Query 007345
Match_columns 607
No_of_seqs 38 out of 40
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 22:19:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15337 Vasculin: Vascular pr 95.9 0.011 2.3E-07 53.2 4.4 34 541-574 10-46 (97)
2 PF10231 DUF2315: Uncharacteri 83.6 1.7 3.7E-05 40.8 4.5 36 541-576 56-91 (126)
3 PF04695 Pex14_N: Peroxisomal 63.6 7 0.00015 36.4 3.1 31 535-575 18-48 (136)
4 PF13145 Rotamase_2: PPIC-type 42.2 18 0.00039 30.1 2.0 14 563-576 2-15 (121)
5 cd07922 CarBa CarBa is the A s 38.1 15 0.00032 32.4 0.9 28 545-572 8-46 (81)
6 PF15336 Auts2: Autism suscept 34.6 13 0.00028 38.1 -0.1 8 93-100 180-187 (212)
7 PF15347 PAG: Phosphoprotein a 31.1 39 0.00086 37.5 2.9 37 557-593 304-341 (428)
8 PF06627 DUF1153: Protein of u 30.8 28 0.00061 31.6 1.4 23 558-581 57-79 (90)
9 PF01595 DUF21: Domain of unkn 29.2 83 0.0018 29.0 4.3 33 546-580 147-179 (183)
10 KOG4779 Predicted membrane pro 28.3 93 0.002 27.7 4.1 30 542-571 23-56 (82)
11 KOG0132 RNA polymerase II C-te 27.5 77 0.0017 38.1 4.5 17 9-25 739-755 (894)
12 PF07735 FBA_2: F-box associat 25.1 68 0.0015 25.6 2.6 28 558-586 40-67 (70)
13 COG2852 Very-short-patch-repai 25.0 37 0.0008 32.6 1.2 36 540-575 83-124 (129)
14 PF08671 SinI: Anti-repressor 24.4 67 0.0015 23.9 2.2 16 559-574 14-29 (30)
15 KOG0147 Transcriptional coacti 24.2 68 0.0015 37.0 3.2 10 108-117 112-121 (549)
16 PF11867 DUF3387: Domain of un 23.6 60 0.0013 34.1 2.6 31 545-576 226-256 (335)
17 KOG0132 RNA polymerase II C-te 21.9 39 0.00085 40.4 0.9 8 100-107 784-791 (894)
18 PF12656 G-patch_2: DExH-box s 21.6 63 0.0014 28.0 1.9 15 543-557 33-47 (77)
19 PF03147 FDX-ACB: Ferredoxin-f 21.1 64 0.0014 27.9 1.8 25 558-583 65-89 (94)
20 KOG2629 Peroxisomal membrane a 21.0 1E+02 0.0022 33.3 3.6 29 535-573 17-45 (300)
21 cd03035 ArsC_Yffb Arsenate Red 20.3 1.1E+02 0.0023 27.3 3.1 30 544-573 16-47 (105)
No 1
>PF15337 Vasculin: Vascular protein family Vasculin-like 1
Probab=95.89 E-value=0.011 Score=53.24 Aligned_cols=34 Identities=38% Similarity=0.726 Sum_probs=28.8
Q ss_pred HHHHHHHHhhCCccCCCCCC---CCCHHHHHHHHHHH
Q 007345 541 DEEAAFLRSLGWEENSGEDE---GLTEEEIKAFYQEF 574 (607)
Q Consensus 541 eeE~afLrSLGWee~~~~~e---~lTeEEi~af~~~~ 574 (607)
|-|-..||..||.|..+.|| +|||+|+++|.-+-
T Consensus 10 EaEhRLLk~MGWqEy~eNde~~~PlTEDElkEF~~ks 46 (97)
T PF15337_consen 10 EAEHRLLKAMGWQEYPENDENCLPLTEDELKEFQVKS 46 (97)
T ss_pred HHHHHHHHHhcccccCcCCcccCcCcHHHHHHHHHHH
Confidence 77889999999999775555 89999999998653
No 2
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=83.56 E-value=1.7 Score=40.84 Aligned_cols=36 Identities=31% Similarity=0.611 Sum_probs=29.6
Q ss_pred HHHHHHHHhhCCccCCCCCCCCCHHHHHHHHHHHHh
Q 007345 541 DEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFEK 576 (607)
Q Consensus 541 eeE~afLrSLGWee~~~~~e~lTeEEi~af~~~~~k 576 (607)
+|-++||.+.+=....+..+.|++|||..||++|..
T Consensus 56 ~~K~~fi~~~~l~~~~g~~~~l~a~~mseFYk~FL~ 91 (126)
T PF10231_consen 56 KEKEEFIESRQLRKESGRKQELSADEMSEFYKEFLD 91 (126)
T ss_pred HHHHHHHHHhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 788899999855444456789999999999999875
No 3
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=63.59 E-value=7 Score=36.39 Aligned_cols=31 Identities=35% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHhhCCccCCCCCCCCCHHHHHHHHHHHH
Q 007345 535 YAAVDPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFE 575 (607)
Q Consensus 535 ~~~~~~eeE~afLrSLGWee~~~~~e~lTeEEi~af~~~~~ 575 (607)
....|.++-.+||++- |||+|||.+-+++..
T Consensus 18 V~~sp~~~k~~FL~sK----------GLt~~EI~~al~~a~ 48 (136)
T PF04695_consen 18 VRNSPLEKKIAFLESK----------GLTEEEIDEALGRAG 48 (136)
T ss_dssp CCCS-HHHHHHHHHHC----------T--HHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHcC----------CCCHHHHHHHHHhcC
Confidence 5556778999999986 699999998887765
No 4
>PF13145 Rotamase_2: PPIC-type PPIASE domain; PDB: 3NRK_A 2KGJ_A.
Probab=42.24 E-value=18 Score=30.07 Aligned_cols=14 Identities=50% Similarity=0.904 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHh
Q 007345 563 TEEEIKAFYQEFEK 576 (607)
Q Consensus 563 TeEEi~af~~~~~k 576 (607)
||+||.+||++++.
T Consensus 2 te~el~~yY~~n~~ 15 (121)
T PF13145_consen 2 TEEELRAYYEENKD 15 (121)
T ss_dssp -HHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHHH
Confidence 89999999999887
No 5
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=38.13 E-value=15 Score=32.41 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=19.2
Q ss_pred HHHHhhCCc--------cCCC---CCCCCCHHHHHHHHH
Q 007345 545 AFLRSLGWE--------ENSG---EDEGLTEEEIKAFYQ 572 (607)
Q Consensus 545 afLrSLGWe--------e~~~---~~e~lTeEEi~af~~ 572 (607)
.|+-.|+++ +|.+ +++|||+||+.+-..
T Consensus 8 rli~~L~~dp~~rerF~~DPea~~~~~gLt~eE~~aL~~ 46 (81)
T cd07922 8 RLIQELFKDPGLIERFQDDPSAVFEEYGLTPAERAALRE 46 (81)
T ss_pred HHHHHHhcCHHHHHHHHHCHHHHHHHcCCCHHHHHHHHc
Confidence 456666666 2332 678999999998654
No 6
>PF15336 Auts2: Autism susceptibility gene 2 protein
Probab=34.59 E-value=13 Score=38.08 Aligned_cols=8 Identities=63% Similarity=1.057 Sum_probs=3.3
Q ss_pred chhhhhhh
Q 007345 93 DKDRERDK 100 (607)
Q Consensus 93 DrdreRdk 100 (607)
|||||+||
T Consensus 180 dRdRe~ek 187 (212)
T PF15336_consen 180 DRDREPEK 187 (212)
T ss_pred cccccchh
Confidence 44444443
No 7
>PF15347 PAG: Phosphoprotein associated with glycosphingolipid-enriched
Probab=31.10 E-value=39 Score=37.51 Aligned_cols=37 Identities=38% Similarity=0.432 Sum_probs=26.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcccccccchhh-hccccc
Q 007345 557 GEDEGLTEEEIKAFYQEFEKRGMQLKLPQFH-ATSVVG 593 (607)
Q Consensus 557 ~~~e~lTeEEi~af~~~~~k~~m~~kls~~~-a~~l~g 593 (607)
+||-.||||||.|.|----|+|-..+-...| -+.+.+
T Consensus 304 eedPtLTeeeISAmYSsVnk~gq~~~~~~e~~Yt~i~~ 341 (428)
T PF15347_consen 304 EEDPTLTEEEISAMYSSVNKPGQSVEKDPESDYTSIQE 341 (428)
T ss_pred ccCCcccHHHHHHHHhhccCCccccccCccCccchhhh
Confidence 3778999999999999988888654333334 455555
No 8
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=30.75 E-value=28 Score=31.61 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHHHHHHHHhccccc
Q 007345 558 EDEGLTEEEIKAFYQEFEKRGMQL 581 (607)
Q Consensus 558 ~~e~lTeEEi~af~~~~~k~~m~~ 581 (607)
+-++||+|||..|.+.+. ++|..
T Consensus 57 ~rY~Ls~eEf~~W~~av~-rhge~ 79 (90)
T PF06627_consen 57 RRYGLSEEEFESWQRAVD-RHGEN 79 (90)
T ss_dssp HCTTSSHHHHHHHHHHCC-T--TT
T ss_pred HHhCCCHHHHHHHHHHHH-HHhHH
Confidence 678999999999999877 44443
No 9
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=29.16 E-value=83 Score=28.97 Aligned_cols=33 Identities=33% Similarity=0.582 Sum_probs=25.2
Q ss_pred HHHhhCCccCCCCCCCCCHHHHHHHHHHHHhcccc
Q 007345 546 FLRSLGWEENSGEDEGLTEEEIKAFYQEFEKRGMQ 580 (607)
Q Consensus 546 fLrSLGWee~~~~~e~lTeEEi~af~~~~~k~~m~ 580 (607)
++|-.|=++ ++++.+|||||++..++..+.|-.
T Consensus 147 ~~~~~~~~~--~~~~~~s~eel~~lv~~~~e~G~i 179 (183)
T PF01595_consen 147 ILKLFGIEN--EEDPAVSEEELRSLVEEGEEEGVI 179 (183)
T ss_pred HHHHhCCCc--cccCCCCHHHHHHHHHhHHHCCCC
Confidence 344455555 578899999999999999887743
No 10
>KOG4779 consensus Predicted membrane protein [Function unknown]
Probab=28.30 E-value=93 Score=27.71 Aligned_cols=30 Identities=27% Similarity=0.682 Sum_probs=19.5
Q ss_pred HHHHHHHhhCCccCC----CCCCCCCHHHHHHHH
Q 007345 542 EEAAFLRSLGWEENS----GEDEGLTEEEIKAFY 571 (607)
Q Consensus 542 eE~afLrSLGWee~~----~~~e~lTeEEi~af~ 571 (607)
-|..||+.+||..+. +||+.-+.-.|-...
T Consensus 23 sEeRFL~riGws~d~~~gFG~~q~tiKS~~~~LI 56 (82)
T KOG4779|consen 23 SEERFLKRIGWSTDQGIGFGEDQPTIKSQLMNLI 56 (82)
T ss_pred hHHHHHHHhCcCcccCcccCCCCccHHHHHHHHH
Confidence 366899999998776 355555544444333
No 11
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=27.53 E-value=77 Score=38.13 Aligned_cols=17 Identities=47% Similarity=1.062 Sum_probs=9.3
Q ss_pred hhhhhhccCCcccCCCC
Q 007345 9 VPQWLRNAGSVTGGGGS 25 (607)
Q Consensus 9 vPeWL~s~G~vtg~Gss 25 (607)
-|+|-+.+-.+.|+|+.
T Consensus 739 ~~~~~~~~~~~~~~~~~ 755 (894)
T KOG0132|consen 739 SPQWNREQRGMRGGGGA 755 (894)
T ss_pred CccccccccccCCCCCC
Confidence 36787755444444433
No 12
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=25.10 E-value=68 Score=25.64 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcccccccchh
Q 007345 558 EDEGLTEEEIKAFYQEFEKRGMQLKLPQF 586 (607)
Q Consensus 558 ~~e~lTeEEi~af~~~~~k~~m~~kls~~ 586 (607)
....+|.++|+.|.+..+ .|--++|-.|
T Consensus 40 ~~~~~t~~dln~Flk~W~-~G~~~~Le~l 67 (70)
T PF07735_consen 40 WNSKFTNEDLNKFLKHWI-NGSNPRLEYL 67 (70)
T ss_pred ECCCCCHHHHHHHHHHHH-cCCCcCCcEE
Confidence 346799999999999999 6766676544
No 13
>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]
Probab=24.96 E-value=37 Score=32.61 Aligned_cols=36 Identities=33% Similarity=0.342 Sum_probs=26.2
Q ss_pred CHHHHHHHHhhCCc----cCCC--CCCCCCHHHHHHHHHHHH
Q 007345 540 PDEEAAFLRSLGWE----ENSG--EDEGLTEEEIKAFYQEFE 575 (607)
Q Consensus 540 ~eeE~afLrSLGWe----e~~~--~~e~lTeEEi~af~~~~~ 575 (607)
|.|-.+||-++||+ -|++ -+..=+-|+|.++|++-.
T Consensus 83 Da~Rd~~L~~~G~~VLRf~N~ev~~n~~~vl~~I~~~l~~~~ 124 (129)
T COG2852 83 DAERDAFLESQGFTVLRFWNDEVLQNIDRVLEEILAVLEERR 124 (129)
T ss_pred hHHHHHHHHhCCceEEEeccHHHHhHHHHHHHHHHHHHHhcc
Confidence 48889999999998 3442 133445688999998754
No 14
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.38 E-value=67 Score=23.86 Aligned_cols=16 Identities=38% Similarity=0.663 Sum_probs=11.4
Q ss_pred CCCCCHHHHHHHHHHH
Q 007345 559 DEGLTEEEIKAFYQEF 574 (607)
Q Consensus 559 ~e~lTeEEi~af~~~~ 574 (607)
+-|||-|||+.|++-.
T Consensus 14 ~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 14 ESGLSKEEIREFLEFN 29 (30)
T ss_dssp HTT--HHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHhC
Confidence 4699999999998743
No 15
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=24.22 E-value=68 Score=36.96 Aligned_cols=10 Identities=40% Similarity=0.299 Sum_probs=6.1
Q ss_pred CCCCCCCCCC
Q 007345 108 LWDRDSSDPL 117 (607)
Q Consensus 108 ~~D~d~sd~~ 117 (607)
.||++.+|.-
T Consensus 112 srDr~~~~~~ 121 (549)
T KOG0147|consen 112 SRDRRRSDHS 121 (549)
T ss_pred hcccccCCcc
Confidence 5666666644
No 16
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=23.60 E-value=60 Score=34.14 Aligned_cols=31 Identities=42% Similarity=0.677 Sum_probs=20.9
Q ss_pred HHHHhhCCccCCCCCCCCCHHHHHHHHHHHHh
Q 007345 545 AFLRSLGWEENSGEDEGLTEEEIKAFYQEFEK 576 (607)
Q Consensus 545 afLrSLGWee~~~~~e~lTeEEi~af~~~~~k 576 (607)
+|.+.|-=++..++++||||||+ |||.-..+
T Consensus 226 ~la~el~~~~~r~~~~gLseeE~-AFyd~L~~ 256 (335)
T PF11867_consen 226 KLAKELREEEERAEELGLSEEEL-AFYDALAK 256 (335)
T ss_pred HHHHHHHHHHhcccccCCCHHHH-HHHHHHHc
Confidence 33444433344568899999998 89987664
No 17
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=21.87 E-value=39 Score=40.43 Aligned_cols=8 Identities=38% Similarity=1.111 Sum_probs=4.5
Q ss_pred hccccCCC
Q 007345 100 KERSSYGD 107 (607)
Q Consensus 100 kDR~s~~D 107 (607)
|||+.|+|
T Consensus 784 ~~Rer~G~ 791 (894)
T KOG0132|consen 784 RDRERYGN 791 (894)
T ss_pred hhhhhhcC
Confidence 44555665
No 18
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=21.59 E-value=63 Score=28.04 Aligned_cols=15 Identities=47% Similarity=1.035 Sum_probs=12.3
Q ss_pred HHHHHHhhCCccCCC
Q 007345 543 EAAFLRSLGWEENSG 557 (607)
Q Consensus 543 E~afLrSLGWee~~~ 557 (607)
=+|+||=+||.+..+
T Consensus 33 G~AlLRGMGW~~~~~ 47 (77)
T PF12656_consen 33 GAALLRGMGWKPGEG 47 (77)
T ss_pred HHHHHHHcCCCCCCC
Confidence 379999999996653
No 19
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=21.06 E-value=64 Score=27.86 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=16.3
Q ss_pred CCCCCCHHHHHHHHHHHHhccccccc
Q 007345 558 EDEGLTEEEIKAFYQEFEKRGMQLKL 583 (607)
Q Consensus 558 ~~e~lTeEEi~af~~~~~k~~m~~kl 583 (607)
.|.+||.|||++..++.. ..++.++
T Consensus 65 ~~~TLt~~ev~~~~~~i~-~~l~~~~ 89 (94)
T PF03147_consen 65 PDRTLTDEEVNEIHDKII-KALEKKL 89 (94)
T ss_dssp SSS---HHHHHHHHHHHH-HHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHH-HHHHHHh
Confidence 578999999999999987 3343333
No 20
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.02 E-value=1e+02 Score=33.29 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHHhhCCccCCCCCCCCCHHHHHHHHHH
Q 007345 535 YAAVDPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQE 573 (607)
Q Consensus 535 ~~~~~~eeE~afLrSLGWee~~~~~e~lTeEEi~af~~~ 573 (607)
+-..|..+-.+||++- |||||||..=|++
T Consensus 17 Vr~aPli~kr~FLksK----------GLT~eEI~eAfk~ 45 (300)
T KOG2629|consen 17 VRDAPLIKKREFLKSK----------GLTEEEIQEAFKR 45 (300)
T ss_pred cccchHHHHHHHHHhc----------CCCHHHHHHHHHh
Confidence 4456789999999986 5999999876665
No 21
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=20.35 E-value=1.1e+02 Score=27.34 Aligned_cols=30 Identities=13% Similarity=0.288 Sum_probs=15.4
Q ss_pred HHHHHhhCCc--cCCCCCCCCCHHHHHHHHHH
Q 007345 544 AAFLRSLGWE--ENSGEDEGLTEEEIKAFYQE 573 (607)
Q Consensus 544 ~afLrSLGWe--e~~~~~e~lTeEEi~af~~~ 573 (607)
.+||...|.+ +-+=.++++|.|||.+|+++
T Consensus 16 ~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 16 RKWLEARGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred HHHHHHcCCCeEEEecccCCCCHHHHHHHHHH
Confidence 3455555544 22223556666666666653
Done!