Query 007344
Match_columns 607
No_of_seqs 410 out of 2945
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 23:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tif_A Uncharacterized ABC tra 100.0 1.4E-41 4.9E-46 341.0 22.8 185 1-196 37-231 (235)
2 3tui_C Methionine import ATP-b 100.0 9.6E-42 3.3E-46 360.7 22.2 182 1-196 60-250 (366)
3 3rlf_A Maltose/maltodextrin im 100.0 2E-41 7E-46 360.3 21.7 182 1-196 35-220 (381)
4 3fvq_A Fe(3+) IONS import ATP- 100.0 1E-41 3.5E-46 360.2 17.8 182 1-196 36-225 (359)
5 2pcj_A ABC transporter, lipopr 100.0 7.6E-41 2.6E-45 333.4 21.9 179 1-194 36-223 (224)
6 3gfo_A Cobalt import ATP-bindi 100.0 3.8E-41 1.3E-45 345.1 18.4 182 1-196 40-230 (275)
7 1b0u_A Histidine permease; ABC 100.0 6.8E-41 2.3E-45 341.4 19.8 182 1-196 38-239 (262)
8 2olj_A Amino acid ABC transpor 100.0 9.5E-41 3.3E-45 340.2 20.7 182 1-196 56-245 (263)
9 1z47_A CYSA, putative ABC-tran 100.0 1.1E-40 3.8E-45 352.3 21.5 182 1-196 47-232 (355)
10 2it1_A 362AA long hypothetical 100.0 1.4E-40 4.9E-45 352.6 20.8 182 1-196 35-220 (362)
11 1g29_1 MALK, maltose transport 100.0 2.6E-40 9E-45 352.2 22.0 182 1-196 35-226 (372)
12 2yyz_A Sugar ABC transporter, 100.0 1.3E-40 4.3E-45 352.7 19.0 182 1-196 35-220 (359)
13 1g6h_A High-affinity branched- 100.0 9.3E-41 3.2E-45 339.5 17.3 185 1-196 39-239 (257)
14 1vpl_A ABC transporter, ATP-bi 100.0 2.3E-40 8E-45 336.1 19.8 182 1-196 47-232 (256)
15 2onk_A Molybdate/tungstate ABC 100.0 1.2E-40 4E-45 335.3 17.1 180 1-196 30-213 (240)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1.5E-40 5.2E-45 351.9 18.4 182 1-196 37-227 (353)
17 1v43_A Sugar-binding transport 100.0 2.2E-40 7.5E-45 352.4 18.3 182 1-196 43-228 (372)
18 3d31_A Sulfate/molybdate ABC t 100.0 2.9E-40 9.9E-45 348.7 18.4 179 1-196 32-214 (348)
19 1ji0_A ABC transporter; ATP bi 100.0 3E-40 1E-44 332.4 17.2 181 1-196 38-225 (240)
20 4g1u_C Hemin import ATP-bindin 100.0 4.4E-40 1.5E-44 336.0 17.4 180 1-196 43-234 (266)
21 2yz2_A Putative ABC transporte 100.0 1.5E-39 5.2E-44 332.2 15.0 181 1-196 39-224 (266)
22 2d2e_A SUFC protein; ABC-ATPas 100.0 5.5E-39 1.9E-43 325.1 15.9 184 1-195 35-229 (250)
23 2zu0_C Probable ATP-dependent 100.0 4.2E-38 1.4E-42 321.7 19.0 185 1-196 52-251 (267)
24 2ihy_A ABC transporter, ATP-bi 100.0 6.4E-39 2.2E-43 329.5 12.4 185 1-196 53-249 (279)
25 2qi9_C Vitamin B12 import ATP- 100.0 3.3E-38 1.1E-42 319.1 16.6 176 1-196 32-219 (249)
26 2nq2_C Hypothetical ABC transp 100.0 6.3E-38 2.1E-42 317.9 18.6 176 1-196 37-214 (253)
27 2ff7_A Alpha-hemolysin translo 100.0 4.1E-38 1.4E-42 318.1 14.4 178 1-196 41-229 (247)
28 2ixe_A Antigen peptide transpo 100.0 3.2E-38 1.1E-42 323.1 12.7 179 1-196 51-242 (271)
29 1sgw_A Putative ABC transporte 100.0 5.6E-38 1.9E-42 310.3 13.1 170 1-188 41-210 (214)
30 3nh6_A ATP-binding cassette SU 100.0 1.8E-37 6.3E-42 322.1 15.5 177 1-196 86-274 (306)
31 1mv5_A LMRA, multidrug resista 100.0 9.4E-38 3.2E-42 314.8 12.8 179 1-196 34-223 (243)
32 2pjz_A Hypothetical protein ST 100.0 3.2E-37 1.1E-41 314.1 14.1 172 1-196 36-212 (263)
33 2ghi_A Transport protein; mult 100.0 1.3E-36 4.6E-41 309.3 13.7 176 1-196 52-239 (260)
34 2pze_A Cystic fibrosis transme 100.0 6.2E-36 2.1E-40 298.9 13.8 168 1-196 40-215 (229)
35 2cbz_A Multidrug resistance-as 100.0 5.8E-36 2E-40 300.6 12.4 171 1-196 37-214 (237)
36 3gd7_A Fusion complex of cysti 100.0 1.8E-36 6.1E-41 324.2 7.7 176 1-196 53-239 (390)
37 2yl4_A ATP-binding cassette SU 100.0 7E-35 2.4E-39 329.7 17.5 180 1-196 376-567 (595)
38 3b5x_A Lipid A export ATP-bind 100.0 9E-35 3.1E-39 328.0 16.5 178 1-196 375-564 (582)
39 3b60_A Lipid A export ATP-bind 100.0 1E-34 3.5E-39 327.6 16.4 178 1-196 375-564 (582)
40 3qf4_A ABC transporter, ATP-bi 100.0 1.3E-34 4.6E-39 326.7 13.2 177 1-196 375-563 (587)
41 4a82_A Cystic fibrosis transme 100.0 1.4E-34 4.8E-39 326.1 13.2 177 1-196 373-561 (578)
42 3qf4_B Uncharacterized ABC tra 100.0 1.4E-34 4.9E-39 327.2 10.0 177 1-196 387-575 (598)
43 2bbs_A Cystic fibrosis transme 100.0 3.8E-34 1.3E-38 295.3 11.4 167 1-196 70-244 (290)
44 4f4c_A Multidrug resistance pr 100.0 2.1E-32 7.1E-37 333.5 11.7 179 1-196 1111-1301(1321)
45 3bk7_A ABC transporter ATP-bin 100.0 1.5E-31 5.3E-36 301.6 17.6 170 1-196 388-560 (607)
46 1yqt_A RNAse L inhibitor; ATP- 100.0 1.6E-31 5.5E-36 298.2 15.6 170 1-196 318-490 (538)
47 4f4c_A Multidrug resistance pr 100.0 1.3E-31 4.4E-36 326.6 13.9 177 1-196 450-638 (1321)
48 3ozx_A RNAse L inhibitor; ATP 100.0 4.3E-31 1.5E-35 294.3 15.9 172 1-196 300-474 (538)
49 3g5u_A MCG1178, multidrug resi 100.0 2.2E-31 7.7E-36 323.7 13.3 179 1-196 422-610 (1284)
50 3g5u_A MCG1178, multidrug resi 100.0 3.4E-31 1.2E-35 322.1 13.4 179 1-196 1065-1255(1284)
51 3j16_B RLI1P; ribosome recycli 100.0 1.8E-30 6.2E-35 292.5 17.6 171 1-197 384-557 (608)
52 1yqt_A RNAse L inhibitor; ATP- 100.0 4.1E-30 1.4E-34 286.8 9.2 164 1-187 53-235 (538)
53 3bk7_A ABC transporter ATP-bin 100.0 4E-30 1.4E-34 290.1 9.0 164 1-187 123-305 (607)
54 3ux8_A Excinuclease ABC, A sub 100.0 2.6E-29 8.9E-34 287.9 11.2 189 1-196 50-295 (670)
55 3ozx_A RNAse L inhibitor; ATP 100.0 7.4E-29 2.5E-33 276.2 10.2 165 1-190 31-217 (538)
56 3ux8_A Excinuclease ABC, A sub 99.9 6.7E-28 2.3E-32 276.2 13.8 125 57-196 504-637 (670)
57 2iw3_A Elongation factor 3A; a 99.9 9.4E-28 3.2E-32 280.1 15.0 163 1-196 467-632 (986)
58 2iw3_A Elongation factor 3A; a 99.9 4E-28 1.4E-32 283.2 11.2 175 1-193 705-981 (986)
59 3j16_B RLI1P; ribosome recycli 99.9 8.3E-28 2.8E-32 270.8 11.5 170 1-191 109-302 (608)
60 3pih_A Uvrabc system protein A 99.9 2.1E-25 7E-30 260.2 17.8 124 58-196 767-899 (916)
61 2r6f_A Excinuclease ABC subuni 99.9 7.1E-26 2.4E-30 262.5 12.3 125 57-196 806-939 (972)
62 4aby_A DNA repair protein RECN 99.9 6.4E-25 2.2E-29 237.0 14.5 80 110-192 296-381 (415)
63 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.1E-27 7.2E-32 259.7 -5.9 169 1-196 144-335 (460)
64 2vf7_A UVRA2, excinuclease ABC 99.9 6E-25 2.1E-29 254.3 12.7 108 83-196 708-824 (842)
65 2ygr_A Uvrabc system protein A 99.9 3.4E-25 1.2E-29 257.7 10.5 124 58-196 825-957 (993)
66 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.3E-22 4.5E-27 216.0 15.9 84 105-190 275-364 (365)
67 1ye8_A Protein THEP1, hypothet 99.9 1.1E-22 3.9E-27 195.0 6.0 143 1-190 6-159 (178)
68 1e69_A Chromosome segregation 99.9 3.1E-22 1.1E-26 209.5 9.3 89 104-195 214-309 (322)
69 3b85_A Phosphate starvation-in 99.9 2.2E-24 7.4E-29 212.1 -6.7 125 1-170 28-159 (208)
70 1tq4_A IIGP1, interferon-induc 99.8 1.4E-22 4.6E-27 218.2 -5.0 152 1-181 75-248 (413)
71 3sop_A Neuronal-specific septi 99.8 3.4E-22 1.1E-26 204.2 -4.3 141 1-169 8-150 (270)
72 4gp7_A Metallophosphoesterase; 99.8 4.7E-21 1.6E-25 182.2 1.0 63 108-170 82-160 (171)
73 3pih_A Uvrabc system protein A 99.8 3.4E-20 1.2E-24 216.3 8.5 161 10-196 383-557 (916)
74 1znw_A Guanylate kinase, GMP k 99.8 9.3E-23 3.2E-27 199.7 -16.8 162 1-184 26-202 (207)
75 2r6f_A Excinuclease ABC subuni 99.8 1.8E-18 6.2E-23 200.8 15.4 135 55-196 449-597 (972)
76 3qkt_A DNA double-strand break 99.8 1.5E-18 5.2E-23 182.8 11.9 79 104-184 243-327 (339)
77 3b9q_A Chloroplast SRP recepto 99.8 3.9E-20 1.3E-24 191.8 -0.7 156 1-188 106-284 (302)
78 2vf7_A UVRA2, excinuclease ABC 99.8 4.4E-19 1.5E-23 205.4 7.8 172 4-196 271-472 (842)
79 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2.5E-18 8.7E-23 159.7 9.0 82 104-187 52-141 (148)
80 2ygr_A Uvrabc system protein A 99.7 3.7E-18 1.3E-22 198.8 10.5 135 55-196 466-614 (993)
81 2og2_A Putative signal recogni 99.7 3.4E-19 1.2E-23 188.5 -0.4 156 1-188 163-341 (359)
82 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.8E-18 9.6E-23 180.1 6.4 113 1-188 177-292 (330)
83 2v9p_A Replication protein E1; 99.7 1.1E-20 3.9E-25 195.5 -15.0 137 1-203 132-269 (305)
84 3aez_A Pantothenate kinase; tr 99.7 1.6E-19 5.4E-24 188.1 -7.7 151 1-187 96-246 (312)
85 2dpy_A FLII, flagellum-specifi 99.7 1.2E-19 4.2E-24 197.1 -10.2 156 1-196 163-341 (438)
86 1tf7_A KAIC; homohexamer, hexa 99.7 5.4E-17 1.8E-21 180.7 8.7 144 1-187 287-444 (525)
87 1cr0_A DNA primase/helicase; R 99.6 4.8E-17 1.6E-21 167.6 3.8 164 1-188 41-237 (296)
88 1z6g_A Guanylate kinase; struc 99.6 7.9E-20 2.7E-24 180.6 -19.9 157 1-183 29-207 (218)
89 2ehv_A Hypothetical protein PH 99.6 2.5E-17 8.4E-22 164.2 -2.5 151 1-184 36-206 (251)
90 3szr_A Interferon-induced GTP- 99.6 1.5E-16 5.1E-21 179.9 -1.1 156 1-196 51-234 (608)
91 4a74_A DNA repair and recombin 99.6 2.7E-16 9.1E-21 154.7 0.5 145 1-187 31-201 (231)
92 3thx_A DNA mismatch repair pro 99.6 4.4E-15 1.5E-19 174.1 10.5 88 107-196 719-810 (934)
93 3asz_A Uridine kinase; cytidin 99.6 4.6E-18 1.6E-22 166.0 -13.0 137 1-170 12-162 (211)
94 1rj9_A FTSY, signal recognitio 99.6 2.3E-16 7.9E-21 163.6 -1.3 139 1-169 108-258 (304)
95 2i3b_A HCR-ntpase, human cance 99.5 6.1E-17 2.1E-21 156.6 -6.2 150 1-193 7-170 (189)
96 2eyu_A Twitching motility prot 99.5 2.5E-15 8.6E-20 152.5 5.3 117 1-185 31-147 (261)
97 2o8b_B DNA mismatch repair pro 99.5 5.5E-16 1.9E-20 183.7 0.3 138 1-194 795-937 (1022)
98 3kta_B Chromosome segregation 99.5 1.7E-14 5.7E-19 137.4 9.9 76 106-184 61-140 (173)
99 2obl_A ESCN; ATPase, hydrolase 99.5 2.4E-16 8.1E-21 166.4 -3.2 157 1-196 77-252 (347)
100 4ad8_A DNA repair protein RECN 99.5 1E-14 3.6E-19 161.9 9.1 78 106-186 393-473 (517)
101 1tf7_A KAIC; homohexamer, hexa 99.5 6.4E-16 2.2E-20 172.1 -1.4 148 1-187 45-211 (525)
102 1ewq_A DNA mismatch repair pro 99.5 2.5E-15 8.7E-20 173.1 3.1 130 1-193 582-718 (765)
103 2qnr_A Septin-2, protein NEDD5 99.5 7.9E-17 2.7E-21 167.0 -8.9 140 1-170 24-168 (301)
104 2jeo_A Uridine-cytidine kinase 99.5 5E-16 1.7E-20 155.8 -3.3 135 1-169 31-165 (245)
105 1pzn_A RAD51, DNA repair and r 99.5 7.6E-16 2.6E-20 162.8 -2.2 151 1-194 137-310 (349)
106 2o5v_A DNA replication and rep 99.5 2.4E-14 8.2E-19 151.5 7.5 85 104-196 259-353 (359)
107 3jvv_A Twitching mobility prot 99.5 1.4E-14 4.9E-19 153.2 4.6 117 1-186 129-246 (356)
108 1nlf_A Regulatory protein REPA 99.5 1E-13 3.4E-18 141.6 10.6 141 1-170 36-182 (279)
109 1wb9_A DNA mismatch repair pro 99.4 1.8E-14 6.3E-19 166.8 3.0 140 1-195 613-754 (800)
110 2w0m_A SSO2452; RECA, SSPF, un 99.4 1E-14 3.5E-19 143.2 0.7 78 109-186 103-192 (235)
111 2bdt_A BH3686; alpha-beta prot 99.4 2.1E-16 7.3E-21 151.6 -12.0 165 1-196 8-181 (189)
112 3thx_B DNA mismatch repair pro 99.4 1E-13 3.5E-18 162.2 7.6 80 108-190 734-816 (918)
113 3auy_A DNA double-strand break 99.4 7.4E-13 2.5E-17 140.9 11.0 77 105-184 276-359 (371)
114 2cvh_A DNA repair and recombin 99.3 7.8E-13 2.7E-17 129.0 5.0 77 110-186 85-185 (220)
115 2bbw_A Adenylate kinase 4, AK4 99.3 1.5E-15 5E-20 152.3 -15.0 144 1-158 33-199 (246)
116 1nij_A Hypothetical protein YJ 99.3 2.8E-16 9.4E-21 164.1 -21.4 147 1-170 10-190 (318)
117 1w1w_A Structural maintenance 99.3 3.4E-12 1.2E-16 138.4 9.7 76 107-184 331-410 (430)
118 2qag_C Septin-7; cell cycle, c 99.3 1.1E-13 3.7E-18 149.3 -3.0 137 1-169 37-177 (418)
119 1s96_A Guanylate kinase, GMP k 99.3 5E-14 1.7E-18 139.2 -5.2 125 1-186 22-151 (219)
120 2rcn_A Probable GTPase ENGC; Y 99.3 1.7E-12 5.6E-17 137.0 4.9 123 1-157 221-346 (358)
121 1lw7_A Transcriptional regulat 99.3 2.3E-15 7.7E-20 160.0 -17.3 85 108-196 257-352 (365)
122 1zp6_A Hypothetical protein AT 99.3 1.1E-14 3.9E-19 139.3 -11.2 142 1-167 15-159 (191)
123 2ewv_A Twitching motility prot 99.2 3.8E-12 1.3E-16 135.6 4.3 115 1-184 142-257 (372)
124 1pui_A ENGB, probable GTP-bind 99.2 1.9E-12 6.6E-17 125.2 1.1 74 84-161 128-202 (210)
125 2f1r_A Molybdopterin-guanine d 99.2 1.1E-13 3.7E-18 131.6 -8.8 133 1-160 8-164 (171)
126 1sxj_E Activator 1 40 kDa subu 99.2 1.5E-11 5.3E-16 128.9 6.7 150 1-196 42-195 (354)
127 3ec2_A DNA replication protein 99.2 1.4E-11 4.8E-16 117.0 5.2 48 125-172 98-146 (180)
128 1n0w_A DNA repair protein RAD5 99.2 8.4E-12 2.9E-16 123.5 3.0 77 110-186 99-209 (243)
129 2kjq_A DNAA-related protein; s 99.1 1.6E-11 5.4E-16 113.9 3.9 47 125-172 81-128 (149)
130 2gza_A Type IV secretion syste 99.1 8.5E-11 2.9E-15 124.6 7.4 119 1-187 181-303 (361)
131 3e70_C DPA, signal recognition 99.1 8.9E-12 3E-16 130.3 -1.4 133 1-169 135-279 (328)
132 2yv5_A YJEQ protein; hydrolase 99.1 3.4E-12 1.2E-16 132.1 -5.1 111 1-123 171-301 (302)
133 1odf_A YGR205W, hypothetical 3 99.0 4.8E-12 1.6E-16 130.2 -4.6 121 1-144 37-169 (290)
134 2qag_B Septin-6, protein NEDD5 99.0 1.5E-11 5.1E-16 132.3 -1.8 157 1-168 48-218 (427)
135 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.6E-12 5.3E-17 139.0 -9.9 162 1-196 26-210 (392)
136 1udx_A The GTP-binding protein 99.0 9.8E-12 3.4E-16 133.9 -4.7 155 1-183 163-322 (416)
137 3lda_A DNA repair protein RAD5 98.9 1.9E-09 6.4E-14 115.6 8.8 72 116-187 260-364 (400)
138 2yhs_A FTSY, cell division pro 98.9 2.4E-10 8.2E-15 124.7 1.4 162 1-196 299-476 (503)
139 2qm8_A GTPase/ATPase; G protei 98.9 1.6E-11 5.4E-16 129.0 -9.2 141 1-157 61-260 (337)
140 1p9r_A General secretion pathw 98.9 7.4E-12 2.5E-16 135.1 -12.2 118 1-133 173-315 (418)
141 3c8u_A Fructokinase; YP_612366 98.8 1.1E-11 3.6E-16 121.0 -10.6 140 1-179 28-168 (208)
142 2oap_1 GSPE-2, type II secreti 98.8 2E-11 6.7E-16 135.1 -10.2 158 1-177 266-457 (511)
143 1htw_A HI0065; nucleotide-bind 98.8 3.3E-10 1.1E-14 106.1 -2.1 59 1-66 39-97 (158)
144 1in4_A RUVB, holliday junction 98.7 1.6E-10 5.4E-15 121.1 -6.1 148 1-179 57-211 (334)
145 1u0l_A Probable GTPase ENGC; p 98.7 6.8E-10 2.3E-14 114.7 -2.2 83 1-95 175-281 (301)
146 1t9h_A YLOQ, probable GTPase E 98.7 1.2E-09 4.2E-14 112.9 -2.5 105 1-116 179-302 (307)
147 1lvg_A Guanylate kinase, GMP k 98.6 2.2E-12 7.5E-17 125.1 -22.7 56 120-184 116-172 (198)
148 1vma_A Cell division protein F 98.6 2.6E-08 8.8E-13 103.1 4.1 100 1-156 110-212 (306)
149 2px0_A Flagellar biosynthesis 98.5 9.7E-08 3.3E-12 98.3 8.0 133 1-191 111-247 (296)
150 2x8a_A Nuclear valosin-contain 98.5 7.8E-11 2.7E-15 120.2 -15.9 108 1-137 50-163 (274)
151 2ius_A DNA translocase FTSK; n 98.4 4.5E-09 1.5E-13 115.7 -5.5 151 1-170 173-343 (512)
152 2zr9_A Protein RECA, recombina 98.4 1.4E-07 4.7E-12 99.4 5.9 78 116-193 126-237 (349)
153 2dr3_A UPF0273 protein PH0284; 98.4 8E-07 2.7E-11 87.5 11.0 60 126-185 127-196 (247)
154 1oix_A RAS-related protein RAB 98.4 1.9E-08 6.4E-13 96.1 -0.9 38 116-155 152-189 (191)
155 1ls1_A Signal recognition part 98.4 5E-07 1.7E-11 92.9 8.2 106 1-156 104-210 (295)
156 2r6a_A DNAB helicase, replicat 98.4 8.1E-07 2.8E-11 96.8 9.6 98 84-188 275-401 (454)
157 3k1j_A LON protease, ATP-depen 98.3 1.9E-08 6.3E-13 113.7 -3.8 137 1-154 66-227 (604)
158 1iy2_A ATP-dependent metallopr 98.2 1.4E-09 4.6E-14 110.7 -16.2 105 1-130 79-190 (278)
159 2qtf_A Protein HFLX, GTP-bindi 98.2 8.4E-07 2.9E-11 93.9 4.5 147 1-157 185-353 (364)
160 2ce7_A Cell division protein F 98.2 2.7E-06 9.4E-11 93.0 8.1 59 112-170 93-165 (476)
161 1sq5_A Pantothenate kinase; P- 98.1 2.2E-07 7.6E-12 96.0 -0.7 65 1-71 86-156 (308)
162 1ixz_A ATP-dependent metallopr 98.1 1.9E-09 6.3E-14 108.0 -15.9 105 1-130 55-166 (254)
163 2f9l_A RAB11B, member RAS onco 98.1 1.1E-06 3.7E-11 84.1 3.4 37 118-156 130-166 (199)
164 2e87_A Hypothetical protein PH 98.1 4.3E-06 1.5E-10 88.1 8.0 62 107-170 229-293 (357)
165 1qhl_A Protein (cell division 98.1 5.6E-07 1.9E-11 89.0 0.2 46 1-51 33-91 (227)
166 2xau_A PRE-mRNA-splicing facto 98.0 1E-05 3.5E-10 93.8 8.6 76 106-182 187-264 (773)
167 2z4s_A Chromosomal replication 98.0 6.7E-06 2.3E-10 89.2 6.7 97 126-224 193-296 (440)
168 3tr0_A Guanylate kinase, GMP k 97.9 4E-07 1.4E-11 87.4 -4.2 54 1-63 13-71 (205)
169 3hr8_A Protein RECA; alpha and 97.8 3.7E-06 1.3E-10 88.6 1.7 21 1-21 67-87 (356)
170 3euj_A Chromosome partition pr 97.8 3.1E-06 1.1E-10 92.4 -0.1 34 1-39 35-68 (483)
171 3lnc_A Guanylate kinase, GMP k 97.7 2.1E-09 7E-14 106.2 -23.7 65 125-190 146-215 (231)
172 1fnn_A CDC6P, cell division co 97.7 5.9E-05 2E-09 79.1 8.3 44 126-170 124-170 (389)
173 1svm_A Large T antigen; AAA+ f 97.6 9E-08 3.1E-12 101.7 -15.6 125 1-138 175-312 (377)
174 4eun_A Thermoresistant glucoki 97.6 1.8E-06 6.1E-11 83.1 -5.3 43 1-52 35-81 (200)
175 4a1f_A DNAB helicase, replicat 97.5 7.8E-05 2.7E-09 77.9 5.9 53 109-166 109-163 (338)
176 1jjv_A Dephospho-COA kinase; P 97.5 5.6E-06 1.9E-10 79.7 -3.3 70 111-184 61-131 (206)
177 3b9p_A CG5977-PA, isoform A; A 97.5 0.00039 1.3E-08 70.5 10.2 60 111-170 97-170 (297)
178 3a00_A Guanylate kinase, GMP k 97.4 2.2E-05 7.6E-10 74.5 0.3 21 1-21 7-27 (186)
179 1ega_A Protein (GTP-binding pr 97.4 0.00022 7.4E-09 73.2 7.0 64 110-181 101-170 (301)
180 2dhr_A FTSH; AAA+ protein, hex 97.3 1.2E-06 4E-11 96.4 -11.5 110 1-137 70-186 (499)
181 3t34_A Dynamin-related protein 97.2 0.0023 7.9E-08 67.1 12.6 57 110-167 155-212 (360)
182 4e22_A Cytidylate kinase; P-lo 97.1 3E-05 1E-09 77.5 -2.8 47 1-52 33-96 (252)
183 2qby_A CDC6 homolog 1, cell di 97.1 7.6E-05 2.6E-09 77.9 -0.2 20 1-20 51-70 (386)
184 1kgd_A CASK, peripheral plasma 97.0 0.00012 4E-09 69.1 0.7 21 1-21 11-31 (180)
185 2j41_A Guanylate kinase; GMP, 97.0 0.00017 5.7E-09 68.8 1.1 22 1-22 12-33 (207)
186 1l8q_A Chromosomal replication 96.9 0.0015 5.1E-08 67.2 7.8 47 125-171 96-143 (324)
187 3kl4_A SRP54, signal recogniti 96.9 0.0015 5.1E-08 70.4 8.0 50 119-168 171-223 (433)
188 2w58_A DNAI, primosome compone 96.9 0.001 3.6E-08 63.2 6.0 51 125-175 113-165 (202)
189 1v5w_A DMC1, meiotic recombina 96.8 0.0041 1.4E-07 64.9 10.2 53 116-168 204-273 (343)
190 3uie_A Adenylyl-sulfate kinase 96.8 0.00013 4.5E-09 69.9 -1.4 33 1-39 31-65 (200)
191 3kta_A Chromosome segregation 96.8 0.0003 1E-08 65.9 1.0 22 1-22 32-53 (182)
192 2vp4_A Deoxynucleoside kinase; 96.7 0.00032 1.1E-08 68.9 0.3 29 1-38 26-54 (230)
193 1zu4_A FTSY; GTPase, signal re 96.6 0.0004 1.4E-08 72.0 0.7 60 1-65 111-185 (320)
194 2dy1_A Elongation factor G; tr 96.6 0.00058 2E-08 77.7 2.0 41 125-170 97-137 (665)
195 3cf0_A Transitional endoplasmi 96.6 0.0018 6E-08 66.2 5.3 19 1-19 55-73 (301)
196 2z43_A DNA repair and recombin 96.6 0.0061 2.1E-07 62.9 9.4 54 115-168 188-257 (324)
197 3bh0_A DNAB-like replicative h 96.6 0.0036 1.2E-07 64.4 7.5 53 110-167 134-189 (315)
198 1kag_A SKI, shikimate kinase I 96.5 0.00066 2.3E-08 62.8 1.5 19 1-19 10-28 (173)
199 3tau_A Guanylate kinase, GMP k 96.5 0.00087 3E-08 64.6 2.2 21 1-21 14-34 (208)
200 1rz3_A Hypothetical protein rb 96.4 0.00034 1.2E-08 67.1 -1.1 31 1-36 28-58 (201)
201 3ney_A 55 kDa erythrocyte memb 96.4 0.00076 2.6E-08 64.9 1.1 20 1-20 25-44 (197)
202 1knq_A Gluconate kinase; ALFA/ 96.4 0.00063 2.2E-08 63.2 0.5 29 1-38 14-42 (175)
203 3bos_A Putative DNA replicatio 96.3 0.0022 7.4E-08 62.0 4.1 45 126-170 103-149 (242)
204 3lxx_A GTPase IMAP family memb 96.3 0.021 7.1E-07 55.8 10.9 43 126-168 111-155 (239)
205 1mky_A Probable GTP-binding pr 96.2 0.0033 1.1E-07 67.8 4.9 38 1-38 186-230 (439)
206 2qt1_A Nicotinamide riboside k 96.2 0.002 7E-08 61.6 2.8 19 1-19 27-45 (207)
207 3h4m_A Proteasome-activating n 96.2 0.01 3.4E-07 59.5 8.0 46 124-169 107-166 (285)
208 3llm_A ATP-dependent RNA helic 96.2 0.00095 3.3E-08 65.5 0.3 67 111-179 162-229 (235)
209 3tqc_A Pantothenate kinase; bi 96.1 0.0014 4.8E-08 67.9 1.5 21 1-21 98-118 (321)
210 3cr8_A Sulfate adenylyltranfer 96.1 0.00089 3E-08 74.4 -0.1 33 1-38 375-409 (552)
211 2v1u_A Cell division control p 96.1 0.0034 1.2E-07 65.3 4.3 19 1-19 50-68 (387)
212 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.017 5.7E-07 56.8 8.5 19 1-19 45-63 (262)
213 1ypw_A Transitional endoplasmi 96.0 0.006 2.1E-07 70.9 5.9 20 1-20 244-263 (806)
214 3d8b_A Fidgetin-like protein 1 95.9 0.02 6.7E-07 59.9 8.9 19 1-19 123-141 (357)
215 1f2t_A RAD50 ABC-ATPase; DNA d 95.6 0.0037 1.3E-07 57.1 1.9 17 1-17 29-45 (149)
216 2www_A Methylmalonic aciduria 95.6 0.0018 6.3E-08 67.8 -0.2 31 1-36 80-110 (349)
217 4ad8_A DNA repair protein RECN 95.6 0.00075 2.6E-08 74.5 -3.4 141 1-162 66-246 (517)
218 2gj8_A MNME, tRNA modification 95.5 0.0094 3.2E-07 55.0 4.3 19 1-19 10-28 (172)
219 1cke_A CK, MSSA, protein (cyti 95.5 0.0039 1.4E-07 60.2 1.7 19 1-19 11-29 (227)
220 2qgz_A Helicase loader, putati 95.4 0.0063 2.2E-07 62.5 2.7 51 125-175 212-264 (308)
221 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.095 3.3E-06 53.8 11.6 19 1-19 51-69 (322)
222 1u94_A RECA protein, recombina 95.2 0.029 9.8E-07 58.8 7.2 76 117-192 129-238 (356)
223 1w1w_A Structural maintenance 95.2 0.0053 1.8E-07 65.9 1.4 22 1-22 32-53 (430)
224 2if2_A Dephospho-COA kinase; a 95.1 0.0052 1.8E-07 58.4 1.2 17 1-17 7-23 (204)
225 3n70_A Transport activator; si 95.1 0.047 1.6E-06 49.1 7.3 43 127-171 76-118 (145)
226 2wji_A Ferrous iron transport 95.0 0.0081 2.8E-07 54.9 2.0 19 1-19 9-27 (165)
227 2qor_A Guanylate kinase; phosp 95.0 0.0066 2.3E-07 58.0 1.3 20 1-20 18-37 (204)
228 1np6_A Molybdopterin-guanine d 94.9 0.0076 2.6E-07 56.7 1.5 34 1-36 12-45 (174)
229 3m6a_A ATP-dependent protease 94.8 0.0065 2.2E-07 67.4 1.0 31 1-36 114-144 (543)
230 3t61_A Gluconokinase; PSI-biol 94.8 0.0087 3E-07 56.8 1.6 19 1-19 24-42 (202)
231 2o5v_A DNA replication and rep 94.7 0.009 3.1E-07 62.8 1.7 39 78-123 128-166 (359)
232 3vaa_A Shikimate kinase, SK; s 94.7 0.0097 3.3E-07 56.5 1.7 19 1-19 31-49 (199)
233 1m7g_A Adenylylsulfate kinase; 94.7 0.0049 1.7E-07 59.2 -0.4 32 1-37 31-64 (211)
234 3qks_A DNA double-strand break 94.6 0.011 3.8E-07 56.7 1.9 18 1-18 29-46 (203)
235 3kb2_A SPBC2 prophage-derived 94.5 0.012 4.1E-07 53.8 1.8 19 1-19 7-25 (173)
236 2wjg_A FEOB, ferrous iron tran 94.5 0.012 4.2E-07 54.4 2.0 18 1-18 13-30 (188)
237 2qag_A Septin-2, protein NEDD5 94.5 0.0055 1.9E-07 64.4 -0.7 21 1-21 43-63 (361)
238 2zej_A Dardarin, leucine-rich 94.4 0.012 4.2E-07 54.7 1.7 19 1-19 8-26 (184)
239 2pez_A Bifunctional 3'-phospho 94.3 0.013 4.6E-07 54.4 1.7 21 1-21 11-31 (179)
240 2q6t_A DNAB replication FORK h 94.3 0.18 6.2E-06 54.1 10.9 53 109-166 264-317 (444)
241 2yvu_A Probable adenylyl-sulfa 94.2 0.0094 3.2E-07 55.8 0.5 21 1-21 19-39 (186)
242 1qhx_A CPT, protein (chloramph 94.2 0.016 5.4E-07 53.5 1.9 20 1-20 9-28 (178)
243 3syl_A Protein CBBX; photosynt 94.1 0.13 4.4E-06 51.8 8.7 20 1-20 73-92 (309)
244 1ex7_A Guanylate kinase; subst 94.1 0.017 5.8E-07 54.9 1.9 20 1-20 7-26 (186)
245 2ohf_A Protein OLA1, GTP-bindi 94.0 0.024 8.4E-07 60.1 3.2 18 1-18 28-45 (396)
246 3nwj_A ATSK2; P loop, shikimat 93.8 0.018 6.1E-07 57.3 1.6 19 1-19 54-72 (250)
247 3ihw_A Centg3; RAS, centaurin, 93.8 0.048 1.6E-06 50.8 4.4 19 1-19 26-44 (184)
248 2p67_A LAO/AO transport system 93.7 0.011 3.7E-07 61.5 -0.3 22 1-22 62-83 (341)
249 2i1q_A DNA repair and recombin 93.6 0.2 6.7E-06 51.2 9.2 68 117-184 191-289 (322)
250 1via_A Shikimate kinase; struc 93.6 0.024 8.3E-07 52.4 1.9 19 1-19 10-28 (175)
251 3lw7_A Adenylate kinase relate 93.5 0.025 8.5E-07 51.4 1.8 15 1-15 7-21 (179)
252 2ze6_A Isopentenyl transferase 93.4 0.024 8.2E-07 56.3 1.7 19 1-19 7-25 (253)
253 1ly1_A Polynucleotide kinase; 93.4 0.027 9.3E-07 51.8 1.9 17 1-17 8-24 (181)
254 3cm0_A Adenylate kinase; ATP-b 93.4 0.027 9.3E-07 52.3 1.9 18 1-18 10-27 (186)
255 2jaq_A Deoxyguanosine kinase; 93.3 0.028 9.6E-07 52.8 1.9 19 1-19 6-24 (205)
256 2p5t_B PEZT; postsegregational 93.2 0.018 6.1E-07 57.1 0.4 31 1-38 38-68 (253)
257 3bgw_A DNAB-like replicative h 93.2 0.15 5.3E-06 54.8 7.8 58 109-168 290-359 (444)
258 1kht_A Adenylate kinase; phosp 93.1 0.036 1.2E-06 51.4 2.3 19 1-19 9-27 (192)
259 1lv7_A FTSH; alpha/beta domain 93.0 0.034 1.2E-06 54.8 2.1 19 1-19 51-69 (257)
260 3trf_A Shikimate kinase, SK; a 92.9 0.035 1.2E-06 51.5 1.9 19 1-19 11-29 (185)
261 3iij_A Coilin-interacting nucl 92.8 0.036 1.2E-06 51.4 1.9 18 1-18 17-34 (180)
262 1f6b_A SAR1; gtpases, N-termin 92.8 0.048 1.6E-06 51.4 2.8 18 1-18 31-48 (198)
263 3k53_A Ferrous iron transport 92.8 0.031 1E-06 55.9 1.4 47 136-183 144-191 (271)
264 2fn4_A P23, RAS-related protei 92.7 0.065 2.2E-06 48.7 3.5 19 1-19 15-33 (181)
265 4ag6_A VIRB4 ATPase, type IV s 92.7 0.03 1E-06 59.1 1.2 45 127-171 262-309 (392)
266 1m2o_B GTP-binding protein SAR 92.6 0.054 1.9E-06 50.6 2.9 18 1-18 29-46 (190)
267 1nks_A Adenylate kinase; therm 92.6 0.034 1.2E-06 51.6 1.4 20 1-20 7-26 (194)
268 2ged_A SR-beta, signal recogni 92.6 0.038 1.3E-06 51.4 1.7 19 1-19 54-72 (193)
269 1z2a_A RAS-related protein RAB 92.5 0.039 1.3E-06 49.6 1.6 19 1-19 11-29 (168)
270 2rhm_A Putative kinase; P-loop 92.5 0.035 1.2E-06 51.7 1.4 19 1-19 11-29 (193)
271 2erx_A GTP-binding protein DI- 92.4 0.046 1.6E-06 49.2 2.0 19 1-19 9-27 (172)
272 4eaq_A DTMP kinase, thymidylat 92.4 0.038 1.3E-06 54.1 1.4 21 1-21 32-52 (229)
273 3r20_A Cytidylate kinase; stru 92.4 0.044 1.5E-06 53.9 1.9 19 1-19 15-33 (233)
274 1vht_A Dephospho-COA kinase; s 92.4 0.047 1.6E-06 52.3 2.1 17 1-17 10-26 (218)
275 1xjc_A MOBB protein homolog; s 92.4 0.043 1.5E-06 51.3 1.7 21 1-21 10-30 (169)
276 2nzj_A GTP-binding protein REM 92.3 0.049 1.7E-06 49.4 2.0 19 1-19 10-28 (175)
277 2dyk_A GTP-binding protein; GT 92.3 0.045 1.5E-06 48.9 1.7 19 1-19 7-25 (161)
278 3euj_A Chromosome partition pr 92.2 0.16 5.5E-06 55.2 6.3 72 106-184 376-464 (483)
279 1y63_A LMAJ004144AAA protein; 92.2 0.048 1.7E-06 51.0 1.9 18 1-18 16-33 (184)
280 1u8z_A RAS-related protein RAL 92.2 0.046 1.6E-06 48.9 1.6 19 1-19 10-28 (168)
281 2ce2_X GTPase HRAS; signaling 92.2 0.039 1.3E-06 49.2 1.1 19 1-19 9-27 (166)
282 3q72_A GTP-binding protein RAD 92.1 0.039 1.3E-06 49.7 1.1 20 1-20 8-27 (166)
283 1kao_A RAP2A; GTP-binding prot 92.1 0.048 1.6E-06 48.7 1.7 19 1-19 9-27 (167)
284 3q85_A GTP-binding protein REM 92.1 0.053 1.8E-06 48.9 2.0 19 1-19 8-26 (169)
285 2ffh_A Protein (FFH); SRP54, s 92.0 0.035 1.2E-06 59.5 0.7 33 1-38 104-136 (425)
286 1gvn_B Zeta; postsegregational 92.0 0.044 1.5E-06 55.5 1.4 19 1-19 39-57 (287)
287 1z0j_A RAB-22, RAS-related pro 92.0 0.051 1.7E-06 48.9 1.7 19 1-19 12-30 (170)
288 3tw8_B RAS-related protein RAB 92.0 0.05 1.7E-06 49.5 1.6 19 1-19 15-33 (181)
289 1gtv_A TMK, thymidylate kinase 91.9 0.027 9.3E-07 53.5 -0.2 20 1-20 6-25 (214)
290 1z08_A RAS-related protein RAB 91.9 0.053 1.8E-06 48.9 1.7 19 1-19 12-30 (170)
291 1ek0_A Protein (GTP-binding pr 91.9 0.083 2.8E-06 47.4 3.0 19 1-19 9-27 (170)
292 2z0h_A DTMP kinase, thymidylat 91.8 0.063 2.2E-06 50.1 2.2 19 1-19 6-24 (197)
293 1c1y_A RAS-related protein RAP 91.8 0.11 3.7E-06 46.5 3.7 19 1-19 9-27 (167)
294 2bov_A RAla, RAS-related prote 91.7 0.11 3.9E-06 48.4 3.9 19 1-19 20-38 (206)
295 1wms_A RAB-9, RAB9, RAS-relate 91.7 0.056 1.9E-06 49.1 1.7 19 1-19 13-31 (177)
296 1ky3_A GTP-binding protein YPT 91.7 0.056 1.9E-06 49.2 1.7 19 1-19 14-32 (182)
297 3fb4_A Adenylate kinase; psych 91.7 0.059 2E-06 51.4 1.9 19 1-19 6-24 (216)
298 2lkc_A Translation initiation 91.7 0.061 2.1E-06 48.9 1.9 19 1-19 14-32 (178)
299 3b1v_A Ferrous iron uptake tra 91.7 0.061 2.1E-06 54.1 2.0 19 1-19 9-27 (272)
300 1e6c_A Shikimate kinase; phosp 91.6 0.063 2.2E-06 49.1 1.9 19 1-19 8-26 (173)
301 1svi_A GTP-binding protein YSX 91.5 0.052 1.8E-06 50.4 1.2 19 1-19 29-47 (195)
302 3lxw_A GTPase IMAP family memb 91.5 0.063 2.2E-06 52.9 1.9 54 114-168 89-148 (247)
303 2plr_A DTMP kinase, probable t 91.5 0.074 2.5E-06 50.2 2.3 20 1-20 10-29 (213)
304 1g16_A RAS-related protein SEC 91.5 0.051 1.8E-06 48.9 1.1 19 1-19 9-27 (170)
305 1fzq_A ADP-ribosylation factor 91.5 0.05 1.7E-06 50.4 1.1 18 1-18 22-39 (181)
306 2vhj_A Ntpase P4, P4; non- hyd 91.5 0.21 7.1E-06 51.5 5.7 18 1-18 129-146 (331)
307 1q3t_A Cytidylate kinase; nucl 91.5 0.059 2E-06 52.5 1.6 19 1-19 22-40 (236)
308 3pqc_A Probable GTP-binding pr 91.4 0.054 1.9E-06 50.0 1.2 19 1-19 29-47 (195)
309 1uf9_A TT1252 protein; P-loop, 91.4 0.055 1.9E-06 50.8 1.3 18 1-18 14-31 (203)
310 2v54_A DTMP kinase, thymidylat 91.4 0.077 2.6E-06 49.9 2.3 19 1-19 10-28 (204)
311 3dl0_A Adenylate kinase; phosp 91.3 0.068 2.3E-06 51.0 1.9 19 1-19 6-24 (216)
312 3auy_A DNA double-strand break 91.3 0.063 2.2E-06 56.3 1.8 16 1-16 31-46 (371)
313 1sxj_C Activator 1 40 kDa subu 91.3 0.067 2.3E-06 55.1 1.9 21 1-21 52-72 (340)
314 1jal_A YCHF protein; nucleotid 91.3 0.093 3.2E-06 55.0 3.0 19 1-19 8-26 (363)
315 1r2q_A RAS-related protein RAB 91.3 0.065 2.2E-06 48.1 1.6 19 1-19 12-30 (170)
316 4dsu_A GTPase KRAS, isoform 2B 91.3 0.13 4.3E-06 47.2 3.6 19 1-19 10-28 (189)
317 3t5g_A GTP-binding protein RHE 91.3 0.13 4.6E-06 46.9 3.8 18 1-18 12-29 (181)
318 2hxs_A RAB-26, RAS-related pro 91.2 0.075 2.6E-06 48.3 2.0 19 1-19 12-30 (178)
319 1j8m_F SRP54, signal recogniti 91.2 0.028 9.5E-07 57.4 -1.1 32 1-37 104-135 (297)
320 3clv_A RAB5 protein, putative; 91.2 0.067 2.3E-06 49.5 1.7 19 1-19 13-31 (208)
321 2ew1_A RAS-related protein RAB 91.2 0.13 4.6E-06 48.6 3.8 19 1-19 32-50 (201)
322 1upt_A ARL1, ADP-ribosylation 91.2 0.068 2.3E-06 48.2 1.6 19 1-19 13-31 (171)
323 1tev_A UMP-CMP kinase; ploop, 91.2 0.074 2.5E-06 49.4 1.9 18 1-18 9-26 (196)
324 2cxx_A Probable GTP-binding pr 91.1 0.061 2.1E-06 49.5 1.2 19 1-19 7-25 (190)
325 1q57_A DNA primase/helicase; d 91.1 2 6.8E-05 46.7 13.6 66 118-184 343-440 (503)
326 1r8s_A ADP-ribosylation factor 91.0 0.074 2.5E-06 47.7 1.6 18 1-18 6-23 (164)
327 3bc1_A RAS-related protein RAB 90.9 0.073 2.5E-06 48.9 1.6 19 1-19 17-35 (195)
328 3t1o_A Gliding protein MGLA; G 90.9 0.083 2.8E-06 48.8 2.0 21 1-21 20-40 (198)
329 2c95_A Adenylate kinase 1; tra 90.9 0.068 2.3E-06 49.8 1.4 19 1-19 15-33 (196)
330 3ake_A Cytidylate kinase; CMP 90.9 0.082 2.8E-06 49.8 2.0 19 1-19 8-26 (208)
331 2oil_A CATX-8, RAS-related pro 90.8 0.075 2.6E-06 49.4 1.6 19 1-19 31-49 (193)
332 1zak_A Adenylate kinase; ATP:A 90.8 0.068 2.3E-06 51.4 1.4 19 1-19 11-29 (222)
333 1z0f_A RAB14, member RAS oncog 90.8 0.077 2.6E-06 48.1 1.6 19 1-19 21-39 (179)
334 3con_A GTPase NRAS; structural 90.8 0.077 2.6E-06 49.1 1.6 19 1-19 27-45 (190)
335 2pt5_A Shikimate kinase, SK; a 90.8 0.095 3.3E-06 47.6 2.2 19 1-19 6-24 (168)
336 1nrj_B SR-beta, signal recogni 90.8 0.077 2.6E-06 50.4 1.6 19 1-19 18-36 (218)
337 2pbr_A DTMP kinase, thymidylat 90.8 0.095 3.2E-06 48.6 2.2 19 1-19 6-24 (195)
338 2a9k_A RAS-related protein RAL 90.8 0.078 2.7E-06 48.5 1.6 19 1-19 24-42 (187)
339 2g6b_A RAS-related protein RAB 90.7 0.079 2.7E-06 48.3 1.6 20 1-20 16-35 (180)
340 2efe_B Small GTP-binding prote 90.6 0.084 2.9E-06 48.1 1.7 19 1-19 18-36 (181)
341 2bcg_Y Protein YP2, GTP-bindin 90.6 0.17 5.9E-06 47.4 3.9 19 1-19 14-32 (206)
342 2iyv_A Shikimate kinase, SK; t 90.6 0.089 3.1E-06 48.7 1.9 19 1-19 8-26 (184)
343 3t5d_A Septin-7; GTP-binding p 90.6 0.069 2.4E-06 53.4 1.1 19 1-19 14-32 (274)
344 2y8e_A RAB-protein 6, GH09086P 90.5 0.073 2.5E-06 48.3 1.1 19 1-19 20-38 (179)
345 2bwj_A Adenylate kinase 5; pho 90.5 0.079 2.7E-06 49.5 1.4 19 1-19 18-36 (199)
346 1moz_A ARL1, ADP-ribosylation 90.5 0.051 1.8E-06 49.8 0.1 17 1-17 24-40 (183)
347 1zd8_A GTP:AMP phosphotransfer 90.4 0.079 2.7E-06 51.1 1.4 19 1-19 13-31 (227)
348 1ksh_A ARF-like protein 2; sma 90.4 0.091 3.1E-06 48.4 1.7 19 1-19 24-42 (186)
349 2wwf_A Thymidilate kinase, put 90.3 0.092 3.2E-06 49.7 1.7 19 1-19 16-34 (212)
350 3c5c_A RAS-like protein 12; GD 90.3 0.2 6.8E-06 46.5 4.0 19 1-19 27-45 (187)
351 3iby_A Ferrous iron transport 90.2 0.085 2.9E-06 52.4 1.4 19 1-19 7-25 (256)
352 1jbk_A CLPB protein; beta barr 90.2 0.12 4E-06 47.3 2.3 19 1-19 49-67 (195)
353 3cmw_A Protein RECA, recombina 90.2 0.57 1.9E-05 58.2 8.9 71 117-187 798-902 (1706)
354 1wf3_A GTP-binding protein; GT 90.2 0.1 3.4E-06 53.3 2.0 19 1-19 13-31 (301)
355 3kkq_A RAS-related protein M-R 90.2 0.23 7.7E-06 45.4 4.2 19 1-19 24-42 (183)
356 3tkl_A RAS-related protein RAB 90.1 0.095 3.2E-06 48.5 1.6 19 1-19 22-40 (196)
357 2cdn_A Adenylate kinase; phosp 90.1 0.1 3.5E-06 49.2 1.9 19 1-19 26-44 (201)
358 1vg8_A RAS-related protein RAB 90.1 0.096 3.3E-06 49.0 1.7 19 1-19 14-32 (207)
359 1ukz_A Uridylate kinase; trans 90.1 0.1 3.5E-06 49.2 1.9 18 1-18 21-38 (203)
360 2bme_A RAB4A, RAS-related prot 90.1 0.082 2.8E-06 48.5 1.1 19 1-19 16-34 (186)
361 1aky_A Adenylate kinase; ATP:A 90.1 0.1 3.6E-06 50.0 1.9 19 1-19 10-28 (220)
362 2gf9_A RAS-related protein RAB 90.1 0.097 3.3E-06 48.5 1.6 19 1-19 28-46 (189)
363 2vli_A Antibiotic resistance p 90.0 0.081 2.8E-06 48.8 1.0 19 1-19 11-29 (183)
364 2xb4_A Adenylate kinase; ATP-b 90.0 0.11 3.7E-06 50.2 1.9 18 1-18 6-23 (223)
365 3cbq_A GTP-binding protein REM 89.9 0.082 2.8E-06 49.7 1.0 18 1-18 29-46 (195)
366 1zbd_A Rabphilin-3A; G protein 89.9 0.11 3.9E-06 48.5 2.0 19 1-19 14-32 (203)
367 1mh1_A RAC1; GTP-binding, GTPa 89.8 0.1 3.6E-06 47.6 1.6 19 1-19 11-29 (186)
368 2il1_A RAB12; G-protein, GDP, 89.8 0.1 3.5E-06 48.6 1.6 19 1-19 32-50 (192)
369 2ga8_A Hypothetical 39.9 kDa p 89.7 0.1 3.6E-06 54.4 1.7 20 1-20 30-49 (359)
370 1z06_A RAS-related protein RAB 89.7 0.11 3.7E-06 48.1 1.7 19 1-19 26-44 (189)
371 3a1s_A Iron(II) transport prot 89.7 0.12 4E-06 51.4 2.0 19 1-19 11-29 (258)
372 2gf0_A GTP-binding protein DI- 89.7 0.093 3.2E-06 48.7 1.2 19 1-19 14-32 (199)
373 2xtp_A GTPase IMAP family memb 89.6 0.1 3.5E-06 51.4 1.5 19 1-19 28-46 (260)
374 1m7b_A RND3/RHOE small GTP-bin 89.6 0.094 3.2E-06 48.4 1.1 19 1-19 13-31 (184)
375 2dby_A GTP-binding protein; GD 89.6 0.11 3.6E-06 54.7 1.6 19 1-19 7-25 (368)
376 1nn5_A Similar to deoxythymidy 89.6 0.11 3.9E-06 49.1 1.7 19 1-19 15-33 (215)
377 1e4v_A Adenylate kinase; trans 89.5 0.1 3.5E-06 49.8 1.4 19 1-19 6-24 (214)
378 1qf9_A UMP/CMP kinase, protein 89.5 0.12 4E-06 47.9 1.7 18 1-18 12-29 (194)
379 2fg5_A RAB-22B, RAS-related pr 89.4 0.1 3.4E-06 48.7 1.2 19 1-19 29-47 (192)
380 2a5j_A RAS-related protein RAB 89.4 0.11 3.9E-06 48.1 1.6 19 1-19 27-45 (191)
381 2gco_A H9, RHO-related GTP-bin 89.4 0.24 8.4E-06 46.3 3.9 19 1-19 31-49 (201)
382 2qu8_A Putative nucleolar GTP- 89.4 0.12 4.1E-06 49.7 1.7 18 1-18 35-52 (228)
383 3bwd_D RAC-like GTP-binding pr 89.4 0.12 4.1E-06 47.1 1.6 19 1-19 14-32 (182)
384 1jwy_B Dynamin A GTPase domain 89.4 0.11 3.8E-06 52.6 1.5 19 1-19 30-48 (315)
385 2r62_A Cell division protease 89.4 0.13 4.4E-06 50.8 2.0 19 1-19 50-68 (268)
386 1ltq_A Polynucleotide kinase; 89.3 0.13 4.3E-06 51.8 1.9 18 1-18 8-25 (301)
387 3i8s_A Ferrous iron transport 89.3 0.11 3.8E-06 52.0 1.5 19 1-19 9-27 (274)
388 4dhe_A Probable GTP-binding pr 89.3 0.064 2.2E-06 51.1 -0.3 19 1-19 35-53 (223)
389 3tlx_A Adenylate kinase 2; str 89.2 0.13 4.5E-06 50.5 1.9 18 1-18 35-52 (243)
390 1zuh_A Shikimate kinase; alpha 89.2 0.13 4.6E-06 46.8 1.9 19 1-19 13-31 (168)
391 4bas_A ADP-ribosylation factor 89.2 0.12 4.2E-06 47.9 1.6 19 1-19 23-41 (199)
392 3oes_A GTPase rhebl1; small GT 89.2 0.1 3.6E-06 48.9 1.1 20 1-20 30-49 (201)
393 4fcw_A Chaperone protein CLPB; 89.2 0.1 3.5E-06 52.5 1.2 52 123-175 114-176 (311)
394 3reg_A RHO-like small GTPase; 89.2 0.12 4.3E-06 47.9 1.6 19 1-19 29-47 (194)
395 1x3s_A RAS-related protein RAB 89.2 0.12 4.3E-06 47.6 1.6 19 1-19 21-39 (195)
396 2cjw_A GTP-binding protein GEM 89.2 0.12 4.3E-06 48.3 1.6 18 1-18 12-29 (192)
397 2atv_A RERG, RAS-like estrogen 89.2 0.13 4.3E-06 48.0 1.7 19 1-19 34-52 (196)
398 1zd9_A ADP-ribosylation factor 89.1 0.13 4.3E-06 47.8 1.6 19 1-19 28-46 (188)
399 1lw7_A Transcriptional regulat 89.1 0.22 7.5E-06 51.9 3.7 123 1-137 176-329 (365)
400 1zj6_A ADP-ribosylation factor 89.1 0.12 4.1E-06 47.8 1.4 18 1-18 22-39 (187)
401 2f7s_A C25KG, RAS-related prot 89.1 0.14 4.8E-06 48.5 2.0 19 1-19 31-49 (217)
402 3iev_A GTP-binding protein ERA 89.1 0.13 4.6E-06 52.3 2.0 19 1-19 16-34 (308)
403 2wsm_A Hydrogenase expression/ 89.0 0.11 3.8E-06 49.5 1.2 19 1-19 36-54 (221)
404 2o52_A RAS-related protein RAB 89.0 0.12 4.2E-06 48.5 1.5 19 1-19 31-49 (200)
405 3a4m_A L-seryl-tRNA(SEC) kinas 89.0 0.16 5.4E-06 50.4 2.3 19 1-19 10-28 (260)
406 2h57_A ADP-ribosylation factor 89.0 0.094 3.2E-06 48.6 0.6 19 1-19 27-45 (190)
407 3cph_A RAS-related protein SEC 88.9 0.13 4.5E-06 48.3 1.6 19 1-19 26-44 (213)
408 3dz8_A RAS-related protein RAB 88.9 0.11 3.8E-06 48.2 1.1 19 1-19 29-47 (191)
409 2p5s_A RAS and EF-hand domain 88.9 0.13 4.5E-06 48.1 1.6 19 1-19 34-52 (199)
410 3llu_A RAS-related GTP-binding 88.9 0.13 4.6E-06 48.0 1.6 20 1-20 26-45 (196)
411 2h17_A ADP-ribosylation factor 88.8 0.11 3.7E-06 47.8 1.0 18 1-18 27-44 (181)
412 2q3h_A RAS homolog gene family 88.8 0.15 5.2E-06 47.5 2.0 19 1-19 26-44 (201)
413 2p65_A Hypothetical protein PF 88.7 0.13 4.5E-06 46.9 1.4 20 1-20 49-68 (187)
414 2iwr_A Centaurin gamma 1; ANK 88.6 0.11 3.8E-06 47.3 0.9 19 1-19 13-31 (178)
415 1njg_A DNA polymerase III subu 88.4 0.18 6.2E-06 47.7 2.2 43 126-170 125-167 (250)
416 2fh5_B SR-beta, signal recogni 88.4 0.15 5.1E-06 48.2 1.6 19 1-19 13-31 (214)
417 2fv8_A H6, RHO-related GTP-bin 88.3 0.13 4.5E-06 48.5 1.2 19 1-19 31-49 (207)
418 2aka_B Dynamin-1; fusion prote 88.3 0.13 4.5E-06 51.5 1.2 19 1-19 32-50 (299)
419 1g5t_A COB(I)alamin adenosyltr 88.3 0.33 1.1E-05 46.3 3.9 71 115-186 106-180 (196)
420 3cnl_A YLQF, putative uncharac 88.2 0.16 5.5E-06 50.7 1.8 20 1-20 105-124 (262)
421 1h65_A Chloroplast outer envel 88.2 0.15 5E-06 50.8 1.4 19 1-19 45-63 (270)
422 2grj_A Dephospho-COA kinase; T 88.1 0.17 5.9E-06 48.0 1.9 18 1-18 18-35 (192)
423 2j1l_A RHO-related GTP-binding 88.1 0.15 5.3E-06 48.4 1.5 19 1-19 40-58 (214)
424 2fu5_C RAS-related protein RAB 88.0 0.11 3.7E-06 47.6 0.4 19 1-19 14-32 (183)
425 3be4_A Adenylate kinase; malar 87.9 0.16 5.3E-06 48.8 1.4 19 1-19 11-29 (217)
426 1gwn_A RHO-related GTP-binding 87.9 0.14 4.9E-06 48.5 1.1 19 1-19 34-52 (205)
427 1uj2_A Uridine-cytidine kinase 87.9 0.2 6.8E-06 49.2 2.2 19 1-19 28-46 (252)
428 1ak2_A Adenylate kinase isoenz 87.9 0.18 6.3E-06 48.8 1.9 19 1-19 22-40 (233)
429 3def_A T7I23.11 protein; chlor 87.8 0.16 5.5E-06 50.3 1.5 19 1-19 42-60 (262)
430 2yc2_C IFT27, small RAB-relate 87.8 0.11 3.7E-06 48.6 0.2 18 1-18 26-43 (208)
431 3sr0_A Adenylate kinase; phosp 87.6 0.19 6.6E-06 48.2 1.9 19 1-19 6-24 (206)
432 2b6h_A ADP-ribosylation factor 87.6 0.15 5.2E-06 47.6 1.1 18 1-18 35-52 (192)
433 1sxj_D Activator 1 41 kDa subu 87.2 0.21 7.2E-06 51.0 2.0 43 127-171 133-175 (353)
434 1a7j_A Phosphoribulokinase; tr 87.2 0.11 3.8E-06 52.6 -0.1 18 2-19 12-29 (290)
435 2atx_A Small GTP binding prote 87.0 0.18 6.1E-06 46.8 1.2 19 1-19 24-42 (194)
436 3pxi_A Negative regulator of g 86.9 0.81 2.8E-05 52.5 6.9 19 1-19 527-545 (758)
437 3cmu_A Protein RECA, recombina 86.9 1 3.5E-05 56.8 8.1 71 117-187 449-553 (2050)
438 4djt_A GTP-binding nuclear pro 86.8 0.1 3.5E-06 49.5 -0.6 19 1-19 17-35 (218)
439 2f6r_A COA synthase, bifunctio 86.8 0.22 7.4E-06 50.1 1.8 17 1-17 81-97 (281)
440 2chg_A Replication factor C sm 86.8 0.26 8.9E-06 46.0 2.2 41 127-169 102-142 (226)
441 2g3y_A GTP-binding protein GEM 86.7 0.24 8.3E-06 47.5 2.0 18 1-18 43-60 (211)
442 3cpj_B GTP-binding protein YPT 86.6 0.22 7.6E-06 47.6 1.6 19 1-19 19-37 (223)
443 3umf_A Adenylate kinase; rossm 86.6 0.24 8.3E-06 48.0 1.9 19 1-19 35-53 (217)
444 2x77_A ADP-ribosylation factor 86.2 0.14 4.9E-06 47.2 0.1 18 1-18 28-45 (189)
445 3crm_A TRNA delta(2)-isopenten 86.1 0.26 8.8E-06 50.8 1.9 19 1-19 11-29 (323)
446 4edh_A DTMP kinase, thymidylat 86.1 0.3 1E-05 47.1 2.2 20 2-21 13-32 (213)
447 4gzl_A RAS-related C3 botulinu 86.1 0.57 1.9E-05 44.0 4.2 19 1-19 36-54 (204)
448 2hf9_A Probable hydrogenase ni 86.0 0.21 7.2E-06 47.6 1.1 19 1-19 44-62 (226)
449 2hup_A RAS-related protein RAB 86.0 0.21 7.3E-06 46.9 1.2 19 1-19 35-53 (201)
450 3q3j_B RHO-related GTP-binding 85.8 0.26 8.7E-06 47.0 1.6 19 1-19 33-51 (214)
451 3zvl_A Bifunctional polynucleo 85.6 0.26 8.7E-06 52.6 1.7 18 1-18 264-281 (416)
452 1d2n_A N-ethylmaleimide-sensit 85.5 0.32 1.1E-05 48.1 2.2 18 1-18 70-87 (272)
453 3a8t_A Adenylate isopentenyltr 85.4 0.42 1.4E-05 49.5 3.1 19 1-19 46-64 (339)
454 2qmh_A HPR kinase/phosphorylas 85.4 0.28 9.4E-06 47.1 1.6 18 1-18 40-57 (205)
455 3gee_A MNME, tRNA modification 85.4 0.32 1.1E-05 52.9 2.3 19 1-19 239-257 (476)
456 2ocp_A DGK, deoxyguanosine kin 85.3 0.29 9.8E-06 47.6 1.8 18 2-19 9-26 (241)
457 3d3q_A TRNA delta(2)-isopenten 85.3 0.29 1E-05 50.7 1.9 19 1-19 13-31 (340)
458 2j0v_A RAC-like GTP-binding pr 85.1 0.25 8.4E-06 46.6 1.1 19 1-19 15-33 (212)
459 2h92_A Cytidylate kinase; ross 85.0 0.32 1.1E-05 46.2 1.9 19 1-19 9-27 (219)
460 3t15_A Ribulose bisphosphate c 84.9 0.31 1E-05 49.2 1.8 18 2-19 43-60 (293)
461 4dcu_A GTP-binding protein ENG 84.9 0.26 8.8E-06 53.1 1.3 51 114-168 89-140 (456)
462 4b4t_M 26S protease regulatory 84.9 0.32 1.1E-05 52.2 2.0 68 123-196 270-354 (434)
463 3th5_A RAS-related C3 botulinu 85.2 0.18 6.1E-06 47.3 0.0 18 1-18 36-53 (204)
464 4b4t_K 26S protease regulatory 84.7 0.33 1.1E-05 52.0 2.0 46 125-170 263-322 (428)
465 1puj_A YLQF, conserved hypothe 84.4 0.3 1E-05 49.2 1.4 19 1-19 126-144 (282)
466 1ofh_A ATP-dependent HSL prote 84.4 0.39 1.3E-05 47.9 2.3 19 1-19 56-74 (310)
467 4b4t_J 26S protease regulatory 84.4 0.35 1.2E-05 51.4 1.9 66 125-196 239-321 (405)
468 1p5z_B DCK, deoxycytidine kina 84.3 0.24 8E-06 49.0 0.6 18 2-19 31-48 (263)
469 3v9p_A DTMP kinase, thymidylat 84.3 0.29 9.8E-06 47.8 1.2 19 2-20 32-50 (227)
470 3exa_A TRNA delta(2)-isopenten 84.2 0.37 1.3E-05 49.4 2.0 19 1-19 9-27 (322)
471 4b4t_L 26S protease subunit RP 84.1 0.36 1.2E-05 51.8 2.0 68 123-196 270-354 (437)
472 3lv8_A DTMP kinase, thymidylat 84.0 0.35 1.2E-05 47.4 1.7 20 2-21 34-53 (236)
473 3eie_A Vacuolar protein sortin 84.0 0.4 1.4E-05 48.9 2.2 19 1-19 57-75 (322)
474 4tmk_A Protein (thymidylate ki 83.7 0.38 1.3E-05 46.4 1.8 20 2-21 10-29 (213)
475 3cmw_A Protein RECA, recombina 83.6 1.8 6E-05 53.9 8.0 69 119-187 451-553 (1706)
476 4hlc_A DTMP kinase, thymidylat 83.4 0.47 1.6E-05 45.4 2.3 19 2-20 9-27 (205)
477 3foz_A TRNA delta(2)-isopenten 83.3 0.41 1.4E-05 49.0 1.9 19 1-19 16-34 (316)
478 3tqf_A HPR(Ser) kinase; transf 83.3 0.39 1.3E-05 45.0 1.6 18 1-18 22-39 (181)
479 3ld9_A DTMP kinase, thymidylat 83.3 0.47 1.6E-05 46.2 2.2 19 2-20 28-46 (223)
480 3r7w_A Gtpase1, GTP-binding pr 83.2 0.43 1.5E-05 48.5 2.0 18 1-18 9-26 (307)
481 3ice_A Transcription terminati 83.0 0.39 1.3E-05 50.8 1.6 19 1-19 180-198 (422)
482 3tmk_A Thymidylate kinase; pho 82.8 0.43 1.5E-05 46.2 1.7 20 2-21 12-31 (216)
483 2x2e_A Dynamin-1; nitration, h 82.8 0.29 1E-05 50.7 0.6 19 1-19 37-55 (353)
484 1ko7_A HPR kinase/phosphatase; 82.7 0.36 1.2E-05 49.5 1.2 18 1-18 150-167 (314)
485 3pvs_A Replication-associated 82.4 0.47 1.6E-05 51.1 2.0 19 1-19 56-74 (447)
486 3hjn_A DTMP kinase, thymidylat 82.2 0.55 1.9E-05 44.5 2.2 20 2-21 7-26 (197)
487 1wxq_A GTP-binding protein; st 82.1 0.42 1.4E-05 50.6 1.5 41 84-133 181-221 (397)
488 1ypw_A Transitional endoplasmi 82.1 0.46 1.6E-05 55.1 1.9 19 1-19 517-535 (806)
489 3pfi_A Holliday junction ATP-d 82.1 0.53 1.8E-05 48.0 2.2 19 1-19 61-79 (338)
490 3ec1_A YQEH GTPase; atnos1, at 82.0 0.45 1.5E-05 49.8 1.7 18 1-18 168-185 (369)
491 3hws_A ATP-dependent CLP prote 82.0 0.54 1.9E-05 48.7 2.3 19 1-19 57-75 (363)
492 3geh_A MNME, tRNA modification 81.8 0.4 1.4E-05 51.9 1.2 19 1-19 230-248 (462)
493 3gmt_A Adenylate kinase; ssgci 81.7 0.53 1.8E-05 46.1 1.9 19 1-19 14-32 (230)
494 3p32_A Probable GTPase RV1496/ 81.7 0.47 1.6E-05 49.3 1.7 20 1-20 85-104 (355)
495 4b4t_H 26S protease regulatory 81.6 0.52 1.8E-05 50.8 2.0 68 123-196 298-382 (467)
496 3gj0_A GTP-binding nuclear pro 81.3 0.31 1.1E-05 46.3 0.1 18 1-18 21-39 (221)
497 1g41_A Heat shock protein HSLU 81.1 0.49 1.7E-05 50.8 1.6 21 1-21 56-76 (444)
498 2b8t_A Thymidine kinase; deoxy 81.0 2.6 8.7E-05 40.9 6.6 53 127-184 89-150 (223)
499 3co5_A Putative two-component 80.9 0.32 1.1E-05 43.4 0.0 42 127-169 75-116 (143)
500 2qp9_X Vacuolar protein sortin 80.9 0.62 2.1E-05 48.4 2.2 19 1-19 90-108 (355)
No 1
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-41 Score=341.00 Aligned_cols=185 Identities=29% Similarity=0.406 Sum_probs=160.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc---------ceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA---------YKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~---------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 71 (607)
+||||||||||||+|+|+++|+ +|+|.++|.++.... +++|||+|++.+++.+||+||+.+....+
T Consensus 37 iG~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLDKPT-----EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 6999999999999999999987 899999999875431 24999999999999999999999987654
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (607)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (607)
.....+.++..+++.++++.+||.+.. .++++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 187 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERF----ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGG----TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhh----hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 222345666778899999999996432 2456788999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 152 LRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 152 L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
|++++++ |+|||++||++. +...||++++|++|+++..+++++
T Consensus 188 l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 188 LKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEcChhh
Confidence 9999865 999999999975 457899999999999999998765
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.6e-42 Score=360.66 Aligned_cols=182 Identities=25% Similarity=0.373 Sum_probs=163.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------cceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------AYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 72 (607)
+||||||||||+|+|+|+++|+ +|+|.++|+++... ++++|||+|++.+++.+||+||+.+....+
T Consensus 60 iGpnGaGKSTLlr~i~GL~~p~-----~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~- 133 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLLERPT-----EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD- 133 (366)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-
T ss_pred EcCCCchHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc-
Confidence 6999999999999999999987 89999999987642 245999999999999999999999987754
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (607)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (607)
..++++.+++++++++.+||.+.+ ++++.+|||||||||+|||||+.+|++|||||||||||+.++..++++|
T Consensus 134 --~~~~~~~~~~v~~lL~~vgL~~~~-----~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL 206 (366)
T 3tui_C 134 --NTPKDEVKRRVTELLSLVGLGDKH-----DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206 (366)
T ss_dssp --CCCHHHHHHHHHHHHHHHTCGGGT-----TCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence 245677788999999999996554 4567899999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+++++ .|.|||++||++ ..+..+||||++|++|++++.|++++
T Consensus 207 ~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 207 KDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99975 599999999996 47888999999999999999998755
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2e-41 Score=360.25 Aligned_cols=182 Identities=30% Similarity=0.424 Sum_probs=164.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||||+|+|+++++ +|+|.++|+++... .+.+|||+|+..+++.+||+||+.|..+.+ ..+
T Consensus 35 lGpsGsGKSTLLr~iaGl~~p~-----~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~ 106 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGLETIT-----SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAK 106 (381)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCC
T ss_pred EcCCCchHHHHHHHHHcCCCCC-----CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCC
Confidence 6999999999999999999987 89999999987543 356999999999999999999999988764 346
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
+++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~-----~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~ 181 (381)
T 3rlf_A 107 KEVINQRVNQVAEVLQLAHLL-----DRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181 (381)
T ss_dssp HHHHHHHHHHHHHHTTCGGGT-----TCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhh-----cCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH
Confidence 777788999999999996544 457789999999999999999999999999999999999999999999999975
Q ss_pred -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.|.|+|++||+. .++..++|||++|++|+++..|++++
T Consensus 182 ~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 182 RLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 499999999996 57889999999999999999998765
No 4
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1e-41 Score=360.20 Aligned_cols=182 Identities=26% Similarity=0.425 Sum_probs=160.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC----CC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS----SN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 73 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~----~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~ 73 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++ .. .++++|||+|+..+++.+||+||+.|+...+
T Consensus 36 lGpsGsGKSTLLr~iaGl~~p~-----~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~-- 108 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGFEQPD-----SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG-- 108 (359)
T ss_dssp EESTTSSHHHHHHHHHTSSCCS-----EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS--
T ss_pred ECCCCchHHHHHHHHhcCCCCC-----CcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc--
Confidence 5999999999999999999987 89999999986 22 1356999999999999999999999976543
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (607)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (607)
..++++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+
T Consensus 109 -~~~~~~~~~~v~~~l~~~gL~~~~-----~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~ 182 (359)
T 3fvq_A 109 -KGRTAQERQRIEAMLELTGISELA-----GRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182 (359)
T ss_dssp -SCCSHHHHHHHHHHHHHHTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 234456677899999999996554 45678899999999999999999999999999999999999999999888
Q ss_pred HHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 154 QLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 154 ~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
++. +.|.|+|++||+. .++..+||||++|++|+++..|++++
T Consensus 183 ~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~i~~~g~~~e 225 (359)
T 3fvq_A 183 AALRANGKSAVFVSHDR-EEALQYADRIAVMKQGRILQTASPHE 225 (359)
T ss_dssp HHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCEEEEEeCHHH
Confidence 875 5799999999996 57888999999999999999998765
No 5
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=7.6e-41 Score=333.38 Aligned_cols=179 Identities=27% Similarity=0.368 Sum_probs=157.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------c-ceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------A-YKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~-~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 71 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++... + ++++||+|++.+++.+||+||+.+....+
T Consensus 36 iG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~ 110 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLLDAPT-----EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM 110 (224)
T ss_dssp EECTTSCHHHHHHHHTTSSCCS-----EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc
Confidence 5999999999999999999987 89999999987542 1 35999999999999999999999976543
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (607)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (607)
..+.++.+++++++++.+||.+..+ +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.
T Consensus 111 ---~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 111 ---GKPKKEAKERGEYLLSELGLGDKLS-----RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp ---TCCHHHHHHHHHHHHHHTTCTTCTT-----CCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHcCCchhhh-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 2344555678999999999976554 45678999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCC
Q 007344 152 LRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA 194 (607)
Q Consensus 152 L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~ 194 (607)
|++++++|+|||++||++. .+ ..||++++|++|++++.|+.
T Consensus 183 l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 183 FLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEeee
Confidence 9999877999999999964 45 78999999999999998863
No 6
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.8e-41 Score=345.12 Aligned_cols=182 Identities=28% Similarity=0.426 Sum_probs=159.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-------cceEEEEccCC-CCCCCCCHHHHHHHHHHccC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-------AYKFAYVRQED-LFFSQLTVRETLSLAAELQL 72 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-------~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~ 72 (607)
+||||||||||+|+|+|+++|+ +|+|.++|+++... ++++|||+|++ ..+..+||+||+.|.....
T Consensus 40 iGpnGsGKSTLl~~l~Gl~~p~-----~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~- 113 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGILKPS-----SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM- 113 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS-
T ss_pred ECCCCCCHHHHHHHHHcCCCCC-----CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc-
Confidence 6999999999999999999987 89999999987421 24699999986 2344789999999987643
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (607)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (607)
..+.++.+++++++++.+||.+..+ +++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|
T Consensus 114 --~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l 186 (275)
T 3gfo_A 114 --KLPEDEIRKRVDNALKRTGIEHLKD-----KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186 (275)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCchhhc-----CCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHH
Confidence 3456777788999999999965554 467789999999999999999999999999999999999999999999
Q ss_pred HHHH-hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 153 RQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 153 ~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
++++ ++|+|||++||++. .+..+||++++|++|++++.|++++
T Consensus 187 ~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~~g~~~~ 230 (275)
T 3gfo_A 187 VEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVILQGNPKE 230 (275)
T ss_dssp HHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9998 66999999999975 6778899999999999999998766
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-41 Score=341.41 Aligned_cols=182 Identities=29% Similarity=0.398 Sum_probs=158.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------------------ccceEEEEccCCCCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------------------KAYKFAYVRQEDLFFSQLTVRE 62 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------------------~~~~i~yv~Q~~~l~~~lTV~E 62 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++.. .++++|||+|++.+++.+||+|
T Consensus 38 iG~nGsGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e 112 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFLEKPS-----EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLE 112 (262)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHH
Confidence 5999999999999999999987 8999999998751 1235999999999999999999
Q ss_pred HHHHHH-HccCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 007344 63 TLSLAA-ELQLPEILSVEERDEYVNSLLFKLGLVSC-ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGL 140 (607)
Q Consensus 63 ~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGL 140 (607)
|+.++. ..+ ..+.++.+++++++++.+||.+. .+ +++.+|||||||||+||+||+.+|++|||||||+||
T Consensus 113 ~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~L 184 (262)
T 1b0u_A 113 NVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG-----KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 184 (262)
T ss_dssp HHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT-----SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTS
T ss_pred HHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 999864 332 23445556789999999999655 44 457789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 141 DAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 141 D~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
|+.++..+++.|++++++|+|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 185 D~~~~~~~~~~l~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (262)
T 1b0u_A 185 DPELVGEVLRIMQQLAEEGKTMVVVTHEM-GFARHVSSHVIFLHQGKIEEEGDPEQ 239 (262)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999987799999999996 46778899999999999999887654
No 8
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9.5e-41 Score=340.18 Aligned_cols=182 Identities=29% Similarity=0.421 Sum_probs=158.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC--Cc-----cceEEEEccCCCCCCCCCHHHHHHHHH-HccC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NK-----AYKFAYVRQEDLFFSQLTVRETLSLAA-ELQL 72 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~--~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~-~~~~ 72 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++. .. ++++|||+|++.+++.+||+||+.+.. ..+
T Consensus 56 iG~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~- 129 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLLEDFD-----EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR- 129 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS-
T ss_pred EcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc-
Confidence 5999999999999999999987 899999999874 11 235999999999999999999999864 332
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (607)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (607)
..+.++.+++++++++.+||.+..+ +++.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|
T Consensus 130 --~~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l 202 (263)
T 2olj_A 130 --KWPREKAEAKAMELLDKVGLKDKAH-----AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVM 202 (263)
T ss_dssp --CCCHHHHHHHHHHHHHHTTCGGGTT-----SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHCCCchHhc-----CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 2344555678999999999965544 467789999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
++++++|+|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 203 ~~l~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 245 (263)
T 2olj_A 203 KQLANEGMTMVVVTHEM-GFAREVGDRVLFMDGGYIIEEGKPED 245 (263)
T ss_dssp HHHHHTTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHhCCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99987799999999996 46778899999999999999887654
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-40 Score=352.30 Aligned_cols=182 Identities=29% Similarity=0.410 Sum_probs=162.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++... ++++|||+|+..+++.+||+||+.|..+.+ ..+
T Consensus 47 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~ 118 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGLERPT-----KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVP 118 (355)
T ss_dssp ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCC
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999987653 235
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
+++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+
T Consensus 119 ~~~~~~~v~~~l~~~gL~~~~-----~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 193 (355)
T 1z47_A 119 KDEMDARVRELLRFMRLESYA-----NRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD 193 (355)
T ss_dssp HHHHHHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHh-----cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 566778899999999996554 456788999999999999999999999999999999999999999999999975
Q ss_pred -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 194 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 232 (355)
T 1z47_A 194 EMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQFGTPEE 232 (355)
T ss_dssp HHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 499999999996 47888999999999999999998765
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.4e-40 Score=352.63 Aligned_cols=182 Identities=28% Similarity=0.425 Sum_probs=162.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++... .+++|||+|+..+++++||+||+.|..+.+ ..+
T Consensus 35 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~ 106 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGIYKPT-----SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAP 106 (362)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCC
T ss_pred ECCCCchHHHHHHHHhcCCCCC-----ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999987653 234
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
+++.+++++++++.+||.+..+ +++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~~-----r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (362)
T 2it1_A 107 REEIDKKVREVAKMLHIDKLLN-----RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181 (362)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTT-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHhh-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 5666788999999999976554 46778999999999999999999999999999999999999999999999975
Q ss_pred -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 182 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 182 ELGITTVYVTHDQ-AEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 499999999996 47788999999999999999998765
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.6e-40 Score=352.25 Aligned_cols=182 Identities=29% Similarity=0.438 Sum_probs=161.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 71 (607)
+||||||||||||+|+|+++++ +|+|.++|+++.. ..+++|||+|+..+++++||+||+.|..+.+
T Consensus 35 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGLEEPS-----RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred ECCCCcHHHHHHHHHHcCCCCC-----ccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 5999999999999999999987 8999999987633 2356999999999999999999999987654
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 007344 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA 151 (607)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~ 151 (607)
..++++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.
T Consensus 110 ---~~~~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 181 (372)
T 1g29_1 110 ---KVPRQEIDQRVREVAELLGLTELL-----NRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAE 181 (372)
T ss_dssp ---TCCHHHHHHHHHHHHHHHTCGGGT-----TCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHHHHHCCCchHh-----cCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence 234566778899999999996554 456788999999999999999999999999999999999999999999
Q ss_pred HHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 152 LRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 152 L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
|+++.+ .|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 182 l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 182 LKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 999975 499999999996 57888999999999999999998765
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-40 Score=352.68 Aligned_cols=182 Identities=29% Similarity=0.392 Sum_probs=160.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++... .+++|||+|+..+++++||+||+.|..+.+ ..+
T Consensus 35 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~ 106 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGIYKPT-----SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RIS 106 (359)
T ss_dssp ECSTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSH
T ss_pred EcCCCchHHHHHHHHHCCCCCC-----ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999976432 233
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
+++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus 107 ~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 181 (359)
T 2yyz_A 107 KDEVEKRVVEIARKLLIDNLL-----DRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ 181 (359)
T ss_dssp HHHTTHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH
Confidence 455567899999999996554 456788999999999999999999999999999999999999999999999975
Q ss_pred -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 182 ~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 182 ELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 499999999996 47788999999999999999998765
No 13
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.3e-41 Score=339.50 Aligned_cols=185 Identities=28% Similarity=0.380 Sum_probs=158.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHc-cCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAEL-QLP 73 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~-~~~ 73 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++... ++++|||+|++.+++.+||+||+.+.... +..
T Consensus 39 iG~nGsGKSTLlk~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 113 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFLKAD-----EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGES 113 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSC
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccC
Confidence 5999999999999999999987 89999999987542 23599999999999999999999986532 111
Q ss_pred C---------CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHH
Q 007344 74 E---------ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQ 144 (607)
Q Consensus 74 ~---------~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~ 144 (607)
. ....++.+++++++++.+||.+..+ ++++.|||||||||+||++|+.+|++|+|||||+|||+.+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~ 188 (257)
T 1g6h_A 114 PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGL 188 (257)
T ss_dssp HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHH
T ss_pred cccccccccccCCHHHHHHHHHHHHHHcCCchhhC-----CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 0 0122345567899999999965554 4567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 145 AEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 145 ~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+..+++.|++++++|+|||+++|++. .+...||++++|++|++++.|++++
T Consensus 189 ~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 189 AHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999878999999999975 6678899999999999999987654
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-40 Score=336.10 Aligned_cols=182 Identities=31% Similarity=0.442 Sum_probs=159.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 76 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++... ++++|||+|++.+++.+||+||+.+....+ ..
T Consensus 47 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~ 118 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTLIKPS-----SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---AS 118 (256)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CC
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CC
Confidence 5999999999999999999887 89999999987542 245999999999999999999999976543 12
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (607)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (607)
+.++.+++++++++.+||.+..+ ++++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 119 ~~~~~~~~~~~~l~~~gL~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 119 SSSEIEEMVERATEIAGLGEKIK-----DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGGG-----SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCchHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 34455567899999999976554 4567899999999999999999999999999999999999999999999998
Q ss_pred hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
++|+|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 194 ~~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 232 (256)
T 1vpl_A 194 QEGLTILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEE 232 (256)
T ss_dssp HTTCEEEEEECCH-HHHTTTCSEEEEEETTEEEEEEEHHH
T ss_pred hCCCEEEEEcCCH-HHHHHHCCEEEEEECCEEEEecCHHH
Confidence 7899999999996 46777899999999999999887654
No 15
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-40 Score=335.26 Aligned_cols=180 Identities=26% Similarity=0.455 Sum_probs=156.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++.. .++++|||+|++.+++.+||+||+.+....+ .
T Consensus 30 iG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~ 99 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGIVKPD-----RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----E 99 (240)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----C
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----C
Confidence 5999999999999999999887 8999999998743 2346999999999999999999998864321 1
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
....+++++++++.+||.+..+ +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~ 174 (240)
T 2onk_A 100 RVERDRRVREMAEKLGIAHLLD-----RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR 174 (240)
T ss_dssp HHHHHHHHHHHHHTTTCTTTTT-----CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCHHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 2223567899999999976554 45678999999999999999999999999999999999999999999999975
Q ss_pred -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+|+|||++||++ .++...||++++|++|++++.|++++
T Consensus 175 ~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~ 213 (240)
T 2onk_A 175 EFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 499999999996 46778899999999999999987654
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.5e-40 Score=351.94 Aligned_cols=182 Identities=28% Similarity=0.431 Sum_probs=161.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC--------ccceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--------KAYKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~--------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 72 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++.. .++++|||+|+..+++.+||+||+.|..+.+
T Consensus 37 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~- 110 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGLDVPS-----TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM- 110 (353)
T ss_dssp ECSCHHHHHHHHHHHHTSSCCS-----EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS-
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc-
Confidence 5999999999999999999987 8999999987632 2356999999999999999999999976543
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344 73 PEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (607)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (607)
..++++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|
T Consensus 111 --~~~~~~~~~~v~~~l~~~~L~~~~-----~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 183 (353)
T 1oxx_K 111 --KMSKEEIRKRVEEVAKILDIHHVL-----NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183 (353)
T ss_dssp --SCCHHHHHHHHHHHHHHTTCGGGT-----TSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHHHcCCchHh-----cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 235566778899999999996554 4567889999999999999999999999999999999999999999999
Q ss_pred HHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 153 RQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 153 ~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+++.+ .|+|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 184 ~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 227 (353)
T 1oxx_K 184 KEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPED 227 (353)
T ss_dssp HHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99975 499999999996 47888999999999999999998765
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.2e-40 Score=352.38 Aligned_cols=182 Identities=24% Similarity=0.364 Sum_probs=155.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||||+|+|+++++ +|+|.++|+++... .+++|||+|+..+++++||+||+.|..+.+ ..+
T Consensus 43 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~ 114 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGLEEPT-----EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFP 114 (372)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCC
T ss_pred ECCCCChHHHHHHHHHcCCCCC-----ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCC
Confidence 5999999999999999999987 89999999987542 356999999999999999999999875432 245
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
+++.+++++++++.+||.+.. ++++++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.+
T Consensus 115 ~~~~~~~v~~~l~~~~L~~~~-----~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~ 189 (372)
T 1v43_A 115 KDEIDKRVRWAAELLQIEELL-----NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 189 (372)
T ss_dssp HHHHHHHHHHHHHHTTCGGGT-----TSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhHh-----cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH
Confidence 566778899999999996554 456789999999999999999999999999999999999999999999999975
Q ss_pred c-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 158 D-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 158 ~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+ |.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 190 ~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 190 KLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred hCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 4 99999999996 47788999999999999999998765
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.9e-40 Score=348.73 Aligned_cols=179 Identities=27% Similarity=0.458 Sum_probs=158.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++... ++++|||+|+..+++.+||+||+.|....+. .+
T Consensus 32 lGpnGsGKSTLLr~iaGl~~p~-----~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~ 103 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGFHVPD-----SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IK 103 (348)
T ss_dssp ECCCTHHHHHHHHHHHTSSCCS-----EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CC
T ss_pred ECCCCccHHHHHHHHHcCCCCC-----CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CC
Confidence 5999999999999999999987 89999999987543 3469999999999999999999999876432 11
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
++ ++++++++.+||.+..| +++++|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+
T Consensus 104 ~~---~~v~~~l~~~~L~~~~~-----~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~ 175 (348)
T 3d31_A 104 DP---KRVLDTARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK 175 (348)
T ss_dssp CH---HHHHHHHHHTTCTTTTT-----SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH
Confidence 12 67899999999976554 46778999999999999999999999999999999999999999999999975
Q ss_pred -cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 158 -DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 158 -~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.|.|+|++||++ .++..++|++++|++|+++..|++++
T Consensus 176 ~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 176 KNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEEECHHH
T ss_pred hcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEECCHHH
Confidence 599999999996 47788999999999999999998765
No 19
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3e-40 Score=332.43 Aligned_cols=181 Identities=27% Similarity=0.390 Sum_probs=155.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 74 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++... ++++|||+|++.+++.+||+||+.+.....
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--- 109 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGLVRAQ-----KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR--- 109 (240)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC---
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC---
Confidence 5999999999999999999887 89999999987542 124999999999999999999998864211
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344 75 ILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (607)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (607)
...++.+++++++++.++ |.+.. +++++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+
T Consensus 110 -~~~~~~~~~~~~~l~~~~~l~~~~-----~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 183 (240)
T 1ji0_A 110 -KDKEGIKRDLEWIFSLFPRLKERL-----KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp -CCSSHHHHHHHHHHHHCHHHHTTT-----TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHcccHhhHh-----cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 122344567888999994 86544 34677899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+++++|+|||++||++. .+...||++++|++|++++.|++++
T Consensus 184 ~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 184 KINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99878999999999964 6778899999999999999887654
No 20
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=4.4e-40 Score=335.98 Aligned_cols=180 Identities=29% Similarity=0.465 Sum_probs=157.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|+++++ +|+|.++|+++... .+.++|++|++.+++.+||+||+.+.....
T Consensus 43 iG~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---- 113 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYLSPS-----HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY---- 113 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSSCCS-----SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS----
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc----
Confidence 6999999999999999999987 89999999998653 235999999999888899999999876432
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA------SPSVIYADEPTTGLDAFQAEKVM 149 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~------~p~illLDEPtsGLD~~~~~~i~ 149 (607)
...+.+++++++++.+||.+..+. .+++|||||||||+|||||+. +|++|||||||+|||+.++..++
T Consensus 114 -~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~ 187 (266)
T 4g1u_C 114 -GGSQDRQALQQVMAQTDCLALAQR-----DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTL 187 (266)
T ss_dssp -CSTTHHHHHHHHHHHTTCSTTTTS-----BGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHH
Confidence 112345678999999999766544 567899999999999999999 99999999999999999999999
Q ss_pred HHHHHHHhc-CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 150 EALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 150 ~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+.|++++++ |+|||++||++ ..+..+||++++|++|++++.|++++
T Consensus 188 ~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl~~G~i~~~g~~~~ 234 (266)
T 4g1u_C 188 RLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLLAQGKLVACGTPEE 234 (266)
T ss_dssp HHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999865 57999999996 46778899999999999999998765
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.5e-39 Score=332.21 Aligned_cols=181 Identities=27% Similarity=0.368 Sum_probs=154.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||||+|+|+++|+ +|+|.++|.++... ++++|||+|++ ..++.+||+||+.+..... .+
T Consensus 39 iG~nGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~ 109 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGLIEPT-----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YP 109 (266)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CT
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CC
Confidence 5999999999999999999887 89999999987532 34699999995 5667789999999864321 11
Q ss_pred HHHHHHHHHHHHHHcCCC--ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344 78 VEERDEYVNSLLFKLGLV--SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~--~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (607)
.++.+++++++++.+||. +..+ +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 110 DRDPVPLVKKAMEFVGLDFDSFKD-----RVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp TSCSHHHHHHHHHHTTCCHHHHTT-----CCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCccccc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 122345688999999996 5544 456789999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+++|+|||++||++. .+..+||++++|++|++++.|++++
T Consensus 185 ~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 224 (266)
T 2yz2_A 185 KTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRME 224 (266)
T ss_dssp HHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHHH
T ss_pred HHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 877999999999975 5667899999999999999887654
No 22
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.5e-39 Score=325.14 Aligned_cols=184 Identities=25% Similarity=0.314 Sum_probs=148.9
Q ss_pred CCCCCCcHHHHHHHHHcC--cCCCCCCccceEEEECCeeCCCcc------ceEEEEccCCCCCCCCCHHHHHHHHHHccC
Q 007344 1 MGPSGSGKTTLLNVLAGQ--LMASPRLHLSGLLEVNGKPSSNKA------YKFAYVRQEDLFFSQLTVRETLSLAAELQL 72 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~--~~~~~~~~~~G~I~~~G~~~~~~~------~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~ 72 (607)
+||||||||||+|+|+|+ .+|+ +|+|.++|+++.... ..++||+|++.+++.+||+||+.+......
T Consensus 35 ~G~nGsGKSTLlk~l~Gl~~~~p~-----~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGDPEYTVE-----RGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKL 109 (250)
T ss_dssp ECSTTSSHHHHHHHHHTCTTCEEE-----EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCC-----ceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhc
Confidence 599999999999999998 5565 899999999875421 238999999999999999999998653211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCCC-CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344 73 PEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVRG-ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (607)
Q Consensus 73 ~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~-LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~ 150 (607)
.......+..++++++++.+||. +..| +++.. |||||||||+||++|+.+|++|+|||||+|||+.++..+++
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~ 184 (250)
T 2d2e_A 110 GREVGVAEFWTKVKKALELLDWDESYLS-----RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184 (250)
T ss_dssp TSCCCHHHHHHHHHHHHHHHTCCGGGGG-----SBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCCChhHhc-----CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 11123344556789999999993 4444 45667 99999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEecCChhHHHhh-hcceeeecCCeeeeeCCCC
Q 007344 151 ALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPAR 195 (607)
Q Consensus 151 ~L~~la~~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~iv~~G~~~ 195 (607)
.|++++++|+|||++||++. .+... ||++++|++|++++.|+++
T Consensus 185 ~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 185 GVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999877999999999975 55566 5999999999999988754
No 23
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4.2e-38 Score=321.67 Aligned_cols=185 Identities=25% Similarity=0.306 Sum_probs=153.9
Q ss_pred CCCCCCcHHHHHHHHHcCc--CCCCCCccceEEEECCeeCCCc------cceEEEEccCCCCCCCCCHHHHHHHHHH-cc
Q 007344 1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGLLEVNGKPSSNK------AYKFAYVRQEDLFFSQLTVRETLSLAAE-LQ 71 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~--~~~~~~~~~G~I~~~G~~~~~~------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~-~~ 71 (607)
+||||||||||||+|+|+. +++ +|+|.++|+++... +..++||+|++.+++.+||.|++.+... .+
T Consensus 52 ~G~NGsGKSTLlk~l~Gl~~~~p~-----~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~ 126 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGREDYEVT-----GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVR 126 (267)
T ss_dssp ECCTTSSHHHHHHHHHTCTTCEEE-----EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCC-----CeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhh
Confidence 5999999999999999984 444 89999999987532 1239999999999999999999987542 11
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCcCC-CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344 72 ---LPEILSVEERDEYVNSLLFKLGLV-SCADSNVGDAKVR-GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (607)
Q Consensus 72 ---~~~~~~~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~-~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~ 146 (607)
.....+.++.+++++++++.+||. +.. ++++. +|||||||||+||+||+.+|++|||||||+|||+.++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~ 201 (267)
T 2zu0_C 127 SYRGQETLDRFDFQDLMEEKIALLKMPEDLL-----TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALK 201 (267)
T ss_dssp HGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT-----TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHH
T ss_pred hhhccccCCHHHHHHHHHHHHHHcCCChhHh-----cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 111234455567899999999995 333 34555 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCeEEEEecCChhHHHhh-hcceeeecCCeeeeeCCCCC
Q 007344 147 KVMEALRQLAQDGHTVICSIHQPRGSVYFK-FDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 147 ~i~~~L~~la~~g~tvi~~~H~p~~~i~~~-~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+++.|++++++|+|||++||++. .+... ||++++|++|++++.|++++
T Consensus 202 ~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~~~ 251 (267)
T 2zu0_C 202 VVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSGDFTL 251 (267)
T ss_dssp HHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEETTEEEEEECTTH
T ss_pred HHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEECCEEEEEcCHHH
Confidence 999999999877999999999975 45554 89999999999999998765
No 24
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.4e-39 Score=329.52 Aligned_cols=185 Identities=28% Similarity=0.360 Sum_probs=151.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC--Cc-----cceEEEEccCCCC--CCCCCHHHHHHHHHHcc
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NK-----AYKFAYVRQEDLF--FSQLTVRETLSLAAELQ 71 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~--~~-----~~~i~yv~Q~~~l--~~~lTV~E~l~~~~~~~ 71 (607)
+||||||||||||+|+|+++|+ +|+|.++|+++. .. ++++|||+|++.+ .+.+||+||+.++....
T Consensus 53 iG~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~ 127 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYEPAT-----SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKS 127 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---
T ss_pred ECCCCCcHHHHHHHHhCCCCCC-----CeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhc
Confidence 5999999999999999999987 899999998875 21 2459999998754 34579999998753211
Q ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344 72 LP-EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (607)
Q Consensus 72 ~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~ 150 (607)
.. .....++.+++++++++.+||.+..+ +++..|||||||||+||+||+.+|++|||||||+|||+.++..+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~ 202 (279)
T 2ihy_A 128 IGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-----QYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202 (279)
T ss_dssp ------CCHHHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred cccccCCcHHHHHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH
Confidence 00 00112334567899999999966554 4567899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeE--EEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 151 ALRQLAQDGHTV--ICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 151 ~L~~la~~g~tv--i~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.|++++++|+|| |++||++. .+...||++++|++|++++.|++++
T Consensus 203 ~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 249 (279)
T 2ihy_A 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQQGAVED 249 (279)
T ss_dssp HHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 999998779999 99999964 6678899999999999999887644
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.3e-38 Score=319.06 Aligned_cols=176 Identities=27% Similarity=0.375 Sum_probs=152.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||||+|+|++++ . |+|.++|+++... +++++||+|++.+++.+||+||+.+... ..
T Consensus 32 iG~NGsGKSTLlk~l~Gl~~p-----~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~- 101 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGMTSG-----K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK- 101 (249)
T ss_dssp ECCTTSSHHHHHHHHTTSSCC-----E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-
T ss_pred ECCCCCcHHHHHHHHhCCCCC-----C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-
Confidence 599999999999999999875 3 9999999987432 2459999999999999999999987521 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC-------eEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS-------VIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~-------illLDEPtsGLD~~~~~~i 148 (607)
.+ +++++++++.+||.+..+ +.+.+|||||||||+||++|+.+|+ +|+|||||+|||+.++..+
T Consensus 102 ~~----~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l 172 (249)
T 2qi9_C 102 TR----TELLNDVAGALALDDKLG-----RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSAL 172 (249)
T ss_dssp TC----HHHHHHHHHHTTCGGGTT-----SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHH
T ss_pred Cc----HHHHHHHHHHcCChhHhc-----CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHH
Confidence 12 456889999999976554 4567899999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.|++++++|+|||+++|++. .+...+|++++|++|++++.|++++
T Consensus 173 ~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 219 (249)
T 2qi9_C 173 DKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLASGRREE 219 (249)
T ss_dssp HHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999877999999999964 6778899999999999998887544
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.3e-38 Score=317.85 Aligned_cols=176 Identities=26% Similarity=0.322 Sum_probs=149.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCC-CCCCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP-EILSVE 79 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~ 79 (607)
+||||||||||||+|+|+++|+ +|+|.+ .+++|||+|++.+++.+||+||+.+....... ......
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~--------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~ 103 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGIHRPI-----QGKIEV--------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKS 103 (253)
T ss_dssp ECCSSSSHHHHHHHHTTSSCCS-----EEEEEE--------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCH
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEE--------eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCH
Confidence 5999999999999999999987 899982 34699999999999899999999986532211 001123
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-
Q 007344 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD- 158 (607)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~- 158 (607)
+.+++++++++.+||.+..+ +.+.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~-----~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~ 178 (253)
T 2nq2_C 104 HDYQVAMQALDYLNLTHLAK-----REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178 (253)
T ss_dssp HHHHHHHHHHHHTTCGGGTT-----SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCChHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 34567899999999976554 456789999999999999999999999999999999999999999999999876
Q ss_pred CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
|+|||+++|++ ..+...||++++|++|+ ++.|++++
T Consensus 179 g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~g~~~~ 214 (253)
T 2nq2_C 179 NMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKFGETRN 214 (253)
T ss_dssp CCEEEEEESCH-HHHHHHCSEEEEEETTE-EEEEEHHH
T ss_pred CCEEEEEecCH-HHHHHhCCEEEEEeCCe-EecCCHHH
Confidence 99999999996 46778899999999999 88886544
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=4.1e-38 Score=318.11 Aligned_cols=178 Identities=25% Similarity=0.397 Sum_probs=148.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||||+|+|+++|+ +|+|.++|.++... ++++|||+|++.+++ .||+||+.+... .
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~ 109 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFYIPE-----NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----G 109 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----T
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----C
Confidence 5999999999999999999987 89999999987542 235999999998887 599999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccc------cCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSCADSNV------GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~d~~v------g~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~ 149 (607)
.+ +++++++++.+++.+..+... -++.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..++
T Consensus 110 ~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~ 185 (247)
T 2ff7_A 110 MS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185 (247)
T ss_dssp CC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHH
T ss_pred CC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 12 234667777788765443221 13457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus 186 ~~l~~~~-~g~tviivtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 229 (247)
T 2ff7_A 186 RNMHKIC-KGRTVIIIAHRLS-TV-KNADRIIVMEKGKIVEQGKHKE 229 (247)
T ss_dssp HHHHHHH-TTSEEEEECSSGG-GG-TTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHc-CCCEEEEEeCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 9999995 5999999999975 44 4599999999999999987654
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.2e-38 Score=323.15 Aligned_cols=179 Identities=25% Similarity=0.376 Sum_probs=147.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||||+|+|+++|+ +|+|.++|.++... +++++||+|++.+++ .||+||+.+.....
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---- 120 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLYQPT-----GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---- 120 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS-----EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----
Confidence 5999999999999999999987 89999999987542 235999999998887 59999998853211
Q ss_pred CCHHH-----HHHHHHHHHHHc--CCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEE-----RDEYVNSLLFKL--GLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~-----~~~~v~~~l~~l--gL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
...++ ....++++++.+ ||.+.. ++.+.+|||||||||+|||||+.+|++|||||||+|||+.++..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-----~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 195 (271)
T 2ixe_A 121 PTMEEITAVAMESGAHDFISGFPQGYDTEV-----GETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRV 195 (271)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHSTTGGGSBC-----CGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred ChHHHHHHHHHHHhHHHHHHhhhcchhhhh-----cCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 11111 122356778877 664433 345778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
++.|+++++ +|+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus 196 ~~~l~~~~~~~g~tviivtHd~~-~~~-~~d~v~~l~~G~i~~~g~~~~ 242 (271)
T 2ixe_A 196 QRLLYESPEWASRTVLLITQQLS-LAE-RAHHILFLKEGSVCEQGTHLQ 242 (271)
T ss_dssp HHHHHHCTTTTTSEEEEECSCHH-HHT-TCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhhcCCEEEEEeCCHH-HHH-hCCEEEEEECCEEEEECCHHH
Confidence 999999864 5899999999975 444 599999999999999887654
No 29
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.6e-38 Score=310.28 Aligned_cols=170 Identities=22% Similarity=0.306 Sum_probs=144.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||||+|+|+++|+ +|+|.++|.++...+++++||+|++.+++.+||+||+.+....+.. . .+
T Consensus 41 iG~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~ 111 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTYLKPL-----KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN 111 (214)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH
Confidence 5999999999999999999887 8999999988753345699999999999999999999987654311 1 11
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (607)
+++++++++.+||.+. ++++.+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+
T Consensus 112 -~~~~~~~l~~~gl~~~------~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~ 184 (214)
T 1sgw_A 112 -KNEIMDALESVEVLDL------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 184 (214)
T ss_dssp -HHHHHHHHHHTTCCCT------TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHcCCCcC------CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 3568889999999644 446778999999999999999999999999999999999999999999999987799
Q ss_pred eEEEEecCChhHHHhhhcceeeecCCee
Q 007344 161 TVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (607)
Q Consensus 161 tvi~~~H~p~~~i~~~~D~v~lL~~G~i 188 (607)
|||++||++. .+...+|+++++ +|++
T Consensus 185 tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 185 IVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp EEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred EEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999975 567778887766 4443
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.8e-37 Score=322.07 Aligned_cols=177 Identities=26% Similarity=0.423 Sum_probs=146.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|+++|+ +|+|.++|.++... ++++|||+|++.+|+ .||+||+.++...
T Consensus 86 vG~sGsGKSTLl~ll~gl~~p~-----~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~----- 154 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRFYDIS-----SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT----- 154 (306)
T ss_dssp ESSSCHHHHHHHHHHTTSSCCS-----EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----
T ss_pred ECCCCchHHHHHHHHHcCCCCC-----CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----
Confidence 6999999999999999999987 89999999998654 245999999999986 5999999886421
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
...+ .++++++..++.+ -.++.++ +...+|||||||||+|||||+.+|+||||||||+|||+.++..+
T Consensus 155 ~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i 229 (306)
T 3nh6_A 155 AGND----EVEAAAQAAGIHDAIMAFPEGYRTQVG-ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229 (306)
T ss_dssp CCHH----HHHHHHHHHTCHHHHHHSTTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHH
T ss_pred CCHH----HHHHHHHHhCcHHHHHhccchhhhHhc-CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 2222 2344444444432 2345554 35778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.|+++.+ ++|+|+++|+++ .+.. ||+|++|++|++++.|++++
T Consensus 230 ~~~l~~l~~-~~Tvi~itH~l~-~~~~-aD~i~vl~~G~iv~~G~~~e 274 (306)
T 3nh6_A 230 QASLAKVCA-NRTTIVVAHRLS-TVVN-ADQILVIKDGCIVERGRHEA 274 (306)
T ss_dssp HHHHHHHHT-TSEEEEECCSHH-HHHT-CSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHcC-CCEEEEEEcChH-HHHc-CCEEEEEECCEEEEECCHHH
Confidence 999999864 789999999975 4554 99999999999999998765
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=9.4e-38 Score=314.80 Aligned_cols=179 Identities=26% Similarity=0.425 Sum_probs=150.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||||+|+|+++|+ +|+|.++|.++... +++++||+|++.+++ .||+||+.+... + .
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~ 103 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFYQPT-----AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-D 103 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-C
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-C
Confidence 5999999999999999999887 89999999987432 345999999998887 499999987521 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccc------cCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSCADSNV------GDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~d~~v------g~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~ 149 (607)
.. +++++++++.+++.+..+... -++.++.|||||||||+|||+|+.+|++|+|||||+|||+.++..++
T Consensus 104 ~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~ 179 (243)
T 1mv5_A 104 YT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179 (243)
T ss_dssp SC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHH
T ss_pred CC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 22 234678889999977655431 13457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+.|++++ +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus 180 ~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~~~~ 223 (243)
T 1mv5_A 180 KALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHNE 223 (243)
T ss_dssp HHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHHH
T ss_pred HHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCCHHH
Confidence 9999997 6999999999975 44 4599999999999998887654
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.2e-37 Score=314.13 Aligned_cols=172 Identities=23% Similarity=0.317 Sum_probs=148.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC--ccceEE-EEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN--KAYKFA-YVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~--~~~~i~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||||+|+|++ |+ +|+|.++|.++.. .+++++ ||+|++.+ .+||+||+.+....+ ..
T Consensus 36 ~G~NGsGKSTLlk~l~Gl~-p~-----~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~- 103 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGLL-PY-----SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL- 103 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS-CC-----EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC-
T ss_pred ECCCCCCHHHHHHHHhCCC-CC-----CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch-
Confidence 5999999999999999999 87 8999999987642 234699 99999887 789999999876543 11
Q ss_pred HHHHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344 78 VEERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (607)
.+++++++++.+||. +..+ +++++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++
T Consensus 104 ---~~~~~~~~l~~~gl~~~~~~-----~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 104 ---DRDLFLEMLKALKLGEEILR-----RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp ---CHHHHHHHHHHTTCCGGGGG-----SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC
T ss_pred ---HHHHHHHHHHHcCCChhHhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc
Confidence 134688899999996 5544 4567899999999999999999999999999999999999999999999985
Q ss_pred hcCCeEEEEecCChhHHHhhhc-ceeeecCCeeeeeCCCCC
Q 007344 157 QDGHTVICSIHQPRGSVYFKFD-DIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 157 ~~g~tvi~~~H~p~~~i~~~~D-~v~lL~~G~iv~~G~~~~ 196 (607)
+ |||++||++. .+...|| ++++|++|++++.|++++
T Consensus 176 ~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~ 212 (263)
T 2pjz_A 176 K---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSE 212 (263)
T ss_dssp S---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHH
T ss_pred C---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHH
Confidence 4 9999999964 5678899 999999999999987655
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.3e-36 Score=309.35 Aligned_cols=176 Identities=27% Similarity=0.379 Sum_probs=144.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||||+|+|++++ +|+|.++|.++... +++++||+|++.+++ .||+||+.++.. .
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~~~------~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~ 119 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRFYDA------EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----D 119 (260)
T ss_dssp ECSTTSSHHHHHHHHTTSSCC------EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----T
T ss_pred ECCCCCCHHHHHHHHhccCCC------CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----C
Confidence 599999999999999999863 69999999987542 245999999998886 599999987421 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc-------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
... +.+.++++.+++.+. .|+.++ +++..|||||||||+|||+|+.+|++|+|||||+|||+.++..+
T Consensus 120 ~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i 194 (260)
T 2ghi_A 120 ATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLF 194 (260)
T ss_dssp CCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHH
T ss_pred CCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 122 235566666666432 333333 45789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
++.|+++++ |+|||+++|++. .+ ..||++++|++|+++..|++++
T Consensus 195 ~~~l~~l~~-~~tviivtH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 239 (260)
T 2ghi_A 195 QKAVEDLRK-NRTLIIIAHRLS-TI-SSAESIILLNKGKIVEKGTHKD 239 (260)
T ss_dssp HHHHHHHTT-TSEEEEECSSGG-GS-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 999999965 899999999975 34 4599999999999999887654
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=6.2e-36 Score=298.89 Aligned_cols=168 Identities=24% Similarity=0.377 Sum_probs=135.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||||+|+|+++|+ +|+|.++| +++||+|++.+++. ||+||+.++.. ....
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g--------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~- 98 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGELEPS-----EGKIKHSG--------RISFCSQFSWIMPG-TIKENIIFGVS------YDEY- 98 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----EEEEEECS--------CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH-
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-----ccEEEECC--------EEEEEecCCcccCC-CHHHHhhccCC------cChH-
Confidence 5999999999999999999987 89999998 49999999998886 99999987531 1111
Q ss_pred HHHHHHHHHHHcCCCccc-------cccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-H
Q 007344 81 RDEYVNSLLFKLGLVSCA-------DSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEA-L 152 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~-L 152 (607)
++++.++.+++.+.. ++.++ +.+..|||||||||+|||+|+.+|++++|||||+|||+.++..+++. +
T Consensus 99 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 174 (229)
T 2pze_A 99 ---RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174 (229)
T ss_dssp ---HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCC
T ss_pred ---HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHH
Confidence 123344444543222 22222 34689999999999999999999999999999999999999999997 4
Q ss_pred HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+++. +|+|||+++|++. .+. .||++++|++|++++.|++++
T Consensus 175 ~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~g~~~~ 215 (229)
T 2pze_A 175 CKLM-ANKTRILVTSKME-HLK-KADKILILHEGSSYFYGTFSE 215 (229)
T ss_dssp CCCT-TTSEEEEECCCHH-HHH-HCSEEEEEETTEEEEEECHHH
T ss_pred HHhh-CCCEEEEEcCChH-HHH-hCCEEEEEECCEEEEECCHHH
Confidence 5654 4899999999974 454 599999999999999987654
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.8e-36 Score=300.61 Aligned_cols=171 Identities=25% Similarity=0.409 Sum_probs=134.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||||+|+|+++|+ +|+|.++| +++||+|++.+ +.+||+||+.+.... ..+.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g--------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~~ 96 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEMDKV-----EGHVAIKG--------SVAYVPQQAWI-QNDSLRENILFGCQL------EEPY 96 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCSEEE-----EEEEEECS--------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTTH
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CceEEECC--------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHHH
Confidence 5999999999999999999886 89999998 49999999865 578999999875321 1111
Q ss_pred HHHHHHH---HHHHcCCCcc-ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH---
Q 007344 81 RDEYVNS---LLFKLGLVSC-ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR--- 153 (607)
Q Consensus 81 ~~~~v~~---~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~--- 153 (607)
. +.+.+ +.+.+++.+. .++.+ ++++.+|||||||||+|||+|+.+|++|+|||||+|||+.++..+++.|+
T Consensus 97 ~-~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~ 174 (237)
T 2cbz_A 97 Y-RSVIQACALLPDLEILPSGDRTEI-GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPK 174 (237)
T ss_dssp H-HHHHHHTTCHHHHTTSTTGGGSEE-STTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTT
T ss_pred H-HHHHHHHhhHHHHHhccccccccc-cCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHH
Confidence 1 11111 2223333211 11222 35688999999999999999999999999999999999999999999995
Q ss_pred HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+++ +|+|||+++|++.. + ..||++++|++|++++.|++++
T Consensus 175 ~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 214 (237)
T 2cbz_A 175 GML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQE 214 (237)
T ss_dssp STT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHH
T ss_pred hhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHH
Confidence 443 58999999999864 4 4699999999999999887654
No 36
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-36 Score=324.20 Aligned_cols=176 Identities=24% Similarity=0.336 Sum_probs=145.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||||+|+|+++ + +|+|.++|+++... ++.+|||+|+..+|+ +||+||+.+.. .
T Consensus 53 lGpsGsGKSTLLr~iaGl~~-~-----~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~ 119 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRLLN-T-----EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------A 119 (390)
T ss_dssp EESTTSSHHHHHHHHHTCSE-E-----EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------C
T ss_pred ECCCCChHHHHHHHHhCCCC-C-----CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------c
Confidence 59999999999999999986 5 79999999987653 246999999999998 59999986321 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccC------CcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSCADSNVGD------AKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~------~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~ 149 (607)
.. ++++.++++.++|.+..+..... .....|||||||||+|||||+.+|++|||||||||||+.++.++.
T Consensus 120 ~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~ 195 (390)
T 3gd7_A 120 HS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIR 195 (390)
T ss_dssp SC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHH
T ss_pred cC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH
Confidence 12 34577899999997655433211 122339999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 150 EALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+.|+++. +|+|+|+++|+.. ....||||++|++|+++..|++++
T Consensus 196 ~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 196 RTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQYDSILE 239 (390)
T ss_dssp HHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEESSHHH
T ss_pred HHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 9999864 4799999999963 345699999999999999998765
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=7e-35 Score=329.71 Aligned_cols=180 Identities=29% Similarity=0.446 Sum_probs=151.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|+++|+ +|+|.+||+++.+. ++++|||+|++.+++. ||+||+.++...+ ..
T Consensus 376 vG~sGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~ 447 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRLYDPA-----SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SS 447 (595)
T ss_dssp ECCTTSSSTHHHHHHTTSSCCS-----EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TT
T ss_pred ECCCCCCHHHHHHHHhcCcCCC-----CcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cc
Confidence 5999999999999999999987 89999999998653 2459999999999875 9999999853211 01
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
.+ +++++++++.+++.+ ..|+.+|+ ...+||||||||++|||||+++|++|+|||||+|||+.++..+
T Consensus 448 ~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~-~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i 522 (595)
T 2yl4_A 448 VT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGE-KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLV 522 (595)
T ss_dssp SC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSS-SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHH
T ss_pred cC----HHHHHHHHHHcCCHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHH
Confidence 22 244677777777643 34666654 4689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.|+++.+ |+|+|+++|+++ .+ ..||++++|++|++++.|++++
T Consensus 523 ~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 567 (595)
T 2yl4_A 523 QEALDRLMD-GRTVLVIAHRLS-TI-KNANMVAVLDQGKITEYGKHEE 567 (595)
T ss_dssp HHHHHHHHT-TSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECSCC
T ss_pred HHHHHHHhc-CCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 999999976 899999999975 44 4599999999999999999877
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=9e-35 Score=328.04 Aligned_cols=178 Identities=26% Similarity=0.436 Sum_probs=149.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|+++|+ +|+|.+||.++.+. ++++|||+|++.+++. ||+||+.++.. + .
T Consensus 375 vG~sGsGKSTll~~l~g~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~ 444 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFYDVD-----SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-E 444 (582)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----CCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-C
Confidence 6999999999999999999987 89999999987542 3469999999999985 99999988531 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcc-------ccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSC-------ADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~-------~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
.+ +++++++++.+++.+. .||.+|+ ...+||||||||++|||||+++|++|+|||||+|||+.++..+
T Consensus 445 ~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b5x_A 445 YT----REQIEQAARQAHAMEFIENMPQGLDTVIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAI 519 (582)
T ss_pred CC----HHHHHHHHHHCCCHHHHHhCcccccchhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 22 2346667777776533 3455554 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.|+++.+ |+|+|+++|+++ .+ ..||++++|++|++++.|++++
T Consensus 520 ~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b5x_A 520 QAALDELQK-NKTVLVIAHRLS-TI-EQADEILVVDEGEIIERGRHAD 564 (582)
T ss_pred HHHHHHHcC-CCEEEEEecCHH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 999999865 899999999975 44 4699999999999999998765
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1e-34 Score=327.55 Aligned_cols=178 Identities=24% Similarity=0.362 Sum_probs=150.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|+++|+ +|+|.+||.++.+. ++++|||+|++.+++. ||+||+.++.. + .
T Consensus 375 vG~sGsGKSTLl~~l~g~~~p~-----~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~ 444 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRFYDID-----EGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-E 444 (582)
T ss_dssp EECTTSSHHHHHHHHTTTTCCS-----EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-C
T ss_pred ECCCCCCHHHHHHHHhhccCCC-----CCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-C
Confidence 5999999999999999999987 89999999998653 2459999999999985 99999988531 1 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCc-------cccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVS-------CADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~-------~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
.+. ++++++++.+++.+ -.|+.+|+ ...+||||||||++|||||+++|++++|||||||||+.++..+
T Consensus 445 ~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i 519 (582)
T 3b60_A 445 YSR----EQIEEAARMAYAMDFINKMDNGLDTIIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519 (582)
T ss_dssp CCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHH
T ss_pred CCH----HHHHHHHHHcCCHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHH
Confidence 222 34666777777653 23555654 5789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.++++.+ |+|+|+++|+++ .+ ..||++++|++|++++.|++++
T Consensus 520 ~~~l~~~~~-~~tvi~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b60_A 520 QAALDELQK-NRTSLVIAHRLS-TI-EQADEIVVVEDGIIVERGTHSE 564 (582)
T ss_dssp HHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhC-CCEEEEEeccHH-HH-HhCCEEEEEECCEEEEecCHHH
Confidence 999999875 899999999975 34 4699999999999999998655
No 40
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-34 Score=326.66 Aligned_cols=177 Identities=28% Similarity=0.424 Sum_probs=145.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|+++|+ +|+|.+||.++.+. +++++||+|++.+++. ||+||+.++.. .
T Consensus 375 vG~sGsGKSTll~~l~g~~~~~-----~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~ 443 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLIDPE-----RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----D 443 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSSCCS-----EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----S
T ss_pred ECCCCCCHHHHHHHHhCCccCC-----CcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----C
Confidence 5999999999999999999987 89999999988653 2459999999999976 99999987531 1
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
.+.++ +.+.++..++ .+-.|+.+++ ...+||||||||++|||||+++|++|+||||||+||+.++..+
T Consensus 444 ~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~-~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i 518 (587)
T 3qf4_A 444 ATDDE----IVEAAKIAQIHDFIISLPEGYDSRVER-GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518 (587)
T ss_dssp CCHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS-SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHH
T ss_pred CCHHH----HHHHHHHhCcHHHHHhcccchhhHhcC-CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 23322 2223333332 2234566654 6789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.|+++. +|+|+|+++|+++ .+ ..||+|++|++|++++.|++++
T Consensus 519 ~~~l~~~~-~~~tvi~itH~l~-~~-~~~d~i~vl~~G~i~~~g~~~e 563 (587)
T 3qf4_A 519 LDGLKRYT-KGCTTFIITQKIP-TA-LLADKILVLHEGKVAGFGTHKE 563 (587)
T ss_dssp HHHHHHHS-TTCEEEEEESCHH-HH-TTSSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHhC-CCCEEEEEecChH-HH-HhCCEEEEEECCEEEEECCHHH
Confidence 99999985 5899999999975 34 5799999999999999998766
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.4e-34 Score=326.13 Aligned_cols=177 Identities=29% Similarity=0.441 Sum_probs=147.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|+++|+ +|+|.+||.++++. ++++|||+|++.+++. ||+||+.++.. .
T Consensus 373 vG~sGsGKSTll~~l~g~~~p~-----~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~ 441 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRFYDVT-----SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----T 441 (578)
T ss_dssp ECSTTSSHHHHHTTTTTSSCCS-----EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----S
T ss_pred ECCCCChHHHHHHHHhcCCCCC-----CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----C
Confidence 5999999999999999999987 89999999988653 2459999999999987 99999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
.+.+ .+.+.++..++. +-.||.+|+ ...+||||||||++|||||+++|++++|||||||||+.++..+
T Consensus 442 ~~~~----~~~~~~~~~~~~~~~~~lp~g~~t~~~~-~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i 516 (578)
T 4a82_A 442 ATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 516 (578)
T ss_dssp CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH
T ss_pred CCHH----HHHHHHHHhCcHHHHHhCcchhhhhhcc-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 2222 244444444432 334566654 5778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.++++. +|+|+|+++|+++. + ..||++++|++|++++.|++++
T Consensus 517 ~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~e 561 (578)
T 4a82_A 517 QEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHRE 561 (578)
T ss_dssp HHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence 99999985 47899999999863 4 4599999999999999998765
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-34 Score=327.23 Aligned_cols=177 Identities=25% Similarity=0.378 Sum_probs=145.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|+++|+ +|+|.+||.++.+. ++++|||+|++.+++. ||+||+.++.. .
T Consensus 387 vG~sGsGKSTll~~l~g~~~p~-----~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~ 455 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFYDVD-----RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNP-----G 455 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSSCCS-----EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSST-----T
T ss_pred ECCCCCcHHHHHHHHhcCcCCC-----CeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCC-----C
Confidence 5999999999999999999987 89999999998653 2459999999999875 99999987521 1
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLV-------SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~-------~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
.+.+ .+.+.++..++. +-.|+.+|+ ...+||||||||++|||||+++|++|+|||||||||+.++..+
T Consensus 456 ~~~~----~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i 530 (598)
T 3qf4_B 456 ATDE----EIKEAAKLTHSDHFIKHLPEGYETVLTD-NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530 (598)
T ss_dssp CCTT----HHHHHTTTTTCHHHHHTSTTGGGCBCHH-HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHH
T ss_pred CCHH----HHHHHHHHhCCHHHHHhccccccchhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 1222 233444444432 233455543 4578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.|+++. +|+|+|+++|+++ .+. .||+|++|++|++++.|++++
T Consensus 531 ~~~l~~~~-~~~t~i~itH~l~-~~~-~~d~i~~l~~G~i~~~g~~~~ 575 (598)
T 3qf4_B 531 QAAMWKLM-EGKTSIIIAHRLN-TIK-NADLIIVLRDGEIVEMGKHDE 575 (598)
T ss_dssp HHHHHHHH-TTSEEEEESCCTT-HHH-HCSEEEEECSSSEEECSCHHH
T ss_pred HHHHHHHc-CCCEEEEEecCHH-HHH-cCCEEEEEECCEEEEECCHHH
Confidence 99999985 5899999999986 444 499999999999999998765
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.8e-34 Score=295.34 Aligned_cols=167 Identities=24% Similarity=0.376 Sum_probs=132.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||||+|+|+++|+ +|+|.++| +++||+|++.+++. ||+||+. .. . ....
T Consensus 70 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~I~~~g--------~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~~- 127 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGELEPS-----EGKIKHSG--------RISFCSQNSWIMPG-TIKENII-GV--S----YDEY- 127 (290)
T ss_dssp EESTTSSHHHHHHHHTTSSCEE-----EEEEECCS--------CEEEECSSCCCCSS-BHHHHHH-TT--C----CCHH-
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CcEEEECC--------EEEEEeCCCccCcc-cHHHHhh-Cc--c----cchH-
Confidence 5999999999999999999886 89999998 49999999988885 9999997 32 1 1111
Q ss_pred HHHHHHHHHHHcCCCccc-------cccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-
Q 007344 81 RDEYVNSLLFKLGLVSCA-------DSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEAL- 152 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~-------d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L- 152 (607)
.+++.++.+++.+.. ++.++ +.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.+
T Consensus 128 ---~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll 203 (290)
T 2bbs_A 128 ---RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203 (290)
T ss_dssp ---HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCC
T ss_pred ---HHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 233444555553221 12222 346799999999999999999999999999999999999999999974
Q ss_pred HHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 153 RQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 153 ~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
++++ +|+|||+++|++. .+ ..||++++|++|++++.|++++
T Consensus 204 ~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~~~ 244 (290)
T 2bbs_A 204 CKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTFSE 244 (290)
T ss_dssp CCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECHHH
T ss_pred HHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCHHH
Confidence 5554 4899999999974 44 4599999999999999998755
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=2.1e-32 Score=333.50 Aligned_cols=179 Identities=26% Similarity=0.435 Sum_probs=151.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+++|.|+++|+ +|+|.+||.++++. +++++||||++.+|+. |++|||.|+.. |..
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~p~-----~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~ 1181 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYDTL-----GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSS 1181 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSCCS-----SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTT
T ss_pred ECCCCChHHHHHHHHhcCccCC-----CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCC
Confidence 5999999999999999999987 89999999998764 3569999999999987 99999987632 223
Q ss_pred CCHHHHHHHHHHHHHHcCC-------CccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGL-------VSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL-------~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
.+.++ +.++++..++ .+-.||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...|
T Consensus 1182 ~sd~e----i~~Al~~a~l~~~I~~Lp~GldT~vge-~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~I 1256 (1321)
T 4f4c_A 1182 VTMAQ----VEEAARLANIHNFIAELPEGFETRVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256 (1321)
T ss_dssp SCHHH----HHHHHHHTTCHHHHHTSTTTTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHH
T ss_pred CCHHH----HHHHHHHhCChHHHHcCcCCCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHH
Confidence 34433 4445555443 4556888886 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.|+++. +|+|+|+++|.++ ....||+|++|++|++++.|++++
T Consensus 1257 q~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1257 QEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVSNGTIIEKGTHTQ 1301 (1321)
T ss_dssp HHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEESSSSEEEEECHHH
T ss_pred HHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEECCEEEEECCHHH
Confidence 99998865 4899999999975 345689999999999999999876
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1.5e-31 Score=301.59 Aligned_cols=170 Identities=29% Similarity=0.375 Sum_probs=145.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||||+|+|+++|+ +|+|.+ ..++||++|+....+.+||.|++....... ..
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~I~~--------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~ 447 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVEEPT-----EGKVEW--------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LN 447 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----BSCCCC--------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HH
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----ceEEEE--------eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CC
Confidence 5999999999999999999887 788875 246999999988778899999887641110 01
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG 159 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g 159 (607)
..++++++++.+||.+.++ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++ ++|
T Consensus 448 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g 522 (607)
T 3bk7_A 448 SNFYKTELLKPLGIIDLYD-----RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 522 (607)
T ss_dssp CHHHHHHTHHHHTCTTTTT-----SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCchHhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 1356788999999975554 4567899999999999999999999999999999999999999999999997 569
Q ss_pred CeEEEEecCChhHHHhhhcceeeecC--CeeeeeCCCCC
Q 007344 160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARD 196 (607)
Q Consensus 160 ~tvi~~~H~p~~~i~~~~D~v~lL~~--G~iv~~G~~~~ 196 (607)
+|||+++||. ..+..+|||+++|++ |+++..|++++
T Consensus 523 ~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 523 KTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 9999999996 577888999999985 88888999877
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.6e-31 Score=298.19 Aligned_cols=170 Identities=31% Similarity=0.389 Sum_probs=144.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||||+|+|+.+++ +|+|.+ ..++|||+|+....+.+||.|++........ .
T Consensus 318 ~G~NGsGKSTLlk~l~Gl~~p~-----~G~i~~--------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~ 377 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGVEEPT-----EGKIEW--------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------N 377 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS-----BCCCCC--------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------T
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEE--------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------C
Confidence 5999999999999999999887 788875 2369999999877788999998865411110 0
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG 159 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g 159 (607)
..++++++++.+|+.+.. ++.+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++ +.|
T Consensus 378 ~~~~~~~~l~~~~l~~~~-----~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g 452 (538)
T 1yqt_A 378 SNFYKTELLKPLGIIDLY-----DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE 452 (538)
T ss_dssp CHHHHHHTTTTTTCGGGT-----TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChhhh-----cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC
Confidence 124578899999996544 44677899999999999999999999999999999999999999999999997 569
Q ss_pred CeEEEEecCChhHHHhhhcceeeecC--CeeeeeCCCCC
Q 007344 160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARD 196 (607)
Q Consensus 160 ~tvi~~~H~p~~~i~~~~D~v~lL~~--G~iv~~G~~~~ 196 (607)
.|||+++||. ..+..+|||+++|++ |+++..|++++
T Consensus 453 ~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 453 KTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999995 578889999999985 78888999877
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=1.3e-31 Score=326.59 Aligned_cols=177 Identities=30% Similarity=0.417 Sum_probs=151.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCcc-----ceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKA-----YKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~-----~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+++|.|.+++. +|+|.+||.++++.. +++|||+|++.+|+. |++||+.|+.. .
T Consensus 450 vG~sGsGKSTll~ll~~~~~~~-----~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~ 518 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRYYDVL-----KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----G 518 (1321)
T ss_dssp EECSSSCHHHHHHHHTTSSCCS-----EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----T
T ss_pred EecCCCcHHHHHHHhccccccc-----cCcccCCCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----c
Confidence 5999999999999999999987 899999999987652 469999999999986 99999998631 2
Q ss_pred CCHHHHHHHHHHHHHHcC-------CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLG-------LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
.+.++ +.++++..+ |.+-.||.+|+ ....||||||||++||||++++|+||+||||||+||+.+...+
T Consensus 519 ~~~~~----v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i 593 (1321)
T 4f4c_A 519 ITREE----MVAACKMANAEKFIKTLPNGYNTLVGD-RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593 (1321)
T ss_dssp CCHHH----HHHHHHHTTCHHHHHHSTTTTSSEESS-SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHH
T ss_pred chHHH----HHHHHHHccchhHHHcCCCCCccEecC-CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHH
Confidence 33333 334444333 34566899986 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.|+++.+ |+|+|+++|+++ ....+|+|++|++|++++.|+.++
T Consensus 594 ~~~l~~~~~-~~T~iiiaHrls--~i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 594 QQALDKAAK-GRTTIIIAHRLS--TIRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHT-TSEEEEECSCTT--TTTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhC-CCEEEEEcccHH--HHHhCCEEEEeeCCeeeccCCHHH
Confidence 999998764 899999999975 456799999999999999998766
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=4.3e-31 Score=294.26 Aligned_cols=172 Identities=23% Similarity=0.303 Sum_probs=142.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||+|+|+|+++|+ +|+|.++| ..++|++|+......+||+|++.+..... .. .
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~~-------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~--~ 361 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEITAD-----EGSVTPEK-------QILSYKPQRIFPNYDGTVQQYLENASKDA----LS--T 361 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS-----BCCEESSC-------CCEEEECSSCCCCCSSBHHHHHHHHCSST----TC--T
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CcEEEECC-------eeeEeechhcccccCCCHHHHHHHhhhhc----cc--h
Confidence 5999999999999999999987 89998764 35899999877666889999998742211 11 1
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cC
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-DG 159 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-~g 159 (607)
....++++++.+||.+..+ +.+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|
T Consensus 362 ~~~~~~~~l~~~~l~~~~~-----~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g 436 (538)
T 3ozx_A 362 SSWFFEEVTKRLNLHRLLE-----SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERK 436 (538)
T ss_dssp TSHHHHHTTTTTTGGGCTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCHHHhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 1235788899999965544 46778999999999999999999999999999999999999999999999975 58
Q ss_pred CeEEEEecCChhHHHhhhcceeeecC--CeeeeeCCCCC
Q 007344 160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARD 196 (607)
Q Consensus 160 ~tvi~~~H~p~~~i~~~~D~v~lL~~--G~iv~~G~~~~ 196 (607)
.|||+++||. .++..+||||++|++ |.....+++.+
T Consensus 437 ~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~~~~~~ 474 (538)
T 3ozx_A 437 AVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLATSPVT 474 (538)
T ss_dssp CEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccCCChHH
Confidence 9999999996 578889999999986 55555666544
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=2.2e-31 Score=323.68 Aligned_cols=179 Identities=27% Similarity=0.426 Sum_probs=147.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+++|+|.++|+ +|+|.++|.++... ++++|||+|++.+++. ||+||+.++.. .
T Consensus 422 vG~sGsGKSTl~~ll~g~~~~~-----~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~ 490 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRLYDPL-----DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----D 490 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTSSCCS-----EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----S
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----C
Confidence 5999999999999999999987 89999999987653 2459999999999986 99999998742 2
Q ss_pred CCHHHHHHHH-----HHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH
Q 007344 76 LSVEERDEYV-----NSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVME 150 (607)
Q Consensus 76 ~~~~~~~~~v-----~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~ 150 (607)
.+.++..+.. .+.++.+ .+..||.+|+ ...+||||||||++|||||+++|+||+||||||+||+.+...+.+
T Consensus 491 ~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~~~~-~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 491 VTMDEIEKAVKEANAYDFIMKL--PHQFDTLVGE-RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHS--TTGGGCCCSS-SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcHHHHHhc--cccccccccC-CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 2333332222 2233333 3345677765 577899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 151 ALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 151 ~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.++++. +|+|+|+++|+++ .+ ..+|+|++|++|++++.|+.++
T Consensus 568 ~l~~~~-~~~t~i~itH~l~-~i-~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 568 ALDKAR-EGRTTIVIAHRLS-TV-RNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHH-TTSEEEEECSCHH-HH-TTCSEEEECSSSCCCCEECHHH
T ss_pred HHHHHc-CCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 998865 5899999999964 45 4599999999999999998765
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=3.4e-31 Score=322.07 Aligned_cols=179 Identities=28% Similarity=0.431 Sum_probs=147.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+++|+|+++|+ +|+|.+||.+++.. +++++||+|++.+++ .||+||+.++... ..
T Consensus 1065 vG~sGsGKSTl~~~l~g~~~p~-----~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~ 1135 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERFYDPM-----AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RV 1135 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTSSCCS-----EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CC
T ss_pred ECCCCCCHHHHHHHHhcCcCCC-----CCEEEECCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CC
Confidence 5999999999999999999987 89999999988653 346999999998886 5999999875321 12
Q ss_pred CCHHHHHHHHHHHHHHcC-------CCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLG-------LVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lg-------L~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
.+.++.. +.++..+ +.+..||.+|+ ....|||||||||+|||+|+++|+||+|||||+|||+.+...+
T Consensus 1136 ~~~~~i~----~~~~~~~~~~~i~~l~~gldt~vge-~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i 1210 (1284)
T 3g5u_A 1136 VSYEEIV----RAAKEANIHQFIDSLPDKYNTRVGD-KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210 (1284)
T ss_dssp CCHHHHH----HHHHHHTCHHHHSSTTTGGGCBCST-TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHH
T ss_pred CCHHHHH----HHHHHhCcHHHHHhCccccccccCC-CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2333332 2233222 34456777775 5778999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.|+++ .+|+|+|+++|+++ .+ ..||||++|++|++++.|++++
T Consensus 1211 ~~~l~~~-~~~~tvi~isH~l~-~i-~~~dri~vl~~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1211 QEALDKA-REGRTCIVIAHRLS-TI-QNADLIVVIQNGKVKEHGTHQQ 1255 (1284)
T ss_dssp HHHHHHH-SSSSCEEEECSCTT-GG-GSCSEEEEEETBEEEEEECHHH
T ss_pred HHHHHHh-CCCCEEEEEecCHH-HH-HcCCEEEEEECCEEEEECCHHH
Confidence 9999885 45899999999976 45 5599999999999999998765
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-30 Score=292.53 Aligned_cols=171 Identities=23% Similarity=0.280 Sum_probs=142.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||||+|+|+++|+ +|+. . ....++|++|+.......||+|++... .+. ....
T Consensus 384 iG~NGsGKSTLlk~l~Gl~~p~-----~G~~------~--~~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~-~~~~--- 444 (608)
T 3j16_B 384 MGENGTGKTTLIKLLAGALKPD-----EGQD------I--PKLNVSMKPQKIAPKFPGTVRQLFFKK--IRG-QFLN--- 444 (608)
T ss_dssp ESCTTSSHHHHHHHHHTSSCCS-----BCCC------C--CSCCEEEECSSCCCCCCSBHHHHHHHH--CSS-TTTS---
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CCcC------c--cCCcEEEecccccccCCccHHHHHHHH--hhc-cccc---
Confidence 5999999999999999999987 6652 1 134599999997666667999987542 221 1111
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcC
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDG 159 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g 159 (607)
.+.++++++.++|.+.++ +.+..|||||||||+||++|+.+|++|+|||||+|||+.++..++++|++++ +.|
T Consensus 445 -~~~~~~~l~~l~l~~~~~-----~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g 518 (608)
T 3j16_B 445 -PQFQTDVVKPLRIDDIID-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK 518 (608)
T ss_dssp -HHHHHHTHHHHTSTTTSS-----SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHcCChhhhc-----CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 235678999999976554 4677899999999999999999999999999999999999999999999986 569
Q ss_pred CeEEEEecCChhHHHhhhcceeeecC--CeeeeeCCCCCc
Q 007344 160 HTVICSIHQPRGSVYFKFDDIVLLTE--GKLVYAGPARDE 197 (607)
Q Consensus 160 ~tvi~~~H~p~~~i~~~~D~v~lL~~--G~iv~~G~~~~~ 197 (607)
.|||+++||. .++..++||+++|++ |+++..|++++.
T Consensus 519 ~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~~~ 557 (608)
T 3j16_B 519 KTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPESL 557 (608)
T ss_dssp CEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCEEH
T ss_pred CEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChHHH
Confidence 9999999996 578888999999986 999999999873
No 52
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=4.1e-30 Score=286.84 Aligned_cols=164 Identities=25% Similarity=0.352 Sum_probs=132.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEE---------EECCeeCCC-------ccceEEEEccCCCCCCC---CCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL---------EVNGKPSSN-------KAYKFAYVRQEDLFFSQ---LTVR 61 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I---------~~~G~~~~~-------~~~~i~yv~Q~~~l~~~---lTV~ 61 (607)
+||||||||||||+|+|.++|+ +|++ .++|.+... ....+++++|+...++. .||.
T Consensus 53 vG~NGaGKSTLlk~l~Gl~~p~-----~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~ 127 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQLIPN-----LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI 127 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCC-----TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHH
Confidence 6999999999999999999887 5653 356654321 12358899987543332 3899
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 007344 62 ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD 141 (607)
Q Consensus 62 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD 141 (607)
|++.... ..++++++++.+||.+..+ +.+.+|||||||||+||++|+.+|++|||||||+|||
T Consensus 128 e~~~~~~------------~~~~~~~~l~~lgl~~~~~-----~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD 190 (538)
T 1yqt_A 128 ELLKKAD------------ETGKLEEVVKALELENVLE-----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190 (538)
T ss_dssp HHHHHHC------------SSSCHHHHHHHTTCTTTTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred HHHhhhh------------HHHHHHHHHHHcCCChhhh-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 9875310 1134788999999965544 4567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344 142 AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (607)
Q Consensus 142 ~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 187 (607)
+.++..+++.|++++++|.|||+++|+. ..+..+||++++|++|.
T Consensus 191 ~~~~~~l~~~L~~l~~~g~tvi~vsHd~-~~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 191 IRQRLNAARAIRRLSEEGKSVLVVEHDL-AVLDYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCcc
Confidence 9999999999999988899999999995 57888999999998653
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=4e-30 Score=290.06 Aligned_cols=164 Identities=27% Similarity=0.372 Sum_probs=131.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEE---------EECCeeCCC-------ccceEEEEccCCCCCC---CCCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL---------EVNGKPSSN-------KAYKFAYVRQEDLFFS---QLTVR 61 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I---------~~~G~~~~~-------~~~~i~yv~Q~~~l~~---~lTV~ 61 (607)
+||||||||||||+|+|+++|+ +|++ .++|.++.. ....+++++|.....+ ..||.
T Consensus 123 iG~NGsGKSTLlkiL~Gll~p~-----~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~ 197 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQLIPN-----LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVR 197 (607)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCC-----TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHH
T ss_pred ECCCCChHHHHHHHHhCCCCCC-----CCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHH
Confidence 6999999999999999999887 5654 345654321 1234789988743322 13999
Q ss_pred HHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 007344 62 ETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD 141 (607)
Q Consensus 62 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD 141 (607)
|++... . ..++++++++.+||.+..| +.+++|||||||||+||++|+.+|++|||||||+|||
T Consensus 198 e~l~~~------~------~~~~~~~~L~~lgL~~~~~-----~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD 260 (607)
T 3bk7_A 198 ELLKKV------D------EVGKFEEVVKELELENVLD-----RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260 (607)
T ss_dssp HHHHHT------C------CSSCHHHHHHHTTCTTGGG-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCC
T ss_pred HHhhhh------H------HHHHHHHHHHHcCCCchhC-----CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 998531 0 0134778999999976554 4567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344 142 AFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (607)
Q Consensus 142 ~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 187 (607)
+.++..+++.|++++++|.|||+++|++ ..+..++|++++|+++.
T Consensus 261 ~~~~~~l~~~L~~l~~~g~tvIivsHdl-~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 261 IRQRLKVARVIRRLANEGKAVLVVEHDL-AVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHHhhCCEEEEECCCc
Confidence 9999999999999988899999999995 47788899999998653
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=2.6e-29 Score=287.92 Aligned_cols=189 Identities=24% Similarity=0.346 Sum_probs=120.2
Q ss_pred CCCCCCcHHHHH---------------------HHHHcCcCCCCCC--ccceEEEECCeeCCCc-cceEEEEccCCCC--
Q 007344 1 MGPSGSGKTTLL---------------------NVLAGQLMASPRL--HLSGLLEVNGKPSSNK-AYKFAYVRQEDLF-- 54 (607)
Q Consensus 1 lGpsGsGKSTLL---------------------~~LaG~~~~~~~~--~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l-- 54 (607)
+||||||||||+ ++++|+..++.+. ...|.|.++|.+.... ...+|+|+|...+
T Consensus 50 iGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~ 129 (670)
T 3ux8_A 50 TGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLR 129 (670)
T ss_dssp ECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-----CCBHHHHTTCC----
T ss_pred ECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhhccchhceeeeechhhhHH
Confidence 699999999998 8888887765210 1246677877654332 2345666654332
Q ss_pred -----------------CCCCCHHHHHHHHHHccCCCCCCH------HHHHHHHHHHHHHcCCCccccccccCCcCCCCC
Q 007344 55 -----------------FSQLTVRETLSLAAELQLPEILSV------EERDEYVNSLLFKLGLVSCADSNVGDAKVRGIS 111 (607)
Q Consensus 55 -----------------~~~lTV~E~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LS 111 (607)
++.+||+||+.+............ ++..++ .++++.+||.+. ..++++..||
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~gL~~~----~~~~~~~~LS 204 (670)
T 3ux8_A 130 LLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR-LGFLQNVGLDYL----TLSRSAGTLS 204 (670)
T ss_dssp ---------------------CC--------------------------CHHH-HHHHHHTTCTTC----CTTCBGGGSC
T ss_pred HHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH-HHHHHHcCCchh----hhcCCcccCC
Confidence 456899999987543221110000 011111 245888999643 1244677899
Q ss_pred HHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------
Q 007344 112 GGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------ 183 (607)
Q Consensus 112 GGerqRvsIa~aL~~~p~--illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------ 183 (607)
|||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+++|++. .+ ..||++++|
T Consensus 205 GGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~ii~l~~g~~~ 282 (670)
T 3ux8_A 205 GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGI 282 (670)
T ss_dssp HHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHH-HH-HHCSEEEEECSSSGG
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HH-hhCCEEEEecccccc
Confidence 999999999999999998 99999999999999999999999999988999999999975 44 459999999
Q ss_pred cCCeeeeeCCCCC
Q 007344 184 TEGKLVYAGPARD 196 (607)
Q Consensus 184 ~~G~iv~~G~~~~ 196 (607)
++|++++.|++++
T Consensus 283 ~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 283 HGGEVVAAGTPEE 295 (670)
T ss_dssp GCCSEEEEECHHH
T ss_pred cCCEEEEecCHHH
Confidence 8999999998765
No 55
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.95 E-value=7.4e-29 Score=276.22 Aligned_cols=165 Identities=27% Similarity=0.327 Sum_probs=129.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEE-----------EECCeeCCC-------ccceEEEEccC----CCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL-----------EVNGKPSSN-------KAYKFAYVRQE----DLFFSQL 58 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I-----------~~~G~~~~~-------~~~~i~yv~Q~----~~l~~~l 58 (607)
+||||||||||||+|+|.++|+ +|+| .++|.++.. ....+..+.|. +.++. .
T Consensus 31 iGpNGaGKSTLlkiL~Gl~~p~-----~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 104 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGEIIPN-----FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLK-G 104 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCC-----TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCC-S
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhhcc-C
Confidence 6999999999999999999887 6776 566665421 11124444443 33333 3
Q ss_pred CHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 007344 59 TVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138 (607)
Q Consensus 59 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts 138 (607)
||+|++.... .+++++++++.+|+.+..| +.++.|||||||||+||+||+.+|++|+|||||+
T Consensus 105 ~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~-----~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts 167 (538)
T 3ozx_A 105 TVNEILTKID------------ERGKKDEVKELLNMTNLWN-----KDANILSGGGLQRLLVAASLLREADVYIFDQPSS 167 (538)
T ss_dssp BHHHHHHHHC------------CSSCHHHHHHHTTCGGGTT-----SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred cHHHHhhcch------------hHHHHHHHHHHcCCchhhc-----CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 8888654210 1134678899999966554 4567899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeee
Q 007344 139 GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (607)
Q Consensus 139 GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~ 190 (607)
|||+.++..+.+.|+++++ |+|||+++|+. ..+..+||+|++|++|..++
T Consensus 168 ~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 168 YLDVRERMNMAKAIRELLK-NKYVIVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp TCCHHHHHHHHHHHHHHCT-TSEEEEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred cCCHHHHHHHHHHHHHHhC-CCEEEEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 9999999999999999976 99999999996 57888999999998765443
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.95 E-value=6.7e-28 Score=276.24 Aligned_cols=125 Identities=28% Similarity=0.419 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC---CeEEE
Q 007344 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYA 133 (607)
Q Consensus 57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p---~illL 133 (607)
.+||.||+.+.... . ..+++.+.++.+||... ..++++..|||||||||+|||+|+.+| ++|+|
T Consensus 504 ~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~----~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llll 570 (670)
T 3ux8_A 504 DMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYM----KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 570 (670)
T ss_dssp TSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTS----BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEE
T ss_pred hCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchh----hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 47999999875321 1 12345678888998531 224567899999999999999999887 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344 134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (607)
Q Consensus 134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (607)
||||+|||+.++..++++|++++++|+|||+++|++. .+ ..||+|++| ++|++++.|++++
T Consensus 571 DEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~ 637 (670)
T 3ux8_A 571 DEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEE 637 (670)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence 9999999999999999999999988999999999975 44 679999999 8999999998765
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=9.4e-28 Score=280.15 Aligned_cols=163 Identities=25% Similarity=0.347 Sum_probs=133.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCC-CCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQED-LFFSQLTVRETLSLAAELQLPEILSVE 79 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~ 79 (607)
+||||||||||||+|+| |+| +|.+... ..+++|++|+. .+++.+||.|++.+ ... ..
T Consensus 467 iGpNGsGKSTLLk~Lag-----------G~i--~g~~~~~-~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~--- 524 (986)
T 2iw3_A 467 CGPNGCGKSTLMRAIAN-----------GQV--DGFPTQE-ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT--- 524 (986)
T ss_dssp ECSTTSSHHHHHHHHHH-----------TCS--TTCCCTT-TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC---
T ss_pred ECCCCCCHHHHHHHHhC-----------CCc--CCCcccc-ceeEEEEcccccccccCCcHHHHHHH--hhc---CH---
Confidence 59999999999999995 111 3333211 23478999984 67889999999976 111 11
Q ss_pred HHHHHHHHHHHHcCCC-ccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344 80 ERDEYVNSLLFKLGLV-SCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (607)
Q Consensus 80 ~~~~~v~~~l~~lgL~-~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (607)
+++++++++.+||. +..+ +++++|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .
T Consensus 525 --~~~v~~~L~~lgL~~~~~~-----~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~ 594 (986)
T 2iw3_A 525 --KEAIKDKLIEFGFTDEMIA-----MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---C 594 (986)
T ss_dssp --HHHHHHHHHHTTCCHHHHH-----SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---S
T ss_pred --HHHHHHHHHHcCCChhhhc-----CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---C
Confidence 45688999999994 3333 45678999999999999999999999999999999999999999999988 5
Q ss_pred CCeEEEEecCChhHHHhhhcceeeecCCeee-eeCCCCC
Q 007344 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLV-YAGPARD 196 (607)
Q Consensus 159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv-~~G~~~~ 196 (607)
|.|||+++|+. ..+...||++++|++|+++ +.|+.++
T Consensus 595 g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~G~~~e 632 (986)
T 2iw3_A 595 GITSITISHDS-VFLDNVCEYIINYEGLKLRKYKGNFTE 632 (986)
T ss_dssp CSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEESCHHH
T ss_pred CCEEEEEECCH-HHHHHhCCEEEEEECCeeecCCCCHHH
Confidence 89999999995 5788899999999999997 6887654
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=4e-28 Score=283.24 Aligned_cols=175 Identities=27% Similarity=0.403 Sum_probs=133.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCC----CCCCCHHHHHHHHHHcc-----
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLF----FSQLTVRETLSLAAELQ----- 71 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l----~~~lTV~E~l~~~~~~~----- 71 (607)
+||||||||||||+|+|+++|+ +|+|.++|. .+++|++|+... ....|++|++.+.....
T Consensus 705 iGpNGSGKSTLLklLaGll~P~-----sG~I~~~~~------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~ 773 (986)
T 2iw3_A 705 IGPNGAGKSTLINVLTGELLPT-----SGEVYTHEN------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRET 773 (986)
T ss_dssp CSCCCHHHHHHHHHHTTSSCCS-----EEEEEECTT------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTT
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----ceEEEEcCc------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhh
Confidence 6999999999999999999987 899999863 258999997531 22468888876532100
Q ss_pred -------CC----------------------------------------------------CCC--------C-------
Q 007344 72 -------LP----------------------------------------------------EIL--------S------- 77 (607)
Q Consensus 72 -------~~----------------------------------------------------~~~--------~------- 77 (607)
.. ... .
T Consensus 774 ~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~ 853 (986)
T 2iw3_A 774 MDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVES 853 (986)
T ss_dssp TTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHH
T ss_pred hhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhh
Confidence 00 000 0
Q ss_pred -------------------HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 007344 78 -------------------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT 138 (607)
Q Consensus 78 -------------------~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts 138 (607)
....+++++++++.+||.+.. ..++++++|||||||||+||++|+.+|++|+|||||+
T Consensus 854 ~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~---~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~ 930 (986)
T 2iw3_A 854 HSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEI---VSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTN 930 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHH---HHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGG
T ss_pred HhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchh---hcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 000135688899999995311 0234577899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344 139 GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (607)
Q Consensus 139 GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~ 193 (607)
|||+.+...+++.|+++ |.|||++||++ ..+..+||++++|++|+++..|+
T Consensus 931 gLD~~s~~~L~~~L~~~---g~tVIiISHD~-e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 931 YLDRDSLGALSKALKEF---EGGVIIITHSA-EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TCCHHHHHHHHHHHHSC---SSEEEEECSCH-HHHTTTCCEEECCBTTBCCC---
T ss_pred CCCHHHHHHHHHHHHHh---CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999888765 67999999995 46778999999999999998774
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.3e-28 Score=270.85 Aligned_cols=170 Identities=25% Similarity=0.296 Sum_probs=127.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEE-----------ECCeeCCCc-------cceEEEEccCCCC------CC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLE-----------VNGKPSSNK-------AYKFAYVRQEDLF------FS 56 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~-----------~~G~~~~~~-------~~~i~yv~Q~~~l------~~ 56 (607)
+||||||||||||+|+|+++|+ +|+|. +.|...... .....+.+|.... -+
T Consensus 109 vGpNGaGKSTLLkiL~Gll~P~-----~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGKQKPN-----LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGP 183 (608)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCC-----TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSS
T ss_pred ECCCCChHHHHHHHHhcCCCCC-----CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcch
Confidence 6999999999999999999987 57652 233221110 0112333443211 11
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 007344 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP 136 (607)
Q Consensus 57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEP 136 (607)
..++.+.+.... . +..++++++++.+||.+..| +.+..|||||||||+||++|+.+|++|+||||
T Consensus 184 ~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~-----~~~~~LSgGe~Qrv~iAraL~~~p~llllDEP 248 (608)
T 3j16_B 184 VQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLK-----RDIEKLSGGELQRFAIGMSCVQEADVYMFDEP 248 (608)
T ss_dssp SSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGG-----SCTTTCCHHHHHHHHHHHHHHSCCSEEEEECT
T ss_pred hhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhC-----CChHHCCHHHHHHHHHHHHHHhCCCEEEEECc
Confidence 235666554321 0 11346889999999976554 45678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeee
Q 007344 137 TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYA 191 (607)
Q Consensus 137 tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~ 191 (607)
|+|||+.++..+.+.|++++++|+|||+++|+. ..+..++|++++|++|..+|.
T Consensus 249 ts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl-~~~~~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 249 SSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL-SVLDYLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp TTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH-HHHHHHCSEEEEEESCTTTEE
T ss_pred ccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCccccc
Confidence 999999999999999999998899999999996 578889999999988766553
No 60
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=2.1e-25 Score=260.17 Aligned_cols=124 Identities=30% Similarity=0.404 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC---CeEEEe
Q 007344 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYAD 134 (607)
Q Consensus 58 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p---~illLD 134 (607)
+||.|++.|.... ....++.++|+.+||... ..++.+..|||||||||+||++|+.+| +|||||
T Consensus 767 ~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~----~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILD 833 (916)
T 3pih_A 767 MTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYV----KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILD 833 (916)
T ss_dssp SBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGS----BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEE
T ss_pred CCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchh----hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEE
Confidence 6888888875321 123457789999999532 123467899999999999999999875 799999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (607)
Q Consensus 135 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (607)
|||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|+|++| ++|++++.|++++
T Consensus 834 EPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 834 EPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 999999999999999999999988999999999974 44 569999999 8999999999876
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=7.1e-26 Score=262.51 Aligned_cols=125 Identities=28% Similarity=0.415 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC---CeEEE
Q 007344 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYA 133 (607)
Q Consensus 57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p---~illL 133 (607)
.+||.|++.|... . .. .+++.++++.+||... ..++.+..|||||||||+||++|+.+| ++|||
T Consensus 806 ~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~----~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLIL 872 (972)
T 2r6f_A 806 DMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYM----KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYIL 872 (972)
T ss_dssp TSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSS----BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEE
T ss_pred hcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcc----cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence 3678888876432 1 11 2345789999999641 223467789999999999999999865 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344 134 DEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (607)
Q Consensus 134 DEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (607)
||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|++++
T Consensus 873 DEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~e 939 (972)
T 2r6f_A 873 DEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEE 939 (972)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHH
Confidence 9999999999999999999999988999999999964 44 679999999 7899999998765
No 62
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.92 E-value=6.4e-25 Score=237.02 Aligned_cols=80 Identities=26% Similarity=0.326 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee----
Q 007344 110 ISGGEKKRLSLACELIASP--SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL---- 183 (607)
Q Consensus 110 LSGGerqRvsIa~aL~~~p--~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL---- 183 (607)
|||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++ ++...||++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAHHHYKVEKQV 372 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcCeEEEEEEec
Confidence 6999999999999999999 9999999999999999999999999998 689999999997 355789999999
Q ss_pred cCCeeeeeC
Q 007344 184 TEGKLVYAG 192 (607)
Q Consensus 184 ~~G~iv~~G 192 (607)
++|+++...
T Consensus 373 ~~G~~~~~~ 381 (415)
T 4aby_A 373 EDGRTVSHV 381 (415)
T ss_dssp ETTEEEEEE
T ss_pred cCCceEEEE
Confidence 899987543
No 63
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.1e-27 Score=259.66 Aligned_cols=169 Identities=14% Similarity=0.049 Sum_probs=131.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccce-E-EEECCeeCCCccceEEEEccCCC---CCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-L-LEVNGKPSSNKAYKFAYVRQEDL---FFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G-~-I~~~G~~~~~~~~~i~yv~Q~~~---l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|+.+++ +| + |.+||. .++.++|++|+.. +.+.+||+||+ |.......
T Consensus 144 vGpnGsGKSTLlr~L~Gl~~p~-----~G~~pI~vdg~----~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~-- 211 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCSYALKF-----NAYQPLYINLD----PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSG-- 211 (460)
T ss_dssp EESTTSSHHHHHHHHHHTTHHH-----HCCCCEEEECC----TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSS--
T ss_pred ECCCCCCHHHHHHHHhCccccc-----CCceeEEEcCC----ccCCeeeeccchhhcccccccchhhhh-cccccccC--
Confidence 5999999999999999998876 89 8 999983 2456899999984 45568999998 64332111
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHH--HhhCCCe----EEEeC-CCCCCCHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACE--LIASPSV----IYADE-PTTGLDAFQAEKV 148 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~a--L~~~p~i----llLDE-PtsGLD~~~~~~i 148 (607)
.. .++++.++++.+|+.+..+ +++|||||||||+||++ |+.+|++ ||||| ||+|||+. ...+
T Consensus 212 ~~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l 280 (460)
T 2npi_A 212 AT---LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAEL 280 (460)
T ss_dssp CC---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHH
T ss_pred cc---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHH
Confidence 00 1233556778888865443 56899999999999999 9999999 99999 99999999 4444
Q ss_pred HHHHHHHHhcCCeEEEEecCCh--h---HHHhhhcc-----eeeec-CCeeeeeCCCCC
Q 007344 149 MEALRQLAQDGHTVICSIHQPR--G---SVYFKFDD-----IVLLT-EGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~~g~tvi~~~H~p~--~---~i~~~~D~-----v~lL~-~G~iv~~G~~~~ 196 (607)
.+++++ .|.|+|+++|+.. . .+..++|+ |++|+ +|+++ .|++++
T Consensus 281 ~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~ 335 (460)
T 2npi_A 281 HHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVY 335 (460)
T ss_dssp HHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHH
T ss_pred HHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHH
Confidence 444443 3789999999975 1 55678999 99999 99999 887654
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=6e-25 Score=254.31 Aligned_cols=108 Identities=32% Similarity=0.384 Sum_probs=95.5
Q ss_pred HHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344 83 EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS---PSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (607)
Q Consensus 83 ~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~---p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (607)
+++.++++.+||... ..++.+..|||||||||.||++|+.+ |+||||||||+|||+.+...+++.|++++++|
T Consensus 708 ~~~~~~L~~~gL~~~----~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G 783 (842)
T 2vf7_A 708 FRALDTLREVGLGYL----RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783 (842)
T ss_dssp HHHHHHHHHTTCTTS----BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCcc----cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 467899999999642 12346778999999999999999996 79999999999999999999999999999889
Q ss_pred CeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344 160 HTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (607)
Q Consensus 160 ~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (607)
.|||+++|++. .+ ..||+|++| ++|++++.|++++
T Consensus 784 ~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~e 824 (842)
T 2vf7_A 784 NTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAE 824 (842)
T ss_dssp CEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred CEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHH
Confidence 99999999964 55 789999999 7999999998655
No 65
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=3.4e-25 Score=257.72 Aligned_cols=124 Identities=28% Similarity=0.353 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC---CeEEEe
Q 007344 58 LTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP---SVIYAD 134 (607)
Q Consensus 58 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p---~illLD 134 (607)
+||.|++.|.... .. .+++.++++.+||... ..++.+..|||||||||+||++|+.+| ++||||
T Consensus 825 ltv~e~l~~~~~~-------~~--~~~~~~~L~~lgL~~~----~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILD 891 (993)
T 2ygr_A 825 MSIEEAAEFFEPI-------AG--VHRYLRTLVDVGLGYV----RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILD 891 (993)
T ss_dssp SBHHHHHHHSTTC-------HH--HHHHHHHHHHTTGGGS----BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEE
T ss_pred ccHHHHHHHhhcc-------hH--HHHHHHHHHHcCCCcc----cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEE
Confidence 5777877764321 11 2345789999999541 223467789999999999999999865 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344 135 EPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (607)
Q Consensus 135 EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (607)
|||+|||+.+...+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|++++
T Consensus 892 EPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~e 957 (993)
T 2ygr_A 892 EPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPED 957 (993)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHH
Confidence 999999999999999999999988999999999964 44 679999999 7899999998765
No 66
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.88 E-value=1.3e-22 Score=216.01 Aligned_cols=84 Identities=25% Similarity=0.407 Sum_probs=77.6
Q ss_pred CcCCCCCHHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhc
Q 007344 105 AKVRGISGGEKKRLSLACELI------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFD 178 (607)
Q Consensus 105 ~~~~~LSGGerqRvsIa~aL~------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D 178 (607)
+.+.+|||||||||+||++|+ .+|++|||||||+|||+.+...+++.|++++++|+|||+++|++. ....+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 467889999999999999999 699999999999999999999999999999988999999999974 367799
Q ss_pred ceeeecCCeeee
Q 007344 179 DIVLLTEGKLVY 190 (607)
Q Consensus 179 ~v~lL~~G~iv~ 190 (607)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
No 67
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.86 E-value=1.1e-22 Score=195.00 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=99.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC--CccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS--NKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~--~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 78 (607)
+||||||||||+|+|+|.+. ..+.|... .+.. ...+++||++|+. ++.+++ + +..
T Consensus 6 ~G~nGsGKTTLl~~l~g~l~----i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~-------- 62 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVERLG----KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSK-------- 62 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHHG----GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EET--------
T ss_pred ECCCCCCHHHHHHHHHHHhC----CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-Hhh--------
Confidence 59999999999999999874 22344321 1221 2235699999975 222332 0 000
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCHHHHHHHHHH
Q 007344 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACE-----LIASPSVIYADE--PTTGLDAFQAEKVMEA 151 (607)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~a-----L~~~p~illLDE--PtsGLD~~~~~~i~~~ 151 (607)
+... ....++++..||||||||++||++ ++.+|++++||| ||++||+.....+.+.
T Consensus 63 --------------~~~~---~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~ 125 (178)
T 1ye8_A 63 --------------FFTS---KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQI 125 (178)
T ss_dssp --------------TCCC---SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHH
T ss_pred --------------cCCc---cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHH
Confidence 1000 011234567899999999999996 999999999999 9999999999998888
Q ss_pred HHHHHhcCCeEEEEec--CChhHHHhhhcceeeecCCeeee
Q 007344 152 LRQLAQDGHTVICSIH--QPRGSVYFKFDDIVLLTEGKLVY 190 (607)
Q Consensus 152 L~~la~~g~tvi~~~H--~p~~~i~~~~D~v~lL~~G~iv~ 190 (607)
+++ .+.|+|+++| +....+..++|+ .+|+++.
T Consensus 126 l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 126 MHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred Hhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 865 4677999997 345567777777 5567665
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=3.1e-22 Score=209.52 Aligned_cols=89 Identities=25% Similarity=0.290 Sum_probs=73.9
Q ss_pred CCcCCCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcc
Q 007344 104 DAKVRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179 (607)
Q Consensus 104 ~~~~~~LSGGerqRvsIa~aL~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~ 179 (607)
+..+..||||||||++||++|+ .+|++++|||||++||+.....+.+.|++++ +|.|||+++|++ ++...+|+
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~--~~~~~~d~ 290 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNK--IVMEAADL 290 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCT--TGGGGCSE
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCH--HHHhhCce
Confidence 3456789999999999999997 5789999999999999999999999999985 488999999995 35678998
Q ss_pred e--eeecCCee-eeeCCCC
Q 007344 180 I--VLLTEGKL-VYAGPAR 195 (607)
Q Consensus 180 v--~lL~~G~i-v~~G~~~ 195 (607)
+ ++|.+|+. +.....+
T Consensus 291 ~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEEESSSCEEEEECCC-
T ss_pred EEEEEEeCCEEEEEEEEcc
Confidence 6 77777754 4334433
No 69
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.86 E-value=2.2e-24 Score=212.11 Aligned_cols=125 Identities=20% Similarity=0.235 Sum_probs=85.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEEC--CeeCCCccceEEEEccCCCCCCCCCHHHHH-HHHH----HccCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVN--GKPSSNKAYKFAYVRQEDLFFSQLTVRETL-SLAA----ELQLP 73 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~--G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l-~~~~----~~~~~ 73 (607)
+||||||||||||+|+|+ +|+ +|+|... ..+....++++|||+|++ +||+ .+.. .+..
T Consensus 28 iG~nGsGKSTLl~~l~Gl-~p~-----~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~enl~~~~~~~~~~~~~- 92 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ-ALQ-----SKQVSRIILTRPAVEAGEKLGFLPGTL--------NEKIDPYLRPLHDALRD- 92 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH-HHH-----TTSCSEEEEEECSCCTTCCCCSSCC--------------CTTTHHHHHHHTT-
T ss_pred ECCCCCCHHHHHHHHhcC-CCc-----CCeeeeEEecCCchhhhcceEEecCCH--------HHHHHHHHHHHHHHHHH-
Confidence 599999999999999999 776 4555211 011112245699999975 4444 2211 1110
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 007344 74 EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALR 153 (607)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~ 153 (607)
... .++++++++. |+ ||||||+||++|+.+|++|||||||+| ++..+.+.|+
T Consensus 93 -~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~ 144 (208)
T 3b85_A 93 -MVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT 144 (208)
T ss_dssp -TSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred -hcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence 001 1235555554 32 999999999999999999999999999 8899999999
Q ss_pred HHHhcCCeEEEEecCCh
Q 007344 154 QLAQDGHTVICSIHQPR 170 (607)
Q Consensus 154 ~la~~g~tvi~~~H~p~ 170 (607)
++ ++|+||| ++|++.
T Consensus 145 ~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 145 RL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp TB-CTTCEEE-EEEC--
T ss_pred Hh-cCCCEEE-EECCHH
Confidence 98 6789999 999964
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=1.4e-22 Score=218.22 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=119.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||+|+|+|+.+++ +|+|.++|.+.+. .+|++|++ .++.+|+.|++.+.. +
T Consensus 75 vG~nGaGKSTLln~L~Gl~~p~-----~GsI~~~g~~~t~----~~~v~q~~-~~~~ltv~D~~g~~~----~------- 133 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGIGNEE-----EGAAKTGVVEVTM----ERHPYKHP-NIPNVVFWDLPGIGS----T------- 133 (413)
T ss_dssp EECTTSSHHHHHHHHHTCCTTS-----TTSCCCCC----C----CCEEEECS-SCTTEEEEECCCGGG----S-------
T ss_pred ECCCCCcHHHHHHHHhCCCCcc-----CceEEECCeecce----eEEecccc-ccCCeeehHhhcccc----h-------
Confidence 5999999999999999999887 7999999876532 27899985 577889998875431 0
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHH--HHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHH
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGG--EKKRLSLACELIA----------SPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGG--erqRvsIa~aL~~----------~p~illLDEPtsGLD~~~~~~i 148 (607)
+.+++++++.+++.+.. . .+. +||| ||||+.||++|+. +|++++|||||+|||+.++.++
T Consensus 134 -~~~~~~~L~~~~L~~~~-~-----~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l 205 (413)
T 1tq4_A 134 -NFPPDTYLEKMKFYEYD-F-----FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKV 205 (413)
T ss_dssp -SCCHHHHHHHTTGGGCS-E-----EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHH
T ss_pred -HHHHHHHHHHcCCCccC-C-----eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHH
Confidence 12467889999986432 1 222 9999 9999999999999 9999999999999999999999
Q ss_pred HHHHHHHH-----hcC----CeEEEEecCChh-HHHhhhccee
Q 007344 149 MEALRQLA-----QDG----HTVICSIHQPRG-SVYFKFDDIV 181 (607)
Q Consensus 149 ~~~L~~la-----~~g----~tvi~~~H~p~~-~i~~~~D~v~ 181 (607)
++.++++. +.| .+|++++|+... .+.+++|++.
T Consensus 206 ~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 206 LQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999985 333 578899998653 3777778774
No 71
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.81 E-value=3.4e-22 Score=204.21 Aligned_cols=141 Identities=17% Similarity=0.154 Sum_probs=92.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 78 (607)
+||||||||||+|+|+|...++ +|+|.++|+++... .+.++|++|++.+++.+||.||+.|+..... ....
T Consensus 8 vG~nGaGKSTLln~L~g~~~~~-----~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~~ 80 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKSQVSR-----KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENCW 80 (270)
T ss_dssp EESSSSSHHHHHHHHHHHHC-----------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC-----CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHHH
Confidence 6999999999999999999887 79999999876443 3569999999999999999999988754331 1111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q 007344 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD 158 (607)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~ 158 (607)
+ .+.+.++ .+.. +.....||||||||++|||+++. ++++|||++|||+.. .+.++++.+.
T Consensus 81 ~----~i~~~~~----~~~~-----~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~ 140 (270)
T 3sop_A 81 E----PIEKYIN----EQYE-----KFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV 140 (270)
T ss_dssp H----HHHHHHH----HHHH-----HHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT
T ss_pred H----HHHHHHH----HHHH-----hhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc
Confidence 1 2222222 1111 22345799999999999999775 999999999999987 5566667665
Q ss_pred CCeEEEEecCC
Q 007344 159 GHTVICSIHQP 169 (607)
Q Consensus 159 g~tvi~~~H~p 169 (607)
.+||+++|..
T Consensus 141 -~~vI~Vi~K~ 150 (270)
T 3sop_A 141 -VNIIPVIAKA 150 (270)
T ss_dssp -SEEEEEETTG
T ss_pred -CcEEEEEecc
Confidence 8999999873
No 72
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.80 E-value=4.7e-21 Score=182.19 Aligned_cols=63 Identities=11% Similarity=0.240 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF----------------QAEKVMEALRQLAQDGHTVICSIHQPR 170 (607)
Q Consensus 108 ~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~----------------~~~~i~~~L~~la~~g~tvi~~~H~p~ 170 (607)
...|||||||++||++++.+|++++|||||+|||+. ....+.+.+++++++|.|+|+++|++.
T Consensus 82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 346999999999999999999999999999999999 668899999999878999999999964
No 73
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.80 E-value=3.4e-20 Score=216.30 Aligned_cols=161 Identities=26% Similarity=0.394 Sum_probs=124.8
Q ss_pred HHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC-C-----HHHHHH
Q 007344 10 TLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL-S-----VEERDE 83 (607)
Q Consensus 10 TLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~-~-----~~~~~~ 83 (607)
|+..|..+++.+. .|+|.++|+++.. +..+||.|++.|.....++... . .++. +
T Consensus 383 ~C~~C~g~rl~~~-----~~~V~i~G~~i~~--------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~-~ 442 (916)
T 3pih_A 383 TCSVCGGRRLNRE-----ALSVKINGLNIHE--------------FTELSISEELEFLKNLNLTEREREIVGELLKEI-E 442 (916)
T ss_dssp ECTTTCSCCBCTT-----GGGEEETTEEHHH--------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH-H
T ss_pred cchhcccccCChH-----hcCcEECCccHHH--------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHH-H
Confidence 3445666677765 7899999987632 3446888998886554332111 0 0112 2
Q ss_pred HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCe
Q 007344 84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAEKVMEALRQLAQDGHT 161 (607)
Q Consensus 84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~--illLDEPtsGLD~~~~~~i~~~L~~la~~g~t 161 (607)
...+.|..+||.... .++.+.+|||||||||.||++|+++|+ +|+|||||+|||+.....+++.|++++++|.|
T Consensus 443 ~~~~~L~~vgL~~l~----l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~T 518 (916)
T 3pih_A 443 KRLEFLVDVGLEYLT----LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNT 518 (916)
T ss_dssp HHHHHHHTTTCTTCB----TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCE
T ss_pred HHHHHHHHcCCcccc----ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCE
Confidence 345678889995431 245677899999999999999999887 99999999999999999999999999988999
Q ss_pred EEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344 162 VICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (607)
Q Consensus 162 vi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (607)
||+++|++. .+ ..+|+|++| ++|++++.|++++
T Consensus 519 vivVtHd~~-~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e 557 (916)
T 3pih_A 519 VIVVEHDEE-VI-RNADHIIDIGPGGGTNGGRVVFQGTVDE 557 (916)
T ss_dssp EEEECCCHH-HH-HTCSEEEEEESSSGGGCSEEEEEECHHH
T ss_pred EEEEeCCHH-HH-HhCCEEEEEcCCcccCCCEEEEeechhh
Confidence 999999963 44 459999999 8999999998765
No 74
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.77 E-value=9.3e-23 Score=199.69 Aligned_cols=162 Identities=15% Similarity=0.089 Sum_probs=112.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-ccceEEEEccCCCCCCCCCHHHHHHHHHHccC---CCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-KAYKFAYVRQEDLFFSQLTVRETLSLAAELQL---PEIL 76 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~---~~~~ 76 (607)
+||||||||||+|+|+|+++.. .+.+.+.+.+... ..+.++|++|+..+++.+|+.|++........ ....
T Consensus 26 ~GpnGsGKSTLl~~l~gl~~~i-----~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~ 100 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRERIPNL-----HFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGT 100 (207)
T ss_dssp ECSTTSSHHHHHHHHHHHSTTC-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEE
T ss_pred ECCCCCCHHHHHHHHHhhCCce-----EEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchhhcCC
Confidence 6999999999999999998521 2222232322211 23458999999888888888777632111000 0012
Q ss_pred CHHHHHHHHHHH------HHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC----CHHHHH
Q 007344 77 SVEERDEYVNSL------LFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGL----DAFQAE 146 (607)
Q Consensus 77 ~~~~~~~~v~~~------l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGL----D~~~~~ 146 (607)
++++.++++++. ++.+|+.+.+ +..++.|| +|+.+|++++|||||+|+ |+..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----~~~~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~ 164 (207)
T 1znw_A 101 LAQPVRAAAATGVPVLIEVDLAGARAIK-----KTMPEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQR 164 (207)
T ss_dssp EHHHHHHHHHHTCCEEEECCHHHHHHHH-----HHCTTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHH
T ss_pred cHHHHHHHHHcCCeEEEEeCHHHHHHHH-----HhcCCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHH
Confidence 344455556554 4455553332 23445666 889999999999999998 788999
Q ss_pred HHHHHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeec
Q 007344 147 KVMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (607)
Q Consensus 147 ~i~~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 184 (607)
++.+.+++++ +.|.|+|+++|++ .++...||++++|.
T Consensus 165 ~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 165 RLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 9999999997 4689999999996 57889999999984
No 75
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.77 E-value=1.8e-18 Score=200.77 Aligned_cols=135 Identities=24% Similarity=0.410 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHHccCCCC---CC---HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC
Q 007344 55 FSQLTVRETLSLAAELQLPEI---LS---VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP 128 (607)
Q Consensus 55 ~~~lTV~E~l~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p 128 (607)
+..+||.|++.|...+.++.. .. .++..+++ +.|+.+||... ..++.+..|||||||||.||++|..+|
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l----~ldR~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYL----TLSRSAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTS----BSSSBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCcc----ccCCccccCCHHHHHHHHHHHHHhhCC
Confidence 345899999999877654320 00 02344555 45899999542 124567789999999999999999985
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344 129 --SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (607)
Q Consensus 129 --~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (607)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++. .+ ..+|+|++| ++|++++.|++++
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e 597 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEE 597 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-HH-HSCSEEEEECSSSGGGCCSEEEEECTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEeCCCccCCCCEEEEecCHHH
Confidence 999999999999999999999999999989999999999963 44 579999999 7999999999887
No 76
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.76 E-value=1.5e-18 Score=182.77 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=70.9
Q ss_pred CCcCCCCCHHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhh
Q 007344 104 DAKVRGISGGEKK------RLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177 (607)
Q Consensus 104 ~~~~~~LSGGerq------RvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~ 177 (607)
+..++.||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||+++|++ ++...|
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~ 320 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 320 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhC
Confidence 3457889999999 66777888889999999999999999999999999999988899999999995 467889
Q ss_pred cceeeec
Q 007344 178 DDIVLLT 184 (607)
Q Consensus 178 D~v~lL~ 184 (607)
|+++.|+
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999995
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.76 E-value=3.9e-20 Score=191.81 Aligned_cols=156 Identities=16% Similarity=0.103 Sum_probs=116.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----------cceEEEEccCCC-CCCCCCHHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDL-FFSQLTVRETLSLAA 68 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~-l~~~lTV~E~l~~~~ 68 (607)
+||||||||||+++|+|++++. +|+|.++|.+.... +..++|++|++. +++.+||+|++.++.
T Consensus 106 vG~nGsGKTTll~~Lag~l~~~-----~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~ 180 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAHRLKNE-----GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 180 (302)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHT-----TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHHH
Confidence 5999999999999999999876 79999999876432 124999999988 888899999998864
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHH
Q 007344 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAE 146 (607)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~--illLDEPtsGLD~~~~~ 146 (607)
... .. ..+++.+|+.+..+ ..+++|| |||++||++|+.+|+ +|+|| ||+|||+...
T Consensus 181 ~~~----~d--------~~lldt~gl~~~~~-----~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~- 238 (302)
T 3b9q_A 181 EEG----YD--------VVLCDTSGRLHTNY-----SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ- 238 (302)
T ss_dssp HTT----CS--------EEEECCCCCSSCCH-----HHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH-
T ss_pred HcC----Cc--------chHHhcCCCCcchh-----HHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH-
Confidence 311 00 13456677755443 3456799 999999999999999 99999 9999998754
Q ss_pred HHHHHHHHHH-hcCCeEEEEecCCh--------hHHHhhhcceeeecCCee
Q 007344 147 KVMEALRQLA-QDGHTVICSIHQPR--------GSVYFKFDDIVLLTEGKL 188 (607)
Q Consensus 147 ~i~~~L~~la-~~g~tvi~~~H~p~--------~~i~~~~D~v~lL~~G~i 188 (607)
++++. +.|.|+|++||... +.+....+.|..+..|+.
T Consensus 239 -----~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 239 -----AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp -----HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -----HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 34555 45899999999432 123334456777777754
No 78
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.76 E-value=4.4e-19 Score=205.43 Aligned_cols=172 Identities=22% Similarity=0.272 Sum_probs=126.5
Q ss_pred CCCcHHHHHHHHHcCcCCC-CCC---ccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCC------
Q 007344 4 SGSGKTTLLNVLAGQLMAS-PRL---HLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP------ 73 (607)
Q Consensus 4 sGsGKSTLL~~LaG~~~~~-~~~---~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~------ 73 (607)
|..||+++.+.+....-|. .+. ...|+|.++|+++.+.. .+++.|.+.|.......
T Consensus 271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~--------------~~~v~e~~~~~~~~~~~~~~~~~ 336 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELS--------------RLPLARVSELLRPYAEEREPGHA 336 (842)
T ss_dssp CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHH--------------HSBHHHHHHHHHHHHTTCSSCST
T ss_pred CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHh--------------hcCHHHHHHHHHhhhhhhhhccc
Confidence 4468999999888743222 111 13677888887664321 13455554444433100
Q ss_pred ----CCCC--------HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC--CeEEEeCCCCC
Q 007344 74 ----EILS--------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--SVIYADEPTTG 139 (607)
Q Consensus 74 ----~~~~--------~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p--~illLDEPtsG 139 (607)
-... .++..++++ .++.+||.+. ..++.+..|||||||||.||++|..+| ++|+|||||+|
T Consensus 337 ~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l----~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~ 411 (842)
T 2vf7_A 337 ERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYL----GLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAG 411 (842)
T ss_dssp TSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTS----BTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTT
T ss_pred chhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcC----CccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCcccc
Confidence 0000 234556666 6889999643 124567789999999999999999999 59999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344 140 LDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (607)
Q Consensus 140 LD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (607)
||+.....++++|++|++.|.|||+++|++. +...+|+|++| ++|++++.|++++
T Consensus 412 Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~ 472 (842)
T 2vf7_A 412 LHPADTEALLSALENLKRGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEG 472 (842)
T ss_dssp CCGGGHHHHHHHHHHHHTTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGG
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHH
Confidence 9999999999999999999999999999963 55679999999 7999999999876
No 79
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=2.5e-18 Score=159.70 Aligned_cols=82 Identities=26% Similarity=0.331 Sum_probs=73.9
Q ss_pred CCcCCCCCHHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhh
Q 007344 104 DAKVRGISGGEKKRLSLA------CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177 (607)
Q Consensus 104 ~~~~~~LSGGerqRvsIa------~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~ 177 (607)
++.++.||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.++|+|||+++|++ ++...+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 456789999999999886 899999999999999999999999999999999987799999999996 456889
Q ss_pred cceeee--cCCe
Q 007344 178 DDIVLL--TEGK 187 (607)
Q Consensus 178 D~v~lL--~~G~ 187 (607)
|++++| .+|.
T Consensus 130 d~ii~l~~~~g~ 141 (148)
T 1f2t_B 130 DHVIRISLENGS 141 (148)
T ss_dssp SEEEEEEEETTE
T ss_pred CEEEEEEcCCCe
Confidence 999999 4553
No 80
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.73 E-value=3.7e-18 Score=198.81 Aligned_cols=135 Identities=24% Similarity=0.368 Sum_probs=107.9
Q ss_pred CCCCCHHHHHHHHHHccCCCCCC------HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhC-
Q 007344 55 FSQLTVRETLSLAAELQLPEILS------VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIAS- 127 (607)
Q Consensus 55 ~~~lTV~E~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~- 127 (607)
+..+||.|.+.|...+.++.... .++..+++ +.++.+||... ..++.+..|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l----~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYL----SLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGS----CTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCcc----ccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 45689999999965543321000 03344555 35788999532 12456778999999999999999999
Q ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeee------cCCeeeeeCCCCC
Q 007344 128 -PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLL------TEGKLVYAGPARD 196 (607)
Q Consensus 128 -p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL------~~G~iv~~G~~~~ 196 (607)
|++|+|||||+|||+.....+++.|++|++.|.|||+++|++. . ...+|+|++| ++|++++.|++++
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-T-IEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-H-HHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 5899999999999999999999999999999999999999963 4 4579999999 7999999998765
No 81
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.72 E-value=3.4e-19 Score=188.53 Aligned_cols=156 Identities=16% Similarity=0.106 Sum_probs=117.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----------cceEEEEccCCC-CCCCCCHHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDL-FFSQLTVRETLSLAA 68 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~-l~~~lTV~E~l~~~~ 68 (607)
+||||||||||++.|+|++++. +|+|.++|.+.... +..++|++|++. +++.+||+|++.++.
T Consensus 163 vG~nGsGKTTll~~Lag~l~~~-----~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAHRLKNE-----GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGK 237 (359)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHT-----TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHhhcccc-----CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHHH
Confidence 5999999999999999999876 79999999876431 124999999988 888899999998864
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHH
Q 007344 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS--VIYADEPTTGLDAFQAE 146 (607)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~--illLDEPtsGLD~~~~~ 146 (607)
... .. ..+++.+|+.+..+ ..+++|| |||++||++|+.+|+ +|+|| ||+|||+.+..
T Consensus 238 ~~~----~d--------~~lldt~Gl~~~~~-----~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~ 296 (359)
T 2og2_A 238 EEG----YD--------VVLCDTSGRLHTNY-----SLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 296 (359)
T ss_dssp HTT----CS--------EEEEECCCCSSCCH-----HHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred hCC----CH--------HHHHHhcCCChhhh-----hHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence 311 10 13456677755443 3456799 999999999999999 99999 99999987653
Q ss_pred HHHHHHHHHH-hcCCeEEEEecCCh--------hHHHhhhcceeeecCCee
Q 007344 147 KVMEALRQLA-QDGHTVICSIHQPR--------GSVYFKFDDIVLLTEGKL 188 (607)
Q Consensus 147 ~i~~~L~~la-~~g~tvi~~~H~p~--------~~i~~~~D~v~lL~~G~i 188 (607)
+++. +.|.|+|++||... +......+.|..+..|+.
T Consensus 297 ------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 ------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp ------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred ------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 4455 35899999999421 123334456766666643
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.72 E-value=2.8e-18 Score=180.10 Aligned_cols=113 Identities=15% Similarity=0.173 Sum_probs=90.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||+|+|+|.++++ +|.|.++|.+... ..+.+++++
T Consensus 177 ~G~~GsGKTTll~~l~g~~~~~-----~g~i~i~~~~e~~~~~~~~~i~~~~---------------------------- 223 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEFIPKE-----ERIISIEDTEEIVFKHHKNYTQLFF---------------------------- 223 (330)
T ss_dssp EESTTSCHHHHHHHGGGGSCTT-----SCEEEEESSCCCCCSSCSSEEEEEC----------------------------
T ss_pred ECCCCCCHHHHHHHHhCCCcCC-----CcEEEECCeeccccccchhEEEEEe----------------------------
Confidence 5999999999999999999886 7999999864211 112233332
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
+ |||+||++||++|..+|+++++||||+ .++.+.|+.+..
T Consensus 224 -------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~ 263 (330)
T 2pt7_A 224 -------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCS 263 (330)
T ss_dssp -------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHT
T ss_pred -------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhc
Confidence 1 899999999999999999999999998 245677777765
Q ss_pred cCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344 158 DGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (607)
Q Consensus 158 ~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i 188 (607)
.+.|+++++|+++ ....+||+++|.+|+.
T Consensus 264 g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 264 GHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred CCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 4458999999975 6677999999988854
No 83
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.70 E-value=1.1e-20 Score=195.49 Aligned_cols=137 Identities=17% Similarity=0.246 Sum_probs=100.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHH-HHHHHHHccCCCCCCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRE-TLSLAAELQLPEILSVE 79 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E-~l~~~~~~~~~~~~~~~ 79 (607)
+||||||||||+++|+|++ +|+| ++|++|++.++.. |++| |+.+... .+.
T Consensus 132 vGpsGsGKSTLl~lL~gl~--------~G~I-------------~~~v~q~~~lf~~-ti~~~ni~~~~~------~~~- 182 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIHFL--------GGSV-------------LSFANHKSHFWLA-SLADTRAALVDD------ATH- 182 (305)
T ss_dssp ECSSSSSHHHHHHHHHHHH--------TCEE-------------ECGGGTTSGGGGG-GGTTCSCEEEEE------ECH-
T ss_pred ECCCCCcHHHHHHHHhhhc--------CceE-------------EEEecCccccccc-cHHHHhhccCcc------ccH-
Confidence 5999999999999999986 4776 4578898888775 7876 7765311 111
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (607)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (607)
.+.+.++.+ |.+..| ...|||||||| ||+|+.+|+||| ||+||+.+...+..
T Consensus 183 ----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 234455553 333222 45899999999 999999999999 99999999988862
Q ss_pred CeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCCchhhHhh
Q 007344 160 HTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARDEPLAYFS 203 (607)
Q Consensus 160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~~~~~~f~ 203 (607)
.+|++. ....+|+| +|++|++++.|+.++ ....|.
T Consensus 235 -----ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~e-l~~~y~ 269 (305)
T 2v9p_A 235 -----LHSRVQ--TFRFEQPC-TDESGEQPFNITDAD-WKSFFV 269 (305)
T ss_dssp -----GTTTEE--EEECCCCC-CCC---CCCCCCHHH-HHHHHH
T ss_pred -----HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHH-HHHHHH
Confidence 178764 35789999 999999999998766 444443
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.69 E-value=1.6e-19 Score=188.08 Aligned_cols=151 Identities=9% Similarity=0.003 Sum_probs=107.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||+++|+|++++. .|. .+++||+|++.+++. |++||+.+.... ..+...
T Consensus 96 ~G~sGsGKSTL~~~L~gll~~~-----~G~------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g~~~~~ 153 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQALLARW-----DHH------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----GFPESY 153 (312)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTS-----TTC------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----TSGGGB
T ss_pred ECCCCchHHHHHHHHHhhcccc-----CCC------------CeEEEEecCccCCcc-cHHHHHHHHHhc----CCChHH
Confidence 5999999999999999998764 332 458999999999988 999997642211 112222
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (607)
..+.+.+.++.++ .+..+ ..+..|||||+||+++|++++.+|+|||+|||+..+|+.. ..+.+.-.
T Consensus 154 d~~~~~~~L~~l~-~~~~~-----~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D 219 (312)
T 3aez_A 154 NRRALMRFVTSVK-SGSDY-----ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFD 219 (312)
T ss_dssp CHHHHHHHHHHHH-TTCSC-----EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCS
T ss_pred HHHHHHHHHHHhC-CCccc-----CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcC
Confidence 2345677888887 43332 2456899999999999999999999999999999998621 11222222
Q ss_pred eEEEEecCChhHHHhhhcceeeecCCe
Q 007344 161 TVICSIHQPRGSVYFKFDDIVLLTEGK 187 (607)
Q Consensus 161 tvi~~~H~p~~~i~~~~D~v~lL~~G~ 187 (607)
.+|++.|+.........+|.+.+.+|+
T Consensus 220 ~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 220 FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 456666665555556677777777665
No 85
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.68 E-value=1.2e-19 Score=197.12 Aligned_cols=156 Identities=19% Similarity=0.193 Sum_probs=121.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe---eCCC----------ccceEEEEccC-CCCCCCCCHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK---PSSN----------KAYKFAYVRQE-DLFFSQLTVRETLSL 66 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~---~~~~----------~~~~i~yv~Q~-~~l~~~lTV~E~l~~ 66 (607)
+|||||||||||++|+|..+++ .|.|.++|+ +... ..+.++||+|+ +.+++.+||.+|+.+
T Consensus 163 vG~sGsGKSTLl~~Iag~~~~~-----~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARYTRAD-----VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp EECTTSSHHHHHHHHHHHSCCS-----EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcccCCC-----eEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 5999999999999999999886 899999998 3322 13469999995 566778899999988
Q ss_pred HHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q 007344 67 AAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAE 146 (607)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~ 146 (607)
.++.... ..+.+ + ...| .+..+|+|| |||+|| +.+|++ |+|||+.+..
T Consensus 238 ~ae~~~~-------~~~~v---~------~~ld------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~ 285 (438)
T 2dpy_A 238 IAEDFRD-------RGQHV---L------LIMD------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFA 285 (438)
T ss_dssp HHHHHHT-------TTCEE---E------EEEE------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHH
T ss_pred HHHHHHh-------CCCCH---H------HHHH------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHH
Confidence 7653210 00000 0 0111 245699999 999999 888988 9999999999
Q ss_pred HHHHHHHHHHh---c-CC-----eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 147 KVMEALRQLAQ---D-GH-----TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 147 ~i~~~L~~la~---~-g~-----tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.++++++.+ + |+ ||++++|+.+ ...+|++++|.+|+++..|++.+
T Consensus 286 ~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~ 341 (438)
T 2dpy_A 286 KLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAE 341 (438)
T ss_dssp HHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHH
Confidence 99999999876 3 64 9999999986 46789999999999998886544
No 86
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.67 E-value=5.4e-17 Score=180.71 Aligned_cols=144 Identities=15% Similarity=0.081 Sum_probs=108.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||+++++|..++. |+ +.+.|++|+.. .++.++. .+ . ..+.
T Consensus 287 ~G~~GsGKSTLl~~l~g~~~~~------G~------------~vi~~~~ee~~----~~l~~~~---~~--~--g~~~-- 335 (525)
T 1tf7_A 287 TGATGTGKTLLVSRFVENACAN------KE------------RAILFAYEESR----AQLLRNA---YS--W--GMDF-- 335 (525)
T ss_dssp EECTTSSHHHHHHHHHHHHHTT------TC------------CEEEEESSSCH----HHHHHHH---HT--T--SCCH--
T ss_pred EeCCCCCHHHHHHHHHHHHHhC------CC------------CEEEEEEeCCH----HHHHHHH---HH--c--CCCH--
Confidence 4999999999999999987653 32 12456667641 1222222 11 1 1221
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH-----HHHHHHHHHHHH
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAF-----QAEKVMEALRQL 155 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~-----~~~~i~~~L~~l 155 (607)
++ +...|+.+.. +..+..|||||+||+.+|+++..+|+++++| ||+|||.. .+..+.++++.+
T Consensus 336 -----~~-~~~~g~~~~~-----~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l 403 (525)
T 1tf7_A 336 -----EE-MERQNLLKIV-----CAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYA 403 (525)
T ss_dssp -----HH-HHHTTSEEEC-----CCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred -----HH-HHhCCCEEEE-----EeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHH
Confidence 12 2345654333 3456789999999999999999999999999 99999999 999999999999
Q ss_pred HhcCCeEEEEecCCh---------hHHHhhhcceeeecCCe
Q 007344 156 AQDGHTVICSIHQPR---------GSVYFKFDDIVLLTEGK 187 (607)
Q Consensus 156 a~~g~tvi~~~H~p~---------~~i~~~~D~v~lL~~G~ 187 (607)
++.|.|||+++|+.. ..+..++|+|++|++|+
T Consensus 404 ~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 404 KQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 989999999999971 45677899999999886
No 87
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.64 E-value=4.8e-17 Score=167.58 Aligned_cols=164 Identities=16% Similarity=0.137 Sum_probs=102.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccce-EEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-LLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G-~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||++.|+|...+. +| .|.+.+...... .+++.++.|... +++.+++.... + +
T Consensus 41 ~G~~G~GKTTl~~~ia~~~~~~-----~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~l~~~~-~------~ 104 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQWGTA-----MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDSLKREI-I------E 104 (296)
T ss_dssp EESTTSSHHHHHHHHHHHHHHT-----SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHHHHHHH-H------H
T ss_pred EeCCCCCHHHHHHHHHHHHHHH-----cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccccccCC-C------C
Confidence 5999999999999999998765 35 564433222211 123333333321 12233443221 1 1
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHH-HHHHHHHHHHhhCCCeEEEeCCCC---C---CCH-HHHHHHH
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE-KKRLSLACELIASPSVIYADEPTT---G---LDA-FQAEKVM 149 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIa~aL~~~p~illLDEPts---G---LD~-~~~~~i~ 149 (607)
.++.++.++++++..++. + ...+..+|.+| +||+. |+++..+|+++++||||+ + +|. ....+++
T Consensus 105 ~~~~~~~~~~~l~~~~l~------i-~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~ 176 (296)
T 1cr0_A 105 NGKFDQWFDELFGNDTFH------L-YDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLM 176 (296)
T ss_dssp HTHHHHHHHHHHSSSCEE------E-ECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHH
T ss_pred HHHHHHHHHHHhccCCEE------E-ECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHH
Confidence 223334455555433331 1 11234689998 66666 999999999999999999 5 555 6678899
Q ss_pred HHHHHHHh-cCCeEEEEecCCh-h--------------------HHHhhhcceeeecCCee
Q 007344 150 EALRQLAQ-DGHTVICSIHQPR-G--------------------SVYFKFDDIVLLTEGKL 188 (607)
Q Consensus 150 ~~L~~la~-~g~tvi~~~H~p~-~--------------------~i~~~~D~v~lL~~G~i 188 (607)
+.|+++++ .|.|||+++|+.. . .+...||+|++|++|+.
T Consensus 177 ~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 177 TKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 99999985 4999999999952 2 67788999999988864
No 88
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.61 E-value=7.9e-20 Score=180.64 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=106.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------ccceEEEEccCCCCCCCCCH-HHHHH---HHHHc
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------KAYKFAYVRQEDLFFSQLTV-RETLS---LAAEL 70 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------~~~~i~yv~Q~~~l~~~lTV-~E~l~---~~~~~ 70 (607)
+||||||||||+|+|+|+. + |+|.+ |.+... ....++|++|++.+|+.++. .+++. +....
T Consensus 29 vGpsGsGKSTLl~~L~g~~-p-------G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 99 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNEF-P-------NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNF 99 (218)
T ss_dssp ECSTTSSHHHHHHHHHHHS-T-------TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred ECCCCCCHHHHHHHHHhhC-C-------CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhccccc
Confidence 5999999999999999986 2 56777 654321 12458999998766654321 11111 11111
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHH-----HHHHhhCCCeEEEeCCCCCCCHHHH
Q 007344 71 QLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSL-----ACELIASPSVIYADEPTTGLDAFQA 145 (607)
Q Consensus 71 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsI-----a~aL~~~p~illLDEPtsGLD~~~~ 145 (607)
. ..+. ..++++++...+ ... ...+|||||||++| +++++.+|++++|||||+++|..+.
T Consensus 100 ~---g~~~----~~i~~~l~~~~~-----~il----~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~ 163 (218)
T 1z6g_A 100 Y---GTLK----SEYDKAKEQNKI-----CLF----EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQ 163 (218)
T ss_dssp E---EEEH----HHHHHHHHTTCE-----EEE----EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCH
T ss_pred C---CCcH----HHHHHHHhCCCc-----EEE----EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCH
Confidence 0 1111 235666665433 111 14699999999999 8899999999999999999999999
Q ss_pred HHHHHHHHHHHh-------cCCeEEEEecCChhHHHhhhcceeee
Q 007344 146 EKVMEALRQLAQ-------DGHTVICSIHQPRGSVYFKFDDIVLL 183 (607)
Q Consensus 146 ~~i~~~L~~la~-------~g~tvi~~~H~p~~~i~~~~D~v~lL 183 (607)
..+.+.++++.+ .+.+.|+++|++ .+.+...|+++.-
T Consensus 164 ~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 164 EQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYLLN 207 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHHHH
Confidence 999998887643 356677777774 4566666766543
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.60 E-value=2.5e-17 Score=164.23 Aligned_cols=151 Identities=15% Similarity=0.055 Sum_probs=92.9
Q ss_pred CCCCCCcHHHHHHHHH--cCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344 1 MGPSGSGKTTLLNVLA--GQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (607)
Q Consensus 1 lGpsGsGKSTLL~~La--G~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 74 (607)
+||||||||||+++|+ |..+++ +|.+.+++...... .+.++|++|+....+.+++.++.......
T Consensus 36 ~GpnGsGKSTLl~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---- 106 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFIYKGAEEYG-----EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGL---- 106 (251)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------------
T ss_pred EeCCCCCHHHHHHHHHHHHHHhCC-----CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccccc----
Confidence 5999999999999999 653333 46666766543211 12367777765444445544432221100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC-----HHHHHHHH
Q 007344 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLD-----AFQAEKVM 149 (607)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD-----~~~~~~i~ 149 (607)
........ ....+.++..+......-..+|+++++||||++|| +..+..+.
T Consensus 107 ------~~~~~~~~------------------~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~ 162 (251)
T 2ehv_A 107 ------PSEEKFVL------------------EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLL 162 (251)
T ss_dssp -----------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHH
T ss_pred ------ccccceec------------------cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHH
Confidence 00000000 11233444444444444467999999999999997 66677799
Q ss_pred HHHHHHHhcCCeEEEEecCChhHH--------Hhhh-cceeeec
Q 007344 150 EALRQLAQDGHTVICSIHQPRGSV--------YFKF-DDIVLLT 184 (607)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~p~~~i--------~~~~-D~v~lL~ 184 (607)
++++.++++|+|||+++|+..... ..+| |++++|+
T Consensus 163 ~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 163 KLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 999999888999999999975331 5678 9999995
No 90
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.57 E-value=1.5e-16 Score=179.94 Aligned_cols=156 Identities=20% Similarity=0.209 Sum_probs=104.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCC-CCCCccceEEEECCeeCC--------CccceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA-SPRLHLSGLLEVNGKPSS--------NKAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~-~~~~~~~G~I~~~G~~~~--------~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 71 (607)
+|||||||||||++|+|+..| + +|.|+++|.++. ..+.++||++|+..+++.+||+|++.++....
T Consensus 51 vG~nGsGKSTLL~~I~Gl~~P~~-----sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 51 IGDQSSGKSSVLEALSGVALPRG-----SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCCTTSCHHHHHHHHHSCC------------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred ECCCCChHHHHHHHHhCCCCCCC-----CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 699999999999999999866 4 799999998741 12346999999999999999999998764321
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC------CCCCCHHHH
Q 007344 72 LPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP------TTGLDAFQA 145 (607)
Q Consensus 72 ~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEP------tsGLD~~~~ 145 (607)
.... -++ | ++++.++.+....|+++++||| |+|||+...
T Consensus 126 ~~~~----------------~~~----------------s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~ 170 (608)
T 3szr_A 126 AGEG----------------MGI----------------S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIG 170 (608)
T ss_dssp HCSS----------------SCC----------------C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHH
T ss_pred cCCc----------------ccc----------------c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHH
Confidence 0000 011 1 0111222222458999999999 999999999
Q ss_pred HHHHHHHHHHHh--cCCeEEEEecCChh------HHHhhh-----cceeeecCCeeeeeCCCCC
Q 007344 146 EKVMEALRQLAQ--DGHTVICSIHQPRG------SVYFKF-----DDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 146 ~~i~~~L~~la~--~g~tvi~~~H~p~~------~i~~~~-----D~v~lL~~G~iv~~G~~~~ 196 (607)
..+.++++++.+ .+.++++++|+... .+.... ..|.++.++.++..|+.++
T Consensus 171 ~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~ 234 (608)
T 3szr_A 171 YKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDK 234 (608)
T ss_dssp HHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTC
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHH
Confidence 999999999753 35688888888541 122222 3478888998888887654
No 91
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.56 E-value=2.7e-16 Score=154.73 Aligned_cols=145 Identities=18% Similarity=0.162 Sum_probs=85.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCC-CC-ccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASP-RL-HLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 78 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~-~~-~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~ 78 (607)
+||||||||||+++|+|...+.+ .+ .-.|.+.+++.... ...++++++|+..+.+. |+.||+.+
T Consensus 31 ~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~------------ 96 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYV------------ 96 (231)
T ss_dssp EESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC-CHHHHHHHHHHTTSCHH-HHHHTEEE------------
T ss_pred ECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC-CHHHHHHHHHHcCCCHH-HHhhcEEE------------
Confidence 59999999999999999544321 11 11345666654311 01123334443332222 33333211
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHH-HHHHHHHHHHhh-------CCCeEEEeCCCCCCCHHH------
Q 007344 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGE-KKRLSLACELIA-------SPSVIYADEPTTGLDAFQ------ 144 (607)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGe-rqRvsIa~aL~~-------~p~illLDEPtsGLD~~~------ 144 (607)
....++++ ++++..+.+++. +|+++++||||+++|+..
T Consensus 97 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~ 148 (231)
T 4a74_A 97 ----------------------------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 148 (231)
T ss_dssp ----------------------------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHH
T ss_pred ----------------------------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcch
Confidence 11223333 333555555555 899999999999999842
Q ss_pred ------HHHHHHHHHHHH-hcCCeEEEEecCCh---hHHHhhhcceeeecCCe
Q 007344 145 ------AEKVMEALRQLA-QDGHTVICSIHQPR---GSVYFKFDDIVLLTEGK 187 (607)
Q Consensus 145 ------~~~i~~~L~~la-~~g~tvi~~~H~p~---~~i~~~~D~v~lL~~G~ 187 (607)
..++++.|++++ +.|.|||+++|... ..+...+|+++.|++|+
T Consensus 149 ~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 149 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 237888888886 45999999999533 23677899999998753
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.56 E-value=4.4e-15 Score=174.10 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHHHHHH--hhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-cCCeEEEEecCChhHHHhhhcceee
Q 007344 107 VRGISGGEKKRLSLACEL--IASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVL 182 (607)
Q Consensus 107 ~~~LSGGerqRvsIa~aL--~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~l 182 (607)
.+++|+|+++++.+|+++ +++|+++||||||+|||+.....+ ..+++.+++ .|.++|++||+. ++..++|++..
T Consensus 719 ~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~ 796 (934)
T 3thx_A 719 LKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPT 796 (934)
T ss_dssp ----CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTT
T ss_pred HHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccce
Confidence 356899999998888888 999999999999999999999888 667788876 599999999994 46688999999
Q ss_pred ecCCeeeeeCCCCC
Q 007344 183 LTEGKLVYAGPARD 196 (607)
Q Consensus 183 L~~G~iv~~G~~~~ 196 (607)
+.+|++.+.++.++
T Consensus 797 v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 797 VNNLHVTALTTEET 810 (934)
T ss_dssp EEEEEEEEEEETTE
T ss_pred eEeeEEEEEecCCc
Confidence 99999999887765
No 93
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.55 E-value=4.6e-18 Score=166.04 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=105.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCC--CCCCHHHHHHHHHHccCCCCCCH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFF--SQLTVRETLSLAAELQLPEILSV 78 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~--~~lTV~E~l~~~~~~~~~~~~~~ 78 (607)
+||||||||||+++|+|++.+ +++|++|++.++ ..+|++++..+... .+...
T Consensus 12 ~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~--~~~~~-- 65 (211)
T 3asz_A 12 AGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD--HPDAF-- 65 (211)
T ss_dssp EESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--SGGGB--
T ss_pred ECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC--Chhhh--
Confidence 499999999999999997531 489999998776 56899888654321 11111
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHH----HHHHHHHHHhhCCCeEEEeCCCCC-------CCHHHHHH
Q 007344 79 EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEK----KRLSLACELIASPSVIYADEPTTG-------LDAFQAEK 147 (607)
Q Consensus 79 ~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGer----qRvsIa~aL~~~p~illLDEPtsG-------LD~~~~~~ 147 (607)
..+++.+.++.+++.+..+. ++..+|+||| ||++++++++.+|+++++||||++ ||+.....
T Consensus 66 --~~~~~~~~l~~~~~~~~~~~-----~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~ 138 (211)
T 3asz_A 66 --DLALYLEHAQALLRGLPVEM-----PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADER 138 (211)
T ss_dssp --CHHHHHHHHHHHHTTCCEEE-----CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHH
T ss_pred --hHHHHHHHHHHHHcCCCcCC-----CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHH
Confidence 22456677788877554433 3557899964 788999999999999999999999 99999999
Q ss_pred HHHHHHHH-HhcCCeEEEEecCCh
Q 007344 148 VMEALRQL-AQDGHTVICSIHQPR 170 (607)
Q Consensus 148 i~~~L~~l-a~~g~tvi~~~H~p~ 170 (607)
+.+.+++. .+.|+|++.++|+..
T Consensus 139 ~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 139 FIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999886 467999999999743
No 94
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.55 E-value=2.3e-16 Score=163.57 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=100.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----------cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDLFFSQLTVRETLSLAAE 69 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 69 (607)
+||||||||||+++|+|+++++ +|+|.++|.+.... +..++|++|+..+.|.+||+|++.++..
T Consensus 108 vG~nGsGKTTll~~Lagll~~~-----~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~~~ 182 (304)
T 1rj9_A 108 VGVNGVGKTTTIAKLGRYYQNL-----GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAMKA 182 (304)
T ss_dssp ECSTTSSHHHHHHHHHHHHHTT-----TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHHHhc-----CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999886 79999999876432 1248999999988888999999876532
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (607)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~ 149 (607)
... . ..+++..|+.+.. .+-++..++||++|||+++.+|+.++| +||+.+..+++
T Consensus 183 ~~~----d--------~~llDt~G~~~~~--------~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 183 RGY----D--------LLFVDTAGRLHTK--------HNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HTC----S--------EEEECCCCCCTTC--------HHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred CCC----C--------EEEecCCCCCCch--------HHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 110 0 0122233332211 122455568999999999999995444 55555556677
Q ss_pred HHHHHHHh-cCCeEEEEecCC
Q 007344 150 EALRQLAQ-DGHTVICSIHQP 169 (607)
Q Consensus 150 ~~L~~la~-~g~tvi~~~H~p 169 (607)
+.++++.+ .|.|+|++||+.
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHcCCcEEEEECCc
Confidence 77888764 489999999985
No 95
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.54 E-value=6.1e-17 Score=156.56 Aligned_cols=150 Identities=21% Similarity=0.196 Sum_probs=98.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||+++|+|.++ + +| |.++|..... ..+++||++|+. .... +++ +++..
T Consensus 7 ~G~nG~GKTTll~~l~g~~~-~-----~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~----- 66 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEVLK-S-----SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL----- 66 (189)
T ss_dssp ESCCSSCHHHHHHHHHHHHH-H-----TT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC-----
T ss_pred ECCCCChHHHHHHHHHhhcc-c-----CC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc-----
Confidence 59999999999999999987 5 57 7777765532 245799999975 1111 111 11110
Q ss_pred HHHHHHHHHHHHHHcCCCcc-ccccccCCcCCCCCHHHHHHH-HHHH---HHhhCCCeEEEeC--CCCCCCHHHHHHHHH
Q 007344 78 VEERDEYVNSLLFKLGLVSC-ADSNVGDAKVRGISGGEKKRL-SLAC---ELIASPSVIYADE--PTTGLDAFQAEKVME 150 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~-~d~~vg~~~~~~LSGGerqRv-sIa~---aL~~~p~illLDE--PtsGLD~~~~~~i~~ 150 (607)
+..+. .+..++ ++...+|+|||+++ ++++ |++.+|+++++|| ||..+|... ++
T Consensus 67 ---------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~----~~ 126 (189)
T 2i3b_A 67 ---------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF----IQ 126 (189)
T ss_dssp ---------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHH----HH
T ss_pred ---------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHH----HH
Confidence 11100 111233 24557999999988 4444 5789999999999 899999865 44
Q ss_pred HHHHHHhcCCeEEE---E-ecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344 151 ALRQLAQDGHTVIC---S-IHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (607)
Q Consensus 151 ~L~~la~~g~tvi~---~-~H~p~~~i~~~~D~v~lL~~G~iv~~G~ 193 (607)
.|+++.+...++|+ + +|+.+ ..+.|+|..+.+|+++....
T Consensus 127 ~l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~~ 170 (189)
T 2i3b_A 127 AVRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVTK 170 (189)
T ss_dssp HHHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECCS
T ss_pred HHHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeCh
Confidence 55555444555553 2 28753 34679999999999987543
No 96
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.54 E-value=2.5e-15 Score=152.47 Aligned_cols=117 Identities=24% Similarity=0.328 Sum_probs=84.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||+++|+|.+++. .+|+|.++|.++. |++|+..-+ . +.
T Consensus 31 ~Gp~GsGKSTll~~l~g~~~~~----~~G~I~~~g~~i~-------~~~~~~~~~--------------v--~q------ 77 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMIDYINQT----KSYHIITIEDPIE-------YVFKHKKSI--------------V--NQ------ 77 (261)
T ss_dssp ECSTTCSHHHHHHHHHHHHHHH----CCCEEEEEESSCC-------SCCCCSSSE--------------E--EE------
T ss_pred ECCCCccHHHHHHHHHHhCCCC----CCCEEEEcCCcce-------eecCCccee--------------e--eH------
Confidence 5999999999999999998653 1699999887642 333321100 0 00
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (607)
+.+|+.. ..+ |++||++|..+|+++++|||| |+.+...++ +. ++.|.
T Consensus 78 ---------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~~g~ 124 (261)
T 2eyu_A 78 ---------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AETGH 124 (261)
T ss_dssp ---------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HHTTC
T ss_pred ---------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-HccCC
Confidence 0233311 112 899999999999999999999 988866544 33 46799
Q ss_pred eEEEEecCChhHHHhhhcceeeecC
Q 007344 161 TVICSIHQPRGSVYFKFDDIVLLTE 185 (607)
Q Consensus 161 tvi~~~H~p~~~i~~~~D~v~lL~~ 185 (607)
+|++++|+.+ ....+||++.|..
T Consensus 125 ~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 125 LVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp EEEEEECCSS--HHHHHHHHHHTSC
T ss_pred EEEEEeCcch--HHHHHHHHhhhcC
Confidence 9999999965 5678899988854
No 97
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.54 E-value=5.5e-16 Score=183.71 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=95.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEE-EEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFA-YVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~-yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~ 79 (607)
+||||||||||||+| |++.. ..++| ||||+.. .+||.|++.
T Consensus 795 tGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~---~l~v~d~I~-------------- 836 (1022)
T 2o8b_B 795 TGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC---RLTPIDRVF-------------- 836 (1022)
T ss_dssp ECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE---EECCCSBEE--------------
T ss_pred ECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC---CCCHHHHHH--------------
Confidence 599999999999999 87642 12345 8999753 455555431
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHhc
Q 007344 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQA-EKVMEALRQLAQD 158 (607)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~-~~i~~~L~~la~~ 158 (607)
..+|+.+..+ .....+|++++ ++++|++++++|+++||||||+|+|+... ..+.++|+.++++
T Consensus 837 ----------~rig~~d~~~-----~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~ 900 (1022)
T 2o8b_B 837 ----------TRLGASDRIM-----SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET 900 (1022)
T ss_dssp ----------EECC--------------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred ----------HHcCCHHHHh-----hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc
Confidence 0112211110 01234677665 59999999999999999999999999985 5578899999876
Q ss_pred -CCeEEEEecCChhHHHhhhcceeeecCCeee--eeCCC
Q 007344 159 -GHTVICSIHQPRGSVYFKFDDIVLLTEGKLV--YAGPA 194 (607)
Q Consensus 159 -g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv--~~G~~ 194 (607)
|.++|++||++ ..+...+|++.++ +|++. +.|++
T Consensus 901 ~g~~vl~~TH~~-el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 901 IKCRTLFSTHYH-SLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp SCCEEEEECCCH-HHHHHTSSCSSEE-EEEEEEC-----
T ss_pred CCCEEEEEeCCH-HHHHHhCCcceee-cCeEEEEEecCc
Confidence 99999999996 4566778998887 58887 44543
No 98
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.53 E-value=1.7e-14 Score=137.37 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=66.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhccee
Q 007344 106 KVRGISGGEKKRLSLACELIA----SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIV 181 (607)
Q Consensus 106 ~~~~LSGGerqRvsIa~aL~~----~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~ 181 (607)
.+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|++ .+...+|+++
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~ 137 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKII 137 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEE
Confidence 467899999999999999974 4699999999999999999999999999875 46899999985 4678899998
Q ss_pred eec
Q 007344 182 LLT 184 (607)
Q Consensus 182 lL~ 184 (607)
.+.
T Consensus 138 ~v~ 140 (173)
T 3kta_B 138 GVS 140 (173)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 99
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.53 E-value=2.4e-16 Score=166.36 Aligned_cols=157 Identities=18% Similarity=0.195 Sum_probs=109.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC------------ccceEEEEccCCCCCCCCCHHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN------------KAYKFAYVRQEDLFFSQLTVRETLSLAA 68 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~------------~~~~i~yv~Q~~~l~~~lTV~E~l~~~~ 68 (607)
+||||||||||+++|+|..+++ .|.|.+.|++..+ ..+.+.++.|.+. ...+.+.-..
T Consensus 77 iG~nGaGKTTLl~~I~g~~~~~-----~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~ 146 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGASAD-----IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAF 146 (347)
T ss_dssp EECTTSSHHHHHHHHHHHSCCS-----EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcCCCCC-----EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHH
Confidence 5999999999999999999876 7999998865211 1234777777542 2222221111
Q ss_pred HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH
Q 007344 69 ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV 148 (607)
Q Consensus 69 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i 148 (607)
. ...+.+.....+ .|...--..+..+|+|| ||+++| +.+|++ |+|||+....++
T Consensus 147 ~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l 200 (347)
T 2obl_A 147 T------------ATTIAEYFRDQG----KNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSL 200 (347)
T ss_dssp H------------HHHHHHHHHTTT----CEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHH
T ss_pred H------------HHHHHHHHHhcc----ccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHH
Confidence 0 000111111111 01000012456799999 899999 688877 999999999999
Q ss_pred HHHHHHHHh--cCC-----eEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 149 MEALRQLAQ--DGH-----TVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 149 ~~~L~~la~--~g~-----tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.++++++.+ .|. ||++++|+.. ...||+++++.+|+++..|+.++
T Consensus 201 ~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 201 PKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp HHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred HHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeCcEEEEeCCHHH
Confidence 999999874 577 8999999976 45699999999999998887655
No 100
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.52 E-value=1e-14 Score=161.94 Aligned_cols=78 Identities=23% Similarity=0.311 Sum_probs=71.5
Q ss_pred cCCCC-CHHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceee
Q 007344 106 KVRGI-SGGEKKRLSLACELIASP--SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182 (607)
Q Consensus 106 ~~~~L-SGGerqRvsIa~aL~~~p--~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~l 182 (607)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||+|. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 46677 999999999999999999 99999999999999999999999999987 899999999974 4456999999
Q ss_pred ecCC
Q 007344 183 LTEG 186 (607)
Q Consensus 183 L~~G 186 (607)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.52 E-value=6.4e-16 Score=172.06 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=98.7
Q ss_pred CCCCCCcHHHHHHH--HHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCCCCCCCCCHHHHHHHHHHccCCC
Q 007344 1 MGPSGSGKTTLLNV--LAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 74 (607)
Q Consensus 1 lGpsGsGKSTLL~~--LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~ 74 (607)
+||||||||||+++ ++|..+++ +|.|.++|++.... .+.+||++|+....++ +.+ .....
T Consensus 45 ~G~nGsGKSTL~~~~ll~Gl~~~~-----~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~------l~~---~~~~~ 110 (525)
T 1tf7_A 45 SGTSGTGKTLFSIQFLYNGIIEFD-----EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK------LFI---LDASP 110 (525)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHHC-----CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS------EEE---EECCC
T ss_pred EcCCCCCHHHHHHHHHHHHHHhCC-----CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc------EEE---EecCc
Confidence 59999999999999 78998766 79999999874221 2458999987542211 100 00000
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC-----CCCHHHHHHHH
Q 007344 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT-----GLDAFQAEKVM 149 (607)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts-----GLD~~~~~~i~ 149 (607)
. +...++++.++|.+.. ++.++.|||| +|+++++||||+ +||+..+..+.
T Consensus 111 --~-----~~~~~~l~~~~l~~~~-----~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~ 165 (525)
T 1tf7_A 111 --D-----PEGQEVVGGFDLSALI-----ERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELF 165 (525)
T ss_dssp --C-----SSCCSCCSSHHHHHHH-----HHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHH
T ss_pred --c-----cchhhhhcccCHHHHH-----HHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHH
Confidence 0 0001111222221111 1122345554 588999999998 56999999999
Q ss_pred HHHHHHHhcCCeEEEEecCChhH--------HHhhhcceeeecCCe
Q 007344 150 EALRQLAQDGHTVICSIHQPRGS--------VYFKFDDIVLLTEGK 187 (607)
Q Consensus 150 ~~L~~la~~g~tvi~~~H~p~~~--------i~~~~D~v~lL~~G~ 187 (607)
++++++++.|.|||+++|++... ...+||+|++|++|+
T Consensus 166 ~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 166 RLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp HHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred HHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 99999998899999999998643 345699999998844
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.51 E-value=2.5e-15 Score=173.08 Aligned_cols=130 Identities=20% Similarity=0.195 Sum_probs=91.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC-CCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLM-ASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~-~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~ 79 (607)
+||||||||||||+|+|... +. .|.+. .....++++++| +++.+|+.|++.
T Consensus 582 ~GpNGsGKSTlLr~iagl~~~~~-----~G~~v------pa~~~~i~~v~~---i~~~~~~~d~l~-------------- 633 (765)
T 1ewq_A 582 TGPNMAGKSTFLRQTALIALLAQ-----VGSFV------PAEEAHLPLFDG---IYTRIGASDDLA-------------- 633 (765)
T ss_dssp ESCSSSSHHHHHHHHHHHHHHHT-----TTCCB------SSSEEEECCCSE---EEEECCC-------------------
T ss_pred ECCCCCChHHHHHHHHhhhhhcc-----cCcee------ehhccceeeHHH---hhccCCHHHHHH--------------
Confidence 59999999999999999863 33 34421 122345788776 455566655431
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHH-HHHHHHHH
Q 007344 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACEL--IASPSVIYADEP---TTGLDAFQA-EKVMEALR 153 (607)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL--~~~p~illLDEP---tsGLD~~~~-~~i~~~L~ 153 (607)
.++|+|+++++.+++++ +++|++++|||| |++||..+. ..+++.|+
T Consensus 634 ----------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~ 685 (765)
T 1ewq_A 634 ----------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALH 685 (765)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHH
T ss_pred ----------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHH
Confidence 14789999999999999 999999999999 999998875 56777776
Q ss_pred HHHhcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCC
Q 007344 154 QLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGP 193 (607)
Q Consensus 154 ~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~ 193 (607)
+ .|.|+|++||+. ++..++ .--+.++++.....
T Consensus 686 ~---~g~~vl~~TH~~--~l~~~~--~~~v~n~~~~~~~~ 718 (765)
T 1ewq_A 686 E---RRAYTLFATHYF--ELTALG--LPRLKNLHVAAREE 718 (765)
T ss_dssp H---HTCEEEEECCCH--HHHTCC--CTTEEEEEEEEECC
T ss_pred h---CCCEEEEEeCCH--HHHHhh--hhcceEEEEEEEEc
Confidence 6 589999999995 344444 22344566655544
No 103
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.51 E-value=7.9e-17 Score=166.96 Aligned_cols=140 Identities=15% Similarity=0.123 Sum_probs=80.7
Q ss_pred CCCCCCcHHHHHHHHHcC-cCCCCCCccceEEEECCeeCCCc--cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQ-LMASPRLHLSGLLEVNGKPSSNK--AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~-~~~~~~~~~~G~I~~~G~~~~~~--~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||+|||||+|+|+|. ..+. +| |.++|.+.... ...+++++|++.....+||.|+..+..... .
T Consensus 24 vG~nG~GKSTLl~~L~g~~~~~~-----~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~-----~ 92 (301)
T 2qnr_A 24 VGESGLGKSTLINSLFLTDLYPE-----RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAIN-----C 92 (301)
T ss_dssp EEETTSSHHHHHHHHHC------------------------------CEEEEC---CCEEEEEEEEC-------------
T ss_pred ECCCCCCHHHHHHHHhCCCccCC-----CC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcC-----c
Confidence 699999999999999997 5554 67 77777665332 235899999988888899999987754321 0
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHH
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT-GLDAFQAEKVMEALRQLA 156 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts-GLD~~~~~~i~~~L~~la 156 (607)
.+..+..++.+.+.+ +.+.+++|||||||+.+|++++ ++++||||+ |||+... +.++++.
T Consensus 93 ~e~~~~l~~~l~~~~-----------~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~ 153 (301)
T 2qnr_A 93 RDCFKTIISYIDEQF-----------ERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIH 153 (301)
T ss_dssp ---CTTHHHHHHHHH-----------HHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHT
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHH
Confidence 011111122221111 2345689999999999888875 999999998 5999873 5666665
Q ss_pred h-cCCeEEEEecCCh
Q 007344 157 Q-DGHTVICSIHQPR 170 (607)
Q Consensus 157 ~-~g~tvi~~~H~p~ 170 (607)
+ .+.++|++.||..
T Consensus 154 ~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 154 NKVNIVPVIAKADTL 168 (301)
T ss_dssp TTSCEEEEECCGGGS
T ss_pred hcCCEEEEEEeCCCC
Confidence 4 3678999999864
No 104
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.50 E-value=5e-16 Score=155.81 Aligned_cols=135 Identities=16% Similarity=0.133 Sum_probs=91.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||+++|+|++ |.+.++ ...+.++|++|++ +++.+|+.|++.+....... ..+...
T Consensus 31 ~G~~GsGKSTl~k~L~~~l---------G~~~~~-----~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~~~~~-~~~~~~ 94 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIMELL---------GQNEVE-----QRQRKVVILSQDR-FYKVLTAEQKAKALKGQYNF-DHPDAF 94 (245)
T ss_dssp ECSTTSSHHHHHHHHHHHH---------TGGGSC-----GGGCSEEEEEGGG-GBCCCCHHHHHHHHTTCCCT-TSGGGB
T ss_pred ECCCCCCHHHHHHHHHHHh---------chhccc-----ccCCceEEEeCCc-CccccCHhHhhhhhccCCCC-CCcccc
Confidence 4999999999999999965 222233 2345699999985 77789999998775432210 001111
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH 160 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~ 160 (607)
..+.+.+.++.+ .+.. +..+..+|+||+||+.+ ++++.+|+++++|||....|.. +.++ .+.
T Consensus 95 ~~~~~~~~L~~l--~~~~-----~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~--~~~ 156 (245)
T 2jeo_A 95 DNDLMHRTLKNI--VEGK-----TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM--FHL 156 (245)
T ss_dssp CHHHHHHHHHHH--HTTC-----CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT--CSE
T ss_pred cHHHHHHHHHHH--HCCC-----CeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh--cCe
Confidence 122344444443 2222 23567899999999988 5788899999999998888764 2222 378
Q ss_pred eEEEEecCC
Q 007344 161 TVICSIHQP 169 (607)
Q Consensus 161 tvi~~~H~p 169 (607)
+|++++|+.
T Consensus 157 ~i~v~th~~ 165 (245)
T 2jeo_A 157 RLFVDTDSD 165 (245)
T ss_dssp EEEEECCHH
T ss_pred EEEEECCHH
Confidence 999999973
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.50 E-value=7.6e-16 Score=162.77 Aligned_cols=151 Identities=18% Similarity=0.146 Sum_probs=90.8
Q ss_pred CCCCCCcHHHHHHHHHcCc--CCCCCCccceE-EEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQL--MASPRLHLSGL-LEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~--~~~~~~~~~G~-I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||++.|++.. +++. +...|. |+++++... ...++++++|...+++. ++.||+.+.. ..
T Consensus 137 ~G~~GsGKTTL~~~l~~~~~~~~~~-Gg~~G~vi~i~~e~~~-~~~~i~~i~q~~~~~~~-~v~~ni~~~~------~~- 206 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVMVQLPPEE-GGLNGSVIWIDTENTF-RPERIREIAQNRGLDPD-EVLKHIYVAR------AF- 206 (349)
T ss_dssp EESTTSSHHHHHHHHHHHTTSCGGG-TSCSCEEEEEESSSCC-CHHHHHHHHHTTTCCHH-HHGGGEEEEE------CC-
T ss_pred ECCCCCCHHHHHHHHHHHhccchhc-CCCCCeEEEEeCCCCC-CHHHHHHHHHHcCCCHH-HHhhCEEEEe------cC-
Confidence 4999999999999999987 3331 112367 788876531 12345566665544332 3333332210 00
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh-------hCCCeEEEeCCCCCCCHHH------
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-------ASPSVIYADEPTTGLDAFQ------ 144 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~-------~~p~illLDEPtsGLD~~~------ 144 (607)
-|++++|++.++++++ .+|+++++||||+++|+..
T Consensus 207 --------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~ 254 (349)
T 1pzn_A 207 --------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGAL 254 (349)
T ss_dssp --------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTH
T ss_pred --------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccH
Confidence 1455666666666666 6899999999999999852
Q ss_pred ------HHHHHHHHHHHHh-cCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCC
Q 007344 145 ------AEKVMEALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPA 194 (607)
Q Consensus 145 ------~~~i~~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~ 194 (607)
..++++.|+++++ .|.|||+++|... .....++.......|+++.++..
T Consensus 255 ~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 255 AERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCc
Confidence 4567777788774 5899999999854 44444556667778888877653
No 106
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.48 E-value=2.4e-14 Score=151.55 Aligned_cols=85 Identities=14% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCcCC-CCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHH
Q 007344 104 DAKVR-GISGGEKKRLSLACELI---------ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSV 173 (607)
Q Consensus 104 ~~~~~-~LSGGerqRvsIa~aL~---------~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i 173 (607)
+..++ .+|||||||++||++|+ .+|+||+|||||++||+..+..+++.++++. .|+|+++|. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 44566 79999999999999999 8999999999999999999999999998874 689999994 32
Q ss_pred HhhhcceeeecCCeeeeeCCCCC
Q 007344 174 YFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 174 ~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+|+++++++|+++..|++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~ 353 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEM 353 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTT
T ss_pred --cCCEEEEEECCEEEecCCHHH
Confidence 789999999999999999876
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.47 E-value=1.4e-14 Score=153.21 Aligned_cols=117 Identities=24% Similarity=0.293 Sum_probs=80.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~ 79 (607)
+|||||||||||++|+|.++++. +|.|...+.+.... ....+++.|.......+|..+
T Consensus 129 ~GptGSGKTTlL~~l~g~~~~~~----~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~----------------- 187 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLDYLNNTK----YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSE----------------- 187 (356)
T ss_dssp ECSTTSCHHHHHHHHHHHHHHHC----CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHH-----------------
T ss_pred ECCCCCCHHHHHHHHHhcccCCC----CcEEEEccCcHHhhhhccccceeeeeeccccCCHHH-----------------
Confidence 59999999999999999987641 35554433333211 122345555432222122111
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (607)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (607)
+||++|..+|++|++|||| |..+ ++.+.++++.|
T Consensus 188 ---------------------------------------~La~aL~~~PdvillDEp~---d~e~----~~~~~~~~~~G 221 (356)
T 3jvv_A 188 ---------------------------------------ALRSALREDPDIILVGEMR---DLET----IRLALTAAETG 221 (356)
T ss_dssp ---------------------------------------HHHHHTTSCCSEEEESCCC---SHHH----HHHHHHHHHTT
T ss_pred ---------------------------------------HHHHHhhhCcCEEecCCCC---CHHH----HHHHHHHHhcC
Confidence 8999999999999999999 6555 44445557789
Q ss_pred CeEEEEecCChhHHHhhhcceeeecCC
Q 007344 160 HTVICSIHQPRGSVYFKFDDIVLLTEG 186 (607)
Q Consensus 160 ~tvi~~~H~p~~~i~~~~D~v~lL~~G 186 (607)
++|++++|+.+ .+ ..+||++.|..|
T Consensus 222 ~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 222 HLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp CEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred CEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 99999999975 34 778999999654
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.47 E-value=1e-13 Score=141.60 Aligned_cols=141 Identities=17% Similarity=0.144 Sum_probs=95.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||++.|++... .|++ +.|.+... ..++.|+..++.. ..+.+.+. .+. .....
T Consensus 36 ~G~~GsGKTtl~~~l~~~~~-------~g~~-~~g~~~~~-~~~v~~~~~e~~~---~~~~~r~~---~~g--~~~~~-- 96 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLAAQIA-------GGPD-LLEVGELP-TGPVIYLPAEDPP---TAIHHRLH---ALG--AHLSA-- 96 (279)
T ss_dssp EESTTSSHHHHHHHHHHHHH-------TCCC-TTCCCCCC-CCCEEEEESSSCH---HHHHHHHH---HHH--TTSCH--
T ss_pred EcCCCCCHHHHHHHHHHHHh-------cCCC-cCCCccCC-CccEEEEECCCCH---HHHHHHHH---HHH--hhcCh--
Confidence 49999999999999998653 2443 23433321 2357888776532 01212211 111 11222
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHHHH---HHHHHHHHHH
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTT--GLDAFQA---EKVMEALRQL 155 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPts--GLD~~~~---~~i~~~L~~l 155 (607)
..++++++.+++.+.. +..+..+|+||++++ ++++.+|+++++||||+ ++|.... .++++.|+++
T Consensus 97 --~~~~~~~~~l~l~~~~-----~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l 166 (279)
T 1nlf_A 97 --EERQAVADGLLIQPLI-----GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAI 166 (279)
T ss_dssp --HHHHHHHHHEEECCCT-----TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHH
T ss_pred --hhhhhccCceEEeecC-----CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHH
Confidence 2355677888886543 335678999998876 58889999999999999 9998544 8888999998
Q ss_pred H-hcCCeEEEEecCCh
Q 007344 156 A-QDGHTVICSIHQPR 170 (607)
Q Consensus 156 a-~~g~tvi~~~H~p~ 170 (607)
+ +.|.|||+++|+..
T Consensus 167 ~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 167 AADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHCCEEEEEEEC--
T ss_pred HHHcCCEEEEEecCCC
Confidence 7 56999999999853
No 109
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.44 E-value=1.8e-14 Score=166.82 Aligned_cols=140 Identities=12% Similarity=0.086 Sum_probs=94.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||||+|+|...... .| ..+.....+++++.| +++.+++.|++...
T Consensus 613 tGpNGsGKSTlLr~iagl~~~~q----~G------~~vpa~~~~i~~~~~---i~~~~~~~d~l~~~------------- 666 (800)
T 1wb9_A 613 TGPNMGGKSTYMRQTALIALMAY----IG------SYVPAQKVEIGPIDR---IFTRVGAADDLASG------------- 666 (800)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHHT----TT------CCBSSSEEEECCCCE---EEEEEC---------------------
T ss_pred ECCCCCChHHHHHHHHHHHHHHh----cC------cccchhcccceeHHH---HHhhCCHHHHHHhh-------------
Confidence 59999999999999999742210 12 111112234666655 45556665554221
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-c
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKV-MEALRQLAQ-D 158 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i-~~~L~~la~-~ 158 (607)
+ ..+|+|++ +++.+...+++|+++|||||++|+|+.....+ ..+++.+++ .
T Consensus 667 -------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~ 719 (800)
T 1wb9_A 667 -------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI 719 (800)
T ss_dssp -----------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT
T ss_pred -------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc
Confidence 1 13566655 45555567899999999999999999888776 788888887 5
Q ss_pred CCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCC
Q 007344 159 GHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPAR 195 (607)
Q Consensus 159 g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~ 195 (607)
|.++|++||++. +..++|++..+.+|++.+....+
T Consensus 720 g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~~~ 754 (800)
T 1wb9_A 720 KALTLFATHYFE--LTQLPEKMEGVANVHLDALEHGD 754 (800)
T ss_dssp CCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEETT
T ss_pred CCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEcCC
Confidence 999999999963 45689999888999887765433
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.44 E-value=1e-14 Score=143.23 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=65.3
Q ss_pred CCCHHHHHHHHHHHHHhhCCC--eEEEeCCCCCC--CHHHHHHHHHHHHHHH-hcCCeEEEEecCCh-------hHHHhh
Q 007344 109 GISGGEKKRLSLACELIASPS--VIYADEPTTGL--DAFQAEKVMEALRQLA-QDGHTVICSIHQPR-------GSVYFK 176 (607)
Q Consensus 109 ~LSGGerqRvsIa~aL~~~p~--illLDEPtsGL--D~~~~~~i~~~L~~la-~~g~tvi~~~H~p~-------~~i~~~ 176 (607)
..|.+|+++...+.....+|+ ++++||||+++ |+....++++.|++++ +.|.|||+++|+.. ..+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchhee
Confidence 459999998888888788999 99999999887 9999999999999997 45899999999973 347788
Q ss_pred hcceeeecCC
Q 007344 177 FDDIVLLTEG 186 (607)
Q Consensus 177 ~D~v~lL~~G 186 (607)
+|++++|+..
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
No 111
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.43 E-value=2.1e-16 Score=151.57 Aligned_cols=165 Identities=14% Similarity=0.102 Sum_probs=107.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||+++|++. . +|.+.++|.+.... ...++++|.....+..|+++++.+.+.......
T Consensus 8 ~G~~GaGKSTl~~~L~~~---~-----~g~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 73 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAAQ---L-----DNSAYIEGDIINHM-VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ----- 73 (189)
T ss_dssp ECSTTSSHHHHHHHHHHH---S-----SSEEEEEHHHHHTT-CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred ECCCCCcHHHHHHHHhcc---c-----CCeEEEcccchhhh-hccccccCccchhHHHHHHHHHHHHHHHHHhcC-----
Confidence 599999999999999972 2 58899988765332 235677776544555688888876543210000
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCC--CHHHHHHHHHHH------HHhhCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGI--SGGEKKRLSLAC------ELIASPSVIYADEPTTGLDAFQAEKVMEAL 152 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~L--SGGerqRvsIa~------aL~~~p~illLDEPtsGLD~~~~~~i~~~L 152 (607)
...+++.+.. . ...+..+.+ |+|++||+.++. +++.+|+...+|+ |||+..... .+.+
T Consensus 74 ----~~~ild~~~~-----~-~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~ 139 (189)
T 2bdt_A 74 ----NDVVLDYIAF-----P-DEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEF 139 (189)
T ss_dssp ----CEEEEESCCC-----H-HHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHH
T ss_pred ----CcEEEeeccC-----H-HHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHH
Confidence 0000110000 0 000111234 888888888888 9999999888884 899988888 8888
Q ss_pred HHHHhcCCeEEEEecC-ChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 153 RQLAQDGHTVICSIHQ-PRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 153 ~~la~~g~tvi~~~H~-p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
+.+.+.+.++|.++|. +. ++.+.+|+|+ ++|+++..|+++.
T Consensus 140 ~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 140 ESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDP 181 (189)
T ss_dssp HHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC-----
T ss_pred hhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCc
Confidence 8887678899999998 64 6788899998 9999999998765
No 112
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.42 E-value=1e-13 Score=162.18 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=65.7
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHh-cCCeEEEEecCChhHHHhhhcceee-ec
Q 007344 108 RGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM-EALRQLAQ-DGHTVICSIHQPRGSVYFKFDDIVL-LT 184 (607)
Q Consensus 108 ~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~-~~L~~la~-~g~tvi~~~H~p~~~i~~~~D~v~l-L~ 184 (607)
..+|+|++|++.|+++ +++|+++||||||+|||+.....+. .+++.+++ .|.|+|++||++ ++..++|+.-- +.
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~ 810 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVG 810 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEE
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceE
Confidence 4689999999999998 8999999999999999999999997 78888875 699999999996 34566776532 44
Q ss_pred CCeeee
Q 007344 185 EGKLVY 190 (607)
Q Consensus 185 ~G~iv~ 190 (607)
++++.+
T Consensus 811 n~~~~~ 816 (918)
T 3thx_B 811 NYHMGF 816 (918)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555544
No 113
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.39 E-value=7.4e-13 Score=140.93 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=67.7
Q ss_pred CcCCCCCHHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhh
Q 007344 105 AKVRGISGGEKKRL------SLACELIAS-PSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKF 177 (607)
Q Consensus 105 ~~~~~LSGGerqRv------sIa~aL~~~-p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~ 177 (607)
..++.+|||||||+ ++|++|+.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||+++|++. +...+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhC
Confidence 45678999999988 567888999 999999999999999999999999999753 468999999974 56889
Q ss_pred cceeeec
Q 007344 178 DDIVLLT 184 (607)
Q Consensus 178 D~v~lL~ 184 (607)
|++++++
T Consensus 353 d~~~~l~ 359 (371)
T 3auy_A 353 DVIINVK 359 (371)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999996
No 114
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.32 E-value=7.8e-13 Score=128.95 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=60.2
Q ss_pred CCHHH--HHHHHHHHHHhhC-CCeEEEeCCCCCCCHHH--------HHHHHHHHHHHHh-cCCeEEEEecCChh------
Q 007344 110 ISGGE--KKRLSLACELIAS-PSVIYADEPTTGLDAFQ--------AEKVMEALRQLAQ-DGHTVICSIHQPRG------ 171 (607)
Q Consensus 110 LSGGe--rqRvsIa~aL~~~-p~illLDEPtsGLD~~~--------~~~i~~~L~~la~-~g~tvi~~~H~p~~------ 171 (607)
.|+++ ++++..+++++.+ |+++++||||+++|+.. ..++++.|+++++ .|.|||+++|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 44453 5688888899986 99999999999999743 3556777888875 48999999997542
Q ss_pred ------HHHhhhcceeeecCC
Q 007344 172 ------SVYFKFDDIVLLTEG 186 (607)
Q Consensus 172 ------~i~~~~D~v~lL~~G 186 (607)
.+...+|.+++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 567889999999754
No 115
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.31 E-value=1.5e-15 Score=152.29 Aligned_cols=144 Identities=22% Similarity=0.226 Sum_probs=94.9
Q ss_pred CCCCCCcHHHHHHHHH---cCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCC---
Q 007344 1 MGPSGSGKTTLLNVLA---GQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLP--- 73 (607)
Q Consensus 1 lGpsGsGKSTLL~~La---G~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~--- 73 (607)
+||||||||||+++|+ |...++ .|+|.++|.+.... ...+.+++|+..+++..|+.|++.........
T Consensus 33 ~G~~GsGKSTl~k~La~~lg~~~~~-----~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~~ 107 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIAQNFGLQHLS-----SGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQHW 107 (246)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCCCEE-----HHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSCE
T ss_pred ECCCCCCHHHHHHHHHHHhCCeEec-----HHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCeE
Confidence 5999999999999999 987765 78887776543221 22356677888888888999999875421000
Q ss_pred --CCCCHHHHHHHHHHHHH--HcCCCccc-------cccccCCcCCCCCHHHHHHHHHHHHH-hhCCCeEEEe----CCC
Q 007344 74 --EILSVEERDEYVNSLLF--KLGLVSCA-------DSNVGDAKVRGISGGEKKRLSLACEL-IASPSVIYAD----EPT 137 (607)
Q Consensus 74 --~~~~~~~~~~~v~~~l~--~lgL~~~~-------d~~vg~~~~~~LSGGerqRvsIa~aL-~~~p~illLD----EPt 137 (607)
....... ..++.+.+ .+++.-.. -..+.++.+..||| |+ +++ +.+|+++++| |||
T Consensus 108 il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 108 LLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp EEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred EEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence 0111111 11222221 12200000 01223445678999 66 677 9999999999 999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc
Q 007344 138 TGLDAFQAEKVMEALRQLAQD 158 (607)
Q Consensus 138 sGLD~~~~~~i~~~L~~la~~ 158 (607)
+|||..+...+.+.++++.++
T Consensus 179 ~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp BCCGGGSHHHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999988765
No 116
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.31 E-value=2.8e-16 Score=164.07 Aligned_cols=147 Identities=17% Similarity=0.131 Sum_probs=94.3
Q ss_pred CCCCCCcHHHHHHHHHcCc--------CCCCCCccceEEEECCeeCCCcc--------------------ceEEEE---c
Q 007344 1 MGPSGSGKTTLLNVLAGQL--------MASPRLHLSGLLEVNGKPSSNKA--------------------YKFAYV---R 49 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~--------~~~~~~~~~G~I~~~G~~~~~~~--------------------~~i~yv---~ 49 (607)
+|+||||||||||.|.|.. .++ .|+|.++|.++.... ..++++ +
T Consensus 10 ~G~~GaGKTTll~~l~~~~~~~~~aVi~~d-----~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNEQHGYKIAVIENE-----FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EESSSSSCHHHHHHHHHSCCCCCEEEECSS-----CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHhhcCCCcEEEEEec-----CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 4999999999999999986 334 688999988764321 225666 5
Q ss_pred cCCCCCCCCCHHHHHHHHHHccCCCC---CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhh
Q 007344 50 QEDLFFSQLTVRETLSLAAELQLPEI---LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIA 126 (607)
Q Consensus 50 Q~~~l~~~lTV~E~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~ 126 (607)
|+..+++..+|.||..++........ .+......+++.++..+++.+..+.. .++|+||+||+..++.++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 66655566677776543210000000 00000011122233334443333221 2689999999998898889
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (607)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~ 170 (607)
+|+++ ||| .++.+.++++. .+.+|++++|.+.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 77888888875 5889999999864
No 117
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.30 E-value=3.4e-12 Score=138.38 Aligned_cols=76 Identities=21% Similarity=0.254 Sum_probs=68.9
Q ss_pred CCCCCHHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceee
Q 007344 107 VRGISGGEKKRLSLACELI----ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL 182 (607)
Q Consensus 107 ~~~LSGGerqRvsIa~aL~----~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~l 182 (607)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|+++|++ .....+|+++.
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEE
Confidence 3459999999999999999 57999999999999999999999999999876688999999994 45678999999
Q ss_pred ec
Q 007344 183 LT 184 (607)
Q Consensus 183 L~ 184 (607)
+.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 95
No 118
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=1.1e-13 Score=149.27 Aligned_cols=137 Identities=18% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+|+||||||||+|+|+|...+..+ .|.+.+++.+ ......+++++|++.+++.+||.||+.+..... ..+
T Consensus 37 vG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~ 106 (418)
T 2qag_C 37 VGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSN 106 (418)
T ss_dssp ECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC------CEEEEEEECC----------------
T ss_pred ECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chh
Confidence 699999999999999998764321 2222222211 111245899999988888899999988764321 011
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCC---eEEEeCCC-CCCCHHHHHHHHHHHHHHH
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPS---VIYADEPT-TGLDAFQAEKVMEALRQLA 156 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~---illLDEPt-sGLD~~~~~~i~~~L~~la 156 (607)
..+.+.+.++ ..++.+++||++||++++.+|+ ++++|||| +|||+... +.++++.
T Consensus 107 ~~~~i~~~i~-----------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~ 165 (418)
T 2qag_C 107 CWQPVIDYID-----------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH 165 (418)
T ss_dssp -CHHHHHHHH-----------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT
T ss_pred hHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh
Confidence 1111111121 1355677889999999999999 99999999 69998873 4445554
Q ss_pred hcCCeEEEEecCC
Q 007344 157 QDGHTVICSIHQP 169 (607)
Q Consensus 157 ~~g~tvi~~~H~p 169 (607)
. +.++|+++|..
T Consensus 166 ~-~v~iIlVinK~ 177 (418)
T 2qag_C 166 E-KVNIIPLIAKA 177 (418)
T ss_dssp T-TSEEEEEEEST
T ss_pred c-cCcEEEEEEcc
Confidence 4 77888887763
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.29 E-value=5e-14 Score=139.19 Aligned_cols=125 Identities=14% Similarity=0.156 Sum_probs=85.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCH----HHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTV----RETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV----~E~l~~~~~~~~~~~ 75 (607)
+||||||||||+|+|+|..+++ ...|.|.+++.+.... ...++|++|++..|+.+|+ .|++.+....
T Consensus 22 ~GpsGsGKSTLlk~L~g~~~p~---~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~----- 93 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKTQPLY---DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNY----- 93 (219)
T ss_dssp ECCTTSCHHHHHHHHHHHSCTT---TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE-----
T ss_pred ECCCCCCHHHHHHHHhccCCCC---ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhcc-----
Confidence 5999999999999999998752 2478999988765433 3458999998665554444 2222211100
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (607)
.+.| +++ ..+++..+++++|| ||+..+..+.+.+.
T Consensus 94 --------------------------------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-- 128 (219)
T 1s96_A 94 --------------------------------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-- 128 (219)
T ss_dssp --------------------------------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT--
T ss_pred --------------------------------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc--
Confidence 0111 111 33445567999999 99999999999876
Q ss_pred HhcCCeEEEEecCChhHHHhhhcceeeecCC
Q 007344 156 AQDGHTVICSIHQPRGSVYFKFDDIVLLTEG 186 (607)
Q Consensus 156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 186 (607)
++.||++++|++. .+.. |+ +.+|
T Consensus 129 --~~~tI~i~th~~~-~l~~---Rl--~~rG 151 (219)
T 1s96_A 129 --HARSIFILPPSKI-ELDR---RL--RGRG 151 (219)
T ss_dssp --TCEEEEEECSSHH-HHHH---HH--HTTS
T ss_pred --CCEEEEEECCCHH-HHHH---HH--HHcC
Confidence 5889999999964 3332 43 6666
No 120
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.27 E-value=1.7e-12 Score=137.03 Aligned_cols=123 Identities=23% Similarity=0.165 Sum_probs=85.3
Q ss_pred CCCCCCcHHHHHHHHHcCcC-CCCCCccceEEEEC-CeeCCC-ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM-ASPRLHLSGLLEVN-GKPSSN-KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~-~~~~~~~~G~I~~~-G~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||+|+|+|... +. +|+|.++ |..... ....+++++|+..++++.||+|+ .+ ...+
T Consensus 221 vG~sG~GKSTLln~L~g~~~~~~-----~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~-----~l---~~l~ 287 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQNEIL-----TNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF-----GL---WHLE 287 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCSSCCC-----CC-------------CCCEEEECTTSCEEEECHHHHTC-----CC---CCCC
T ss_pred ECCCCccHHHHHHHHhccccccc-----cCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh-----hh---cCCC
Confidence 69999999999999999987 65 7999887 654422 23569999999999999899884 11 1345
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
.++..+.+.++++.+|+.+..| ..+.++| ||+||++||+++ +++.-.....++++++++
T Consensus 288 ~~e~~~~~~e~l~~~gl~~f~~-----~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~e~~~ 346 (358)
T 2rcn_A 288 PEQITQGFVEFHDYLGHCKYRD-----CKHDADP-GCAIREAVENGA---------------IAETRFENYHRILESMAQ 346 (358)
T ss_dssp HHHHHHTSGGGGGGTTCSSSTT-----CCSSSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHcCCchhcC-----CCcccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHHHHHh
Confidence 6666777889999999965554 4567899 999999999864 344445555666676653
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.27 E-value=2.3e-15 Score=160.00 Aligned_cols=85 Identities=9% Similarity=-0.106 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHHh-hCCCeEEEeC---CC------CCCCHHHHHHHHHHHHHHH-hcCCeEEEEecCChhHHHhh
Q 007344 108 RGISGGEKKRLSLACELI-ASPSVIYADE---PT------TGLDAFQAEKVMEALRQLA-QDGHTVICSIHQPRGSVYFK 176 (607)
Q Consensus 108 ~~LSGGerqRvsIa~aL~-~~p~illLDE---Pt------sGLD~~~~~~i~~~L~~la-~~g~tvi~~~H~p~~~i~~~ 176 (607)
..+|+|+++|..+++++. .+|++++||| |+ .++|...+..+.+.|+++. +.|.++++++|. . ....+
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~ 334 (365)
T 1lw7_A 257 FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRY 334 (365)
T ss_dssp HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHH
T ss_pred HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHH
Confidence 346777788888888775 5999999999 65 5899999999999999976 458899999874 3 56677
Q ss_pred hcceeeecCCeeeeeCCCCC
Q 007344 177 FDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 177 ~D~v~lL~~G~iv~~G~~~~ 196 (607)
+|++.++++ ++..|..++
T Consensus 335 ~~~i~~i~~--~l~~~~~~~ 352 (365)
T 1lw7_A 335 NQVKAVIEK--VLNEEEISE 352 (365)
T ss_dssp HHHHHHHHH--HTSCCCCSS
T ss_pred HHHHHHHHH--HhcccchhH
Confidence 888887754 445555544
No 122
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.26 E-value=1.1e-14 Score=139.34 Aligned_cols=142 Identities=13% Similarity=0.038 Sum_probs=87.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 77 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~ 77 (607)
+||||||||||+++|+|. ++ .|.|.++|.+... ....++|++|+.. +.+||.|++.+.+........
T Consensus 15 ~G~~GsGKSTl~~~La~~--~~-----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~~~~~- 84 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANL--PG-----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYAKEGY- 84 (191)
T ss_dssp EECTTSCHHHHHHHHHTC--SS-----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHHHTSC-
T ss_pred ECCCCCCHHHHHHHHHhc--cC-----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHhccCC-
Confidence 599999999999999997 33 6899999876422 1223677877654 456889988765432100000
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
...++.++..+++..... . +..+..+|+|++||+.++|++.++|+++ +|+.....+.+.++.+..
T Consensus 85 ----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~ 149 (191)
T 1zp6_A 85 ----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA 149 (191)
T ss_dssp ----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred ----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence 000111111111111110 0 1234579999999999999999999886 688877777777766543
Q ss_pred cCCeEEEEec
Q 007344 158 DGHTVICSIH 167 (607)
Q Consensus 158 ~g~tvi~~~H 167 (607)
.+..+|.+++
T Consensus 150 ~~~~~i~t~~ 159 (191)
T 1zp6_A 150 FEHHVLPVSG 159 (191)
T ss_dssp GGGGEEECTT
T ss_pred ccccEEECCC
Confidence 3334444443
No 123
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.22 E-value=3.8e-12 Score=135.56 Aligned_cols=115 Identities=27% Similarity=0.336 Sum_probs=83.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVE 79 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~ 79 (607)
+||||||||||+++|+|.+++.. +|+|.+.|.+.... ...++||+|..
T Consensus 142 vG~~GsGKTTll~~l~~~~~~~~----~g~I~~~e~~~e~~~~~~~~~v~Q~~--------------------------- 190 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMIDYINQTK----SYHIITIEDPIEYVFKHKKSIVNQRE--------------------------- 190 (372)
T ss_dssp ECSSSSSHHHHHHHHHHHHHHHS----CCEEEEEESSCCSCCCCSSSEEEEEE---------------------------
T ss_pred ECCCCCCHHHHHHHHHhhcCcCC----CcEEEEecccHhhhhccCceEEEeee---------------------------
Confidence 59999999999999999987531 58887766555321 23477888741
Q ss_pred HHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344 80 ERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (607)
Q Consensus 80 ~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (607)
+|+. ...+ +.+|+.+|..+|+++++|||+ |+.+... .++. +..|
T Consensus 191 ------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~~g 234 (372)
T 2ewv_A 191 ------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AETG 234 (372)
T ss_dssp ------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HTTT
T ss_pred ------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-HhcC
Confidence 2321 1123 469999999999999999999 7766443 3433 4568
Q ss_pred CeEEEEecCChhHHHhhhcceeeec
Q 007344 160 HTVICSIHQPRGSVYFKFDDIVLLT 184 (607)
Q Consensus 160 ~tvi~~~H~p~~~i~~~~D~v~lL~ 184 (607)
.+++.++|..+ +...+||++.|.
T Consensus 235 ~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 235 HLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp CEEEECCCCCS--HHHHHHHHHHTS
T ss_pred CEEEEEECcch--HHHHHHHHHHhc
Confidence 99999999853 677889987764
No 124
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.21 E-value=1.9e-12 Score=125.23 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=56.9
Q ss_pred HHHHHHHHcCCCccccccccCCcCCCCCHHHHHH-HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCe
Q 007344 84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKR-LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT 161 (607)
Q Consensus 84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqR-vsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~t 161 (607)
.+.+.++..++... .+++ +...+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 128 ~~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 128 QMIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 45556666666421 1222 466799999999 89999999999999999999999999999999999998766644
No 125
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.18 E-value=1.1e-13 Score=131.56 Aligned_cols=133 Identities=21% Similarity=0.251 Sum_probs=82.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------c-ceEE----EEccCCCCCCCCCHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------A-YKFA----YVRQEDLFFSQLTVRETLSLA 67 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------~-~~i~----yv~Q~~~l~~~lTV~E~l~~~ 67 (607)
+|+||||||||+++|+|.+++.+ ...|.|.++|.++... + +.+| +++|+..++ +++
T Consensus 8 vG~SGsGKSTL~~~L~~~~~~~g--~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~----- 76 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMPILRERG--LRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR----- 76 (171)
T ss_dssp EESCHHHHHHHHHHHHHHHHHTT--CCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE-----
T ss_pred ECCCCCCHHHHHHHHHHHhhhcC--CceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec-----
Confidence 59999999999999999987642 1269999999873221 1 2356 888877655 110
Q ss_pred HHccCCCCCCHHHHHHHHHHHHHH-cCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeE-------EEeCCCCC
Q 007344 68 AELQLPEILSVEERDEYVNSLLFK-LGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVI-------YADEPTTG 139 (607)
Q Consensus 68 ~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~il-------lLDEPtsG 139 (607)
. .. +....++++++. +. -.|+.+++ +||||||||++|||+++.+|++. .-|.|..+
T Consensus 77 -----~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~ 140 (171)
T 2f1r_A 77 -----V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDG 140 (171)
T ss_dssp -----C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSS
T ss_pred -----C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCCccc
Confidence 0 01 111134555555 42 24687775 59999999999999999999873 23555322
Q ss_pred ---CCHHHHHHHHHHHHHHHhcCC
Q 007344 140 ---LDAFQAEKVMEALRQLAQDGH 160 (607)
Q Consensus 140 ---LD~~~~~~i~~~L~~la~~g~ 160 (607)
+|......+.+.+.+...+|.
T Consensus 141 ~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 141 HKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SCEECTTCHHHHHHHHHHHHTC--
T ss_pred CcccCcccHHHHHHHHHHHHhccC
Confidence 344556777777766665553
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=1.5e-11 Score=128.90 Aligned_cols=150 Identities=11% Similarity=0.052 Sum_probs=79.4
Q ss_pred CCCCCCcHHHHHHHHHc-CcCCCCCCccceEEEECCeeCCCc---cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAG-QLMASPRLHLSGLLEVNGKPSSNK---AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEIL 76 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG-~~~~~~~~~~~G~I~~~G~~~~~~---~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 76 (607)
.||||+|||||+++|+| +..++ .|++.++|.+.... ...+++++|.+.+.-..+ + . ...
T Consensus 42 ~Gp~G~GKTtl~~~la~~l~~~~-----~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~ 104 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLESIFGPG-----VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GNN 104 (354)
T ss_dssp ECSTTSSHHHHHHTHHHHHSCTT-----CCC------------------CCEECSSEEEECCC----------------C
T ss_pred ECCCCCCHHHHHHHHHHHHcCCC-----CCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CCc
Confidence 49999999999999999 55554 68888888765422 234788888764321111 0 0 001
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (607)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (607)
.....++.++++.+..++. . .. .+|| +..+|+++++|||++ ||+.+...+.+.+.+..
T Consensus 105 ~~~~~~~~i~~~~~~~~~~----~-----~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRIVIQELLKEVAQMEQVD----F-----QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHHHHHHHHHHHTTTTC---------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHHhcccc----c-----cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 1111222233222222221 1 11 4566 788999999999999 99999999999998864
Q ss_pred hcCCeEEEEecCChhHHHhhhcceeeecCCeeeeeCCCCC
Q 007344 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVYAGPARD 196 (607)
Q Consensus 157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~~G~~~~ 196 (607)
.+.++|+++|++......+.+ ....+...++..
T Consensus 163 -~~~~~Il~t~~~~~l~~~l~s------R~~~~~~~~~~~ 195 (354)
T 1sxj_E 163 -KNIRLIMVCDSMSPIIAPIKS------QCLLIRCPAPSD 195 (354)
T ss_dssp -TTEEEEEEESCSCSSCHHHHT------TSEEEECCCCCH
T ss_pred -CCCEEEEEeCCHHHHHHHHHh------hceEEecCCcCH
Confidence 367999999997643222223 334555555543
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.17 E-value=1.4e-11 Score=116.97 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=43.3
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhH
Q 007344 125 IASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS 172 (607)
Q Consensus 125 ~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~ 172 (607)
+.+|++|+||||++ ++|+.....+.+++.+..++|+++|+++|.+..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 45999999999985 9999999999999999888899999999998654
No 128
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.16 E-value=8.4e-12 Score=123.49 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=48.1
Q ss_pred CCHHHHHH-HHHHHHHh--hCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHh-cCCeEEEEecCChhH-
Q 007344 110 ISGGEKKR-LSLACELI--ASPSVIYADEPTTGLDAF-------Q-----AEKVMEALRQLAQ-DGHTVICSIHQPRGS- 172 (607)
Q Consensus 110 LSGGerqR-vsIa~aL~--~~p~illLDEPtsGLD~~-------~-----~~~i~~~L~~la~-~g~tvi~~~H~p~~~- 172 (607)
.++.+..+ +.-+.+++ .+|+++++|||++.+|+. . ..++++.|+++++ .|.|||+++|.....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~ 178 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVD 178 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCC
Confidence 45554432 33333444 489999999999999975 3 3456777777764 599999999964321
Q ss_pred -----------------HHhhhcceeeecCC
Q 007344 173 -----------------VYFKFDDIVLLTEG 186 (607)
Q Consensus 173 -----------------i~~~~D~v~lL~~G 186 (607)
+...+|.+++|+.|
T Consensus 179 ~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 179 GAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------------------CCTTCEEEEEEEC
T ss_pred CccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 22278999999765
No 129
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.14 E-value=1.6e-11 Score=113.86 Aligned_cols=47 Identities=6% Similarity=0.110 Sum_probs=38.8
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCe-EEEEecCChhH
Q 007344 125 IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHT-VICSIHQPRGS 172 (607)
Q Consensus 125 ~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~t-vi~~~H~p~~~ 172 (607)
+.+|++|++|||++ +|...+..+.+++.++.++|++ +|+++|.+..+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQ 128 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTT
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHH
Confidence 46799999999998 5555588899999999888888 89999965443
No 130
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.09 E-value=8.5e-11 Score=124.62 Aligned_cols=119 Identities=19% Similarity=0.201 Sum_probs=84.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---ccceEEEEc-cCCCCCCCCCHHHHHHHHHHccCCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---KAYKFAYVR-QEDLFFSQLTVRETLSLAAELQLPEIL 76 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---~~~~i~yv~-Q~~~l~~~lTV~E~l~~~~~~~~~~~~ 76 (607)
+||||||||||+|+|+|.++++ +|.|.++|...-. ..+.++|++ |++.+
T Consensus 181 vG~sGsGKSTll~~l~~~~~~~-----~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~---------------------- 233 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQEIPFD-----QRLITIEDVPELFLPDHPNHVHLFYPSEAKE---------------------- 233 (361)
T ss_dssp EESSSSCHHHHHHHHHTTSCTT-----SCEEEEESSSCCCCTTCSSEEEEECC---------------------------
T ss_pred ECCCCCCHHHHHHHHHhcCCCC-----ceEEEECCccccCccccCCEEEEeecCcccc----------------------
Confidence 5999999999999999999886 7999999853211 234588888 54321
Q ss_pred CHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344 77 SVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (607)
Q Consensus 77 ~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (607)
+++++...|..|+.++..+|+.+++||++. .++.+.++.+.
T Consensus 234 --------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~ 274 (361)
T 2gza_A 234 --------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAA 274 (361)
T ss_dssp -------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHH
T ss_pred --------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHh
Confidence 012222456667777777899999999986 34556676665
Q ss_pred hcCCeEEEEecCChhHHHhhhcceeeecCCe
Q 007344 157 QDGHTVICSIHQPRGSVYFKFDDIVLLTEGK 187 (607)
Q Consensus 157 ~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~ 187 (607)
....|++.++|..+ ....+||+..+..|.
T Consensus 275 ~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 275 SGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp TTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred cCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 44458899999854 667789999998764
No 131
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.07 E-value=8.9e-12 Score=130.35 Aligned_cols=133 Identities=16% Similarity=0.100 Sum_probs=90.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cc--eEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AY--KFAYVRQEDLFFSQLTVRETLSLAAE 69 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~--~i~yv~Q~~~l~~~lTV~E~l~~~~~ 69 (607)
+||||||||||+++|+|.+++. +|+|.++|.+.... .+ .+.+++|+..+.|.+||+|++.++..
T Consensus 135 vG~nGaGKTTll~~Lag~l~~~-----~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~~~ 209 (328)
T 3e70_C 135 VGFNGSGKTTTIAKLANWLKNH-----GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHAKA 209 (328)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHhc-----CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHHHh
Confidence 5999999999999999999876 79999999886432 11 26699999999999999999987643
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 007344 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVM 149 (607)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~ 149 (607)
.... . .+++..|+.+.. ......|| .|++++..++.+++||.+| | .+++
T Consensus 210 ~~~d----------~--vliDtaG~~~~~-----~~l~~eL~-------~i~ral~~de~llvLDa~t-~------~~~~ 258 (328)
T 3e70_C 210 RGID----------V--VLIDTAGRSETN-----RNLMDEMK-------KIARVTKPNLVIFVGDALA-G------NAIV 258 (328)
T ss_dssp HTCS----------E--EEEEECCSCCTT-----TCHHHHHH-------HHHHHHCCSEEEEEEEGGG-T------THHH
T ss_pred ccch----------h--hHHhhccchhHH-----HHHHHHHH-------HHHHHhcCCCCEEEEecHH-H------HHHH
Confidence 1100 0 012223332211 11122333 3888888777777888444 3 4566
Q ss_pred HHHHHHH-hcCCeEEEEecCC
Q 007344 150 EALRQLA-QDGHTVICSIHQP 169 (607)
Q Consensus 150 ~~L~~la-~~g~tvi~~~H~p 169 (607)
+.++.+. ..+.|+|++||..
T Consensus 259 ~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 259 EQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHhcCCCEEEEeCcC
Confidence 6677776 4588999999964
No 132
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.06 E-value=3.4e-12 Score=132.09 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=73.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEE---CCeeCCCcc-----ceEEEEccCCCCC-----CCCCHHHHH--H
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV---NGKPSSNKA-----YKFAYVRQEDLFF-----SQLTVRETL--S 65 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~---~G~~~~~~~-----~~i~yv~Q~~~l~-----~~lTV~E~l--~ 65 (607)
+||||||||||+|+|+ ..++. +|+|.+ +|++.+... ..+|||+|++.+. +.+|+ |++ .
T Consensus 171 ~G~sG~GKSTLln~l~-~~~~~-----~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~l~~~ 243 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT-GEELR-----TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-REVRNY 243 (302)
T ss_dssp ECSTTSSHHHHHHHHH-SCCCC-----CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GGGGGG
T ss_pred ECCCCCCHHHHHHHHH-HhhCc-----ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HHHHHH
Confidence 5999999999999999 88776 799999 887765431 2479999998553 67899 887 4
Q ss_pred HH----HHccCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCcCCCCCHHHHHHHHHHHH
Q 007344 66 LA----AELQLPEILSVEERDEYVNSLLFKLGLVS-CADSNVGDAKVRGISGGEKKRLSLACE 123 (607)
Q Consensus 66 ~~----~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~d~~vg~~~~~~LSGGerqRvsIa~a 123 (607)
|. ..++.....+..+...+++++++.++|.+ .. +.+++.|||.++|++.||++
T Consensus 244 f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~-----~~~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 244 FREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERY-----KSYLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp CGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHH-----HHHHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHH-----HHHHHHHHHHHHHHHHHhcc
Confidence 43 10111111112233456889999999964 33 33567899999999999874
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.04 E-value=4.8e-12 Score=130.23 Aligned_cols=121 Identities=19% Similarity=0.206 Sum_probs=80.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHH----cc---CC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAE----LQ---LP 73 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~----~~---~~ 73 (607)
.|+||||||||.+.|++.+.+. |. ..+.+.+|+||+.+++. ++++++.+... +. .|
T Consensus 37 ~G~sGsGKSTla~~L~~~l~~~------g~----------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIYNHLMEK------YG----------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHH------HG----------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCST
T ss_pred ECCCCCCHHHHHHHHHHHhhhc------CC----------CCceEEEeccccccCCh-HHHHHHhccccccchhhhccCc
Confidence 4999999999999999987542 20 12235666999988875 88899887631 11 13
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC--cc-ccccccCCcCCCCCHHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHH
Q 007344 74 EILSVEERDEYVNSLLFKLGLV--SC-ADSNVGDAKVRGISGGEKKRLSLA--CELIASPSVIYADEPTTGLDAFQ 144 (607)
Q Consensus 74 ~~~~~~~~~~~v~~~l~~lgL~--~~-~d~~vg~~~~~~LSGGerqRvsIa--~aL~~~p~illLDEPtsGLD~~~ 144 (607)
..... ....+.++.+.-. .. .....-..+.+.+||||+||+.+| +++ +|+|+|+||||+++|+..
T Consensus 100 ~a~d~----~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 100 GTHDM----KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp TSBCH----HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred chhHH----HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 22332 2345556665331 00 000101224468999999999987 555 999999999999999864
No 134
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=1.5e-11 Score=132.35 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=96.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCC--H
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS--V 78 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~--~ 78 (607)
+||||||||||+|+|+|..- .|... ...........++|++|++.+++.+||.||+.++.......... .
T Consensus 48 vG~nGaGKSTLln~L~G~~l-------~g~~~-~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~ 119 (427)
T 2qag_B 48 VGETGLGKSTLMDTLFNTKF-------EGEPA-THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIV 119 (427)
T ss_dssp ECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHH
T ss_pred ECCCCCCHHHHHHHHhCccc-------cCCcC-CCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHH
Confidence 59999999999999999741 23211 11011111245999999998888899999987643210000000 0
Q ss_pred HHHHHHHHHHHHHc-CCCc----cccccc----c--CCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH
Q 007344 79 EERDEYVNSLLFKL-GLVS----CADSNV----G--DAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEK 147 (607)
Q Consensus 79 ~~~~~~v~~~l~~l-gL~~----~~d~~v----g--~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~ 147 (607)
+..++..++.++.. ++.. ..|+.+ . ....++++-.+ +.|+++|..+++++++|||+..|.+.....
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~ 196 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTK 196 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHH
Confidence 11234455566654 5431 122221 0 01124677666 789999999999999999999999999999
Q ss_pred HHHHHHH-HHhcCCeEEEEecC
Q 007344 148 VMEALRQ-LAQDGHTVICSIHQ 168 (607)
Q Consensus 148 i~~~L~~-la~~g~tvi~~~H~ 168 (607)
+.+.+++ +...|.+|+.++.+
T Consensus 197 l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 197 FKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHcCCcEEecCCC
Confidence 9999987 88889999888764
No 135
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.02 E-value=1.6e-12 Score=139.01 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=112.4
Q ss_pred CCCCCCcHHHHHHHHHcCcC----CC---CCCccceEEEECCeeCCC------ccce---EEEEccCCCCCCCCCHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLM----AS---PRLHLSGLLEVNGKPSSN------KAYK---FAYVRQEDLFFSQLTVRETL 64 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~----~~---~~~~~~G~I~~~G~~~~~------~~~~---i~yv~Q~~~l~~~lTV~E~l 64 (607)
+|+||||||||+|+|+|... .. ..-...|.|.++|..... ..+. ..++.+.+-+....+..|.+
T Consensus 26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L 105 (392)
T 1ni3_A 26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGL 105 (392)
T ss_dssp EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSS
T ss_pred ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHH
Confidence 59999999999999999321 10 001237999998843211 1122 34777888888887776665
Q ss_pred --HHHHHccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCC--CeEEEeCCCCCC
Q 007344 65 --SLAAELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASP--SVIYADEPTTGL 140 (607)
Q Consensus 65 --~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p--~illLDEPtsGL 140 (607)
.|...++. ++.++..++.. ++..+..+||+. +| +++++|||+.++
T Consensus 106 ~~~fl~~ir~------------~d~il~Vvd~~-------~d~~i~~v~~~~------------dP~~di~ildeel~~~ 154 (392)
T 1ni3_A 106 GNAFLSHVRA------------VDAIYQVVRAF-------DDAEIIHVEGDV------------DPIRDLSIIVDELLIK 154 (392)
T ss_dssp CHHHHHHHTT------------CSEEEEEEECC-------CTTCSSCCSSSS------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH------------HHHHHHHHhcc-------ccceeeeecccc------------CcchhhhhchhhhHHH
Confidence 44443331 11122222221 123344466653 89 999999999999
Q ss_pred CHHHHHHHHHHHHHH-HhcCCeEEEEecCChhHHHhhhccee-eecCC-eeeeeCCCCC
Q 007344 141 DAFQAEKVMEALRQL-AQDGHTVICSIHQPRGSVYFKFDDIV-LLTEG-KLVYAGPARD 196 (607)
Q Consensus 141 D~~~~~~i~~~L~~l-a~~g~tvi~~~H~p~~~i~~~~D~v~-lL~~G-~iv~~G~~~~ 196 (607)
|+....+.++.++++ ++.|.|++ +|.. ..+..+||++. +|.+| ++++.|+.++
T Consensus 155 D~~~~~k~~~~l~~~~~~~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 155 DAEFVEKHLEGLRKITSRGANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred HHHHHHHHHHHHHHHHHhcCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCCH
Confidence 999999999999998 77788864 8984 57889999999 99999 9999887765
No 136
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.00 E-value=9.8e-12 Score=133.94 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=89.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHH--HHccCCCCCCH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLA--AELQLPEILSV 78 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~--~~~~~~~~~~~ 78 (607)
+|+|||||||||++|+|..+ .+.+.+.......+|+|.+++. ..+++.|+.-+. +.. ......
T Consensus 163 VG~~gAGKSTLL~~Lsg~~~-----------~i~~~~ftTl~p~~G~V~~~~~--~~~~l~DtpGli~~a~~--~~~L~~ 227 (416)
T 1udx_A 163 VGYPNAGKSSLLAAMTRAHP-----------KIAPYPFTTLSPNLGVVEVSEE--ERFTLADIPGIIEGASE--GKGLGL 227 (416)
T ss_dssp ECCGGGCHHHHHHHHCSSCC-----------EECCCTTCSSCCEEEEEECSSS--CEEEEEECCCCCCCGGG--SCCSCH
T ss_pred ECCCCCcHHHHHHHHHcCCc-----------cccCcccceecceeeEEEecCc--ceEEEEeccccccchhh--hhhhhH
Confidence 69999999999999999742 2333333333334566655430 011111111000 000 001111
Q ss_pred HHHH--HHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH-
Q 007344 79 EERD--EYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL- 155 (607)
Q Consensus 79 ~~~~--~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l- 155 (607)
...+ ++++.++..+++. +..+..+|+|++||+.++++|+.+|.++++ +++|...+ ..++.+++.
T Consensus 228 ~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l 294 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADAL 294 (416)
T ss_dssp HHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHH
Confidence 1111 1122233333332 335567999999999999999999999999 99999877 555555554
Q ss_pred HhcCCeEEEEecCChhHHHhhhcceeee
Q 007344 156 AQDGHTVICSIHQPRGSVYFKFDDIVLL 183 (607)
Q Consensus 156 a~~g~tvi~~~H~p~~~i~~~~D~v~lL 183 (607)
.+.|.+++.+|..-...+.++++.+.-+
T Consensus 295 ~~~g~~vi~iSA~~g~gi~eL~~~i~~~ 322 (416)
T 1udx_A 295 AREGLAVLPVSALTGAGLPALKEALHAL 322 (416)
T ss_dssp HTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred HhcCCeEEEEECCCccCHHHHHHHHHHH
Confidence 4557777766654455677777766543
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.91 E-value=1.9e-09 Score=115.60 Aligned_cols=72 Identities=21% Similarity=0.220 Sum_probs=50.4
Q ss_pred HHHHHHHHHh--hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHHh-cCCeEEEEecCCh----------
Q 007344 116 KRLSLACELI--ASPSVIYADEPTTGLDAFQA------------EKVMEALRQLAQ-DGHTVICSIHQPR---------- 170 (607)
Q Consensus 116 qRvsIa~aL~--~~p~illLDEPtsGLD~~~~------------~~i~~~L~~la~-~g~tvi~~~H~p~---------- 170 (607)
+.+.-+.+++ .+|+++++||||+.+|+... .++++.|+++++ .|.|||+++|...
T Consensus 260 ~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g 339 (400)
T 3lda_A 260 RLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNP 339 (400)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC------------
T ss_pred HHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccC
Confidence 3343344443 46999999999999997543 678888999885 5999999999821
Q ss_pred --------hHHHhhhcceeeecCCe
Q 007344 171 --------GSVYFKFDDIVLLTEGK 187 (607)
Q Consensus 171 --------~~i~~~~D~v~lL~~G~ 187 (607)
..+.+.+|.++.|++|+
T Consensus 340 ~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 340 DPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --------CHHHHHCSEEEEEEECS
T ss_pred CCccCCchhHHHHhcceEEEEEecC
Confidence 23466789999997653
No 138
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.89 E-value=2.4e-10 Score=124.68 Aligned_cols=162 Identities=16% Similarity=0.107 Sum_probs=98.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----------cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----------AYKFAYVRQEDLFFSQLTVRETLSLAAE 69 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----------~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 69 (607)
+|+||||||||+++|+|++++. +|+|.++|.+.... +++++|++|+..+++.+||++++.++..
T Consensus 299 VGpNGSGKTTLl~~LAgll~~~-----~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLARQFEQQ-----GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKA 373 (503)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHHHH
T ss_pred ECCCcccHHHHHHHHHHHhhhc-----CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHHHh
Confidence 6999999999999999998875 79999987654321 2348999999888888999999988754
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh-hCC-CeEEEeCCCCCCCHHHHHH
Q 007344 70 LQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI-ASP-SVIYADEPTTGLDAFQAEK 147 (607)
Q Consensus 70 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~-~~p-~illLDEPtsGLD~~~~~~ 147 (607)
-. .. . -+++..|+.+.. ..+-.--+|++.+++++. ..| .++|..++|+|.|..
T Consensus 374 ~~----~D------v--VLIDTaGrl~~~---------~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al---- 428 (503)
T 2yhs_A 374 RN----ID------V--LIADTAGRLQNK---------SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV---- 428 (503)
T ss_dssp TT----CS------E--EEECCCCSCCCH---------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH----
T ss_pred cC----CC------E--EEEeCCCccchh---------hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHH----
Confidence 21 00 0 011222221110 011112247788888664 456 456555588886543
Q ss_pred HHHHHHHHH-hcCCeEEEEecCChhHHHhhhcceeeec--CCeeeeeCCCCC
Q 007344 148 VMEALRQLA-QDGHTVICSIHQPRGSVYFKFDDIVLLT--EGKLVYAGPARD 196 (607)
Q Consensus 148 i~~~L~~la-~~g~tvi~~~H~p~~~i~~~~D~v~lL~--~G~iv~~G~~~~ 196 (607)
+.++.+. .-|.|.+++||-. ......+.+-++. +..+.|.|.-..
T Consensus 429 --~~ak~f~~~~~itgvIlTKLD--~takgG~~lsi~~~~~~PI~fig~Ge~ 476 (503)
T 2yhs_A 429 --SQAKLFHEAVGLTGITLTKLD--GTAKGGVIFSVADQFGIPIRYIGVGER 476 (503)
T ss_dssp --HHHHHHHHHTCCSEEEEECGG--GCSCCTHHHHHHHHHCCCEEEEECSSS
T ss_pred --HHHHHHHhhcCCCEEEEEcCC--CcccccHHHHHHHHHCCCEEEEecCCC
Confidence 3344454 3478999999942 2222223233332 345666665444
No 139
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.86 E-value=1.6e-11 Score=129.04 Aligned_cols=141 Identities=20% Similarity=0.260 Sum_probs=88.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC---------ccceEEEEccCCCCCCCC------------C
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN---------KAYKFAYVRQEDLFFSQL------------T 59 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~---------~~~~i~yv~Q~~~l~~~l------------T 59 (607)
+||||||||||+|+|+|.+.+. +|+|.+.|.+... .+.+++|++|++.++... +
T Consensus 61 ~G~~GaGKSTLl~~l~g~~~~~-----~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~ 135 (337)
T 2qm8_A 61 TGVPGVGKSTTIDALGSLLTAA-----GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAK 135 (337)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhhhhC-----CCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchHHH
Confidence 5999999999999999998776 7999998876532 134589999998776532 1
Q ss_pred HHHHHHHHHH-----------------------------ccCCCCCCHHHHH---HHHHHHHHHcCCCccccccccCCcC
Q 007344 60 VRETLSLAAE-----------------------------LQLPEILSVEERD---EYVNSLLFKLGLVSCADSNVGDAKV 107 (607)
Q Consensus 60 V~E~l~~~~~-----------------------------~~~~~~~~~~~~~---~~v~~~l~~lgL~~~~d~~vg~~~~ 107 (607)
++|.+...-. +..+. ..++.+ +.+.+....+.+ +..|. ...
T Consensus 136 ~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~ivvl-NK~Dl----~~~ 208 (337)
T 2qm8_A 136 TRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADMIAV-NKADD----GDG 208 (337)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSEEEE-ECCST----TCC
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccEEEE-Echhc----cCc
Confidence 3333311100 00000 001100 011111111222 11110 112
Q ss_pred CCCCHHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 007344 108 RGISGGEKKRLSLACELIA------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 108 ~~LSGGerqRvsIa~aL~~------~p~illLDEPtsGLD~~~~~~i~~~L~~la~ 157 (607)
+.+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++..
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999887 688887 999999999999999988653
No 140
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.85 E-value=7.4e-12 Score=135.06 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=78.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc---------cceEEEE---------ccCCCC--CCC---
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK---------AYKFAYV---------RQEDLF--FSQ--- 57 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~---------~~~i~yv---------~Q~~~l--~~~--- 57 (607)
+|||||||||||++|+|.+++. +|+|.+.|.++... ..++++. .|++.. +..
T Consensus 173 ~GpnGSGKTTlL~allg~l~~~-----~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd 247 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQELNSS-----ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 247 (418)
T ss_dssp ECSTTSCHHHHHHHHHHHHCCT-----TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred ECCCCCCHHHHHHHHHhhcCCC-----CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCC
Confidence 5999999999999999998876 79999988776321 1234454 488654 344
Q ss_pred -CCHHHHHHHHHHccCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 007344 58 -LTVRETLSLAAELQLP-EILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYA 133 (607)
Q Consensus 58 -lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illL 133 (607)
.|+.+++.++..-++. .........+.+ +.|..+|+.+.. ....|||||+|| ||++|+.+|++..-
T Consensus 248 ~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 248 LETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccCC
Confidence 6899988876421100 000001111223 346778885431 356799999999 99999999998763
No 141
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.84 E-value=1.1e-11 Score=120.95 Aligned_cols=140 Identities=21% Similarity=0.143 Sum_probs=75.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||||||||+++|+|++++. | ..+|+|++++..+.. +..+++........+.......
T Consensus 28 ~G~sGsGKSTl~~~l~~~~~~~------g-------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLAAALSAQ------G-------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp ECCTTSCTHHHHHHHHHHHHHT------T-------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSGGGBCHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhhc------C-------------CceEEEecCCCcCCH-HHHHHhcccccCCCCchhhHHH
Confidence 5999999999999999998642 2 135666666554432 2222211000001111122222
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHH-HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA-CELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDG 159 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa-~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g 159 (607)
. .+.+..+...+..+....+ ...++|+||+||++++ +.++.++.++++|||.. .++.+.-
T Consensus 88 ~----~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~l~~~~ 148 (208)
T 3c8u_A 88 F----QRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RDLTAIW 148 (208)
T ss_dssp H----HHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GGGGGTC
T ss_pred H----HHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HHHHHhc
Confidence 2 2233332211111223333 2345799999999987 77788888877888741 1112222
Q ss_pred CeEEEEecCChhHHHhhhcc
Q 007344 160 HTVICSIHQPRGSVYFKFDD 179 (607)
Q Consensus 160 ~tvi~~~H~p~~~i~~~~D~ 179 (607)
-.++.+.+.....+.+...|
T Consensus 149 d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 149 DVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp SEEEEECCCHHHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHH
Confidence 36677767654445566665
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.83 E-value=2e-11 Score=135.07 Aligned_cols=158 Identities=15% Similarity=0.176 Sum_probs=89.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCee-CCC-ccceEEEEccCCC----------------------CCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSN-KAYKFAYVRQEDL----------------------FFS 56 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~-~~~-~~~~i~yv~Q~~~----------------------l~~ 56 (607)
+|||||||||||++|+|.++++ +|.|.++|.+ ... ....++++.|... ++.
T Consensus 266 ~GptGSGKTTlL~aL~~~i~~~-----~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMFIPPD-----AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp EESTTSSHHHHHHHHGGGSCTT-----CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred ECCCCCCHHHHHHHHHhhCCCC-----CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 5999999999999999999876 7999998865 221 1234666665433 223
Q ss_pred CCCHHHHHHHHHHccCCCC-CCHHHHHHHHHHHHHHcCCCc--cccccc--cC---CcCCCCCHHHHHHHHHHHHHhhCC
Q 007344 57 QLTVRETLSLAAELQLPEI-LSVEERDEYVNSLLFKLGLVS--CADSNV--GD---AKVRGISGGEKKRLSLACELIASP 128 (607)
Q Consensus 57 ~lTV~E~l~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~--~~d~~v--g~---~~~~~LSGGerqRvsIa~aL~~~p 128 (607)
.++..|++.+......... .+. -....+.++++++.... .....+ -+ .....+|||||||+.++.
T Consensus 341 Eir~~E~~~~l~a~~tGh~~~sT-~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~~R~~~ai------ 413 (511)
T 2oap_1 341 EVRGREAQTLFQAMSTGHASYST-LHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTRLRRTKEV------ 413 (511)
T ss_dssp CCCSTHHHHHHHHHHTTCEEEEE-EECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCEEEEEEEE------
T ss_pred CcCHHHHHHHHHhhcCCCCcccc-cccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCceEEEEEE------
Confidence 4455554433222211100 000 00001223333333211 000000 01 123467999999877652
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE--EecCChhHHHhhh
Q 007344 129 SVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVIC--SIHQPRGSVYFKF 177 (607)
Q Consensus 129 ~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~--~~H~p~~~i~~~~ 177 (607)
+ | |+|||+.....+++.+.++.++|+|+++ ++|+.. ++...+
T Consensus 414 ----~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 414 ----N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp ----E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred ----E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 1 7 9999998877777777777667888875 788753 444443
No 143
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.78 E-value=3.3e-10 Score=106.07 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=47.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSL 66 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 66 (607)
+||||||||||+|+|+|.+ +. +|+|.++|.++.+......+++|+..++ .+||.|++.+
T Consensus 39 ~G~nGaGKTTLlr~l~g~l-~~-----~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI-GH-----QGNVKSPTYTLVEEYNIAGKMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT-TC-----CSCCCCCTTTCEEEEEETTEEEEEEECT-TCSCTTHHHH
T ss_pred ECCCCCCHHHHHHHHHHhC-CC-----CCeEEECCEeeeeeccCCCcceeccccc-cCCcHHHHHH
Confidence 5999999999999999998 65 7999999977642211112799998888 8999999865
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.75 E-value=1.6e-10 Score=121.06 Aligned_cols=148 Identities=19% Similarity=0.200 Sum_probs=87.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-----ccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~ 75 (607)
.||||+|||||+++|+|.+... -...+|.+..++.++.. ....++|+.|.+.+.+ ++.|++...........
T Consensus 57 ~Gp~G~GKTTLa~~ia~~l~~~-~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i 133 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDI 133 (334)
T ss_dssp ESSTTSSHHHHHHHHHHHHTCC-EEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC
T ss_pred ECCCCCcHHHHHHHHHHHhCCC-EEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccce
Confidence 4999999999999999987321 00125555555543321 1346999999887765 78888865443221000
Q ss_pred -CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 007344 76 -LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQ 154 (607)
Q Consensus 76 -~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~ 154 (607)
.......+.++..++.++|.. +++ .+..||+|+|||+.++ .+||+.+..++.++|++
T Consensus 134 ~~~~~~~~~~i~~~l~~~~li~-at~-----~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~ 191 (334)
T 1in4_A 134 MIGKGPSAKSIRIDIQPFTLVG-ATT-----RSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKR 191 (334)
T ss_dssp ---------------CCCEEEE-EES-----CGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHH
T ss_pred eeccCcccccccccCCCeEEEE-ecC-----CcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHH
Confidence 011222334555555566633 322 3567999999998655 78899999999999999
Q ss_pred HHhc-CCeEEEEecCChhHHHhhhcc
Q 007344 155 LAQD-GHTVICSIHQPRGSVYFKFDD 179 (607)
Q Consensus 155 la~~-g~tvi~~~H~p~~~i~~~~D~ 179 (607)
.++. | +.|++ ..+..++++
T Consensus 192 ~~~~~~-----~~~~~-~~~~~ia~~ 211 (334)
T 1in4_A 192 AASLMD-----VEIED-AAAEMIAKR 211 (334)
T ss_dssp HHHHTT-----CCBCH-HHHHHHHHT
T ss_pred HHHHcC-----CCcCH-HHHHHHHHh
Confidence 8743 3 24653 344444443
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.72 E-value=6.8e-10 Score=114.67 Aligned_cols=83 Identities=20% Similarity=0.225 Sum_probs=55.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEE---CCeeCCCcc-----ceEEEEccCCC----------------CCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV---NGKPSSNKA-----YKFAYVRQEDL----------------FFS 56 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~---~G~~~~~~~-----~~i~yv~Q~~~----------------l~~ 56 (607)
+||||||||||||+|+|+.++. +|+|.+ +|++..... +.+|||+|.+. +++
T Consensus 175 ~G~sG~GKSTll~~l~g~~~~~-----~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~~~l~~ 249 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGLKLR-----VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEELKHYFK 249 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTCCCC------------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHHGGGST
T ss_pred ECCCCCcHHHHHHHhccccccc-----ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHHHHHHH
Confidence 6999999999999999999887 799999 887765421 24899999874 588
Q ss_pred CCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcCCC
Q 007344 57 QLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLV 95 (607)
Q Consensus 57 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 95 (607)
.+|+ ||+.|.. +.. ..+...++.++++.+||.
T Consensus 250 ~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~ 281 (301)
T 1u0l_A 250 EFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIA 281 (301)
T ss_dssp TSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSC
T ss_pred hccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCC
Confidence 9999 9888752 211 122345688999999994
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.66 E-value=1.2e-09 Score=112.92 Aligned_cols=105 Identities=20% Similarity=0.190 Sum_probs=56.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEE---CCeeCCCcc---ce-EEEEccCCCCCC----CCCHHHHHH--HH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEV---NGKPSSNKA---YK-FAYVRQEDLFFS----QLTVRETLS--LA 67 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~---~G~~~~~~~---~~-i~yv~Q~~~l~~----~lTV~E~l~--~~ 67 (607)
+||||+|||||+|+|+|..++. +|+|.+ +|+..+... +. .||++|.+.+.. .+|+ |++. |.
T Consensus 179 vG~sG~GKSTLln~L~g~~~~~-----~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~~~f~ 252 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPELGLR-----TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELGYTFP 252 (307)
T ss_dssp EESHHHHHHHHHHHHCC------------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHGGGSH
T ss_pred ECCCCCCHHHHHHHhccccccc-----ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHHHHHH
Confidence 5999999999999999998776 799988 777654322 12 699999987655 6899 8883 32
Q ss_pred H------HccCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHH
Q 007344 68 A------ELQLPEILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKK 116 (607)
Q Consensus 68 ~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerq 116 (607)
. .++........+....++++++.++|.+.+.. ....++.|++|
T Consensus 253 ~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-----~y~~lls~~~~ 302 (307)
T 1t9h_A 253 DIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-----HYVEFMTEIKD 302 (307)
T ss_dssp HHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-----HHHHHHHHHHT
T ss_pred HHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-----HHHHHHHHHhh
Confidence 1 12211111112234568899999999653322 23356667665
No 147
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.63 E-value=2.2e-12 Score=125.14 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=41.9
Q ss_pred HHH-HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeec
Q 007344 120 LAC-ELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLT 184 (607)
Q Consensus 120 Ia~-aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~ 184 (607)
+++ +++.+|++++|||+|+++|..+...|.+.|.+..++ +...|.+ ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 344 677788888889999999999999999998887653 2334522 4589887775
No 148
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.56 E-value=2.6e-08 Score=103.08 Aligned_cols=100 Identities=20% Similarity=0.263 Sum_probs=68.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+|||||||||+++.|++.+.+. .|+|.+.+.+.... + ..|
T Consensus 110 vG~~GsGKTTl~~~LA~~l~~~-----g~kV~lv~~D~~r~----~-------------a~e------------------ 149 (306)
T 1vma_A 110 VGVNGTGKTTSCGKLAKMFVDE-----GKSVVLAAADTFRA----A-------------AIE------------------ 149 (306)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEECTTCH----H-------------HHH------------------
T ss_pred EcCCCChHHHHHHHHHHHHHhc-----CCEEEEEccccccH----H-------------HHH------------------
Confidence 5999999999999999998764 56777665442110 0 011
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL---SLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv---sIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (607)
.+..+.+.+|+. . +...|||+.+++ +|++++..+|+++++|||.. ......+++.|+++.
T Consensus 150 ---qL~~~~~~~gl~-----~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~ 212 (306)
T 1vma_A 150 ---QLKIWGERVGAT-----V-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVH 212 (306)
T ss_dssp ---HHHHHHHHHTCE-----E-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCc-----E-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHH
Confidence 123344556662 1 235689999999 89999999999999999974 344555666666554
No 149
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.55 E-value=9.7e-08 Score=98.31 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=82.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+|||||||||+++.|++.+.+. +| +++.++.+|.. ..+..|.+...+.
T Consensus 111 vG~~GsGKTTl~~~LA~~l~~~-----~G-------------~~V~lv~~D~~---r~~a~eqL~~~~~----------- 158 (296)
T 2px0_A 111 FGSTGAGKTTTLAKLAAISMLE-----KH-------------KKIAFITTDTY---RIAAVEQLKTYAE----------- 158 (296)
T ss_dssp EESTTSSHHHHHHHHHHHHHHT-----TC-------------CCEEEEECCCS---STTHHHHHHHHHT-----------
T ss_pred ECCCCCCHHHHHHHHHHHHHHh-----cC-------------CEEEEEecCcc---cchHHHHHHHHHH-----------
Confidence 5999999999999999987643 34 24667776652 2355565544321
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---h
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA---Q 157 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la---~ 157 (607)
..|+... ...+. +.-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+-+. .
T Consensus 159 ----------~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~ 213 (296)
T 2px0_A 159 ----------LLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESS 213 (296)
T ss_dssp ----------TTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTT
T ss_pred ----------hcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCC
Confidence 1233110 01122 23344555 45999999999 99999876655544443332 2
Q ss_pred cCCeEEE-EecCChhHHHhhhcceeeecCCeeeee
Q 007344 158 DGHTVIC-SIHQPRGSVYFKFDDIVLLTEGKLVYA 191 (607)
Q Consensus 158 ~g~tvi~-~~H~p~~~i~~~~D~v~lL~~G~iv~~ 191 (607)
.+.++++ ++|.. .++...+|++..+..+.++..
T Consensus 214 ~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 214 IQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp EEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred CeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 2334444 47774 467777888877777777764
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.52 E-value=7.8e-11 Score=120.16 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=70.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHccCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE 74 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~ 74 (607)
+||||||||||+|+|+|... .|.|.++|.++... .+.+++++|+. ...+.+++.|++...+..+
T Consensus 50 ~Gp~GtGKTtLakala~~~~-------~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r--- 119 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVANESG-------LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR--- 119 (274)
T ss_dssp ESSTTSCHHHHHHHHHHHTT-------CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----
T ss_pred ECCCCCcHHHHHHHHHHHcC-------CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhccc---
Confidence 49999999999999999764 26889998776432 13467777764 4455566666654422111
Q ss_pred CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 007344 75 ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPT 137 (607)
Q Consensus 75 ~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPt 137 (607)
...+ .. .+. .+.+.....|||||+||+.|++++..+|++| ||++
T Consensus 120 --~~~~----~~------~~~-----~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 120 --SDRE----TG------ASV-----RVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp -------------------CT-----THHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred --CCCc----ch------HHH-----HHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 0000 00 011 1112345579999999999999999999985 7765
No 151
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.45 E-value=4.5e-09 Score=115.67 Aligned_cols=151 Identities=21% Similarity=0.149 Sum_probs=84.1
Q ss_pred CCCCCCcHHHHHHHHHc--CcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCC--CHHHHHHHHHH-ccCCCC
Q 007344 1 MGPSGSGKTTLLNVLAG--QLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQL--TVRETLSLAAE-LQLPEI 75 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG--~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~l--TV~E~l~~~~~-~~~~~~ 75 (607)
.|++||||||+|++|.. +...+ .|++.+.+.+.+... .+....+|++ +|.++...+.. ++
T Consensus 173 aG~TGSGKSt~L~~li~sLl~~~~-----p~~v~l~liDpK~~e------l~~~~~lPhl~~~Vvtd~~~a~~~L~---- 237 (512)
T 2ius_A 173 AGTTGSGASVGVNAMILSMLYKAQ-----PEDVRFIMIDPKMLE------LSVYEGIPHLLTEVVTDMKDAANALR---- 237 (512)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTTCC-----TTTEEEEEECCSSSG------GGGGTTCTTBSSSCBCSHHHHHHHHH----
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCC-----CceEEEEEECCchhh------hhhhccCCcccceeecCHHHHHHHHH----
Confidence 49999999999999875 22322 355555444433210 0000011111 12122222111 11
Q ss_pred CCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHH----------HHHHHHhhCCC-eEEEeCCCCCCCHHH
Q 007344 76 LSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRL----------SLACELIASPS-VIYADEPTTGLDAFQ 144 (607)
Q Consensus 76 ~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRv----------sIa~aL~~~p~-illLDEPtsGLD~~~ 144 (607)
...++.++|. ++++..|+.+..+-. ......+||||+||. .+++++...|. ++++||++.-+|..
T Consensus 238 ~~~~EmerR~-~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~- 313 (512)
T 2ius_A 238 WCVNEMERRY-KLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV- 313 (512)
T ss_dssp HHHHHHHHHH-HHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-
T ss_pred HHHHHHHHHH-HHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-
Confidence 1124455553 678888886543210 001124788887752 34555667887 78999999988843
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEecCCh
Q 007344 145 AEKVMEALRQLAQD----GHTVICSIHQPR 170 (607)
Q Consensus 145 ~~~i~~~L~~la~~----g~tvi~~~H~p~ 170 (607)
..++.+.+.++++. |.++|+++|.|+
T Consensus 314 ~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 314 GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 34566666666543 679999999997
No 152
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.44 E-value=1.4e-07 Score=99.39 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhcCCeEEEEecCChh-----
Q 007344 116 KRLSLACELIAS--PSVIYADEPTTGL----------DA---FQAEKVMEALRQL----AQDGHTVICSIHQPRG----- 171 (607)
Q Consensus 116 qRvsIa~aL~~~--p~illLDEPtsGL----------D~---~~~~~i~~~L~~l----a~~g~tvi~~~H~p~~----- 171 (607)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.+++| .+.|.|||++.|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 2233445555555 3568999999996431
Q ss_pred ----------HHHhhhcceeeecCCeeeeeCC
Q 007344 172 ----------SVYFKFDDIVLLTEGKLVYAGP 193 (607)
Q Consensus 172 ----------~i~~~~D~v~lL~~G~iv~~G~ 193 (607)
.+...+|.++.++.++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2567789999998887766654
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.44 E-value=8e-07 Score=87.49 Aligned_cols=60 Identities=22% Similarity=0.211 Sum_probs=45.5
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHH-hcCCeEEEEecCChhH-------HHhhhcceeeecC
Q 007344 126 ASPSVIYADEPTTGL--DAFQAEKVMEALRQLA-QDGHTVICSIHQPRGS-------VYFKFDDIVLLTE 185 (607)
Q Consensus 126 ~~p~illLDEPtsGL--D~~~~~~i~~~L~~la-~~g~tvi~~~H~p~~~-------i~~~~D~v~lL~~ 185 (607)
.+|+++++|+|++.+ |+....+++..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6655666667777665 6789999999986531 4567899999963
No 154
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.43 E-value=1.9e-08 Score=96.15 Aligned_cols=38 Identities=13% Similarity=0.175 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 007344 116 KRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQL 155 (607)
Q Consensus 116 qRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~l 155 (607)
+++.+|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4578899999999999999 9999999999999988653
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.38 E-value=5e-07 Score=92.92 Aligned_cols=106 Identities=21% Similarity=0.114 Sum_probs=71.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+|+||+||||++..|+|.+.+. .|+|.+.+.+..... ++ +.+
T Consensus 104 ~g~~G~GKTT~~~~la~~~~~~-----~~~v~l~~~d~~~~~----------------~~-~ql---------------- 145 (295)
T 1ls1_A 104 VGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAADTQRPA----------------AR-EQL---------------- 145 (295)
T ss_dssp ECCTTTTHHHHHHHHHHHHHHT-----TCCEEEEECCSSCHH----------------HH-HHH----------------
T ss_pred ECCCCCCHHHHHHHHHHHHHHc-----CCeEEEecCCcccHh----------------HH-HHH----------------
Confidence 4999999999999999998754 577777765432110 00 100
Q ss_pred HHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q 007344 81 RDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEP-TTGLDAFQAEKVMEALRQLA 156 (607)
Q Consensus 81 ~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEP-tsGLD~~~~~~i~~~L~~la 156 (607)
..+.+..|+..... + .+-+-.+.+|.+|+.+...+++++++||| ++|+|.....++.+..+.+.
T Consensus 146 -----~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 146 -----RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp -----HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred -----HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 01223345532110 0 12244566788999988899999999999 99999988888887776653
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.36 E-value=8.1e-07 Score=96.80 Aligned_cols=98 Identities=15% Similarity=0.122 Sum_probs=67.7
Q ss_pred HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCH--------HHHHHHHHHHH
Q 007344 84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELI--ASPSVIYADEPTTGLDA--------FQAEKVMEALR 153 (607)
Q Consensus 84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~--~~p~illLDEPtsGLD~--------~~~~~i~~~L~ 153 (607)
++.+.++.++..+.. +- ...++|.+|.+ +.++.++ .+|+++++|+++...++ ....++.+.|+
T Consensus 275 ~~~~a~~~l~~~~l~---i~--d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk 347 (454)
T 2r6a_A 275 KLTMAMGSLSNAGIY---ID--DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLK 347 (454)
T ss_dssp HHHHHHHHHHSSCEE---EE--CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEE---EE--CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHH
Confidence 455555555432221 11 13478999987 5667776 68999999999987742 34467888888
Q ss_pred HHHh-cCCeEEEEec---------C--Ch-------hHHHhhhcceeeecCCee
Q 007344 154 QLAQ-DGHTVICSIH---------Q--PR-------GSVYFKFDDIVLLTEGKL 188 (607)
Q Consensus 154 ~la~-~g~tvi~~~H---------~--p~-------~~i~~~~D~v~lL~~G~i 188 (607)
.+++ .|.+||+++| + |. ..+...+|.|++|..++.
T Consensus 348 ~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 348 ALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 8884 5899999999 2 32 146778999999976643
No 157
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.35 E-value=1.9e-08 Score=113.71 Aligned_cols=137 Identities=18% Similarity=0.142 Sum_probs=83.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEE 80 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~ 80 (607)
+||||+|||||+++|++..++. ..|.+.+++.+.......++++++...- .+.|.....+..... . ...
T Consensus 66 ~Gp~GtGKTtlar~ia~~l~~~----~~~~~~~~~~~~~~~~p~i~~~p~g~~~----~~~e~~~~~~~~~~~--~-r~~ 134 (604)
T 3k1j_A 66 IGEPGTGKSMLGQAMAELLPTE----TLEDILVFPNPEDENMPRIKTVPACQGR----RIVEKYREKAKSQES--V-KSS 134 (604)
T ss_dssp ECCTTSSHHHHHHHHHHTSCCS----SCEEEEEECCTTCTTSCEEEEEETTHHH----HHHHHHHHHHHHHTC--C----
T ss_pred EeCCCCCHHHHHHHHhccCCcc----cCCeEEEeCCcccccCCcEEEEecchHH----HHHHHHHHhhccchh--h-hhh
Confidence 4999999999999999998765 2488899888776666678999875310 111111111111000 0 000
Q ss_pred HHHH-------------------------HHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 007344 81 RDEY-------------------------VNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADE 135 (607)
Q Consensus 81 ~~~~-------------------------v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDE 135 (607)
.... ....-+.+|..+.. ....+++|+|++|++..+.....++.+||+||
T Consensus 135 ~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~-----~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDE 209 (604)
T 3k1j_A 135 NMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD-----PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDE 209 (604)
T ss_dssp --------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC-----CC----CCCCGGGGEECCHHHHTTTSEEEETT
T ss_pred cccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec-----hhhcCCccccccccccCceeeecCCCEEEEec
Confidence 0000 00001112211100 11235799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 007344 136 PTTGLDAFQAEKVMEALRQ 154 (607)
Q Consensus 136 PtsGLD~~~~~~i~~~L~~ 154 (607)
... |++.....+.+.|.+
T Consensus 210 i~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 210 IAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GGG-SCHHHHHHHHHHHHH
T ss_pred hhh-CCHHHHHHHHHHHHc
Confidence 988 899888888877764
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.19 E-value=1.4e-09 Score=110.71 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=67.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~ 74 (607)
+||||+|||||+++|++... .|.|.++|.++... ..++++++|+.. ..+.+++.|++......+...
T Consensus 79 ~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~ 151 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151 (278)
T ss_dssp ECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC----
T ss_pred ECCCcChHHHHHHHHHHHcC-------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccc
Confidence 59999999999999999763 57888888654221 234677777643 556677888875433221100
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCe
Q 007344 75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSV 130 (607)
Q Consensus 75 -~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~i 130 (607)
....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 152 ~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 152 VGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp ----CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred cCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 001122233333332 24899999999999999999876
No 159
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.18 E-value=8.4e-07 Score=93.94 Aligned_cols=147 Identities=24% Similarity=0.190 Sum_probs=84.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC------CCCccceEEEECCeeCCCccceEEEEccCCCCCCCCCHH---HHHHHHHHc-
Q 007344 1 MGPSGSGKTTLLNVLAGQLMAS------PRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVR---ETLSLAAEL- 70 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~------~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~l~~~lTV~---E~l~~~~~~- 70 (607)
+|+||||||||+|.|+|..... .....+|.|.++|.++.- ....|++.|.+. ..|. .++......
T Consensus 185 vG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l-~DT~G~i~~lp~----~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIML-VDTVGFIRGIPP----QIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEE-EECCCBCSSCCG----GGHHHHHHHHHGGGGSS
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEE-EeCCCchhcCCH----HHHHHHHHHHHHHHhCC
Confidence 5999999999999999986421 001246889998865411 112455544321 1121 111111000
Q ss_pred ---cC-CCCCCH---HHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHH----HHH-hhCCCeEEEeCCCC
Q 007344 71 ---QL-PEILSV---EERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLA----CEL-IASPSVIYADEPTT 138 (607)
Q Consensus 71 ---~~-~~~~~~---~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa----~aL-~~~p~illLDEPts 138 (607)
.. ...... .+..+.+.++++.+++.+..--.++| ++.-+|+|+++|+.++ +++ ..+|++ +|+|
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~S 334 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPIS 334 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECB
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEE
Confidence 00 001111 22334467788888875433122233 3556788899988887 444 333444 8999
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 007344 139 GLDAFQAEKVMEALRQLAQ 157 (607)
Q Consensus 139 GLD~~~~~~i~~~L~~la~ 157 (607)
++|.....++.+.|.++..
T Consensus 335 A~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhc
Confidence 9999999999999988653
No 160
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.15 E-value=2.7e-06 Score=92.97 Aligned_cols=59 Identities=19% Similarity=0.343 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCeEEEEecCCh
Q 007344 112 GGEKKRLSLACELIASPSVIYADEP----------TTGLDAFQAEKVMEALRQLA----QDGHTVICSIHQPR 170 (607)
Q Consensus 112 GGerqRvsIa~aL~~~p~illLDEP----------tsGLD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~ 170 (607)
|++++|..++.+....|.|||+||+ +.|.|......+.++|..+- ..+..||.++|+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999899999999999 34677776677777777763 35678999999874
No 161
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.15 E-value=2.2e-07 Score=96.04 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=51.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC--CCCCCccceEEEE---CCeeCCCc-cceEEEEccCCCCCCCCCHHHHHHHHHHcc
Q 007344 1 MGPSGSGKTTLLNVLAGQLM--ASPRLHLSGLLEV---NGKPSSNK-AYKFAYVRQEDLFFSQLTVRETLSLAAELQ 71 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~--~~~~~~~~G~I~~---~G~~~~~~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~ 71 (607)
+||||||||||+++|+|++. ++ +|+|.+ +|...... ...++++ |+..+++.+|+.+++.+...++
T Consensus 86 ~G~~GsGKSTl~~~L~~~l~~~~~-----~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQALLSRWPE-----HRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp EECTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHhhCCC-----CCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 59999999999999999877 65 799999 88764322 2347888 8777788899999998876654
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.15 E-value=1.9e-09 Score=107.96 Aligned_cols=105 Identities=19% Similarity=0.247 Sum_probs=66.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCC-CCCCCCCHHHHHHHHHHccCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQED-LFFSQLTVRETLSLAAELQLPE 74 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~-~l~~~lTV~E~l~~~~~~~~~~ 74 (607)
+||||+|||||+++|++... .|.+.++|.++... ..++++++|+. ...+.+++.|++......+...
T Consensus 55 ~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~ 127 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 127 (254)
T ss_dssp ECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC-----
T ss_pred ECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcc
Confidence 49999999999999999763 57888887654211 23466777764 3456677777774433221100
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCe
Q 007344 75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSV 130 (607)
Q Consensus 75 -~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~i 130 (607)
....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 128 ~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 128 VGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp ----CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred ccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 001122233333333 24789999999999999999976
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.11 E-value=1.1e-06 Score=84.09 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=32.8
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 007344 118 LSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA 156 (607)
Q Consensus 118 vsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la 156 (607)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887754
No 164
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.10 E-value=4.3e-06 Score=88.08 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=48.7
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEe--cCCh
Q 007344 107 VRGISGGEKKRLSLACELIASPSVIYAD-EPTTGLDAFQAEKVMEALRQLAQDGHTVICSI--HQPR 170 (607)
Q Consensus 107 ~~~LSGGerqRvsIa~aL~~~p~illLD-EPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~--H~p~ 170 (607)
...+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... +..+|++. ||..
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 4568999998876 55555777889999 99999999998888887777654 67777777 7743
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.06 E-value=5.6e-07 Score=89.01 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=31.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-------------ccceEEEEccC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-------------KAYKFAYVRQE 51 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-------------~~~~i~yv~Q~ 51 (607)
+|||||||||||++|+|.+.++ +|+|.++|.++.. ....++||+|+
T Consensus 33 ~GpnGsGKSTll~~i~g~~~~~-----~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTALIPD-----LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HSCCSHHHHHHHHHHHHHHSCC-----TTTC------------------CGGGBCSSEEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcccccC-----CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 5999999999999999999887 7899999876521 02348888884
No 166
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.97 E-value=1e-05 Score=93.77 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=59.5
Q ss_pred cCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCeEEEE-ecCChhHHHhhhcceee
Q 007344 106 KVRGISGGEKKRLSLACELIASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICS-IHQPRGSVYFKFDDIVL 182 (607)
Q Consensus 106 ~~~~LSGGerqRvsIa~aL~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~-~H~p~~~i~~~~D~v~l 182 (607)
.+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+.....++|++| ||++ ..+...+++..+
T Consensus 187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~~~v 264 (773)
T 2xau_A 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFNDAPL 264 (773)
T ss_dssp SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTSCCE
T ss_pred CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcCCCc
Confidence 455689999999999999999999999999996 999887777777776655556677775 8875 456666765433
No 167
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.97 E-value=6.7e-06 Score=89.17 Aligned_cols=97 Identities=11% Similarity=0.133 Sum_probs=66.0
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceee-ecCCeeeeeCCCCCc-hhhHh
Q 007344 126 ASPSVIYADEPTTGLDA-FQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVL-LTEGKLVYAGPARDE-PLAYF 202 (607)
Q Consensus 126 ~~p~illLDEPtsGLD~-~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~l-L~~G~iv~~G~~~~~-~~~~f 202 (607)
.+|++|++||+..-.+. .+...+...+..+.+.|+.+|+++|.+..++..+.+++.- +..|.++..++++.. ....+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887664 6778899999998888999999999876544334444443 567888888877653 22222
Q ss_pred ----hhcCCCCCCCCCHHHHHHHhhc
Q 007344 203 ----SRFGYTCPDHVNPAEFLADLIS 224 (607)
Q Consensus 203 ----~~~g~~~p~~~~~ad~~~~~~~ 224 (607)
+..|...+ ....+++.....
T Consensus 273 ~~~~~~~~~~i~--~e~l~~la~~~~ 296 (440)
T 2z4s_A 273 RKMLEIEHGELP--EEVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHTCCCC--TTHHHHHHHHCC
T ss_pred HHHHHHcCCCCC--HHHHHHHHHhcC
Confidence 33455443 345677665543
No 168
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.90 E-value=4e-07 Score=87.37 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=35.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCC-----ccceEEEEccCCCCCCCCCHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSN-----KAYKFAYVRQEDLFFSQLTVRET 63 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~-----~~~~i~yv~Q~~~l~~~lTV~E~ 63 (607)
+||||||||||+++|+|+.+ .+.+++..... ....++|++|++..++.+++.++
T Consensus 13 ~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGA 71 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTC
T ss_pred ECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCc
Confidence 59999999999999999853 23444433322 12347899998765555444433
No 169
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.84 E-value=3.7e-06 Score=88.55 Aligned_cols=21 Identities=33% Similarity=0.335 Sum_probs=18.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
.||||||||||+..+++...+
T Consensus 67 ~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 67 FGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp EESTTSSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHh
Confidence 499999999999999987654
No 170
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.78 E-value=3.1e-06 Score=92.41 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSS 39 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~ 39 (607)
+|||||||||||++|+|+++++ +|+|.++|+++.
T Consensus 35 iG~nGsGKSTLl~~l~Gl~~p~-----~G~I~~~g~~~~ 68 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVTALIPD-----LTLLNFRNTTEA 68 (483)
T ss_dssp ECCTTSSHHHHHHHHHHHHCCC-----TTTCCCCCTTSC
T ss_pred ECCCCCcHHHHHHHHhcCCCCC-----CCEEEECCEEcc
Confidence 5999999999999999999887 799999998764
No 171
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.75 E-value=2.1e-09 Score=106.23 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=31.0
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----cCCeEEEEecCChhHHHhhhcceeeecCCeeee
Q 007344 125 IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ-----DGHTVICSIHQPRGSVYFKFDDIVLLTEGKLVY 190 (607)
Q Consensus 125 ~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~-----~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~iv~ 190 (607)
+..|+...+||++.+.|..+...+.+.+++... ....++++.|+ ..++....++++-..+++..+
T Consensus 146 v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~-~e~~~~~l~~~i~~~~~~~~~ 215 (231)
T 3lnc_A 146 IMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNED-IEETADRISNILRAEQMKTCR 215 (231)
T ss_dssp EECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSS-HHHHHHHHHHHHHHHHTBGGG
T ss_pred EECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcC-HHHHHHHHHHHHHHHhhcccc
Confidence 456677778899999998888887777665432 23467777776 445666666666555555443
No 172
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.70 E-value=5.9e-05 Score=79.11 Aligned_cols=44 Identities=5% Similarity=-0.109 Sum_probs=35.2
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCeEEEEecCCh
Q 007344 126 ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ---DGHTVICSIHQPR 170 (607)
Q Consensus 126 ~~p~illLDEPtsGLD~~~~~~i~~~L~~la~---~g~tvi~~~H~p~ 170 (607)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888887776665 5778999999873
No 173
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.58 E-value=9e-08 Score=101.73 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=67.1
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCccceEEEEccCCC-CCCCCCHHHHHHHHHHccCCCCCCHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPEILSVE 79 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~ 79 (607)
+||||||||||+++|+|.. +|.+..-+.+.......+|+++|... ++++.+....+ ..+.... ...
T Consensus 175 ~G~~GsGKSTl~~~l~~~~--------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~----~r~l~~~-~~~ 241 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLELC--------GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGE----SRDLPSG-QGI 241 (377)
T ss_dssp ECSTTSSHHHHHHHHHHHH--------CCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTT----TTTCCCC-SHH
T ss_pred ECCCCCCHHHHHHHHHhhc--------CCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHH----Hhhcccc-Ccc
Confidence 4999999999999999853 46665422111111223677777754 34444332211 0000000 110
Q ss_pred HHHHHHHHHHHH---cCCCc-cc---c----ccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEE-EeCCCC
Q 007344 80 ERDEYVNSLLFK---LGLVS-CA---D----SNVGDAKVRGISGGEKKRLSLACELIASPSVIY-ADEPTT 138 (607)
Q Consensus 80 ~~~~~v~~~l~~---lgL~~-~~---d----~~vg~~~~~~LSGGerqRvsIa~aL~~~p~ill-LDEPts 138 (607)
.....+.+.++. +.+.. .. + ...-+.....+++|+++|+..+++++.+|++++ ||+|+.
T Consensus 242 ~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 242 NNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 011223344431 11110 00 0 001122456689999999998888888999887 999997
No 174
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.57 E-value=1.8e-06 Score=83.06 Aligned_cols=43 Identities=28% Similarity=0.331 Sum_probs=31.4
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc----cceEEEEccCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK----AYKFAYVRQED 52 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~----~~~i~yv~Q~~ 52 (607)
+||||||||||+++|+|.+ |.+.++|.++... ....|+++|+.
T Consensus 35 ~G~~GsGKSTl~~~L~~~~---------g~~~i~~d~~~~~~~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVADET---------GLEFAEADAFHSPENIATMQRGIPLTDE 81 (200)
T ss_dssp ECCTTSCHHHHHHHHHHHH---------CCEEEEGGGGSCHHHHHHHHTTCCCCHH
T ss_pred ECCCCCCHHHHHHHHHHhh---------CCeEEcccccccHHHHHHHhcCCCCCCc
Confidence 5999999999999999963 7788888765432 12356666653
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.52 E-value=7.8e-05 Score=77.86 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEe
Q 007344 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD--GHTVICSI 166 (607)
Q Consensus 109 ~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~--g~tvi~~~ 166 (607)
.||++|.+|+..|...+.++++++.|+|... ..++...++++.++ |..+|++=
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEe
Confidence 5999999999999999999999999998654 34677777777644 56666664
No 176
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.47 E-value=5.6e-06 Score=79.66 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhH-HHhhhcceeeec
Q 007344 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGS-VYFKFDDIVLLT 184 (607)
Q Consensus 111 SGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~-i~~~~D~v~lL~ 184 (607)
+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.++.. .+.++|+.+|..... +...||.+++++
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 678889999998888887654333 2345555555544444322 355888888864322 245567777663
No 177
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.47 E-value=0.00039 Score=70.50 Aligned_cols=60 Identities=22% Similarity=0.309 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----cCCeEEEEecCCh
Q 007344 111 SGGEKKRLSLACELIASPSVIYADEPTTGLDAF----------QAEKVMEALRQLAQ----DGHTVICSIHQPR 170 (607)
Q Consensus 111 SGGerqRvsIa~aL~~~p~illLDEPtsGLD~~----------~~~~i~~~L~~la~----~g~tvi~~~H~p~ 170 (607)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..+|.++++|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 356677777777778899999999998765532 22233444433321 2346777888753
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.43 E-value=2.2e-05 Score=74.47 Aligned_cols=21 Identities=48% Similarity=0.718 Sum_probs=19.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
+||||||||||+++|+|+.++
T Consensus 7 ~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp ESSSSSSHHHHHHHHHHHCGG
T ss_pred ECCCCCCHHHHHHHHHhhCCc
Confidence 599999999999999998864
No 179
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.37 E-value=0.00022 Score=73.24 Aligned_cols=64 Identities=16% Similarity=0.124 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhc-CC--eEEEEecCChhHHHhhhccee
Q 007344 110 ISGGEKKRLSLACELI--ASPSVIYADEPTTGLDAFQ-AEKVMEALRQLAQD-GH--TVICSIHQPRGSVYFKFDDIV 181 (607)
Q Consensus 110 LSGGerqRvsIa~aL~--~~p~illLDEPtsGLD~~~-~~~i~~~L~~la~~-g~--tvi~~~H~p~~~i~~~~D~v~ 181 (607)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.++.|+ ...+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~-g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET-GLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT-TTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC-CCCHHHHHHHHH
Confidence 899986 4566666 67999998 7899876 66778888888753 43 56666676 345677777665
No 180
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.32 E-value=1.2e-06 Score=96.42 Aligned_cols=110 Identities=19% Similarity=0.249 Sum_probs=67.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc-----cceEEEEccCCC-CCCCCCHHHHHHHHHHccCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK-----AYKFAYVRQEDL-FFSQLTVRETLSLAAELQLPE 74 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~-----~~~i~yv~Q~~~-l~~~lTV~E~l~~~~~~~~~~ 74 (607)
+||||+|||||+++|++... .+.+.++|.++... ..++..++|... ..+.+.+.|++......+...
T Consensus 70 ~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~ 142 (499)
T 2dhr_A 70 VGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142 (499)
T ss_dssp ECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSS
T ss_pred ECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccC
Confidence 49999999999999999753 46788888765332 123556666542 344455555553221111100
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 007344 75 -ILSVEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYADEPT 137 (607)
Q Consensus 75 -~~~~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illLDEPt 137 (607)
....++..+.+.+++. .|||||+|+..|+++...+|++ |||+.
T Consensus 143 ~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 143 VGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp TTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred cCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 0112333444455443 3678888888888888888987 78775
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.20 E-value=0.0023 Score=67.06 Aligned_cols=57 Identities=14% Similarity=0.111 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-eEEEEec
Q 007344 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGH-TVICSIH 167 (607)
Q Consensus 110 LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~-tvi~~~H 167 (607)
-++.++++..+++..+.+|+++++.-..+..|..+ ...++.++.+...|. ++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999877774334445443 455667777766664 6666654
No 182
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.12 E-value=3e-05 Score=77.53 Aligned_cols=47 Identities=30% Similarity=0.293 Sum_probs=36.6
Q ss_pred CCCCCCcHHHHHHHHH---cCcCCCCCCccceEEE--------ECCeeCCCc------cceEEEEccCC
Q 007344 1 MGPSGSGKTTLLNVLA---GQLMASPRLHLSGLLE--------VNGKPSSNK------AYKFAYVRQED 52 (607)
Q Consensus 1 lGpsGsGKSTLL~~La---G~~~~~~~~~~~G~I~--------~~G~~~~~~------~~~i~yv~Q~~ 52 (607)
+|||||||||++++|+ |...++ +|.+. .+|.++... ...+++++|.+
T Consensus 33 ~G~~GsGKSTl~k~La~~Lg~~~~d-----~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 33 DGPSGAGKGTLCKALAESLNWRLLD-----SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp ECCTTSSHHHHHHHHHHHTTCEEEE-----HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcCC-----CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 5999999999999999 987766 78888 888776432 23478888753
No 183
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.08 E-value=7.6e-05 Score=77.87 Aligned_cols=20 Identities=30% Similarity=0.605 Sum_probs=17.9
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
.||+|+|||||++.+++...
T Consensus 51 ~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp EECTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999998764
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.04 E-value=0.00012 Score=69.06 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
+||||||||||+++|++..++
T Consensus 11 ~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp ECCTTSSHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHHhhCCc
Confidence 599999999999999998753
No 185
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.97 E-value=0.00017 Score=68.80 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMAS 22 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~ 22 (607)
+||||||||||+++|++...++
T Consensus 12 ~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ECSTTSCHHHHHHHHHHCTTCC
T ss_pred ECCCCCCHHHHHHHHHHhhCCC
Confidence 5999999999999999998543
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.91 E-value=0.0015 Score=67.15 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=36.1
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 007344 125 IASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (607)
Q Consensus 125 ~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~ 171 (607)
..++++|++||+-. .-+......+...+..+.+.|..+|++++.+..
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~ 143 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 143 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 35799999999865 334477888899998888878888888776543
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.91 E-value=0.0015 Score=70.41 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=33.0
Q ss_pred HHHHHHhhCCCeEEEeCCC-CC--CCHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 007344 119 SLACELIASPSVIYADEPT-TG--LDAFQAEKVMEALRQLAQDGHTVICSIHQ 168 (607)
Q Consensus 119 sIa~aL~~~p~illLDEPt-sG--LD~~~~~~i~~~L~~la~~g~tvi~~~H~ 168 (607)
+++.+...+++++++|+|- .+ .|+....++.++++.+......+++..|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 4444445689999999997 35 78877777777666554444455555554
No 188
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.89 E-value=0.001 Score=63.22 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=29.5
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHH-HHHHHHHhcCCeEEEEecCChhHHHh
Q 007344 125 IASPSVIYADEPTT-GLDAFQAEKVM-EALRQLAQDGHTVICSIHQPRGSVYF 175 (607)
Q Consensus 125 ~~~p~illLDEPts-GLD~~~~~~i~-~~L~~la~~g~tvi~~~H~p~~~i~~ 175 (607)
+.++++|++||+-. .++......++ .++......+..+|++++.+..++..
T Consensus 113 ~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 113 IKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred hcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 34678999999932 23333333344 45555545667777777766555544
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.81 E-value=0.0041 Score=64.89 Aligned_cols=53 Identities=8% Similarity=0.091 Sum_probs=36.4
Q ss_pred HHHHHHHHHh----hCCCeEEEeCCCCCCCHH------------HHHHHHHHHHHHHh-cCCeEEEEecC
Q 007344 116 KRLSLACELI----ASPSVIYADEPTTGLDAF------------QAEKVMEALRQLAQ-DGHTVICSIHQ 168 (607)
Q Consensus 116 qRvsIa~aL~----~~p~illLDEPtsGLD~~------------~~~~i~~~L~~la~-~g~tvi~~~H~ 168 (607)
+.+..++.++ .+++++++|+.++-.+.. ...++++.|+++++ .|.+||++.|-
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 4455566666 568999999999865432 13456666777764 57888888775
No 190
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.79 E-value=0.00013 Score=69.86 Aligned_cols=33 Identities=39% Similarity=0.508 Sum_probs=26.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEE--EECCeeCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLL--EVNGKPSS 39 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I--~~~G~~~~ 39 (607)
+||||||||||+++|++++. . .|.+ .++|..+.
T Consensus 31 ~G~sGsGKSTl~~~La~~l~-~-----~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 31 TGLSGSGKSTLACALNQMLY-Q-----KGKLCYILDGDNVR 65 (200)
T ss_dssp ECSTTSSHHHHHHHHHHHHH-H-----TTCCEEEEEHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHH-h-----cCceEEEecCchhh
Confidence 59999999999999999875 2 4665 77776553
No 191
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.77 E-value=0.0003 Score=65.93 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMAS 22 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~ 22 (607)
+||||||||||+++|.+.+.+.
T Consensus 32 ~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 32 VGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp EECTTSSHHHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHHHHHcCC
Confidence 5999999999999999977653
No 192
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.66 E-value=0.00032 Score=68.85 Aligned_cols=29 Identities=34% Similarity=0.373 Sum_probs=24.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS 38 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~ 38 (607)
.|+||||||||+++|+|. .|+|.+++++.
T Consensus 26 ~G~~GsGKSTl~~~L~~~---------~g~v~~~~~~~ 54 (230)
T 2vp4_A 26 EGNIGSGKTTYLNHFEKY---------KNDICLLTEPV 54 (230)
T ss_dssp ECSTTSCHHHHHHTTGGG---------TTTEEEECCTH
T ss_pred ECCCCCCHHHHHHHHHhc---------cCCeEEEecCH
Confidence 499999999999999996 36788887664
No 193
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.61 E-value=0.0004 Score=72.03 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=39.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeCCCc--------------cceEEEE-ccCCCCCCCCCHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNK--------------AYKFAYV-RQEDLFFSQLTVRETLS 65 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~~~~--------------~~~i~yv-~Q~~~l~~~lTV~E~l~ 65 (607)
+|+||+||||++..|++.+.+. .|+|.+.+.+.... ...+.++ .|.....+..++.+++.
T Consensus 111 vG~~G~GKTT~~~~LA~~l~~~-----g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 111 VGVNGTGKTTSLAKMANYYAEL-----GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDAIK 185 (320)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHT-----TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHHHH
Confidence 4999999999999999998765 57888877654321 2247788 66544333333444443
No 194
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.59 E-value=0.00058 Score=77.75 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=30.7
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344 125 IASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (607)
Q Consensus 125 ~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~ 170 (607)
..+.-++++| |+.|+++.+. +.++.+.+.|.++|+++|...
T Consensus 97 ~ad~~ilVvD-~~~g~~~qt~----~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 97 AADAALVAVS-AEAGVQVGTE----RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HCSEEEEEEE-TTTCSCHHHH----HHHHHHHHTTCCEEEEEECGG
T ss_pred hcCcEEEEEc-CCcccchhHH----HHHHHHHHccCCEEEEecCCc
Confidence 5677899999 9999998776 333444456888899998753
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.58 E-value=0.0018 Score=66.19 Aligned_cols=19 Identities=42% Similarity=0.730 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||+++|++..
T Consensus 55 ~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 55 YGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp ECSSSSSHHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHHHHh
Confidence 4999999999999999864
No 196
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.57 E-value=0.0061 Score=62.92 Aligned_cols=54 Identities=24% Similarity=0.180 Sum_probs=37.8
Q ss_pred HHHHHHHHHHh---hCCCeEEEeCCCCCCCH--------H----HHHHHHHHHHHHH-hcCCeEEEEecC
Q 007344 115 KKRLSLACELI---ASPSVIYADEPTTGLDA--------F----QAEKVMEALRQLA-QDGHTVICSIHQ 168 (607)
Q Consensus 115 rqRvsIa~aL~---~~p~illLDEPtsGLD~--------~----~~~~i~~~L~~la-~~g~tvi~~~H~ 168 (607)
.+.+..++.++ .+|+++++|+.++-.+. . ...++++.|++++ +.|.+||++.|-
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 35677777787 57999999999875532 1 1245666666766 458888888774
No 197
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.55 E-value=0.0036 Score=64.43 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCe--EEEEec
Q 007344 110 ISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD-GHT--VICSIH 167 (607)
Q Consensus 110 LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~-g~t--vi~~~H 167 (607)
||++|++|+..|...+.++++++.|+|... ..++.+.++++.++ |.. +|++=|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 899999999999999999999999998643 45567777777643 555 666644
No 198
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.52 E-value=0.00066 Score=62.79 Aligned_cols=19 Identities=53% Similarity=0.793 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||||||||||+++|++.+
T Consensus 10 ~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp ECCTTSCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999999975
No 199
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.48 E-value=0.00087 Score=64.59 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=19.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
+||||||||||++.|++..++
T Consensus 14 ~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp ECCTTSCHHHHHHHHHHSTTC
T ss_pred ECcCCCCHHHHHHHHHhhCCC
Confidence 599999999999999998765
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.44 E-value=0.00034 Score=67.08 Aligned_cols=31 Identities=39% Similarity=0.231 Sum_probs=24.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK 36 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~ 36 (607)
+|+||||||||+++|++.+++. .|.|.+.+.
T Consensus 28 ~G~~GsGKstl~~~l~~~~~~~-----~~~v~~~~~ 58 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQTLREQ-----GISVCVFHM 58 (201)
T ss_dssp EECTTSSHHHHHHHHHHHHHHT-----TCCEEEEEG
T ss_pred ECCCCCCHHHHHHHHHHHHhhc-----CCeEEEecc
Confidence 4999999999999999987654 466665543
No 201
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.40 E-value=0.00076 Score=64.93 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=18.3
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+||||||||||++.|++..+
T Consensus 25 ~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 25 IGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ECCTTSSHHHHHHHHHHHCT
T ss_pred ECcCCCCHHHHHHHHHhhCC
Confidence 59999999999999999765
No 202
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.38 E-value=0.00063 Score=63.21 Aligned_cols=29 Identities=38% Similarity=0.445 Sum_probs=23.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS 38 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~ 38 (607)
+|+|||||||++++|++.+ |.+.+++..+
T Consensus 14 ~G~~GsGKSTl~~~l~~~~---------g~~~i~~d~~ 42 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAHQL---------HAAFLDGDFL 42 (175)
T ss_dssp ECSTTSCHHHHHHHHHHHH---------TCEEEEGGGG
T ss_pred EcCCCCCHHHHHHHHHHhh---------CcEEEeCccc
Confidence 5999999999999999863 5566766443
No 203
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.34 E-value=0.0022 Score=61.99 Aligned_cols=45 Identities=13% Similarity=0.193 Sum_probs=31.6
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCe-EEEEecCCh
Q 007344 126 ASPSVIYADEPTTGL-DAFQAEKVMEALRQLAQDGHT-VICSIHQPR 170 (607)
Q Consensus 126 ~~p~illLDEPtsGL-D~~~~~~i~~~L~~la~~g~t-vi~~~H~p~ 170 (607)
.+|.++++||.-.-- +......+.+.+....+.+.. +|++++.+.
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233367788888888776765 777777543
No 204
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.29 E-value=0.021 Score=55.76 Aligned_cols=43 Identities=7% Similarity=0.143 Sum_probs=28.3
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCeEEEEecC
Q 007344 126 ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQ--DGHTVICSIHQ 168 (607)
Q Consensus 126 ~~p~illLDEPtsGLD~~~~~~i~~~L~~la~--~g~tvi~~~H~ 168 (607)
.+|+++++..+.+.++......+..+++.+.. ...++|+.+|-
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 36899999999888888665555444443322 12477888873
No 205
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.19 E-value=0.0033 Score=67.78 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=27.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCC-------CCCCccceEEEECCeeC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA-------SPRLHLSGLLEVNGKPS 38 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~-------~~~~~~~G~I~~~G~~~ 38 (607)
+|+||+|||||+|.|+|.... ...-...|.+.++|.++
T Consensus 186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 699999999999999997531 00112468899998754
No 206
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.17 E-value=0.002 Score=61.57 Aligned_cols=19 Identities=47% Similarity=0.555 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|+||||||||++.|++.+
T Consensus 27 ~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EESTTSSHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999999974
No 207
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.16 E-value=0.01 Score=59.45 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=30.1
Q ss_pred HhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHH---h-cCCeEEEEecCC
Q 007344 124 LIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLA---Q-DGHTVICSIHQP 169 (607)
Q Consensus 124 L~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la---~-~g~tvi~~~H~p 169 (607)
.-.+|.+|++||.-. +-+......+.+++..+. . .+..+|++++.|
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 345688999999733 125566677777777763 1 244677777765
No 208
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.15 E-value=0.00095 Score=65.50 Aligned_cols=67 Identities=16% Similarity=-0.000 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcc
Q 007344 111 SGGEKKRLSLACELIASPSVIYADEPTT-GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDD 179 (607)
Q Consensus 111 SGGerqRvsIa~aL~~~p~illLDEPts-GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~ 179 (607)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.+...+-+++++|..-+.....+.|++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCC
Confidence 456655543 33578899999999976 78877665555555444333346666665555555455443
No 209
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.14 E-value=0.0014 Score=67.90 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=18.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
+||||||||||+++|++++..
T Consensus 98 ~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp ECCTTSSHHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHhcc
Confidence 499999999999999998763
No 210
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.11 E-value=0.00089 Score=74.43 Aligned_cols=33 Identities=39% Similarity=0.613 Sum_probs=26.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccce-EEE-ECCeeC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG-LLE-VNGKPS 38 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G-~I~-~~G~~~ 38 (607)
+|+||||||||+++|+|++.+. +| ++. ++|...
T Consensus 375 iG~sGSGKSTLar~La~~L~~~-----~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 375 TGLSGAGKSTLARALAARLMEM-----GGRCVTLLDGDIV 409 (552)
T ss_dssp EESSCHHHHHHHHHHHHHHHTT-----CSSCEEEESSHHH
T ss_pred ECCCCChHHHHHHHHHHhhccc-----CCceEEEECCcHH
Confidence 5999999999999999998765 44 674 777543
No 211
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.10 E-value=0.0034 Score=65.31 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||++.++...
T Consensus 50 ~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CBCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999865
No 212
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.99 E-value=0.017 Score=56.84 Aligned_cols=19 Identities=42% Similarity=0.744 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||.++|+...
T Consensus 45 ~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 3999999999999999854
No 213
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.96 E-value=0.006 Score=70.91 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.2
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
.||||+|||||+++|+|...
T Consensus 244 ~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 244 YGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CSCTTSSHHHHHHHHHHTTT
T ss_pred ECcCCCCHHHHHHHHHHHcC
Confidence 59999999999999999864
No 214
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.87 E-value=0.02 Score=59.87 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||.++|+...
T Consensus 123 ~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 123 FGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp ESSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 3999999999999999754
No 215
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.65 E-value=0.0037 Score=57.14 Aligned_cols=17 Identities=41% Similarity=0.784 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHHc
Q 007344 1 MGPSGSGKTTLLNVLAG 17 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG 17 (607)
+|||||||||++++|.-
T Consensus 29 ~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAILV 45 (149)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999999974
No 216
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.63 E-value=0.0018 Score=67.76 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=24.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK 36 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~ 36 (607)
+|++|||||||+|.|+|...+. +|+|.+.+.
T Consensus 80 vG~pgaGKSTLln~L~~~~~~~-----~~~v~V~~~ 110 (349)
T 2www_A 80 SGPPGAGKSTFIEYFGKMLTER-----GHKLSVLAV 110 (349)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHT-----TCCEEEEEC
T ss_pred EcCCCCCHHHHHHHHHHHhhhc-----CCeEEEEee
Confidence 5999999999999999977654 466655443
No 217
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.61 E-value=0.00075 Score=74.47 Aligned_cols=141 Identities=14% Similarity=0.082 Sum_probs=69.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCC-----------------------C--CC--------CccceEEEECCeeCCCc------
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA-----------------------S--PR--------LHLSGLLEVNGKPSSNK------ 41 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~-----------------------~--~~--------~~~~G~I~~~G~~~~~~------ 41 (607)
+|+|||||||||++|...... . .. ..-.+.+.+||.+.+..
T Consensus 66 ~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ing~~v~~~~l~~~~ 145 (517)
T 4ad8_A 66 TGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAARLSGEVVSVRELQEWA 145 (517)
T ss_dssp EESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEESSSSBCCHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEEECCEECCHHHHHHHh
Confidence 599999999999999654210 0 00 00145688888876542
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHHHHccCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCCcCCCCCHHHHHHHHH
Q 007344 42 AYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLG-LVSCADSNVGDAKVRGISGGEKKRLSL 120 (607)
Q Consensus 42 ~~~i~yv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~d~~vg~~~~~~LSGGerqRvsI 120 (607)
...+..++|++.+....+. +...|--..................++++.++ +.... ......++-.+.|...|
T Consensus 146 ~~li~i~~q~~~~~l~~~~-~rr~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~l~~l~~ql~ei 219 (517)
T 4ad8_A 146 QGRLTIHWQHSAVSLLSPA-NQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASQ-----RERARQIDLLAFQVQEI 219 (517)
T ss_dssp TTTEEEESGGGGGTTTSHH-HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred hhheEEeCCchHHhcCCHH-HHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHH
Confidence 1237888998766554333 22222211100000000111111222222221 10000 01123466777788888
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeE
Q 007344 121 ACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTV 162 (607)
Q Consensus 121 a~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tv 162 (607)
+.+ .|.+.....+.+.++++.+.+..+
T Consensus 220 ~~~---------------~l~~~E~e~L~~~~~~L~~~~~~~ 246 (517)
T 4ad8_A 220 SEV---------------SPDPGEEEGLNTELSRLSNLHESS 246 (517)
T ss_dssp HHH---------------CCCSSCHHHHHHHHHHHHHHC---
T ss_pred Hhc---------------CCCCCcHHHHHHHHHHHHHHHHHH
Confidence 776 344455677777888887666555
No 218
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.52 E-value=0.0094 Score=55.04 Aligned_cols=19 Identities=47% Similarity=0.760 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|+|..
T Consensus 10 vG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EESTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 219
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.51 E-value=0.0039 Score=60.16 Aligned_cols=19 Identities=53% Similarity=0.770 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|||||||||+.++|++.+
T Consensus 11 ~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999999865
No 220
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.36 E-value=0.0063 Score=62.45 Aligned_cols=51 Identities=8% Similarity=0.096 Sum_probs=30.2
Q ss_pred hhCCCeEEEeCCC-CCCCHHHHHHHHH-HHHHHHhcCCeEEEEecCChhHHHh
Q 007344 125 IASPSVIYADEPT-TGLDAFQAEKVME-ALRQLAQDGHTVICSIHQPRGSVYF 175 (607)
Q Consensus 125 ~~~p~illLDEPt-sGLD~~~~~~i~~-~L~~la~~g~tvi~~~H~p~~~i~~ 175 (607)
+.++++|++||.- ..++......++. ++......++.+|++++.+..++..
T Consensus 212 ~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~ 264 (308)
T 2qgz_A 212 VKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLER 264 (308)
T ss_dssp HHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHT
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 4578999999983 2344444444554 5655444567888888876655544
No 221
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.33 E-value=0.095 Score=53.83 Aligned_cols=19 Identities=37% Similarity=0.719 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||.++++...
T Consensus 51 ~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp ESSSSSCHHHHHHHHHHHT
T ss_pred ECCCCccHHHHHHHHHHHc
Confidence 3999999999999999864
No 222
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.22 E-value=0.029 Score=58.84 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=45.3
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCCHH-------------HHHHHHHHHHHH---H-hcCCeEEEEecCChh------
Q 007344 117 RLSLACELI--ASPSVIYADEPTTGLDAF-------------QAEKVMEALRQL---A-QDGHTVICSIHQPRG------ 171 (607)
Q Consensus 117 RvsIa~aL~--~~p~illLDEPtsGLD~~-------------~~~~i~~~L~~l---a-~~g~tvi~~~H~p~~------ 171 (607)
-..+++.++ .+++++++|+++.-.... .++.+.+.+++| + +.|.+||++.|-...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 345566664 579999999999866311 122344444444 3 568898888774221
Q ss_pred ---------HHHhhhcceeeecCCeeeeeC
Q 007344 172 ---------SVYFKFDDIVLLTEGKLVYAG 192 (607)
Q Consensus 172 ---------~i~~~~D~v~lL~~G~iv~~G 192 (607)
.+...+|-++.+...+....|
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred CCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 345567877777766544333
No 223
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.15 E-value=0.0053 Score=65.91 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMAS 22 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~ 22 (607)
+|||||||||||++|++...+.
T Consensus 32 ~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 32 IGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp ECSTTSSHHHHHHHHHHHTTC-
T ss_pred ECCCCCCHHHHHHHHHhhhccc
Confidence 5999999999999999987654
No 224
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.14 E-value=0.0052 Score=58.39 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHc
Q 007344 1 MGPSGSGKTTLLNVLAG 17 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG 17 (607)
+|+|||||||+.+.|++
T Consensus 7 ~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 49999999999999998
No 225
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.07 E-value=0.047 Score=49.06 Aligned_cols=43 Identities=12% Similarity=0.004 Sum_probs=29.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 007344 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (607)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~ 171 (607)
+..+|++||.- .|++.....+.+.++.. ..+..+|+++..+..
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~ 118 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLV 118 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHH
Confidence 44689999984 67888888888877332 224567777776543
No 226
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.98 E-value=0.0081 Score=54.90 Aligned_cols=19 Identities=37% Similarity=0.709 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|+||+|||||++.++|..
T Consensus 9 vG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 9 IGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp ECSTTSSHHHHHHHHHCCS
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 6999999999999999964
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.96 E-value=0.0066 Score=57.96 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+||||||||||.+.|+..++
T Consensus 18 ~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp ECCTTSCHHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhCc
Confidence 59999999999999998653
No 228
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.90 E-value=0.0076 Score=56.67 Aligned_cols=34 Identities=38% Similarity=0.397 Sum_probs=23.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK 36 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~ 36 (607)
+|+||||||||++.|.+.++..+ ..-|.|..++.
T Consensus 12 ~G~sGsGKTTl~~~l~~~l~~~g--~~v~~i~~~~~ 45 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLIPALCARG--IRPGLIKHTHH 45 (174)
T ss_dssp ECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCC
T ss_pred EeCCCCCHHHHHHHHHHhccccC--CceeEEeeCCC
Confidence 49999999999999998764321 11366665543
No 229
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.82 E-value=0.0065 Score=67.41 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=25.0
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCe
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK 36 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~ 36 (607)
+||||+|||||+++|++...+. .|.|.++|.
T Consensus 114 ~Gp~GtGKTtlar~ia~~l~~~-----~~~i~~~~~ 144 (543)
T 3m6a_A 114 AGPPGVGKTSLAKSIAKSLGRK-----FVRISLGGV 144 (543)
T ss_dssp ESSSSSSHHHHHHHHHHHHTCE-----EEEECCCC-
T ss_pred ECCCCCCHHHHHHHHHHhcCCC-----eEEEEeccc
Confidence 4999999999999999988654 577766653
No 230
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.77 E-value=0.0087 Score=56.83 Aligned_cols=19 Identities=42% Similarity=0.597 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|+|||||||+.+.|++.+
T Consensus 24 ~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999864
No 231
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.71 E-value=0.009 Score=62.76 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHH
Q 007344 78 VEERDEYVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACE 123 (607)
Q Consensus 78 ~~~~~~~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~a 123 (607)
.+++++.+++++..+... .. .....++...|||-++.+.
T Consensus 128 p~~RR~flD~~l~~~~p~-y~------~~l~~y~~~l~qRn~lLk~ 166 (359)
T 2o5v_A 128 PSGRRAYLDSLLSRLSAR-YG------EQLSRYERTVSQRNAALRG 166 (359)
T ss_dssp HHHHHHHHHHHHHHHCHH-HH------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhcccHH-HH------HHHHHHHHHHHHHHHHHhh
Confidence 567778888887776541 11 1234578899999999884
No 232
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.68 E-value=0.0097 Score=56.55 Aligned_cols=19 Identities=47% Similarity=0.586 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|+|||||||+.+.|++.+
T Consensus 31 ~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHc
Confidence 5999999999999999865
No 233
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.66 E-value=0.0049 Score=59.19 Aligned_cols=32 Identities=34% Similarity=0.419 Sum_probs=24.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccce--EEEECCee
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSG--LLEVNGKP 37 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G--~I~~~G~~ 37 (607)
+|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 31 ~G~~GsGKsT~~~~l~~~l~~~-----~g~~~~~~~~d~ 64 (211)
T 1m7g_A 31 TGLSASGKSTLAVELEHQLVRD-----RRVHAYRLDGDN 64 (211)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHH-----HCCCEEEECHHH
T ss_pred ECCCCCCHHHHHHHHHHHhccc-----cCCcEEEECChH
Confidence 4999999999999999987533 45 66666543
No 234
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.60 E-value=0.011 Score=56.72 Aligned_cols=18 Identities=39% Similarity=0.722 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|||||||||++++|.-.
T Consensus 29 ~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 29 IGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999999998643
No 235
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.51 E-value=0.012 Score=53.81 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 7 ~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp ECSSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999764
No 236
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.50 E-value=0.012 Score=54.40 Aligned_cols=18 Identities=39% Similarity=0.804 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.|+|.
T Consensus 13 vG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp ECSTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999999985
No 237
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.47 E-value=0.0055 Score=64.42 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=17.9
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
+|+||+|||||++.|.|....
T Consensus 43 vG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 43 VGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp CCCTTSCHHHHHHHHTTCCC-
T ss_pred EcCCCCCHHHHHHHHhCCCCC
Confidence 699999999999999886443
No 238
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.44 E-value=0.012 Score=54.70 Aligned_cols=19 Identities=53% Similarity=0.697 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.++|..
T Consensus 8 vG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp ESCTTSSHHHHHHHHTCC-
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 6999999999999999964
No 239
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.31 E-value=0.013 Score=54.39 Aligned_cols=21 Identities=43% Similarity=0.534 Sum_probs=18.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
+|++||||||+.+.|++.+++
T Consensus 11 ~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp ECCTTSSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhh
Confidence 499999999999999997643
No 240
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.29 E-value=0.18 Score=54.12 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCeEEEEe
Q 007344 109 GISGGEKKRLSLACELIASPSVIYADEPTTGLDAFQAEKVMEALRQLA-QDGHTVICSI 166 (607)
Q Consensus 109 ~LSGGerqRvsIa~aL~~~p~illLDEPtsGLD~~~~~~i~~~L~~la-~~g~tvi~~~ 166 (607)
.||..+.+|+.-|...+.+.++.+.|+|.. + ..++...++++. +.|..+|++=
T Consensus 264 ~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s---~~~l~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 264 QLTDRDFSRLVDVASRLSEAPIYIDDTPDL--T---LMEVRARARRLVSQNQVGLIIID 317 (444)
T ss_dssp GCCHHHHHHHHHHHHHHHTSCEEEECCTTC--B---HHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCC--C---HHHHHHHHHHHHHHcCCCEEEEc
Confidence 599999999999998888888998887643 3 244566666665 3455655553
No 241
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.24 E-value=0.0094 Score=55.81 Aligned_cols=21 Identities=48% Similarity=0.561 Sum_probs=18.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
+|++||||||+.+.|++.+..
T Consensus 19 ~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHHh
Confidence 499999999999999998754
No 242
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.18 E-value=0.016 Score=53.53 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
.|+|||||||+.+.|+..+.
T Consensus 9 ~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHHhcC
Confidence 49999999999999998753
No 243
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.10 E-value=0.13 Score=51.78 Aligned_cols=20 Identities=45% Similarity=0.620 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
.||+|+|||||.+.++..+.
T Consensus 73 ~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 73 TGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp EECTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 39999999999999988653
No 244
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.08 E-value=0.017 Score=54.88 Aligned_cols=20 Identities=50% Similarity=0.758 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+||||||||||++.|....+
T Consensus 7 ~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhCC
Confidence 59999999999999976543
No 245
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.01 E-value=0.024 Score=60.14 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|+||+|||||+|+|+|.
T Consensus 28 VG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 28 VGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp ECCSSSSHHHHHHHHHC-
T ss_pred ECCCCCCHHHHHHHHHCC
Confidence 599999999999999997
No 246
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.85 E-value=0.018 Score=57.35 Aligned_cols=19 Identities=47% Similarity=0.662 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|+|||||||+.++|++.+
T Consensus 54 ~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 5999999999999999864
No 247
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.78 E-value=0.048 Score=50.75 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 26 vG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp ECCTTSCHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999998776643
No 248
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.69 E-value=0.011 Score=61.54 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.3
Q ss_pred CCCCCCcHHHHHHHHHcCcCCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMAS 22 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~ 22 (607)
+|++|+|||||++.|+|...+.
T Consensus 62 ~G~~g~GKSTl~~~l~~~~~~~ 83 (341)
T 2p67_A 62 TGTPGAGKSTFLEAFGMLLIRE 83 (341)
T ss_dssp EECTTSCHHHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHHHhc
Confidence 5999999999999999987543
No 249
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.65 E-value=0.2 Score=51.20 Aligned_cols=68 Identities=15% Similarity=0.053 Sum_probs=40.3
Q ss_pred HHHHHHHHhh---CCCeEEEeCCCCCCC--------HH----HHHHHHHHHHHHH-hcCCeEEEEecCCh----------
Q 007344 117 RLSLACELIA---SPSVIYADEPTTGLD--------AF----QAEKVMEALRQLA-QDGHTVICSIHQPR---------- 170 (607)
Q Consensus 117 RvsIa~aL~~---~p~illLDEPtsGLD--------~~----~~~~i~~~L~~la-~~g~tvi~~~H~p~---------- 170 (607)
-+..+..++. +++++++|.-++-.. .. ...+++..|++++ +.|.+||++.|-..
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence 3444555553 589999999876321 11 1245666677766 45778887766311
Q ss_pred -----hHHHhhhcceeeec
Q 007344 171 -----GSVYFKFDDIVLLT 184 (607)
Q Consensus 171 -----~~i~~~~D~v~lL~ 184 (607)
..+...+|.++.|+
T Consensus 271 ~~~g~~~~~~~~d~~i~l~ 289 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVR 289 (322)
T ss_dssp EESSHHHHHHHCSEEEEEE
T ss_pred CCCCcHHHHhcCcEEEEEE
Confidence 12445567777775
No 250
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.57 E-value=0.024 Score=52.38 Aligned_cols=19 Identities=53% Similarity=0.700 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 10 ~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 10 IGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHc
Confidence 4999999999999999754
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.46 E-value=0.025 Score=51.41 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=14.3
Q ss_pred CCCCCCcHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVL 15 (607)
Q Consensus 1 lGpsGsGKSTLL~~L 15 (607)
.|++||||||+.+.|
T Consensus 7 ~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL 21 (179)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 499999999999999
No 252
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.41 E-value=0.024 Score=56.29 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||||||||||.+.|++..
T Consensus 7 ~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHhcC
Confidence 5999999999999999864
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.38 E-value=0.027 Score=51.77 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHc
Q 007344 1 MGPSGSGKTTLLNVLAG 17 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG 17 (607)
.|++||||||+.+.|+.
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 49999999999999987
No 254
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.37 E-value=0.027 Score=52.32 Aligned_cols=18 Identities=44% Similarity=0.732 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++||||||+.+.|+..
T Consensus 10 ~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 255
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.31 E-value=0.028 Score=52.81 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHhc
Confidence 4999999999999999864
No 256
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.23 E-value=0.018 Score=57.06 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=23.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS 38 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~ 38 (607)
+|+|||||||+.+.|+..+. .+.+.+++..+
T Consensus 38 ~G~~GsGKSTla~~L~~~l~-------~~~~~~~~D~~ 68 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQKEFQ-------GNIVIIDGDSF 68 (253)
T ss_dssp ESCGGGTTHHHHHHHHHHTT-------TCCEEECGGGG
T ss_pred ECCCCCCHHHHHHHHHHhcC-------CCcEEEecHHH
Confidence 49999999999999998753 24466676543
No 257
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.21 E-value=0.15 Score=54.84 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHh--hCCC--eEEEeCCCC---CC---C-HHHHHHHHHHHHHHHh-cCCeEEEEecC
Q 007344 109 GISGGEKKRLSLACELI--ASPS--VIYADEPTT---GL---D-AFQAEKVMEALRQLAQ-DGHTVICSIHQ 168 (607)
Q Consensus 109 ~LSGGerqRvsIa~aL~--~~p~--illLDEPts---GL---D-~~~~~~i~~~L~~la~-~g~tvi~~~H~ 168 (607)
++|-.+-+. .++.+. .+++ ++++|--+. +- + .....++.+.|+.+++ .|.+||+++|-
T Consensus 290 ~~s~~~i~~--~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 290 GQSVNYIWS--KTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp SCBHHHHHH--HHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCCHHHHHH--HHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 456555332 334443 3789 999996542 11 1 1233467778888875 58899999884
No 258
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.07 E-value=0.036 Score=51.43 Aligned_cols=19 Identities=32% Similarity=0.407 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 9 ~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998754
No 259
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.00 E-value=0.034 Score=54.82 Aligned_cols=19 Identities=47% Similarity=0.900 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||||+|||||+++|++..
T Consensus 51 ~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 51 VGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHc
Confidence 4999999999999999865
No 260
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.86 E-value=0.035 Score=51.54 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999998754
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.85 E-value=0.036 Score=51.40 Aligned_cols=18 Identities=50% Similarity=0.625 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.|++||||||+.+.|+..
T Consensus 17 ~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 17 TGTPGVGKTTLGKELASK 34 (180)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 499999999999999854
No 262
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.83 E-value=0.048 Score=51.40 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 31 vG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEETTSSHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999874
No 263
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.81 E-value=0.031 Score=55.86 Aligned_cols=47 Identities=15% Similarity=0.064 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCeEEEEecCChhHHHhhhcceeee
Q 007344 136 PTTGLDAFQAEKVMEALRQLAQD-GHTVICSIHQPRGSVYFKFDDIVLL 183 (607)
Q Consensus 136 PtsGLD~~~~~~i~~~L~~la~~-g~tvi~~~H~p~~~i~~~~D~v~lL 183 (607)
|||+++.....++.+.+.+...+ +.+..+..|.. .++...++++.-.
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~~~ 191 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHISEL 191 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHHHH
Confidence 88998888888888888887643 34445566663 4566666665544
No 264
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.73 E-value=0.065 Score=48.74 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 15 ~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EECTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999999863
No 265
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.67 E-value=0.03 Score=59.12 Aligned_cols=45 Identities=11% Similarity=0.098 Sum_probs=37.6
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 007344 127 SPSVIYADEPTTGLD---AFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (607)
Q Consensus 127 ~p~illLDEPtsGLD---~~~~~~i~~~L~~la~~g~tvi~~~H~p~~ 171 (607)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|..
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999877774 667778888888888889999999999864
No 266
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.64 E-value=0.054 Score=50.61 Aligned_cols=18 Identities=44% Similarity=0.733 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 29 vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999984
No 267
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.62 E-value=0.034 Score=51.62 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
.|++||||||+.+.|+..+.
T Consensus 7 ~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EECTTSCHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999998653
No 268
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.62 E-value=0.038 Score=51.37 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 54 vG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 54 AGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 269
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.53 E-value=0.039 Score=49.58 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 11 ~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp ECSTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999854
No 270
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.53 E-value=0.035 Score=51.73 Aligned_cols=19 Identities=47% Similarity=0.581 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 11 TGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998643
No 271
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.42 E-value=0.046 Score=49.19 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp ECCTTSSHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999853
No 272
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.41 E-value=0.038 Score=54.05 Aligned_cols=21 Identities=48% Similarity=0.752 Sum_probs=18.7
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
.|++||||||+++.|+..+..
T Consensus 32 ~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp ECCTTSCHHHHHHHHHHHHTT
T ss_pred EcCCCCCHHHHHHHHHHHHhc
Confidence 499999999999999998753
No 273
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.39 E-value=0.044 Score=53.91 Aligned_cols=19 Identities=42% Similarity=0.686 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|||||||||+.+.|+..+
T Consensus 15 ~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999653
No 274
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.35 E-value=0.047 Score=52.31 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHc
Q 007344 1 MGPSGSGKTTLLNVLAG 17 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG 17 (607)
.|++||||||+.+.|+.
T Consensus 10 ~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999987
No 275
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.35 E-value=0.043 Score=51.28 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.2
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
+|++|||||||++.|++.++.
T Consensus 10 ~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp ECCTTSSHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhhHh
Confidence 499999999999999987643
No 276
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.30 E-value=0.049 Score=49.36 Aligned_cols=19 Identities=42% Similarity=0.788 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.|..
T Consensus 10 ~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC-
T ss_pred ECCCCccHHHHHHHHhcCC
Confidence 6999999999999999864
No 277
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.26 E-value=0.045 Score=48.86 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 7 ~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 7 VGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp ECCTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999864
No 278
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.21 E-value=0.16 Score=55.23 Aligned_cols=72 Identities=14% Similarity=0.235 Sum_probs=52.4
Q ss_pred cCCCCCHHHHHHHHHH--HHHhh---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 007344 106 KVRGISGGEKKRLSLA--CELIA---------------SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168 (607)
Q Consensus 106 ~~~~LSGGerqRvsIa--~aL~~---------------~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~ 168 (607)
..++.||||+|-.-+| .+++. .-.++++||. +-+|...+...+++++++ |.-+|+++-.
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~ 451 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE 451 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc
Confidence 3678999999964443 33332 1247999999 999999999999999977 6666666643
Q ss_pred ChhHHHhhhcceeeec
Q 007344 169 PRGSVYFKFDDIVLLT 184 (607)
Q Consensus 169 p~~~i~~~~D~v~lL~ 184 (607)
.+....|.++.+-
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 3445567777764
No 279
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.20 E-value=0.048 Score=50.97 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++||||||+.+.|+..
T Consensus 16 ~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999975
No 280
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.18 E-value=0.046 Score=48.92 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 10 ~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999999754
No 281
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.15 E-value=0.039 Score=49.19 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EESTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999998864
No 282
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.12 E-value=0.039 Score=49.68 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+|++|+|||||++.+.|...
T Consensus 8 vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 8 LGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EESTTSSHHHHHHHHCCC--
T ss_pred ECCCCCCHHHHHHHHcCccc
Confidence 59999999999999988643
No 283
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.12 E-value=0.048 Score=48.73 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998754
No 284
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.11 E-value=0.053 Score=48.93 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 8 vG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 8 VGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp ECSTTSSHHHHHHHHHCC-
T ss_pred ECCCCCCHHHHHHHHHhcc
Confidence 5999999999999998754
No 285
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.00 E-value=0.035 Score=59.52 Aligned_cols=33 Identities=27% Similarity=0.177 Sum_probs=26.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCeeC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPS 38 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~~ 38 (607)
+|+|||||||++..|++.+.+. .|+|.+.+.+.
T Consensus 104 ~G~~GsGKTT~~~~LA~~l~~~-----g~~Vllvd~D~ 136 (425)
T 2ffh_A 104 VGLQGSGKTTTAAKLALYYKGK-----GRRPLLVAADT 136 (425)
T ss_dssp ECCTTSSHHHHHHHHHHHHHTT-----TCCEEEEECCS
T ss_pred ECCCCCCHHHHHHHHHHHHHHc-----CCeEEEeeccc
Confidence 4999999999999999998765 56777765543
No 286
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.97 E-value=0.044 Score=55.47 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|||||||||+.+.|+...
T Consensus 39 ~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp ECCTTSCTHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 287
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.97 E-value=0.051 Score=48.89 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 12 ~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999875
No 288
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.96 E-value=0.05 Score=49.53 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 15 ~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp ECCTTSCHHHHHHHHCSCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 289
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.91 E-value=0.027 Score=53.51 Aligned_cols=20 Identities=40% Similarity=0.665 Sum_probs=17.8
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
.|++||||||+++.|+..+.
T Consensus 6 ~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHHH
Confidence 49999999999999998764
No 290
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.88 E-value=0.053 Score=48.88 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 12 ~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp ECCTTSCHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999764
No 291
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.86 E-value=0.083 Score=47.36 Aligned_cols=19 Identities=16% Similarity=0.371 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999765
No 292
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.84 E-value=0.063 Score=50.11 Aligned_cols=19 Identities=47% Similarity=0.641 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999999865
No 293
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.78 E-value=0.11 Score=46.48 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp ECSTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998754
No 294
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.73 E-value=0.11 Score=48.37 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 20 ~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999998754
No 295
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.73 E-value=0.056 Score=49.15 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 13 ~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998754
No 296
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.71 E-value=0.056 Score=49.21 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999998854
No 297
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.71 E-value=0.059 Score=51.43 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999997643
No 298
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.70 E-value=0.061 Score=48.92 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp ESCTTTTHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999854
No 299
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.67 E-value=0.061 Score=54.06 Aligned_cols=19 Identities=42% Similarity=0.786 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|+|..
T Consensus 9 vG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp ECCTTSSHHHHHHHHHCCC
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999964
No 300
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.58 E-value=0.063 Score=49.06 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 8 ~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 8 VGARGCGMTTVGRELARAL 26 (173)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 301
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.51 E-value=0.052 Score=50.39 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 29 ~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC-
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999863
No 302
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=91.50 E-value=0.063 Score=52.91 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHh---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc---CCeEEEEecC
Q 007344 114 EKKRLSLACELI---ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQD---GHTVICSIHQ 168 (607)
Q Consensus 114 erqRvsIa~aL~---~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~---g~tvi~~~H~ 168 (607)
++.+-.+.+++. .+++++++--+.+.++. ....+++.++++... +.++|+++|-
T Consensus 89 ~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK 148 (247)
T 3lxw_A 89 DPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRK 148 (247)
T ss_dssp STTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECG
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEch
Confidence 344444444442 67777665544455543 445566666665422 5788888885
No 303
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.48 E-value=0.074 Score=50.18 Aligned_cols=20 Identities=30% Similarity=0.425 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
.|++||||||+.+.|+..+.
T Consensus 10 ~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 10 EGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp ECCTTSSHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHHh
Confidence 49999999999999998654
No 304
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.48 E-value=0.051 Score=48.88 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 9 ~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EESTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999999864
No 305
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.47 E-value=0.05 Score=50.37 Aligned_cols=18 Identities=50% Similarity=0.735 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 22 vG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EESTTSSHHHHHHHHCCS
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999885
No 306
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=91.46 E-value=0.21 Score=51.54 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=15.8
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.||+|+|||||...++..
T Consensus 129 ~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 129 TGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ECSCSSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHh
Confidence 399999999999999853
No 307
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.45 E-value=0.059 Score=52.49 Aligned_cols=19 Identities=37% Similarity=0.705 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|++.+
T Consensus 22 ~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 22 DGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp ECSSCSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 5999999999999999853
No 308
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.41 E-value=0.054 Score=50.02 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 29 ~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEBTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHHcCc
Confidence 5999999999999999864
No 309
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.40 E-value=0.055 Score=50.79 Aligned_cols=18 Identities=39% Similarity=0.540 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.|++||||||+.+.|+..
T Consensus 14 ~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EECTTSCHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHC
Confidence 489999999999999974
No 310
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.38 E-value=0.077 Score=49.90 Aligned_cols=19 Identities=32% Similarity=0.274 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 10 ~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp ECCTTSSHHHHHHHHHHTS
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4999999999999999875
No 311
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.33 E-value=0.068 Score=51.04 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998643
No 312
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=91.33 E-value=0.063 Score=56.32 Aligned_cols=16 Identities=31% Similarity=0.758 Sum_probs=14.8
Q ss_pred CCCCCCcHHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLA 16 (607)
Q Consensus 1 lGpsGsGKSTLL~~La 16 (607)
.|||||||||+|.+|.
T Consensus 31 ~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 31 IGENGSGKSSIFEAVF 46 (371)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4999999999999986
No 313
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.32 E-value=0.067 Score=55.13 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=18.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
.||+|+||||+++++++.+.+
T Consensus 52 ~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp ECSSSSSHHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHcC
Confidence 499999999999999997644
No 314
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=91.32 E-value=0.093 Score=55.04 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|.+|+|||||+|.|+|..
T Consensus 8 VG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 8 VGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp ECCTTSSHHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999943
No 315
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.30 E-value=0.065 Score=48.07 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 12 ~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999753
No 316
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.28 E-value=0.13 Score=47.20 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 10 ~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999864
No 317
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.28 E-value=0.13 Score=46.89 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 12 ~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EESTTSSHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHcC
Confidence 599999999999999854
No 318
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.23 E-value=0.075 Score=48.34 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 12 ~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp ECCTTSSHHHHHHHHHGGG
T ss_pred ECcCCCCHHHHHHHHHhCc
Confidence 5999999999999999854
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.22 E-value=0.028 Score=57.39 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=24.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccceEEEECCee
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP 37 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~G~I~~~G~~ 37 (607)
+|++|+||||++..|++.+... .|+|.+.+.+
T Consensus 104 ~G~~G~GKTT~~~~la~~~~~~-----g~~v~l~~~D 135 (297)
T 1j8m_F 104 VGVQGTGKTTTAGKLAYFYKKK-----GFKVGLVGAD 135 (297)
T ss_dssp ECSSCSSTTHHHHHHHHHHHHT-----TCCEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEecC
Confidence 4999999999999999987654 4566654433
No 320
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.22 E-value=0.067 Score=49.48 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 13 ~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 13 LGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999999864
No 321
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.21 E-value=0.13 Score=48.59 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 32 vG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EESTTSSHHHHHHHHHHSS
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999988754
No 322
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.20 E-value=0.068 Score=48.20 Aligned_cols=19 Identities=42% Similarity=0.531 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 13 ~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998753
No 323
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.16 E-value=0.074 Score=49.35 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.|++||||||+.+.|+..
T Consensus 9 ~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 9 LGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 324
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.11 E-value=0.061 Score=49.53 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 7 ~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEBTTSSHHHHHHHHHSCC
T ss_pred ECCCCCCHHHHHHHHhCcC
Confidence 5999999999999999864
No 325
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.10 E-value=2 Score=46.66 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=42.8
Q ss_pred HHHHHHHh--hCCCeEEEeCCCCCC-------CH-HHHHHHHHHHHHHHh-cCCeEEEEecCCh----------------
Q 007344 118 LSLACELI--ASPSVIYADEPTTGL-------DA-FQAEKVMEALRQLAQ-DGHTVICSIHQPR---------------- 170 (607)
Q Consensus 118 vsIa~aL~--~~p~illLDEPtsGL-------D~-~~~~~i~~~L~~la~-~g~tvi~~~H~p~---------------- 170 (607)
+..++.++ .+|+++++|=-+. + +. ....++++.|+++++ .|.+||+++|-..
T Consensus 343 ~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l~ 421 (503)
T 1q57_A 343 LAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSIT 421 (503)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCSS
T ss_pred HHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCChh
Confidence 34445554 3699999995443 2 21 233457778888874 5889999988542
Q ss_pred -----hHHHhhhcceeeec
Q 007344 171 -----GSVYFKFDDIVLLT 184 (607)
Q Consensus 171 -----~~i~~~~D~v~lL~ 184 (607)
..+...+|-|+.|.
T Consensus 422 dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 422 DLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SCSSSSHHHHHCSEEEEEE
T ss_pred hhccchHhhecCcEEEEEE
Confidence 13455678888884
No 326
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.96 E-value=0.074 Score=47.66 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 6 ~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999864
No 327
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.94 E-value=0.073 Score=48.93 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 17 ~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999754
No 328
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.93 E-value=0.083 Score=48.79 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.5
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
+|++|+|||||++.+.|....
T Consensus 20 vG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 20 YGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp ECSTTSSHHHHHHHHHHTSCG
T ss_pred ECCCCCCHHHHHHHHHhhccc
Confidence 599999999999999997643
No 329
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.92 E-value=0.068 Score=49.84 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 15 ~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998643
No 330
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.92 E-value=0.082 Score=49.78 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 8 ~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 8 DGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999999854
No 331
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=90.83 E-value=0.075 Score=49.36 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 31 ~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp ESSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999854
No 332
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.83 E-value=0.068 Score=51.36 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 11 SGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 333
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.82 E-value=0.077 Score=48.13 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 21 ~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 334
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.80 E-value=0.077 Score=49.06 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|++..
T Consensus 27 vG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 335
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.79 E-value=0.095 Score=47.64 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp ESCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 336
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.77 E-value=0.077 Score=50.40 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 18 ~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 337
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.76 E-value=0.095 Score=48.64 Aligned_cols=19 Identities=47% Similarity=0.452 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998755
No 338
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=90.76 E-value=0.078 Score=48.45 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 24 ~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhhCC
Confidence 5999999999999999754
No 339
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.73 E-value=0.079 Score=48.26 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+|++|+|||||++.+.+...
T Consensus 16 ~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp ECSTTSSHHHHHHHHHHSCC
T ss_pred ECcCCCCHHHHHHHHHhCCC
Confidence 59999999999999988543
No 340
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=90.61 E-value=0.084 Score=48.13 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 18 ~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp ECCTTSCHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 341
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.60 E-value=0.17 Score=47.45 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EESTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 342
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.58 E-value=0.089 Score=48.75 Aligned_cols=19 Identities=47% Similarity=0.609 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 8 ~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998753
No 343
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=90.57 E-value=0.069 Score=53.39 Aligned_cols=19 Identities=47% Similarity=0.546 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|.|..
T Consensus 14 vG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 14 VGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EECTTSSHHHHHHHHSSSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998864
No 344
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.48 E-value=0.073 Score=48.30 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 20 ~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998753
No 345
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=90.47 E-value=0.079 Score=49.51 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 18 ~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 346
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.46 E-value=0.051 Score=49.79 Aligned_cols=17 Identities=47% Similarity=0.644 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHc
Q 007344 1 MGPSGSGKTTLLNVLAG 17 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG 17 (607)
+|++|+|||||++.+.+
T Consensus 24 ~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEETTSSHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 59999999999999985
No 347
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.43 E-value=0.079 Score=51.15 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 13 ~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998643
No 348
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.38 E-value=0.091 Score=48.36 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 24 ~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp ECSTTSSHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999865
No 349
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.28 E-value=0.092 Score=49.65 Aligned_cols=19 Identities=37% Similarity=0.392 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 16 ~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4999999999999998754
No 350
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.25 E-value=0.2 Score=46.46 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 27 vG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCcHHHHHHHHHhCC
Confidence 6999999999999998754
No 351
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.22 E-value=0.085 Score=52.42 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|.+|||||||+|.|+|..
T Consensus 7 vG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 7 IGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EESTTSSHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999963
No 352
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.20 E-value=0.12 Score=47.27 Aligned_cols=19 Identities=37% Similarity=0.691 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||++.++...
T Consensus 49 ~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999999998865
No 353
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.18 E-value=0.57 Score=58.24 Aligned_cols=71 Identities=20% Similarity=0.170 Sum_probs=45.5
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-hcCCeEEEEecC---------
Q 007344 117 RLSLACELI--ASPSVIYADEPTTGLD-A------------FQAEKVMEALRQL---A-QDGHTVICSIHQ--------- 168 (607)
Q Consensus 117 RvsIa~aL~--~~p~illLDEPtsGLD-~------------~~~~~i~~~L~~l---a-~~g~tvi~~~H~--------- 168 (607)
-...++.++ .+|+++++|+.++=.. . ...+++.+.+++| + +.|.+||++.|-
T Consensus 798 i~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~G 877 (1706)
T 3cmw_A 798 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 877 (1706)
T ss_dssp HHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSS
T ss_pred HHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccC
Confidence 344444444 4799999999987552 1 1234455555554 4 568899998882
Q ss_pred -C-----hhHHHhhhcceeeecCCe
Q 007344 169 -P-----RGSVYFKFDDIVLLTEGK 187 (607)
Q Consensus 169 -p-----~~~i~~~~D~v~lL~~G~ 187 (607)
| +..+.+.+|-++.+.+++
T Consensus 878 dp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 878 NPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp CCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CccccCCcchhhheeeEEEEEEecc
Confidence 2 224667788888886443
No 354
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.17 E-value=0.1 Score=53.26 Aligned_cols=19 Identities=47% Similarity=0.643 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|.|..
T Consensus 13 vG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp ECSTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCc
Confidence 5999999999999999864
No 355
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.15 E-value=0.23 Score=45.41 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 24 ~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999764
No 356
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.14 E-value=0.095 Score=48.54 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 22 ~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.14 E-value=0.1 Score=49.18 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 26 ~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 358
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.13 E-value=0.096 Score=49.03 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 359
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.10 E-value=0.1 Score=49.16 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.|++||||||+.+.|+..
T Consensus 21 ~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 360
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.09 E-value=0.082 Score=48.54 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 16 ~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EESTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998764
No 361
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.08 E-value=0.1 Score=49.97 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 10 ~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999998753
No 362
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.08 E-value=0.097 Score=48.47 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 28 vG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.98 E-value=0.081 Score=48.78 Aligned_cols=19 Identities=42% Similarity=0.587 Sum_probs=12.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp ECCC----CHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999998653
No 364
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.96 E-value=0.11 Score=50.23 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.|++||||||+.+.|+-.
T Consensus 6 ~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 365
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.95 E-value=0.082 Score=49.68 Aligned_cols=18 Identities=44% Similarity=0.741 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.++|.
T Consensus 29 vG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 29 VGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp ECSTTSSHHHHHHHTCCE
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 699999999999999864
No 366
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.89 E-value=0.11 Score=48.53 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp ECSTTSSHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 367
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.83 E-value=0.1 Score=47.63 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 11 ~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp ECSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998643
No 368
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.76 E-value=0.1 Score=48.61 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 32 vG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp ECSTTSSHHHHHHHHCC--
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998754
No 369
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.74 E-value=0.1 Score=54.44 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.0
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+|++||||||+.++|++.+.
T Consensus 30 ~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 30 VGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp ECCTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHhC
Confidence 59999999999999999753
No 370
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=89.71 E-value=0.11 Score=48.09 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 26 ~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999998753
No 371
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.69 E-value=0.12 Score=51.38 Aligned_cols=19 Identities=42% Similarity=0.621 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|+|..
T Consensus 11 vG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 11 AGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp ECCTTSSHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHHCCC
Confidence 5999999999999999853
No 372
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.69 E-value=0.093 Score=48.72 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 14 vG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EECTTSSHHHHHHHHHHSC
T ss_pred ECCCCCcHHHHHHHHHcCC
Confidence 5999999999999999853
No 373
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.62 E-value=0.1 Score=51.35 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.|..
T Consensus 28 vG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 28 VGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EECTTSCHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999864
No 374
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.60 E-value=0.094 Score=48.40 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 13 ~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 375
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.58 E-value=0.11 Score=54.73 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|+|..
T Consensus 7 VG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 7 VGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp ECCSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999863
No 376
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.57 E-value=0.11 Score=49.06 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 15 ~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4899999999999999754
No 377
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.50 E-value=0.1 Score=49.84 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998743
No 378
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.48 E-value=0.12 Score=47.86 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.|++||||||+.+.|+..
T Consensus 12 ~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 379
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.44 E-value=0.1 Score=48.65 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 29 vG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EECTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 380
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.43 E-value=0.11 Score=48.12 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 27 ~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp ESSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999854
No 381
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.43 E-value=0.24 Score=46.34 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 31 vG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 31 VGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EESTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHhCc
Confidence 5999999999999999854
No 382
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.38 E-value=0.12 Score=49.72 Aligned_cols=18 Identities=22% Similarity=0.584 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 35 vG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 35 SGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp ECSTTSSHHHHHHHHTTT
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999885
No 383
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.38 E-value=0.12 Score=47.14 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998753
No 384
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.37 E-value=0.11 Score=52.59 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|+|..
T Consensus 30 vG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 30 VGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EECSSSSHHHHHHHHHTSC
T ss_pred EcCCCCCHHHHHHHHHCCC
Confidence 5999999999999999974
No 385
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=89.37 E-value=0.13 Score=50.76 Aligned_cols=19 Identities=47% Similarity=0.882 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||+++|++..
T Consensus 50 ~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 50 VGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp BCSSCSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 4999999999999999854
No 386
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.33 E-value=0.13 Score=51.84 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++||||||+.+.|+..
T Consensus 8 ~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 8 IGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999999863
No 387
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.29 E-value=0.11 Score=51.97 Aligned_cols=19 Identities=53% Similarity=0.763 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|.+|||||||+|.|+|..
T Consensus 9 vG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EECTTSSHHHHHHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 388
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.25 E-value=0.064 Score=51.10 Aligned_cols=19 Identities=47% Similarity=0.646 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|.|..
T Consensus 35 ~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 35 AGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EESCHHHHHHHHHHHTTCS
T ss_pred EcCCCCCHHHHHHHHhCCC
Confidence 5999999999999999974
No 389
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.25 E-value=0.13 Score=50.47 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.||+||||||+.+.|+..
T Consensus 35 ~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999999864
No 390
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.22 E-value=0.13 Score=46.82 Aligned_cols=19 Identities=42% Similarity=0.545 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 13 ~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 391
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.21 E-value=0.12 Score=47.86 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 23 ~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 23 CGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp ECCTTSCHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999854
No 392
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.20 E-value=0.1 Score=48.91 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+|++|+|||||++.+.+...
T Consensus 30 vG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EESTTSSHHHHHHHHHHSCC
T ss_pred ECCCCcCHHHHHHHHHhCCC
Confidence 59999999999999998653
No 393
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=89.20 E-value=0.1 Score=52.50 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=32.3
Q ss_pred HHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHh----------cCCeEEEEecCChhHHHh
Q 007344 123 ELIASP-SVIYADEPTTGLDAFQAEKVMEALRQLAQ----------DGHTVICSIHQPRGSVYF 175 (607)
Q Consensus 123 aL~~~p-~illLDEPtsGLD~~~~~~i~~~L~~la~----------~g~tvi~~~H~p~~~i~~ 175 (607)
++...| .++++||. ..|++.....+++.|.+-.- .+..+|++++.....+..
T Consensus 114 ~~~~~~~~vl~lDEi-~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~ 176 (311)
T 4fcw_A 114 AVRRRPYSVILFDAI-EKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILE 176 (311)
T ss_dssp HHHHCSSEEEEEETG-GGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHT
T ss_pred HHHhCCCeEEEEeCh-hhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHh
Confidence 333344 79999998 56788888888887766321 022366666664444433
No 394
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.17 E-value=0.12 Score=47.92 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 29 vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 395
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=89.17 E-value=0.12 Score=47.58 Aligned_cols=19 Identities=37% Similarity=0.606 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 21 ~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999864
No 396
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.16 E-value=0.12 Score=48.28 Aligned_cols=18 Identities=50% Similarity=0.877 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.|.
T Consensus 12 vG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 699999999999999973
No 397
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.16 E-value=0.13 Score=48.02 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 34 ~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 34 FGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp ECCTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999864
No 398
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.13 E-value=0.13 Score=47.76 Aligned_cols=19 Identities=47% Similarity=0.581 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 28 ~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 5999999999999999753
No 399
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.13 E-value=0.22 Score=51.94 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=64.8
Q ss_pred CCCCCCcHHHHHHHHHcCcCCCCCCccc----eEEEEC----CeeCCC--c-cceEEEEccCCCCCCCCCHHHHHHHHHH
Q 007344 1 MGPSGSGKTTLLNVLAGQLMASPRLHLS----GLLEVN----GKPSSN--K-AYKFAYVRQEDLFFSQLTVRETLSLAAE 69 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~~~~~~~~----G~I~~~----G~~~~~--~-~~~i~yv~Q~~~l~~~lTV~E~l~~~~~ 69 (607)
+||||||||||+|+|+|+++++ + |+|.++ |.+... . ...+++++|+..++. .|+.||+.+..
T Consensus 176 vG~nGsGKSTLlk~L~gl~~~~-----~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~~-~t~~~nl~~~~- 248 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAVFNTT-----SAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDYA-VRHSHKIAFID- 248 (365)
T ss_dssp ECCTTSHHHHHHHHHHHHTTCE-----EECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHHH-HHHCSSEEEES-
T ss_pred ECCCCCCHHHHHHHHHHHhCCC-----cchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHH-HhccCCEEEEe-
Confidence 5999999999999999998876 5 776653 333211 0 123677776543322 34444432210
Q ss_pred ccCCCCCCHHHH-----------HHHHHHHHHHcCCCc-cccc---cccCCcCCCCCHHHHHHHHHHHHH---hh--CCC
Q 007344 70 LQLPEILSVEER-----------DEYVNSLLFKLGLVS-CADS---NVGDAKVRGISGGEKKRLSLACEL---IA--SPS 129 (607)
Q Consensus 70 ~~~~~~~~~~~~-----------~~~v~~~l~~lgL~~-~~d~---~vg~~~~~~LSGGerqRvsIa~aL---~~--~p~ 129 (607)
...... ...+...+...+..- ..|. +.. .....+|+||+||..|+++| .. +++
T Consensus 249 ------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~-~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ 321 (365)
T 1lw7_A 249 ------TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWV-DDGLRSLGSQKQRQQFQQLLKKLLDKYKVP 321 (365)
T ss_dssp ------SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC------------CCSHHHHHHHHHHHHHGGGCC
T ss_pred ------CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcc-cCCCcCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 010000 111223332222210 0010 110 01134899999999999999 77 899
Q ss_pred eEEEeCCC
Q 007344 130 VIYADEPT 137 (607)
Q Consensus 130 illLDEPt 137 (607)
++++|||+
T Consensus 322 ililde~~ 329 (365)
T 1lw7_A 322 YIEIESPS 329 (365)
T ss_dssp CEEEECSS
T ss_pred EEEeCCCC
Confidence 99999997
No 400
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.11 E-value=0.12 Score=47.75 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 22 ~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EESTTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999964
No 401
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.09 E-value=0.14 Score=48.49 Aligned_cols=19 Identities=42% Similarity=0.583 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 31 vG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp ESCTTSSHHHHHHHHHCSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999854
No 402
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.09 E-value=0.13 Score=52.34 Aligned_cols=19 Identities=47% Similarity=0.669 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|.|..
T Consensus 16 vG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 16 VGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp ECSTTSSHHHHHHHHHTSC
T ss_pred ECCCCCcHHHHHHHHhCCC
Confidence 5999999999999999964
No 403
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.02 E-value=0.11 Score=49.45 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|++..
T Consensus 36 ~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 36 MGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EECTTSCHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 5999999999999998753
No 404
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.98 E-value=0.12 Score=48.49 Aligned_cols=19 Identities=32% Similarity=0.636 Sum_probs=16.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 31 ~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EESTTSSHHHHHHHHHC--
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999998753
No 405
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=88.97 E-value=0.16 Score=50.39 Aligned_cols=19 Identities=42% Similarity=0.517 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 10 ~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4999999999999999754
No 406
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.95 E-value=0.094 Score=48.60 Aligned_cols=19 Identities=42% Similarity=0.560 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 27 ~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 27 LGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EECTTSSHHHHHHHTSCGG
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999865
No 407
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.95 E-value=0.13 Score=48.32 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 26 ~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp ECSTTSSHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999754
No 408
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.94 E-value=0.11 Score=48.19 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 29 ~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EESTTSSHHHHHHHHHHHT
T ss_pred ECCCCcCHHHHHHHHhcCC
Confidence 5999999999999999854
No 409
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.89 E-value=0.13 Score=48.11 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 34 ~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp ESSTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999999864
No 410
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=88.88 E-value=0.13 Score=47.99 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.7
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+|++|+|||||++.+.|...
T Consensus 26 vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 26 MGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EESTTSSHHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHhcCC
Confidence 59999999999999998654
No 411
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.85 E-value=0.11 Score=47.80 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 27 ~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 27 VGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEETTSSHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999999985
No 412
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.78 E-value=0.15 Score=47.52 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 26 ~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 26 VGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp ECSTTSSHHHHHHHHHC--
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999999754
No 413
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.66 E-value=0.13 Score=46.87 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
.||+|+|||||++.++....
T Consensus 49 ~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp ESCGGGCHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 49999999999999988653
No 414
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.60 E-value=0.11 Score=47.28 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 13 vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp ECCGGGCHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999998753
No 415
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=88.43 E-value=0.18 Score=47.72 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=29.5
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCCh
Q 007344 126 ASPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPR 170 (607)
Q Consensus 126 ~~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~ 170 (607)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7777776666665432 23557888887754
No 416
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=88.39 E-value=0.15 Score=48.16 Aligned_cols=19 Identities=37% Similarity=0.356 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 13 vG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999998754
No 417
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.35 E-value=0.13 Score=48.51 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 31 vG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 31 VGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EECTTSSHHHHHHHHHHSS
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999854
No 418
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=88.32 E-value=0.13 Score=51.46 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|.+|+|||||+|.|.|..
T Consensus 32 vG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 32 VGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEBTTSCHHHHHHHHHTSC
T ss_pred EeCCCCCHHHHHHHHHCCC
Confidence 5999999999999999975
No 419
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.29 E-value=0.33 Score=46.33 Aligned_cols=71 Identities=18% Similarity=0.113 Sum_probs=52.8
Q ss_pred HHHHHHHHHHh--hCCCeEEEeCCCC--CCCHHHHHHHHHHHHHHHhcCCeEEEEecCChhHHHhhhcceeeecCC
Q 007344 115 KKRLSLACELI--ASPSVIYADEPTT--GLDAFQAEKVMEALRQLAQDGHTVICSIHQPRGSVYFKFDDIVLLTEG 186 (607)
Q Consensus 115 rqRvsIa~aL~--~~p~illLDEPts--GLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G 186 (607)
+..+.-++..+ .+.++++|||.+. .++-....++++.|.+ +-++..||+|...+..++.+.+|-|.-|..-
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~-Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh-CcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 44555666667 5679999999976 2333444567777754 2346899999999999999999999988653
No 420
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.23 E-value=0.16 Score=50.65 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=18.0
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+|.+|+|||||+|.|.|...
T Consensus 105 vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 105 VGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp EESTTSSHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHhcccc
Confidence 59999999999999999754
No 421
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=88.16 E-value=0.15 Score=50.79 Aligned_cols=19 Identities=37% Similarity=0.711 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|.|..
T Consensus 45 vG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 45 MGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EESTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999864
No 422
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.14 E-value=0.17 Score=47.97 Aligned_cols=18 Identities=33% Similarity=0.654 Sum_probs=16.2
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.|++||||||+.+.|+..
T Consensus 18 tG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 18 TGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999999864
No 423
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=88.09 E-value=0.15 Score=48.41 Aligned_cols=19 Identities=47% Similarity=0.700 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 40 vG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 40 VGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EECTTSSHHHHHHHHHC--
T ss_pred ECcCCCCHHHHHHHHHcCC
Confidence 5999999999999999753
No 424
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.02 E-value=0.11 Score=47.62 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=5.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 14 ~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp ECCCCC-------------
T ss_pred ECCCCCCHHHHHHHHHhCC
Confidence 5999999999999998653
No 425
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.92 E-value=0.16 Score=48.78 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 11 ~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998754
No 426
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=87.91 E-value=0.14 Score=48.53 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 34 vG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 34 VGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 427
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.89 E-value=0.2 Score=49.23 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.|++||||||+.+.|+..+
T Consensus 28 ~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 428
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.87 E-value=0.18 Score=48.83 Aligned_cols=19 Identities=42% Similarity=0.683 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 22 ~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999998753
No 429
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.85 E-value=0.16 Score=50.31 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.|..
T Consensus 42 vG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 42 LGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EECTTSSHHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999965
No 430
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=87.78 E-value=0.11 Score=48.59 Aligned_cols=18 Identities=22% Similarity=0.600 Sum_probs=0.7
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 26 ~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 26 VGEATVGKSALISMFTSK 43 (208)
T ss_dssp C-----------------
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 699999999999999876
No 431
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.61 E-value=0.19 Score=48.21 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||+||||+|..+.|+..+
T Consensus 6 ~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 6 LGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999999743
No 432
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.55 E-value=0.15 Score=47.57 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=16.1
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 35 ~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 35 VGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EESTTSSHHHHHHHHCSS
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 599999999999999764
No 433
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.20 E-value=0.21 Score=51.04 Aligned_cols=43 Identities=9% Similarity=0.031 Sum_probs=31.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCChh
Q 007344 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQPRG 171 (607)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p~~ 171 (607)
+++++++|| ...+++.....+.+.+.+... ...+|++++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhh
Confidence 567999999 788999888888887776533 3356667776643
No 434
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=87.15 E-value=0.11 Score=52.62 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=13.2
Q ss_pred CCCCCcHHHHHHHHHcCc
Q 007344 2 GPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~ 19 (607)
||+||||||+.+.|+..+
T Consensus 12 G~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 12 GSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCC---CCTHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998743
No 435
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.99 E-value=0.18 Score=46.77 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 24 ~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EECTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999999763
No 436
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.92 E-value=0.81 Score=52.47 Aligned_cols=19 Identities=47% Similarity=0.844 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||+|.++|+...
T Consensus 527 ~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 527 LGPTGVGKTELARALAESI 545 (758)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999865
No 437
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.86 E-value=1 Score=56.81 Aligned_cols=71 Identities=18% Similarity=0.119 Sum_probs=46.3
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---H-hcCCeEEEEecCChh------
Q 007344 117 RLSLACELI--ASPSVIYADEPTTGLD-A------------FQAEKVMEALRQL---A-QDGHTVICSIHQPRG------ 171 (607)
Q Consensus 117 RvsIa~aL~--~~p~illLDEPtsGLD-~------------~~~~~i~~~L~~l---a-~~g~tvi~~~H~p~~------ 171 (607)
-+.+++.++ .+|+++++|.-++=.. + ..+..+.+.|++| + +.|.+||++.|--..
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 345566665 4799999999876552 1 1234456666666 3 568899998874211
Q ss_pred ---------HHHhhhcceeeecCCe
Q 007344 172 ---------SVYFKFDDIVLLTEGK 187 (607)
Q Consensus 172 ---------~i~~~~D~v~lL~~G~ 187 (607)
.+...+|-++.|+...
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~ 553 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIG 553 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEecc
Confidence 3667789888886544
No 438
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=86.85 E-value=0.1 Score=49.48 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.|.+..
T Consensus 17 vG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 17 IGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp ECCTTSSHHHHHCBCTTCS
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998653
No 439
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.79 E-value=0.22 Score=50.10 Aligned_cols=17 Identities=41% Similarity=0.599 Sum_probs=15.5
Q ss_pred CCCCCCcHHHHHHHHHc
Q 007344 1 MGPSGSGKTTLLNVLAG 17 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG 17 (607)
.|++||||||+.+.|+.
T Consensus 81 ~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 81 TGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EECTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999999983
No 440
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.79 E-value=0.26 Score=46.04 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=27.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCC
Q 007344 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169 (607)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p 169 (607)
++.++++||. ..+++.....+.+.+.+. ..+..+|++++.+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 6789999995 456776666666666553 2344667777665
No 441
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=86.72 E-value=0.24 Score=47.50 Aligned_cols=18 Identities=50% Similarity=0.877 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.|.
T Consensus 43 vG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp ECCTTSSHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 699999999999999974
No 442
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=86.58 E-value=0.22 Score=47.56 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 19 ~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp ESCTTSSHHHHHHHHHHCC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999999864
No 443
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.57 E-value=0.24 Score=48.02 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||+||||+|..+.|+-.+
T Consensus 35 lGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 35 LGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp ECCTTCCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999999998643
No 444
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=86.17 E-value=0.14 Score=47.17 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 28 ~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 28 LGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEETTSSHHHHHHHTCCS
T ss_pred ECCCCCCHHHHHHHHHcC
Confidence 599999999999999653
No 445
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.10 E-value=0.26 Score=50.79 Aligned_cols=19 Identities=53% Similarity=0.788 Sum_probs=17.3
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||+|||||||.+.|+..+
T Consensus 11 ~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 11 MGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 5999999999999999864
No 446
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.08 E-value=0.3 Score=47.14 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=17.8
Q ss_pred CCCCCcHHHHHHHHHcCcCC
Q 007344 2 GPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~~~ 21 (607)
|++||||||+.+.|+..+..
T Consensus 13 G~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 13 GPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CSTTSSHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887654
No 447
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=86.07 E-value=0.57 Score=44.00 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 36 vG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 36 VGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHHhCC
Confidence 5999999999999998643
No 448
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=86.00 E-value=0.21 Score=47.65 Aligned_cols=19 Identities=53% Similarity=0.758 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|.+|+|||||++.+++..
T Consensus 44 vG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHh
Confidence 5999999999999998753
No 449
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=85.99 E-value=0.21 Score=46.88 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 35 vG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 35 VGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EECTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhhCC
Confidence 5999999999999998753
No 450
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=85.82 E-value=0.26 Score=46.96 Aligned_cols=19 Identities=42% Similarity=0.599 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 33 vG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 33 VGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSC
T ss_pred ECcCCCCHHHHHHHHhcCC
Confidence 5999999999999998753
No 451
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.60 E-value=0.26 Score=52.57 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++||||||+.+.|+..
T Consensus 264 ~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp ESCTTSSHHHHHHHHTGG
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999864
No 452
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=85.50 E-value=0.32 Score=48.12 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.||+|+|||||.++|+..
T Consensus 70 ~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 399999999999999985
No 453
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.44 E-value=0.42 Score=49.54 Aligned_cols=19 Identities=42% Similarity=0.670 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||+|||||||...|+..+
T Consensus 46 ~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 46 MGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp ECSTTSSHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHHHC
Confidence 5999999999999999865
No 454
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.43 E-value=0.28 Score=47.09 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=16.5
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+||+|+|||||...|+.+
T Consensus 40 ~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 40 TGDSGVGKSETALELVQR 57 (205)
T ss_dssp ECCCTTTTHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999999875
No 455
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=85.41 E-value=0.32 Score=52.87 Aligned_cols=19 Identities=53% Similarity=0.739 Sum_probs=15.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|+|..
T Consensus 239 vG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 239 AGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp ECCTTSSHHHHHHHCC---
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999863
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.35 E-value=0.29 Score=47.63 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=16.6
Q ss_pred CCCCCcHHHHHHHHHcCc
Q 007344 2 GPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~ 19 (607)
|+.||||||+.+.|+..+
T Consensus 9 G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 9 GNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp ECTTSSHHHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHc
Confidence 899999999999999865
No 457
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.29 E-value=0.29 Score=50.74 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||+|||||||.+.|+..+
T Consensus 13 ~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 13 VGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCcCcHHHHHHHHHHHc
Confidence 4999999999999999864
No 458
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=85.13 E-value=0.25 Score=46.57 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.8
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||++.+.+..
T Consensus 15 ~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EESTTSSHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHhcCC
Confidence 5999999999999998754
No 459
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=84.98 E-value=0.32 Score=46.22 Aligned_cols=19 Identities=37% Similarity=0.674 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 9 ~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 9 DGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp ECCTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999999998853
No 460
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.90 E-value=0.31 Score=49.24 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=16.7
Q ss_pred CCCCCcHHHHHHHHHcCc
Q 007344 2 GPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~ 19 (607)
||+|+|||+|.++|+...
T Consensus 43 GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 43 GGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp ECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999999864
No 461
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=84.88 E-value=0.26 Score=53.12 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHHhcCCeEEEEecC
Q 007344 114 EKKRLSLACELIASPSVIYADEP-TTGLDAFQAEKVMEALRQLAQDGHTVICSIHQ 168 (607)
Q Consensus 114 erqRvsIa~aL~~~p~illLDEP-tsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~ 168 (607)
+.+....+...+.+++++++... +.|+.... ..+.+.+ .+.++.+|++.+.
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l---~~~~~pvilV~NK 140 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKIL---YRTKKPVVLAVNK 140 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHH---TTCCSCEEEEEEC
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHH---HHcCCCEEEEEEC
Confidence 56666677777778887665544 44565544 3444444 3467888877765
No 462
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.86 E-value=0.32 Score=52.16 Aligned_cols=68 Identities=22% Similarity=0.296 Sum_probs=40.8
Q ss_pred HHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHH----hcCCeEEEEecCChhHHHhhhcceeeecCCe-
Q 007344 123 ELIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGK- 187 (607)
Q Consensus 123 aL~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~- 187 (607)
|-...|.|+|+||--+ +=+......+..+|..+- ..+..||.+|..|.. .|.- ++..||
T Consensus 270 A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~-----LD~A-llRpGRf 343 (434)
T 4b4t_M 270 AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV-----LDPA-LLRSGRL 343 (434)
T ss_dssp HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC-----CCTT-TCSTTSE
T ss_pred HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh-----cCHh-HhcCCce
Confidence 3345799999999521 223344445556666663 235578889988742 2432 345565
Q ss_pred --eeeeCCCCC
Q 007344 188 --LVYAGPARD 196 (607)
Q Consensus 188 --iv~~G~~~~ 196 (607)
.++.+.|+.
T Consensus 344 D~~I~i~lPd~ 354 (434)
T 4b4t_M 344 DRKIEFPLPSE 354 (434)
T ss_dssp EEEEECCCCCH
T ss_pred eEEEEeCCcCH
Confidence 477787765
No 463
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=85.16 E-value=0.18 Score=47.30 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.9
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 36 ~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 36 VGDGAVGKTCLLISYTTN 53 (204)
Confidence 699999999999988753
No 464
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.68 E-value=0.33 Score=51.99 Aligned_cols=46 Identities=28% Similarity=0.390 Sum_probs=30.2
Q ss_pred hhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hcCCeEEEEecCCh
Q 007344 125 IASPSVIYADEP----------TTGLDAFQAEKVMEALRQLA----QDGHTVICSIHQPR 170 (607)
Q Consensus 125 ~~~p~illLDEP----------tsGLD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~ 170 (607)
-..|.|+++||- .++-|......+.++|..+- ..|..||++|+.|.
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred HcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 346899999996 23334455555666666664 23567889998874
No 465
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=84.42 E-value=0.3 Score=49.22 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=17.4
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|.+|+|||||+|.|.|..
T Consensus 126 vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 126 IGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp EESTTSSHHHHHHHHHTSC
T ss_pred EecCCCchHHHHHHHhcCc
Confidence 5999999999999999965
No 466
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.37 E-value=0.39 Score=47.94 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||.+.|+...
T Consensus 56 ~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999865
No 467
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.35 E-value=0.35 Score=51.35 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=40.3
Q ss_pred hhCCCeEEEeCCCCC----------CCHHHHHHHHHHHHHHH----hcCCeEEEEecCChhHHHhhhcceeeecCCe---
Q 007344 125 IASPSVIYADEPTTG----------LDAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGK--- 187 (607)
Q Consensus 125 ~~~p~illLDEPtsG----------LD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~--- 187 (607)
-..|.|+|+||--+- =|......+.++|..+- ..+..||.+|..|.. .|.-+ +.-||
T Consensus 239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~-----LDpAl-lRpGRfD~ 312 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI-----LDPAL-LRPGRIDR 312 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS-----SCHHH-HSTTSSCC
T ss_pred HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh-----CCHhH-cCCCcCce
Confidence 456999999996542 23344455666776664 234578889988742 24332 34454
Q ss_pred eeeeCCCCC
Q 007344 188 LVYAGPARD 196 (607)
Q Consensus 188 iv~~G~~~~ 196 (607)
.++.+.|+.
T Consensus 313 ~I~i~lPd~ 321 (405)
T 4b4t_J 313 KIEFPPPSV 321 (405)
T ss_dssp EEECCCCCH
T ss_pred EEEcCCcCH
Confidence 567777765
No 468
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.29 E-value=0.24 Score=49.00 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=16.5
Q ss_pred CCCCCcHHHHHHHHHcCc
Q 007344 2 GPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~ 19 (607)
|+.||||||+.+.|+..+
T Consensus 31 G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 31 GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CSTTSSHHHHHTTTGGGC
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998765
No 469
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=84.27 E-value=0.29 Score=47.81 Aligned_cols=19 Identities=42% Similarity=0.602 Sum_probs=14.2
Q ss_pred CCCCCcHHHHHHHHHcCcC
Q 007344 2 GPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~~ 20 (607)
|++||||||+.+.|+..+.
T Consensus 32 G~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 32 GIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCC---CHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999988663
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.16 E-value=0.37 Score=49.42 Aligned_cols=19 Identities=42% Similarity=0.632 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||+|||||||.+.|+-..
T Consensus 9 ~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 9 VGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp ECCTTSCHHHHHHHHHHTT
T ss_pred ECCCcCCHHHHHHHHHHhC
Confidence 4999999999999999764
No 471
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.09 E-value=0.36 Score=51.78 Aligned_cols=68 Identities=25% Similarity=0.371 Sum_probs=43.8
Q ss_pred HHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHH----hcCCeEEEEecCChhHHHhhhcceeeecCCee
Q 007344 123 ELIASPSVIYADEPTT----------GLDAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEGKL 188 (607)
Q Consensus 123 aL~~~p~illLDEPts----------GLD~~~~~~i~~~L~~la----~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G~i 188 (607)
|-...|.|+|+||--+ +-|......+..+|..+- ..+..||.+|.+|. ..|.- ++..||+
T Consensus 270 A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~-----~LDpA-llRpGRf 343 (437)
T 4b4t_L 270 AKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD-----TLDPA-LLRPGRL 343 (437)
T ss_dssp HHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT-----SSCTT-TTSTTSE
T ss_pred HHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch-----hhCHH-HhCCCcc
Confidence 3446799999999843 234445555666777764 23567899999874 23543 3566754
Q ss_pred ---eeeCCCCC
Q 007344 189 ---VYAGPARD 196 (607)
Q Consensus 189 ---v~~G~~~~ 196 (607)
++.+.|+.
T Consensus 344 D~~I~i~lPd~ 354 (437)
T 4b4t_L 344 DRKVEIPLPNE 354 (437)
T ss_dssp EEEECCCCCCH
T ss_pred ceeeecCCcCH
Confidence 77777765
No 472
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.99 E-value=0.35 Score=47.44 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.7
Q ss_pred CCCCCcHHHHHHHHHcCcCC
Q 007344 2 GPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~~~ 21 (607)
|++||||||+.+.|+..+..
T Consensus 34 G~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 34 GLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp ESTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999987643
No 473
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.98 E-value=0.4 Score=48.93 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||+|.++++...
T Consensus 57 ~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 57 YGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp ECSSSSCHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 3999999999999999853
No 474
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.67 E-value=0.38 Score=46.39 Aligned_cols=20 Identities=45% Similarity=0.562 Sum_probs=17.8
Q ss_pred CCCCCcHHHHHHHHHcCcCC
Q 007344 2 GPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~~~ 21 (607)
|++||||||+.+.|+..+..
T Consensus 10 G~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 10 GLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp ECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999987653
No 475
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.64 E-value=1.8 Score=53.92 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=44.9
Q ss_pred HHHHHHh--hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHHH---H-hcCCeEEEEecCCh---------
Q 007344 119 SLACELI--ASPSVIYADEPTTGLDA-------------FQAEKVMEALRQL---A-QDGHTVICSIHQPR--------- 170 (607)
Q Consensus 119 sIa~aL~--~~p~illLDEPtsGLD~-------------~~~~~i~~~L~~l---a-~~g~tvi~~~H~p~--------- 170 (607)
.+++.++ .+|+++++|..++=... ..++.+.+.+++| + +.|.+||++.|-..
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4455554 47999999999876541 1233445555555 3 56899999987421
Q ss_pred ------hHHHhhhcceeeecCCe
Q 007344 171 ------GSVYFKFDDIVLLTEGK 187 (607)
Q Consensus 171 ------~~i~~~~D~v~lL~~G~ 187 (607)
..+...+|-++.+...+
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccCCCCcceeeeCCEEEEEEecc
Confidence 24667789888876543
No 476
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.45 E-value=0.47 Score=45.40 Aligned_cols=19 Identities=53% Similarity=0.873 Sum_probs=17.3
Q ss_pred CCCCCcHHHHHHHHHcCcC
Q 007344 2 GPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~~ 20 (607)
|+-||||||+.+.|+..+.
T Consensus 9 G~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 9 GPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHH
Confidence 8999999999999998764
No 477
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.31 E-value=0.41 Score=49.00 Aligned_cols=19 Identities=53% Similarity=0.669 Sum_probs=17.0
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||+|||||||...|+...
T Consensus 16 ~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 16 MGPTASGKTALAIELRKIL 34 (316)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECCCccCHHHHHHHHHHhC
Confidence 4999999999999999754
No 478
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.30 E-value=0.39 Score=45.05 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
.|+||+|||||...|..+
T Consensus 22 ~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 22 TGEANIGKSELSLALIDR 39 (181)
T ss_dssp EESSSSSHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHc
Confidence 489999999999988763
No 479
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=83.26 E-value=0.47 Score=46.17 Aligned_cols=19 Identities=53% Similarity=0.595 Sum_probs=17.2
Q ss_pred CCCCCcHHHHHHHHHcCcC
Q 007344 2 GPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~~ 20 (607)
|++||||||+.+.|+..+.
T Consensus 28 G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 28 GIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998664
No 480
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=83.17 E-value=0.43 Score=48.47 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=16.6
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|++|+|||||++.+.+.
T Consensus 9 vG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 9 MGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp ECCTTSSHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHhC
Confidence 699999999999998876
No 481
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=83.03 E-value=0.39 Score=50.76 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+||+|+|||||++.|++..
T Consensus 180 vG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 180 VAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp ECCSSSSHHHHHHHHHHHH
T ss_pred ecCCCCChhHHHHHHHHHH
Confidence 5999999999999999865
No 482
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=82.79 E-value=0.43 Score=46.20 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=17.9
Q ss_pred CCCCCcHHHHHHHHHcCcCC
Q 007344 2 GPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~~~ 21 (607)
|++||||||+.+.|+..+..
T Consensus 12 G~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 12 GLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp ECSSSSHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHhcc
Confidence 89999999999999987643
No 483
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=82.78 E-value=0.29 Score=50.75 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|.+|+|||||+|.|.|..
T Consensus 37 vG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 37 VGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp ECBTTSSHHHHHHTTTTSC
T ss_pred ECCCCCCHHHHHHHHhCCC
Confidence 5999999999999999964
No 484
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=82.72 E-value=0.36 Score=49.46 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=16.4
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|+||+|||||...|.++
T Consensus 150 ~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 150 TGDSGIGKSETALELIKR 167 (314)
T ss_dssp EESTTSSHHHHHHHHHHT
T ss_pred EeCCCCCHHHHHHHHHhc
Confidence 499999999999999885
No 485
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=82.37 E-value=0.47 Score=51.10 Aligned_cols=19 Identities=53% Similarity=0.788 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||.++|+...
T Consensus 56 ~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 56 WGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 3999999999999999864
No 486
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.19 E-value=0.55 Score=44.53 Aligned_cols=20 Identities=45% Similarity=0.602 Sum_probs=17.6
Q ss_pred CCCCCcHHHHHHHHHcCcCC
Q 007344 2 GPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 2 GpsGsGKSTLL~~LaG~~~~ 21 (607)
|+-||||||..+.|+..+..
T Consensus 7 G~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999987643
No 487
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=82.12 E-value=0.42 Score=50.64 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCccccccccCCcCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 007344 84 YVNSLLFKLGLVSCADSNVGDAKVRGISGGEKKRLSLACELIASPSVIYA 133 (607)
Q Consensus 84 ~v~~~l~~lgL~~~~d~~vg~~~~~~LSGGerqRvsIa~aL~~~p~illL 133 (607)
.++++++.++.... ...+|.+|.+++.-..-+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 46677777766321 236899998888777777778998887
No 488
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=82.10 E-value=0.46 Score=55.07 Aligned_cols=19 Identities=42% Similarity=0.730 Sum_probs=17.6
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||||+|||||.++|++..
T Consensus 517 ~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 517 YGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp BCCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999999999975
No 489
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.09 E-value=0.53 Score=47.95 Aligned_cols=19 Identities=47% Similarity=0.830 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||++.|+...
T Consensus 61 ~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 61 SGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECcCCCCHHHHHHHHHHHh
Confidence 3999999999999998864
No 490
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=82.02 E-value=0.45 Score=49.81 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=16.9
Q ss_pred CCCCCCcHHHHHHHHHcC
Q 007344 1 MGPSGSGKTTLLNVLAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~ 18 (607)
+|.+|+|||||+|.|.|.
T Consensus 168 vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 168 VGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCchHHHHHHHHhh
Confidence 599999999999999986
No 491
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=81.96 E-value=0.54 Score=48.68 Aligned_cols=19 Identities=58% Similarity=0.868 Sum_probs=17.2
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+||||+.++|+...
T Consensus 57 ~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 57 IGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp ECCTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4999999999999999864
No 492
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=81.80 E-value=0.4 Score=51.91 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++|+|||||+|.|+|..
T Consensus 230 vG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 230 VGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHhCCC
Confidence 5999999999999999853
No 493
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=81.72 E-value=0.53 Score=46.06 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
+|++||||||+.+.|+..+
T Consensus 14 ~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 14 LGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999999998753
No 494
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=81.70 E-value=0.47 Score=49.26 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.5
Q ss_pred CCCCCCcHHHHHHHHHcCcC
Q 007344 1 MGPSGSGKTTLLNVLAGQLM 20 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~ 20 (607)
+|++|+|||||++.|++.+.
T Consensus 85 ~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 85 TGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp ECCTTSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 59999999999999988653
No 495
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.61 E-value=0.52 Score=50.83 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=40.2
Q ss_pred HHhhCCCeEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hcCCeEEEEecCChhHHHhhhcceeeecCC--
Q 007344 123 ELIASPSVIYADEPTTGL----------DAFQAEKVMEALRQLA----QDGHTVICSIHQPRGSVYFKFDDIVLLTEG-- 186 (607)
Q Consensus 123 aL~~~p~illLDEPtsGL----------D~~~~~~i~~~L~~la----~~g~tvi~~~H~p~~~i~~~~D~v~lL~~G-- 186 (607)
|-...|.|+|+||--+-. +......+..+|.++- ..+..||.+|..|.. .|.- ++.-|
T Consensus 298 Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~-----LDpA-LlRpGRF 371 (467)
T 4b4t_H 298 ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT-----LDPA-LLRPGRI 371 (467)
T ss_dssp HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS-----BCHH-HHSTTTC
T ss_pred HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc-----CChh-hhccccc
Confidence 445679999999986432 3334445566666663 234567888887742 2433 23334
Q ss_pred -eeeeeCCCCC
Q 007344 187 -KLVYAGPARD 196 (607)
Q Consensus 187 -~iv~~G~~~~ 196 (607)
+.++.+.|+.
T Consensus 372 D~~I~i~lPd~ 382 (467)
T 4b4t_H 372 DRKVEFSLPDL 382 (467)
T ss_dssp CEEECCCCCCH
T ss_pred cEEEEeCCcCH
Confidence 3567777654
No 496
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=81.34 E-value=0.31 Score=46.29 Aligned_cols=18 Identities=44% Similarity=0.857 Sum_probs=15.5
Q ss_pred CCCCCCcHHHHHHH-HHcC
Q 007344 1 MGPSGSGKTTLLNV-LAGQ 18 (607)
Q Consensus 1 lGpsGsGKSTLL~~-LaG~ 18 (607)
+|++|+|||||++. +.|.
T Consensus 21 ~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 21 VGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EECTTSSHHHHHTTBHHHH
T ss_pred ECCCCCCHHHHHHHHHcCC
Confidence 59999999999998 6554
No 497
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=81.13 E-value=0.49 Score=50.84 Aligned_cols=21 Identities=43% Similarity=0.613 Sum_probs=18.6
Q ss_pred CCCCCCcHHHHHHHHHcCcCC
Q 007344 1 MGPSGSGKTTLLNVLAGQLMA 21 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~~~ 21 (607)
.||+|+||||+.++|++.+..
T Consensus 56 ~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 56 IGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp ECCTTSSHHHHHHHHHHHTTC
T ss_pred EcCCCCCHHHHHHHHHHHcCC
Confidence 499999999999999998743
No 498
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=81.02 E-value=2.6 Score=40.87 Aligned_cols=53 Identities=32% Similarity=0.360 Sum_probs=43.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEec---------CChhHHHhhhcceeeec
Q 007344 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIH---------QPRGSVYFKFDDIVLLT 184 (607)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H---------~p~~~i~~~~D~v~lL~ 184 (607)
+++++++||--. |+. ++++.++.+++.|.+||++-| .+...+..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 553 466677788877999999999 67778888999999985
No 499
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=80.93 E-value=0.32 Score=43.37 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=29.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEecCC
Q 007344 127 SPSVIYADEPTTGLDAFQAEKVMEALRQLAQDGHTVICSIHQP 169 (607)
Q Consensus 127 ~p~illLDEPtsGLD~~~~~~i~~~L~~la~~g~tvi~~~H~p 169 (607)
+..++++||.- .|+......+.+.+.+..+.+..+|+++..+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999965 5788888888887776544455677777654
No 500
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=80.87 E-value=0.62 Score=48.35 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=17.1
Q ss_pred CCCCCCcHHHHHHHHHcCc
Q 007344 1 MGPSGSGKTTLLNVLAGQL 19 (607)
Q Consensus 1 lGpsGsGKSTLL~~LaG~~ 19 (607)
.||+|+|||||.++|+...
T Consensus 90 ~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 90 YGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 3999999999999999854
Done!