Query 007346
Match_columns 607
No_of_seqs 38 out of 40
Neff 3.0
Searched_HMMs 13730
Date Mon Mar 25 23:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007346.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007346hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1lghb_ f.3.1.1 (B:) Light-har 48.7 4 0.00029 29.6 2.0 19 560-579 4-22 (43)
2 d2oa4a1 a.4.12.3 (A:1-93) Unch 41.9 6.9 0.00051 32.2 2.7 22 558-579 58-79 (93)
3 d1jo5a_ f.3.1.1 (A:) Light-har 35.3 6.6 0.00048 29.1 1.4 21 559-580 8-28 (48)
4 d1oboa_ c.23.5.1 (A:) Flavodox 22.8 16 0.0012 30.7 1.9 27 550-576 139-165 (169)
5 d1i24a_ c.2.1.2 (A:) Sulfolipi 21.4 11 0.00082 34.3 0.6 28 547-576 342-369 (393)
6 d1khda1 a.46.2.1 (A:12-80) Ant 21.1 25 0.0018 25.8 2.5 33 537-576 31-63 (69)
7 d1uoua1 a.46.2.1 (A:33-100) Th 18.8 36 0.0026 25.1 2.9 19 558-576 13-31 (68)
8 d1brwa1 a.46.2.1 (A:1-70) Pyri 18.4 36 0.0026 25.0 2.8 19 558-576 12-30 (70)
9 d1r9ja2 c.36.1.10 (A:1-336) Tr 16.9 51 0.0037 31.1 4.2 35 539-576 265-300 (336)
10 d1jc2a_ a.39.1.5 (A:) Troponin 16.5 67 0.0049 23.3 4.0 27 541-575 29-55 (75)
No 1
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=48.73 E-value=4 Score=29.64 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHhccc
Q 007346 560 EGLTEEEIKAFYQEFEKRGM 579 (607)
Q Consensus 560 e~lTeEEi~af~~~~~k~~m 579 (607)
-||||||-++|-.-|| .||
T Consensus 4 sGLT~~EA~EfH~~~~-~g~ 22 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFK-TTF 22 (43)
T ss_dssp SSCCHHHHHHHHHHHH-HHH
T ss_pred CcCCHHHHHHHHHHHH-HHH
Confidence 4899999999999999 555
No 2
>d2oa4a1 a.4.12.3 (A:1-93) Uncharacterized protein SPO1678 {Silicibacter pomeroyi [TaxId: 89184]}
Probab=41.92 E-value=6.9 Score=32.20 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHHHHHHHhccc
Q 007346 558 EDEGLTEEEIKAFYQEFEKRGM 579 (607)
Q Consensus 558 ~~e~lTeEEi~af~~~~~k~~m 579 (607)
+-|+|++||+..|.++++.-|+
T Consensus 58 rrY~LS~eEf~~W~~a~~~hGe 79 (93)
T d2oa4a1 58 QTYGLSDEEFNSWVSALAEHGK 79 (93)
T ss_dssp HTTCSSHHHHHHHHHHHHCCCS
T ss_pred HHhCCCHHHHHHHHHHHHHHhH
Confidence 5789999999999999995443
No 3
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=35.32 E-value=6.6 Score=29.06 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHhcccc
Q 007346 559 DEGLTEEEIKAFYQEFEKRGMQ 580 (607)
Q Consensus 559 ~e~lTeEEi~af~~~~~k~~m~ 580 (607)
=-||||||-++|-.-|| .||.
T Consensus 8 ~tGLT~~EA~E~H~~~~-~g~~ 28 (48)
T d1jo5a_ 8 YTGLTDEQAQELHSVYM-SGLW 28 (48)
T ss_dssp TGGGHHHHHHHHHHHHH-HTTT
T ss_pred CCCCCHHHHHHHHHHHH-HHHH
Confidence 36999999999999999 6664
No 4
>d1oboa_ c.23.5.1 (A:) Flavodoxin {Anabaena, pcc 7119 and 7120 [TaxId: 1163]}
Probab=22.80 E-value=16 Score=30.70 Aligned_cols=27 Identities=19% Similarity=0.463 Sum_probs=21.2
Q ss_pred hCCccCCCCCCCCCHHHHHHHHHHHHh
Q 007346 550 LGWEENSGEDEGLTEEEIKAFYQEFEK 576 (607)
Q Consensus 550 LGWee~~~~~e~lTeEEi~af~~~~~k 576 (607)
+||--+.+.++-||||.|.+|+++.++
T Consensus 139 iGl~lD~d~~~e~t~eri~~Wv~~i~~ 165 (169)
T d1oboa_ 139 VGLALDEDNQSDLTDDRIKSWVAQLKS 165 (169)
T ss_dssp SSEEECTTTCGGGHHHHHHHHHHHHHH
T ss_pred EecCcCccCcccccHHHHHHHHHHHHH
Confidence 577655555678999999999999774
No 5
>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.38 E-value=11 Score=34.34 Aligned_cols=28 Identities=29% Similarity=0.383 Sum_probs=20.8
Q ss_pred HHhhCCccCCCCCCCCCHHHHHHHHHHHHh
Q 007346 547 LRSLGWEENSGEDEGLTEEEIKAFYQEFEK 576 (607)
Q Consensus 547 LrSLGWee~~~~~e~lTeEEi~af~~~~~k 576 (607)
||.|||+-.-+.|+++ +++-.|+++|+.
T Consensus 342 ~~~LGw~P~~~~~~~i--~~~~~~~~~~k~ 369 (393)
T d1i24a_ 342 LMELGLEPHYLSDSLL--DSLLNFAVQFKD 369 (393)
T ss_dssp HHHTTCCCCCCCHHHH--HHHHHHHHHTGG
T ss_pred HHHcCCccccCHHHHH--HHHHHHHHHHHH
Confidence 4679999766566665 778888888874
No 6
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=21.11 E-value=25 Score=25.81 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHhhCCccCCCCCCCCCHHHHHHHHHHHHh
Q 007346 537 AVDPDEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFEK 576 (607)
Q Consensus 537 ~~~~eeE~afLrSLGWee~~~~~e~lTeEEi~af~~~~~k 576 (607)
..+|++=+|||-.|-+. |+|.+||.+|.+-..+
T Consensus 31 ~~~d~qiaafL~al~~k-------g~t~dEi~g~~~am~~ 63 (69)
T d1khda1 31 ELEDSQLAAALISMKMR-------GERPEEIAGAASALLA 63 (69)
T ss_dssp CSCHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-------CCCHHHHHHHHHHHHH
Confidence 34567888999887543 5789999999887764
No 7
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.76 E-value=36 Score=25.06 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 007346 558 EDEGLTEEEIKAFYQEFEK 576 (607)
Q Consensus 558 ~~e~lTeEEi~af~~~~~k 576 (607)
+.+.||.|||+.|+..++.
T Consensus 13 ~g~~Ls~~E~~~~~~~i~~ 31 (68)
T d1uoua1 13 DGGRLSEADIRGFVAAVVN 31 (68)
T ss_dssp TTCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHc
Confidence 4578999999999999984
No 8
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=18.44 E-value=36 Score=25.01 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=14.9
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 007346 558 EDEGLTEEEIKAFYQEFEK 576 (607)
Q Consensus 558 ~~e~lTeEEi~af~~~~~k 576 (607)
+.+.||.+|++.|+.+++.
T Consensus 12 ~g~~Ls~~E~~~~~~~i~~ 30 (70)
T d1brwa1 12 DGKALTKEEIEWIVRGYTN 30 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHc
Confidence 3467888888888888874
No 9
>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]}
Probab=16.88 E-value=51 Score=31.08 Aligned_cols=35 Identities=11% Similarity=0.282 Sum_probs=22.8
Q ss_pred CCHHHHHHHH-hhCCccCCCCCCCCCHHHHHHHHHHHHh
Q 007346 539 DPDEEAAFLR-SLGWEENSGEDEGLTEEEIKAFYQEFEK 576 (607)
Q Consensus 539 ~~eeE~afLr-SLGWee~~~~~e~lTeEEi~af~~~~~k 576 (607)
+.+||.+-+| -|||+.+. .-.-.+||.+||++..+
T Consensus 265 l~~eEi~~~k~~lG~~p~~---~F~vp~~v~~~~~~~~~ 300 (336)
T d1r9ja2 265 LGEEDIANIKAKFGRDPQK---KYDVDDDVRAVFRMHID 300 (336)
T ss_dssp CCHHHHHHHHHHTTSCSSC---CSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCC---CccCCHHHHHHHHHHHH
Confidence 3466665555 99997433 12346788888887755
No 10
>d1jc2a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=16.48 E-value=67 Score=23.32 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=20.6
Q ss_pred HHHHHHHHhhCCccCCCCCCCCCHHHHHHHHHHHH
Q 007346 541 DEEAAFLRSLGWEENSGEDEGLTEEEIKAFYQEFE 575 (607)
Q Consensus 541 eeE~afLrSLGWee~~~~~e~lTeEEi~af~~~~~ 575 (607)
+|=...|++|| +.+|++||..+++++-
T Consensus 29 ~el~~~l~~lg--------~~~~~~e~~~~~~~~D 55 (75)
T d1jc2a_ 29 EELGEILRATG--------EHVIEEDIEDLMKDSD 55 (75)
T ss_dssp HHHHHHHHHSS--------SCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--------CCccHHHHHHHHHHhC
Confidence 44456788886 5789999999988764
Done!