Query 007345
Match_columns 607
No_of_seqs 38 out of 40
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 23:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eo2_A Adult MALE hypothalamus 61.3 6 0.00021 33.3 3.2 30 541-572 31-60 (71)
2 1nkz_B Light-harvesting protei 55.0 6.2 0.00021 30.0 2.1 19 560-579 1-19 (41)
3 3ff5_A PEX14P, peroxisomal bio 54.5 11 0.00036 30.2 3.5 31 533-573 23-53 (54)
4 2w84_A Peroxisomal membrane pr 53.8 12 0.0004 31.4 3.8 33 533-575 28-60 (70)
5 1lgh_B LH II, B800/850, light 43.0 12 0.0004 29.0 2.0 19 560-579 6-24 (45)
6 1dx7_A Light-harvesting protei 25.0 14 0.00047 29.0 -0.3 18 561-579 10-27 (48)
7 1nha_A TFIIF-alpha, transcript 24.4 36 0.0012 29.3 2.1 16 557-572 14-29 (82)
8 1i27_A Transcription factor II 23.9 40 0.0014 28.5 2.3 16 557-572 5-20 (73)
9 1wrg_A LH-1, light-harvesting 17.4 30 0.001 27.7 0.2 19 560-579 9-27 (55)
10 2oa4_A SIR5; structure, struct 16.8 78 0.0027 27.7 2.7 22 558-579 58-79 (101)
No 1
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=61.29 E-value=6 Score=33.25 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=24.4
Q ss_pred HHHHHHHHhhCCccCCCCCCCCCHHHHHHHHH
Q 007345 541 DEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQ 572 (607)
Q Consensus 541 eeE~afLrSLGWee~~~~~e~lTeEEi~af~~ 572 (607)
+=..+-|+.||-+..+ -+.||+|||+.|.+
T Consensus 31 ~iql~RL~kLGI~ktd--P~~LT~eEi~~FaR 60 (71)
T 2eo2_A 31 EIQLSRLKKLGIHKTD--PSTLTEEEVRKFAR 60 (71)
T ss_dssp HHHHHHHHHHTCCCCS--TTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCC--cccCCHHHHhhcee
Confidence 6677889999998543 45699999999975
No 2
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=54.98 E-value=6.2 Score=30.04 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHhccc
Q 007345 560 EGLTEEEIKAFYQEFEKRGM 579 (607)
Q Consensus 560 e~lTeEEi~af~~~~~k~~m 579 (607)
+||||||-++|-..|+ .||
T Consensus 1 ~gLT~~EA~EfH~~~~-~~~ 19 (41)
T 1nkz_B 1 ATLTAEQSEELHKYVI-DGT 19 (41)
T ss_dssp CCCCHHHHHHHHHHHH-HHH
T ss_pred CCCCHHHHHHHHHHHH-HHH
Confidence 5899999999999998 444
No 3
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=54.52 E-value=11 Score=30.16 Aligned_cols=31 Identities=39% Similarity=0.517 Sum_probs=23.9
Q ss_pred ccCCCCCCHHHHHHHHhhCCccCCCCCCCCCHHHHHHHHHH
Q 007345 533 SRYAAVDPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQE 573 (607)
Q Consensus 533 ~~~~~~~~eeE~afLrSLGWee~~~~~e~lTeEEi~af~~~ 573 (607)
+.....|-++-.+||++- |||+|||.+-++.
T Consensus 23 p~V~~sp~~~K~~FL~sK----------GLt~~EI~~Al~r 53 (54)
T 3ff5_A 23 SRVRQSPLATRRAFLKKK----------GLTDEEIDLAFQQ 53 (54)
T ss_dssp TTGGGSCHHHHHHHHHHT----------TCCHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHc----------CCCHHHHHHHHHc
Confidence 335566778999999986 6999999876653
No 4
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=53.77 E-value=12 Score=31.37 Aligned_cols=33 Identities=36% Similarity=0.455 Sum_probs=26.3
Q ss_pred ccCCCCCCHHHHHHHHhhCCccCCCCCCCCCHHHHHHHHHHHH
Q 007345 533 SRYAAVDPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFE 575 (607)
Q Consensus 533 ~~~~~~~~eeE~afLrSLGWee~~~~~e~lTeEEi~af~~~~~ 575 (607)
+.....|-++-.+||++- |||+|||..-+++..
T Consensus 28 p~V~~sp~~~K~~FL~sK----------GLt~eEI~~Al~ra~ 60 (70)
T 2w84_A 28 SRVRQSPLATRRAFLKKK----------GLTDEEIDMAFQQSG 60 (70)
T ss_dssp TTGGGSCHHHHHHHHHHT----------TCCHHHHHHHHHHHT
T ss_pred hhhhhCCHHHHHHHHHHc----------CCCHHHHHHHHHHcc
Confidence 335566778999999986 599999998887754
No 5
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=42.97 E-value=12 Score=29.05 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHhccc
Q 007345 560 EGLTEEEIKAFYQEFEKRGM 579 (607)
Q Consensus 560 e~lTeEEi~af~~~~~k~~m 579 (607)
.||||||-++|-+.|+ .||
T Consensus 6 tGLT~~EA~EfH~~~~-~~~ 24 (45)
T 1lgh_B 6 SGLTEEEAIAVHDQFK-TTF 24 (45)
T ss_dssp SSCCHHHHHHHHHHHH-HHH
T ss_pred CCCCHHHHHHHHHHHH-HHH
Confidence 5999999999999998 444
No 6
>1dx7_A Light-harvesting protein B-875-beta chain; bacteriochlorophyll binding, membrane protein, photosynthesis; NMR {Rhodobacter sphaeroides} SCOP: f.3.1.1 PDB: 1jo5_A
Probab=25.00 E-value=14 Score=29.03 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhccc
Q 007345 561 GLTEEEIKAFYQEFEKRGM 579 (607)
Q Consensus 561 ~lTeEEi~af~~~~~k~~m 579 (607)
||||||-++|-..|+ .||
T Consensus 10 GLT~~EA~EfH~~~~-~~~ 27 (48)
T 1dx7_A 10 GLTDEQAQELHSVYM-SGL 27 (48)
T ss_dssp HHHHHHHHHHTHHHH-HHH
T ss_pred CCCHHHHHHHHHHHH-HHH
Confidence 899999999999998 444
No 7
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=24.37 E-value=36 Score=29.30 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=13.0
Q ss_pred CCCCCCCHHHHHHHHH
Q 007345 557 GEDEGLTEEEIKAFYQ 572 (607)
Q Consensus 557 ~~~e~lTeEEi~af~~ 572 (607)
..++++|||||+++..
T Consensus 14 ~~~~~iTEe~VRryL~ 29 (82)
T 1nha_A 14 SGDVQVTEDAVRRYLT 29 (82)
T ss_dssp --CCCCCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHH
Confidence 3788999999999887
No 8
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=23.88 E-value=40 Score=28.48 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHH
Q 007345 557 GEDEGLTEEEIKAFYQ 572 (607)
Q Consensus 557 ~~~e~lTeEEi~af~~ 572 (607)
..++++|||||+++..
T Consensus 5 ~~~~~iTEe~VrryL~ 20 (73)
T 1i27_A 5 SGDVQVTEDAVRRYLT 20 (73)
T ss_dssp CCCSSCCHHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHH
Confidence 3688999999999887
No 9
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=17.41 E-value=30 Score=27.71 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.0
Q ss_pred CCCCHHHHHHHHHHHHhccc
Q 007345 560 EGLTEEEIKAFYQEFEKRGM 579 (607)
Q Consensus 560 e~lTeEEi~af~~~~~k~~m 579 (607)
.|||+||-++|-.-|+ .||
T Consensus 9 tGLT~~EAqEfH~~f~-~~~ 27 (55)
T 1wrg_A 9 SGITEGEAKEFHKIFT-SSI 27 (55)
T ss_dssp HHHHHHHHHHHHHHHH-HHH
T ss_pred CCCCHHHHHHHHHHHH-HHH
Confidence 3899999999999998 443
No 10
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=16.81 E-value=78 Score=27.72 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=18.5
Q ss_pred CCCCCCHHHHHHHHHHHHhccc
Q 007345 558 EDEGLTEEEIKAFYQEFEKRGM 579 (607)
Q Consensus 558 ~~e~lTeEEi~af~~~~~k~~m 579 (607)
+-++|+++||..|.+.|.+-|+
T Consensus 58 ~ry~Is~~ei~~W~r~y~~~G~ 79 (101)
T 2oa4_A 58 QTYGLSDEEFNSWVSALAEHGK 79 (101)
T ss_dssp HTTCSSHHHHHHHHHHHHCCCS
T ss_pred HHhCCCHHHHHHHHHHHHHHhH
Confidence 4578999999999999996444
Done!