IPKAVQYLSS-------QDEKYQAIGA-YYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp HHHHHHHHHS-------SCTHHHHHHH-HHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCC-------CCHHHHHHHH-HHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4555556665 3345566666 445555555432 224566789999999999999999999998776
Q ss_pred ChHHHHH-----HHHHHHHcC-CCCHHHHHHHHHHhhcCCh-----HhhHHHHHHHHhhhcC--------C--------C
Q 007343 95 PDLALLT-----INFLQRDCK-DEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLK--------D--------N 147 (607)
Q Consensus 95 ~el~~L~-----iNtl~kDl~-~~n~~ir~lALr~l~~i~~-----~e~~~~l~~~i~~~L~--------d--------~ 147 (607)
++.-..+ +..|.+=|. ++++.++..|..+|+++.. ..+++..+|.+.+++. + .
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 7654444 678888888 8899999999988888732 2355577788888882 2 3
Q ss_pred ChHHHHHHHHHHHHHHhhCCC---CcCCC-CchHHHHHhhcCC------CChhHHHHHHHHHHHHHhhc----cccch--
Q 007343 148 NSYVRTVAVIGVLKLYHISAP---TCIDA-DFPPTLKHLMLND------PDPQVVANCLSALQEIWSLE----ASTSE-- 211 (607)
Q Consensus 148 ~~~VRK~A~lal~kl~~~~p~---~~~~~-~~~~~L~~lLl~D------~d~~V~~~a~~~L~ei~~~~----~~~~~-- 211 (607)
++.|.+.|+.++..+... |+ .+.+. +.++.|..+| .+ .|..++-+|+.+|..+...- +....
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYV-QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHH-HHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHH-HhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 567888999999998764 43 22233 7888888875 42 45566777776666553110 00000
Q ss_pred -------------hhh-----------------------h-hHhhhcchHHHHHHHhhcC-CCChhHHHHHHHHHhccCC
Q 007343 212 -------------EAS-----------------------R-EREALISKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVP 253 (607)
Q Consensus 212 -------------~~~-----------------------~-~~~~li~~~~~~~Ll~~l~-~~~~w~qi~iL~lL~~~~~ 253 (607)
..| + ....+++...+..|+..+. ..++-.+......|..++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 000 0 0112334445555555553 3457788888888887765
Q ss_pred CChh---HH-H------HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCc------h
Q 007343 254 LDSN---EI-F------DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSP------E 317 (607)
Q Consensus 254 ~~~~---~~-~------~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~------n 317 (607)
.+.. +. . ..++.+..+|++.+..|..+|+.++-.+... +..+..+-....++|+.+|.++++ +
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 4322 11 1 3467888899999999999999999888764 334333334567788999987654 5
Q ss_pred hHHHHHHHHHHHHhhCC
Q 007343 318 QSYAVLSHLHILVMRAP 334 (607)
Q Consensus 318 i~y~~L~~i~~l~~~~p 334 (607)
+...++..+..++...|
T Consensus 393 v~~~~l~~l~ni~~~~~ 409 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQP 409 (457)
T ss_dssp HHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcCH
Confidence 77788888887776554
No 58
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.32 E-value=2.7e-07 Score=81.93 Aligned_cols=90 Identities=17% Similarity=0.123 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHH
Q 007343 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (607)
Q Consensus 101 ~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~ 180 (607)
.++.+.+.|+|+|+.+|..|+.+++.++.+. .+.+.+.+.|+++.||..|+.++.++.. ++.++.|.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~ 79 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLI 79 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHH
Confidence 4567788889999999999999999998875 2566778889999999999999887741 24567788
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHh
Q 007343 181 HLMLNDPDPQVVANCLSALQEIWS 204 (607)
Q Consensus 181 ~lLl~D~d~~V~~~a~~~L~ei~~ 204 (607)
.+| .|+|+.|+.+|+.+|..+..
T Consensus 80 ~~L-~d~~~~VR~~A~~aL~~~~~ 102 (131)
T 1te4_A 80 KLL-EDDSGFVRSGAARSLEQIGG 102 (131)
T ss_dssp HHH-HHCCTHHHHHHHHHHHHHCS
T ss_pred HHH-cCCCHHHHHHHHHHHHHhCc
Confidence 874 88999999999999988874
No 59
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.31 E-value=9.9e-05 Score=81.67 Aligned_cols=333 Identities=11% Similarity=0.099 Sum_probs=190.4
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh-ccccchh
Q 007343 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL-EASTSEE 212 (607)
Q Consensus 137 ~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~-~~~~~~~ 212 (607)
++.+.+.|.++++.++..|+.++..+...+++ .+.+.+.++.|.++| ..+++.|...|+.+|..+... +++.
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~~n--- 125 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQDN--- 125 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSSCHHH---
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccCCHHH---
Confidence 45566778888999999999998888754432 233457889999985 888999999999999998753 2211
Q ss_pred hhhhHhhhcchHHHHHHHhhcCC-CChhHHHHHHHHHhccCCCChhHHHH----HHHHHHHHh-----------------
Q 007343 213 ASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSNEIFD----IMNLLEDRL----------------- 270 (607)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~l~~-~~~w~qi~iL~lL~~~~~~~~~~~~~----il~~l~~~L----------------- 270 (607)
+..++....+..|++.|.. .++-.|..+...|..+... ++-... .+..|..++
T Consensus 126 ----k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 126 ----KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp ----HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred ----HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 1111112235555555543 3555566655555554432 222222 233444433
Q ss_pred c-cCchHHHHHHHHHHHhhcCCcchhHHHHHH--HHHHHHHHHhcc------CCchhHHHHHHHHHHHHhh----CCcc-
Q 007343 271 Q-HANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS------GSPEQSYAVLSHLHILVMR----APFI- 336 (607)
Q Consensus 271 ~-~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~--~l~~~L~~ll~s------~~~ni~y~~L~~i~~l~~~----~p~~- 336 (607)
+ +....|+..|+.++-.+....++.+..+.+ -+..+|+.++.+ .+....--++..+..+... .|..
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~ 280 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAE 280 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchh
Confidence 1 124688999999999998655444443332 345567777753 2333444444444333322 1211
Q ss_pred -cc--------------c-cccee-----------eeccCCCHhHHHHHHHHHHHccCCC-----CH------HHHHHHH
Q 007343 337 -FA--------------S-DYKHF-----------YCQYNEPSYVKKLKLEMLTAVANES-----NT------YEIVTEL 378 (607)
Q Consensus 337 -~~--------------~-~~~~f-----------~~~~~d~~~Ik~~kL~iL~~l~n~~-----N~------~~Iv~eL 378 (607)
+. + -+..+ +........++.-+.-.|..||..+ .+ ...+.-|
T Consensus 281 ~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~L 360 (584)
T 3l6x_A 281 RYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360 (584)
T ss_dssp C--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHH
Confidence 00 0 00000 1112334567778888888886432 11 1335566
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHHcccCC---h-HHHHHHHHHhhhhcC--------chhhHHHHHHHHHHHHhCCCCchh
Q 007343 379 CEYAANVDIPIARESIRAVGKIALQQYD---V-NAIVDRLLQFLEMEK--------DYVTAEALVLVKDLLRKYPQWSHD 446 (607)
Q Consensus 379 ~~y~~~~d~~~~~~~i~~I~~la~k~~~---~-~~~v~~ll~ll~~~~--------~~v~~e~i~~i~~i~~~~p~~~~~ 446 (607)
.+.+.+.+...++.++.+++.++.--.. . ...+..|+++|..+. +.+...+...+.+|+...|+....
T Consensus 361 v~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~ 440 (584)
T 3l6x_A 361 ADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKK 440 (584)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 7777888888888888888888863322 1 357788888887653 223334445566777666654332
Q ss_pred -----HHHHHHhhhhccCCchHHHHHHHHHHhcccCC
Q 007343 447 -----CIAVVGSISSQNVQEPKAKAALIWMLGEYSQD 478 (607)
Q Consensus 447 -----~~~~l~~l~~~~~~~~~~~~~~iwilGEy~~~ 478 (607)
++..+.+++...-..+.+..+++|++.....+
T Consensus 441 I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 441 LRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred HHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 23334444422113567777788888776553
No 60
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.30 E-value=7.6e-05 Score=80.44 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=159.8
Q ss_pred HHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcC----------CCChhHHHHHHHHHHHHHhhccccchhhhhhHhhh
Q 007343 154 VAVIGVLKLYHISAP---TCIDADFPPTLKHLMLN----------DPDPQVVANCLSALQEIWSLEASTSEEASREREAL 220 (607)
Q Consensus 154 ~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~----------D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~l 220 (607)
.|+-++.++- .+|+ .+.+.+.++.|..+|.. ..++.+..+|..+|..++..++.. ...+
T Consensus 167 qAv~aL~nls-~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~-------k~~i 238 (458)
T 3nmz_A 167 PAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN-------KATL 238 (458)
T ss_dssp HHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHH-------HHHH
T ss_pred HHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCccc-------HHHH
Confidence 7788888773 2332 33345778888887521 135778999999999998654311 1111
Q ss_pred -cchHHHHHHHhhcCCCChhHHHHHHHHHhccCCC-ChhHHHH-----HHHHHHHHh-ccCchHHHHHHHHHHHhhcCCc
Q 007343 221 -ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFD-----IMNLLEDRL-QHANGAVVLSTIKVFLHLTLSM 292 (607)
Q Consensus 221 -i~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~-~~~~~~~-----il~~l~~~L-~~~n~aVv~~ai~~i~~l~~~~ 292 (607)
.....+..|++.+...++-.|......|....-. +++-... .++.+..+| ++.+..+...|+.++..+....
T Consensus 239 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~ 318 (458)
T 3nmz_A 239 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318 (458)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCC
Confidence 1233577788888778888998888888877653 3332222 355666654 5567788888888888876522
Q ss_pred chhHHHHH--HHHHHHHHHHhccCCc----hhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHcc
Q 007343 293 TDVHQQVY--ERIKAPLLTLVSSGSP----EQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVA 366 (607)
Q Consensus 293 ~~~~~~~~--~~l~~~L~~ll~s~~~----ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~ 366 (607)
++.+.++. ....++|+.++.++++ +++.-+...+..+... + ..
T Consensus 319 ~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~-------------~-a~----------------- 367 (458)
T 3nmz_A 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL-------------I-AT----------------- 367 (458)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHH-------------H-TT-----------------
T ss_pred HHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhc-------------c-cC-----------------
Confidence 33333333 2345667777765433 2444443333333320 0 00
Q ss_pred CCCCHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh------HHHHHHHHHhhhhcCchhhHHHHHHHHH
Q 007343 367 NESNTYE-----IVTELCEYAANVDIPIARESIRAVGKIALQQYDV------NAIVDRLLQFLEMEKDYVTAEALVLVKD 435 (607)
Q Consensus 367 n~~N~~~-----Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~------~~~v~~ll~ll~~~~~~v~~e~i~~i~~ 435 (607)
+++|... .+.-|.+.+.+.+.+.+++++.+|+.++...++. ...+..|++++..+...+...+...+.+
T Consensus 368 ~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 368 NEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447 (458)
T ss_dssp CHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 1222221 3455677778888999999999999999654431 2478999999988877888888899999
Q ss_pred HHHhCCCCc
Q 007343 436 LLRKYPQWS 444 (607)
Q Consensus 436 i~~~~p~~~ 444 (607)
|....|..+
T Consensus 448 L~~~~p~ky 456 (458)
T 3nmz_A 448 LMANRPAKY 456 (458)
T ss_dssp HHTCCSCC-
T ss_pred HHcCCHhhh
Confidence 999888764
No 61
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.26 E-value=0.0002 Score=79.25 Aligned_cols=312 Identities=13% Similarity=0.085 Sum_probs=196.4
Q ss_pred CCCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCC-----c--chhhhhhhhhccCCCchhHHHHHHH
Q 007343 14 SQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID-----V--SAVFGEMVMCSATSDIVLKKMCYLY 86 (607)
Q Consensus 14 ~~~~~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~G~d-----~--s~lf~~vi~l~~s~~~~~Krl~YL~ 86 (607)
-..++.+++..+-..|++ ++.+.+.++.. .+..+..|.+ + ....+..|+++.+++...+.-+--+
T Consensus 42 ~~~~~~~~i~~LV~~L~s-------~~~~~q~~Aa~-~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~A 113 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGF-------RLDAVKSNAAA-YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGA 113 (584)
T ss_dssp CCCCCCCCHHHHHHHTTC-------SCHHHHHHHHH-HHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCC-------CCHHHHHHHHH-HHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHH
Confidence 345567889888888876 44566777774 4566666543 1 1245667899999999999999999
Q ss_pred HHhhccC-CChHHHH-----HHHHHHHHcCC-CCHHHHHHHHHHhhcCCh-----HhhHHHHHHHHhhhc----------
Q 007343 87 VGNYAKV-NPDLALL-----TINFLQRDCKD-EDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGL---------- 144 (607)
Q Consensus 87 l~~~~~~-~~el~~L-----~iNtl~kDl~~-~n~~ir~lALr~l~~i~~-----~e~~~~l~~~i~~~L---------- 144 (607)
+.+++.. +++--.. ++..|.+-|.+ +++.++..|..+|.++.. ..+++..+|++.+++
T Consensus 114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC--
T ss_pred HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccc
Confidence 9999864 4443222 36677777775 567777765544444422 234444556666644
Q ss_pred --------CCCChHHHHHHHHHHHHHHhhCCC----CcCCCCchHHHHHhhc-----CCCChhHHHHHHHHHHHHHhhc-
Q 007343 145 --------KDNNSYVRTVAVIGVLKLYHISAP----TCIDADFPPTLKHLML-----NDPDPQVVANCLSALQEIWSLE- 206 (607)
Q Consensus 145 --------~d~~~~VRK~A~lal~kl~~~~p~----~~~~~~~~~~L~~lLl-----~D~d~~V~~~a~~~L~ei~~~~- 206 (607)
...++.|++.|+-|+..+-..+++ .+...+.++.|..+|. .+.+...+-+|+.+|..++...
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence 123689999999999988654433 1122466666666642 2356667888888887665321
Q ss_pred ---ccc--chh------------hhhhHhhhcchHHHHHHHhhcC-CCChhHHHHHHHHHhccCCCCh---hHH------
Q 007343 207 ---AST--SEE------------ASREREALISKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVPLDS---NEI------ 259 (607)
Q Consensus 207 ---~~~--~~~------------~~~~~~~li~~~~~~~Ll~~l~-~~~~w~qi~iL~lL~~~~~~~~---~~~------ 259 (607)
|.. ..+ .......+.+...++.|+..+. ..++..|......|..++..+. ...
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 100 000 0001223344555666666663 3578888888888887754431 111
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccC--------CchhHHHHHHHHHHHHh
Q 007343 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSG--------SPEQSYAVLSHLHILVM 331 (607)
Q Consensus 260 ~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~--------~~ni~y~~L~~i~~l~~ 331 (607)
...++.|..+|++.+..|+..|+.++-++.... ..+..+-....+.|+.+|.++ ..++..-++..+..++.
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 245778888999999999999999998887542 233222234567788888765 24667778888777776
Q ss_pred hCC
Q 007343 332 RAP 334 (607)
Q Consensus 332 ~~p 334 (607)
..|
T Consensus 433 ~~~ 435 (584)
T 3l6x_A 433 ENL 435 (584)
T ss_dssp TCH
T ss_pred CCH
Confidence 554
No 62
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.21 E-value=3e-05 Score=80.92 Aligned_cols=219 Identities=13% Similarity=0.054 Sum_probs=148.8
Q ss_pred CCHHHHHHHHHHhhcCC--hH---hhH---HHHHHHHhhhcCCCChHHHHHHHHHHHHHHhh-CC---CCcCCCCchHHH
Q 007343 112 EDPMIRGLALRSLCSLR--VA---NLV---EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SA---PTCIDADFPPTL 179 (607)
Q Consensus 112 ~n~~ir~lALr~l~~i~--~~---e~~---~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~-~p---~~~~~~~~~~~L 179 (607)
.++.++..|..+|.++. .+ ..+ ...+|.+.++|.++++.||..|+-++..+-.. ++ +.+.+.+.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 45778888888887773 22 222 34588999999999999999999999888653 22 233346788999
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCC--hh--HHHHHHHHHhccCC--
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS--EW--AQCLVLELVAKYVP-- 253 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~--~w--~qi~iL~lL~~~~~-- 253 (607)
.++|+...++.++.+|+.+|..+...+++. .+.+ ......+..|++.+...+ +| .+......|.....
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~n----k~~i--~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTEN----KADI--CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHH----HHHH--HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhh----hHHH--HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 997556778899999999999987633221 1111 102234566666665432 34 44444444443321
Q ss_pred -CChhHHHH-----HHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHH
Q 007343 254 -LDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHL 326 (607)
Q Consensus 254 -~~~~~~~~-----il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i 326 (607)
.+++.... .+..+..+|++.+..+..+|+.++..+....++.+..+.+ -..++|+.++.+++++++-.+...+
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33333222 4677888899999999999999999988544444434433 3567899999989999999999999
Q ss_pred HHHHhhCCcc
Q 007343 327 HILVMRAPFI 336 (607)
Q Consensus 327 ~~l~~~~p~~ 336 (607)
..+....|..
T Consensus 330 ~nL~~~~~~~ 339 (354)
T 3nmw_A 330 RNLMANRPAK 339 (354)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHcCCHHH
Confidence 9999887753
No 63
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.10 E-value=8.6e-05 Score=73.45 Aligned_cols=207 Identities=16% Similarity=0.176 Sum_probs=140.6
Q ss_pred HhhhcCCCChHHHHHHHHHHHH-HHhhCCCCcC-CC---CchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc--ccchh
Q 007343 140 LGLGLKDNNSYVRTVAVIGVLK-LYHISAPTCI-DA---DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA--STSEE 212 (607)
Q Consensus 140 i~~~L~d~~~~VRK~A~lal~k-l~~~~p~~~~-~~---~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~--~~~~~ 212 (607)
....+.++++.-||.|+.++.. +....|+... .. ++++.|.+.+.+|+|+.|+..|+.++..++..-. +...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~- 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK- 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH-
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH-
Confidence 3456689999999999999999 8876777652 22 3556666764379999999999999999986422 1100
Q ss_pred hhhhHhhhcchHHHHHHHhhcCCCChhHHHH---HHHHHhccC-CCChh-HHHHHHHHHHHHhccCchHHHHHHHHHHHh
Q 007343 213 ASREREALISKPVIYYLLNRIKEFSEWAQCL---VLELVAKYV-PLDSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFLH 287 (607)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~---iL~lL~~~~-~~~~~-~~~~il~~l~~~L~~~n~aVv~~ai~~i~~ 287 (607)
-....++..++..+++..+=.+-. .|+.+.... |.... ....+++.+...++|.|+.|..++++++..
T Consensus 100 -------~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 100 -------DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp -------HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 011235677788887776555433 343333332 21111 134688899999999999999999998876
Q ss_pred hcCCcc---hhHHHHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCc-ccccccceeeeccCCCHhHHHHHHHH
Q 007343 288 LTLSMT---DVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYKHFYCQYNEPSYVKKLKLEM 361 (607)
Q Consensus 288 l~~~~~---~~~~~~~-~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~-~~~~~~~~f~~~~~d~~~Ik~~kL~i 361 (607)
+....+ ..-...+ ..+.+.|..+++++++++|-.+.+.+..+....++ .+.+++..+ + .+|+.|+.-
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L----d---~~k~~ki~~ 244 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL----D---NLKRKKIEE 244 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS----C---HHHHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH----h---HHHHHHHHH
Confidence 653222 2112345 67888889999999999999999999998876544 466655443 2 267777664
No 64
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.10 E-value=5.5e-05 Score=81.55 Aligned_cols=218 Identities=12% Similarity=0.056 Sum_probs=147.4
Q ss_pred CCHHHHHHHHHHhhcCC--hH---hhH---HHHHHHHhhhcCCCChHHHHHHHHHHHHHHhh-CC---CCcCCCCchHHH
Q 007343 112 EDPMIRGLALRSLCSLR--VA---NLV---EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SA---PTCIDADFPPTL 179 (607)
Q Consensus 112 ~n~~ir~lALr~l~~i~--~~---e~~---~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~-~p---~~~~~~~~~~~L 179 (607)
.++.++..|..+|+++. .+ ..+ ...+|.+.++|.++++.|+..|+.++..+-.. ++ +.+.+.+.++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 45677777777777763 22 222 34588999999999999999999999888542 22 233346788899
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCC--Chh--HHHHHHHHHhccC---
Q 007343 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF--SEW--AQCLVLELVAKYV--- 252 (607)
Q Consensus 180 ~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~--~~w--~qi~iL~lL~~~~--- 252 (607)
.++|+...++.++.+|+.+|..+...+++. ...+ ......+..|.+.+... .+| .+......|....
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~n----k~~I--~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTEN----KADI--CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHH----HHHH--HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHH----HHHH--HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 997556678899999999999887633221 1111 11223455666655433 344 4444444444332
Q ss_pred CCChhHHHH-----HHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHH
Q 007343 253 PLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHL 326 (607)
Q Consensus 253 ~~~~~~~~~-----il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i 326 (607)
..+++.... .+..+..+|++.+..|..+|+.++..+....++....+.+ -..++|+.++.++++.++-.+...+
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 233333322 4667788899999999999999999987544444444443 3567889999889999999999999
Q ss_pred HHHHhhCCc
Q 007343 327 HILVMRAPF 335 (607)
Q Consensus 327 ~~l~~~~p~ 335 (607)
..++...|.
T Consensus 446 ~nL~~~~p~ 454 (458)
T 3nmz_A 446 RNLMANRPA 454 (458)
T ss_dssp HHHHTCCSC
T ss_pred HHHHcCCHh
Confidence 999988875
No 65
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.08 E-value=2.8e-05 Score=76.20 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=122.8
Q ss_pred CChHHHHHHHHHHHHHHhc-C----CCcchhhhhhhhhcc-CCCchhHHHHHHHHHhhccCC-C---hHHHHHHHHHHHH
Q 007343 39 GIDDSKRELFKKVISYMTI-G----IDVSAVFGEMVMCSA-TSDIVLKKMCYLYVGNYAKVN-P---DLALLTINFLQRD 108 (607)
Q Consensus 39 ~~~~~k~~~l~kli~~~~~-G----~d~s~lf~~vi~l~~-s~~~~~Krl~YL~l~~~~~~~-~---el~~L~iNtl~kD 108 (607)
.+-..|+.++..+-.+... + .+...++..+.+.+. .++...+..+.-.+..++..- + ...-.++..+.+-
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~ 106 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEK 106 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3456788888777776654 2 233444555566775 888888888888887776421 1 2345678899999
Q ss_pred cCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC-CCCcC---CCCchHHHHHhhc
Q 007343 109 CKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCI---DADFPPTLKHLML 184 (607)
Q Consensus 109 l~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~-p~~~~---~~~~~~~L~~lLl 184 (607)
+.|+++.+|..|..++..+....-.+.+++.+...+.|++|.||..++..+..+.... |+... -+.+++.+..+|
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l- 185 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL- 185 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH-
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHh-
Confidence 9999999999888877766433235678888889999999999999999999976654 54211 135677888885
Q ss_pred CCCChhHHHHHHHHHHHHHhh
Q 007343 185 NDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 185 ~D~d~~V~~~a~~~L~ei~~~ 205 (607)
.|+++.|+.+|..++..+...
T Consensus 186 ~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 186 NEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp TSSCHHHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 66
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.03 E-value=6.8e-05 Score=76.16 Aligned_cols=152 Identities=16% Similarity=0.070 Sum_probs=108.9
Q ss_pred HHHhh-hcCCCChHHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhh
Q 007343 138 GPLGL-GLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (607)
Q Consensus 138 ~~i~~-~L~d~~~~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~ 213 (607)
|++.. +|.++++.||..|+.++..+...+|+ .+.+.+.++.|..+|..++++.|+.+|+.+|..++..++.
T Consensus 84 ~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~----- 158 (296)
T 1xqr_A 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA----- 158 (296)
T ss_dssp HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH-----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH-----
Confidence 44556 89999999999999999999887764 2334578889999864467889999999999988754321
Q ss_pred hhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcc
Q 007343 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT 293 (607)
Q Consensus 214 ~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~ 293 (607)
....+... ..++.+..+|++.+..|..+|+.++-++....+
T Consensus 159 -----------~~~~~~~~----------------------------ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~ 199 (296)
T 1xqr_A 159 -----------GLLQFLRL----------------------------DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP 199 (296)
T ss_dssp -----------HHHHHHHT----------------------------THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG
T ss_pred -----------HHHHHHHC----------------------------CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh
Confidence 01111110 135566666777788888888888877754434
Q ss_pred hhHHHHHH-HHHHHHHHHhccCCchhHHHHHHHHHHHHhhC
Q 007343 294 DVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (607)
Q Consensus 294 ~~~~~~~~-~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~ 333 (607)
+....+.+ .+.++|+.+|.++++.++..+++.+..++...
T Consensus 200 ~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 200 EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 33333332 35677889999999999999999999888654
No 67
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.02 E-value=0.0008 Score=79.22 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=68.7
Q ss_pred CCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC--------Ch---HhhHHHHHHHHhh
Q 007343 74 TSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------RV---ANLVEYLVGPLGL 142 (607)
Q Consensus 74 s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i--------~~---~e~~~~l~~~i~~ 142 (607)
++|-..|+-+.-++..+- .+|+....+..-+. .+.++.+|-.|+.++-+. .. ..+-+.+...+.+
T Consensus 36 ~~~~~~r~~A~~~L~~~~-~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~ 111 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQ-VSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITR 111 (963)
T ss_dssp CCCHHHHHHHHHHHHHHH-HSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHH
Confidence 455556666666665543 24553222222222 245666666666655542 11 1233344444433
Q ss_pred hcCCCChHHHHHHHHHHHHHHhh-CCCCcCCCCchHHHHHhhcCC-----CChhHHHHHHHHHHHHHh
Q 007343 143 GLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLND-----PDPQVVANCLSALQEIWS 204 (607)
Q Consensus 143 ~L~d~~~~VRK~A~lal~kl~~~-~p~~~~~~~~~~~L~~lLl~D-----~d~~V~~~a~~~L~ei~~ 204 (607)
. .+..++||.+.+.++..+.+. +|+.- +++++.|..++ +. +++..+-.++..|..+.+
T Consensus 112 ~-~~~~~~ir~kl~~~la~i~~~~~p~~W--p~~l~~l~~~~-~~~~~~~~~~~~~~~~l~iL~~l~e 175 (963)
T 2x19_B 112 F-ASGSKIVLTRLCVALASLALSMMPDAW--PCAVADMVRLF-QAEDSPVDGQGRCLALLELLTVLPE 175 (963)
T ss_dssp T-TTSCHHHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHHH-CC------CHHHHHHHHHHHHHHHH
T ss_pred H-cCCCHHHHHHHHHHHHHHHHHhCcccc--chHHHHHHHHH-hhhccCCCcHHHHHHHHHHHHhCHH
Confidence 2 224699999999999999876 36543 46777777764 43 255566666666666653
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.97 E-value=9.3e-05 Score=68.15 Aligned_cols=212 Identities=12% Similarity=0.112 Sum_probs=137.4
Q ss_pred CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC--CCChhHHHHHHHHHhc
Q 007343 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK--EFSEWAQCLVLELVAK 250 (607)
Q Consensus 173 ~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~--~~~~w~qi~iL~lL~~ 250 (607)
.++.+.+...| +|.-=.|+.||+.++..+.+..|+.. .+...+|+-.+. +.-|-. ..|-+.++.
T Consensus 31 ~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~el~------------epl~~kL~vm~~ksEaIplt-qeIa~a~G~ 96 (253)
T 2db0_A 31 ESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLY------------EPMLKKLFSLLKKSEAIPLT-QEIAKAFGQ 96 (253)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCGGGH------------HHHHHHHHHHHHHCCSHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhHHHH------------HHHHHHHHHHHhhcccCchH-HHHHHHHhH
Confidence 46788888874 66555899999999999988766421 235566655442 333332 233444444
Q ss_pred cCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHH
Q 007343 251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (607)
Q Consensus 251 ~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~ 330 (607)
.....|+.....++.+..-++-..+-+...-.-++-.+....|.+-.. +..=+.++++|++..=|.++|.-+.-+.
T Consensus 97 la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~----v~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 97 MAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS----IVRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred HHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH----HHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 444466677777777776666555443333332222222222322222 2333467788888778999999998888
Q ss_pred hhCCccccccccee-eeccCCCHhHHHHHHHHHHHccCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHc
Q 007343 331 MRAPFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANES-NTYEIVTELCEYAANVDIPIARESIRAVGKIAL 402 (607)
Q Consensus 331 ~~~p~~~~~~~~~f-~~~~~d~~~Ik~~kL~iL~~l~n~~-N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~ 402 (607)
..+|..+.|++..+ -..+|++..||..+.+.|..++..+ -+..++.+-++-..+.+.....+...++++++.
T Consensus 173 en~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 173 ENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp TTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred ccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88888888887644 4567778889999999999987443 266677665555577777777888888888763
No 69
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.94 E-value=0.02 Score=64.82 Aligned_cols=443 Identities=14% Similarity=0.148 Sum_probs=259.9
Q ss_pred HHhhccCCChHHHHHHHHHHHHc--CCCCHHHHHHHHHHhhcCCh---HhhHHHHHHHHhhhc------CCCChHHHHHH
Q 007343 87 VGNYAKVNPDLALLTINFLQRDC--KDEDPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGL------KDNNSYVRTVA 155 (607)
Q Consensus 87 l~~~~~~~~el~~L~iNtl~kDl--~~~n~~ir~lALr~l~~i~~---~e~~~~l~~~i~~~L------~d~~~~VRK~A 155 (607)
+..|....+++.+| .+++ ....+-+|+++|-.++.+-. .+.-+.+...+...+ .+.+|++ .+
T Consensus 160 ~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~--~~ 232 (778)
T 3opb_A 160 LNKFKYNFKEVRFL-----VKELILRISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLS--II 232 (778)
T ss_dssp HHHSCCCSTTTTHH-----HHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHH--HH
T ss_pred HHHcCccccchhhH-----HHHhccccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHH--HH
Confidence 34455566775444 3444 46678999999988887622 333343443443333 2456664 56
Q ss_pred HHHHHHHHhhCCCCc----CCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHh
Q 007343 156 VIGVLKLYHISAPTC----IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN 231 (607)
Q Consensus 156 ~lal~kl~~~~p~~~----~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~ 231 (607)
+-++..+|-..|+.. ..+++.+.+.+.+..+.+..+..+++.+|...+.. +.|++. +.+..+..|..
T Consensus 233 ~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~------~~cR~~---I~~~~~~~L~~ 303 (778)
T 3opb_A 233 VKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID------ETMRTY---ITENYLQLLER 303 (778)
T ss_dssp HHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS------HHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC------cHHHHH---HHHhHHHHHHH
Confidence 666677787777653 45788898888765667777778888888776643 335332 33444444444
Q ss_pred hcCCCChhHHHHHHHHHhcc---CCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHH--HHHHH
Q 007343 232 RIKEFSEWAQCLVLELVAKY---VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAP 306 (607)
Q Consensus 232 ~l~~~~~w~qi~iL~lL~~~---~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~--~l~~~ 306 (607)
.+.. +-.+...+=.|.+. .........++.+.+...|.+......--|+..+-+++.. ++++..+.+ .....
T Consensus 304 ~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~ 380 (778)
T 3opb_A 304 SLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEI 380 (778)
T ss_dssp HTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHH
T ss_pred Hhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHH
Confidence 4432 22333222233222 1222233456788888888876655577888888877754 445543332 22233
Q ss_pred HHHHhcc-CCchhHHHHHHHHHHHHhhCCcccc----------------c-------------ccceee-----------
Q 007343 307 LLTLVSS-GSPEQSYAVLSHLHILVMRAPFIFA----------------S-------------DYKHFY----------- 345 (607)
Q Consensus 307 L~~ll~s-~~~ni~y~~L~~i~~l~~~~p~~~~----------------~-------------~~~~f~----------- 345 (607)
|+.++.+ .++.+.|-++..+.-+....|.... + ++..|-
T Consensus 381 Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp 460 (778)
T 3opb_A 381 LLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELIS 460 (778)
T ss_dssp HHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHH
Confidence 5666763 6778999999999888876554221 0 000000
Q ss_pred ----eccCCCHhHHHHHHHHHHHccCCC-CHHHH-----HHHHHHHhhcCCHH---HHHHHHHHHHHHHccc------CC
Q 007343 346 ----CQYNEPSYVKKLKLEMLTAVANES-NTYEI-----VTELCEYAANVDIP---IARESIRAVGKIALQQ------YD 406 (607)
Q Consensus 346 ----~~~~d~~~Ik~~kL~iL~~l~n~~-N~~~I-----v~eL~~y~~~~d~~---~~~~~i~~I~~la~k~------~~ 406 (607)
+..++...+|..+..+|..|+... |-..+ ++-|+.++.+.... .+..+..++++++..- +.
T Consensus 461 ~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~ 540 (778)
T 3opb_A 461 FLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKK 540 (778)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCC
Confidence 122344558888899999987554 43333 34477787765433 7888999999988542 21
Q ss_pred --hHHHHHHHHHhhhhc-C-c------------hhhHHHHHHHHHHHHhCC----CCchh------HHHHHHhhhhccCC
Q 007343 407 --VNAIVDRLLQFLEME-K-D------------YVTAEALVLVKDLLRKYP----QWSHD------CIAVVGSISSQNVQ 460 (607)
Q Consensus 407 --~~~~v~~ll~ll~~~-~-~------------~v~~e~i~~i~~i~~~~p----~~~~~------~~~~l~~l~~~~~~ 460 (607)
....+..|++||..+ + + --..|++..+.++..... +.+.. +...+.+++.+ +
T Consensus 541 ~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s--~ 618 (778)
T 3opb_A 541 YSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD--E 618 (778)
T ss_dssp SCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC--S
T ss_pred CccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC--C
Confidence 125788999998831 1 1 014577788888876431 22222 22334444322 3
Q ss_pred chHHHHHHHHHHhcccCCCC---------ChHH---HHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCchh------HH
Q 007343 461 EPKAKAALIWMLGEYSQDMQ---------DAPY---ILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPET------QK 522 (607)
Q Consensus 461 ~~~~~~~~iwilGEy~~~i~---------~~~~---~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~~~------~~ 522 (607)
.+.++++++|++.-....-+ ..+. -+..++.-...++ ..+|.++..|++-+-...|.-. ..
T Consensus 619 n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts~~~~ia~~ll~~~~ 697 (778)
T 3opb_A 619 NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATTIPLIAKELLTKKE 697 (778)
T ss_dssp SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHccc
Confidence 56788888888765442111 1121 2556666665566 9999988888777755554322 23
Q ss_pred HHHHHHHHhhcC-CChhHHhHHHHHH-HHcc
Q 007343 523 VLGAALAAGLAD-FHQDVHDRALFYH-RLLQ 551 (607)
Q Consensus 523 ~~~~~l~~~~~d-~~~dvrdRA~~y~-~Ll~ 551 (607)
.+..++..+..- .+.++|.||.... .|..
T Consensus 698 gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 698 LIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 455566666543 7999999998854 5553
No 70
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.93 E-value=0.00016 Score=73.48 Aligned_cols=148 Identities=16% Similarity=0.055 Sum_probs=110.7
Q ss_pred HHHHHHH-HcCCCCHHHHHHHHHHhhcCC--hHhhHH-----HHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhCCC---
Q 007343 101 TINFLQR-DCKDEDPMIRGLALRSLCSLR--VANLVE-----YLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAP--- 168 (607)
Q Consensus 101 ~iNtl~k-Dl~~~n~~ir~lALr~l~~i~--~~e~~~-----~l~~~i~~~L~-d~~~~VRK~A~lal~kl~~~~p~--- 168 (607)
.+..+.+ -|.++++.+|..|+.++|++. .++.-+ ..++++.++|. ++++.||++|+.|+..+.+.+|+
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~ 161 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLL 161 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 3456666 889999999999999999983 343322 35577778887 56899999999999999876654
Q ss_pred CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHH
Q 007343 169 TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (607)
Q Consensus 169 ~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL 248 (607)
.+.+.+.++.|..+| .++|+.|...|+.+|..++..+++. +..++....+..|+..+...++-.|...++.|
T Consensus 162 ~~~~~ggi~~L~~lL-~~~d~~v~~~A~~aLs~L~~~~~~~-------~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL 233 (296)
T 1xqr_A 162 QFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEH-------KGTLCSMGMVQQLVALVRTEHSPFHEHVLGAL 233 (296)
T ss_dssp HHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGG-------HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCChHH-------HHHHHHcCCHHHHHHHHcCCChhHHHHHHHHH
Confidence 333457888999985 8889999999999999998764431 11223334677788877777888899999988
Q ss_pred hccCCCCh
Q 007343 249 AKYVPLDS 256 (607)
Q Consensus 249 ~~~~~~~~ 256 (607)
.......+
T Consensus 234 ~~l~~~~~ 241 (296)
T 1xqr_A 234 CSLVTDFP 241 (296)
T ss_dssp HHHHTTCH
T ss_pred HHHHhCCh
Confidence 87655433
No 71
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.91 E-value=0.005 Score=72.58 Aligned_cols=446 Identities=8% Similarity=0.018 Sum_probs=211.1
Q ss_pred hhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC--------C---hHhhHHHH
Q 007343 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------R---VANLVEYL 136 (607)
Q Consensus 68 vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i--------~---~~e~~~~l 136 (607)
.+..+.++|-..|+-+.-++..+- .+|+....+..-+.. +.++.+|-.|+.++-+. . ...+-+.+
T Consensus 12 ~l~~~~~~d~~~r~~A~~~L~~~~-~~p~~w~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~l 87 (971)
T 2x1g_F 12 AVVSFYRSNSQNQAITHEWLTDAE-ASPQAWQFSWQLMQL---GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKI 87 (971)
T ss_dssp THHHHHTSTTTC----CHHHHHTT-TSTHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHH
Confidence 343344566677787888887754 457754444333322 57889998888877653 1 12334445
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCC------ChhHHHHHHHHHHHHHhh----c
Q 007343 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP------DPQVVANCLSALQEIWSL----E 206 (607)
Q Consensus 137 ~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~------d~~V~~~a~~~L~ei~~~----~ 206 (607)
+..+.+.-. ..++||.+.+.++..+.+.+-..- +++++.+..++ ..+ ++..+-.++..|..+.+. +
T Consensus 88 l~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p~W--p~~l~~l~~~~-~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~ 163 (971)
T 2x1g_F 88 LESIVRFAG-GPKIVLNRLCISLGAYIVHMLGEW--PGAIEEVINTF-QNQRMPNVSADVQLWIMLEVLTAIPEEAQVIH 163 (971)
T ss_dssp HHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTCC--------HHHHHH-HHTC----CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHHHHHccccc--cHHHHHHHHHH-hccccccCCCHHHHHHHHHHHHHhHHHHhccC
Confidence 555544332 358999999999999988752222 45666666664 332 455666666666655431 1
Q ss_pred cccchhhhhhH-hhhcch--HHHHHHHhhcCCC----Chh-HHHHHHHHHhcc-----CCCChhHHHHHHHHHHHHhc--
Q 007343 207 ASTSEEASRER-EALISK--PVIYYLLNRIKEF----SEW-AQCLVLELVAKY-----VPLDSNEIFDIMNLLEDRLQ-- 271 (607)
Q Consensus 207 ~~~~~~~~~~~-~~li~~--~~~~~Ll~~l~~~----~~w-~qi~iL~lL~~~-----~~~~~~~~~~il~~l~~~L~-- 271 (607)
+........+. ...+.. +.+..+++..... +.| ....+|+.+..| .|.+ ....+++.+.. |.
T Consensus 164 ~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~ 240 (971)
T 2x1g_F 164 TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHK 240 (971)
T ss_dssp CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhh
Confidence 10000000000 000000 1122222222111 123 566777777653 2332 23345565554 41
Q ss_pred --------------cCchHHHHHHHHHHHhhcCC-c-ch---hHHHHHHHHHHHHHHH---hccCCc---hhHHHHHHHH
Q 007343 272 --------------HANGAVVLSTIKVFLHLTLS-M-TD---VHQQVYERIKAPLLTL---VSSGSP---EQSYAVLSHL 326 (607)
Q Consensus 272 --------------~~n~aVv~~ai~~i~~l~~~-~-~~---~~~~~~~~l~~~L~~l---l~s~~~---ni~y~~L~~i 326 (607)
..++.+.-.|+.++..+... . .+ .-..++..+......+ +..+|. +......+.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~ 320 (971)
T 2x1g_F 241 CYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLF 320 (971)
T ss_dssp HHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHH
T ss_pred hccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHH
Confidence 13455666677776655431 1 11 1112222222211112 233453 6677777777
Q ss_pred HHHHhhCCcccc-----------cccc----eee-ec-c----CCCHhHHHHHHHHHHHccCC----------CCH----
Q 007343 327 HILVMRAPFIFA-----------SDYK----HFY-CQ-Y----NEPSYVKKLKLEMLTAVANE----------SNT---- 371 (607)
Q Consensus 327 ~~l~~~~p~~~~-----------~~~~----~f~-~~-~----~d~~~Ik~~kL~iL~~l~n~----------~N~---- 371 (607)
..+...++..+. +++. .++ +. . .++..|...+++.++.++.+ ...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~ 400 (971)
T 2x1g_F 321 VSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI 400 (971)
T ss_dssp HHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 777766665443 2221 111 21 1 22334788888887776541 111
Q ss_pred HHHH----HHHHHHhh--cC------C-------HHHHHHHHHHHHHHHcccCCh--HHHHHHHHHhhhhc----Cc-hh
Q 007343 372 YEIV----TELCEYAA--NV------D-------IPIARESIRAVGKIALQQYDV--NAIVDRLLQFLEME----KD-YV 425 (607)
Q Consensus 372 ~~Iv----~eL~~y~~--~~------d-------~~~~~~~i~~I~~la~k~~~~--~~~v~~ll~ll~~~----~~-~v 425 (607)
...+ +.+..-+. +. | .++++.+...+..++..+++. .-.++.+.+.+... .+ ..
T Consensus 401 ~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~ 480 (971)
T 2x1g_F 401 KPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTK 480 (971)
T ss_dssp HHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHH
Confidence 1222 22222221 11 1 135666666777777666631 22333333333320 11 12
Q ss_pred hHHHHHHHHHHHHhCCCCc-hhHHHHHH---hhhhccCCchHHHHHHHHHHhcccCCCCC----hHHHHHHHHHhhhcCC
Q 007343 426 TAEALVLVKDLLRKYPQWS-HDCIAVVG---SISSQNVQEPKAKAALIWMLGEYSQDMQD----APYILESLTENWEEEP 497 (607)
Q Consensus 426 ~~e~i~~i~~i~~~~p~~~-~~~~~~l~---~l~~~~~~~~~~~~~~iwilGEy~~~i~~----~~~~l~~l~~~f~~e~ 497 (607)
.+-.+..+..|.+..++.. .....++. .+.. .-..|.++.+++|.+|.|++.+.. .+.+++.+...+ +
T Consensus 481 ~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~-~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~-- 556 (971)
T 2x1g_F 481 LEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPY-EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N-- 556 (971)
T ss_dssp HHHHHHHHHHTTTC------CHHHHHHHHHHHSCT-TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCc-cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--
Confidence 2333344555544333211 11112222 2211 112788899999999999976543 445666666655 2
Q ss_pred cHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 007343 498 SAEVRLHLLTAVMKCFFKRPPETQKVLGAALA 529 (607)
Q Consensus 498 ~~~vk~~iLta~~Kl~~~~p~~~~~~~~~~l~ 529 (607)
+.|+...-.|+.++.-..+.+..+.+..+++
T Consensus 557 -~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 557 -SSMSAQATLGLKELCRDCQLQLKPYADPLLN 587 (971)
T ss_dssp -SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 4577777888888875454444444444433
No 72
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00035 Score=69.02 Aligned_cols=137 Identities=14% Similarity=0.070 Sum_probs=108.0
Q ss_pred hhhccCCCchhHHHHHHHHHh-hccCCChHH------HHHHHHHHHHc-CCCCHHHHHHHHHHhhcCCh-------H-hh
Q 007343 69 VMCSATSDIVLKKMCYLYVGN-YAKVNPDLA------LLTINFLQRDC-KDEDPMIRGLALRSLCSLRV-------A-NL 132 (607)
Q Consensus 69 i~l~~s~~~~~Krl~YL~l~~-~~~~~~el~------~L~iNtl~kDl-~~~n~~ir~lALr~l~~i~~-------~-e~ 132 (607)
-..++|++-..|+-++..+.. +.+.++++. .-++..+.+-+ +|+|+.+|..|+++++.+.. . ..
T Consensus 22 ~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 22 QERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 345689999999999999999 875544432 24488899999 79999999999999988632 2 56
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC-CCCcC--CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc
Q 007343 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 133 ~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~-p~~~~--~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~ 206 (607)
...++|.+...+.|+.+.||..|..|+-.++... |.... -+.+++.|...| ...++.|...++..+..+....
T Consensus 102 ~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM-KHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHc
Confidence 6778899999999999999999999999998854 43221 125677777874 7889999999999999887654
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.79 E-value=0.0037 Score=72.15 Aligned_cols=218 Identities=13% Similarity=0.085 Sum_probs=148.0
Q ss_pred HHHHHHHHHhcCCCcchhhhhhhh-hccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhh
Q 007343 47 LFKKVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLC 125 (607)
Q Consensus 47 ~l~kli~~~~~G~d~s~lf~~vi~-l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~ 125 (607)
..---+++.+.|---....-.++. +..+.+-..+|..=+.+..+.-.+++.+-.++..+.. +.||++|..|.-++|
T Consensus 491 ~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~---~~dp~vRygaa~alg 567 (963)
T 4ady_A 491 AAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA---SDESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 333455566666543333344444 3345566788888888887777788877777777765 589999999988886
Q ss_pred ----cCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHH
Q 007343 126 ----SLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQE 201 (607)
Q Consensus 126 ----~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~e 201 (607)
..+.+..++.+.. .+.+|.+.+||+.|++++..+.-..|+ .++.+.+.|..+.|+.|+.+|..+|..
T Consensus 568 lAyaGTGn~~aIq~LL~---~~~~d~~d~VRraAViaLGlI~~g~~e------~v~rlv~~L~~~~d~~VR~gAalALGl 638 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLH---VAVSDSNDDVRRAAVIALGFVLLRDYT------TVPRIVQLLSKSHNAHVRCGTAFALGI 638 (963)
T ss_dssp HHTTTSCCHHHHHHHHH---HHHHCSCHHHHHHHHHHHHHHTSSSCS------SHHHHTTTGGGCSCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHH---HhccCCcHHHHHHHHHHHHhhccCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5677776665553 344688999999999999988544443 456666655678999999999999998
Q ss_pred HHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhH----HHHHHHHHHHHhc--cCch
Q 007343 202 IWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLLEDRLQ--HANG 275 (607)
Q Consensus 202 i~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~----~~~il~~l~~~L~--~~n~ 275 (607)
++.-+|. ..++.-|.....+.+++.....+-.|+....++.+. ...++..+..... |.++
T Consensus 639 i~aGn~~--------------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~ 704 (963)
T 4ady_A 639 ACAGKGL--------------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEG 704 (963)
T ss_dssp HTSSSCC--------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCH
T ss_pred hccCCCc--------------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccH
Confidence 8754442 123443334457899998888888888765543322 4456666666664 4567
Q ss_pred HHHHHHHHH--HHhhcC
Q 007343 276 AVVLSTIKV--FLHLTL 290 (607)
Q Consensus 276 aVv~~ai~~--i~~l~~ 290 (607)
.+.|.++-. +++++.
T Consensus 705 ~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 705 LAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 777776644 566553
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.78 E-value=0.0027 Score=58.61 Aligned_cols=208 Identities=13% Similarity=0.070 Sum_probs=152.5
Q ss_pred HHHHHcCCCCHHHHHHHHHHhhcCC--hHhhHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHH
Q 007343 104 FLQRDCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (607)
Q Consensus 104 tl~kDl~~~n~~ir~lALr~l~~i~--~~e~~~~l~~~i~~~L~-d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~ 180 (607)
.+.+-|.|.=..++..||+.++.+. .|++.+.+..-+.-.++ |..--.-..-+-+++.+.+..|+.+ ...++.+.
T Consensus 36 ~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v--~~vVp~lf 113 (253)
T 2db0_A 36 KLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV--KSMIPVLF 113 (253)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH--HHHHHHHH
T ss_pred HHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH--HhhHHHHH
Confidence 3444455666789999999998873 47777766665555432 3333444556677888888899987 45677776
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHH
Q 007343 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (607)
Q Consensus 181 ~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~ 260 (607)
.-. .=.|+....|.-.+|.+|...+|. .. +.+++.+...+.+.+.-.....|.++...+-..++...
T Consensus 114 any-rigd~kikIn~~yaLeeIaranP~----l~--------~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~ 180 (253)
T 2db0_A 114 ANY-RIGDEKTKINVSYALEEIAKANPM----LM--------ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVN 180 (253)
T ss_dssp HHS-CCCSHHHHHHHHHHHHHHHHHCHH----HH--------HHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHG
T ss_pred HHH-hcCCccceecHHHHHHHHHHhChH----HH--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccC
Confidence 653 557999999999999999988763 11 34677888888889999999999999999888888888
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 007343 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (607)
Q Consensus 261 ~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~ 331 (607)
.+++.+..+|...|..|.-+|+.++.++....+.+...+.+++. =+++++.-+++-+-..+..++.
T Consensus 181 PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~-----e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 181 PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLE-----ELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-----HCCCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHH-----HhcCcHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999998765554333322222 2455666677777777776653
No 75
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.65 E-value=0.0047 Score=72.82 Aligned_cols=255 Identities=12% Similarity=0.166 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHhhccCCChHHH-HHHHHHHHHcC------CCCHHHHHHHHHHhhcCCh---------H------hhHH
Q 007343 77 IVLKKMCYLYVGNYAKVNPDLAL-LTINFLQRDCK------DEDPMIRGLALRSLCSLRV---------A------NLVE 134 (607)
Q Consensus 77 ~~~Krl~YL~l~~~~~~~~el~~-L~iNtl~kDl~------~~n~~ir~lALr~l~~i~~---------~------e~~~ 134 (607)
.+.|+-+.-++..++...++..+ .+.+.+..-++ ++|...|-.|+.++|.+.. . ++.+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 35667777777777666665433 23333333333 5678889899998877621 1 4555
Q ss_pred HHHHHHhhhcCCC---ChHHHHHHHHHHHHHHhhCC-CCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc----
Q 007343 135 YLVGPLGLGLKDN---NSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE---- 206 (607)
Q Consensus 135 ~l~~~i~~~L~d~---~~~VRK~A~lal~kl~~~~p-~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~---- 206 (607)
.+...+...+.|+ +|+||..|+.++.++...-+ +.. ...++.+.+.| .|+++.|..+|..+|..++...
T Consensus 455 ~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l--~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~ 531 (960)
T 1wa5_C 455 FFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL--IELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNT 531 (960)
T ss_dssp HHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH--HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred HHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH--HHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccc
Confidence 5555566666777 99999999999999876432 221 23445555664 7889999999999999987631
Q ss_pred ---cccch-hhhhhHhhhcchHHHHHHHhhcCCC---------ChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhc--
Q 007343 207 ---ASTSE-EASREREALISKPVIYYLLNRIKEF---------SEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ-- 271 (607)
Q Consensus 207 ---~~~~~-~~~~~~~~li~~~~~~~Ll~~l~~~---------~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~-- 271 (607)
+.... ...| ...+++..|+..+... ++.+-.-+-+++..+...-..-...+++.+...+.
T Consensus 532 ~~~~~~~~~~l~p-----~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 532 SPAFIFHKEDISN-----STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM 606 (960)
T ss_dssp SCCBSSCGGGTTT-----THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH
T ss_pred cccccccHHHhhh-----hHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11000 0111 1123455555544432 23222222233333322111123344554444443
Q ss_pred --c-CchH---HHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccc
Q 007343 272 --H-ANGA---VVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK 342 (607)
Q Consensus 272 --~-~n~a---Vv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~ 342 (607)
+ .++. -.++|+..++... .++....+.+.+.+++...++....+..--+++.+..++... .-+.+++.
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~--~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~ 680 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYT--QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIK 680 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTS--CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTG
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHH
Confidence 2 2333 3577777776642 223334455667777777776555555555888888777665 33444443
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.56 E-value=0.008 Score=57.69 Aligned_cols=214 Identities=12% Similarity=0.041 Sum_probs=156.2
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhh
Q 007343 304 KAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAA 383 (607)
Q Consensus 304 ~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~ 383 (607)
...|..|+.++|+.+++-+|..+..++...|+. .++.. ++.+++.+.+-+.
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~-----------------l~~~~------------~e~~Ld~iI~llk 85 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSD-----------------LRMMV------------LERHLDVFINALS 85 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH-----------------HHHHH------------HHHHHHHHHHTCC
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-----------------ccHHH------------HHHHHHHHHHHHh
Confidence 345778899999999999999999998876432 22221 4566777777888
Q ss_pred cCCHHHHHHHHHHHHHHHcccCCh----HHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhHHHHHHhhhhccC
Q 007343 384 NVDIPIARESIRAVGKIALQQYDV----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNV 459 (607)
Q Consensus 384 ~~d~~~~~~~i~~I~~la~k~~~~----~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~~~~l~~l~~~~~ 459 (607)
+.|+-+.-+++++++.+-+..|-. ....+++.+++..+.+-...++...+--+ +--.........+.+++ .-
T Consensus 86 ~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~~~~~~V~~~l~sLl--~S 161 (265)
T 3b2a_A 86 QENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL--QPLEDSKLVRTYINELV--VS 161 (265)
T ss_dssp STTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBSCCCHHHHHHHHHHH--TC
T ss_pred ccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC--CcccchHHHHHHHHHHH--hC
Confidence 899999999999999999888742 35788999999987777777777776655 22232344556677776 33
Q ss_pred CchHHHHHHHHHHhcccCCCCC---hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcC-CchhHHHHHHHHHHhhc--
Q 007343 460 QEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR-PPETQKVLGAALAAGLA-- 533 (607)
Q Consensus 460 ~~~~~~~~~iwilGEy~~~i~~---~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~-p~~~~~~~~~~l~~~~~-- 533 (607)
.+++.+++.+-.+-|-+....+ ..++++.+-+-...++ +.++--.|.++.+++.+- +++..+-+..++....+
T Consensus 162 kd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD-~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~ 240 (265)
T 3b2a_A 162 PDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDN-EFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLV 240 (265)
T ss_dssp SSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSC-HHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGG
T ss_pred CChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHH
Confidence 5788998888887777665543 5677777777666776 999999999999997542 35666666666665432
Q ss_pred --CCChhHHhHHHHHHHHcc
Q 007343 534 --DFHQDVHDRALFYHRLLQ 551 (607)
Q Consensus 534 --d~~~dvrdRA~~y~~Ll~ 551 (607)
--.|.+|++|+.-..++.
T Consensus 241 ~~~~~~~~~~ka~~v~~~le 260 (265)
T 3b2a_A 241 YREGAPIIRLKAKKVSDLID 260 (265)
T ss_dssp GCSSCHHHHHHHHHHHHHHH
T ss_pred HhcCChhHHHHHHHHHHHHH
Confidence 347999999987665553
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.0062 Score=68.85 Aligned_cols=321 Identities=12% Similarity=0.113 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHhhcCCh-----HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC----cCCCCchHHHHHhh
Q 007343 113 DPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT----CIDADFPPTLKHLM 183 (607)
Q Consensus 113 n~~ir~lALr~l~~i~~-----~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~----~~~~~~~~~L~~lL 183 (607)
++.+|.+|+-.|++++. ..-+..+.+.+.+.+.+++...|+-|+-++..+- .+|+. ..++++++.|.+++
T Consensus 307 ~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 307 VEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTMI 385 (778)
T ss_dssp SGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHHH
Confidence 36889999999988753 1234557777888887766556999999988763 34432 23456788888885
Q ss_pred cCC-CChhHHHHHHHHHHHHHhhccccchh-----------------h------------hhh--HhhhcchHHHHHHHh
Q 007343 184 LND-PDPQVVANCLSALQEIWSLEASTSEE-----------------A------------SRE--REALISKPVIYYLLN 231 (607)
Q Consensus 184 l~D-~d~~V~~~a~~~L~ei~~~~~~~~~~-----------------~------------~~~--~~~li~~~~~~~Ll~ 231 (607)
.+ .|..+...++..|..+....+....+ . ..+ ...++....+..|+.
T Consensus 386 -k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~ 464 (778)
T 3opb_A 386 -KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKR 464 (778)
T ss_dssp -TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHH
T ss_pred -hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHH
Confidence 64 67889999999999998755432110 0 000 111222223344444
Q ss_pred hcCCCChhHHHHHHHHHhccCCCChhHHH-----HHHHHHHHHhccCchH---HHHHHHHHHHhhcCCc-chhH---HHH
Q 007343 232 RIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGA---VVLSTIKVFLHLTLSM-TDVH---QQV 299 (607)
Q Consensus 232 ~l~~~~~w~qi~iL~lL~~~~~~~~~~~~-----~il~~l~~~L~~~n~a---Vv~~ai~~i~~l~~~~-~~~~---~~~ 299 (607)
.+...++=.|..+.+.|...... ++... ..+..+..+|.+.+.. +...|+.++..+..+. +... ...
T Consensus 465 Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~ 543 (778)
T 3opb_A 465 EMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSA 543 (778)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCS
T ss_pred HHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcc
Confidence 44455666666666666665422 22221 2344555555554322 5556666665554221 1110 000
Q ss_pred HHHHHHHHHHHhccCCch--------------h-HHHHHHHHHHHHhhCC----c----cccc--cccee-eeccCCCHh
Q 007343 300 YERIKAPLLTLVSSGSPE--------------Q-SYAVLSHLHILVMRAP----F----IFAS--DYKHF-YCQYNEPSY 353 (607)
Q Consensus 300 ~~~l~~~L~~ll~s~~~n--------------i-~y~~L~~i~~l~~~~p----~----~~~~--~~~~f-~~~~~d~~~ 353 (607)
. ...+||+.||.. +++ + +|-||.++.-++.... + ++.. -...+ .+..++...
T Consensus 544 ~-~aI~pLv~LL~~-~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~ 621 (778)
T 3opb_A 544 L-NAIPFLFELLPR-STPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP 621 (778)
T ss_dssp T-THHHHHHHTSCC-SSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHH
T ss_pred c-cchHHHHHHcCC-CCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHH
Confidence 1 234667777752 111 1 6777777766665421 1 2221 11111 122344456
Q ss_pred HHHHHHHHHHHccCCC-CH-HHH-----------HHHHHHHhhcCCHHHHHHHHHHHHHHHcccCCh-------HHHHHH
Q 007343 354 VKKLKLEMLTAVANES-NT-YEI-----------VTELCEYAANVDIPIARESIRAVGKIALQQYDV-------NAIVDR 413 (607)
Q Consensus 354 Ik~~kL~iL~~l~n~~-N~-~~I-----------v~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~-------~~~v~~ 413 (607)
||+.+.+++..|+... .+ ..+ ++-|..++.+.|.+.++.+.-+++.++..+|.. ...++.
T Consensus 622 VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~ 701 (778)
T 3opb_A 622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIEN 701 (778)
T ss_dssp HHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHH
Confidence 7777777766665322 11 111 333455666666666666666666665444421 124556
Q ss_pred HHHhhhh--cCchhhHHHHHHHHHHHH
Q 007343 414 LLQFLEM--EKDYVTAEALVLVKDLLR 438 (607)
Q Consensus 414 ll~ll~~--~~~~v~~e~i~~i~~i~~ 438 (607)
+++++.. ..+.+....+.++.+++.
T Consensus 702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 702 AIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 6666665 445555555556666654
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.48 E-value=0.0035 Score=65.18 Aligned_cols=211 Identities=12% Similarity=0.076 Sum_probs=147.0
Q ss_pred CchhHHHHHHHHHhhccCCChHH--H----HHHHHHHHHcCCCCHHHHHHHHHHhhcCCh---HhhHH-----HHHHHHh
Q 007343 76 DIVLKKMCYLYVGNYAKVNPDLA--L----LTINFLQRDCKDEDPMIRGLALRSLCSLRV---ANLVE-----YLVGPLG 141 (607)
Q Consensus 76 ~~~~Krl~YL~l~~~~~~~~el~--~----L~iNtl~kDl~~~n~~ir~lALr~l~~i~~---~e~~~-----~l~~~i~ 141 (607)
+...++-+--++.++...+++.- + =++..|.+=|.++++.++..|..+|+++.. ++..+ ..+|.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 45677888888888876554322 2 138889999999999999988777777632 23222 2356777
Q ss_pred hh-cCCCChHHHHHHHHHHHHHHhhCC----CCcCCCCchHHHHHhhcCCCCh----hHHHHHHHHHHHHHh---hcccc
Q 007343 142 LG-LKDNNSYVRTVAVIGVLKLYHISA----PTCIDADFPPTLKHLMLNDPDP----QVVANCLSALQEIWS---LEAST 209 (607)
Q Consensus 142 ~~-L~d~~~~VRK~A~lal~kl~~~~p----~~~~~~~~~~~L~~lLl~D~d~----~V~~~a~~~L~ei~~---~~~~~ 209 (607)
++ +.++++.+++.|+-++..+-..++ ..+...+.++.|.++| .+.++ .|+.+|..+|..+.. ..++
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL-~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~- 254 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL-TYRSQTNTLAIIESGGGILRNVSSLIATNED- 254 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHT-TCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHh-ccCCCcccHHHHHHHHHHHHHHHhhccCCHH-
Confidence 75 566789999999999888765332 2222468899999985 65544 488888888888874 2221
Q ss_pred chhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHH-----HHHHHHHHhccCchHHHHHHHHH
Q 007343 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKV 284 (607)
Q Consensus 210 ~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~-----il~~l~~~L~~~n~aVv~~ai~~ 284 (607)
.+..+.....+..|+..+...++-.|......|..+...+++.... .++.+..+|++.+..+...|+.+
T Consensus 255 ------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~a 328 (354)
T 3nmw_A 255 ------HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328 (354)
T ss_dssp ------HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred ------HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 1112233345777888888888889999999999887655554443 35677788888899999999988
Q ss_pred HHhhcCCcch
Q 007343 285 FLHLTLSMTD 294 (607)
Q Consensus 285 i~~l~~~~~~ 294 (607)
+..+....+.
T Consensus 329 L~nL~~~~~~ 338 (354)
T 3nmw_A 329 LRNLMANRPA 338 (354)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHcCCHH
Confidence 8887765443
No 79
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.37 E-value=0.098 Score=61.44 Aligned_cols=171 Identities=12% Similarity=0.073 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCC-----CChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchH
Q 007343 150 YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-----PDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (607)
Q Consensus 150 ~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D-----~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~ 224 (607)
..||.|.-++.-++...++.+. +.+.+.+...+ .. .+...+-+|+.++..+...-+... . ..+ .+
T Consensus 436 ~~R~~~~~~l~~~~~~~~~~~l-~~~~~~l~~~l-~~~~~~~~~w~~~eaal~~l~~iae~~~~~~---~----~~l-~~ 505 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLNDYIL-EILAAMLDEAI-ADLQRHPTHWTKLEACIYSFQSVAEHFGGEE---K----RQI-PR 505 (971)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHH-HHHHHHHHHHH-HHHHHCTTCCHHHHHHHHHHHHTTTC-------------CHH-HH
T ss_pred HHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH-HhccCCCCcHHHHHHHHHHHHHHHhhcChhh---h----HHH-HH
Confidence 4678888888888877764431 23445555553 32 566678888888888865422110 0 001 12
Q ss_pred HHHHHHhhcC--CCChhHHHHHHHHHhccC---CCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHH
Q 007343 225 VIYYLLNRIK--EFSEWAQCLVLELVAKYV---PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQV 299 (607)
Q Consensus 225 ~~~~Ll~~l~--~~~~w~qi~iL~lL~~~~---~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~ 299 (607)
++. ++..+. +.+|..+...+..+++|. ..+++-...+++.+...+ + +.|.-.|+.++..+.......-...
T Consensus 506 l~~-~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~ 581 (971)
T 2x1g_F 506 LMR-VLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPY 581 (971)
T ss_dssp HHH-HHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHH-HHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333 444455 458888888899998875 233444556666666666 2 5566666666665543222111122
Q ss_pred HHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhCC
Q 007343 300 YERIKAPLLTLVSS--GSPEQSYAVLSHLHILVMRAP 334 (607)
Q Consensus 300 ~~~l~~~L~~ll~s--~~~ni~y~~L~~i~~l~~~~p 334 (607)
++.+...|..++++ -+.+.+..+++.+..++...|
T Consensus 582 ~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 582 ADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 34444445556654 256788888999888886544
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.011 Score=59.05 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=118.2
Q ss_pred HhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCC-------CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchh
Q 007343 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID-------ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (607)
Q Consensus 140 i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~-------~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~ 212 (607)
+...|.|++.-.|+.|+..+.+++...|..... ..+...+.+.+ .|+|..|+..|+.++..+...-+.....
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 456789999999999999999999765543211 23456777874 9999999999999998887643211000
Q ss_pred hhhhHhhhcchHHHHHHHhh-cCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhc--
Q 007343 213 ASREREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT-- 289 (607)
Q Consensus 213 ~~~~~~~li~~~~~~~Ll~~-l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~-- 289 (607)
. ......-..++..|+.. +.+..+-.....++.+..+..... ....+++.+.+.+++.||-|+.+|+..+..+.
T Consensus 93 -~-~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 93 -N-AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-SITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp -H-HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred -c-chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 0 00000011245556654 667766666555555544321100 11245678888899999999999988776543
Q ss_pred --CCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHh
Q 007343 290 --LSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (607)
Q Consensus 290 --~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~ 331 (607)
...-+.+ ..+..+...+..+++++++++|-.|.+.+..+-.
T Consensus 170 fg~~~~~~k-~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 170 FGLTNVNVQ-TFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HTTTTCCHH-HHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred hCCCcCCch-hHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 2211121 2344455667788999999999999998877754
No 81
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.04 E-value=0.28 Score=58.23 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcccCCCCC----hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCC
Q 007343 464 AKAALIWMLGEYSQDMQD----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (607)
Q Consensus 464 ~~~~~iwilGEy~~~i~~----~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p 517 (607)
.+..++|++|.|++.... -+.+++.+.+.+.+.+ +.||...-.|+.++.-..+
T Consensus 516 v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~-~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETH-EGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 344689999999976543 3345666666665555 8999999999999876544
No 82
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.83 E-value=0.27 Score=58.11 Aligned_cols=116 Identities=14% Similarity=-0.007 Sum_probs=81.2
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHcCC--CCHHHHHHHHHHhhcCCh-------HhhHHHHHHHHhhhcC-----CCChH
Q 007343 85 LYVGNYAKVNPDLALLTINFLQRDCKD--EDPMIRGLALRSLCSLRV-------ANLVEYLVGPLGLGLK-----DNNSY 150 (607)
Q Consensus 85 L~l~~~~~~~~el~~L~iNtl~kDl~~--~n~~ir~lALr~l~~i~~-------~e~~~~l~~~i~~~L~-----d~~~~ 150 (607)
.+++.+.. +|..-...+.+.+-+.+ ++...|-.|+-++|+|.. ..+++.+++.+..++. |+.+.
T Consensus 438 ~~l~~l~~--~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~ 515 (1023)
T 4hat_C 438 VYLTHLNV--IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAV 515 (1023)
T ss_dssp HHHHHHCH--HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHhccCH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHH
Confidence 44444443 35555667777777664 578888888888888731 2456677777777765 46678
Q ss_pred HHHHHHHHHHHHHh---hCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 151 VRTVAVIGVLKLYH---ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 151 VRK~A~lal~kl~~---~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
||.+++.++.+..+ .+|+.+ +..+..|.+.| .|+++.|..+|..++..+++.
T Consensus 516 v~~t~~~~lGry~~wl~~~~~~L--~~vl~~L~~~l-~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 516 VASDIMYVVGQYPRFLKAHWNFL--RTVILKLFEFM-HETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp HHHHHHHHHHTCHHHHHHCHHHH--HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHH--HHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHH
Confidence 89999999988644 455544 23455555553 788999999999999999864
No 83
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.76 E-value=0.46 Score=50.34 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=101.2
Q ss_pred hhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhc
Q 007343 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL 144 (607)
Q Consensus 65 f~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L 144 (607)
|-.++.... .+...|||+=-++..|++.-|++.--++|++..=+.|.++-||..|++.+..++..+.+.-+...+.++|
T Consensus 31 y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 445555443 4689999999999999999999999999999999999999999999999999988788888999999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 007343 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (607)
Q Consensus 145 ~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~ 204 (607)
+..++--+...=-++..+++.+|... +......+. . ++..|+--++..|.+-..
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i~-~-~~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGT----LGGLFSQIL-Q-GEDIVRERAIKFLSTKLK 163 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHH-H-SCHHHHHHHHHHHHHHGG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHH----HHHHHHHHc-c-cchHHHHHHHHHHHHHHh
Confidence 98887655555555555566666543 222333332 2 456777777777765443
No 84
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.72 E-value=1.7 Score=52.30 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=77.2
Q ss_pred CCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCC-------hHhhHHHHHHHHhhhcC--
Q 007343 75 SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VANLVEYLVGPLGLGLK-- 145 (607)
Q Consensus 75 ~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~-------~~e~~~~l~~~i~~~L~-- 145 (607)
.+-..|+-+.-++..+.+ +|+....+.-.+. -.+.++.+|..|+.++-+.- .++-.+.+-..+...+.
T Consensus 25 ~~~~~r~~Ae~~L~~~~~-~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~ 101 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKE-KCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANG 101 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHh-CchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhh
Confidence 366678888888887643 4554344444443 35668899999887666431 12223333333333221
Q ss_pred -----CCChHHHHHHHHHHHHHHhhC-CCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHh
Q 007343 146 -----DNNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (607)
Q Consensus 146 -----d~~~~VRK~A~lal~kl~~~~-p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~ 204 (607)
+..++||.+.+.++..+.+.+ |+.- +++++.|.+++ +. ++...-.++.+|..+.+
T Consensus 102 ~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W--p~ll~~L~~~~-~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 102 TLNILEEENHIKDALSRIVVEMIKREWPQHW--PDMLIELDTLS-KQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp SCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC--TTHHHHHHHHH-HT-CHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHHhCcccc--hHHHHHHHHHh-cC-CHHHHHHHHHHHHHHHH
Confidence 256999999999999998764 7543 56777777764 33 55556667777777654
No 85
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=96.72 E-value=1.4 Score=51.34 Aligned_cols=139 Identities=11% Similarity=0.069 Sum_probs=89.5
Q ss_pred HHHHHHHHHc----CCCCHHHHHHHHHHhhcCCh------HhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhh---C
Q 007343 100 LTINFLQRDC----KDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI---S 166 (607)
Q Consensus 100 L~iNtl~kDl----~~~n~~ir~lALr~l~~i~~------~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~---~ 166 (607)
.+.+.+..-+ .+++...+-.|+.++|.+.. .+..+.+++.+. .+.+++|.||.+|+.++.++.+. +
T Consensus 445 ~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~ 523 (963)
T 2x19_B 445 NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADH 523 (963)
T ss_dssp HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 3445555555 56788888888988888743 245566666544 44557899999999999987553 3
Q ss_pred CCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcC--CCChhHHHHH
Q 007343 167 APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK--EFSEWAQCLV 244 (607)
Q Consensus 167 p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~--~~~~w~qi~i 244 (607)
|+.+ +..++.+.+.| .| +.|...|..++..+++..+.. ..| .-.+++..|...+. +.+.-.+..+
T Consensus 524 ~~~l--~~vl~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~---l~p-----~~~~il~~l~~~l~~~~~~~~~~~~~ 590 (963)
T 2x19_B 524 PVMI--NSVLPLVLHAL-GN--PELSVSSVSTLKKICRECKYD---LPP-----YAANIVAVSQDVLMKQIHKTSQCMWL 590 (963)
T ss_dssp HHHH--TTTHHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGG---CTT-----THHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHH--HHHHHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHH---HHh-----hHHHHHHHHHHHhccCCCChHHHHHH
Confidence 4444 46777777775 54 889999999999998654321 111 01233444444333 2455677777
Q ss_pred HHHHhccC
Q 007343 245 LELVAKYV 252 (607)
Q Consensus 245 L~lL~~~~ 252 (607)
++.++...
T Consensus 591 ~eai~~i~ 598 (963)
T 2x19_B 591 MQALGFLL 598 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777653
No 86
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.016 Score=57.62 Aligned_cols=164 Identities=11% Similarity=0.097 Sum_probs=108.4
Q ss_pred hHHHHHHHHHHHHHHhcCCC------cchhhhhh----hhhccCCCchhHHHHHHHHHhhccCCC----------hHHHH
Q 007343 41 DDSKRELFKKVISYMTIGID------VSAVFGEM----VMCSATSDIVLKKMCYLYVGNYAKVNP----------DLALL 100 (607)
Q Consensus 41 ~~~k~~~l~kli~~~~~G~d------~s~lf~~v----i~l~~s~~~~~Krl~YL~l~~~~~~~~----------el~~L 100 (607)
=..|++++..+........+ ....|... -+.+..+|...-..+.-++..++..-. -.+-.
T Consensus 23 WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~ 102 (278)
T 4ffb_C 23 WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIST 102 (278)
T ss_dssp HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHH
Confidence 35789999988887764321 11123222 346677888777777666666654211 11223
Q ss_pred HHHHHH-HHcCCCCHHHHHHHHHHhhcCChHh-hHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCC-----
Q 007343 101 TINFLQ-RDCKDEDPMIRGLALRSLCSLRVAN-LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDA----- 173 (607)
Q Consensus 101 ~iNtl~-kDl~~~n~~ir~lALr~l~~i~~~e-~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~----- 173 (607)
+++.+. |-+.|+.+-+|..|+.++..+.... -.+.+.+.+..++.+++|-||-.++..+.++...++-.....
T Consensus 103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~ 182 (278)
T 4ffb_C 103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP 182 (278)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH
Confidence 444444 5589999999999888776543211 124456677889999999999999999999987654322111
Q ss_pred CchHHHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 174 ~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
.+.+.+..+ +.|+|+.|+.+|..++.++.+.
T Consensus 183 ~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 183 ELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHH
Confidence 234456676 4999999999999999998653
No 87
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.49 E-value=0.5 Score=52.14 Aligned_cols=308 Identities=17% Similarity=0.170 Sum_probs=178.6
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCC-CChhHHHHHHHHHHHHHhhcccc
Q 007343 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEAST 209 (607)
Q Consensus 131 e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D-~d~~V~~~a~~~L~ei~~~~~~~ 209 (607)
|.++.+...+.. ..-..=||.|+.++..+-+.+|..+...++ +.|...|.+| .|..++..++-.|..+...+++.
T Consensus 21 etI~~L~~Rl~~---~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l-~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 21 ETIQKLCDRVAS---STLLDDRRNAVRALKSLSKKYRLEVGIQAM-EHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHH---CCSHHHHHHHHHHHHHTTTTTTTHHHHHTH-HHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hHHHHHHHHHhh---ccchhHHHHHHHHHHHHHHHhHHHhhhhhH-HHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 444444444433 345667999999999999999998743334 4444444566 57888888888886665432210
Q ss_pred ch-----hhhhh----H--hhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHH-------HHHHHHHHhc
Q 007343 210 SE-----EASRE----R--EALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-------IMNLLEDRLQ 271 (607)
Q Consensus 210 ~~-----~~~~~----~--~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~-------il~~l~~~L~ 271 (607)
.. +...+ . ..+-.+..+.-|++.+...+.|.....+++|...+...+++.++ -+..+..+|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~ 176 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 176 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHh
Confidence 00 00000 0 01112345677888888899999999999998887666654433 3456777888
Q ss_pred cCchHHHHHHHHHHHhhcCCcchhHHHH-HHHHHHHHHHHhccCCc----hhHHHHHHHHHHHHhhCCc---cccc----
Q 007343 272 HANGAVVLSTIKVFLHLTLSMTDVHQQV-YERIKAPLLTLVSSGSP----EQSYAVLSHLHILVMRAPF---IFAS---- 339 (607)
Q Consensus 272 ~~n~aVv~~ai~~i~~l~~~~~~~~~~~-~~~l~~~L~~ll~s~~~----ni~y~~L~~i~~l~~~~p~---~~~~---- 339 (607)
.....+.-+|+-++..++...++++.-+ ++-+-..|..++.+... .+---.|..+.-+++.+|. +|..
T Consensus 177 d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i 256 (651)
T 3grl_A 177 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYI 256 (651)
T ss_dssp CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCG
T ss_pred CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCH
Confidence 8888999999999999998877654321 22233344555543222 3444455556666666542 2321
Q ss_pred -ccceeeeccCCC-----HhHH--HHHHHHHHHccCCCCHH-------------HHHHHHHHHhhcC--CHHHHHHHHHH
Q 007343 340 -DYKHFYCQYNEP-----SYVK--KLKLEMLTAVANESNTY-------------EIVTELCEYAANV--DIPIARESIRA 396 (607)
Q Consensus 340 -~~~~f~~~~~d~-----~~Ik--~~kL~iL~~l~n~~N~~-------------~Iv~eL~~y~~~~--d~~~~~~~i~~ 396 (607)
.+..++-..++. --++ ...|+++..++.+.|-. .++..|...+... ...++.+++.+
T Consensus 257 ~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~t 336 (651)
T 3grl_A 257 QRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINT 336 (651)
T ss_dssp GGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHH
Confidence 111111111111 0122 24788888888886631 2445566666543 67899999999
Q ss_pred HHHHHcccCCh---------------HHHHHHHHHhhhhcCc-hhhHHHHHHHHHHHHhCCC
Q 007343 397 VGKIALQQYDV---------------NAIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQ 442 (607)
Q Consensus 397 I~~la~k~~~~---------------~~~v~~ll~ll~~~~~-~v~~e~i~~i~~i~~~~p~ 442 (607)
+|.+....+.. .-.+..++.++..... .+.-++...++-.+.++++
T Consensus 337 la~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~ 398 (651)
T 3grl_A 337 VSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK 398 (651)
T ss_dssp HHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH
Confidence 99977654421 1133334444433222 2345555667766666553
No 88
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.34 E-value=0.08 Score=58.43 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=111.0
Q ss_pred HHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCC-----cCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccch
Q 007343 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT-----CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (607)
Q Consensus 137 ~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~-----~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~ 211 (607)
++.+..+|...+.|||-.|+.++..+....|+. +..+.-++.|.++| +|+...++..|+.+|.++.+.++.+-
T Consensus 124 i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL-~d~rE~iRneallLL~~Lt~~n~~iQ- 201 (651)
T 3grl_A 124 VTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL-ADSREVIRNDGVLLLQALTRSNGAIQ- 201 (651)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-GCSSHHHHHHHHHHHHHHHTTCHHHH-
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-hCchHHHHHHHHHHHHHHhcCCHHHH-
Confidence 455677889999999999999999999888772 22467889999984 88888889999999999998776421
Q ss_pred hhhhhHhhhcc-hHHHHHHHhhcCCCC----hhHH---HHHHHHHhccCCCChhHHH--HHHHHHHHHhccC--------
Q 007343 212 EASREREALIS-KPVIYYLLNRIKEFS----EWAQ---CLVLELVAKYVPLDSNEIF--DIMNLLEDRLQHA-------- 273 (607)
Q Consensus 212 ~~~~~~~~li~-~~~~~~Ll~~l~~~~----~w~q---i~iL~lL~~~~~~~~~~~~--~il~~l~~~L~~~-------- 273 (607)
.++. ...|.+|++.+..-. --.. ..+|.-|.++.+.+..... ..+..+.++|...
T Consensus 202 -------klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~ 274 (651)
T 3grl_A 202 -------KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSA 274 (651)
T ss_dssp -------HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCH
T ss_pred -------HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHH
Confidence 1111 124556665542111 1122 2233333334332221111 1233444455321
Q ss_pred ----chHHHHHHHHHHHhhcCCc--chhHHHHH-H-HHHHHHHHHhccC--CchhHHHHHHHHHHHHhhCCc
Q 007343 274 ----NGAVVLSTIKVFLHLTLSM--TDVHQQVY-E-RIKAPLLTLVSSG--SPEQSYAVLSHLHILVMRAPF 335 (607)
Q Consensus 274 ----n~aVv~~ai~~i~~l~~~~--~~~~~~~~-~-~l~~~L~~ll~s~--~~ni~y~~L~~i~~l~~~~p~ 335 (607)
|-.-+++++++++.=+... ..-.+..+ + .+..+|++++.++ +..++-.++..+..++..+|.
T Consensus 275 Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~ 346 (651)
T 3grl_A 275 QKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346 (651)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHH
Confidence 2223566666665422210 11112222 1 2445677776543 567888999999988877654
No 89
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.15 E-value=0.69 Score=54.77 Aligned_cols=89 Identities=15% Similarity=0.136 Sum_probs=52.1
Q ss_pred CchHHHHHHHHHHhcccCCCCCh------HHHHHHHHHhhhc-----CCcHHHHH---HHHHHHHHHhhcCCchhHHHHH
Q 007343 460 QEPKAKAALIWMLGEYSQDMQDA------PYILESLTENWEE-----EPSAEVRL---HLLTAVMKCFFKRPPETQKVLG 525 (607)
Q Consensus 460 ~~~~~~~~~iwilGEy~~~i~~~------~~~l~~l~~~f~~-----e~~~~vk~---~iLta~~Kl~~~~p~~~~~~~~ 525 (607)
.++..+.+++|.+|--++.+... +.++..+.. +.. .+.+.++. +++..+.+++...|+-...++.
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~-l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD-LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH-HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46677899999999776655432 233333332 111 12255664 4455555666666544555566
Q ss_pred HHHHHhhcCCChhHHhHHHHH-HHHc
Q 007343 526 AALAAGLADFHQDVHDRALFY-HRLL 550 (607)
Q Consensus 526 ~~l~~~~~d~~~dvrdRA~~y-~~Ll 550 (607)
.+++ +..+.++.||.+|..- .++.
T Consensus 544 ~ll~-~l~~~~~~V~~~A~~al~~l~ 568 (1049)
T 3m1i_C 544 KLFE-FMHETHEGVQDMACDTFIKIV 568 (1049)
T ss_dssp HHHH-HTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence 6665 3456789999999863 3443
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.97 E-value=0.2 Score=49.43 Aligned_cols=187 Identities=10% Similarity=-0.001 Sum_probs=117.1
Q ss_pred CCCCCCCCCCcHHHHHHHHHhh--------hcCCCCCChHHHHHHHHHHHHHHhcCCC-----cchhhhhhh-hhccCCC
Q 007343 11 PSPSQPSGKGEVSDLKSQLRQL--------AGSRAPGIDDSKRELFKKVISYMTIGID-----VSAVFGEMV-MCSATSD 76 (607)
Q Consensus 11 ~~~~~~~~~~e~~elr~~l~~~--------~~~~~~~~~~~k~~~l~kli~~~~~G~d-----~s~lf~~vi-~l~~s~~ 76 (607)
+-.|.......+..|+..+... ..+ .+...+.+++..+.-......+ ++-+|.-+. ++. ++|
T Consensus 25 ~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs---~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~-d~N 100 (266)
T 2of3_A 25 KWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFH---KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFF-ETN 100 (266)
T ss_dssp CSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTC---SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTT-SCC
T ss_pred cCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcC---CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHh-CCC
Confidence 3455554444555677776643 222 2335566677666665443221 111122222 333 446
Q ss_pred chhHHHHHHHHHhh----ccC----CChHHHHHHHHHHHHcCCCCHHHHHHHHH---HhhcCChHhhHHHHHHHHhhhcC
Q 007343 77 IVLKKMCYLYVGNY----AKV----NPDLALLTINFLQRDCKDEDPMIRGLALR---SLCSLRVANLVEYLVGPLGLGLK 145 (607)
Q Consensus 77 ~~~Krl~YL~l~~~----~~~----~~el~~L~iNtl~kDl~~~n~~ir~lALr---~l~~i~~~e~~~~l~~~i~~~L~ 145 (607)
...=.-|.-++..+ .+. .+..+-..+..+.--+.|+++-+|..+-. .++.+..+. .+.+.+..++.
T Consensus 101 ~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~---~v~~~l~~g~k 177 (266)
T 2of3_A 101 PAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLDALK 177 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHc
Confidence 55433343333333 222 22234566788888899999999987754 444444433 35556667889
Q ss_pred CCChHHHHHHHHHHHHHHhhCCCCcCCCCch---HHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFP---PTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 146 d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~---~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
++|+.+|--++..+..+...+.-.. ...+ +.+-++ ++|+|..|+.+|+.++.++...-+
T Consensus 178 sKN~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 178 SKNARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988765432 3467 888888 599999999999999999876544
No 91
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.96 E-value=0.12 Score=50.13 Aligned_cols=167 Identities=10% Similarity=-0.007 Sum_probs=96.2
Q ss_pred HHHHhhhcCCCCh--HHHHHHHHHHHHHHhhCCC---CcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccch
Q 007343 137 VGPLGLGLKDNNS--YVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (607)
Q Consensus 137 ~~~i~~~L~d~~~--~VRK~A~lal~kl~~~~p~---~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~ 211 (607)
+|.+.+.|.++++ .|+..|+.++..+...+++ .+.+.+.++.|.++| ..+++.|...|+.+|..+...+++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~n-- 86 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDNDN-- 86 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHH--
Confidence 4556677777777 8888888888877655432 233467888888885 7788999999999999887643321
Q ss_pred hhhhhHhhhcchHHHHHHHhhcC-CCChhHHHHHHHHHhccCCCChhHHHHH----HHHHHHHhc---------------
Q 007343 212 EASREREALISKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVPLDSNEIFDI----MNLLEDRLQ--------------- 271 (607)
Q Consensus 212 ~~~~~~~~li~~~~~~~Ll~~l~-~~~~w~qi~iL~lL~~~~~~~~~~~~~i----l~~l~~~L~--------------- 271 (607)
+..+.....+..|++.+. ..++-.|......|..+...+ +-...+ +..+..++.
T Consensus 87 -----k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 87 -----KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITEALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp -----HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred -----HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhccHHHHHHHHhccccCCccccccccc
Confidence 111111123455555554 345556655554444432221 112222 222222221
Q ss_pred -cCchHHHHHHHHHHHhhcCCcchhHHHHHH--HHHHHHHHHhc
Q 007343 272 -HANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVS 312 (607)
Q Consensus 272 -~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~--~l~~~L~~ll~ 312 (607)
+.++.|...|+.++-.+....++.+..+.+ .+.++|+.++.
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHH
Confidence 124578888998988887654444444332 34566666664
No 92
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.94 E-value=0.24 Score=48.67 Aligned_cols=136 Identities=14% Similarity=0.101 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhh----hhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHH
Q 007343 42 DSKRELFKKVISYMTIGIDVSAVFGEM----VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIR 117 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d~s~lf~~v----i~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir 117 (607)
+.|.+.|+++--+.+.+. .+ +++++ +.+...++.++||.+=-|+......+++++.-++.++..=++|++|.+.
T Consensus 30 ~~kl~~L~qa~el~~~~d-p~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~ 107 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSC-AE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHHTTTT-GG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHHccC-Hh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 689999999988887763 33 45544 5566678899999988888777666666655555555555555555555
Q ss_pred HHHHHHhhcCChHhhHHHHHHHHhh-hcCCCC--hHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHH
Q 007343 118 GLALRSLCSLRVANLVEYLVGPLGL-GLKDNN--SYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVAN 194 (607)
Q Consensus 118 ~lALr~l~~i~~~e~~~~l~~~i~~-~L~d~~--~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~ 194 (607)
-.|+.+.++ +++.+.+ ...+++ ..+ ..+--.+ ..+...+..+. ...+.+|..+
T Consensus 108 K~~I~~~~~---------iY~~~l~~i~~~~~~~~~~-~~~W~~m-------------~~lK~~Il~~~-~s~n~gvkl~ 163 (257)
T 3gs3_A 108 KRVIQACGS---------IYKNGLQYLCSLMEPGDSA-EQAWNIL-------------SLIKAQILDMI-DNENDGIRTN 163 (257)
T ss_dssp HHHHHHHHH---------HHHHHHHHHTTSSSCCHHH-HHHHHHH-------------HHHHHHHHHGG-GSSCHHHHHH
T ss_pred HHHHHHHHH---------HHHHHHHHHhcCCCCcchH-HHHHHHH-------------HHHHHHHHHHH-ccCCcchHHH
Confidence 555555553 1222112 111111 001 0000000 01234455553 6678999999
Q ss_pred HHHHHHHHH
Q 007343 195 CLSALQEIW 203 (607)
Q Consensus 195 a~~~L~ei~ 203 (607)
|+..+..+.
T Consensus 164 ~iKF~e~vI 172 (257)
T 3gs3_A 164 AIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999888875
No 93
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.76 E-value=2.1 Score=50.28 Aligned_cols=123 Identities=11% Similarity=0.087 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhccCCChHHHH----HHH-HHHHHcC---CCCHHHHHHHHHHhhcCChH------------hhHHHHHHH
Q 007343 80 KKMCYLYVGNYAKVNPDLALL----TIN-FLQRDCK---DEDPMIRGLALRSLCSLRVA------------NLVEYLVGP 139 (607)
Q Consensus 80 Krl~YL~l~~~~~~~~el~~L----~iN-tl~kDl~---~~n~~ir~lALr~l~~i~~~------------e~~~~l~~~ 139 (607)
|+++ ...-.++.-.|++.+- .+. .+.+-+. +.+...+-.||.+|+.++.. +..+.+.+.
T Consensus 416 k~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l 494 (980)
T 3ibv_A 416 KKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI 494 (980)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred HHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence 5566 6666666667887666 443 3444442 45678888999997776321 123345555
Q ss_pred HhhhcC-----CCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcC-----CCChhHHHHHHHHHHHHHhhc
Q 007343 140 LGLGLK-----DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN-----DPDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 140 i~~~L~-----d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~-----D~d~~V~~~a~~~L~ei~~~~ 206 (607)
+.+++. +++|.||..++.++.|..+.-.. .+++++.+...+++ ++++.|..+|..++..+++..
T Consensus 495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~---~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 495 LALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY---ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT---CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 555443 88999999999999998765432 23455544444334 678899999999999998754
No 94
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.28 E-value=0.33 Score=47.64 Aligned_cols=131 Identities=20% Similarity=0.198 Sum_probs=93.0
Q ss_pred HHHHHHHHhhc---CChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHH
Q 007343 116 IRGLALRSLCS---LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV 192 (607)
Q Consensus 116 ir~lALr~l~~---i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~ 192 (607)
.+...|+..-. -..|++.+.+.+.+.....|++..|||-.+--+...++..|+.. ...++.|..+ ++|.|+.|+
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~--~~~l~~L~~L-l~d~d~~V~ 107 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL--PHVINVVSML-LRDNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHH-TTCSCHHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HcCCCHHHH
Confidence 56655555444 25688999999999998889999999999999999999998877 5678888887 589999999
Q ss_pred HHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCC-----hhHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 007343 193 ANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS-----EWAQCLVLELVAKYVPLDSNEIFDIMNLLE 267 (607)
Q Consensus 193 ~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~-----~w~qi~iL~lL~~~~~~~~~~~~~il~~l~ 267 (607)
-.++.+...+-+ ..++++++. +..+ -|..+.- +-+.+.
T Consensus 108 K~~I~~~~~iY~-------------------~~l~~i~~~-~~~~~~~~~~W~~m~~-----------------lK~~Il 150 (257)
T 3gs3_A 108 KRVIQACGSIYK-------------------NGLQYLCSL-MEPGDSAEQAWNILSL-----------------IKAQIL 150 (257)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHHTTS-SSCCHHHHHHHHHHHH-----------------HHHHHH
T ss_pred HHHHHHHHHHHH-------------------HHHHHHhcC-CCCcchHHHHHHHHHH-----------------HHHHHH
Confidence 998887776531 135555442 1111 2333222 223444
Q ss_pred HHhccCchHHHHHHHHHHH
Q 007343 268 DRLQHANGAVVLSTIKVFL 286 (607)
Q Consensus 268 ~~L~~~n~aVv~~ai~~i~ 286 (607)
.+..+.|.+|...|+|.+-
T Consensus 151 ~~~~s~n~gvkl~~iKF~e 169 (257)
T 3gs3_A 151 DMIDNENDGIRTNAIKFLE 169 (257)
T ss_dssp HGGGSSCHHHHHHHHHHHH
T ss_pred HHHccCCcchHHHHHHHHH
Confidence 5567788899888887653
No 95
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.16 E-value=0.59 Score=44.99 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=97.4
Q ss_pred HHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhh-hcCCCChHHHHHHHHHHHHHHh-hCCCCcCCCCchHHHH
Q 007343 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGL-GLKDNNSYVRTVAVIGVLKLYH-ISAPTCIDADFPPTLK 180 (607)
Q Consensus 103 Ntl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~-~L~d~~~~VRK~A~lal~kl~~-~~p~~~~~~~~~~~L~ 180 (607)
..++.=.+|+...+|++|...++.. . .. +.+.+.++. .-.|++..||-.++.++..+.. .+|+. .++.+.
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~-~~-~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-----~l~~~~ 145 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S-KD-KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-----ALPIID 145 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T-TS-HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----THHHHH
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c-Cc-HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----HHHHHH
Confidence 3444445677789999999999988 3 33 667788887 7789999999999999999996 88884 456777
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHh-hcCCCChhHHHHHHHHHhccCCCChhHH
Q 007343 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN-RIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (607)
Q Consensus 181 ~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~-~l~~~~~w~qi~iL~lL~~~~~~~~~~~ 259 (607)
.. ..|+|+-|+..|.-..-- +...|. .. .++..+..++. ...+.+.+.|-.|=.-|..|...+|+-+
T Consensus 146 ~W-~~d~n~~VRR~Ase~~rp-W~~~~~--~k--------~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 146 EW-LKSSNLHTRRAATEGLRI-WTNRPY--FK--------ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp HH-HHCSSHHHHHHHHHHTCS-GGGSTT--TT--------TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HH-hcCCCHHHHHHHHHhhHH-Hhccch--hh--------cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 87 489999999887654422 111111 01 11222333444 3457888899888888888888888654
Q ss_pred HH
Q 007343 260 FD 261 (607)
Q Consensus 260 ~~ 261 (607)
..
T Consensus 214 ~~ 215 (240)
T 3l9t_A 214 KI 215 (240)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 96
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.83 E-value=0.26 Score=51.31 Aligned_cols=131 Identities=12% Similarity=0.170 Sum_probs=92.5
Q ss_pred HHHHHHHHhhcC---ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHH
Q 007343 116 IRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV 192 (607)
Q Consensus 116 ir~lALr~l~~i---~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~ 192 (607)
.+...|+.+-.+ ..|++.+.+++.+.....|++..|||-.+--+...+..+++.+ ...++.|..+| .|.|+.|+
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~--~~~l~~L~~LL-~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL--LKLIANLNMLL-RDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHH-TCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-cCCCHHHH
Confidence 355555555443 5577888888888888899999999999999999999988887 56788888874 89999999
Q ss_pred HHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCC-----ChhHHHHHHHHHhccCCCChhHHHHHHHHHH
Q 007343 193 ANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF-----SEWAQCLVLELVAKYVPLDSNEIFDIMNLLE 267 (607)
Q Consensus 193 ~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~-----~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~ 267 (607)
-.++.+...+.+ -.++++++. +.. .-|..+.-+ -+.+.
T Consensus 118 K~~I~~~tslYp-------------------l~f~~i~~~-~~~~~~~e~~W~~m~~l-----------------K~~Il 160 (386)
T 3o2t_A 118 KKAILTMTQLYK-------------------VALQWMVKS-RVISELQEACWDMVSAM-----------------AGDII 160 (386)
T ss_dssp HHHHHHHHHHHH-------------------HHHHHHHHC--CCCHHHHHHHHHHHHH-----------------HHHHH
T ss_pred HHHHHHHHHHHH-------------------HHHHHHhcC-CCcchhHHHHHHHHHHH-----------------HHHHH
Confidence 888887766531 245666553 111 224333322 23444
Q ss_pred HHhccCchHHHHHHHHHHH
Q 007343 268 DRLQHANGAVVLSTIKVFL 286 (607)
Q Consensus 268 ~~L~~~n~aVv~~ai~~i~ 286 (607)
.+..+.|.+|...|+|.+-
T Consensus 161 ~~~ds~n~GVrl~aiKFle 179 (386)
T 3o2t_A 161 LLLDSDNDGIRTHAIKFVE 179 (386)
T ss_dssp HGGGCSSHHHHHHHHHHHH
T ss_pred HHhccCCcchHHHHHHHHH
Confidence 4567788999988888653
No 97
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=94.76 E-value=8.6 Score=45.07 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhc-CCCChHHHHHHHHHHHHHHhh-CCCCcCCCCchHHHHHhhcCCCCh-hHHHHHHHHHHHHHhhcccc
Q 007343 133 VEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDP-QVVANCLSALQEIWSLEAST 209 (607)
Q Consensus 133 ~~~l~~~i~~~L-~d~~~~VRK~A~lal~kl~~~-~p~~~~~~~~~~~L~~lLl~D~d~-~V~~~a~~~L~ei~~~~~~~ 209 (607)
-+.+...+.+.- .+..++||.+.+.++..++.. +|+.- +++++.+..++ +.+++ .+.-..+.+|..|.+.-.+.
T Consensus 87 r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W--p~~i~~l~~~~-~~~~~~~~~~~~LriL~~i~EEv~~~ 163 (980)
T 3ibv_A 87 RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW--NDFFASLQGVI-AASSQSEFSNFYLKVLLSIGDEIADS 163 (980)
T ss_dssp HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC--TTHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC--chHHHHHHHHh-cCCChhHHHHHHHHHHHHhHHHHHhc
Confidence 344444444421 135689999999999999876 57654 56777777764 43333 34444455555333221110
Q ss_pred ----chh-hhhh--Hhhhcch-------HHHHHHHhh-cCCCChhHHHHHHHHHhccCCCCh-hHH--HHHHHHHHHHhc
Q 007343 210 ----SEE-ASRE--REALISK-------PVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDS-NEI--FDIMNLLEDRLQ 271 (607)
Q Consensus 210 ----~~~-~~~~--~~~li~~-------~~~~~Ll~~-l~~~~~w~qi~iL~lL~~~~~~~~-~~~--~~il~~l~~~L~ 271 (607)
..+ ..+. ....+.. +.+..++.. ....++=....+|+.+..|.+.-+ ... ..+++.+...|.
T Consensus 164 ~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~ 243 (980)
T 3ibv_A 164 LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQ 243 (980)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTT
T ss_pred ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcC
Confidence 000 0110 0011100 011122221 112455567889999999876532 211 256666666665
Q ss_pred cCchHHHHHHHHHHHhhc
Q 007343 272 HANGAVVLSTIKVFLHLT 289 (607)
Q Consensus 272 ~~n~aVv~~ai~~i~~l~ 289 (607)
. +.+.-+|+.|+..+.
T Consensus 244 ~--~~~r~~A~ecL~ei~ 259 (980)
T 3ibv_A 244 I--EELRCAACETMTEIV 259 (980)
T ss_dssp S--HHHHHHHHHHHHHHH
T ss_pred C--hHHHHHHHHHHHHHH
Confidence 4 677777888777654
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.53 E-value=1.2 Score=43.01 Aligned_cols=109 Identities=13% Similarity=0.046 Sum_probs=72.0
Q ss_pred chHHHHHhhcCCCCh--hHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccC
Q 007343 175 FPPTLKHLMLNDPDP--QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (607)
Q Consensus 175 ~~~~L~~lLl~D~d~--~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~ 252 (607)
-++.+.++| ..+|+ .+..+|...+..++..++.. +..++....+..|++.|...++-.|......|....
T Consensus 9 ~i~~lV~lL-~s~~~~~~~q~~Aa~~l~~L~~~~~~~-------r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 9 TLERAVSML-EADHMLPSRISAAATFIQHECFQKSEA-------RKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CHHHHHHTC-CSSCCCHHHHHHHHHHHHHHHHHCHHH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHh-CCCCchHHHHHHHHHHHHHHHcCCcHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 467777874 76677 88888888888877554321 111222234677888887888999988888888876
Q ss_pred CCChhHHHH-----HHHHHHHHhcc-CchHHHHHHHHHHHhhcCC
Q 007343 253 PLDSNEIFD-----IMNLLEDRLQH-ANGAVVLSTIKVFLHLTLS 291 (607)
Q Consensus 253 ~~~~~~~~~-----il~~l~~~L~~-~n~aVv~~ai~~i~~l~~~ 291 (607)
..+++-... .++.+..+|++ .+..+.-.|+.++..+...
T Consensus 81 ~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 81 FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 554443332 35566677764 5667777777777777643
No 99
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=94.32 E-value=6.5 Score=41.77 Aligned_cols=333 Identities=9% Similarity=0.063 Sum_probs=167.3
Q ss_pred CchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHH----HHHHHHHh
Q 007343 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQ----CLVLELVA 249 (607)
Q Consensus 174 ~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~q----i~iL~lL~ 249 (607)
.....+..+|...++..++...+.++.++...+| ....... .+ .-++.....+.......++|.. ..++.++.
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~-~~~~~~~-~f-~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK-YGDDTVK-FF-QEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 153 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS-SSHHHHH-HH-HHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc-chHHHHH-HH-hhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 3455566665556778888888899999988765 1111111 10 1112223345554434566655 34444554
Q ss_pred ccCCCChhHHHHHHH--HHHHHhccC-chHHHHHHHHHHHhhcCCcchhHHHHHH---HHHHHH----HHHhccC-----
Q 007343 250 KYVPLDSNEIFDIMN--LLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVYE---RIKAPL----LTLVSSG----- 314 (607)
Q Consensus 250 ~~~~~~~~~~~~il~--~l~~~L~~~-n~aVv~~ai~~i~~l~~~~~~~~~~~~~---~l~~~L----~~ll~s~----- 314 (607)
...+.+.+....+++ .+...|++. +....+-|++++-.+... +..+..+.+ .+.+++ .+.+.++
T Consensus 154 ~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 154 QNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp STTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred ccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 444555555556666 455566553 333344556655433321 112111111 112222 2222111
Q ss_pred --------CchhHHHHHHHHHHHHhhCCccc----ccccc---ee--eeccCCCHhHHHHHHHHHHHccCCC--CHHHHH
Q 007343 315 --------SPEQSYAVLSHLHILVMRAPFIF----ASDYK---HF--YCQYNEPSYVKKLKLEMLTAVANES--NTYEIV 375 (607)
Q Consensus 315 --------~~ni~y~~L~~i~~l~~~~p~~~----~~~~~---~f--~~~~~d~~~Ik~~kL~iL~~l~n~~--N~~~Iv 375 (607)
...++|-++-.+=.+ .-.|.+. ..++. .+ .++..--+-|-|..+.+|..+.+.. +-...+
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlL-SF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLL-TFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHH-TTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHH-HcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 123456666544333 2333311 11110 00 0222233456667778888887765 212222
Q ss_pred HH------HHHHh---h---cCCHHHHHHHHHHHHHHHcccCC---hHHH-HHHHHHhhhhcCchhhHHHHHHHHHHHHh
Q 007343 376 TE------LCEYA---A---NVDIPIARESIRAVGKIALQQYD---VNAI-VDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (607)
Q Consensus 376 ~e------L~~y~---~---~~d~~~~~~~i~~I~~la~k~~~---~~~~-v~~ll~ll~~~~~~v~~e~i~~i~~i~~~ 439 (607)
.+ +...+ . =.|+++..++-.--..+.+.+.+ ...| -+..-..|+=+..|-.+..|. .+. ++
T Consensus 312 ~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~--ENa-~k 388 (480)
T 1ho8_A 312 KQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWS--DNI-DE 388 (480)
T ss_dssp HHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHH--HHS-GG
T ss_pred HHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHH--HHH-HH
Confidence 22 11222 1 14777776655444445444332 2223 233334444444565555553 122 23
Q ss_pred CCCCchhHHHHHHhhhhcc--------CCchHHHHHHHHHHhcccCCCCChHHHHHHH------HHhhhcCCcHHHHHHH
Q 007343 440 YPQWSHDCIAVVGSISSQN--------VQEPKAKAALIWMLGEYSQDMQDAPYILESL------TENWEEEPSAEVRLHL 505 (607)
Q Consensus 440 ~p~~~~~~~~~l~~l~~~~--------~~~~~~~~~~iwilGEy~~~i~~~~~~l~~l------~~~f~~e~~~~vk~~i 505 (607)
..+-.-..+..+.+++... -.+|...+.++.=+|||..+.|+...+++.+ .+-...++ ++||.+.
T Consensus 389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~~A 467 (480)
T 1ho8_A 389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKYEA 467 (480)
T ss_dssp GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHHHH
T ss_pred HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHHHH
Confidence 3332223445555555211 2478889999999999999999988777655 22333344 9999999
Q ss_pred HHHHHHHhhc
Q 007343 506 LTAVMKCFFK 515 (607)
Q Consensus 506 Lta~~Kl~~~ 515 (607)
|.|+-|+..+
T Consensus 468 L~avQklm~~ 477 (480)
T 1ho8_A 468 LKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998653
No 100
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.13 E-value=2.7 Score=43.55 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhcCCC---cchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHH
Q 007343 42 DSKRELFKKVISYMTIGID---VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRG 118 (607)
Q Consensus 42 ~~k~~~l~kli~~~~~G~d---~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~ 118 (607)
+.|.+.|+++==+... .| .+.+|++++.+...++.++||.|=-|+...+..+.|++.-++.++..=+.|+++.+.-
T Consensus 40 ~~Kl~~L~q~~EL~l~-~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K 118 (386)
T 3o2t_A 40 DSKITVLKQVQELIIN-KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVK 118 (386)
T ss_dssp THHHHHHHHHHHHHHT-TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4699999888766554 33 3446777788888899999999988887666555555444444444444444444444
Q ss_pred HHHHHhhc
Q 007343 119 LALRSLCS 126 (607)
Q Consensus 119 lALr~l~~ 126 (607)
.|+.+.++
T Consensus 119 ~~I~~~ts 126 (386)
T 3o2t_A 119 KAILTMTQ 126 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.72 E-value=0.27 Score=47.36 Aligned_cols=140 Identities=12% Similarity=0.061 Sum_probs=90.7
Q ss_pred CCcchhhhhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHH-HcCCCCHHHHHHHHHHhhcCCh---HhhHH
Q 007343 59 IDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR-DCKDEDPMIRGLALRSLCSLRV---ANLVE 134 (607)
Q Consensus 59 ~d~s~lf~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~k-Dl~~~n~~ir~lALr~l~~i~~---~e~~~ 134 (607)
++....+.-.-.+.+++.++.|-++--.+... ...++ +...++. =..|++--||-.+-.+++.+.. ++
T Consensus 67 ~~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 67 NDGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred CCHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 34554455455677777777776654444444 32222 3444554 3458888888777666665432 22
Q ss_pred HHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCC-CchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 007343 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDA-DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (607)
Q Consensus 135 ~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~-~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~ 208 (607)
.+.+.+..-..|+++.|||.|..++.. +..-|..-.++ ..++.|..+ ..|++..|.-+.-..|.++.+.+|+
T Consensus 139 ~~l~~~~~W~~d~n~~VRR~Ase~~rp-W~~~~~~k~dp~~ll~iL~~L-~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 139 KALPIIDEWLKSSNLHTRRAATEGLRI-WTNRPYFKENPNEAIRRIADL-KEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp TTHHHHHHHHHCSSHHHHHHHHHHTCS-GGGSTTTTTCHHHHHHHHHTT-TTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhhHH-HhccchhhcCHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHhhhCHH
Confidence 244556678899999999999999854 22223322222 246677776 5899999999999999999998764
No 102
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.68 E-value=6.1 Score=46.07 Aligned_cols=293 Identities=14% Similarity=0.148 Sum_probs=179.5
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhc---CCCcchhhhhh-hhhccCCCchhHH-HHHHHHHhhccCCC-
Q 007343 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTI---GIDVSAVFGEM-VMCSATSDIVLKK-MCYLYVGNYAKVNP- 95 (607)
Q Consensus 22 ~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~---G~d~s~lf~~v-i~l~~s~~~~~Kr-l~YL~l~~~~~~~~- 95 (607)
+..+...++.+..+. ...++.+...+...... ..++.+.+.+. .+.+..++-.+.- ++|-.+...+...+
T Consensus 13 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 13 IKVLEELFQKLSVAT----ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHHHTTCC----TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHHHhhccccc----hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCC
Confidence 334444445444322 23456666555554431 12444434444 3455443222222 33444443332221
Q ss_pred -hH-HHHHHHHHHHHcCCCCHHHHHHHHH---HhhcCChHhhHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhhCCCC
Q 007343 96 -DL-ALLTINFLQRDCKDEDPMIRGLALR---SLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPT 169 (607)
Q Consensus 96 -el-~~L~iNtl~kDl~~~n~~ir~lALr---~l~~i~~~e~~~~l~~~i~~~L~d~-~~~VRK~A~lal~kl~~~~p~~ 169 (607)
|- .+-..+.+..-+.|.+..||..|-. ++.....|+-+..+.|.+...+.+. .+-.+-.|+-++.++-...|+.
T Consensus 89 ~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 89 VEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp THHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred cccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH
Confidence 22 2224788889999999999987654 4444466766788999999988655 5788888888888888777776
Q ss_pred cC--CCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHH
Q 007343 170 CI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLEL 247 (607)
Q Consensus 170 ~~--~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~l 247 (607)
+. -++++|.+.+++ -|.-+.|..+|..++..++..-.. .+ + .+.+..|++.+.++++ .-..++.
T Consensus 169 ~~~~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~n---------~d-~-~~~~~~~~~~~~~p~~--~~~~~~~ 234 (986)
T 2iw3_A 169 VALRMPELIPVLSETM-WDTKKEVKAAATAAMTKATETVDN---------KD-I-ERFIPSLIQCIADPTE--VPETVHL 234 (986)
T ss_dssp HHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCCC---------TT-T-GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred HHHhccchhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCCC---------cc-h-hhhHHHHHHHhcChhh--hHHHHHH
Confidence 52 156788899986 899999999999999998864221 11 1 1357888888877766 5556777
Q ss_pred Hhc--cCCC-ChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCC--cchhHHHHHHHHHHHHHHHhc-cCCchhHHH
Q 007343 248 VAK--YVPL-DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS--MTDVHQQVYERIKAPLLTLVS-SGSPEQSYA 321 (607)
Q Consensus 248 L~~--~~~~-~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~--~~~~~~~~~~~l~~~L~~ll~-s~~~ni~y~ 321 (607)
|+. |... +.....-+.+.+..-|.....++-..++-++-++..- .+......+.++.+-|.+... -++||.|-+
T Consensus 235 l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~ 314 (986)
T 2iw3_A 235 LGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREV 314 (986)
T ss_dssp HTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHH
T ss_pred hhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHH
Confidence 764 3322 2222333456666667777788877777666555432 222222334444444444332 479999999
Q ss_pred HHHHHHHHHhh
Q 007343 322 VLSHLHILVMR 332 (607)
Q Consensus 322 ~L~~i~~l~~~ 332 (607)
+-+++..+...
T Consensus 315 ~~~a~~~l~~~ 325 (986)
T 2iw3_A 315 TLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999888654
No 103
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.63 E-value=0.2 Score=59.49 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=86.2
Q ss_pred CchhHHHHHHHHHhhcc--------CCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhh---c
Q 007343 76 DIVLKKMCYLYVGNYAK--------VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG---L 144 (607)
Q Consensus 76 ~~~~Krl~YL~l~~~~~--------~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~---L 144 (607)
+..+++.++|++..+.+ +.++..--..+.+.+.+...+...+-++|++|||++.|+.++.+.+.+... -
T Consensus 408 ~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~ 487 (1056)
T 1lsh_A 408 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSL 487 (1056)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCC
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCccccc
Confidence 34466677777755443 234555667788888888888999999999999999999888766554321 1
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhh-cCCCChhHHHHHHHHHHHH
Q 007343 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM-LNDPDPQVVANCLSALQEI 202 (607)
Q Consensus 145 ~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lL-l~D~d~~V~~~a~~~L~ei 202 (607)
.+....||..|+.|+-++-...|+.+ .+.+.++. ..+.++.|+.+|+.+|.+.
T Consensus 488 ~~~~~rvr~aAi~ALr~~~~~~p~~v-----~~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 488 DEYSTRVQAEAIMALRNIAKRDPRKV-----QEIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp CCSCHHHHHHHHHTTTTGGGTCHHHH-----HHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHhhhhchHHH-----HHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 12245799999999988876666544 34455543 2467899999999888764
No 104
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.70 E-value=1.6 Score=42.93 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=99.6
Q ss_pred hhhhhhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHH----HcCCCCHHHHHHHHHHhhcCC----------hHh
Q 007343 66 GEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR----DCKDEDPMIRGLALRSLCSLR----------VAN 131 (607)
Q Consensus 66 ~~vi~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~k----Dl~~~n~~ir~lALr~l~~i~----------~~e 131 (607)
.++...+-++|+...--|.=.+......+++.++-.+.-+.+ -+.|+|+.+-..+|..+..+- .+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 355666667788777667777777777788765544444444 334889999998888888751 222
Q ss_pred hHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhc
Q 007343 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 132 ~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~ 206 (607)
-+..+.|.+..-+.|+..-||..+--.+..+...+|.. .+.+.+.+.+ ...|.-++..++..+..+.+..
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~-ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDAL-KSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHhc
Confidence 35678899888899999999999888888888777654 3567777775 8889999988888777776543
No 105
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.24 E-value=24 Score=42.25 Aligned_cols=92 Identities=12% Similarity=0.009 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHhhcCChH-hhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcC---CCCchHHHHHhhcCC--
Q 007343 113 DPMIRGLALRSLCSLRVA-NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI---DADFPPTLKHLMLND-- 186 (607)
Q Consensus 113 n~~ir~lALr~l~~i~~~-e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~---~~~~~~~L~~lLl~D-- 186 (607)
++..|..|-..|-.+... +....+...+. -.+.+++||--|+..+-+..+.+=..+. ...+.+.+.+.+...
T Consensus 26 ~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~--~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~ 103 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEKCPICVPCGLRLA--EKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTL 103 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHT--STTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSC
T ss_pred ChHHHHHHHHHHHHHHhCchHHHHHHHHHH--ccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhcc
Confidence 777899998888776443 34444433332 2566899999999998887654211121 012333444443222
Q ss_pred ----CChhHHHHHHHHHHHHHhhc
Q 007343 187 ----PDPQVVANCLSALQEIWSLE 206 (607)
Q Consensus 187 ----~d~~V~~~a~~~L~ei~~~~ 206 (607)
..+.|+..+..++..|.+.+
T Consensus 104 ~~~~~~~~vr~kla~~la~Ia~~d 127 (1204)
T 3a6p_A 104 NILEEENHIKDALSRIVVEMIKRE 127 (1204)
T ss_dssp CTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHh
Confidence 45777777788888888764
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.51 E-value=0.47 Score=50.28 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHhhcC--ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCCh
Q 007343 112 EDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP 189 (607)
Q Consensus 112 ~n~~ir~lALr~l~~i--~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~ 189 (607)
.++-..-||-..++.. .-|++.+..+.....+..|.+.-||+.|+-++..+++- +.+ ....+.|.++| .-.++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i--~kiaDvL~QlL-qtdd~ 114 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL--PRVADILTQLL-QTDDS 114 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH--HHHHHHHHHHT-TCCCH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh--hhHHHHHHHHH-hccch
Confidence 3566666777776665 45888888999999999999999999999999888864 444 45677888875 66677
Q ss_pred hHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhc
Q 007343 190 QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (607)
Q Consensus 190 ~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~ 250 (607)
.-+...-.+|.++.+.+|. ..+..|++++...+|-...++|++|..
T Consensus 115 ~E~~~V~~sL~sllk~Dpk---------------~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDAK---------------GTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHHHHHHHHHHHHHHHCHH---------------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcChH---------------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 7777777788888876652 123444444444578888888888864
No 107
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=89.82 E-value=36 Score=39.95 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHHhcccCCCCC------hHHHHHHHHHhhhc----CCcHHHH---HHHHHHHHHHhhcCCchhHHHHHH
Q 007343 460 QEPKAKAALIWMLGEYSQDMQD------APYILESLTENWEE----EPSAEVR---LHLLTAVMKCFFKRPPETQKVLGA 526 (607)
Q Consensus 460 ~~~~~~~~~iwilGEy~~~i~~------~~~~l~~l~~~f~~----e~~~~vk---~~iLta~~Kl~~~~p~~~~~~~~~ 526 (607)
.+...+.|++|.+|--.+-... .+.++..+.+-... ++...|+ ++.+....+.+..+|+-.++++..
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~ 544 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILK 544 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4577788899999987765542 23455555543221 1113344 234445555555555444555555
Q ss_pred HHHHhhcCCChhHHhHHHHH
Q 007343 527 ALAAGLADFHQDVHDRALFY 546 (607)
Q Consensus 527 ~l~~~~~d~~~dvrdRA~~y 546 (607)
+++.. .+.++.|++-|+.-
T Consensus 545 L~~~l-~~~~~~v~~~A~~a 563 (1023)
T 4hat_C 545 LFEFM-HETHEGVQDMACDT 563 (1023)
T ss_dssp HHHHT-TCSCHHHHHHHHHH
T ss_pred HHHHh-hcCCHHHHHHHHHH
Confidence 55432 45678899888753
No 108
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=89.59 E-value=38 Score=39.92 Aligned_cols=118 Identities=10% Similarity=0.019 Sum_probs=69.7
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHcCCC--CHHHHH---HHHHHh-hcCCh---HhhHHHHHHHHhhhcCCC-----ChH
Q 007343 85 LYVGNYAKVNPDLALLTINFLQRDCKDE--DPMIRG---LALRSL-CSLRV---ANLVEYLVGPLGLGLKDN-----NSY 150 (607)
Q Consensus 85 L~l~~~~~~~~el~~L~iNtl~kDl~~~--n~~ir~---lALr~l-~~i~~---~e~~~~l~~~i~~~L~d~-----~~~ 150 (607)
.|++++.. .+..-.....+++-+.++ +...+- .|+++| |++.. ..+.+.+++.+..+..++ .+-
T Consensus 464 ~~lt~l~~--~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~ 541 (1073)
T 3gjx_A 464 VYLTHLDY--VDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAI 541 (1073)
T ss_dssp HHHHHHCH--HHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred HHHhcCCH--HHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHH
Confidence 34444432 233334455666655543 344444 556666 33332 256777777777766554 345
Q ss_pred HHHHHHHHHHHHH---hhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 151 VRTVAVIGVLKLY---HISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 151 VRK~A~lal~kl~---~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
||......+.+.- +.+|+.+ ...+..|.+.+ .|++++|..+|..++..|++..+
T Consensus 542 vas~i~~vlgrY~~wl~~h~~~L--~~vl~~L~~~m-~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 542 IASNIMYIVGQYPRFLRAHWKFL--KTVVNKLFEFM-HETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHH--HHHHHHHHHHT-TCCSTTHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHhhhHHHHHhCHHHH--HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHHH
Confidence 5555555666642 3355554 23456666664 78999999999999999987643
No 109
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.41 E-value=24 Score=41.60 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=85.5
Q ss_pred ChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhC---CCCcCC---CCchHHHHHhhcCCCChhHHHHHHHHHHH
Q 007343 128 RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS---APTCID---ADFPPTLKHLMLNDPDPQVVANCLSALQE 201 (607)
Q Consensus 128 ~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~---p~~~~~---~~~~~~L~~lLl~D~d~~V~~~a~~~L~e 201 (607)
.++++++.+.+.++.--..++|++|++|++++..+.+.+ ...+.. ..+.+.+.+.+ ...|...+..++.+|..
T Consensus 388 Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~-~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 388 ATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSS-DRAKEEEIVLALKALGN 466 (1056)
T ss_dssp CCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHH-hcCChHHHHHHHHHhhc
Confidence 455677666555443333468999999999998876532 112211 23444455553 55677777777777877
Q ss_pred HHhhccccchhhhhhHhhhcchHHHHHHHhhcCC-----C--ChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhc--c
Q 007343 202 IWSLEASTSEEASREREALISKPVIYYLLNRIKE-----F--SEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ--H 272 (607)
Q Consensus 202 i~~~~~~~~~~~~~~~~~li~~~~~~~Ll~~l~~-----~--~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~--~ 272 (607)
+... ..+..|...+.. . ..-.+...+..|+++....|+. +-+.+.++.. .
T Consensus 467 ~g~p------------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~---v~~il~~i~~n~~ 525 (1056)
T 1lsh_A 467 AGQP------------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK---VQEIVLPIFLNVA 525 (1056)
T ss_dssp HTCG------------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH---HHHHHHHHHHCTT
T ss_pred cCCh------------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH---HHHHHHHHhcCCC
Confidence 6421 124444444432 1 2246667888888887655543 3455666663 3
Q ss_pred CchHHHHHHHHHHHhhcCCc
Q 007343 273 ANGAVVLSTIKVFLHLTLSM 292 (607)
Q Consensus 273 ~n~aVv~~ai~~i~~l~~~~ 292 (607)
..+-|.+.|.-.++...|+.
T Consensus 526 e~~EvRiaA~~~Lm~t~P~~ 545 (1056)
T 1lsh_A 526 IKSELRIRSCIVFFESKPSV 545 (1056)
T ss_dssp SCHHHHHHHHHHHHHTCCCH
T ss_pred CChHHHHHHHHHHHHHCcCH
Confidence 46778888888887765543
No 110
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.82 E-value=17 Score=42.26 Aligned_cols=277 Identities=13% Similarity=0.126 Sum_probs=162.4
Q ss_pred hhHHHHHHHHHhhccC--CChHHHHHHHHHHHHcCCCC-HHHHHHHHHHhhcCC--hHhh---HHHHHHHHhhhcCCCCh
Q 007343 78 VLKKMCYLYVGNYAKV--NPDLALLTINFLQRDCKDED-PMIRGLALRSLCSLR--VANL---VEYLVGPLGLGLKDNNS 149 (607)
Q Consensus 78 ~~Krl~YL~l~~~~~~--~~el~~L~iNtl~kDl~~~n-~~ir~lALr~l~~i~--~~e~---~~~l~~~i~~~L~d~~~ 149 (607)
+.|..++-....+... ...+..-++..+.|.+.+.+ +.--++|+.+|+.-. .+.+ .-.+.|.+..+..|+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~ 109 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDK 109 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCch
Confidence 3355555444444422 22222357788999998874 433335666777332 1222 22346888889999999
Q ss_pred HHHHHHHHHHHHHHhhC-CCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchHHHHH
Q 007343 150 YVRTVAVIGVLKLYHIS-APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYY 228 (607)
Q Consensus 150 ~VRK~A~lal~kl~~~~-p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~~~~~ 228 (607)
-||+.|-.|+..++... |+.+ ..+++.|.+.|.....=....+|+.++..+....|.. .. .--+.++.-
T Consensus 110 ~v~~aa~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~---~~-----~~~~~~~p~ 179 (986)
T 2iw3_A 110 EIQSVASETLISIVNAVNPVAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ---VA-----LRMPELIPV 179 (986)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH---HH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH---HH-----Hhccchhcc
Confidence 99999998888888754 4455 4577777777522334578888999999888654421 11 111335556
Q ss_pred HHhhcCCCChhHHHHHHHHHhccCC-CChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHH
Q 007343 229 LLNRIKEFSEWAQCLVLELVAKYVP-LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPL 307 (607)
Q Consensus 229 Ll~~l~~~~~w~qi~iL~lL~~~~~-~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~~L 307 (607)
+...+.+.-+=.+....+.+..+|. -+..+...+++.+...+.+... +-+|+..+..-+- -..+..-.+.-+.+.|
T Consensus 180 ~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tf-v~~v~~~~l~~~~p~l 256 (986)
T 2iw3_A 180 LSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATTF-VAEVTPATLSIMVPLL 256 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCC-CSCCCHHHHHHHHHHH
T ss_pred hHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCee-EeeecchhHHHHHHHH
Confidence 6666777777677666666665542 1223455567777666665533 7788877665431 1222222344456666
Q ss_pred HHHhccCCchhH---HHHHHHHHHHHhhCCccccccc-------ceeeeccCCC--HhHHHHHHHHHHHccCC
Q 007343 308 LTLVSSGSPEQS---YAVLSHLHILVMRAPFIFASDY-------KHFYCQYNEP--SYVKKLKLEMLTAVANE 368 (607)
Q Consensus 308 ~~ll~s~~~ni~---y~~L~~i~~l~~~~p~~~~~~~-------~~f~~~~~d~--~~Ik~~kL~iL~~l~n~ 368 (607)
.+=|+.++..++ -++.++|.+++ .+|....+.+ +..+-.-.|| ..+-.++++.|.+..+.
T Consensus 257 ~r~l~~~~~~~~r~~~~~~~n~~~lv-~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 257 SRGLNERETGIKRKSAVIIDNMCKLV-EDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHTTC-CCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HhhhccCcchhheeeEEEEcchhhhc-CCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 666766666664 45556666665 3343222222 2222234677 45677888888876443
No 111
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=87.77 E-value=3.4 Score=44.77 Aligned_cols=228 Identities=13% Similarity=0.064 Sum_probs=128.7
Q ss_pred hccCCCchhHHHHHHHHHhhccC-----------CChHHH--HHHHHHHH--HcCCCC--HHHHHHHHHHhhcCC--hHh
Q 007343 71 CSATSDIVLKKMCYLYVGNYAKV-----------NPDLAL--LTINFLQR--DCKDED--PMIRGLALRSLCSLR--VAN 131 (607)
Q Consensus 71 l~~s~~~~~Krl~YL~l~~~~~~-----------~~el~~--L~iNtl~k--Dl~~~n--~~ir~lALr~l~~i~--~~e 131 (607)
-+-+++-+.|.=+-+++..+.+. |.|++. +++=.+-+ |.-+.. .-||--|-.++|.+. .++
T Consensus 182 DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~e 261 (800)
T 3oc3_A 182 NLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIGP 261 (800)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSCS
T ss_pred HhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCChh
Confidence 34466777777777777665432 336543 44444444 444432 356666666666551 112
Q ss_pred hHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCC-CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccc
Q 007343 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID-ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (607)
Q Consensus 132 ~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~-~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~ 210 (607)
.+.+. .+.+.+..+...||--+.+++--+ .+.+.+ ++.++.+... +.|.|-.|++.|..+|..+. .|+..
T Consensus 262 -~~IL~-qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~Ld~Vv~aVL~G-L~D~DDDVRAVAAetLiPIA--~p~~l 332 (800)
T 3oc3_A 262 -NDIIE-QLVGFLDSGDWQVQFSGLIALGYL----KEFVEDKDGLCRKLVSL-LSSPDEDIKLLSAELLCHFP--ITDSL 332 (800)
T ss_dssp -CCHHH-HHTTGGGCSCHHHHHHHHHHHHHT----GGGCCCHHHHHHHHHHH-TTCSSHHHHHHHHHHHTTSC--CSSTH
T ss_pred -HHHHH-HHHhhcCCCCeeehhhhHHHHHHH----HHHHHHHHHHHHHHHhh-cCCcccHHHHHHHHHhhhhc--chhhH
Confidence 22222 222455778899999999998766 233311 3455566666 48999999999999999888 44311
Q ss_pred hhhhhhHhhhcchHHHHHHHhhcCCCChhHHHHHHHHHhccC--CCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhh
Q 007343 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV--PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (607)
Q Consensus 211 ~~~~~~~~~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~~~~--~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l 288 (607)
..+++ .+...+..+.+.+. ....+|++|+.++ |.+......+++.+.|.++|+-++|..++.+++..+
T Consensus 333 -------~~LL~--iLWd~L~~LDDLSA-STgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tf 402 (800)
T 3oc3_A 333 -------DLVLE--KCWKNIESEELISV-SKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNL 402 (800)
T ss_dssp -------HHHHH--HHHHHHHTCCSCCT-THHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTC
T ss_pred -------HHHHH--HHHHHhhhhcccch-hhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Confidence 11111 23333333334333 3455666666532 111111116788899999999999999999998876
Q ss_pred cCCcchhHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Q 007343 289 TLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHL 326 (607)
Q Consensus 289 ~~~~~~~~~~~~~~l~~~L~~ll~s~~~ni~y~~L~~i 326 (607)
.. .+.-.-+ ...+|=..+.+++-.+++.-
T Consensus 403 L~--~~~LRLI-------FQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 403 SE--ESIDFLV-------AEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp CC--HHHHHHH-------HHHHHHCSCHHHHHHHHHHH
T ss_pred Hh--hhHHHHH-------HHHHHhCCcHHHHHHHHHHH
Confidence 51 2111111 12222246677777666654
No 112
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=86.05 E-value=0.67 Score=45.12 Aligned_cols=68 Identities=24% Similarity=0.364 Sum_probs=49.0
Q ss_pred HHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhc
Q 007343 105 LQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML 184 (607)
Q Consensus 105 l~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl 184 (607)
+.+=++|+++.||..|.+.++ + +.+..+++|+++.||..|+..+ .+ +.+..+ +
T Consensus 127 L~~L~~D~d~~VR~~aA~~l~----~-------~~l~~l~~D~d~~VR~~aa~~l------~~---------~ll~~l-l 179 (244)
T 1lrv_A 127 LEQMAADRDYLVRAYVVQRIP----P-------GRLFRFMRDEDRQVRKLVAKRL------PE---------ESLGLM-T 179 (244)
T ss_dssp GGGGTTCSSHHHHHHHHHHSC----G-------GGGGGTTTCSCHHHHHHHHHHS------CG---------GGGGGS-T
T ss_pred HHHHHcCCCHHHHHHHHHhcC----H-------HHHHHHHcCCCHHHHHHHHHcC------CH---------HHHHHH-H
Confidence 444468999999999998542 1 2456788999999999988761 11 223355 5
Q ss_pred CCCChhHHHHHHHHH
Q 007343 185 NDPDPQVVANCLSAL 199 (607)
Q Consensus 185 ~D~d~~V~~~a~~~L 199 (607)
.|+|+.|+.++...+
T Consensus 180 ~D~d~~VR~aaa~~l 194 (244)
T 1lrv_A 180 QDPEPEVRRIVASRL 194 (244)
T ss_dssp TCSSHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHhC
Confidence 899999988888776
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=85.92 E-value=0.61 Score=45.42 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=54.3
Q ss_pred hhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCCh
Q 007343 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNS 149 (607)
Q Consensus 70 ~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~ 149 (607)
.++.+++...++..--.+ + ...+.+-++|+|+.||..|...++. +.+..++.|+++
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~------~~~l~~L~~D~~~~VR~~aA~~L~~-----------~~L~~ll~D~d~ 112 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P------VEALTPLIRDSDEVVRRAVAYRLPR-----------EQLSALMFDEDR 112 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C------GGGGGGGTTCSSHHHHHHHHTTSCS-----------GGGGGTTTCSCH
T ss_pred HHhcCCCHHHHHHHHHhC-------C------HHHHHHHccCcCHHHHHHHHHHCCH-----------HHHHHHHcCCCH
Confidence 345666666666544422 1 2235566678888888888776431 246677788888
Q ss_pred HHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHH
Q 007343 150 YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLS 197 (607)
Q Consensus 150 ~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~ 197 (607)
.||..|+..+ |. +.+..+ ++|+|+.|+.++..
T Consensus 113 ~VR~~aA~~l-------~~--------~~L~~L-~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 113 EVRITVADRL-------PL--------EQLEQM-AADRDYLVRAYVVQ 144 (244)
T ss_dssp HHHHHHHHHS-------CT--------GGGGGG-TTCSSHHHHHHHHH
T ss_pred HHHHHHHHhC-------CH--------HHHHHH-HcCCCHHHHHHHHH
Confidence 8888777642 11 123444 47888888877654
No 114
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=84.65 E-value=4.8 Score=45.18 Aligned_cols=83 Identities=11% Similarity=0.052 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcccCCCCChHHHHHH----HHHhh--hcCCcHHHHHHHHHHHHHHhhcC--C---c---------hhHHH
Q 007343 464 AKAALIWMLGEYSQDMQDAPYILES----LTENW--EEEPSAEVRLHLLTAVMKCFFKR--P---P---------ETQKV 523 (607)
Q Consensus 464 ~~~~~iwilGEy~~~i~~~~~~l~~----l~~~f--~~e~~~~vk~~iLta~~Kl~~~~--p---~---------~~~~~ 523 (607)
.+..++=++|-.+....+ .++.+. +++.. ..++++.+-.+.|.+++=+|.-. | + ..+..
T Consensus 555 lrv~~ig~Lg~LA~~~~~-~~~n~~Ig~fLl~~l~~~~~~~~~v~~EalnaifDIyaD~~~~yD~~Vf~~~~~l~~L~~~ 633 (684)
T 4gmo_A 555 LGVKCIGVVGSLAHDPAP-IEVNREVGVFLVTLLRQSNNVPPAEIVEALNQLFDIYGDEELACDKEVFWKDGFLKHLEEF 633 (684)
T ss_dssp HHHHHHHHHHHHTSTTSC-HHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHSCCTTSHHHHHTTTTTTHHHHHHHH
T ss_pred hhhhHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCccccHHHHHhccHHHHHHHH
Confidence 566778888887765543 222222 22221 11233788888999999998743 2 0 12222
Q ss_pred HHHHHHHhhc-C--CChhHHhHHHHHH
Q 007343 524 LGAALAAGLA-D--FHQDVHDRALFYH 547 (607)
Q Consensus 524 ~~~~l~~~~~-d--~~~dvrdRA~~y~ 547 (607)
+..+=..... | .++|+|.|+-+-+
T Consensus 634 vp~~k~~~K~idK~k~~elr~r~~e~~ 660 (684)
T 4gmo_A 634 LPKMRTLTKGIDKRTQPELRTRADEAL 660 (684)
T ss_dssp HHHHHHHHHTSCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3223233332 3 5899999988744
No 115
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=84.08 E-value=2.3 Score=47.82 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=37.9
Q ss_pred hhcCCCChHHHHHHHHHHHHHHhhCCCC---cCCCCchH-HHHHhhcCCCChhHHHHHHHHHHHHHhh
Q 007343 142 LGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPP-TLKHLMLNDPDPQVVANCLSALQEIWSL 205 (607)
Q Consensus 142 ~~L~d~~~~VRK~A~lal~kl~~~~p~~---~~~~~~~~-~L~~lLl~D~d~~V~~~a~~~L~ei~~~ 205 (607)
+.|++++|.+|..|+.|+..+.. +|+. +...+.+. .+..+ +.|++..|+.+|..+|..++..
T Consensus 41 ~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~l-L~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 41 KDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTET-LTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTT-TTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHH-cCCCCHHHHHHHHHHHHHHHhh
Confidence 33566666677777777666653 3321 11133443 44555 4788888888888888777654
No 116
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=83.42 E-value=15 Score=39.93 Aligned_cols=131 Identities=13% Similarity=0.151 Sum_probs=82.6
Q ss_pred hccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCC-h
Q 007343 71 CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNN-S 149 (607)
Q Consensus 71 l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~-~ 149 (607)
....+.-+.+.=|-|.+.-+.+--.+ .--+++.+..-|.|++.-||+.|..++.-+..++-++.+...+=.+|.+-+ -
T Consensus 271 ~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDL 349 (800)
T 3oc3_A 271 FLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELI 349 (800)
T ss_dssp GGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSC
T ss_pred hcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhccc
Confidence 33566677777777766644111111 356788888888888888888888888888655555555555544443321 1
Q ss_pred HHHHHHHHH-HHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 007343 150 YVRTVAVIG-VLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (607)
Q Consensus 150 ~VRK~A~la-l~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~ 203 (607)
..-..++|. +.+++...+....++..+++|..++ ..+-++|+.+++.++..+.
T Consensus 350 SASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFL-RHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 350 SVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCF-TSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp CTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGG-TCSSHHHHHHHHHHTTTCC
T ss_pred chhhHHHHHHHHHHHcCCcccccChHHHHHHHhhh-cCCcHHHHHHHHHHHHHHH
Confidence 222334443 3445555555445567888888884 8888888888887776553
No 117
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=80.65 E-value=32 Score=34.71 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=43.4
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhhcCCcchhHHHHHHHHHH------------HHHHHhc---cCCchhHHHHHHHH
Q 007343 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKA------------PLLTLVS---SGSPEQSYAVLSHL 326 (607)
Q Consensus 262 il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~~~~~~~~~~l~~------------~L~~ll~---s~~~ni~y~~L~~i 326 (607)
++..+..++.+....|+..|.+++..+..+.+.... ++.+... .|+.+|. +.+++++--++-.|
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~-lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAP-LFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccch-HHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 455555666666677777777766554433222111 1111111 3556775 67899998888888
Q ss_pred HHHHhhCC
Q 007343 327 HILVMRAP 334 (607)
Q Consensus 327 ~~l~~~~p 334 (607)
..++...|
T Consensus 282 N~lL~~ap 289 (339)
T 3dad_A 282 NKTLAALP 289 (339)
T ss_dssp HHHHHHCS
T ss_pred HHHHhcCC
Confidence 88887764
No 118
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=75.87 E-value=12 Score=32.67 Aligned_cols=78 Identities=12% Similarity=-0.002 Sum_probs=54.9
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC------------ChHhhHHHHHHHHhhhcCCCCh
Q 007343 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLKDNNS 149 (607)
Q Consensus 82 l~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i------------~~~e~~~~l~~~i~~~L~d~~~ 149 (607)
-+.+-++-..+.+++..--++-+++|-++++||.+.-+||..+-.+ ...++.+.+ .+.+...++
T Consensus 24 ~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el----~~l~~~~~~ 99 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEV----SNVLNKGHP 99 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHH----HHHHHHSCH
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH----HHHhccCCH
Confidence 3445566666667778888999999999999999988888766443 334444444 344445788
Q ss_pred HHHHHHHHHHHHHH
Q 007343 150 YVRTVAVIGVLKLY 163 (607)
Q Consensus 150 ~VRK~A~lal~kl~ 163 (607)
.||++....+..-.
T Consensus 100 ~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 100 KVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998877665543
No 119
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=74.10 E-value=16 Score=34.74 Aligned_cols=89 Identities=10% Similarity=0.079 Sum_probs=59.6
Q ss_pred HHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHh
Q 007343 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRERE 218 (607)
Q Consensus 139 ~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~ 218 (607)
.+.+-..|+++++||.|+.+++..+. ..+. ......+..+ ..|++.-|.-+.--+|.++.+++|+
T Consensus 135 ~l~~W~~s~~~w~rR~ai~~~l~~~~-~~d~---~~~~~~i~~~-~~d~~~yV~kAvgW~Lr~~~k~~p~---------- 199 (232)
T 3jxy_A 135 YIPKWIASDNIWLQRAAILFQLKYKQ-KMDE---ELLFWIIGQL-HSSKEFFIQKAIGWVLREYAKTNPD---------- 199 (232)
T ss_dssp THHHHHHSSCHHHHHHHHHTTTTCGG-GCCH---HHHHHHHHHH-TTCCCHHHHHHHHHHHHHHTTTCHH----------
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHh-CCCH---HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhCHH----------
Confidence 45566788999999999988755432 1121 1234455565 5899999988888889999887653
Q ss_pred hhcchHHHHHHHhhcCCCChhHHHHHHHHHh
Q 007343 219 ALISKPVIYYLLNRIKEFSEWAQCLVLELVA 249 (607)
Q Consensus 219 ~li~~~~~~~Ll~~l~~~~~w~qi~iL~lL~ 249 (607)
.+...+.. ...++|..-+.++-|.
T Consensus 200 ------~v~~fl~~-~~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 200 ------VVWEYVQN-NELAPLSKREAIKHIK 223 (232)
T ss_dssp ------HHHHHHHH-SCCCHHHHHHHTTTTH
T ss_pred ------HHHHHHHH-CCCCHHHHHHHHHhcc
Confidence 12333332 2678888888777654
No 120
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=73.69 E-value=3.6 Score=39.57 Aligned_cols=75 Identities=5% Similarity=-0.051 Sum_probs=54.0
Q ss_pred HHHcCCCCHHHHHHHHH----HhhcCC----hHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCcCCCCchH
Q 007343 106 QRDCKDEDPMIRGLALR----SLCSLR----VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (607)
Q Consensus 106 ~kDl~~~n~~ir~lALr----~l~~i~----~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~ 177 (607)
.+=..|+|+..|-.|+- .++... ...-.+.+...+...+.|+..||||...-++..+++.+|+.+ ..++.
T Consensus 114 ~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~--~~al~ 191 (235)
T 1t06_A 114 DKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLH--EKAVE 191 (235)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGH--HHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHH--HHHHH
Confidence 33446788888888888 556544 234566677777778889999999999999988888888876 34555
Q ss_pred HHHHh
Q 007343 178 TLKHL 182 (607)
Q Consensus 178 ~L~~l 182 (607)
.-+++
T Consensus 192 ~~~~l 196 (235)
T 1t06_A 192 IAKEV 196 (235)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 121
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=72.02 E-value=7 Score=37.07 Aligned_cols=151 Identities=9% Similarity=-0.074 Sum_probs=86.1
Q ss_pred hhhccCCCchhHHHHHHHHHhhccC-CChHHHHHHHHHHHHcCCCC-HHHHHHHHHHhhcCC--hHhhHHHHHHHHhhhc
Q 007343 69 VMCSATSDIVLKKMCYLYVGNYAKV-NPDLALLTINFLQRDCKDED-PMIRGLALRSLCSLR--VANLVEYLVGPLGLGL 144 (607)
Q Consensus 69 i~l~~s~~~~~Krl~YL~l~~~~~~-~~el~~L~iNtl~kDl~~~n-~~ir~lALr~l~~i~--~~e~~~~l~~~i~~~L 144 (607)
-.+..++-++.+-++-+++...... .++- +-.+..+... -.| ..+=++| ++++.+- .++ .+.+.+.+-.
T Consensus 61 ~~L~~s~~~E~r~la~~~l~~~~~~~~~~~-l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~ 133 (220)
T 2b6c_A 61 EAYYQKTEREYQYVAIDLALQNVQRFSLEE-VVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFY 133 (220)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTGGGCCHHH-HHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHT
T ss_pred HHHHcCchhHHHHHHHHHHHHHHhhCCHHH-HHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHH
Confidence 3566777777777777777655432 2222 2222222222 223 3344444 4444431 222 1334466788
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhcchH
Q 007343 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (607)
Q Consensus 145 ~d~~~~VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li~~~ 224 (607)
.|++.++||.|+.+.+.. ....+. ....+.+..+ ..|++-.|.-+.--+|.++.+++|+
T Consensus 134 ~s~~~w~rR~ai~~~l~~-~~~~~~---~~~~~i~~~~-~~d~~~yV~kavgW~Lr~~~k~~~~---------------- 192 (220)
T 2b6c_A 134 GAENFWNRRVALNLQLML-KEKTNQ---DLLKKAIIYD-RTTEEFFIQKAIGWSLRQYSKTNPQ---------------- 192 (220)
T ss_dssp TCSSHHHHHHHHHTTTTC-GGGCCH---HHHHHHHHHT-TTCCCHHHHHHHHHHHHHHTTTCHH----------------
T ss_pred cCCCHHHHHHHHHHHHHH-HHCCCH---HHHHHHHHHh-CCChHHHHHHHHHHHHHHHHhhCHH----------------
Confidence 999999999999987533 221111 1234444445 5899999988888899999987653
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHH
Q 007343 225 VIYYLLNRIKEFSEWAQCLVLELV 248 (607)
Q Consensus 225 ~~~~Ll~~l~~~~~w~qi~iL~lL 248 (607)
.+...++ -...++|..-+.++-+
T Consensus 193 ~v~~fl~-~~~l~~~~~r~Aikkl 215 (220)
T 2b6c_A 193 WVEELMK-ELVLSPLAQREGSKYL 215 (220)
T ss_dssp HHHHHHH-HSCCCHHHHHHHTTTS
T ss_pred HHHHHHh-hccCCHHHHHHHHHhc
Confidence 1222222 2467888777765543
No 122
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=72.01 E-value=19 Score=32.44 Aligned_cols=74 Identities=11% Similarity=0.022 Sum_probs=49.3
Q ss_pred HHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC------------ChHhhHHHHHHHHhhhcCC-CChHHH
Q 007343 86 YVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLKD-NNSYVR 152 (607)
Q Consensus 86 ~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i------------~~~e~~~~l~~~i~~~L~d-~~~~VR 152 (607)
-++-..+.+++..--++-+|+|-++++||.+.-+||..+-.+ ...++.+.+. +++.. .++-||
T Consensus 38 eicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~----~l~~~~~~~~Vk 113 (163)
T 1x5b_A 38 DICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVR----AVIKNKAHPKVC 113 (163)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHH----HHHHTTCCHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH----HHHccCCCHHHH
Confidence 333333445566778889999999999999999998876432 3344444444 33333 578999
Q ss_pred HHHHHHHHHHH
Q 007343 153 TVAVIGVLKLY 163 (607)
Q Consensus 153 K~A~lal~kl~ 163 (607)
+++...+..-.
T Consensus 114 ~kil~li~~W~ 124 (163)
T 1x5b_A 114 EKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99877655443
No 123
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=71.90 E-value=4.3 Score=47.58 Aligned_cols=100 Identities=9% Similarity=0.009 Sum_probs=69.7
Q ss_pred hhhhhhccCCCc-hhHHH-HHHHHHhhcc--CCChHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcC-------ChHhhH
Q 007343 66 GEMVMCSATSDI-VLKKM-CYLYVGNYAK--VNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL-------RVANLV 133 (607)
Q Consensus 66 ~~vi~l~~s~~~-~~Krl-~YL~l~~~~~--~~~el~~L~iNtl~kDl~-~~n~~ir~lALr~l~~i-------~~~e~~ 133 (607)
|.+..+...+|- ++.++ .+..+..++. -.++.+-.+++++..-.+ +++. .|..+|..+-.+ -.++-.
T Consensus 763 P~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~ 841 (997)
T 1vsy_5 763 PFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEK 841 (997)
T ss_dssp TTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHH
T ss_pred HHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 333444555555 66777 5555555533 245666678899988776 6788 999998885332 222333
Q ss_pred HHHHHHHhhhcCCCC-hHHHHHHHHHHHHHHhhC
Q 007343 134 EYLVGPLGLGLKDNN-SYVRTVAVIGVLKLYHIS 166 (607)
Q Consensus 134 ~~l~~~i~~~L~d~~-~~VRK~A~lal~kl~~~~ 166 (607)
+.+...|.++|.|+. ..||..|+.++.-+.+-.
T Consensus 842 ~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 842 NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 567888899999999 999999999998887655
No 124
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=71.44 E-value=99 Score=31.98 Aligned_cols=172 Identities=14% Similarity=0.164 Sum_probs=107.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChH-----HHHHHHHHhhhhcCc-hhhHHHHHHHHHHHHhCC--CCch
Q 007343 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYP--QWSH 445 (607)
Q Consensus 374 Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~-----~~v~~ll~ll~~~~~-~v~~e~i~~i~~i~~~~p--~~~~ 445 (607)
.+..|++-..+.|+.=+..+-..+.++-.|+..-. .+-+.+.+++..... .-..|....+..|+..+. -..+
T Consensus 130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee 209 (403)
T 3fga_B 130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 209 (403)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Confidence 34456666677777666655556666666665421 133555666554332 346788889999998874 3222
Q ss_pred hHHHHHHhhhh--ccCC-chHHHHHHHHHHhcccCCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCC-chh
Q 007343 446 DCIAVVGSISS--QNVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP-PET 520 (607)
Q Consensus 446 ~~~~~l~~l~~--~~~~-~~~~~~~~iwilGEy~~~i~~-~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p-~~~ 520 (607)
.. ..+.+.+. .... -+.--.-+++++..|.+.=+. +..+++.+++.+.... +.=+...|.-+..+.-..+ .+.
T Consensus 210 hk-~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~Ele~iLe~~~~~~f 287 (403)
T 3fga_B 210 HK-IFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEF 287 (403)
T ss_dssp HH-HHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HH-HHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHhCCHHHH
Confidence 22 22333321 1111 122234567777777765444 6789999999999987 7777788888888876554 345
Q ss_pred HHHHHHHH---HHhhcCCChhHHhHHHHHH
Q 007343 521 QKVLGAAL---AAGLADFHQDVHDRALFYH 547 (607)
Q Consensus 521 ~~~~~~~l---~~~~~d~~~dvrdRA~~y~ 547 (607)
+.+...++ ..|..|.+..|=+||..+|
T Consensus 288 ~~i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 288 VKIMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 55555554 4567889999999999988
No 125
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=69.23 E-value=28 Score=31.50 Aligned_cols=98 Identities=8% Similarity=-0.035 Sum_probs=62.2
Q ss_pred hhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC------------ChHhhHHHHH
Q 007343 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLV 137 (607)
Q Consensus 70 ~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i------------~~~e~~~~l~ 137 (607)
++.+....+.---..+-++-..+.+++..--++-+|+|-++++||.+.-+||..+-.+ ...++.+.+.
T Consensus 20 kATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~ 99 (171)
T 1juq_A 20 KATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI 99 (171)
T ss_dssp HHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred HHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence 3444333333334455677777777778888999999999999999999998876543 3344444443
Q ss_pred HHHhhhc--CCCChHHHHHHHHHHHHHHhhCC
Q 007343 138 GPLGLGL--KDNNSYVRTVAVIGVLKLYHISA 167 (607)
Q Consensus 138 ~~i~~~L--~d~~~~VRK~A~lal~kl~~~~p 167 (607)
.-+.... ...++-||++++..+..-....+
T Consensus 100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3322111 12468999998877766544433
No 126
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=68.50 E-value=53 Score=28.92 Aligned_cols=100 Identities=8% Similarity=-0.096 Sum_probs=65.3
Q ss_pred hhhhh-hhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC------------ChHh
Q 007343 65 FGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVAN 131 (607)
Q Consensus 65 f~~vi-~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i------------~~~e 131 (607)
|...| ++.+....+.---+.+-++-..+.+++..--++-+|+|-++++||.+.-+||..+-.+ ...+
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 33333 3443333333344556677777778888889999999999999999999998866543 3344
Q ss_pred hHHHHHHHHhhhcCC------CChHHHHHHHHHHHHHHhhCCC
Q 007343 132 LVEYLVGPLGLGLKD------NNSYVRTVAVIGVLKLYHISAP 168 (607)
Q Consensus 132 ~~~~l~~~i~~~L~d------~~~~VRK~A~lal~kl~~~~p~ 168 (607)
+.+. +.+.+.+ .++-||.+.+..+..-....|+
T Consensus 92 Fl~e----L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 92 FLNE----LIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHH----HHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHH----HHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4444 4455543 4678999887766655544443
No 127
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=67.98 E-value=5.9 Score=37.56 Aligned_cols=67 Identities=9% Similarity=-0.002 Sum_probs=52.6
Q ss_pred HHHHHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 104 FLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 104 tl~kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
.+.+=..|+|+.+|-.|+-+.-.-....-.+.+.+.+...+.|++-||||..+-++--+++.+|+.+
T Consensus 128 ~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 128 IFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp HHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 4566678999999999987554333334456667777779999999999999999999999988865
No 128
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=67.33 E-value=35 Score=32.49 Aligned_cols=69 Identities=4% Similarity=-0.111 Sum_probs=46.1
Q ss_pred HHhhhcCCCChHHHHHHHH----HHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccc
Q 007343 139 PLGLGLKDNNSYVRTVAVI----GVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (607)
Q Consensus 139 ~i~~~L~d~~~~VRK~A~l----al~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~ 208 (607)
.+.+-..|++.++|+.|+. -+..+....++.-....+.+.+... +.|++..|.-+.--+|.++.+++|+
T Consensus 112 ~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~-l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 112 VADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDT-IHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHhhCHH
Confidence 3455667899999999999 4454222222211113455666655 4888899988888889999888764
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.52 E-value=34 Score=32.42 Aligned_cols=79 Identities=16% Similarity=0.169 Sum_probs=55.4
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC------------ChHhhHHHHHHHHhhhcCCCCh
Q 007343 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLKDNNS 149 (607)
Q Consensus 82 l~YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i------------~~~e~~~~l~~~i~~~L~d~~~ 149 (607)
-+.+.++-..+.+++..--++.+|+|-++++||.+.-+||..+-.+ ...++.+.+...+. ...++
T Consensus 27 ~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~---~~~~~ 103 (226)
T 3zyq_A 27 ESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK---RQVEV 103 (226)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH---HCCCH
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc---cCCCH
Confidence 3445556666667777888999999999999999999998877553 45555655544432 24567
Q ss_pred HHHHHHHHHHHHHH
Q 007343 150 YVRTVAVIGVLKLY 163 (607)
Q Consensus 150 ~VRK~A~lal~kl~ 163 (607)
.||++++.-+..-.
T Consensus 104 ~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 104 NVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89988776655443
No 130
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=65.66 E-value=22 Score=41.60 Aligned_cols=119 Identities=11% Similarity=0.063 Sum_probs=80.5
Q ss_pred HhhccCCChHHHHHHHHHHHHcCCCC-HHHHHHHHHHhhcC--Ch-H-hhHHHHHHHHhhhcCC------------CChH
Q 007343 88 GNYAKVNPDLALLTINFLQRDCKDED-PMIRGLALRSLCSL--RV-A-NLVEYLVGPLGLGLKD------------NNSY 150 (607)
Q Consensus 88 ~~~~~~~~el~~L~iNtl~kDl~~~n-~~ir~lALr~l~~i--~~-~-e~~~~l~~~i~~~L~d------------~~~~ 150 (607)
.+++--.++.--.+.+.+.+-|.|++ ..||-.|-.+|+.+ +. + ...+.++...++.+.. ++.-
T Consensus 831 ~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~ 910 (997)
T 1vsy_5 831 AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDI 910 (997)
T ss_dssp HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCH
T ss_pred HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHH
Confidence 44444455554567899999999999 99999999999987 33 2 3344455555554422 1114
Q ss_pred HHHHHHHHHHHHHhhCCCCcCCCCchHHHHHhh---cCCCChhHHHHHHHHHHHHHhhcc
Q 007343 151 VRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM---LNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 151 VRK~A~lal~kl~~~~p~~~~~~~~~~~L~~lL---l~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
.|-.|++|+..+..-.|=.++.|.|+|.+...| .+|+.| |-.++-.++.+..+...
T Consensus 911 ~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~ 969 (997)
T 1vsy_5 911 KIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRA 969 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccc
Confidence 566999999999999999986678997766553 234333 55555667777765443
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=65.37 E-value=28 Score=30.72 Aligned_cols=80 Identities=10% Similarity=-0.058 Sum_probs=53.0
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC---ChHhh-----HHHHHHHHhhhcCC------CCh
Q 007343 84 YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANL-----VEYLVGPLGLGLKD------NNS 149 (607)
Q Consensus 84 YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i---~~~e~-----~~~l~~~i~~~L~d------~~~ 149 (607)
.+-++-..+.+++..--++-+|+|-++++||.+.-+||..+-.+ +.+.+ ...++..+.+.+.+ .++
T Consensus 22 ~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~ 101 (148)
T 1mhq_A 22 IQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATG 101 (148)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCH
Confidence 44555555556777888999999999999999999998876543 11111 12333445555553 477
Q ss_pred HHHHHHHHHHHHHH
Q 007343 150 YVRTVAVIGVLKLY 163 (607)
Q Consensus 150 ~VRK~A~lal~kl~ 163 (607)
-||++++..+..-.
T Consensus 102 ~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 102 KVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89998876655443
No 132
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=64.08 E-value=45 Score=29.40 Aligned_cols=88 Identities=11% Similarity=0.062 Sum_probs=54.7
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHh-hcC
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA-ANV 385 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~-~~~ 385 (607)
|.+-+++++|++++.+|..+..++.+...-|..++.. +.=++-|.++++.. |. ...
T Consensus 53 l~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias------------~~Fl~eL~kl~~~k-----------~~~~~~ 109 (149)
T 3g2s_A 53 LAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK------------FRFLNELIKVVSPK-----------YLGSRT 109 (149)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS------------HHHHHHHHHHHCTT-----------TTGGGS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh------------HHHHHHHHHHHccc-----------ccCCCC
Confidence 4444567899999999999999999987766655421 11122233333221 22 135
Q ss_pred CHHHHHHHHHHHHHHHcccCChHHHHHHHHHh
Q 007343 386 DIPIARESIRAVGKIALQQYDVNAIVDRLLQF 417 (607)
Q Consensus 386 d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~l 417 (607)
+..++.++...|..-+..|++...+.++.-.|
T Consensus 110 ~~~Vk~kil~li~~W~~~f~~~p~i~~~Y~~L 141 (149)
T 3g2s_A 110 SEKVKNKILELLYSWTVGLPEEVKIAEAYQML 141 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 77888888888888887776644444444443
No 133
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=63.66 E-value=42 Score=33.82 Aligned_cols=82 Identities=9% Similarity=0.077 Sum_probs=55.4
Q ss_pred CCCChHHHHHHHHHHHHHHhhCCCCcCC---CCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhccccchhhhhhHhhhc
Q 007343 145 KDNNSYVRTVAVIGVLKLYHISAPTCID---ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI 221 (607)
Q Consensus 145 ~d~~~~VRK~A~lal~kl~~~~p~~~~~---~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~~~~~~~~~~~~~li 221 (607)
.+++.-.+|.|+..+.+++..+++.+.+ .+-+..|.+.. .+.+....+-++.+|.++..+.-+.+ .++
T Consensus 128 ~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q~Y~L~AL~~LM~~v~Gm~--------gvv 198 (339)
T 3dad_A 128 YSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQSYILRALGQLMLFVDGML--------GVV 198 (339)
T ss_dssp HHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHHHHHHHHHHHHTTSHHHHH--------HHH
T ss_pred hcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHHHHHHHHHHHHHhcccccc--------chh
Confidence 3577788999999999999877776521 23355666764 77888999999999999865422210 112
Q ss_pred -chHHHHHHHhhcCC
Q 007343 222 -SKPVIYYLLNRIKE 235 (607)
Q Consensus 222 -~~~~~~~Ll~~l~~ 235 (607)
+.+.+.++...+..
T Consensus 199 s~~~fI~~lyslv~s 213 (339)
T 3dad_A 199 AHSDTIQWLYTLCAS 213 (339)
T ss_dssp HCHHHHHHHHHGGGC
T ss_pred CCHHHHHHHHHHHcC
Confidence 44556666665543
No 134
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=63.31 E-value=10 Score=40.23 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHHcC------CCCHHHHHHHHHHhhcC-----ChHhhHHH--HHHHHhhhcCCCChHHHHHHHHHHH
Q 007343 94 NPDLALLTINFLQRDCK------DEDPMIRGLALRSLCSL-----RVANLVEY--LVGPLGLGLKDNNSYVRTVAVIGVL 160 (607)
Q Consensus 94 ~~el~~L~iNtl~kDl~------~~n~~ir~lALr~l~~i-----~~~e~~~~--l~~~i~~~L~d~~~~VRK~A~lal~ 160 (607)
+-++.-..++-+.++-. +.+|.+-+-|..-+|.+ ....+++. .-..|.+++.|++|.||+.|+.|+.
T Consensus 393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQ 472 (480)
T 1ho8_A 393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQ 472 (480)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34455566666654432 45789999999988876 22334443 3456888999999999999999999
Q ss_pred HHHh
Q 007343 161 KLYH 164 (607)
Q Consensus 161 kl~~ 164 (607)
|+..
T Consensus 473 klm~ 476 (480)
T 1ho8_A 473 AIIG 476 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
No 135
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=61.83 E-value=2.5e+02 Score=33.05 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=54.8
Q ss_pred chHHHHHHHHHHhcccCCCCC------hHHHHHHHHHhhhcCC----cHHHHH---HHHHHHHHHhhcCCchhHHHHHHH
Q 007343 461 EPKAKAALIWMLGEYSQDMQD------APYILESLTENWEEEP----SAEVRL---HLLTAVMKCFFKRPPETQKVLGAA 527 (607)
Q Consensus 461 ~~~~~~~~iwilGEy~~~i~~------~~~~l~~l~~~f~~e~----~~~vk~---~iLta~~Kl~~~~p~~~~~~~~~~ 527 (607)
++....+.+|.+|--+..... -|.+++.+..-..... .+.++. +++.-..+....+|+-.+..+.++
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L 571 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKL 571 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHH
Confidence 466788999999998654432 3566777765443221 022333 244455566666665566677777
Q ss_pred HHHhhcCCChhHHhHHHHHHH
Q 007343 528 LAAGLADFHQDVHDRALFYHR 548 (607)
Q Consensus 528 l~~~~~d~~~dvrdRA~~y~~ 548 (607)
++. ..+.+++||+-|.--..
T Consensus 572 ~~~-m~~~~~~vq~aA~~af~ 591 (1073)
T 3gjx_A 572 FEF-MHETHDGVQDMACDTFI 591 (1073)
T ss_dssp HHH-TTCCSTTHHHHHHHHHH
T ss_pred HHH-HhcCCHHHHHHHHHHHH
Confidence 755 34779999999986543
No 136
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=61.58 E-value=37 Score=29.52 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=46.8
Q ss_pred HHHHHhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcC
Q 007343 306 PLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV 385 (607)
Q Consensus 306 ~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~ 385 (607)
.|.+-+++++|++++.+|..+..++.+...-|..++.. .+.++||..-+...
T Consensus 46 ai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas----------------------------~~Fl~el~~l~~~~ 97 (140)
T 3ldz_A 46 SIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS----------------------------RDFASEVSNVLNKG 97 (140)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS----------------------------HHHHHHHHHHHHHS
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh----------------------------HHHHHHHHHHhccC
Confidence 34455667899999999999999999887666654421 11222222222235
Q ss_pred CHHHHHHHHHHHHHHHcccCC
Q 007343 386 DIPIARESIRAVGKIALQQYD 406 (607)
Q Consensus 386 d~~~~~~~i~~I~~la~k~~~ 406 (607)
++.++.++...|..-+..|++
T Consensus 98 ~~~Vk~kil~li~~W~~~f~~ 118 (140)
T 3ldz_A 98 HPKVCEKLKALMVEWTDEFKN 118 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 677777777777777766654
No 137
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=61.14 E-value=7 Score=37.40 Aligned_cols=64 Identities=6% Similarity=-0.040 Sum_probs=48.8
Q ss_pred HHcCCCCHHHHHHHHHHhhcCChHhhHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhCCCCc
Q 007343 107 RDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (607)
Q Consensus 107 kDl~~~n~~ir~lALr~l~~i~~~e~~~~l~~~i~~~L~d~~~~VRK~A~lal~kl~~~~p~~~ 170 (607)
+=..|+|+.+|-.|+-.+-.-....-.+.+.+.+...+.|++.||||..+-++--+++.+|+.+
T Consensus 138 ~W~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 138 KWIASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp HHHHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 3346789999999986654433333344566667788999999999999999999999988865
No 138
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=60.03 E-value=1.6e+02 Score=30.28 Aligned_cols=174 Identities=15% Similarity=0.191 Sum_probs=106.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChH-----HHHHHHHHhhhhcCc-hhhHHHHHHHHHHHHhCC-CCchh
Q 007343 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYP-QWSHD 446 (607)
Q Consensus 374 Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~-----~~v~~ll~ll~~~~~-~v~~e~i~~i~~i~~~~p-~~~~~ 446 (607)
.+..|++-..+.|+.=+..+-..+.++-.|+.... .+-+.+.+++..... .-..|....+..|++.+. -+.++
T Consensus 175 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKee 254 (392)
T 2jak_A 175 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 254 (392)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 34455566667777666666566666666665521 244666777655433 345788888889998874 12222
Q ss_pred HHHHHHhhhh--ccCC-chHHHHHHHHHHhcccCCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCCc-hhH
Q 007343 447 CIAVVGSISS--QNVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQ 521 (607)
Q Consensus 447 ~~~~l~~l~~--~~~~-~~~~~~~~iwilGEy~~~i~~-~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p~-~~~ 521 (607)
-...+.+.+. .... -+.--.-+++++-.|.+.=+. +..+++.+++.|.... ..=+...|.-+..+.-..++ +.+
T Consensus 255 hk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~eleeiLe~~~~~~f~ 333 (392)
T 2jak_A 255 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFV 333 (392)
T ss_dssp HHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSC-CTTHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHhCCHHHHH
Confidence 1122333321 1111 111233456666666654433 6788999999988876 55566777777777765543 445
Q ss_pred HHHHHH---HHHhhcCCChhHHhHHHHHHH
Q 007343 522 KVLGAA---LAAGLADFHQDVHDRALFYHR 548 (607)
Q Consensus 522 ~~~~~~---l~~~~~d~~~dvrdRA~~y~~ 548 (607)
.+...+ +..|..+.+..|-+||..+|.
T Consensus 334 ~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 334 KIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 554544 456778899999999999984
No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=59.15 E-value=52 Score=30.88 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=51.8
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcC------------ChHhhHHHHHHHHhhhcCCCChHH
Q 007343 84 YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLKDNNSYV 151 (607)
Q Consensus 84 YL~l~~~~~~~~el~~L~iNtl~kDl~~~n~~ir~lALr~l~~i------------~~~e~~~~l~~~i~~~L~d~~~~V 151 (607)
.+.++-..+.+++..--++-+|+|-++++||.+.-+||..+-.+ ...++.+.+...+.+ .+++-|
T Consensus 26 ~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~V 102 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENV 102 (220)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHH
T ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHH
Confidence 34555555566777788899999999999999999998776553 444555555444332 457889
Q ss_pred HHHHHHHHHH
Q 007343 152 RTVAVIGVLK 161 (607)
Q Consensus 152 RK~A~lal~k 161 (607)
|++++.-+..
T Consensus 103 k~kil~li~~ 112 (220)
T 1dvp_A 103 RQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887655443
No 140
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=58.64 E-value=53 Score=28.86 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=27.8
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCccccccc
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~ 341 (607)
|.+-+++++|++++.+|..+..++.+...-|..++
T Consensus 43 i~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~ev 77 (148)
T 1mhq_A 43 LAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEV 77 (148)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 44455678999999999999999999876666544
No 141
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=56.02 E-value=2e+02 Score=30.15 Aligned_cols=187 Identities=14% Similarity=0.176 Sum_probs=114.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChH-----HHHHHHHHhhhhcCc-hhhHHHHHHHHHHHHhCCC-Cchh
Q 007343 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQ-WSHD 446 (607)
Q Consensus 374 Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~-----~~v~~ll~ll~~~~~-~v~~e~i~~i~~i~~~~p~-~~~~ 446 (607)
.+..|++-..+.|+.=+..+-..+.++-.|+.+-. .+-+.+.+++..... .-..|....+..|+..+.- +.+.
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 44456666677777666656566667766775521 234556666654332 3467888888888887641 2222
Q ss_pred HHHHHHhhhh--ccCC-chHHHHHHHHHHhcccCCCCC-hHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHhhcCC-chhH
Q 007343 447 CIAVVGSISS--QNVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP-PETQ 521 (607)
Q Consensus 447 ~~~~l~~l~~--~~~~-~~~~~~~~iwilGEy~~~i~~-~~~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~~~p-~~~~ 521 (607)
-...+.+.+. .... -+.--.-+++++..|.+.-+. +..+++.+++.|.... ..=+...|.-+..+.-..+ .+.+
T Consensus 243 hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~eleeile~~~~~ef~ 321 (449)
T 2npp_B 243 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFV 321 (449)
T ss_dssp HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHhCCHHHHH
Confidence 1122333321 1111 122234466777777665443 6789999999999887 6667778888878775544 3555
Q ss_pred HHHHHH---HHHhhcCCChhHHhHHHHHH------HHccCCHHHHhhhc
Q 007343 522 KVLGAA---LAAGLADFHQDVHDRALFYH------RLLQYNVSVAERVV 561 (607)
Q Consensus 522 ~~~~~~---l~~~~~d~~~dvrdRA~~y~------~Ll~~~~~~~~~i~ 561 (607)
.+...+ +..|..|.+..|=+||..+| .+++.+.+..-.++
T Consensus 322 ~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii 370 (449)
T 2npp_B 322 KIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIM 370 (449)
T ss_dssp HHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhh
Confidence 554444 44677889999999999988 35555554443333
No 142
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=53.56 E-value=62 Score=29.18 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=27.3
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCccccccc
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~ 341 (607)
|.+-++++++++++.+|..+..++.+....|..++
T Consensus 55 l~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~ev 89 (171)
T 1juq_A 55 LAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEV 89 (171)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 44456678999999999999999998766565543
No 143
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=52.41 E-value=77 Score=28.03 Aligned_cols=102 Identities=12% Similarity=0.032 Sum_probs=60.3
Q ss_pred CCCcchhhhhhh-hhccCCCchhHHHHHHHHHhhccCCChHHHHHHHHHHHHcC-CCCHHHHHHHHHHhhcC--------
Q 007343 58 GIDVSAVFGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL-------- 127 (607)
Q Consensus 58 G~d~s~lf~~vi-~l~~s~~~~~Krl~YL~l~~~~~~~~el~~L~iNtl~kDl~-~~n~~ir~lALr~l~~i-------- 127 (607)
|.+.+.-+...| ++.+....+.---+.+-++-..+.+++..--++-+++|-++ ++||.+.-+||..+-.+
T Consensus 10 ~~p~~s~~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~f 89 (157)
T 1elk_A 10 GNPFSSPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRF 89 (157)
T ss_dssp SCGGGSHHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCcHHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHH
Confidence 333332233444 34443333333334456666666677888899999999998 58999888888776532
Q ss_pred ----ChHhhHHHHHHHHhhhc---CCCChHHHHHHHHHHHHH
Q 007343 128 ----RVANLVEYLVGPLGLGL---KDNNSYVRTVAVIGVLKL 162 (607)
Q Consensus 128 ----~~~e~~~~l~~~i~~~L---~d~~~~VRK~A~lal~kl 162 (607)
...++.+.+ +.+.+ .++..-||++++..+..-
T Consensus 90 h~eva~~~fl~e~---Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 90 HVLVASQDFVESV---LVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHTSHHHHHHH---THHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHH---HHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 333444431 23333 234568988877655543
No 144
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=52.26 E-value=1.8e+02 Score=28.62 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=38.5
Q ss_pred HHHHHHcC-CCCHHHHHHHHHHhhcCChHhh--------HHHHHHHHhhhcCCCChHHHHHHHHHHHHH
Q 007343 103 NFLQRDCK-DEDPMIRGLALRSLCSLRVANL--------VEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (607)
Q Consensus 103 Ntl~kDl~-~~n~~ir~lALr~l~~i~~~e~--------~~~l~~~i~~~L~d~~~~VRK~A~lal~kl 162 (607)
+.+..-+. +.+|..+-+++|++||+-.... .+.++..+..++.+++..+|-+++-.++.+
T Consensus 150 ~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~Nl 218 (304)
T 3ebb_A 150 SHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNY 218 (304)
T ss_dssp HHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 34434333 4578889999999999833221 233444566666777888887777666554
No 145
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.81 E-value=96 Score=27.62 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCccccccc
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~ 341 (607)
|.+-|++++|++++.+|..+..++.+....|..++
T Consensus 57 l~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~ev 91 (163)
T 1x5b_A 57 IMKRVNHKVPHVALQALTLLGACVANCGKIFHLEV 91 (163)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44456678999999999999999999876666544
No 146
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=39.17 E-value=1.9e+02 Score=29.08 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=73.9
Q ss_pred HhccCCchhHHHHHHHHHHHHhhCCcccccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcCCHHH
Q 007343 310 LVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPI 389 (607)
Q Consensus 310 ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~d~~~ 389 (607)
++..+.-++.--|+..+..+..+++.+++..+ .+|.+....+...-+.+.+.-.
T Consensus 172 yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL--------------------------~~nyd~Ff~~y~~Ll~S~NYVT 225 (341)
T 1upk_A 172 YVEMSTFDIASDAFATFKDLLTRHKLLSAEFL--------------------------EQHYDRFFSEYEKLLHSENYVT 225 (341)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHH--------------------------HHTHHHHHHHHHHHTTCSSHHH
T ss_pred HhcCCCchHHHHHHHHHHHHHhccHHHHHHHH--------------------------HHhHHHHHHHHHHHhcCCcchh
Confidence 44456666777777777777777655443221 1366666666666666667777
Q ss_pred HHHHHHHHHHHHcccCC---------hHHHHHHHHHhhhhcCchhhHHHHHHHHHHHHhCCCCchhH
Q 007343 390 ARESIRAVGKIALQQYD---------VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDC 447 (607)
Q Consensus 390 ~~~~i~~I~~la~k~~~---------~~~~v~~ll~ll~~~~~~v~~e~i~~i~~i~~~~p~~~~~~ 447 (607)
+|.+++-+|.+-..-++ ....+..++.+|+.....+.-|+..+++ ++..+|..-..+
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFK-vFVANP~K~~~I 291 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFK-VFVANPNKTQPI 291 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHH-HHHHCSSCCHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhhee-eeeeCCCCChHH
Confidence 78888888877643221 1346888999999988888888888887 445578765543
No 147
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.85 E-value=1.8e+02 Score=27.19 Aligned_cols=35 Identities=11% Similarity=0.132 Sum_probs=27.1
Q ss_pred HHHHhccCCchhHHHHHHHHHHHHhhCCccccccc
Q 007343 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (607)
Q Consensus 307 L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~~ 341 (607)
|.+-|++++|++++.+|..+..++++...-|..++
T Consensus 50 l~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~ei 84 (226)
T 3zyq_A 50 IKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEV 84 (226)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhh
Confidence 33445578999999999999999998776565544
No 148
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=32.62 E-value=3.6e+02 Score=26.65 Aligned_cols=29 Identities=14% Similarity=0.291 Sum_probs=20.5
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHhh
Q 007343 484 YILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (607)
Q Consensus 484 ~~l~~l~~~f~~e~~~~vk~~iLta~~Kl~~ 514 (607)
+.|..++..- ... +.+|.=.+..+.++|.
T Consensus 161 ~~L~~ly~~~-~~d-~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 161 VVLQNVYERN-NKD-KQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHT-TTC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccC-CCC-HHHHHHHHHHHHHHcc
Confidence 4555555432 336 8899999999999995
No 149
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.12 E-value=77 Score=27.63 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcccccc----------cceeeecc-----CCC-HhHHHHHHHHHHHc
Q 007343 302 RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASD----------YKHFYCQY-----NEP-SYVKKLKLEMLTAV 365 (607)
Q Consensus 302 ~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~~~~~----------~~~f~~~~-----~d~-~~Ik~~kL~iL~~l 365 (607)
.+...|.+=|++++++++|=+|+.|..++.+.+.-|... ...|-... +|+ .-||.++-|++-.|
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 345556666667889999999999999988766544332 22332211 222 55888888888877
Q ss_pred cCCCC
Q 007343 366 ANESN 370 (607)
Q Consensus 366 ~n~~N 370 (607)
-++++
T Consensus 129 ~d~~~ 133 (140)
T 1vdy_A 129 FSEEN 133 (140)
T ss_dssp TCCSS
T ss_pred hCcCC
Confidence 77654
No 150
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.68 E-value=1.3e+02 Score=26.48 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhCCCCcCCCCchHHHHHhhcCCCChhHHHHHHHHHHHHHhhcc
Q 007343 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (607)
Q Consensus 154 ~A~lal~kl~~~~p~~~~~~~~~~~L~~lLl~D~d~~V~~~a~~~L~ei~~~~~ 207 (607)
...+.+.-+.+..++.. .+.+..|.+.|....|+.|+..|+.+|..+.++.+
T Consensus 35 ~~~leicD~I~~~~~~~--k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG 86 (157)
T 1elk_A 35 ALNMEICDIINETEEGP--KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG 86 (157)
T ss_dssp HHHHHHHHHHHHSSSHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCccH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 44555555555555433 35666777775236899999999999999887654
No 151
>1fyh_A Interferon-gamma; cytokine-receptor complex, fibronectin type-III, immune system; 2.04A {Homo sapiens} SCOP: a.26.1.3 a.26.1.3 PDB: 1eku_A 1fg9_A 3bes_L* 1hig_A
Probab=29.28 E-value=3.8e+02 Score=25.51 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhh-cCchhhHHHHHHHH-HHHHhCCCCchhHHHHHHhhhhccCCchHH----HHHHHHHHhcccCCCCCh
Q 007343 409 AIVDRLLQFLEM-EKDYVTAEALVLVK-DLLRKYPQWSHDCIAVVGSISSQNVQEPKA----KAALIWMLGEYSQDMQDA 482 (607)
Q Consensus 409 ~~v~~ll~ll~~-~~~~v~~e~i~~i~-~i~~~~p~~~~~~~~~l~~l~~~~~~~~~~----~~~~iwilGEy~~~i~~~ 482 (607)
-+|.+.+++++. .+....++.+..|+ +++++.=.-...-..-+.++..-.+.++.+ ..-++|+++.+|.+++..
T Consensus 49 QIVSfY~klfe~lkdn~~iq~si~~ik~~l~~~f~n~s~~K~~df~~l~k~~v~d~~vQrkAi~EL~~VM~~sG~y~q~~ 128 (258)
T 1fyh_A 49 QIVSFYFKLFKNFKDDQSIQKSVETIKEDMNVKFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIDELIQVMAELGANVSGE 128 (258)
T ss_dssp HHHHHHHHHHHTTTTCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHcCcccchh
Confidence 467888888773 34567777777764 444442211111112233443335666665 334589999999988641
Q ss_pred -HHHHHHHHHhhhcCCc----------------------HHHHHHHHHHHHHHhhc
Q 007343 483 -PYILESLTENWEEEPS----------------------AEVRLHLLTAVMKCFFK 515 (607)
Q Consensus 483 -~~~l~~l~~~f~~e~~----------------------~~vk~~iLta~~Kl~~~ 515 (607)
.+-++.+-+.|....+ ..++.+|++...|+|-.
T Consensus 129 ~~keIe~LK~yfNasn~Dv~dggplFl~ilknwkee~dkkIi~SQIvs~Y~KlFe~ 184 (258)
T 1fyh_A 129 FVKEAENLKKYFNAGHSDVADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKN 184 (258)
T ss_dssp HHHHHHHHHHHHC-------CCCCSSHHHHHHCCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCccccCCCcchHHhhhhhhhccchhhHHHHHHHHHHHHHHh
Confidence 2223333333322110 34778899999999874
No 152
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=28.26 E-value=4.6e+02 Score=26.22 Aligned_cols=114 Identities=14% Similarity=0.273 Sum_probs=69.7
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHhhcCCcc--hhHHHHHH---HHHHHHHHHhccCCchhHHHHHHHHHHHHhhCCcc
Q 007343 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT--DVHQQVYE---RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI 336 (607)
Q Consensus 262 il~~l~~~L~~~n~aVv~~ai~~i~~l~~~~~--~~~~~~~~---~l~~~L~~ll~s~~~ni~y~~L~~i~~l~~~~p~~ 336 (607)
+......+|+|.|.-....+++++..+-...+ .+....+. -+ ..+..+|.+++.++||-|...+...+. +|
T Consensus 210 Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nL-kl~M~LL~d~sk~Iq~EAFhVFKvFVA-NP-- 285 (341)
T 1upk_A 210 FFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENL-KLMMNLLRDKSRNIQFEAFHVFKVFVA-NP-- 285 (341)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHH-CS--
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHH-HHHHHHhcCchhchhhhhhhheeeeee-CC--
Confidence 34445568889999999999999887653322 12111111 11 123467778889999988887776664 23
Q ss_pred cccccceeeeccCCCHhHHHHHHHHHHHccCCCCHHHHHHHHHHHhhcC--CHHHHHH---HHHHHHHH
Q 007343 337 FASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV--DIPIARE---SIRAVGKI 400 (607)
Q Consensus 337 ~~~~~~~f~~~~~d~~~Ik~~kL~iL~~l~n~~N~~~Iv~eL~~y~~~~--d~~~~~~---~i~~I~~l 400 (607)
+-|.-|. +||.. |=+.++.=|..+..+. |++|..+ +|+.|..+
T Consensus 286 ------------~K~~~I~----~IL~~-----Nr~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~L 333 (341)
T 1upk_A 286 ------------NKTQPIL----DILLK-----NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333 (341)
T ss_dssp ------------SCCHHHH----HHHHH-----THHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHTC
T ss_pred ------------CCChHHH----HHHHH-----HHHHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHhC
Confidence 2333232 33333 6677777667776654 6778876 66666554
No 153
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=27.70 E-value=8.6e+02 Score=29.15 Aligned_cols=64 Identities=14% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHhccCCCChhHHHHHHHHHHHHhccCchHHHHHHHHHHHhhcCC
Q 007343 225 VIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (607)
Q Consensus 225 ~~~~Ll~~l~~~~~w~qi~iL~lL~~~~~~~~~~~~~il~~l~~~L~~~n~aVv~~ai~~i~~l~~~ 291 (607)
++.+++..+....+|.|-.|+..|-..... .+-..+.+.+..+|+. |++.+..+.-++..+..+
T Consensus 158 l~~ki~~vl~vap~~lQ~diI~sLPeIl~d--s~H~~v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls 221 (1323)
T 3s4w_B 158 LTAQMMQLISVAPVNLQHDFITSLPEILGD--SQHANVGKELGELLVQ-NTSLTVPILDVFSSLRLD 221 (1323)
T ss_dssp HHHHHHHHHHHSCTTTHHHHHHTHHHHSCG--GGHHHHHHHHHHHHHH-CSTTHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHhHHHhcc--hhhHHHHHHHHHHHhc-CcchHHHHHHHHHcCCCC
Confidence 455555555555567777777776665432 2222445555555543 444455555555555443
No 154
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=25.61 E-value=1.8e+02 Score=22.41 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=27.8
Q ss_pred CCCCCCcHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhc
Q 007343 15 QPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTI 57 (607)
Q Consensus 15 ~~~~~~e~~elr~~l~~~~~~~~~~~~~~k~~~l~kli~~~~~ 57 (607)
..-.+-.+.|||++|+.-... ...+|.+.+.+|......
T Consensus 24 ~~l~klkVaeLK~eLk~RGL~----~sG~KaeLIeRL~~~~~~ 62 (75)
T 2kvu_A 24 ANLDDMKVAELKQELKLRSLP----VSGTKTELIERLRAYQDQ 62 (75)
T ss_dssp TTTTTSCHHHHHHHHHHTTCC----CCSCHHHHHHHHHHHHHT
T ss_pred HHHHHCcHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHHHc
Confidence 345577899999999974332 224688999998877644
No 155
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=23.21 E-value=1.3e+02 Score=26.07 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHH--HhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHH
Q 007343 354 VKKLKLEMLTAVANESNTYEIVTELCE--YAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALV 431 (607)
Q Consensus 354 Ik~~kL~iL~~l~n~~N~~~Iv~eL~~--y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~ 431 (607)
++...=.+..+|. |++.+++.|++ ++...|. +.|.+ .+....-+..|+++....|+.+.+..+.
T Consensus 29 Lk~hRe~LV~rl~---~v~~LLD~LL~~gvLs~EE~----EiV~~-------~~T~~dKaRrLLDlV~sKGe~a~e~Ll~ 94 (144)
T 4e9m_A 29 LKSNRELLVTHIR---NTQCLVDNLLKNDYFSAEDA----EIVCA-------CPTQPDKVRKILDLVQSKGEEVSEFFLY 94 (144)
T ss_dssp HHHTHHHHHHHCC---CCHHHHHHHHHTTSSCHHHH----HHHHT-------SSSHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---hhHHHHHHHHHcCCCCHHHH----HHHhc-------cCChHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333445666676 46788998874 4443333 22222 3444567889999999999999999999
Q ss_pred HHHHHHHhCCCCch
Q 007343 432 LVKDLLRKYPQWSH 445 (607)
Q Consensus 432 ~i~~i~~~~p~~~~ 445 (607)
.++++-..|.+++.
T Consensus 95 ~Lqql~day~dl~p 108 (144)
T 4e9m_A 95 LLQQLADAYVDLRP 108 (144)
T ss_dssp HHHHHHHHSGGGHH
T ss_pred HHHHccccccchhH
Confidence 99999899988875
No 156
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=23.08 E-value=2.3e+02 Score=31.92 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=57.5
Q ss_pred HHHHHccCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcccCChHHHHHHHHHhhhhcCchhhHHHHHHH
Q 007343 360 EMLTAVANE--SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (607)
Q Consensus 360 ~iL~~l~n~--~N~~~Iv~eL~~y~~~~d~~~~~~~i~~I~~la~k~~~~~~~v~~ll~ll~~~~~~v~~e~i~~i 433 (607)
.++.+++.. .|++.-+.+|...+....+..+...++.+-+|+...|....+.-+++.++......+..+++..+
T Consensus 14 ~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l 89 (771)
T 1h2v_C 14 SLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAM 89 (771)
T ss_dssp HHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHHHHH
Confidence 455666653 56778888888887766677899999999999999998778889999999988766666665543
No 157
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=21.07 E-value=6.1e+02 Score=25.09 Aligned_cols=87 Identities=17% Similarity=0.338 Sum_probs=47.2
Q ss_pred cCCchHHHHHHHHHHhcccCCCCC-hHHHHHHHH--------HhhhcCCcHHHHHHHHHHHHHH-------hhcCCchhH
Q 007343 458 NVQEPKAKAALIWMLGEYSQDMQD-APYILESLT--------ENWEEEPSAEVRLHLLTAVMKC-------FFKRPPETQ 521 (607)
Q Consensus 458 ~~~~~~~~~~~iwilGEy~~~i~~-~~~~l~~l~--------~~f~~e~~~~vk~~iLta~~Kl-------~~~~p~~~~ 521 (607)
...+|++...+.-++...++.+.+ .|.+++.+. ++|. + .|+-|...-..+-.+ ++..|++..
T Consensus 88 ~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~-e-yPehR~~Ff~LL~ai~~~cF~al~~lp~~~f 165 (321)
T 1w9c_A 88 AAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFE-E-YPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF 165 (321)
T ss_dssp GGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTT-C-SHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccc-c-ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH
Confidence 345677777777777777766644 555555432 2332 2 266665543332222 223354433
Q ss_pred HHHHHHHHHhhcCCChhHHhHHHHH
Q 007343 522 KVLGAALAAGLADFHQDVHDRALFY 546 (607)
Q Consensus 522 ~~~~~~l~~~~~d~~~dvrdRA~~y 546 (607)
+.+..-+-|+...++.+|-|.+...
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~i 190 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQI 190 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3343444467777777777777653
Done!