Query 007349
Match_columns 607
No_of_seqs 207 out of 1755
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 22:22:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02762 pyruvate kinase compl 100.0 1E-130 2E-135 1074.1 56.9 467 98-606 24-509 (509)
2 PTZ00066 pyruvate kinase; Prov 100.0 2E-130 4E-135 1072.1 56.8 474 94-606 33-513 (513)
3 PLN02623 pyruvate kinase 100.0 1E-129 3E-134 1073.3 60.3 518 51-607 64-581 (581)
4 PRK06247 pyruvate kinase; Prov 100.0 4E-128 9E-133 1048.1 56.1 468 97-607 3-472 (476)
5 PRK09206 pyruvate kinase; Prov 100.0 7E-128 1E-132 1047.2 56.6 465 98-605 1-470 (470)
6 COG0469 PykF Pyruvate kinase [ 100.0 4E-127 9E-132 1035.8 52.7 470 96-605 2-477 (477)
7 PLN02461 Probable pyruvate kin 100.0 1E-126 2E-131 1043.5 56.0 466 96-606 18-511 (511)
8 PRK06354 pyruvate kinase; Prov 100.0 2E-125 3E-130 1054.0 57.5 469 96-605 5-478 (590)
9 PLN02765 pyruvate kinase 100.0 4E-125 8E-130 1031.5 56.3 471 98-606 27-525 (526)
10 cd00288 Pyruvate_Kinase Pyruva 100.0 2E-124 4E-129 1025.6 55.6 467 98-605 1-480 (480)
11 PRK05826 pyruvate kinase; Prov 100.0 1E-122 3E-127 1007.1 55.0 452 97-587 2-458 (465)
12 TIGR01064 pyruv_kin pyruvate k 100.0 1E-116 2E-121 966.3 54.1 465 99-602 1-473 (473)
13 PTZ00300 pyruvate kinase; Prov 100.0 2E-116 3E-121 954.7 53.0 440 125-605 1-453 (454)
14 KOG2323 Pyruvate kinase [Carbo 100.0 5E-112 1E-116 913.2 41.5 472 94-605 16-501 (501)
15 PF00224 PK: Pyruvate kinase, 100.0 2E-101 4E-106 818.6 32.3 337 98-472 1-344 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 2E-100 4E-105 806.2 39.3 330 100-471 2-333 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 9.5E-90 2.1E-94 757.5 40.4 336 91-471 131-598 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 3.7E-88 8E-93 739.4 39.7 335 91-470 125-480 (493)
19 PF02887 PK_C: Pyruvate kinase 100.0 1.4E-27 3E-32 216.4 15.0 115 488-604 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.7 2.9E-16 6.3E-21 160.5 10.1 132 302-447 69-234 (249)
21 PRK10558 alpha-dehydro-beta-de 99.7 2.9E-16 6.3E-21 161.1 9.7 134 301-448 75-242 (256)
22 COG3836 HpcH 2,4-dihydroxyhept 99.6 1.9E-15 4.1E-20 150.8 10.8 132 302-447 74-240 (255)
23 PRK10128 2-keto-3-deoxy-L-rham 99.6 2E-15 4.3E-20 155.7 10.6 129 305-447 78-241 (267)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.5 2.7E-14 5.9E-19 146.0 9.7 128 306-447 73-235 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.5 1.2E-14 2.5E-19 145.4 5.0 134 300-442 67-218 (221)
26 PRK06464 phosphoenolpyruvate s 99.2 1.1E-10 2.4E-15 136.6 13.1 150 301-470 617-791 (795)
27 TIGR01588 citE citrate lyase, 99.2 1.6E-10 3.4E-15 120.7 12.1 129 304-442 72-220 (288)
28 TIGR01418 PEP_synth phosphoeno 99.2 1.8E-10 3.9E-15 134.8 13.5 150 300-468 609-782 (782)
29 TIGR01417 PTS_I_fam phosphoeno 99.1 6E-10 1.3E-14 126.2 11.6 135 298-443 364-525 (565)
30 PRK11177 phosphoenolpyruvate-p 99.0 2.1E-09 4.6E-14 121.8 10.6 135 298-443 365-526 (575)
31 COG2301 CitE Citrate lyase bet 98.6 1.2E-07 2.5E-12 98.8 8.4 158 303-468 66-244 (283)
32 cd00480 malate_synt Malate syn 98.2 8.3E-05 1.8E-09 83.7 18.9 139 317-463 184-357 (511)
33 PF02896 PEP-utilizers_C: PEP- 98.2 1E-05 2.2E-10 85.1 10.9 133 300-443 119-278 (293)
34 cd00727 malate_synt_A Malate s 98.2 3.5E-05 7.6E-10 86.2 15.4 118 317-442 185-344 (511)
35 PRK09255 malate synthase; Vali 98.1 9.3E-05 2E-09 83.2 17.1 153 293-462 183-377 (531)
36 TIGR01344 malate_syn_A malate 97.9 0.00019 4.2E-09 80.4 15.9 140 293-442 163-345 (511)
37 PRK11061 fused phosphoenolpyru 97.2 0.00067 1.4E-08 79.9 7.6 133 300-443 532-692 (748)
38 PLN02626 malate synthase 97.1 0.0015 3.3E-08 73.5 8.7 123 319-443 213-372 (551)
39 TIGR01828 pyru_phos_dikin pyru 97.0 0.0042 9.1E-08 74.2 11.7 135 298-443 668-850 (856)
40 COG1080 PtsA Phosphoenolpyruva 96.7 0.0076 1.7E-07 68.2 10.1 133 300-443 368-527 (574)
41 PF00478 IMPDH: IMP dehydrogen 96.4 0.032 6.8E-07 60.5 12.1 124 304-443 107-240 (352)
42 PRK08649 inosine 5-monophospha 96.4 0.041 9E-07 60.0 12.7 121 307-443 144-285 (368)
43 PRK09279 pyruvate phosphate di 96.1 0.027 5.9E-07 67.5 10.4 136 297-443 673-856 (879)
44 PRK05096 guanosine 5'-monophos 95.5 0.28 6.1E-06 52.8 14.0 127 302-443 105-242 (346)
45 cd00381 IMPDH IMPDH: The catal 95.5 0.4 8.6E-06 51.4 15.3 124 304-443 93-226 (325)
46 TIGR02751 PEPCase_arch phospho 95.1 0.082 1.8E-06 59.6 8.8 91 317-407 122-247 (506)
47 TIGR01304 IMP_DH_rel_2 IMP deh 94.9 0.21 4.6E-06 54.5 11.4 120 308-443 146-284 (369)
48 TIGR01305 GMP_reduct_1 guanosi 94.8 0.62 1.3E-05 50.3 14.2 127 302-443 104-241 (343)
49 PRK13655 phosphoenolpyruvate c 94.5 0.14 3E-06 57.7 8.9 92 316-407 120-239 (494)
50 PTZ00314 inosine-5'-monophosph 94.5 0.86 1.9E-05 51.7 15.1 124 303-443 239-373 (495)
51 TIGR01302 IMP_dehydrog inosine 93.7 1.5 3.3E-05 49.1 14.9 127 302-443 221-356 (450)
52 PRK07807 inosine 5-monophospha 93.5 1 2.2E-05 51.0 13.3 129 301-443 223-359 (479)
53 PRK08745 ribulose-phosphate 3- 93.4 2.8 6E-05 42.9 15.0 140 308-465 76-221 (223)
54 PRK08883 ribulose-phosphate 3- 93.3 2 4.3E-05 43.7 13.9 137 308-464 72-216 (220)
55 PLN02274 inosine-5'-monophosph 93.0 1.6 3.6E-05 49.6 14.2 125 303-443 246-380 (505)
56 PTZ00398 phosphoenolpyruvate c 92.9 0.59 1.3E-05 57.0 10.8 88 320-407 548-661 (974)
57 PRK00009 phosphoenolpyruvate c 92.9 0.43 9.2E-06 57.8 9.6 91 317-407 486-604 (911)
58 COG3605 PtsP Signal transducti 92.8 0.34 7.3E-06 55.4 8.1 133 318-467 559-718 (756)
59 KOG2550 IMP dehydrogenase/GMP 92.8 0.39 8.5E-06 52.7 8.2 127 303-444 249-384 (503)
60 COG0574 PpsA Phosphoenolpyruva 92.5 0.73 1.6E-05 54.8 10.8 135 297-443 567-723 (740)
61 cd03174 DRE_TIM_metallolyase D 92.3 12 0.00027 37.8 18.2 194 300-513 14-225 (265)
62 PRK06843 inosine 5-monophospha 92.0 3.7 8E-05 45.6 14.7 125 303-443 151-285 (404)
63 PRK13125 trpA tryptophan synth 91.9 7 0.00015 40.1 15.9 116 308-443 92-214 (244)
64 PRK07107 inosine 5-monophospha 91.7 2.2 4.7E-05 48.7 12.9 122 307-443 244-381 (502)
65 PRK09722 allulose-6-phosphate 91.5 6.9 0.00015 40.2 15.1 142 308-467 73-223 (229)
66 TIGR01306 GMP_reduct_2 guanosi 91.3 5.2 0.00011 43.1 14.6 127 301-443 90-227 (321)
67 cd07944 DRE_TIM_HOA_like 4-hyd 90.9 23 0.00049 37.0 18.9 151 302-467 17-181 (266)
68 TIGR01303 IMP_DH_rel_1 IMP deh 90.5 5.9 0.00013 44.9 14.8 129 301-444 221-358 (475)
69 PRK01130 N-acetylmannosamine-6 90.5 7.1 0.00015 39.1 14.0 134 306-461 77-217 (221)
70 cd00429 RPE Ribulose-5-phospha 90.0 6.3 0.00014 38.5 13.0 134 308-459 71-210 (211)
71 PRK05458 guanosine 5'-monophos 89.8 10 0.00022 41.0 15.3 129 302-445 94-232 (326)
72 TIGR03151 enACPred_II putative 89.7 5.9 0.00013 42.2 13.4 114 306-443 76-190 (307)
73 cd04726 KGPDC_HPS 3-Keto-L-gul 89.3 12 0.00025 36.6 14.3 130 309-457 69-200 (202)
74 COG0036 Rpe Pentose-5-phosphat 89.0 6.5 0.00014 40.2 12.3 136 308-462 75-216 (220)
75 cd04730 NPD_like 2-Nitropropan 88.8 9.8 0.00021 38.1 13.7 115 306-443 69-185 (236)
76 TIGR01163 rpe ribulose-phospha 88.2 12 0.00027 36.5 13.6 135 308-458 70-208 (210)
77 PRK05567 inosine 5'-monophosph 88.1 10 0.00022 43.0 14.6 123 306-443 229-360 (486)
78 PRK08227 autoinducer 2 aldolas 88.1 3.9 8.5E-05 42.9 10.4 143 309-465 99-248 (264)
79 cd04740 DHOD_1B_like Dihydroor 88.1 29 0.00063 36.3 17.1 147 304-467 101-282 (296)
80 TIGR02090 LEU1_arch isopropylm 87.4 33 0.00072 37.4 17.5 156 301-466 18-183 (363)
81 COG2352 Ppc Phosphoenolpyruvat 87.0 1.4 3.1E-05 52.2 7.0 122 283-406 446-600 (910)
82 cd02940 DHPD_FMN Dihydropyrimi 86.8 16 0.00034 38.7 14.2 126 305-445 113-283 (299)
83 PRK08091 ribulose-phosphate 3- 86.3 22 0.00048 36.6 14.5 135 308-462 82-226 (228)
84 PTZ00170 D-ribulose-5-phosphat 86.2 17 0.00036 37.1 13.6 138 308-465 79-223 (228)
85 cd00958 DhnA Class I fructose- 86.0 13 0.00028 37.5 12.6 142 300-465 16-177 (235)
86 cd07945 DRE_TIM_CMS Leptospira 85.8 22 0.00048 37.4 14.7 238 302-573 16-270 (280)
87 PF14010 PEPcase_2: Phosphoeno 85.7 0.89 1.9E-05 51.3 4.3 91 316-406 119-244 (491)
88 PRK05581 ribulose-phosphate 3- 85.3 20 0.00044 35.4 13.5 139 307-462 74-217 (220)
89 PRK13813 orotidine 5'-phosphat 85.3 9.1 0.0002 38.1 11.0 131 311-465 74-214 (215)
90 PRK02048 4-hydroxy-3-methylbut 85.1 16 0.00034 42.5 13.9 175 283-463 20-223 (611)
91 cd00331 IGPS Indole-3-glycerol 84.8 23 0.0005 35.3 13.7 128 308-458 85-216 (217)
92 PF01959 DHQS: 3-dehydroquinat 84.8 7.4 0.00016 42.4 10.6 204 307-536 15-273 (354)
93 cd00958 DhnA Class I fructose- 84.5 3.2 7E-05 41.9 7.5 82 289-381 133-221 (235)
94 PF04551 GcpE: GcpE protein; 84.4 4.8 0.0001 43.8 9.0 154 307-467 34-201 (359)
95 CHL00200 trpA tryptophan synth 84.2 28 0.00061 36.5 14.4 120 308-443 110-231 (263)
96 PRK02290 3-dehydroquinate synt 84.1 24 0.00051 38.5 13.9 204 304-537 13-264 (344)
97 PLN02334 ribulose-phosphate 3- 84.1 41 0.00089 34.0 15.3 140 309-466 80-225 (229)
98 PF01791 DeoC: DeoC/LacD famil 84.0 5.2 0.00011 40.6 8.7 152 300-467 13-189 (236)
99 PRK14057 epimerase; Provisiona 83.9 32 0.0007 36.0 14.5 140 308-467 89-245 (254)
100 PRK00915 2-isopropylmalate syn 83.9 39 0.00084 38.7 16.5 153 301-466 22-191 (513)
101 cd00945 Aldolase_Class_I Class 83.9 33 0.00071 32.6 13.9 119 308-443 17-149 (201)
102 PRK08005 epimerase; Validated 83.7 27 0.00058 35.5 13.6 131 308-460 72-208 (210)
103 cd04724 Tryptophan_synthase_al 83.5 30 0.00065 35.5 14.1 145 298-464 9-184 (242)
104 cd02810 DHOD_DHPD_FMN Dihydroo 83.3 33 0.00072 35.6 14.6 128 303-443 109-272 (289)
105 TIGR02660 nifV_homocitr homoci 83.1 40 0.00087 36.7 15.7 155 301-466 19-184 (365)
106 PRK00694 4-hydroxy-3-methylbut 82.8 9 0.0002 44.2 10.7 177 283-470 24-231 (606)
107 cd04722 TIM_phosphate_binding 82.8 28 0.00061 32.5 12.8 116 310-443 77-199 (200)
108 PRK08318 dihydropyrimidine deh 82.7 30 0.00065 38.2 14.7 125 305-444 113-283 (420)
109 PRK15452 putative protease; Pr 82.5 5.5 0.00012 44.7 8.9 91 305-411 11-119 (443)
110 PRK07565 dihydroorotate dehydr 82.4 23 0.0005 38.0 13.3 146 306-470 115-290 (334)
111 cd04732 HisA HisA. Phosphorib 81.8 35 0.00076 34.1 13.7 129 307-454 85-230 (234)
112 PRK13307 bifunctional formalde 81.5 21 0.00046 39.5 12.8 133 310-463 243-378 (391)
113 cd04729 NanE N-acetylmannosami 81.4 29 0.00064 34.7 12.9 118 306-443 81-206 (219)
114 cd07939 DRE_TIM_NifV Streptomy 81.3 70 0.0015 33.0 18.1 155 301-466 16-181 (259)
115 PRK07695 transcriptional regul 81.0 38 0.00082 33.4 13.4 131 311-464 67-198 (201)
116 PRK11858 aksA trans-homoaconit 80.9 82 0.0018 34.6 17.1 156 301-466 22-187 (378)
117 cd00452 KDPG_aldolase KDPG and 80.9 37 0.0008 33.3 13.2 103 308-443 20-124 (190)
118 PF00682 HMGL-like: HMGL-like 80.7 66 0.0014 32.3 16.6 194 302-513 11-216 (237)
119 PF00834 Ribul_P_3_epim: Ribul 80.6 7.6 0.00017 39.0 8.3 117 308-443 71-194 (201)
120 TIGR00612 ispG_gcpE 1-hydroxy- 80.6 18 0.00039 39.3 11.4 245 308-586 38-297 (346)
121 cd00640 Trp-synth-beta_II Tryp 80.6 44 0.00095 33.7 14.0 117 393-533 64-188 (244)
122 PRK04302 triosephosphate isome 80.2 43 0.00093 33.8 13.7 136 310-460 78-219 (223)
123 PF00478 IMPDH: IMP dehydrogen 80.1 3.8 8.2E-05 44.7 6.3 51 99-149 95-145 (352)
124 TIGR00977 LeuA_rel 2-isopropyl 79.5 33 0.00072 39.5 14.0 162 301-467 19-197 (526)
125 PRK06852 aldolase; Validated 79.2 37 0.00079 36.5 13.2 132 355-507 55-205 (304)
126 cd02803 OYE_like_FMN_family Ol 79.0 79 0.0017 33.4 15.9 132 300-443 129-311 (327)
127 PRK00507 deoxyribose-phosphate 78.9 46 0.00099 34.0 13.4 147 300-463 17-176 (221)
128 KOG3111 D-ribulose-5-phosphate 78.8 74 0.0016 32.3 14.2 139 309-467 79-221 (224)
129 PRK08227 autoinducer 2 aldolas 78.5 30 0.00065 36.4 12.2 145 361-529 48-196 (264)
130 TIGR00973 leuA_bact 2-isopropy 78.3 91 0.002 35.6 16.9 151 302-466 20-188 (494)
131 PF00311 PEPcase: Phosphoenolp 78.1 4.3 9.3E-05 48.8 6.5 88 320-407 366-481 (794)
132 PRK07028 bifunctional hexulose 77.6 60 0.0013 36.1 15.0 138 309-464 73-211 (430)
133 TIGR03128 RuMP_HxlA 3-hexulose 77.5 75 0.0016 31.1 15.9 136 309-462 68-205 (206)
134 PLN02591 tryptophan synthase 77.4 78 0.0017 33.0 14.8 119 308-444 97-219 (250)
135 COG0826 Collagenase and relate 77.1 39 0.00084 36.9 12.9 117 305-447 14-148 (347)
136 cd00405 PRAI Phosphoribosylant 76.7 26 0.00057 34.6 10.8 118 306-447 8-131 (203)
137 PRK05581 ribulose-phosphate 3- 76.6 60 0.0013 32.0 13.4 131 308-465 20-163 (220)
138 PRK09389 (R)-citramalate synth 76.5 1.5E+02 0.0032 33.9 18.0 154 302-465 21-184 (488)
139 PRK00043 thiE thiamine-phospha 76.4 44 0.00095 32.7 12.2 132 309-466 73-211 (212)
140 PRK07428 nicotinate-nucleotide 76.3 7.2 0.00016 41.4 7.0 66 305-375 204-272 (288)
141 PRK07315 fructose-bisphosphate 76.0 27 0.00058 37.2 11.2 126 335-466 67-200 (293)
142 TIGR01163 rpe ribulose-phospha 75.7 83 0.0018 30.7 14.6 136 308-467 15-160 (210)
143 cd00381 IMPDH IMPDH: The catal 75.6 5.5 0.00012 42.8 6.0 50 101-150 83-132 (325)
144 PLN02925 4-hydroxy-3-methylbut 75.0 15 0.00033 43.3 9.6 177 283-468 89-294 (733)
145 KOG3974 Predicted sugar kinase 74.8 20 0.00043 37.9 9.4 116 312-437 52-179 (306)
146 PRK00286 xseA exodeoxyribonucl 74.7 1.1E+02 0.0024 34.0 16.2 201 141-408 9-230 (438)
147 PRK13210 putative L-xylulose 5 74.6 1E+02 0.0023 31.4 15.3 121 308-433 20-172 (284)
148 PRK00278 trpC indole-3-glycero 74.6 86 0.0019 32.6 14.3 130 309-459 125-256 (260)
149 cd00945 Aldolase_Class_I Class 74.1 82 0.0018 29.9 15.1 107 422-535 64-182 (201)
150 PF03102 NeuB: NeuB family; I 72.9 20 0.00043 37.2 9.0 98 329-453 55-154 (241)
151 TIGR00126 deoC deoxyribose-pho 72.6 47 0.001 33.7 11.5 145 300-464 13-173 (211)
152 TIGR00262 trpA tryptophan synt 72.4 79 0.0017 32.9 13.4 118 308-443 106-227 (256)
153 TIGR03586 PseI pseudaminic aci 72.3 58 0.0013 35.3 12.8 93 330-447 77-172 (327)
154 TIGR01949 AroFGH_arch predicte 72.3 49 0.0011 34.1 11.9 146 300-465 31-190 (258)
155 TIGR00007 phosphoribosylformim 72.1 48 0.001 33.2 11.5 126 305-452 82-227 (230)
156 COG0119 LeuA Isopropylmalate/h 72.1 1.7E+02 0.0037 32.7 17.5 242 301-574 20-273 (409)
157 cd00954 NAL N-Acetylneuraminic 71.9 24 0.00053 36.9 9.6 97 308-408 25-134 (288)
158 PRK06512 thiamine-phosphate py 71.4 57 0.0012 33.2 11.8 131 310-464 80-213 (221)
159 PRK12483 threonine dehydratase 71.3 57 0.0012 37.6 13.0 155 346-536 52-224 (521)
160 TIGR03569 NeuB_NnaB N-acetylne 71.3 59 0.0013 35.3 12.5 92 329-445 75-171 (329)
161 cd01561 CBS_like CBS_like: Thi 71.0 65 0.0014 33.6 12.6 123 393-535 67-197 (291)
162 PLN02321 2-isopropylmalate syn 71.0 66 0.0014 38.0 13.7 155 302-466 105-282 (632)
163 PRK00366 ispG 4-hydroxy-3-meth 70.4 63 0.0014 35.5 12.4 216 308-555 46-274 (360)
164 PLN02746 hydroxymethylglutaryl 70.4 75 0.0016 34.8 13.1 164 286-465 54-238 (347)
165 PRK13397 3-deoxy-7-phosphohept 70.3 76 0.0016 33.2 12.6 88 331-443 67-156 (250)
166 PRK05718 keto-hydroxyglutarate 70.2 35 0.00076 34.6 9.9 103 325-442 22-134 (212)
167 cd01568 QPRTase_NadC Quinolina 70.1 13 0.00028 38.9 7.1 64 305-374 189-255 (269)
168 PRK08385 nicotinate-nucleotide 69.9 16 0.00034 38.7 7.7 65 306-375 191-260 (278)
169 PLN02495 oxidoreductase, actin 69.9 1.8E+02 0.004 32.2 16.9 149 302-467 124-322 (385)
170 TIGR01859 fruc_bis_ald_ fructo 69.8 56 0.0012 34.5 11.8 117 346-466 75-199 (282)
171 cd01562 Thr-dehyd Threonine de 69.8 59 0.0013 33.9 11.9 118 392-534 78-201 (304)
172 PRK04180 pyridoxal biosynthesi 69.8 63 0.0014 34.6 11.9 114 324-470 58-174 (293)
173 TIGR00736 nifR3_rel_arch TIM-b 69.8 1.2E+02 0.0027 31.2 13.9 123 301-444 76-221 (231)
174 cd04726 KGPDC_HPS 3-Keto-L-gul 69.7 49 0.0011 32.2 10.7 116 303-443 11-133 (202)
175 PRK14045 1-aminocyclopropane-1 69.6 1.2E+02 0.0025 32.5 14.4 126 393-535 86-221 (329)
176 TIGR01037 pyrD_sub1_fam dihydr 69.6 1.5E+02 0.0033 31.0 16.0 122 328-470 141-284 (300)
177 PRK07259 dihydroorotate dehydr 69.4 1.5E+02 0.0033 31.0 15.7 145 304-469 103-283 (301)
178 PRK12595 bifunctional 3-deoxy- 69.1 60 0.0013 35.6 12.2 90 330-443 169-259 (360)
179 PRK07226 fructose-bisphosphate 68.9 62 0.0013 33.6 11.8 141 300-464 34-193 (267)
180 PRK15447 putative protease; Pr 68.6 68 0.0015 34.1 12.2 117 305-447 15-142 (301)
181 PRK08329 threonine synthase; V 68.5 1.8E+02 0.0038 31.5 15.6 117 394-535 119-247 (347)
182 cd00408 DHDPS-like Dihydrodipi 68.5 39 0.00085 34.9 10.2 97 308-408 22-129 (281)
183 TIGR01037 pyrD_sub1_fam dihydr 68.2 1.5E+02 0.0032 31.1 14.6 142 288-444 6-190 (300)
184 TIGR01302 IMP_dehydrog inosine 68.1 9.1 0.0002 42.9 5.8 49 101-149 213-261 (450)
185 PRK03620 5-dehydro-4-deoxygluc 67.9 33 0.00071 36.4 9.6 97 308-408 32-138 (303)
186 PRK09250 fructose-bisphosphate 67.9 82 0.0018 34.5 12.6 136 357-512 89-241 (348)
187 PRK13398 3-deoxy-7-phosphohept 67.9 84 0.0018 33.0 12.5 106 329-458 77-185 (266)
188 cd04742 NPD_FabD 2-Nitropropan 67.8 1.2E+02 0.0025 34.2 14.2 125 306-443 84-248 (418)
189 PLN02970 serine racemase 67.3 79 0.0017 33.8 12.5 153 346-535 42-212 (328)
190 PF01274 Malate_synthase: Mala 66.9 12 0.00026 43.1 6.4 125 317-443 203-364 (526)
191 PRK07709 fructose-bisphosphate 66.9 41 0.00089 35.8 10.0 117 345-466 77-202 (285)
192 TIGR00674 dapA dihydrodipicoli 66.5 34 0.00074 35.7 9.3 97 308-408 23-130 (285)
193 PRK14024 phosphoribosyl isomer 66.2 1E+02 0.0022 31.5 12.6 134 306-456 86-235 (241)
194 PF03060 NMO: Nitronate monoox 66.1 86 0.0019 33.7 12.5 114 306-443 102-219 (330)
195 cd02811 IDI-2_FMN Isopentenyl- 65.8 1.3E+02 0.0028 32.4 13.7 55 402-469 255-312 (326)
196 TIGR03128 RuMP_HxlA 3-hexulose 65.8 1.2E+02 0.0026 29.7 12.7 121 302-444 9-134 (206)
197 cd01573 modD_like ModD; Quinol 65.5 20 0.00043 37.7 7.3 65 306-375 192-259 (272)
198 PRK06843 inosine 5-monophospha 65.5 10 0.00022 42.2 5.4 50 100-149 141-190 (404)
199 cd02932 OYE_YqiM_FMN Old yello 65.4 1.3E+02 0.0028 32.2 13.7 129 301-443 143-320 (336)
200 PRK05458 guanosine 5'-monophos 65.4 10 0.00023 40.9 5.3 45 105-149 90-136 (326)
201 PRK05692 hydroxymethylglutaryl 65.3 1.8E+02 0.0039 30.7 14.5 193 302-512 23-233 (287)
202 PRK05096 guanosine 5'-monophos 65.2 13 0.00028 40.5 5.9 48 102-149 98-147 (346)
203 COG0167 PyrD Dihydroorotate de 64.9 2.1E+02 0.0045 31.0 15.4 151 303-469 107-295 (310)
204 COG0352 ThiE Thiamine monophos 64.9 1.1E+02 0.0024 31.2 12.2 131 310-465 74-208 (211)
205 PRK07226 fructose-bisphosphate 64.8 1.2E+02 0.0025 31.6 12.8 57 401-465 195-253 (267)
206 COG1830 FbaB DhnA-type fructos 64.6 1.2E+02 0.0026 32.1 12.6 165 335-523 13-201 (265)
207 cd02809 alpha_hydroxyacid_oxid 64.2 1.5E+02 0.0033 31.3 13.7 113 308-444 133-257 (299)
208 PRK07334 threonine dehydratase 64.1 94 0.002 34.3 12.6 118 393-535 85-208 (403)
209 cd04728 ThiG Thiazole synthase 64.1 1.6E+02 0.0036 30.8 13.4 86 368-469 145-230 (248)
210 PRK05848 nicotinate-nucleotide 64.0 26 0.00056 37.0 7.8 67 306-375 191-258 (273)
211 TIGR01305 GMP_reduct_1 guanosi 63.9 14 0.0003 40.2 5.9 48 102-149 97-146 (343)
212 cd07940 DRE_TIM_IPMS 2-isoprop 63.8 1.9E+02 0.004 30.0 18.1 155 301-466 16-185 (268)
213 PRK06015 keto-hydroxyglutarate 63.7 29 0.00063 35.0 7.8 41 389-443 84-124 (201)
214 cd04727 pdxS PdxS is a subunit 63.6 1.1E+02 0.0023 32.8 12.1 113 326-470 51-165 (283)
215 COG1465 Predicted alternative 63.6 1.1E+02 0.0025 32.8 12.2 132 308-468 19-194 (376)
216 PRK03170 dihydrodipicolinate s 63.4 45 0.00098 34.9 9.6 97 308-408 26-133 (292)
217 COG0329 DapA Dihydrodipicolina 62.8 86 0.0019 33.3 11.6 106 308-425 29-145 (299)
218 PRK04147 N-acetylneuraminate l 62.8 70 0.0015 33.6 10.9 97 308-408 28-136 (293)
219 COG0274 DeoC Deoxyribose-phosp 62.8 50 0.0011 34.1 9.3 148 300-463 19-180 (228)
220 PRK06815 hypothetical protein; 62.3 79 0.0017 33.6 11.3 118 393-535 82-205 (317)
221 TIGR01361 DAHP_synth_Bsub phos 62.2 60 0.0013 33.9 10.1 91 329-443 75-166 (260)
222 PRK07998 gatY putative fructos 61.9 40 0.00086 35.9 8.8 117 344-465 73-197 (283)
223 cd00950 DHDPS Dihydrodipicolin 61.7 47 0.001 34.5 9.3 97 308-408 25-132 (284)
224 PRK00311 panB 3-methyl-2-oxobu 61.6 1.4E+02 0.0031 31.4 12.7 131 300-443 18-181 (264)
225 PTZ00314 inosine-5'-monophosph 61.3 11 0.00024 42.9 4.9 45 105-149 234-278 (495)
226 cd04737 LOX_like_FMN L-Lactate 61.3 93 0.002 34.1 11.7 93 328-443 209-305 (351)
227 PLN02274 inosine-5'-monophosph 61.0 15 0.00032 42.0 5.8 50 100-149 236-285 (505)
228 cd07948 DRE_TIM_HCS Saccharomy 60.9 2.2E+02 0.0047 29.8 18.7 163 286-464 8-181 (262)
229 TIGR01127 ilvA_1Cterm threonin 60.9 1.1E+02 0.0023 33.3 12.2 119 393-536 62-186 (380)
230 cd00957 Transaldolase_TalAB Tr 60.8 3.6 7.9E-05 44.2 0.9 20 312-332 164-183 (313)
231 COG1751 Uncharacterized conser 60.7 20 0.00044 34.9 5.7 47 488-534 12-60 (186)
232 PF03437 BtpA: BtpA family; I 60.7 26 0.00057 36.6 7.1 74 315-392 170-250 (254)
233 PRK06382 threonine dehydratase 60.1 1.2E+02 0.0027 33.4 12.7 118 394-536 88-211 (406)
234 TIGR01949 AroFGH_arch predicte 59.9 25 0.00055 36.2 6.9 69 305-378 156-231 (258)
235 PRK06381 threonine synthase; V 59.8 1.4E+02 0.0031 31.5 12.7 118 393-535 77-209 (319)
236 PRK00208 thiG thiazole synthas 59.6 2.2E+02 0.0047 29.9 13.4 86 368-469 145-230 (250)
237 cd00377 ICL_PEPM Members of th 59.5 63 0.0014 33.3 9.6 112 308-443 88-226 (243)
238 cd00429 RPE Ribulose-5-phospha 59.4 1.8E+02 0.0038 28.3 16.0 141 300-467 7-161 (211)
239 PRK09224 threonine dehydratase 59.4 1.3E+02 0.0028 34.4 13.0 119 393-536 82-207 (504)
240 cd00331 IGPS Indole-3-glycerol 59.3 1.9E+02 0.0041 28.7 13.5 130 303-465 29-168 (217)
241 TIGR01138 cysM cysteine syntha 59.3 2E+02 0.0043 30.2 13.5 121 393-535 73-200 (290)
242 TIGR01136 cysKM cysteine synth 59.3 1.6E+02 0.0035 30.8 12.9 121 393-535 72-200 (299)
243 cd04739 DHOD_like Dihydroorota 58.9 2.6E+02 0.0056 30.0 16.0 145 305-470 112-288 (325)
244 PRK13209 L-xylulose 5-phosphat 58.9 1.6E+02 0.0034 30.2 12.5 40 308-347 25-74 (283)
245 PF00290 Trp_syntA: Tryptophan 58.8 2E+02 0.0044 30.2 13.2 118 309-443 107-226 (259)
246 cd00959 DeoC 2-deoxyribose-5-p 58.8 1E+02 0.0023 30.6 10.8 141 300-464 12-172 (203)
247 TIGR00078 nadC nicotinate-nucl 58.3 24 0.00052 37.0 6.4 64 305-374 186-250 (265)
248 TIGR02814 pfaD_fam PfaD family 58.3 1.6E+02 0.0035 33.3 13.2 123 306-442 89-252 (444)
249 PLN02495 oxidoreductase, actin 58.2 1.3E+02 0.0028 33.4 12.3 50 387-446 166-217 (385)
250 TIGR00683 nanA N-acetylneurami 57.9 1.4E+02 0.003 31.5 12.1 97 308-408 25-134 (290)
251 PRK08610 fructose-bisphosphate 57.7 96 0.0021 33.0 10.8 116 345-466 77-202 (286)
252 PRK02615 thiamine-phosphate py 57.6 1.3E+02 0.0028 33.0 12.0 130 311-465 211-344 (347)
253 TIGR00167 cbbA ketose-bisphosp 57.3 95 0.0021 33.1 10.7 124 339-466 71-205 (288)
254 PRK04452 acetyl-CoA decarbonyl 57.3 1.7E+02 0.0037 31.7 12.7 148 304-466 136-312 (319)
255 TIGR00343 pyridoxal 5'-phospha 57.3 2.7E+02 0.0059 29.8 14.3 55 400-465 195-250 (287)
256 cd04733 OYE_like_2_FMN Old yel 57.2 2.4E+02 0.0051 30.3 14.0 23 301-323 138-168 (338)
257 TIGR00259 thylakoid_BtpA membr 57.2 46 0.00099 34.9 8.2 72 302-376 154-229 (257)
258 cd04738 DHOD_2_like Dihydrooro 57.2 2.3E+02 0.0049 30.4 13.7 92 343-446 200-312 (327)
259 PRK05742 nicotinate-nucleotide 57.2 28 0.00061 36.8 6.7 64 304-375 196-262 (277)
260 PLN02417 dihydrodipicolinate s 57.1 59 0.0013 34.0 9.1 95 308-408 26-131 (280)
261 PRK06552 keto-hydroxyglutarate 57.0 79 0.0017 32.1 9.7 107 321-442 16-135 (213)
262 TIGR00343 pyridoxal 5'-phospha 56.8 1.6E+02 0.0034 31.6 12.0 113 325-469 52-166 (287)
263 PRK05283 deoxyribose-phosphate 56.8 1.3E+02 0.0028 31.7 11.3 152 300-465 21-189 (257)
264 PRK09250 fructose-bisphosphate 56.4 2.7E+02 0.0059 30.6 14.0 147 309-464 151-338 (348)
265 TIGR02708 L_lactate_ox L-lacta 56.3 62 0.0014 35.7 9.4 94 328-445 216-314 (367)
266 TIGR01306 GMP_reduct_2 guanosi 56.3 22 0.00047 38.5 5.8 48 102-149 84-133 (321)
267 PF05690 ThiG: Thiazole biosyn 56.2 46 0.00099 34.7 7.8 84 368-467 145-228 (247)
268 PRK07896 nicotinate-nucleotide 56.0 47 0.001 35.4 8.1 65 306-375 208-275 (289)
269 cd00951 KDGDH 5-dehydro-4-deox 56.0 1.3E+02 0.0028 31.6 11.5 95 308-408 25-131 (289)
270 cd00564 TMP_TenI Thiamine mono 56.0 1.8E+02 0.004 27.5 12.0 132 309-461 64-196 (196)
271 PRK09856 fructoselysine 3-epim 56.0 2.3E+02 0.0051 28.8 13.2 100 308-407 17-147 (275)
272 PRK11840 bifunctional sulfur c 55.9 1.8E+02 0.0039 31.7 12.4 85 368-468 219-303 (326)
273 PRK04180 pyridoxal biosynthesi 55.7 2.9E+02 0.0063 29.7 14.6 137 308-465 87-256 (293)
274 PRK07084 fructose-bisphosphate 55.6 1.4E+02 0.003 32.5 11.6 123 340-466 80-215 (321)
275 TIGR01182 eda Entner-Doudoroff 55.5 1.2E+02 0.0026 30.7 10.6 101 311-443 27-128 (204)
276 PRK00278 trpC indole-3-glycero 55.4 2.4E+02 0.0053 29.3 13.2 108 306-444 71-188 (260)
277 PLN02826 dihydroorotate dehydr 55.3 3.4E+02 0.0075 30.4 16.8 109 344-470 261-392 (409)
278 TIGR01139 cysK cysteine syntha 55.2 1.8E+02 0.0039 30.4 12.4 121 394-535 72-200 (298)
279 TIGR02313 HpaI-NOT-DapA 2,4-di 54.8 1.4E+02 0.0031 31.5 11.5 97 308-408 25-133 (294)
280 PRK09140 2-dehydro-3-deoxy-6-p 54.7 1.7E+02 0.0036 29.5 11.5 109 303-442 20-130 (206)
281 cd06557 KPHMT-like Ketopantoat 54.5 1.5E+02 0.0032 31.1 11.3 146 300-467 15-193 (254)
282 PF07521 RMMBL: RNA-metabolisi 54.1 9 0.00019 29.0 1.8 24 125-148 7-31 (43)
283 PRK15447 putative protease; Pr 53.9 70 0.0015 34.0 9.1 67 368-443 29-95 (301)
284 PLN03013 cysteine synthase 53.7 1.9E+02 0.004 32.7 12.7 122 394-536 190-318 (429)
285 PF01729 QRPTase_C: Quinolinat 53.5 30 0.00066 33.8 5.8 63 308-375 91-156 (169)
286 PRK15452 putative protease; Pr 53.3 70 0.0015 36.1 9.4 87 346-443 4-96 (443)
287 cd01572 QPRTase Quinolinate ph 53.1 38 0.00083 35.5 6.9 63 305-375 190-255 (268)
288 cd04723 HisA_HisF Phosphoribos 52.9 1.7E+02 0.0037 29.8 11.4 129 307-456 90-231 (233)
289 cd07938 DRE_TIM_HMGL 3-hydroxy 52.7 3E+02 0.0064 28.9 14.8 155 302-465 17-190 (274)
290 COG0826 Collagenase and relate 52.4 77 0.0017 34.6 9.3 82 355-443 13-99 (347)
291 TIGR03572 WbuZ glycosyl amidat 52.2 2.2E+02 0.0048 28.5 12.1 34 398-443 193-227 (232)
292 PRK08072 nicotinate-nucleotide 52.1 32 0.0007 36.4 6.2 65 303-375 194-261 (277)
293 PRK08638 threonine dehydratase 52.1 1.8E+02 0.0039 31.3 12.0 118 393-535 89-212 (333)
294 TIGR01137 cysta_beta cystathio 52.0 2.1E+02 0.0045 31.8 12.8 125 393-535 76-207 (454)
295 TIGR00237 xseA exodeoxyribonuc 51.7 91 0.002 35.0 10.0 37 368-408 188-225 (432)
296 PF00899 ThiF: ThiF family; I 51.4 84 0.0018 28.8 8.2 66 332-408 58-123 (135)
297 cd02808 GltS_FMN Glutamate syn 51.2 3.4E+02 0.0073 30.1 14.2 119 312-443 178-314 (392)
298 TIGR02320 PEP_mutase phosphoen 51.0 2.5E+02 0.0055 29.8 12.7 67 308-374 96-189 (285)
299 PRK07476 eutB threonine dehydr 50.9 1.9E+02 0.0041 30.8 11.9 118 393-535 81-204 (322)
300 PRK05286 dihydroorotate dehydr 50.8 2.4E+02 0.0052 30.5 12.7 130 305-446 157-321 (344)
301 PRK02083 imidazole glycerol ph 50.7 2.9E+02 0.0063 28.2 14.5 130 306-456 85-240 (253)
302 PRK06096 molybdenum transport 50.5 34 0.00074 36.3 6.1 64 306-374 198-264 (284)
303 cd00947 TBP_aldolase_IIB Tagat 50.3 1.4E+02 0.0031 31.6 10.6 119 344-466 68-195 (276)
304 TIGR00674 dapA dihydrodipicoli 50.3 97 0.0021 32.3 9.4 95 362-467 26-124 (285)
305 cd00952 CHBPH_aldolase Trans-o 50.3 2.2E+02 0.0047 30.4 12.1 97 308-408 33-141 (309)
306 PRK05835 fructose-bisphosphate 50.2 1.8E+02 0.0039 31.4 11.4 118 345-466 74-203 (307)
307 cd00954 NAL N-Acetylneuraminic 50.2 1.1E+02 0.0024 32.0 9.9 95 361-466 27-126 (288)
308 PRK10717 cysteine synthase A; 49.6 2E+02 0.0044 30.6 11.9 127 393-535 78-213 (330)
309 PLN02424 ketopantoate hydroxym 49.5 2.5E+02 0.0055 30.6 12.4 133 298-443 36-202 (332)
310 PRK12290 thiE thiamine-phospha 49.4 1.3E+02 0.0028 34.1 10.5 95 358-465 307-414 (437)
311 cd02933 OYE_like_FMN Old yello 49.3 3.1E+02 0.0066 29.7 13.3 125 300-443 140-314 (338)
312 cd02922 FCB2_FMN Flavocytochro 49.3 1.3E+02 0.0028 32.8 10.4 94 327-443 200-300 (344)
313 TIGR00874 talAB transaldolase. 49.2 13 0.00028 40.1 2.7 20 312-332 164-183 (317)
314 PLN02550 threonine dehydratase 49.1 1.9E+02 0.0041 34.1 12.2 122 393-539 171-299 (591)
315 PRK07028 bifunctional hexulose 48.7 3.6E+02 0.0077 30.0 14.0 124 299-443 10-138 (430)
316 PRK08639 threonine dehydratase 48.6 2.1E+02 0.0045 31.8 12.1 121 393-535 87-216 (420)
317 PRK06801 hypothetical protein; 48.6 1.7E+02 0.0037 31.1 11.0 118 344-465 73-201 (286)
318 TIGR00875 fsa_talC_mipB fructo 48.5 46 0.001 33.8 6.4 59 310-374 115-185 (213)
319 TIGR03249 KdgD 5-dehydro-4-deo 48.4 2.2E+02 0.0048 30.0 11.8 95 308-408 30-136 (296)
320 COG0042 tRNA-dihydrouridine sy 48.4 53 0.0011 35.4 7.2 66 311-379 159-233 (323)
321 TIGR03528 2_3_DAP_am_ly diamin 48.3 2E+02 0.0044 31.8 11.9 124 393-534 127-263 (396)
322 PRK08185 hypothetical protein; 48.3 2.1E+02 0.0045 30.5 11.5 119 344-466 67-197 (283)
323 PRK13111 trpA tryptophan synth 48.2 1.9E+02 0.004 30.3 11.0 117 308-443 108-228 (258)
324 PRK12738 kbaY tagatose-bisphos 47.9 1.7E+02 0.0037 31.2 10.8 118 344-465 73-200 (286)
325 cd00405 PRAI Phosphoribosylant 47.9 2.8E+02 0.0061 27.2 12.0 115 311-450 67-190 (203)
326 PRK08198 threonine dehydratase 47.8 2.9E+02 0.0063 30.3 13.1 119 393-536 84-208 (404)
327 PF01136 Peptidase_U32: Peptid 47.8 35 0.00076 34.2 5.5 42 112-153 157-198 (233)
328 cd00408 DHDPS-like Dihydrodipi 47.7 1.2E+02 0.0025 31.4 9.4 160 368-550 32-201 (281)
329 PRK06110 hypothetical protein; 47.6 2.2E+02 0.0047 30.3 11.7 116 394-535 85-206 (322)
330 PF01207 Dus: Dihydrouridine s 47.5 36 0.00078 36.3 5.7 67 307-379 141-218 (309)
331 PRK09427 bifunctional indole-3 47.4 30 0.00065 39.1 5.3 69 305-380 167-244 (454)
332 TIGR01303 IMP_DH_rel_1 IMP deh 46.9 36 0.00078 38.7 5.9 50 100-149 213-262 (475)
333 cd04736 MDH_FMN Mandelate dehy 46.7 1.1E+02 0.0025 33.6 9.5 96 328-445 224-320 (361)
334 PRK04147 N-acetylneuraminate l 46.6 1.4E+02 0.003 31.3 10.0 96 361-467 30-130 (293)
335 PRK07048 serine/threonine dehy 46.6 2E+02 0.0043 30.5 11.2 118 393-535 86-209 (321)
336 PLN02565 cysteine synthase 46.6 2.4E+02 0.0052 30.2 11.9 121 394-535 82-209 (322)
337 cd04740 DHOD_1B_like Dihydroor 46.3 3.6E+02 0.0079 28.1 13.7 89 344-444 88-187 (296)
338 cd02808 GltS_FMN Glutamate syn 46.0 50 0.0011 36.5 6.7 92 306-410 226-341 (392)
339 TIGR00739 yajC preprotein tran 45.9 38 0.00083 29.5 4.6 42 206-285 32-73 (84)
340 cd04727 pdxS PdxS is a subunit 45.7 4.1E+02 0.0089 28.5 14.9 139 307-465 77-247 (283)
341 cd05565 PTS_IIB_lactose PTS_II 45.7 96 0.0021 27.8 7.3 66 328-408 13-78 (99)
342 PRK05567 inosine 5'-monophosph 45.4 47 0.001 37.7 6.6 50 100-149 216-265 (486)
343 cd00953 KDG_aldolase KDG (2-ke 45.4 1.8E+02 0.004 30.3 10.5 93 308-408 24-127 (279)
344 TIGR00262 trpA tryptophan synt 45.4 3.7E+02 0.0081 27.9 15.5 156 290-465 11-196 (256)
345 TIGR03217 4OH_2_O_val_ald 4-hy 45.2 4.3E+02 0.0094 28.6 16.0 150 301-466 20-185 (333)
346 PF01116 F_bP_aldolase: Fructo 44.8 2.3E+02 0.0051 30.1 11.3 119 344-466 72-203 (287)
347 TIGR02991 ectoine_eutB ectoine 44.8 3.1E+02 0.0068 29.2 12.4 117 393-534 81-203 (317)
348 cd00950 DHDPS Dihydrodipicolin 44.7 1.1E+02 0.0024 31.7 8.8 96 362-467 28-126 (284)
349 PRK08526 threonine dehydratase 44.4 2.5E+02 0.0055 31.1 12.0 119 393-536 82-206 (403)
350 cd04731 HisF The cyclase subun 44.4 3.5E+02 0.0076 27.3 13.6 45 399-455 190-235 (243)
351 TIGR01334 modD putative molybd 44.3 78 0.0017 33.5 7.6 64 306-374 197-263 (277)
352 PRK11572 copper homeostasis pr 44.1 4E+02 0.0087 27.9 13.0 140 306-467 10-169 (248)
353 PRK13396 3-deoxy-7-phosphohept 44.0 3.4E+02 0.0073 29.9 12.5 98 333-454 155-256 (352)
354 PRK08195 4-hyroxy-2-oxovalerat 43.9 4.5E+02 0.0098 28.5 18.7 147 302-466 22-186 (337)
355 PF00701 DHDPS: Dihydrodipicol 43.4 2.7E+02 0.006 28.9 11.5 97 308-408 26-133 (289)
356 PRK07695 transcriptional regul 43.4 48 0.001 32.7 5.5 35 115-149 18-52 (201)
357 cd03332 LMO_FMN L-Lactate 2-mo 43.3 1.6E+02 0.0035 32.6 10.1 93 328-443 241-337 (383)
358 PRK11761 cysM cysteine synthas 43.3 3.4E+02 0.0074 28.6 12.2 120 394-535 78-204 (296)
359 cd01492 Aos1_SUMO Ubiquitin ac 43.2 1.5E+02 0.0032 29.5 9.0 64 333-408 78-141 (197)
360 PRK13585 1-(5-phosphoribosyl)- 43.0 3.6E+02 0.0078 27.1 12.6 128 305-453 86-232 (241)
361 TIGR00742 yjbN tRNA dihydrouri 42.9 53 0.0012 35.3 6.2 67 308-379 145-228 (318)
362 TIGR02356 adenyl_thiF thiazole 42.8 1.2E+02 0.0026 30.1 8.4 65 333-408 78-142 (202)
363 smart00729 Elp3 Elongator prot 42.8 1.9E+02 0.0041 27.1 9.5 47 106-152 92-147 (216)
364 TIGR00736 nifR3_rel_arch TIM-b 42.7 92 0.002 32.1 7.6 69 311-383 155-229 (231)
365 cd00952 CHBPH_aldolase Trans-o 42.4 1.9E+02 0.004 30.9 10.2 95 362-467 36-134 (309)
366 PF00701 DHDPS: Dihydrodipicol 42.2 1.3E+02 0.0029 31.2 9.0 168 361-551 28-203 (289)
367 cd01485 E1-1_like Ubiquitin ac 42.2 1.4E+02 0.003 29.6 8.7 66 333-408 78-144 (198)
368 PRK12344 putative alpha-isopro 42.0 6E+02 0.013 29.3 17.7 161 301-466 23-200 (524)
369 PRK07591 threonine synthase; V 41.9 2.6E+02 0.0057 31.1 11.6 119 393-535 151-284 (421)
370 PRK13399 fructose-1,6-bisphosp 41.3 2.6E+02 0.0057 30.7 11.2 122 345-466 75-224 (347)
371 TIGR02355 moeB molybdopterin s 41.2 1.3E+02 0.0029 30.8 8.6 65 333-408 81-145 (240)
372 PRK09195 gatY tagatose-bisphos 41.1 2.1E+02 0.0045 30.5 10.2 118 344-465 73-200 (284)
373 TIGR01036 pyrD_sub2 dihydrooro 40.8 3.2E+02 0.007 29.6 11.8 51 388-446 188-247 (335)
374 TIGR00222 panB 3-methyl-2-oxob 40.7 4.2E+02 0.009 28.0 12.1 131 299-443 17-180 (263)
375 PRK07114 keto-hydroxyglutarate 40.5 1.2E+02 0.0027 31.0 8.1 109 321-444 18-140 (222)
376 COG1440 CelA Phosphotransferas 40.4 1.3E+02 0.0028 27.4 7.2 63 330-407 16-78 (102)
377 PF04028 DUF374: Domain of unk 40.4 1.4E+02 0.003 25.4 7.1 58 101-165 10-68 (74)
378 PRK12857 fructose-1,6-bisphosp 40.2 2.5E+02 0.0055 29.9 10.6 118 344-465 73-200 (284)
379 TIGR00259 thylakoid_BtpA membr 39.9 2.5E+02 0.0055 29.5 10.4 97 307-409 92-207 (257)
380 TIGR00693 thiE thiamine-phosph 39.9 3.6E+02 0.0077 26.1 11.9 130 309-459 65-196 (196)
381 PRK10886 DnaA initiator-associ 39.9 3.1E+02 0.0067 27.5 10.7 93 488-586 24-144 (196)
382 TIGR01108 oadA oxaloacetate de 39.8 6.9E+02 0.015 29.4 18.5 188 301-514 17-228 (582)
383 COG3010 NanE Putative N-acetyl 39.8 1.2E+02 0.0025 31.3 7.5 119 355-530 52-185 (229)
384 PRK07535 methyltetrahydrofolat 39.7 55 0.0012 34.2 5.6 54 115-171 29-82 (261)
385 TIGR01275 ACC_deam_rel pyridox 39.6 4.7E+02 0.01 27.4 15.6 121 393-533 72-204 (311)
386 PRK06543 nicotinate-nucleotide 39.5 57 0.0012 34.7 5.6 62 306-375 202-266 (281)
387 cd08205 RuBisCO_IV_RLP Ribulos 39.4 4E+02 0.0087 29.3 12.4 150 302-465 143-307 (367)
388 PF04055 Radical_SAM: Radical 39.3 1.8E+02 0.0038 26.1 8.3 54 99-152 75-138 (166)
389 PRK00230 orotidine 5'-phosphat 39.0 1E+02 0.0022 31.4 7.3 40 425-464 189-228 (230)
390 PRK09590 celB cellobiose phosp 38.9 2.1E+02 0.0046 25.8 8.5 76 331-425 17-94 (104)
391 COG0710 AroD 3-dehydroquinate 38.9 4.7E+02 0.01 27.2 12.9 141 302-463 75-228 (231)
392 TIGR00735 hisF imidazoleglycer 38.9 1.2E+02 0.0026 31.2 7.9 85 308-405 159-253 (254)
393 PRK10411 DNA-binding transcrip 38.8 1.1E+02 0.0023 31.5 7.4 63 488-553 80-142 (240)
394 PRK10737 FKBP-type peptidyl-pr 38.8 1.1E+02 0.0023 31.0 7.2 63 179-276 50-119 (196)
395 cd02810 DHOD_DHPD_FMN Dihydroo 38.7 4.4E+02 0.0096 27.2 12.2 51 387-445 146-198 (289)
396 cd04724 Tryptophan_synthase_al 38.6 3.7E+02 0.0081 27.5 11.4 118 308-443 95-215 (242)
397 TIGR02708 L_lactate_ox L-lacta 38.3 95 0.0021 34.3 7.3 68 307-378 239-316 (367)
398 cd02940 DHPD_FMN Dihydropyrimi 38.3 2.7E+02 0.0059 29.3 10.6 48 387-444 152-201 (299)
399 PF03932 CutC: CutC family; I 38.1 4.4E+02 0.0096 26.7 12.4 142 306-469 9-170 (201)
400 PRK09140 2-dehydro-3-deoxy-6-p 38.1 1.6E+02 0.0035 29.6 8.4 65 308-377 115-182 (206)
401 TIGR01858 tag_bisphos_ald clas 38.1 2.8E+02 0.0061 29.5 10.6 114 344-466 71-199 (282)
402 PF01261 AP_endonuc_2: Xylose 38.1 89 0.0019 29.7 6.4 97 311-407 2-130 (213)
403 cd00452 KDPG_aldolase KDPG and 38.0 1.5E+02 0.0033 29.0 8.1 104 307-446 66-174 (190)
404 COG1157 FliI Flagellar biosynt 37.8 63 0.0014 36.3 5.8 89 373-470 274-366 (441)
405 cd04732 HisA HisA. Phosphorib 37.8 4.2E+02 0.0091 26.3 11.9 143 311-466 36-189 (234)
406 PTZ00344 pyridoxal kinase; Pro 37.4 2.4E+02 0.0051 29.6 9.9 111 298-409 53-182 (296)
407 cd00755 YgdL_like Family of ac 37.4 91 0.002 32.0 6.6 85 333-432 68-153 (231)
408 COG4464 CapC Capsular polysacc 37.2 21 0.00046 36.7 1.9 83 108-227 15-106 (254)
409 PRK08206 diaminopropionate amm 37.1 2.8E+02 0.0062 30.6 10.9 125 393-535 130-266 (399)
410 PRK10415 tRNA-dihydrouridine s 37.1 3.5E+02 0.0077 29.0 11.3 129 312-451 28-177 (321)
411 PRK03170 dihydrodipicolinate s 37.0 2E+02 0.0044 30.0 9.3 90 368-468 36-128 (292)
412 PRK03910 D-cysteine desulfhydr 36.9 3.1E+02 0.0068 29.2 10.9 128 393-535 80-220 (331)
413 PRK12656 fructose-6-phosphate 36.7 97 0.0021 31.8 6.7 59 310-374 119-189 (222)
414 cd03316 MR_like Mandelate race 36.7 1.7E+02 0.0036 31.3 8.9 62 100-165 126-196 (357)
415 TIGR01036 pyrD_sub2 dihydrooro 36.7 3.7E+02 0.008 29.1 11.5 89 345-445 210-319 (335)
416 cd02809 alpha_hydroxyacid_oxid 36.7 96 0.0021 32.7 6.9 67 308-378 184-260 (299)
417 PF01645 Glu_synthase: Conserv 36.6 4.2E+02 0.009 29.4 11.9 139 286-443 148-303 (368)
418 cd04735 OYE_like_4_FMN Old yel 36.6 5.8E+02 0.013 27.6 13.0 25 300-324 132-164 (353)
419 PRK01362 putative translaldola 36.6 89 0.0019 31.8 6.3 59 310-374 115-185 (214)
420 PRK12737 gatY tagatose-bisphos 36.5 3E+02 0.0065 29.3 10.5 119 344-466 73-201 (284)
421 cd02922 FCB2_FMN Flavocytochro 36.5 99 0.0021 33.7 7.1 93 307-403 224-335 (344)
422 PLN02979 glycolate oxidase 36.5 2.2E+02 0.0047 31.6 9.6 91 328-443 211-307 (366)
423 PRK05638 threonine synthase; V 36.4 2.7E+02 0.0058 31.1 10.7 116 393-533 126-252 (442)
424 KOG1816 Ubiquitin fusion-degra 36.2 1.3E+02 0.0028 32.2 7.5 46 210-290 144-189 (308)
425 TIGR00853 pts-lac PTS system, 36.1 1.7E+02 0.0037 25.8 7.3 62 331-407 19-80 (95)
426 PF04131 NanE: Putative N-acet 36.0 4.6E+02 0.0099 26.6 11.0 129 308-465 3-143 (192)
427 cd00757 ThiF_MoeB_HesA_family 35.8 1.7E+02 0.0038 29.4 8.3 66 332-408 77-142 (228)
428 cd04737 LOX_like_FMN L-Lactate 35.6 1.3E+02 0.0028 33.0 7.8 93 308-404 233-341 (351)
429 PLN02898 HMP-P kinase/thiamin- 35.5 4.1E+02 0.0089 30.2 12.1 128 312-467 362-499 (502)
430 PRK05690 molybdopterin biosynt 35.4 1.6E+02 0.0036 30.2 8.2 65 333-408 89-153 (245)
431 PRK06559 nicotinate-nucleotide 35.3 78 0.0017 33.8 5.9 63 305-375 205-270 (290)
432 PRK13509 transcriptional repre 35.1 1.2E+02 0.0027 31.2 7.3 62 488-552 80-141 (251)
433 PRK12346 transaldolase A; Prov 35.1 92 0.002 33.7 6.5 21 311-332 164-184 (316)
434 PTZ00411 transaldolase-like pr 35.0 93 0.002 33.9 6.5 21 311-332 175-195 (333)
435 PLN02535 glycolate oxidase 34.9 73 0.0016 35.1 5.8 68 308-379 235-312 (364)
436 PRK11750 gltB glutamate syntha 34.8 1.8E+02 0.0038 37.8 9.6 138 286-442 941-1095(1485)
437 PRK06106 nicotinate-nucleotide 34.8 78 0.0017 33.7 5.8 62 306-375 203-267 (281)
438 cd01487 E1_ThiF_like E1_ThiF_l 34.6 1.9E+02 0.0042 28.0 8.2 66 332-408 54-120 (174)
439 KOG2550 IMP dehydrogenase/GMP 34.6 66 0.0014 36.1 5.3 46 105-150 244-289 (503)
440 PRK08644 thiamine biosynthesis 34.4 1.9E+02 0.0041 29.1 8.3 64 334-408 85-149 (212)
441 PRK13111 trpA tryptophan synth 34.3 5.6E+02 0.012 26.7 14.6 109 288-407 11-147 (258)
442 PF09370 TIM-br_sig_trns: TIM- 34.1 1.1E+02 0.0025 32.3 6.7 62 104-168 151-223 (268)
443 COG0434 SgcQ Predicted TIM-bar 34.1 2.2E+02 0.0047 30.0 8.6 142 426-596 37-190 (263)
444 PRK02412 aroD 3-dehydroquinate 34.1 1E+02 0.0023 31.8 6.5 74 98-171 133-213 (253)
445 PF00677 Lum_binding: Lumazine 34.0 1.2E+02 0.0026 26.2 5.9 40 201-279 22-62 (85)
446 PRK08255 salicylyl-CoA 5-hydro 33.9 5.3E+02 0.011 31.1 13.2 24 301-324 540-571 (765)
447 TIGR02079 THD1 threonine dehyd 33.8 4.6E+02 0.0099 29.1 11.9 119 393-535 78-205 (409)
448 cd08567 GDPD_SpGDE_like Glycer 33.7 2.3E+02 0.0051 28.6 9.0 42 388-442 217-258 (263)
449 PRK07107 inosine 5-monophospha 33.7 73 0.0016 36.5 5.8 50 99-149 230-279 (502)
450 cd02911 arch_FMN Archeal FMN-b 33.6 1.1E+02 0.0024 31.3 6.6 60 310-376 158-222 (233)
451 PRK04885 ppnK inorganic polyph 33.5 40 0.00088 35.3 3.4 52 502-555 146-203 (265)
452 PF04452 Methyltrans_RNA: RNA 33.5 1.8E+02 0.0038 29.4 7.9 61 259-323 30-92 (225)
453 cd01563 Thr-synth_1 Threonine 33.5 5.4E+02 0.012 27.1 12.0 116 394-535 85-214 (324)
454 PLN00011 cysteine synthase 33.4 6.2E+02 0.013 27.0 13.2 122 394-536 84-212 (323)
455 PF03796 DnaB_C: DnaB-like hel 33.3 1.4E+02 0.003 30.5 7.2 75 368-443 131-212 (259)
456 PF01487 DHquinase_I: Type I 3 33.2 1.8E+02 0.004 29.0 8.0 73 98-171 111-190 (224)
457 cd05017 SIS_PGI_PMI_1 The memb 33.1 1.1E+02 0.0023 27.6 5.7 61 505-567 46-115 (119)
458 TIGR01124 ilvA_2Cterm threonin 33.1 4.7E+02 0.01 30.0 12.0 119 393-536 79-204 (499)
459 PRK02991 D-serine dehydratase; 32.9 5.3E+02 0.011 29.1 12.3 120 393-536 171-306 (441)
460 cd03174 DRE_TIM_metallolyase D 32.9 5.2E+02 0.011 26.0 11.5 134 307-457 77-239 (265)
461 PRK13938 phosphoheptose isomer 32.9 5.1E+02 0.011 25.9 12.4 92 489-586 29-148 (196)
462 PF01180 DHO_dh: Dihydroorotat 32.9 3.6E+02 0.0077 28.2 10.4 126 304-442 111-272 (295)
463 PRK05286 dihydroorotate dehydr 32.9 5.4E+02 0.012 27.8 12.0 52 387-446 190-248 (344)
464 TIGR00381 cdhD CO dehydrogenas 32.9 7.2E+02 0.016 27.8 12.9 151 304-466 200-373 (389)
465 PRK15108 biotin synthase; Prov 32.8 1.1E+02 0.0024 33.2 6.7 30 101-132 125-154 (345)
466 PLN02535 glycolate oxidase 32.6 3.2E+02 0.0068 30.2 10.2 95 328-446 211-310 (364)
467 cd06448 L-Ser-dehyd Serine deh 32.5 4E+02 0.0088 28.3 10.9 120 393-535 65-194 (316)
468 TIGR02313 HpaI-NOT-DapA 2,4-di 32.4 3.4E+02 0.0073 28.6 10.1 94 362-466 28-125 (294)
469 KOG0538 Glycolate oxidase [Ene 32.3 1.4E+02 0.003 32.5 7.0 66 308-377 235-310 (363)
470 KOG4175 Tryptophan synthase al 32.3 3.3E+02 0.0071 28.1 9.3 123 300-443 106-235 (268)
471 TIGR03844 cysteate_syn cysteat 32.2 2.8E+02 0.0061 30.8 9.9 87 486-574 99-189 (398)
472 PRK15116 sulfur acceptor prote 32.1 1.1E+02 0.0024 32.2 6.3 86 332-432 86-172 (268)
473 cd02911 arch_FMN Archeal FMN-b 32.1 4.6E+02 0.0099 26.8 10.7 93 328-444 124-221 (233)
474 PRK14041 oxaloacetate decarbox 31.9 8.2E+02 0.018 27.9 18.9 186 301-512 21-230 (467)
475 cd07941 DRE_TIM_LeuA3 Desulfob 31.8 6.1E+02 0.013 26.4 19.3 161 301-466 16-193 (273)
476 cd08564 GDPD_GsGDE_like Glycer 31.4 5.5E+02 0.012 26.3 11.4 55 389-459 210-264 (265)
477 PRK10425 DNase TatD; Provision 31.3 5.9E+02 0.013 26.4 11.6 106 298-408 9-127 (258)
478 cd07943 DRE_TIM_HOA 4-hydroxy- 31.2 6E+02 0.013 26.1 18.2 149 302-466 19-183 (263)
479 PRK07807 inosine 5-monophospha 31.1 73 0.0016 36.3 5.2 47 103-149 218-264 (479)
480 cd04738 DHOD_2_like Dihydrooro 31.0 6.9E+02 0.015 26.7 13.5 52 387-446 181-239 (327)
481 CHL00162 thiG thiamin biosynth 30.6 3.3E+02 0.0071 28.9 9.3 53 401-465 188-240 (267)
482 PF00455 DeoRC: DeoR C termina 30.6 1.6E+02 0.0034 28.3 6.7 62 488-552 6-68 (161)
483 PRK11858 aksA trans-homoaconit 30.5 7.4E+02 0.016 27.2 12.7 137 306-458 77-238 (378)
484 PRK13957 indole-3-glycerol-pho 30.5 1.4E+02 0.003 31.2 6.7 69 305-380 159-236 (247)
485 TIGR02311 HpaI 2,4-dihydroxyhe 30.0 3.8E+02 0.0082 27.7 9.8 87 335-443 3-91 (249)
486 PRK08673 3-deoxy-7-phosphohept 30.0 5.3E+02 0.011 28.2 11.2 106 329-458 143-251 (335)
487 PLN02417 dihydrodipicolinate s 29.9 3.9E+02 0.0083 28.0 10.0 89 368-466 36-126 (280)
488 PRK01130 N-acetylmannosamine-6 29.9 1.4E+02 0.003 29.9 6.4 64 308-376 130-204 (221)
489 COG0159 TrpA Tryptophan syntha 29.8 5.5E+02 0.012 27.2 10.9 114 310-443 115-233 (265)
490 TIGR00046 RNA methyltransferas 29.7 2.9E+02 0.0063 28.2 8.9 61 259-323 45-107 (240)
491 COG0646 MetH Methionine syntha 29.5 1.7E+02 0.0036 31.7 7.1 63 99-163 113-193 (311)
492 PF04312 DUF460: Protein of un 29.5 50 0.0011 31.6 2.9 29 391-425 65-93 (138)
493 PF03437 BtpA: BtpA family; I 29.3 2.9E+02 0.0062 29.0 8.8 45 426-470 32-79 (254)
494 TIGR00737 nifR3_yhdG putative 29.2 7.1E+02 0.015 26.4 14.9 144 298-452 14-176 (319)
495 PRK09196 fructose-1,6-bisphosp 29.2 4.1E+02 0.009 29.2 10.3 122 345-466 75-224 (347)
496 COG0673 MviM Predicted dehydro 29.1 1.7E+02 0.0037 30.5 7.3 88 356-467 54-144 (342)
497 PRK08246 threonine dehydratase 29.0 7.2E+02 0.016 26.3 12.6 119 392-535 81-202 (310)
498 PRK15424 propionate catabolism 28.9 3E+02 0.0065 31.9 9.7 160 283-452 77-257 (538)
499 TIGR00737 nifR3_yhdG putative 28.8 7.2E+02 0.016 26.3 14.1 84 345-443 131-222 (319)
500 PF01081 Aldolase: KDPG and KH 28.8 2.1E+02 0.0045 28.9 7.4 41 390-444 89-129 (196)
No 1
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=1.1e-130 Score=1074.06 Aligned_cols=467 Identities=46% Similarity=0.712 Sum_probs=438.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCC
Q 007349 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (607)
Q Consensus 98 ~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 177 (607)
+|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++++ ++++||+||||||||+|.+++
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~ 102 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKG-FAVAVMMDTEGSEIHMGDLGG 102 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CceEEEecCCCCceEEEecCC
Confidence 7899999999999999999999999999999999999999999999999999999998 999999999999999999964
Q ss_pred --cEEecCCCEEEEEecCCCC--CcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccc
Q 007349 178 --PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCF 253 (607)
Q Consensus 178 --~i~l~~G~~v~l~~~~~~~--~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 253 (607)
++.|++||+|.|+.+...+ +++.+++||++|++.+++||.||+|
T Consensus 103 ~~~i~l~~G~~v~lt~~~~~g~~~~~~i~v~y~~l~~~v~~Gd~Ilid-------------------------------- 150 (509)
T PLN02762 103 ASSAKAEDGEEWTFTVRKFDGSRPEFTIQVNYDGFAEDVKVGDELVVD-------------------------------- 150 (509)
T ss_pred CccEEecCCCEEEEeCCccCCCCCCcEEeechHHHHHhcCCCCEEEEe--------------------------------
Confidence 6999999999999764334 3578999999999999999999999
Q ss_pred cccccCceEEEEEEEEeCCeEEEEEEeCcEecCCCcccc-------CCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccC
Q 007349 254 LLSIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNV-------RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFV 326 (607)
Q Consensus 254 ~~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn~-------p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV 326 (607)
||+|.|+|.+++++.++|+|.+||.|+++||||+ ||+.+++|.||+||++||.||+++|+|||++|||
T Consensus 151 -----DG~i~l~V~~~~~~~v~~~v~~~G~l~~~KgvNl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFV 225 (509)
T PLN02762 151 -----GGMVRFEVIEKIGPDVKCKCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFV 225 (509)
T ss_pred -----CCEEEEEEEEEECCEEEEEEEeCcEEcCCCceeeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCC
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhcCC--CceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCC
Q 007349 327 KDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKP 404 (607)
Q Consensus 327 ~sa~dv~~vr~~l~~~~~--~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKP 404 (607)
++++||.++|+++.+.|. +++||||||+++|++|||||++++|||||||||||+|+|+++||.+||+||++|+++|||
T Consensus 226 r~a~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKP 305 (509)
T PLN02762 226 KSAEVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKP 305 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCC
Confidence 999999999999998765 799999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCC-----Cc
Q 007349 405 VIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPP-----TQ 479 (607)
Q Consensus 405 vivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~-----~~ 479 (607)
||+||||||||+++|.|||||++||||||.||+|++|||+|||+|+||+|||++|++||+++|+++.+...+. ..
T Consensus 306 VIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~ 385 (509)
T PLN02762 306 VIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQL 385 (509)
T ss_pred EEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998642211111 11
Q ss_pred cccCCCChhHHHHHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccCCCH
Q 007349 480 FSAHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDV 558 (607)
Q Consensus 480 ~~~~~~~~~~~ia~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~d~ 558 (607)
......+..+++|.+|+++|+.++| +||+||+||+||+++|||||.+||||+|++++++|+|+|+|||+|+++++..+.
T Consensus 386 ~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~tA~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~ 465 (509)
T PLN02762 386 SSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDFSDDM 465 (509)
T ss_pred ccccccchHHHHHHHHHHHHhhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCH
Confidence 1111125679999999999999999 899999999999999999999999999999999999999999999999888899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEeC
Q 007349 559 EETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKVQ 606 (607)
Q Consensus 559 d~~i~~Al~~ake~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V~ 606 (607)
+++++.+++++++.|++++||.||+++|. |. +|.||+|+|++||
T Consensus 466 ~~~~~~~~~~~~~~g~~~~GD~VVv~~g~--~~--~g~tn~i~v~~v~ 509 (509)
T PLN02762 466 ESNLNKTFSLLKARGMIKSGDLVIAVSDL--TP--SSMLQSIQVRNVP 509 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEeCC--CC--CCCceEEEEEEcC
Confidence 99999999999999999999999999984 43 8999999999986
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=1.8e-130 Score=1072.12 Aligned_cols=474 Identities=37% Similarity=0.572 Sum_probs=445.5
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEee
Q 007349 94 GPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSG 173 (607)
Q Consensus 94 ~~~~~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g 173 (607)
.+..+|||||||||||+++++|+|++|+++||||||||||||++++|+++++++|+++++..+++++||+||||||||+|
T Consensus 33 ~~~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~iaIl~Dl~GPkiR~g 112 (513)
T PTZ00066 33 NDLRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLGILLDTKGPEIRTG 112 (513)
T ss_pred CcccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceEEEeeCCCCceeec
Confidence 34558999999999999999999999999999999999999999999999999999999963399999999999999999
Q ss_pred cCCC--cEEecCCCEEEEEecC-CCCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCc
Q 007349 174 DVPQ--PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLT 250 (607)
Q Consensus 174 ~~~~--~i~l~~G~~v~l~~~~-~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 250 (607)
.+++ ++.|++||.|+|+.+. ..++++.|++||++|++.+++||+||+|
T Consensus 113 ~~~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~Ilid----------------------------- 163 (513)
T PTZ00066 113 FLKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIA----------------------------- 163 (513)
T ss_pred ccCCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEe-----------------------------
Confidence 9964 6999999999999873 4567788999999999999999999999
Q ss_pred ccccccccCceEEEEEEEEeCCeEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHH-HhhHhcCCcEEEeccCCCh
Q 007349 251 SCFLLSIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDA 329 (607)
Q Consensus 251 ~~~~~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI-~~al~~gvD~I~~SfV~sa 329 (607)
||+|.|+|.+++++.++|+|++||.|+++||||+||..+++|.||++|++|| +|++++|+|||++|||+++
T Consensus 164 --------DG~i~l~V~~~~~~~v~~~v~~gG~l~~~Kgvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a 235 (513)
T PTZ00066 164 --------DGSLSCKVLEVHDDYIITKVLNNATIGERKNMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSA 235 (513)
T ss_pred --------CCEEEEEEEEEECCEEEEEEEeCcEEcCCcccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 9999999999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Q 007349 330 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 409 (607)
Q Consensus 330 ~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaT 409 (607)
+||.++|+++++.|.+++|||||||++|++|||||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+||
T Consensus 236 ~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvAT 315 (513)
T PTZ00066 236 DDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITAT 315 (513)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEec
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccc--cCCCCh
Q 007349 410 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFS--AHKSHM 487 (607)
Q Consensus 410 qmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~ 487 (607)
||||||+++|.|||||++||||||.||+|++|||+|||+|+||+|||++|++||+++|+.+++..++..... ....+.
T Consensus 316 QmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ 395 (513)
T PTZ00066 316 QMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSV 395 (513)
T ss_pred hhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCch
Confidence 999999999999999999999999999999999999999999999999999999999987654333321111 011235
Q ss_pred hHHHHHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccCCCHHHHHHHHH
Q 007349 488 GDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAI 566 (607)
Q Consensus 488 ~~~ia~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~d~d~~i~~Al 566 (607)
.+++|.+|+++|+.+++ +||+||+||+||+++|||||.+||||+|++++++|+|+|+|||+|++++...+.+++++.|+
T Consensus 396 ~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP~~pIia~t~~~~~~R~L~L~wGV~p~~~~~~~~~~~~i~~a~ 475 (513)
T PTZ00066 396 QEAVARSAVETAEDINAKLIIALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVTTYVVNSFQGTDVVIRNAI 475 (513)
T ss_pred hhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEecCCCCHHHHHHHHH
Confidence 78999999999999999 89999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEeC
Q 007349 567 KLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKVQ 606 (607)
Q Consensus 567 ~~ake~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V~ 606 (607)
+++++.|++++||.||+++|. |.+..|.||+++|.+||
T Consensus 476 ~~~~~~g~~~~GD~vVv~~g~--~~~~~g~tn~irv~~v~ 513 (513)
T PTZ00066 476 ALAKERGLVESGDSAIAVHGV--KEEVAGSSNLMKVVKIP 513 (513)
T ss_pred HHHHHcCCCCCCCEEEEEeCC--CCCCCCCCeEEEEEEcC
Confidence 999999999999999999994 65678999999999987
No 3
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1.5e-129 Score=1073.30 Aligned_cols=518 Identities=79% Similarity=1.150 Sum_probs=486.7
Q ss_pred ccceeeeeeccCCCCcccchhhhhhhhhcccCCCCCCCCCccCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEE
Q 007349 51 RFSIRSMRISHDNHAPKISLFEESLSSIFELPNGQCTPGKGVVGPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARL 130 (607)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~TKIi~TiGPss~~~e~l~~li~aGm~v~Ri 130 (607)
+.+...+++||+|+. .+|.++.++.....+++..+.+++|..|+.+|||||||||||+|+++|+|++|+++|||||||
T Consensus 64 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~Rl 141 (581)
T PLN02623 64 SQETEVIPVSPEDGG--ANFVEDNEEVLLEIQQLGETAVGMWSKPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARL 141 (581)
T ss_pred ccCcceeeccccccc--cccccccccccchhhHHHhhhhhhcCCCCCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEE
Confidence 344466889999988 667888888888888888788899999999999999999999999999999999999999999
Q ss_pred ecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCCcEEecCCCEEEEEecCCCCCcceEecccccccc
Q 007349 131 NMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVN 210 (607)
Q Consensus 131 N~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~i~l~~G~~v~l~~~~~~~~~~~i~v~~~~~~~ 210 (607)
|||||++++|+++++++|+++++.++++++||+||||||||+|.+++++.|++||+|.|+.+...++++.+++||++|++
T Consensus 142 NfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~~~~i~l~~G~~v~lt~~~~~g~~~~i~v~y~~l~~ 221 (581)
T PLN02623 142 NMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLEEGQEFTFTIKRGVSTEDCVSVNYDDFVN 221 (581)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccCCCCEEecCCCEEEEecCccCCCCCEEeechHHHHh
Confidence 99999999999999999999999766999999999999999999988999999999999988667788899999999999
Q ss_pred ccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccccccccCceEEEEEEEEeCCeEEEEEEeCcEecCCCcc
Q 007349 211 DVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLLSIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHL 290 (607)
Q Consensus 211 ~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgv 290 (607)
.+++||+||+| ||+|.|+|++++++.++|+|++||.|+++|||
T Consensus 222 ~v~~Gd~Ilid-------------------------------------DG~i~l~V~~~~~~~v~~~V~~gG~L~s~Kgv 264 (581)
T PLN02623 222 DVEVGDMLLVD-------------------------------------GGMMSLAVKSKTSDSVKCEVVDGGELKSRRHL 264 (581)
T ss_pred hCCCCCEEEEe-------------------------------------CCeEEEEEEEEECCEEEEEEEeceEecCCCCC
Confidence 99999999999 99999999999999999999999999999999
Q ss_pred ccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccE
Q 007349 291 NVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDG 370 (607)
Q Consensus 291 n~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDG 370 (607)
|+||+.+++|.||+||++||+|++++|+|||++|||++++||.++++|+++.|.++.||+||||++||+|+|||++.+||
T Consensus 265 Nlpg~~~~lp~lTekD~~di~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~Dg 344 (581)
T PLN02623 265 NVRGKSATLPSITEKDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDG 344 (581)
T ss_pred CCCCCcCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCC
Q 007349 371 AMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 450 (607)
Q Consensus 371 ImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~ 450 (607)
|||||||||+++|+++|+.+|++|+++|+++|||+|+||||||||+.++.|||||++|++|++.+|+|++||++||+.|+
T Consensus 345 ImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~ 424 (581)
T PLN02623 345 AMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 424 (581)
T ss_pred EEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCChHHHHHHHhcCCCCeEEE
Q 007349 451 FPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSSTIFA 530 (607)
Q Consensus 451 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~sG~tA~~is~~RP~~PIIA 530 (607)
||+|||++|++||.++|+.+++...+..+....+.+..+++|.+|+++|+.++++||+||+||+||+++|||||.+||||
T Consensus 425 yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~Ivv~T~sG~tA~~lSr~RP~~pI~a 504 (581)
T PLN02623 425 FPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILLSHYRPSGTIFA 504 (581)
T ss_pred CHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCcEEEECCCcHHHHHHHhhCCCCCEEE
Confidence 99999999999999999875443222111111223577999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHhhhccCCCeEEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEeCC
Q 007349 531 FTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKVQG 607 (607)
Q Consensus 531 vT~d~~taRrL~L~wGV~Pi~~~~~~d~d~~i~~Al~~ake~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V~~ 607 (607)
+|++++++|||+|+|||+|+++++..+.+++++.|++++++.|++++||.||+++|+.+|.|..|.||+++|++|.+
T Consensus 505 vT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~GD~vviv~g~~~p~~~~g~tn~i~V~~v~~ 581 (581)
T PLN02623 505 FTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKEGEEVALVQSGRQPIWRSESTHHIQVRKVQA 581 (581)
T ss_pred ECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeccCCCCCCCCCCeEEEEEEeeC
Confidence 99999999999999999999998888999999999999999999999999999997555778889999999999853
No 4
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=4.1e-128 Score=1048.07 Aligned_cols=468 Identities=35% Similarity=0.581 Sum_probs=441.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCC
Q 007349 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (607)
Q Consensus 97 ~~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~ 176 (607)
++|||||||||||+++++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++|++||||||||+|.++
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GpkiR~g~~~ 81 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETG-RPIGILADLQGPKLRLGRFA 81 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeeEEEeCCCCceeccccC
Confidence 47899999999999999999999999999999999999999999999999999999998 99999999999999999996
Q ss_pred C-cEEecCCCEEEEEecCCCCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccccc
Q 007349 177 Q-PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLL 255 (607)
Q Consensus 177 ~-~i~l~~G~~v~l~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (607)
. ++.|++||+|.|+.+...++++.|+++|++|++.+++||+||+|
T Consensus 82 ~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~G~~I~id---------------------------------- 127 (476)
T PRK06247 82 DGKVQLANGQTFRLDVDDAPGDHDRVSLPHPEIAAALKPGDRLLVD---------------------------------- 127 (476)
T ss_pred CCcEeccCCCEEEEEecccCCCCCEeecChhHhHhhcCCCCEEEEe----------------------------------
Confidence 4 79999999999998865677889999999999999999999999
Q ss_pred cccCceEEEEEEEEeCCeEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHH
Q 007349 256 SIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHEL 335 (607)
Q Consensus 256 s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~v 335 (607)
||+|.|+|++++++.++|+|++||.|+++||||+||..+++|.||+||++||.||+++|+|||++|||++++||.++
T Consensus 128 ---DG~i~l~V~~~~~~~i~~~v~~~G~l~~~Kgvn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~ 204 (476)
T PRK06247 128 ---DGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSLPGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEV 204 (476)
T ss_pred ---CCeEEEEEEEEECCEEEEEEEeCcEEcCCCccccCCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhh
Q 007349 336 KDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESM 415 (607)
Q Consensus 336 r~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM 415 (607)
|+++. .++.|||||||++|++|+|+|++++|||||||||||+++|+++|+.+|++|+++|+++|||+|+||||||||
T Consensus 205 r~~l~---~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM 281 (476)
T PRK06247 205 RKIIG---GRVPVMAKIEKPQAIDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESM 281 (476)
T ss_pred HHHhh---hcCeEEEEECCHHHHHhHHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHh
Confidence 99994 478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHH
Q 007349 416 IDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHS 495 (607)
Q Consensus 416 ~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a 495 (607)
+++|.|||||++|+|||+.||+|++|||+|||+|+||+|||++|++||+++|+++++...+.........+..+++|.+|
T Consensus 282 ~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sa 361 (476)
T PRK06247 282 IENPVPTRAEVSDVATAVLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQRPQPEATKRDAISYAA 361 (476)
T ss_pred hcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCCHHHHHHHHHHHHHHHhhccchhhhhhhcccccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998754432221111111135678999999
Q ss_pred HHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccCCCHHHHHHHHHHHHHHcCC
Q 007349 496 TTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNL 574 (607)
Q Consensus 496 ~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~d~d~~i~~Al~~ake~Gl 574 (607)
+++|+.+++ +||+||+||+||+++|||||.|||||+|++++++|+|+|+|||+|++++...+.++++..|++++++.|+
T Consensus 362 ~~~A~~l~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~ 441 (476)
T PRK06247 362 RDIAERLDLAALVAYTSSGDTALRAARERPPLPILALTPNPETARRLALTWGVHCVVVDDARDTDDMVRRADRIALAEGF 441 (476)
T ss_pred HHHHHhCCCCEEEEEcCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCCeeEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999 8999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCCCEEEEEecCCCCCCCCCCccEEEEEEeCC
Q 007349 575 VTKGEFVTLVQSGAQPIWRQESTHHIQVRKVQG 607 (607)
Q Consensus 575 l~~GD~VVvvsg~~~p~~~~G~tntI~V~~V~~ 607 (607)
+++||.||+++|. |.+..|.||+++|.+|++
T Consensus 442 ~~~Gd~vvv~~g~--~~~~~g~tn~i~v~~v~~ 472 (476)
T PRK06247 442 YKRGDRVVIVAGV--PPGTPGSTNMLRIAYIGE 472 (476)
T ss_pred CCCCCEEEEEeCC--CCCCCCCCeEEEEEEeCC
Confidence 9999999999984 667789999999999853
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=6.6e-128 Score=1047.22 Aligned_cols=465 Identities=39% Similarity=0.639 Sum_probs=439.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCC
Q 007349 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (607)
Q Consensus 98 ~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 177 (607)
+|||||||||||+|+++|+|++|+++||||||||||||++++|.++|+++|+++++++ ++++|++||||||||+|.+++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~Il~Dl~GPkiR~g~~~~ 79 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTG-KKAAILLDTKGPEIRTMKLEG 79 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeCCCCceeccccCC
Confidence 5899999999999999999999999999999999999999999999999999999998 999999999999999999964
Q ss_pred --cEEecCCCEEEEEecC-CCCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCccccc
Q 007349 178 --PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFL 254 (607)
Q Consensus 178 --~i~l~~G~~v~l~~~~-~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 254 (607)
++.|++||.|.|+.+. ..++.+.|+++|++|++.+++||.||+|
T Consensus 80 ~~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~id--------------------------------- 126 (470)
T PRK09206 80 GNDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVD--------------------------------- 126 (470)
T ss_pred CCeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEe---------------------------------
Confidence 5999999999999774 3466778999999999999999999999
Q ss_pred ccccCceEEEEEEEEeCCeEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHH
Q 007349 255 LSIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHE 334 (607)
Q Consensus 255 ~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~ 334 (607)
||+|.|+|.+++++.++|+|++||.|+++||||+||..+++|.||+||++||+|++++|+|||++|||++++||.+
T Consensus 127 ----DG~i~l~V~~~~~~~v~~~v~~~G~l~s~Kgvn~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~ 202 (470)
T PRK09206 127 ----DGLIGMEVTAITGNEVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLE 202 (470)
T ss_pred ----CCEEEEEEEEEeCCEEEEEEEECCEecCCCceeccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC-CCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccch
Q 007349 335 LKDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLE 413 (607)
Q Consensus 335 vr~~l~~~~-~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLe 413 (607)
+++|+.+.| .++.|||||||++|++|+|||++++|||||||||||+|+|.++||.+||+|+++|+++|||||+||||||
T Consensus 203 ~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLe 282 (470)
T PRK09206 203 IREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLD 282 (470)
T ss_pred HHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHH
Confidence 999999887 5899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHH
Q 007349 414 SMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAF 493 (607)
Q Consensus 414 SM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~ 493 (607)
||+++|.|||||++|+|||+.||+|++|||+|||+|+||+|||++|++||+++|+++++...+. ......+..+++|.
T Consensus 283 SM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~~~~~--~~~~~~~~~~~ia~ 360 (470)
T PRK09206 283 SMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLESN--NDNRKLRITEAVCR 360 (470)
T ss_pred HHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhh--ccccCCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998654321111 10111357899999
Q ss_pred HHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccCCCHHHHHHHHHHHHHHc
Q 007349 494 HSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDK 572 (607)
Q Consensus 494 ~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~d~d~~i~~Al~~ake~ 572 (607)
+|+++|+.+++ +||+||+||+||+++|||||.+||||+|++++++|+|+|+|||+|++++...+.++++..|++++++.
T Consensus 361 sa~~~A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~ 440 (470)
T PRK09206 361 GAVETAEKLDAPLIVVATQGGKSARSVRKYFPDATILALTTNEKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQS 440 (470)
T ss_pred HHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 99999999999 89999999999999999999999999999999999999999999999988889999999999999999
Q ss_pred CCCCCCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 007349 573 NLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKV 605 (607)
Q Consensus 573 Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V 605 (607)
|++++||.||+++|. + ...|+||+++|.++
T Consensus 441 g~~~~Gd~vvv~~g~--~-~~~g~tn~i~v~~~ 470 (470)
T PRK09206 441 GLAQKGDVVVMVSGA--L-VPSGTTNTASVHVL 470 (470)
T ss_pred CCCCCCCEEEEEeCC--C-CCCCCCeEEEEEEC
Confidence 999999999999994 4 56799999999864
No 6
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4e-127 Score=1035.75 Aligned_cols=470 Identities=44% Similarity=0.705 Sum_probs=444.3
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecC
Q 007349 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (607)
Q Consensus 96 ~~~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~ 175 (607)
.++|||||||||||+|+++|+|++|+++||||+|||||||++++|.+.++++|+++++++ +|++||+||||||||+|.+
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~-~~vaIl~DlkGPkIR~g~~ 80 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLG-RPVAILLDLKGPKIRTGKF 80 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhC-CceEEEEcCCCCcceeEec
Confidence 468999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred C-CcEEecCCCEEEEEecCC--CCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCccc
Q 007349 176 P-QPIILKEGQEFNFTIKRG--VSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSC 252 (607)
Q Consensus 176 ~-~~i~l~~G~~v~l~~~~~--~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 252 (607)
. +.+.|++||.|+|+.+.. .++.+.++++|++|+++|++||+||+|
T Consensus 81 ~~~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlD------------------------------- 129 (477)
T COG0469 81 KGGAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLD------------------------------- 129 (477)
T ss_pred CCCcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEe-------------------------------
Confidence 6 469999999999998865 345688999999999999999999999
Q ss_pred ccccccCceEEEEEEEEeCCeEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHH
Q 007349 253 FLLSIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVV 332 (607)
Q Consensus 253 ~~~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv 332 (607)
||+++|+|.+++++.++|+|.+||.|+++||||+||..+++|+||+||++||.|++++|+|||++|||++++|+
T Consensus 130 ------DG~i~l~V~~v~~~~v~~~v~n~G~l~~~KgvN~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv 203 (477)
T COG0469 130 ------DGKIELRVVEVDGDAVITRVLNGGVLSSNKGVNLPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDV 203 (477)
T ss_pred ------CCeeEEEEEEeeCCEEEEEEEeCCCccCCCceecCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCC-ceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccc
Q 007349 333 HELKDYLKSCNAD-IHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM 411 (607)
Q Consensus 333 ~~vr~~l~~~~~~-i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqm 411 (607)
.++|+++.+.+.. ++||||||+++||+|||||+++||||||||||||+|+|.++||.+||+||++|+.+|||||+||||
T Consensus 204 ~~~R~~l~~~~~~~~~iiaKIE~~eav~NldeIi~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQM 283 (477)
T COG0469 204 EEVREILAETGGRDVKIIAKIENQEAVDNLDEIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQM 283 (477)
T ss_pred HHHHHHHHHhCCCCceEEEeecCHHHHhHHHHHHHhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeecc
Confidence 9999999876655 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHH
Q 007349 412 LESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMF 491 (607)
Q Consensus 412 LeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~i 491 (607)
||||+.+|.|||||++|||||+.||+|++|||+|||.|+||+|||++|++||.++|+.+.+.+.+.........+..+++
T Consensus 284 LeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~e~i 363 (477)
T COG0469 284 LESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFRVDPPDSSITEAI 363 (477)
T ss_pred HHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcCCCHHHHHHHHHHHHHHHhcccchhhhhhhccccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988633222111111234578999
Q ss_pred HHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEec-cCCCHHHHHHHHHHHH
Q 007349 492 AFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQ-FSDDVEETFSRAIKLL 569 (607)
Q Consensus 492 a~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~-~~~d~d~~i~~Al~~a 569 (607)
+.+++.+|+.+++ +||++|.||+||+++|||||.+||||+|++++++|+|+|+|||+|++++ +..+.++++..+++.+
T Consensus 364 a~aa~~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~pIia~t~~~~v~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~ 443 (477)
T COG0469 364 ALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPEAPIIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKL 443 (477)
T ss_pred HHHHHHHHHhcCCcEEEEEcCCCHHHHHHhcCCCCCcEEEECCCHHHHhhhceeecceeEEecCCCCcHHHHHHHHHHHH
Confidence 9999999999999 8999999999999999999999999999999999999999999999998 6889999999999999
Q ss_pred HHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 007349 570 MDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKV 605 (607)
Q Consensus 570 ke~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V 605 (607)
.+.|++++||.|++++| .|.+..|.||++||++|
T Consensus 444 ~~~g~~~~gD~vvit~G--~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 444 LESGLVKKGDLVVITAG--VPMGTVGTTNTIKVLTV 477 (477)
T ss_pred HhcCcccCCCEEEEecC--cccccCCCceeEEEEeC
Confidence 99999999999999999 47789999999999875
No 7
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=9.8e-127 Score=1043.52 Aligned_cols=466 Identities=37% Similarity=0.584 Sum_probs=436.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecC
Q 007349 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (607)
Q Consensus 96 ~~~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~ 175 (607)
.++|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++.+ ++++||+||||||||+|.+
T Consensus 18 ~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g-~~i~Il~Dl~GPkIR~g~~ 96 (511)
T PLN02461 18 LRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTG-ILCAVMLDTKGPEIRTGFL 96 (511)
T ss_pred ccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEeeCCCCceecccc
Confidence 458999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC--cEEecCCCEEEEEecC-CCCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCccc
Q 007349 176 PQ--PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSC 252 (607)
Q Consensus 176 ~~--~i~l~~G~~v~l~~~~-~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 252 (607)
+. ++.|++||.|.|+.+. ..++++.|+++|++|++.+++||+||+|
T Consensus 97 ~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~Ilid------------------------------- 145 (511)
T PLN02461 97 KDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCA------------------------------- 145 (511)
T ss_pred CCCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEe-------------------------------
Confidence 64 5999999999999873 3567788999999999999999999999
Q ss_pred ccccccCceEEEEEEEEe--CCeEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHH-HhhHhcCCcEEEeccCCCh
Q 007349 253 FLLSIQGGMMSLAVKSKT--KDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDA 329 (607)
Q Consensus 253 ~~~s~~DG~i~l~V~~~~--~~~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI-~~al~~gvD~I~~SfV~sa 329 (607)
||+|.|+|.+++ ++.++|+|.+||.|+++||||+||..+++|.||+||++|| +||+++|+|||++|||+++
T Consensus 146 ------DG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a 219 (511)
T PLN02461 146 ------DGTITLTVLSCDVEAGTVRCRCENSAMLGERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKG 219 (511)
T ss_pred ------CCEEEEEEEEEecCCCEEEEEEecCcEecCCceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCH
Confidence 999999999987 6899999999999999999999999999999999999998 7999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Q 007349 330 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 409 (607)
Q Consensus 330 ~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaT 409 (607)
+||.++|+++.+.+.+++|||||||++|++||+||++++|||||||||||+|+|+++||.+||+||+.|+++|||||+||
T Consensus 220 ~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvAT 299 (511)
T PLN02461 220 SDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTAT 299 (511)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEee
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccc--cCCCCh
Q 007349 410 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFS--AHKSHM 487 (607)
Q Consensus 410 qmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~ 487 (607)
||||||+++|.|||||++|+|||+.||+|++|||+|||+|+||+|||++|++||+++|+.+++..+|..... ....+.
T Consensus 300 QmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ 379 (511)
T PLN02461 300 QMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSP 379 (511)
T ss_pred hhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCCh
Confidence 999999999999999999999999999999999999999999999999999999999987654333322111 011246
Q ss_pred hHHHHHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCC-------------HHHHhhhccCCCeEEEEec
Q 007349 488 GDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQ-------------ERIKQRLVLYQGVMPIYMQ 553 (607)
Q Consensus 488 ~~~ia~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d-------------~~taRrL~L~wGV~Pi~~~ 553 (607)
.+++|.+|+++|+++++ +|||||+||+||+++|||||.|||||+|++ ++++|+|+|+|||+|++++
T Consensus 380 ~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~ 459 (511)
T PLN02461 380 LESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAE 459 (511)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEec
Confidence 79999999999999999 899999999999999999999999999966 9999999999999999876
Q ss_pred c------CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEeC
Q 007349 554 F------SDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKVQ 606 (607)
Q Consensus 554 ~------~~d~d~~i~~Al~~ake~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V~ 606 (607)
. ..+.+++++.|++++++.|++++||.||+++| .|.||+++|..+.
T Consensus 460 ~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~~-------~g~tn~i~v~~v~ 511 (511)
T PLN02461 460 GSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVALHR-------IGGASVIKILTVK 511 (511)
T ss_pred ccccccccCCHHHHHHHHHHHHHHcCCCCCcCEEEEEec-------CCCCcEEEEEEeC
Confidence 4 56899999999999999999999999999987 3789999999874
No 8
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=1.6e-125 Score=1054.02 Aligned_cols=469 Identities=39% Similarity=0.644 Sum_probs=444.1
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecC
Q 007349 96 NARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDV 175 (607)
Q Consensus 96 ~~~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~ 175 (607)
+.+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ +|++||+||||||||+|.+
T Consensus 5 ~~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~-~~i~i~~Dl~GpkiR~g~~ 83 (590)
T PRK06354 5 DLMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLG-KTVGILQDLQGPKIRLGRF 83 (590)
T ss_pred CCCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCEEEEeeCCCCceecccc
Confidence 457999999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CC-cEEecCCCEEEEEecCCCCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCccccc
Q 007349 176 PQ-PIILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFL 254 (607)
Q Consensus 176 ~~-~i~l~~G~~v~l~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 254 (607)
+. ++.|++||+|.|+.+...++++.|+++|++|++.+++||.||+|
T Consensus 84 ~~~~i~l~~G~~~~l~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~id--------------------------------- 130 (590)
T PRK06354 84 EDGPIELKTGDEFILTSREVLGTQEKFSVTYDGLADEVPVGSRILLD--------------------------------- 130 (590)
T ss_pred CCCcEEecCCCEEEEEecccCCCCCEEeechHHHHhhcCCCCEEEEe---------------------------------
Confidence 64 79999999999998865677889999999999999999999999
Q ss_pred ccccCceEEEEEEEEe--CCeEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHH
Q 007349 255 LSIQGGMMSLAVKSKT--KDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVV 332 (607)
Q Consensus 255 ~s~~DG~i~l~V~~~~--~~~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv 332 (607)
||+|.|+|.+++ ++.++|+|++||.|+++||||+||..+++|.||+||++||+|++++++|||++|||++++||
T Consensus 131 ----DG~i~l~V~~~~~~~~~v~~~v~~~g~l~~~Kgvn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv 206 (590)
T PRK06354 131 ----DGLIELEVEEVDKADGELHCKVLVGGVLSNKKGVNFPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDV 206 (590)
T ss_pred ----CCeEEEEEEEEEcCCCEEEEEEEeCeEECCCCcccccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHH
Confidence 999999999988 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-hcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccc
Q 007349 333 HELKDYLK-SCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM 411 (607)
Q Consensus 333 ~~vr~~l~-~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqm 411 (607)
.++++|+. ..+.++.|||||||++|++|+|||++++|||||||||||+++|.++|+.+|++|+++|+++|||||+||||
T Consensus 207 ~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqm 286 (590)
T PRK06354 207 LEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQM 286 (590)
T ss_pred HHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchh
Confidence 99999994 45889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHH
Q 007349 412 LESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMF 491 (607)
Q Consensus 412 LeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~i 491 (607)
||||+++|.|||||++|||||+.||+|++|||+|||+|+||+|||++|++||+++|+.+++..++..... ...+..+++
T Consensus 287 LeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~-~~~~~~~~i 365 (590)
T PRK06354 287 LDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPE-FTTTITNAI 365 (590)
T ss_pred HHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccc-cCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987654433222111 123567899
Q ss_pred HHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccCCCHHHHHHHHHHHHH
Q 007349 492 AFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLM 570 (607)
Q Consensus 492 a~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~d~d~~i~~Al~~ak 570 (607)
|.+|+++|+.+++ +||+||+||+||+++|||||.+||||+|++++++|||+|+|||+|++++...+.+++++.++++++
T Consensus 366 a~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~ 445 (590)
T PRK06354 366 SQAVSHIALQLDAAAIVTLTKSGATARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQ 445 (590)
T ss_pred HHHHHHHHhhcCCCEEEEECCChHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9999999999999 899999999999999999999999999999999999999999999999888889999999999999
Q ss_pred HcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 007349 571 DKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKV 605 (607)
Q Consensus 571 e~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V 605 (607)
+.|++++||.||+++| .|.+..|.||++||++|
T Consensus 446 ~~g~~~~gd~vv~~~g--~~~~~~g~tn~~~v~~v 478 (590)
T PRK06354 446 ESGLLKQGDLVVITAG--TLVGESGSTDLMKVHVV 478 (590)
T ss_pred HcCCCCCCCEEEEEeC--CCCCcCCCceeEEEEEe
Confidence 9999999999999998 46677899999999988
No 9
>PLN02765 pyruvate kinase
Probab=100.00 E-value=3.7e-125 Score=1031.51 Aligned_cols=471 Identities=27% Similarity=0.460 Sum_probs=432.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCC-
Q 007349 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP- 176 (607)
Q Consensus 98 ~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~- 176 (607)
.|||||||||||+|+++|+|++|+++||||||||||||++++|+++++++|+++++++ ++++||+||||||||+|.++
T Consensus 27 ~~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~~~~~-~~vaIl~Dl~GPkIR~g~~~~ 105 (526)
T PLN02765 27 PALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAVKNTK-KLCAVMLDTVGPELQVINKTE 105 (526)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEecCCCCceeeeecCC
Confidence 3459999999999999999999999999999999999999999999999999999998 99999999999999999996
Q ss_pred CcEEecCCCEEEEEecCC-CCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccccc
Q 007349 177 QPIILKEGQEFNFTIKRG-VSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLL 255 (607)
Q Consensus 177 ~~i~l~~G~~v~l~~~~~-~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (607)
+++.|++||+|+|+.+.. .++++.|++||++|++.+++||+||+|||.+.
T Consensus 106 ~~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~~~----------------------------- 156 (526)
T PLN02765 106 KPISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVGQYLFT----------------------------- 156 (526)
T ss_pred CcEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEECCcccc-----------------------------
Confidence 479999999999998743 56778899999999999999999999966210
Q ss_pred cccCceEEEEEEEEeCCeEEEEEEeCcEecCC-CccccCCCccCCCCCCHHhHHHH-HhhHhcCCcEEEeccCCChhHHH
Q 007349 256 SIQGGMMSLAVKSKTKDLVKCIVVDGGELKSR-RHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVH 333 (607)
Q Consensus 256 s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~-Kgvn~p~~~~~lp~lt~kD~~dI-~~al~~gvD~I~~SfV~sa~dv~ 333 (607)
..+||++.|+|++++++.++|+|++||.|+++ ||||+||+.+++|.||+||++|| .||+++|+|||++|||++++||.
T Consensus 157 g~~dg~i~l~V~~~~~~~v~~~v~~gG~L~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DI~ 236 (526)
T PLN02765 157 GSETTSVWLEVDEVKGDDVVCTVKNSATLAGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVR 236 (526)
T ss_pred cccCceEEEEEEEEECCEEEEEEEeCcEECCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCCHHHHH
Confidence 01277999999999999999999999999995 89999999999999999999999 69999999999999999999999
Q ss_pred HHHHHHHhcCC-CceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccc
Q 007349 334 ELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 412 (607)
Q Consensus 334 ~vr~~l~~~~~-~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmL 412 (607)
++|+++.+.|. +++|||||||++|++||+||++++|||||||||||+|+|+++||.+||+||++|+++|||||+ ||||
T Consensus 237 ~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmL 315 (526)
T PLN02765 237 EAREFLSSLGLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVV 315 (526)
T ss_pred HHHHHHHhcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhh
Confidence 99999998775 899999999999999999999999999999999999999999999999999999999999996 9999
Q ss_pred hhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccc--cCCCChhHH
Q 007349 413 ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFS--AHKSHMGDM 490 (607)
Q Consensus 413 eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ 490 (607)
|||+.+|.|||||++|||||+.||+|++|||+|||+|+||+|||++|++||+++|+.+++...+..... ....+..++
T Consensus 316 eSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~a 395 (526)
T PLN02765 316 DSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLES 395 (526)
T ss_pred hHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999986544322221110 001134689
Q ss_pred HHHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEe-CC------------HHHHhhhccCCCeEEEEeccCC
Q 007349 491 FAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFT-NQ------------ERIKQRLVLYQGVMPIYMQFSD 556 (607)
Q Consensus 491 ia~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT-~d------------~~taRrL~L~wGV~Pi~~~~~~ 556 (607)
+|.+|+++|+.+++ +|||||+||+||+++|||||.+||+|+| ++ ++++|||+|+|||+|++++...
T Consensus 396 ia~sav~~A~~l~a~aIvv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~ 475 (526)
T PLN02765 396 IASSAVRAAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRH 475 (526)
T ss_pred HHHHHHHHHhhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEecccc
Confidence 99999999999999 8999999999999999999999999999 77 8999999999999999986544
Q ss_pred C-------HHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEeC
Q 007349 557 D-------VEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKVQ 606 (607)
Q Consensus 557 d-------~d~~i~~Al~~ake~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V~ 606 (607)
+ .++++..|++++++.|++++||.||++++ .|+||+++|..++
T Consensus 476 ~~e~~~~~~~~~~~~a~~~~~~~g~~~~GD~vvv~~~-------~g~tn~i~v~~v~ 525 (526)
T PLN02765 476 SAESTSATNESVLKVALDHGKAAGVIKSHDRVVVCQK-------VGDSSVVKIIELD 525 (526)
T ss_pred ccccccccHHHHHHHHHHHHHHcCCCCCCCEEEEEec-------CCCCceEEEEEcC
Confidence 4 67889999999999999999999999975 4889999999886
No 10
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=1.6e-124 Score=1025.61 Aligned_cols=467 Identities=43% Similarity=0.675 Sum_probs=440.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCC
Q 007349 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (607)
Q Consensus 98 ~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 177 (607)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|+++++++ ++++||+||||||||+|.++.
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~-~~i~il~Dl~GpkiR~g~~~~ 79 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTG-GPVAIALDTKGPEIRTGLFKG 79 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeecccCC
Confidence 5899999999999999999999999999999999999999999999999999999998 999999999999999999964
Q ss_pred --cEEecCCCEEEEEecC--CCCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccc
Q 007349 178 --PIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCF 253 (607)
Q Consensus 178 --~i~l~~G~~v~l~~~~--~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 253 (607)
++.|++||.|+|+.+. ..++.+.|+++|++|++.+++||.||+|
T Consensus 80 ~~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~id-------------------------------- 127 (480)
T cd00288 80 GKDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVD-------------------------------- 127 (480)
T ss_pred CCceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEe--------------------------------
Confidence 6999999999999875 4567789999999999999999999999
Q ss_pred cccccCceEEEEEEEEeCC-eEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHH
Q 007349 254 LLSIQGGMMSLAVKSKTKD-LVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVV 332 (607)
Q Consensus 254 ~~s~~DG~i~l~V~~~~~~-~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv 332 (607)
||++.|+|.+++++ .++|+|.+||.|+++||||+||..+++|.||+||++||+|++++|+|||++|||++++||
T Consensus 128 -----DG~i~l~V~~~~~~~~i~~~v~~~G~l~~~kgin~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di 202 (480)
T cd00288 128 -----DGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKGVNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDV 202 (480)
T ss_pred -----CCEEEEEEEEEcCCceEEEEEEeCeEEcCCCceEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHH
Confidence 99999999999998 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccc
Q 007349 333 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 412 (607)
Q Consensus 333 ~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmL 412 (607)
.++|+|+++.|.++.+||||||++|++|+|+|++++|||||||||||+++|.++|+.+|++|+++|+++|||+|+|||||
T Consensus 203 ~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmL 282 (480)
T cd00288 203 LEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQML 282 (480)
T ss_pred HHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhH
Confidence 99999999989899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccc--cCCCChhHH
Q 007349 413 ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFS--AHKSHMGDM 490 (607)
Q Consensus 413 eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ 490 (607)
|||+++|.|||||++|+|||+.||+|++|||+|||+|+||+|||++|++||+++|+.+++..++..... ....+..++
T Consensus 283 eSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~a 362 (480)
T cd00288 283 ESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEA 362 (480)
T ss_pred HHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHH
Confidence 999999999999999999999999999999999999999999999999999999986544322221111 011146799
Q ss_pred HHHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccC-----CCHHHHHHH
Q 007349 491 FAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFS-----DDVEETFSR 564 (607)
Q Consensus 491 ia~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~-----~d~d~~i~~ 564 (607)
+|.+|+++|+++++ +||++|.||+||+++|+|||.+||||+|++++++|+|+|+|||+|++++.. .+.++++..
T Consensus 363 ia~sAv~~A~~l~akaIVv~T~SG~TA~~lS~~RP~~pIiavT~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~ 442 (480)
T cd00288 363 VAMSAVRAAFELGAKAIVVLTTSGRTARLVSKYRPNAPIIAVTRNEQTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKA 442 (480)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHhhheeeccCcEEEEecccccccCCCHHHHHHH
Confidence 99999999999999 899999999999999999999999999999999999999999999998765 789999999
Q ss_pred HHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 007349 565 AIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKV 605 (607)
Q Consensus 565 Al~~ake~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V 605 (607)
|.+++++.|++++||.||+++|. |. ..|.||+++|..|
T Consensus 443 ~~~~~~~~g~~~~gd~vv~~~g~--~~-~~~~tn~i~v~~~ 480 (480)
T cd00288 443 AVNVAKEKGLLKKGDLVVVVQGW--PV-GSGSTNTMRILTV 480 (480)
T ss_pred HHHHHHHcCCCCCCCEEEEEeCC--CC-CCCCCeEEEEEEC
Confidence 99999999999999999999994 54 5699999999875
No 11
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=1.4e-122 Score=1007.15 Aligned_cols=452 Identities=42% Similarity=0.694 Sum_probs=430.0
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCC
Q 007349 97 ARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVP 176 (607)
Q Consensus 97 ~~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~ 176 (607)
++|||||||||||+++++|+|++|+++|||+||||||||++++|+++++++|+++++++ +|++|++||||||||+|.++
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~-~~i~I~~Dl~GpkiR~g~~~ 80 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLG-RPVAILLDLKGPKIRVGKFK 80 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeecccc
Confidence 57899999999999999999999999999999999999999999999999999999998 99999999999999999996
Q ss_pred C-cEEecCCCEEEEEecC-CCCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCccccc
Q 007349 177 Q-PIILKEGQEFNFTIKR-GVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFL 254 (607)
Q Consensus 177 ~-~i~l~~G~~v~l~~~~-~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 254 (607)
+ ++.|++||+|+|+.++ ..++++.|++||++|++.+++||.||+|
T Consensus 81 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilid--------------------------------- 127 (465)
T PRK05826 81 EGKITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLD--------------------------------- 127 (465)
T ss_pred CCcEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEe---------------------------------
Confidence 5 7999999999999873 3567789999999999999999999999
Q ss_pred ccccCceEEEEEEEEeCCeEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHH
Q 007349 255 LSIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHE 334 (607)
Q Consensus 255 ~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~ 334 (607)
||++.|+|++++++.++|+|++||.|+++||||+||+.+++|.||++|.++|+|++++|+|+|++|||++++|+.+
T Consensus 128 ----DG~i~l~V~~~~~~~v~~~v~~~g~l~s~kgvnlp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~ 203 (465)
T PRK05826 128 ----DGKLQLKVVEVDGDEVETEVKNGGPLSNNKGINIPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEE 203 (465)
T ss_pred ----CCeEEEEEEEEeCCEEEEEEEeCcEecCCceeeccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-CceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccch
Q 007349 335 LKDYLKSCNA-DIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLE 413 (607)
Q Consensus 335 vr~~l~~~~~-~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLe 413 (607)
+++|+.+.|. ++.|||||||++|++|+|||++++|||||||||||+++|.++++.+|++|+++|+++|||+|+||||||
T Consensus 204 l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLe 283 (465)
T PRK05826 204 ARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLE 283 (465)
T ss_pred HHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHH
Q 007349 414 SMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAF 493 (607)
Q Consensus 414 SM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~ 493 (607)
||+++|.|||||++|||||+.||+|++|||+|||+|+||+|||++|++||.++|+++++...+..+.. ...+..+++|.
T Consensus 284 SM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~-~~~~~~~~ia~ 362 (465)
T PRK05826 284 SMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSINLSKHRLDR-QFDRIDEAIAM 362 (465)
T ss_pred HHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchhhhhhhccc-cccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987654222111111 11357899999
Q ss_pred HHHHHHhhcC-C-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccCCCHHHHHHHHHHHHHH
Q 007349 494 HSTTMANTLN-T-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMD 571 (607)
Q Consensus 494 ~a~~~A~~l~-a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~d~d~~i~~Al~~ake 571 (607)
+|+++|+.++ + +|||||+||+||+++|||||.+||||+|++++++|+|+|+|||+|++++...+.++++..|++++++
T Consensus 363 aa~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~pI~~~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~ 442 (465)
T PRK05826 363 SAMYAANHLKGVKAIVALTESGRTARLISRFRPGAPIFAVTRDEKTQRRLALYRGVYPVLFDSAADTDDAAEEALRLLLE 442 (465)
T ss_pred HHHHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999999 9 8999999999999999999999999999999999999999999999998778999999999999999
Q ss_pred cCCCCCCCEEEEEecC
Q 007349 572 KNLVTKGEFVTLVQSG 587 (607)
Q Consensus 572 ~Gll~~GD~VVvvsg~ 587 (607)
.|++++||.||+++|.
T Consensus 443 ~g~~~~gd~vvvv~g~ 458 (465)
T PRK05826 443 KGLVESGDLVVVTSGD 458 (465)
T ss_pred cCCCCCCCEEEEEeCC
Confidence 9999999999999984
No 12
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=1.1e-116 Score=966.28 Aligned_cols=465 Identities=45% Similarity=0.744 Sum_probs=435.7
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCC-
Q 007349 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ- 177 (607)
Q Consensus 99 r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~- 177 (607)
|||||||||||+++++|+|++|+++|||+||||||||++++|+++|+++|+++++++ ++++||+||||||||+|.++.
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~-~~~~i~~Dl~GpkiR~g~~~~~ 79 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLG-RPVAILLDTKGPEIRTGEIKGG 79 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCCCceeccccCCC
Confidence 689999999999999999999999999999999999999999999999999999998 999999999999999999965
Q ss_pred cEEecCCCEEEEEecC--CCCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccccc
Q 007349 178 PIILKEGQEFNFTIKR--GVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLL 255 (607)
Q Consensus 178 ~i~l~~G~~v~l~~~~--~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (607)
++.|++||.|.|+.+. ..++++.|++||++|++.+++||.||+|
T Consensus 80 ~~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~id---------------------------------- 125 (473)
T TIGR01064 80 PVKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVD---------------------------------- 125 (473)
T ss_pred ceecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEe----------------------------------
Confidence 7999999999999774 3467788999999999999999999999
Q ss_pred cccCceEEEEEEEEeCCeEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHH
Q 007349 256 SIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHEL 335 (607)
Q Consensus 256 s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~v 335 (607)
||+|.|+|++++++.++|+|++||.|+++||||+||..+++|.||+||.+||.++++.|+|+|++|||++++|+..+
T Consensus 126 ---dG~i~l~V~~~~~~~~~~~v~~~g~l~~~kgvn~p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l 202 (473)
T TIGR01064 126 ---DGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNLPGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEV 202 (473)
T ss_pred ---CCeEEEEEEEEECCEEEEEEEeCcEEcCCceeecCCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchh
Q 007349 336 KDYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLES 414 (607)
Q Consensus 336 r~~l~~~~-~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeS 414 (607)
++|+.+.+ .++.||+||||++|++|++||++++||+|+|||||++++|.++++.+|++|+.+|+++|||+|+|||||||
T Consensus 203 ~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeS 282 (473)
T TIGR01064 203 REVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDS 282 (473)
T ss_pred HHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhh
Confidence 99998877 58999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCcc--ccCCCChhHHHH
Q 007349 415 MIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQF--SAHKSHMGDMFA 492 (607)
Q Consensus 415 M~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~--~~~~~~~~~~ia 492 (607)
|+.+|.|||||++|++|++.+|+|++|||+||+.|+||+|||++|++||.++|++..+...+.... .....+..+++|
T Consensus 283 M~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia 362 (473)
T TIGR01064 283 MIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIA 362 (473)
T ss_pred hhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHH
Confidence 999999999999999999999999999999999999999999999999999998754322221111 111235689999
Q ss_pred HHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEecc-CCCHHHHHHHHHHHHH
Q 007349 493 FHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQF-SDDVEETFSRAIKLLM 570 (607)
Q Consensus 493 ~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~-~~d~d~~i~~Al~~ak 570 (607)
.+|+++|+.+++ +||+||+||+||+++|||||.+||||+|++++++|+|+|+|||+|++++. ..+.++++..++++++
T Consensus 363 ~~a~~~a~~~~akaIVv~T~SG~TA~~vSr~rp~~PIiAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~ 442 (473)
T TIGR01064 363 LSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPIIAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLK 442 (473)
T ss_pred HHHHHHHhhcCCCEEEEEcCChHHHHHHHhhCCCCCEEEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999 89999999999999999999999999999999999999999999999976 5688999999999999
Q ss_pred HcCCCCCCCEEEEEecCCCCCCCCCCccEEEE
Q 007349 571 DKNLVTKGEFVTLVQSGAQPIWRQESTHHIQV 602 (607)
Q Consensus 571 e~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V 602 (607)
+.|++++||.||+++|. .|+...|.||+++|
T Consensus 443 ~~gl~~~GD~VVvv~g~-~~~~~~~~~n~i~v 473 (473)
T TIGR01064 443 EKGILKKGDLVVVIQGG-APIGGVGGTNTIRV 473 (473)
T ss_pred HcCCCCCCCEEEEEecC-CCCCCCCCCeEEeC
Confidence 99999999999999983 24456789999875
No 13
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=1.5e-116 Score=954.74 Aligned_cols=440 Identities=34% Similarity=0.546 Sum_probs=410.8
Q ss_pred CcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCC-cEEecCCCEEEEEecC---CCCCcce
Q 007349 125 MNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ-PIILKEGQEFNFTIKR---GVSTEDT 200 (607)
Q Consensus 125 m~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~-~i~l~~G~~v~l~~~~---~~~~~~~ 200 (607)
|||||||||||++++|+++++++|+++++++ ++++||+||||||||+|.+++ ++.|++||+|.|+.+. ..++++.
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~-~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~~~ 79 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELG-VNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDK 79 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEEecCCCceeccccCCCcEEecCCCEEEEEeccccccCCCCCE
Confidence 8999999999999999999999999999998 999999999999999999964 7999999999999773 3466778
Q ss_pred EeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccccccccCceEEEEEEEEeC-CeEEEEEE
Q 007349 201 VSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLLSIQGGMMSLAVKSKTK-DLVKCIVV 279 (607)
Q Consensus 201 i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~DG~i~l~V~~~~~-~~i~c~V~ 279 (607)
|++||++|++.+++||.||+| ||+|.|+|.++++ +.++|+|+
T Consensus 80 i~v~~~~l~~~v~~G~~ilid-------------------------------------DG~i~l~V~~~~~~~~v~~~v~ 122 (454)
T PTZ00300 80 FYIDYQNLSKVVRPGGYIYID-------------------------------------DGILILHVQSHEDEQTLKCTVT 122 (454)
T ss_pred EEecCcccccccCCCCEEEEe-------------------------------------CCeEEEEEEEEcCCceEEEEEe
Confidence 999999999999999999999 9999999999986 69999999
Q ss_pred eCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHh
Q 007349 280 DGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIP 359 (607)
Q Consensus 280 ~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~ 359 (607)
+||.|+++||||+||..+++|.++++|.++|+|++++|+|+|++|||++++|+.+++++++..|.++.|||||||++|++
T Consensus 123 ~gG~l~~~kgvnlp~~~~~l~~ltekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~ 202 (454)
T PTZ00300 123 NAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQ 202 (454)
T ss_pred cCcEecCCCccccCCCccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred cHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccce
Q 007349 360 NLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADA 439 (607)
Q Consensus 360 NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~ 439 (607)
|||+|++.+|||||||||||+++|.++||.+||+|+++|+++|||+|+||||||||+++|.|||||++|||||+.||+|+
T Consensus 203 nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~Da 282 (454)
T PTZ00300 203 NIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADC 282 (454)
T ss_pred hHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccc--cCCCChhHHHHHHHHHHHhhcCC-CEEEEcCChHHH
Q 007349 440 VMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFS--AHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMA 516 (607)
Q Consensus 440 vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~~a~~~A~~l~a-~Iiv~T~sG~tA 516 (607)
+|||+|||+|+||+|||++|++||+++|+.+++..++..... ....+..+++|.+|+++|+.+++ +||+||+||+||
T Consensus 283 vMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA 362 (454)
T PTZ00300 283 VMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSA 362 (454)
T ss_pred EEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHH
Confidence 999999999999999999999999999986533222221111 01124578999999999999999 899999999999
Q ss_pred HHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEecc-----CCCHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCC
Q 007349 517 VILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQF-----SDDVEETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPI 591 (607)
Q Consensus 517 ~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~-----~~d~d~~i~~Al~~ake~Gll~~GD~VVvvsg~~~p~ 591 (607)
+++|||||.+||||+|++++++|+|+|+|||+|++++. ..+.++++..+++++++.|++++||.||+++|. |
T Consensus 363 ~~vs~~RP~~pIia~t~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~--~- 439 (454)
T PTZ00300 363 RLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDAERLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHAD--H- 439 (454)
T ss_pred HHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeccccccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCC--C-
Confidence 99999999999999999999999999999999998864 457889999999999999999999999999984 5
Q ss_pred CCCCCccEEEEEEe
Q 007349 592 WRQESTHHIQVRKV 605 (607)
Q Consensus 592 ~~~G~tntI~V~~V 605 (607)
+..|+||++||+.|
T Consensus 440 ~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 440 KVKGYANQTRIILV 453 (454)
T ss_pred CCCCCCCEEEEEEe
Confidence 35699999999986
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-112 Score=913.16 Aligned_cols=472 Identities=44% Similarity=0.676 Sum_probs=446.0
Q ss_pred CCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEee
Q 007349 94 GPNARRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSG 173 (607)
Q Consensus 94 ~~~~~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g 173 (607)
.+..+|+|||+||+||++++.|+|++|+++|||++|+|||||++++|+++++|+|++.+.++..|++|++|++||++|||
T Consensus 16 ~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LDtkGpEirtg 95 (501)
T KOG2323|consen 16 APKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLDTKGPEIRTG 95 (501)
T ss_pred ccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhccCCCeEeec
Confidence 56778999999999999999999999999999999999999999999999999999999998777999999999999999
Q ss_pred cCCC--cEEecCCCEEEEEecCCCC--CcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCC
Q 007349 174 DVPQ--PIILKEGQEFNFTIKRGVS--TEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDL 249 (607)
Q Consensus 174 ~~~~--~i~l~~G~~v~l~~~~~~~--~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 249 (607)
.+++ +++|++|++++|+.+.+.. .++.+++||+++.++|++||.||+|
T Consensus 96 ~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vd---------------------------- 147 (501)
T KOG2323|consen 96 DLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVD---------------------------- 147 (501)
T ss_pred ccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEEC----------------------------
Confidence 9975 8999999999999986432 3589999999999999999999999
Q ss_pred cccccccccCceEEEEEEEEeCCeEEEEEEeCcEecCCCc-cccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCC
Q 007349 250 TSCFLLSIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH-LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKD 328 (607)
Q Consensus 250 ~~~~~~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kg-vn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~s 328 (607)
||.+.+.|+++..+.+.|+|+++|.++|+|+ +|+||++.++|.||++|++|++||+++++|+|++|||+.
T Consensus 148 ---------dgi~s~~V~~~~~~~~~c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~ 218 (501)
T KOG2323|consen 148 ---------DGLISLIVKSVSKDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRK 218 (501)
T ss_pred ---------CceeeeEEEEeecCceEEEEecCcccccccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeee
Confidence 9999999999998999999999999999999 999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 329 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 329 a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
++|+.++|++|++.+++++||+|||+++|+.|+|+|+.++||+|++|||||+|+|.|+++.+||.+|.+|+.+|||||+|
T Consensus 219 a~dv~~iR~~Lg~~g~~ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~a 298 (501)
T KOG2323|consen 219 ASDVREVRKVLGESGKNIKLISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICA 298 (501)
T ss_pred hHHHHHHHHHhCccCCcceEEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEe
Confidence 99999999999988999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccc--cCCCC
Q 007349 409 TNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFS--AHKSH 486 (607)
Q Consensus 409 TqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~ 486 (607)
|||||||+.+|+|||||.+||+|||+||+|++|||+|||.|+||++||++|.+||.++|+.+++..++..+.. .+..+
T Consensus 299 tqmleSm~~kprPtRaE~SDVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~ 378 (501)
T KOG2323|consen 299 TQMLESMIVKPRPTRAEASDVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMS 378 (501)
T ss_pred hhhHHhhccCCCCCccchHHHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999888766655432 22335
Q ss_pred hhHHHHHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEe------ccCCCHH
Q 007349 487 MGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYM------QFSDDVE 559 (607)
Q Consensus 487 ~~~~ia~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~------~~~~d~d 559 (607)
..+++|.+|+.+|....+ +|+|+|+||++|+++|+|||++|||++|..+++|||++|||||+|+++ .|.++.|
T Consensus 379 ~ie~~a~~Av~~a~~~~a~aIvv~T~sg~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e 458 (501)
T KOG2323|consen 379 TIESLAASAVRAATKCLASAIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVE 458 (501)
T ss_pred hhHHHHHHHHHHHHhhcceEEEEEecCcccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhhHH
Confidence 779999999999998888 999999999999999999999999999999999999999999999995 4778999
Q ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEEe
Q 007349 560 ETFSRAIKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRKV 605 (607)
Q Consensus 560 ~~i~~Al~~ake~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~V 605 (607)
++++.+++++++.|+++.||.+|++.+.. +..|.+|+++|.++
T Consensus 459 ~~i~~g~~~~k~~g~~k~gd~~vvv~~~~---~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 459 SRIKFGLDFGKKKGILKKGDVVVVVNKGK---GGASVTNTIRVEKV 501 (501)
T ss_pred HHHHHHHHHHHhcchhhcCCEEEEEeccc---CCccceeeEEEeeC
Confidence 99999999999999999999777777742 36789999999764
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=1.8e-101 Score=818.60 Aligned_cols=337 Identities=49% Similarity=0.803 Sum_probs=307.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCC
Q 007349 98 RRKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ 177 (607)
Q Consensus 98 ~r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~ 177 (607)
||||||||||||+++++|+|++|+++|||+||||||||++++|+++++++|++.++++ ++++||+||+|||||||.+.+
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~-~~i~IllDl~GPkIRtg~l~~ 79 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELG-KPIAILLDLKGPKIRTGRLKD 79 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTT-TS-EEEEEE-TS-EBB-BBTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccC-CceEEEeccCCCcceeeeecc
Confidence 7999999999999999999999999999999999999999999999999999999998 999999999999999999965
Q ss_pred ---cEEecCCCEEEEEecCC---CCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcc
Q 007349 178 ---PIILKEGQEFNFTIKRG---VSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTS 251 (607)
Q Consensus 178 ---~i~l~~G~~v~l~~~~~---~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (607)
++.|++||+|+|+.+.. .+++..|++||++|++.|++||+||+|
T Consensus 80 g~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~Ilid------------------------------ 129 (348)
T PF00224_consen 80 GKKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILID------------------------------ 129 (348)
T ss_dssp SSSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEET------------------------------
T ss_pred ccccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEc------------------------------
Confidence 69999999999998854 346789999999999999999999999
Q ss_pred cccccccCceEEEEEEEEeCCe-EEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChh
Q 007349 252 CFLLSIQGGMMSLAVKSKTKDL-VKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAK 330 (607)
Q Consensus 252 ~~~~s~~DG~i~l~V~~~~~~~-i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~ 330 (607)
||++.|+|++++++. ++|+|.+||.|+++||||+|+..+++|.||++|++||.||+++|+|||++|||++++
T Consensus 130 -------DG~i~l~V~~v~~~~~i~~~v~~~G~L~~~KgVnlp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~ 202 (348)
T PF00224_consen 130 -------DGKIELEVTEVDGDSSIKCEVLNGGKLKSRKGVNLPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAE 202 (348)
T ss_dssp -------TTTEEEEEEEEESTEEEEEEESS-EEEESSEBEEETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHH
T ss_pred -------CCCcEEEEEEEcCCcceeEEeCCCCCccCCccceecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Q 007349 331 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 410 (607)
Q Consensus 331 dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTq 410 (607)
||.++|++|.+.+.+++|||||||++|++|||+|++++|||||||||||+|+|+++||.+||+|+++|+++|||||+|||
T Consensus 203 dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq 282 (348)
T PF00224_consen 203 DVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQ 282 (348)
T ss_dssp HHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESS
T ss_pred HHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 411 MLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 411 mLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
|||||+++|.|||||++|+|||+.+|+|++|||+|||+|+||++||++|++|++++|+.+++
T Consensus 283 ~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~~~i~~~~E~~~~~ 344 (348)
T PF00224_consen 283 MLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTMARIIREAEKYLDY 344 (348)
T ss_dssp SSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHTS-H
T ss_pred hHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998765
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=2e-100 Score=806.21 Aligned_cols=330 Identities=38% Similarity=0.676 Sum_probs=319.5
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCC-c
Q 007349 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQ-P 178 (607)
Q Consensus 100 ~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~-~ 178 (607)
++||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++. ++++||+||||||||+|.+++ +
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~-----~~vaIl~Dl~GPkIR~G~~~~~~ 76 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLD-----DSIKILGDVQGPKIRLGEIKGEQ 76 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhh-----hhcceeecCCCCcceecccCCCc
Confidence 6899999999999999999999999999999999999999999999999876 358999999999999999975 6
Q ss_pred EEecCCCEEEEEecCCCCCcceEeccccccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCccccccccc
Q 007349 179 IILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLLSIQ 258 (607)
Q Consensus 179 i~l~~G~~v~l~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 258 (607)
+.|++|+.|+|+.+...++.+.++++|++|++.+++||.||+|
T Consensus 77 i~l~~G~~v~lt~~~~~g~~~~i~v~~~~l~~~v~~Gd~Ilid------------------------------------- 119 (352)
T PRK06739 77 ITLQAGDSFILHTQPVTGSSTEASVDYEGIANDVKVGSRILMN------------------------------------- 119 (352)
T ss_pred EEecCCCEEEEecCccCCCCCEEecchHHHHhhcCCCCEEEEe-------------------------------------
Confidence 9999999999998765677788999999999999999999999
Q ss_pred CceEEEEEEEEeCCeEEEEEEeCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHH
Q 007349 259 GGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDY 338 (607)
Q Consensus 259 DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~ 338 (607)
||++.|+|++++++.++|+|++||.|+++||||+||..+++|.||+||++||.||+++|+|||++|||++++||.++|++
T Consensus 120 DG~i~l~V~~v~~~~v~~~v~~gG~L~s~Kgvn~pg~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~ 199 (352)
T PRK06739 120 DGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGAIVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDF 199 (352)
T ss_pred CCEEEEEEEEEeCCEEEEEEeeCcEEcCCCCeecccccCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcC-CCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhc
Q 007349 339 LKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMID 417 (607)
Q Consensus 339 l~~~~-~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~ 417 (607)
+.+.| .+++|||||||++|++||++|++++|||||||||||+|+|+++||.+||+|++.|+++|||||+||||||||++
T Consensus 200 l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~ 279 (352)
T PRK06739 200 IQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVD 279 (352)
T ss_pred HHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhcc
Confidence 99875 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007349 418 HPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 471 (607)
Q Consensus 418 ~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 471 (607)
+|.|||||++|+|||+.||+|++|||+|||+|+||++||++|++||+++|+..+
T Consensus 280 ~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~ 333 (352)
T PRK06739 280 HSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEHPIESVSTLRLVSEFAEHVKK 333 (352)
T ss_pred CCCCChHHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999997654
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=9.5e-90 Score=757.53 Aligned_cols=336 Identities=30% Similarity=0.489 Sum_probs=319.3
Q ss_pred ccCCCCCCCCceEEEecC-CCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCe
Q 007349 91 GVVGPNARRKTKIVCTIG-PSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPE 169 (607)
Q Consensus 91 ~~~~~~~~r~TKIi~TiG-Pss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~Gpk 169 (607)
+..++..+|+|||||||| |+++++++|++|+++||||||||||||++++|+++|++||+++++++ ++++|++||+|||
T Consensus 131 l~G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~g-r~~~I~mDL~GPK 209 (608)
T PRK14725 131 LLGPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELG-RRCRIAMDLAGPK 209 (608)
T ss_pred hcCCCCCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCCc
Confidence 334667789999999999 69999999999999999999999999999999999999999999998 9999999999999
Q ss_pred eEeecCC-C-----------------------------------------------------------------------
Q 007349 170 VRSGDVP-Q----------------------------------------------------------------------- 177 (607)
Q Consensus 170 iR~g~~~-~----------------------------------------------------------------------- 177 (607)
||||.+. +
T Consensus 210 iRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R~l~V 289 (608)
T PRK14725 210 LRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARGKKRKLTV 289 (608)
T ss_pred ceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeeccccceeeeE
Confidence 9999994 3
Q ss_pred ------------------------------------------cEEecCCCEEEEEecCCCC-----Ccc--eEecccccc
Q 007349 178 ------------------------------------------PIILKEGQEFNFTIKRGVS-----TED--TVSVNYDDF 208 (607)
Q Consensus 178 ------------------------------------------~i~l~~G~~v~l~~~~~~~-----~~~--~i~v~~~~~ 208 (607)
++.|++||.+.|+.+...+ +.. .|+++|+++
T Consensus 290 ~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~~t~p~l 369 (608)
T PRK14725 290 TEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARISCTLPEA 369 (608)
T ss_pred EeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEEEechHHH
Confidence 4799999999999874332 344 799999999
Q ss_pred ccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccccccccCceEEEEEEEEeCCeEEEEEEe----CcEe
Q 007349 209 VNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLLSIQGGMMSLAVKSKTKDLVKCIVVD----GGEL 284 (607)
Q Consensus 209 ~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~DG~i~l~V~~~~~~~i~c~V~~----gG~l 284 (607)
++.+++||.||+| ||+|.++|.+++++.++|+|++ ||.|
T Consensus 370 ~~~v~~G~~Vlid-------------------------------------DG~I~l~V~~~~~~~v~~~V~~a~~~gg~L 412 (608)
T PRK14725 370 FRAARVGERVWFD-------------------------------------DGKIGAVVVKVEADEVELRITHARPGGSKL 412 (608)
T ss_pred HHhcCCCCEEEEe-------------------------------------CCeEEEEEEEEECCEEEEEEEEecCCCCEe
Confidence 9999999999999 9999999999999999999999 9999
Q ss_pred cCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCC-CceEEEeecChhhHhcHHH
Q 007349 285 KSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLHS 363 (607)
Q Consensus 285 ~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~-~i~IIAKIEt~~av~Nlde 363 (607)
+++||||+||..+++|.||+||++||.|++++ +|||++|||++++||.+++++|.+.+. ++.|||||||++|++||++
T Consensus 413 ~s~KGiNlP~~~l~lp~LTekD~~dl~f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~e 491 (608)
T PRK14725 413 KAGKGINLPDSHLPLPALTDKDLEDLAFVAKH-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPR 491 (608)
T ss_pred cCCCceecCCCCCCCCCCCHHHHHHHHHHHHh-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHH
Confidence 99999999999999999999999999999999 999999999999999999999988754 7999999999999999999
Q ss_pred HHhhc-----cEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccc
Q 007349 364 IISAS-----DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD 438 (607)
Q Consensus 364 Il~~s-----DGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D 438 (607)
|+.++ |||||||||||+|+|+++||.+||+||+.|+++|||||+||||||||+++|.|||||++|+|||+ |+|
T Consensus 492 Il~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD 569 (608)
T PRK14725 492 ILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAE 569 (608)
T ss_pred HHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCC
Confidence 99986 99999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred eEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007349 439 AVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 471 (607)
Q Consensus 439 ~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 471 (607)
|+||| +|+||+|||++|++|+.++|.+..
T Consensus 570 ~VMLS----~G~yPveAV~~l~~I~~r~e~~~~ 598 (608)
T PRK14725 570 CVMLN----KGPHIVEAVRVLDDILRRMEEHQR 598 (608)
T ss_pred EEeec----CCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999 999999999999999999998764
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=3.7e-88 Score=739.43 Aligned_cols=335 Identities=28% Similarity=0.465 Sum_probs=318.6
Q ss_pred ccCCCCCCCCceEEEec-CCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCe
Q 007349 91 GVVGPNARRKTKIVCTI-GPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPE 169 (607)
Q Consensus 91 ~~~~~~~~r~TKIi~Ti-GPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~Gpk 169 (607)
+..+++.+|+||||||| ||+++++|+|++|+++||||||||||||++++|+++|++||+++++++ ++|+|++||+|||
T Consensus 125 l~g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g-~~i~Il~DL~GPK 203 (493)
T PRK08187 125 LFGPRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATG-RRCKILMDLAGPK 203 (493)
T ss_pred HcCCCcCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcC-CCeEEEEeCCCCc
Confidence 44567778999999999 599999999999999999999999999999999999999999999998 9999999999999
Q ss_pred eEeecCCC---cEEecCCCEEEEEecCCCC----CcceEeccccccccccCCCCEEEEeCCccceeeecccccccccccc
Q 007349 170 VRSGDVPQ---PIILKEGQEFNFTIKRGVS----TEDTVSVNYDDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNL 242 (607)
Q Consensus 170 iR~g~~~~---~i~l~~G~~v~l~~~~~~~----~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~ 242 (607)
||||.+.. ++.|++||.|+|+.+...+ +...|+++|++|++.+++||.|++|
T Consensus 204 IRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~Ilid--------------------- 262 (493)
T PRK08187 204 IRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWID--------------------- 262 (493)
T ss_pred eeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEe---------------------
Confidence 99999964 4899999999998874322 3568999999999999999999999
Q ss_pred ccccCCCcccccccccCceEEEEEEEEeCCeEEEEEE----eCcEecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCC
Q 007349 243 LFCSRDLTSCFLLSIQGGMMSLAVKSKTKDLVKCIVV----DGGELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQV 318 (607)
Q Consensus 243 ~~~~~~~~~~~~~s~~DG~i~l~V~~~~~~~i~c~V~----~gG~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gv 318 (607)
||+|.|+|++++++.++|+|+ +||+|+++|||||||..+++|.+|++|.+||.|+++ ++
T Consensus 263 ----------------DG~I~l~V~~v~~~~v~~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL~f~~~-~v 325 (493)
T PRK08187 263 ----------------DGKLGARVERVGPGGALLEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADLDFVAR-HA 325 (493)
T ss_pred ----------------CCeEEEEEEEEeCCEEEEEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHHHHHHh-cC
Confidence 999999999999999999999 999999999999999999999999999999999998 69
Q ss_pred cEEEeccCCChhHHHHHHHHHHhcC----CCceEEEeecChhhHhcHHHHHhhcc-----EEEEcCCCcccCCCCCCHHH
Q 007349 319 DFYAVSFVKDAKVVHELKDYLKSCN----ADIHVIVKIESADSIPNLHSIISASD-----GAMVARGDLGAELPIEDVPL 389 (607)
Q Consensus 319 D~I~~SfV~sa~dv~~vr~~l~~~~----~~i~IIAKIEt~~av~NldeIl~~sD-----GImIgRGDLg~elg~e~v~~ 389 (607)
|+|++|||++++||..+++++.+.+ .++.||+||||++|++|+++|+.++| |||||||||++|+|++++|.
T Consensus 326 D~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~ 405 (493)
T PRK08187 326 DLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAE 405 (493)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChH
Confidence 9999999999999999999998765 47999999999999999999998887 99999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcC
Q 007349 390 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 469 (607)
Q Consensus 390 ~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 469 (607)
+|++|+.+|+++|||+|+||||||||+++|.|||||++|+||+ +|+||+||| +|+||+|||++|++|+.++|++
T Consensus 406 ~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 406 MQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred HHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999997 999999999 9999999999999999999987
Q ss_pred C
Q 007349 470 L 470 (607)
Q Consensus 470 ~ 470 (607)
.
T Consensus 480 ~ 480 (493)
T PRK08187 480 Q 480 (493)
T ss_pred h
Confidence 4
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.95 E-value=1.4e-27 Score=216.42 Aligned_cols=115 Identities=32% Similarity=0.527 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccCC-CHHHHHHHH
Q 007349 488 GDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSD-DVEETFSRA 565 (607)
Q Consensus 488 ~~~ia~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~-d~d~~i~~A 565 (607)
.|++|.+|+++|+++++ +|||+|.||+||+++|||||.+||||+|++++++|||+|+|||+|++++... +.+++++.+
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a 80 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKDTEELIAEA 80 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEeccccccHHHHHHHH
Confidence 47899999999999999 8999999999999999999999999999999999999999999999998777 999999999
Q ss_pred HHHHHHcCCCCCCCEEEEEecCCCCCCCCCCccEEEEEE
Q 007349 566 IKLLMDKNLVTKGEFVTLVQSGAQPIWRQESTHHIQVRK 604 (607)
Q Consensus 566 l~~ake~Gll~~GD~VVvvsg~~~p~~~~G~tntI~V~~ 604 (607)
+++++++|++++||.||+++|. |.+..|.||+++|++
T Consensus 81 ~~~~~~~g~~~~gd~vVv~~g~--~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 81 LEYAKERGLLKPGDKVVVVAGM--PFGTPGGTNTIRVVR 117 (117)
T ss_dssp HHHHHHTTSS-TTSEEEEEEES--STTTTSSEEEEEEEE
T ss_pred HHHHHHcCCCCCCCEEEEEeCC--CCCCCCCCEEEEEEC
Confidence 9999999999999999999994 668899999999974
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.65 E-value=2.9e-16 Score=160.49 Aligned_cols=132 Identities=27% Similarity=0.303 Sum_probs=114.3
Q ss_pred CCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHH--------------------------HHHHhcCCCceEEEeecCh
Q 007349 302 ITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK--------------------------DYLKSCNADIHVIVKIESA 355 (607)
Q Consensus 302 lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr--------------------------~~l~~~~~~i~IIAKIEt~ 355 (607)
+...|...|+.++|.|+++|.+|+|+++++++++. +|++..|.++.++++|||+
T Consensus 69 vp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~ 148 (249)
T TIGR03239 69 PPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQ 148 (249)
T ss_pred CCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCH
Confidence 34467788999999999999999999999999874 5777788899999999999
Q ss_pred hhHhcHHHHHhh--ccEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhh
Q 007349 356 DSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS 427 (607)
Q Consensus 356 ~av~NldeIl~~--sDGImIgRGDLg~elg~------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~ 427 (607)
+|++|+++|+++ +|++++|++||+.++|. +++..+..+++.+|+++|||+++ ..+.|.
T Consensus 149 ~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~---------~~~~~~----- 214 (249)
T TIGR03239 149 KGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGI---------LAPVEA----- 214 (249)
T ss_pred HHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEE---------cCCCHH-----
Confidence 999999999988 89999999999999986 36778888999999999999987 333443
Q ss_pred hHHHHHHhccceEEeccccc
Q 007349 428 DIAIAVREGADAVMLSGETA 447 (607)
Q Consensus 428 Dv~nav~~G~D~vmLs~ETa 447 (607)
+...++..|++.++++.|+.
T Consensus 215 ~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 215 DARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred HHHHHHHcCCCEEEEhHHHH
Confidence 45588899999999988865
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.65 E-value=2.9e-16 Score=161.09 Aligned_cols=134 Identities=26% Similarity=0.332 Sum_probs=114.6
Q ss_pred CCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHH--------------------------HHHHhcCCCceEEEeecC
Q 007349 301 SITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK--------------------------DYLKSCNADIHVIVKIES 354 (607)
Q Consensus 301 ~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr--------------------------~~l~~~~~~i~IIAKIEt 354 (607)
.+.+.|...|+.++|.|+++|.+|+|+++++++++. +|++..|.++.++++|||
T Consensus 75 Rvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt 154 (256)
T PRK10558 75 RVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIES 154 (256)
T ss_pred ECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECC
Confidence 345567788999999999999999999999999863 577788889999999999
Q ss_pred hhhHhcHHHHHhh--ccEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhh
Q 007349 355 ADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEV 426 (607)
Q Consensus 355 ~~av~NldeIl~~--sDGImIgRGDLg~elg~------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv 426 (607)
++|++|+++|+++ +|++++|++||+.++|. +++..+..+++.+|+++|||+++ ..+.|.
T Consensus 155 ~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~---------~~~~~~---- 221 (256)
T PRK10558 155 QQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGI---------LAPVEA---- 221 (256)
T ss_pred HHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEE---------cCCCHH----
Confidence 9999999999987 89999999999999986 35788889999999999999987 223332
Q ss_pred hhHHHHHHhccceEEecccccC
Q 007349 427 SDIAIAVREGADAVMLSGETAH 448 (607)
Q Consensus 427 ~Dv~nav~~G~D~vmLs~ETa~ 448 (607)
+...++..|++.++++.|+..
T Consensus 222 -~~~~~~~~G~~~v~~~~D~~~ 242 (256)
T PRK10558 222 -DARRYLEWGATFVAVGSDLGV 242 (256)
T ss_pred -HHHHHHHcCCCEEEEchHHHH
Confidence 345788999999999888653
No 22
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.62 E-value=1.9e-15 Score=150.77 Aligned_cols=132 Identities=27% Similarity=0.324 Sum_probs=115.7
Q ss_pred CCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHH---------------------------HHHHHhcCCCceEEEeecC
Q 007349 302 ITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHEL---------------------------KDYLKSCNADIHVIVKIES 354 (607)
Q Consensus 302 lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~v---------------------------r~~l~~~~~~i~IIAKIEt 354 (607)
+...|...|+..+|.|+..+.+|+|+|+++.+++ .+|+...|+++++++||||
T Consensus 74 ~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEt 153 (255)
T COG3836 74 PPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIET 153 (255)
T ss_pred CCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEcc
Confidence 3446778899999999999999999999998876 3788899999999999999
Q ss_pred hhhHhcHHHHHhh--ccEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhh
Q 007349 355 ADSIPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEV 426 (607)
Q Consensus 355 ~~av~NldeIl~~--sDGImIgRGDLg~elg~------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv 426 (607)
++|++|||+|+.+ +|||||||+||+.++|+ ++|..+...++.+.+++||..++ ..+.|..+.
T Consensus 154 r~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi---------l~~~p~~a~- 223 (255)
T COG3836 154 RAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGI---------LAADPADAR- 223 (255)
T ss_pred HHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccc---------ccCCHHHHH-
Confidence 9999999999998 99999999999999997 46777778999999999999987 455565544
Q ss_pred hhHHHHHHhccceEEeccccc
Q 007349 427 SDIAIAVREGADAVMLSGETA 447 (607)
Q Consensus 427 ~Dv~nav~~G~D~vmLs~ETa 447 (607)
+++..|+.++.+..+|.
T Consensus 224 ----~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 224 ----RYLALGATFVAVGSDTG 240 (255)
T ss_pred ----HHHHhCCeEEEEeccHH
Confidence 88899999999888865
No 23
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.61 E-value=2e-15 Score=155.70 Aligned_cols=129 Identities=24% Similarity=0.309 Sum_probs=110.6
Q ss_pred HhHHHHHhhHhcCCcEEEeccCCChhHHHHHH---------------------------HHHHhcCCCceEEEeecChhh
Q 007349 305 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELK---------------------------DYLKSCNADIHVIVKIESADS 357 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr---------------------------~~l~~~~~~i~IIAKIEt~~a 357 (607)
.|...|+.++|.|+++|.+|+|+|+++++++. +|++..|.++.+|+||||++|
T Consensus 78 ~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a 157 (267)
T PRK10128 78 GSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTA 157 (267)
T ss_pred CCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHH
Confidence 45677899999999999999999999999764 345556778999999999999
Q ss_pred HhcHHHHHhh--ccEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhH
Q 007349 358 IPNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI 429 (607)
Q Consensus 358 v~NldeIl~~--sDGImIgRGDLg~elg~------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv 429 (607)
++|+++|+++ .|++++|++||+.++|+ +++..+.++++++|+++|||+++ ..+.|. +.
T Consensus 158 ~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~---------~~~~~~-----~a 223 (267)
T PRK10128 158 LDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGF---------LAVDPD-----MA 223 (267)
T ss_pred HHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEE---------cCCCHH-----HH
Confidence 9999999998 89999999999999996 46888889999999999999987 233332 44
Q ss_pred HHHHHhccceEEeccccc
Q 007349 430 AIAVREGADAVMLSGETA 447 (607)
Q Consensus 430 ~nav~~G~D~vmLs~ETa 447 (607)
..++..|++.+.++.|+.
T Consensus 224 ~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 224 QKCLAWGANFVAVGVDTM 241 (267)
T ss_pred HHHHHcCCcEEEEChHHH
Confidence 578889999999988865
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.52 E-value=2.7e-14 Score=146.01 Aligned_cols=128 Identities=21% Similarity=0.266 Sum_probs=107.2
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHH---------------------------hcCCCceEEEeecChhhH
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLK---------------------------SCNADIHVIVKIESADSI 358 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~---------------------------~~~~~i~IIAKIEt~~av 358 (607)
|..+|..+++.|+|+|.+|+|+++++++++.++++ ..|.++.++++|||++|+
T Consensus 73 ~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av 152 (249)
T TIGR02311 73 DPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREAL 152 (249)
T ss_pred CHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHH
Confidence 34578999999999999999999999998876653 123367899999999999
Q ss_pred hcHHHHHhh--ccEEEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHH
Q 007349 359 PNLHSIISA--SDGAMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA 430 (607)
Q Consensus 359 ~NldeIl~~--sDGImIgRGDLg~elg~------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~ 430 (607)
+|+++|+++ .|++++|++||+.++|. +++..+.+++..+|+.+||+.++. ...|. +..
T Consensus 153 ~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~---------~~~~~-----~~~ 218 (249)
T TIGR02311 153 DNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGIL---------TADPK-----LAR 218 (249)
T ss_pred HHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeec---------CCCHH-----HHH
Confidence 999999987 89999999999999997 246677788999999999999872 23333 344
Q ss_pred HHHHhccceEEeccccc
Q 007349 431 IAVREGADAVMLSGETA 447 (607)
Q Consensus 431 nav~~G~D~vmLs~ETa 447 (607)
.++..|++.++++.|+.
T Consensus 219 ~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 219 QYLKLGALFVAVGVDTT 235 (249)
T ss_pred HHHHcCCCEEEEchHHH
Confidence 78899999999998865
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.50 E-value=1.2e-14 Score=145.40 Aligned_cols=134 Identities=24% Similarity=0.276 Sum_probs=103.8
Q ss_pred CCCCHHh-HHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhc-------CCCceEEEeecChhhHhcHHHHHhh--cc
Q 007349 300 PSITDKD-WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-------NADIHVIVKIESADSIPNLHSIISA--SD 369 (607)
Q Consensus 300 p~lt~kD-~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~-------~~~i~IIAKIEt~~av~NldeIl~~--sD 369 (607)
+.+++.. .+||. +++.|+|+|.+|+|++++++.++.+++... +.++.++++|||++||+|+++|++. .|
T Consensus 67 n~~~~~~~~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~ 145 (221)
T PF03328_consen 67 NSLDSPHIERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVD 145 (221)
T ss_dssp SSTTCHHHHHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEE
T ss_pred CCCCcchhhhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCee
Confidence 3444444 36777 999999999999999999999999888643 3568999999999999999999976 79
Q ss_pred EEEEcCCCcccCCCCC------CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh--hhhHHHHHHhccceEE
Q 007349 370 GAMVARGDLGAELPIE------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVM 441 (607)
Q Consensus 370 GImIgRGDLg~elg~e------~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vm 441 (607)
++++|++||+.++|.. ++..+.++++.+|+++|||++-. ....+...+ ..++++++..|+|+-+
T Consensus 146 ~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~--------~~~~~~d~~~~~~~~~~~~~~G~dg~~ 217 (221)
T PF03328_consen 146 GLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDG--------VFPDFEDAEGLEAEGFRARALGFDGKL 217 (221)
T ss_dssp EEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEE--------EESSSSHHHHHHHHHHHCCEEEEHHCC
T ss_pred EEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEE--------eeCCHHHHHHHHHHHHHHHHHcccccc
Confidence 9999999999999984 47888999999999999976542 223444444 5667788888887654
Q ss_pred e
Q 007349 442 L 442 (607)
Q Consensus 442 L 442 (607)
+
T Consensus 218 ~ 218 (221)
T PF03328_consen 218 C 218 (221)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.19 E-value=1.1e-10 Score=136.58 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=120.7
Q ss_pred CCCHHhHHHHHhhHh-cCCcE--EEeccCCChhHHHHHHHHHHhc-----CCCceEEEeecChhhHhcHHHHHhhccEEE
Q 007349 301 SITDKDWEDIKFGVD-NQVDF--YAVSFVKDAKVVHELKDYLKSC-----NADIHVIVKIESADSIPNLHSIISASDGAM 372 (607)
Q Consensus 301 ~lt~kD~~dI~~al~-~gvD~--I~~SfV~sa~dv~~vr~~l~~~-----~~~i~IIAKIEt~~av~NldeIl~~sDGIm 372 (607)
.+-....+.|..+++ .|++. |.+|||++++++.+++++++.. +.++.+++||||++|+.|+|+|++++|+++
T Consensus 617 ~lf~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~ 696 (795)
T PRK06464 617 EAFALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFS 696 (795)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEE
Confidence 455567788899998 79888 9999999999999999888643 346899999999999999999999999999
Q ss_pred EcCCCccc-CCCC---------------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCC-CChHhhhhHHHHHHh
Q 007349 373 VARGDLGA-ELPI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVRE 435 (607)
Q Consensus 373 IgRGDLg~-elg~---------------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~-PtrAEv~Dv~nav~~ 435 (607)
||+.||+. .+|. +.|..+.++++++|+++|||++++.+|.. . |.. +..++..
T Consensus 697 IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~------~~p~~-----~~~l~~~ 765 (795)
T PRK06464 697 IGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPS------DHPDF-----AEWLVEE 765 (795)
T ss_pred ECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCC------CcHHH-----HHHHHHC
Confidence 99999996 3442 46888889999999999999998654321 2 333 3367888
Q ss_pred ccceEEecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 007349 436 GADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 436 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 470 (607)
|++.+.++.+ ++-.++..+.++|+.+
T Consensus 766 G~~~ls~~~d---------~~~~~k~~i~~~~~~~ 791 (795)
T PRK06464 766 GIDSISLNPD---------AVVDTWLAVAEVEKKI 791 (795)
T ss_pred CCCEEEEcch---------hHHHHHHHHHHhHHHh
Confidence 9999998744 5556677777777654
No 27
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.17 E-value=1.6e-10 Score=120.74 Aligned_cols=129 Identities=19% Similarity=0.199 Sum_probs=103.4
Q ss_pred HHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhc-------CCCceEEEeecChhhHhcHHHHHhh---ccEEEE
Q 007349 304 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-------NADIHVIVKIESADSIPNLHSIISA---SDGAMV 373 (607)
Q Consensus 304 ~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~-------~~~i~IIAKIEt~~av~NldeIl~~---sDGImI 373 (607)
+.-..||...++.|+++|.+|+|++++++..+.+++... +.++.++++|||++|+.|+++|++. +|++++
T Consensus 72 ~~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~ 151 (288)
T TIGR01588 72 PFGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIAL 151 (288)
T ss_pred hhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEe
Confidence 344578888899999999999999999999998777532 3468899999999999999999954 789999
Q ss_pred cCCCcccCCCCC------CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChH--h--hhhHHHHHHhccceEEe
Q 007349 374 ARGDLGAELPIE------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRA--E--VSDIAIAVREGADAVML 442 (607)
Q Consensus 374 gRGDLg~elg~e------~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrA--E--v~Dv~nav~~G~D~vmL 442 (607)
|+.||+.++|.. ++..+..+++.+|+++|+++|-. +.+... | ..+..++...|+++=+.
T Consensus 152 G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~----------v~~~~~d~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 152 GAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDT----------VYSDVNNEEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred CHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccC----------CccCcCCHHHHHHHHHHHHHcCCCceec
Confidence 999999999863 48888899999999999998531 222211 1 34566788889887554
No 28
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.17 E-value=1.8e-10 Score=134.76 Aligned_cols=150 Identities=18% Similarity=0.164 Sum_probs=119.9
Q ss_pred CCCCHHhHHHHHhhH-hcCCcE--EEeccCCChhHHHHHHHHHHhc-----CCCceEEEeecChhhHhcHHHHHhhccEE
Q 007349 300 PSITDKDWEDIKFGV-DNQVDF--YAVSFVKDAKVVHELKDYLKSC-----NADIHVIVKIESADSIPNLHSIISASDGA 371 (607)
Q Consensus 300 p~lt~kD~~dI~~al-~~gvD~--I~~SfV~sa~dv~~vr~~l~~~-----~~~i~IIAKIEt~~av~NldeIl~~sDGI 371 (607)
|.+-....+.|..++ +.|+.. |.+|||++++++.++++++... +.++.+++|||+++|+.|+|+|++++|++
T Consensus 609 ~~lf~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfi 688 (782)
T TIGR01418 609 EEAFRLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGF 688 (782)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEE
Confidence 556667778888988 889888 9999999999999999888643 23489999999999999999999999999
Q ss_pred EEcCCCccc-CCCC---------------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHh
Q 007349 372 MVARGDLGA-ELPI---------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 435 (607)
Q Consensus 372 mIgRGDLg~-elg~---------------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~ 435 (607)
+||+.||+. .++. +.|..+.++++++|+++|||++++.+|-. ..| ..+.-++..
T Consensus 689 sIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~-----~~p-----~~~~~l~~~ 758 (782)
T TIGR01418 689 SIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPS-----DYP-----EVVEFLVEE 758 (782)
T ss_pred EECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCC-----CCH-----HHHHHHHHc
Confidence 999999997 4443 46888889999999999999998644221 023 234477889
Q ss_pred ccceEEecccccCCCCHHHHHHHHHHHHHHhhc
Q 007349 436 GADAVMLSGETAHGKFPLKAVKVMHTVALRTES 468 (607)
Q Consensus 436 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~ 468 (607)
|++.+.++.+ .+..++..+.++|+
T Consensus 759 G~~~ls~~~d---------~~~~~k~~i~~~e~ 782 (782)
T TIGR01418 759 GIDSISLNPD---------AVLRTRLQVAEVEK 782 (782)
T ss_pred CCCEEEECcc---------hHHHHHHHHHHhcC
Confidence 9999999755 44556666777664
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.07 E-value=6e-10 Score=126.15 Aligned_cols=135 Identities=16% Similarity=0.082 Sum_probs=110.7
Q ss_pred CCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHh-----------cCCCceEEEeecChhhHhcHHHHHh
Q 007349 298 NLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-----------CNADIHVIVKIESADSIPNLHSIIS 366 (607)
Q Consensus 298 ~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~-----------~~~~i~IIAKIEt~~av~NldeIl~ 366 (607)
.-|.+-....+.|..+++.|...|.+|+|++++++.++++.++. .+.++.+.++|||+.|+.++|+|++
T Consensus 364 ~~~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~ 443 (565)
T TIGR01417 364 EREEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAK 443 (565)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHh
Confidence 34555566668888999999999999999999999998877653 3567899999999999999999999
Q ss_pred hccEEEEcCCCcccC----------CCC------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHH
Q 007349 367 ASDGAMVARGDLGAE----------LPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA 430 (607)
Q Consensus 367 ~sDGImIgRGDLg~e----------lg~------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~ 430 (607)
.+|+++||+.||+.. ++. +.|..+.++++++|+++|||+.++.+|- ..| ..+.
T Consensus 444 ~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a------~~p-----~~~~ 512 (565)
T TIGR01417 444 EVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA------GDE-----RAIP 512 (565)
T ss_pred hCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC------CCH-----HHHH
Confidence 999999999999872 442 4688899999999999999999754321 223 2455
Q ss_pred HHHHhccceEEec
Q 007349 431 IAVREGADAVMLS 443 (607)
Q Consensus 431 nav~~G~D~vmLs 443 (607)
.++..|++.+.++
T Consensus 513 ~l~~~G~~~lsv~ 525 (565)
T TIGR01417 513 LLLGLGLRELSMS 525 (565)
T ss_pred HHHHCCCCEEEEC
Confidence 7889999998776
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.96 E-value=2.1e-09 Score=121.80 Aligned_cols=135 Identities=14% Similarity=0.074 Sum_probs=110.7
Q ss_pred CCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHh-----------cCCCceEEEeecChhhHhcHHHHHh
Q 007349 298 NLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-----------CNADIHVIVKIESADSIPNLHSIIS 366 (607)
Q Consensus 298 ~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~-----------~~~~i~IIAKIEt~~av~NldeIl~ 366 (607)
.-|.+-...++.|..+.++|...|.+|+|.+++++.++++.++. .+.++.+.++||++.|+.|+|+|++
T Consensus 365 ~~~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~ 444 (575)
T PRK11177 365 DRKEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAK 444 (575)
T ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHh
Confidence 34555566678888899999999999999999999998876642 3467899999999999999999999
Q ss_pred hccEEEEcCCCcccCC-----C-----------CCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHH
Q 007349 367 ASDGAMVARGDLGAEL-----P-----------IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA 430 (607)
Q Consensus 367 ~sDGImIgRGDLg~el-----g-----------~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~ 430 (607)
.+|+++||+.||+..+ + .+.|..+.++++++|+++|||+.++.+| ...|.. +.
T Consensus 445 ~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~------A~dp~~-----~~ 513 (575)
T PRK11177 445 EVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGEL------AGDERA-----TL 513 (575)
T ss_pred hCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCC------CCCHHH-----HH
Confidence 9999999999999833 2 1468889999999999999999998764 233433 33
Q ss_pred HHHHhccceEEec
Q 007349 431 IAVREGADAVMLS 443 (607)
Q Consensus 431 nav~~G~D~vmLs 443 (607)
-.+..|.|-+-.+
T Consensus 514 lLlglGi~~lSm~ 526 (575)
T PRK11177 514 LLLGMGLDEFSMS 526 (575)
T ss_pred HHHHCCCCeEEEC
Confidence 6788899987776
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.59 E-value=1.2e-07 Score=98.80 Aligned_cols=158 Identities=22% Similarity=0.162 Sum_probs=117.7
Q ss_pred CHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCce---EEEeecChhhHhcHHHHHhhc---cEEEEcCC
Q 007349 303 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIH---VIVKIESADSIPNLHSIISAS---DGAMVARG 376 (607)
Q Consensus 303 t~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~---IIAKIEt~~av~NldeIl~~s---DGImIgRG 376 (607)
|++-.+||...+..++|+|.+|+|+++.|+..+...+.+...... +++.|||++|+.|..+|+..+ .|+.+|..
T Consensus 66 t~~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 66 TPWGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred ChhhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 446678888888899999999999999999999988876554444 999999999999999999985 89999999
Q ss_pred CcccCCCCC-------CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh--hhhHHHHHHhccceEEeccc--
Q 007349 377 DLGAELPIE-------DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVMLSGE-- 445 (607)
Q Consensus 377 DLg~elg~e-------~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vmLs~E-- 445 (607)
||..++|.. .+..+..+|+.+|+.+|++.+-. +++. -...| ..+..++...|+|+-++=.=
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~-------V~~d-~~d~~g~~~e~~~a~~~Gf~GK~~IHP~Q 217 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDG-------VYTD-INDPEGFAREAAQAAALGFDGKTCIHPSQ 217 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccc-------cccc-cCCHHHHHHHHHHHHHcCCCcccccChhH
Confidence 999999862 56678899999999999998642 1111 11112 56678889999988765210
Q ss_pred ----ccCCCCHHHHHHHHHHHHHHhhc
Q 007349 446 ----TAHGKFPLKAVKVMHTVALRTES 468 (607)
Q Consensus 446 ----Ta~G~yPveaV~~m~~I~~~aE~ 468 (607)
-.....+-+-|.+-++|...++.
T Consensus 218 I~~vn~af~Ps~~ev~~Ar~Il~a~~~ 244 (283)
T COG2301 218 IEVVNRAFSPSEEEVAWARRVLEAAAA 244 (283)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 00122233455555666655554
No 32
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.18 E-value=8.3e-05 Score=83.67 Aligned_cols=139 Identities=13% Similarity=0.139 Sum_probs=98.2
Q ss_pred CCcEEEeccCCChhHHHHHHHHHHhcC-------CCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCcccCCCCC
Q 007349 317 QVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIE 385 (607)
Q Consensus 317 gvD~I~~SfV~sa~dv~~vr~~l~~~~-------~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDLg~elg~e 385 (607)
+--||.+|++++++++..+.+.+.... ..+.+++.|||+.|+-|++||+.. +.|+..|+.|+..+++..
T Consensus 184 ~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~ 263 (511)
T cd00480 184 SGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKT 263 (511)
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccc
Confidence 334788999999999999988875432 358899999999999999999976 569999999999988531
Q ss_pred -------------------C-HHHHHHHHHHHHHHcCCCEE--EEcccc-hhhhcCCCCChHh-hhhHHHHHHhccceEE
Q 007349 386 -------------------D-VPLLQEDIIRRCRSMQKPVI--VATNML-ESMIDHPTPTRAE-VSDIAIAVREGADAVM 441 (607)
Q Consensus 386 -------------------~-v~~~qk~II~~c~~aGKPvi--vaTqmL-eSM~~~~~PtrAE-v~Dv~nav~~G~D~vm 441 (607)
. +...++.++.+|+++|.++| +++++- ..|-..+....+. ..|-..+...|+|+-+
T Consensus 264 ~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkw 343 (511)
T cd00480 264 FRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTW 343 (511)
T ss_pred cccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccc
Confidence 1 44457789999999999874 333321 1111111112222 5567888999999977
Q ss_pred ecccccCCCCHHHHHHHHHHHH
Q 007349 442 LSGETAHGKFPLKAVKVMHTVA 463 (607)
Q Consensus 442 Ls~ETa~G~yPveaV~~m~~I~ 463 (607)
.- +|- -|...+.+-
T Consensus 344 vi-------HP~-qV~~~n~vF 357 (511)
T cd00480 344 VA-------HPG-LAPLAALVF 357 (511)
T ss_pred cc-------CHH-HHHHHHHHH
Confidence 63 674 344444443
No 33
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.18 E-value=1e-05 Score=85.13 Aligned_cols=133 Identities=20% Similarity=0.218 Sum_probs=99.2
Q ss_pred CCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhc-----------CCCceEEEeecChhhHhcHHHHHhhc
Q 007349 300 PSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-----------NADIHVIVKIESADSIPNLHSIISAS 368 (607)
Q Consensus 300 p~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~-----------~~~i~IIAKIEt~~av~NldeIl~~s 368 (607)
|.+-....+.|..+..+|-=.|.+|||++.+++.++++++++. +.++++-++||++.++--+|++++.+
T Consensus 119 p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~ 198 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKEV 198 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTTS
T ss_pred hhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHHC
Confidence 5556666777877777775568999999999999999887654 35689999999999999999999999
Q ss_pred cEEEEcCCCcc-----cCCC-----------CCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHH
Q 007349 369 DGAMVARGDLG-----AELP-----------IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 432 (607)
Q Consensus 369 DGImIgRGDLg-----~elg-----------~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na 432 (607)
|.+-||-.||. ++=. .+.|..+.++++++|+++||||.++.+|-. .|.. +--.
T Consensus 199 DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~------~p~~-----~~~L 267 (293)
T PF02896_consen 199 DFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMAS------DPEA-----IPLL 267 (293)
T ss_dssp SEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGG------SHHH-----HHHH
T ss_pred CEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCC------CHHH-----HHHH
Confidence 99999977762 1111 135778889999999999999999877533 3333 3478
Q ss_pred HHhccceEEec
Q 007349 433 VREGADAVMLS 443 (607)
Q Consensus 433 v~~G~D~vmLs 443 (607)
+..|.|.+..+
T Consensus 268 l~lGi~~lSv~ 278 (293)
T PF02896_consen 268 LGLGIRSLSVS 278 (293)
T ss_dssp HHHT-SEEEE-
T ss_pred HHcCCCEEEEC
Confidence 88999999887
No 34
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.16 E-value=3.5e-05 Score=86.24 Aligned_cols=118 Identities=16% Similarity=0.176 Sum_probs=90.0
Q ss_pred CCcEEEeccCCChhHHHHHHHHHHhcC-------CCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCcccCCCC-
Q 007349 317 QVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPI- 384 (607)
Q Consensus 317 gvD~I~~SfV~sa~dv~~vr~~l~~~~-------~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDLg~elg~- 384 (607)
|+ ||.+|++++++++..+.+.+.... ..++++++|||+.|+-|++||+.. +.|+..||.|+..+++.
T Consensus 185 gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~ 263 (511)
T cd00727 185 GP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKK 263 (511)
T ss_pred Cc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHh
Confidence 57 999999999999999888875322 358899999999999999999965 68999999999998821
Q ss_pred ----------C--------CHHHH-HHHHHHHHHHcCCCEEEEcccchhhhcCCCCCh----------Hh-hhhHHHHHH
Q 007349 385 ----------E--------DVPLL-QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR----------AE-VSDIAIAVR 434 (607)
Q Consensus 385 ----------e--------~v~~~-qk~II~~c~~aGKPvivaTqmLeSM~~~~~Ptr----------AE-v~Dv~nav~ 434 (607)
+ .+..+ ++.++.+|+++|+..|- .|.. -.|.+ +. ..|-.....
T Consensus 264 ~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AId------Gm~a-~ip~kdd~~~n~~~l~~~r~dk~~~~~ 336 (511)
T cd00727 264 FRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMG------GMAA-QIPIKDDPAANEAALAKVRADKLREAT 336 (511)
T ss_pred hccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCccc------chhh-cCCcccchhhHHHHHHHHHHHHHHHHh
Confidence 1 23333 66799999999999764 2311 12211 11 455678889
Q ss_pred hccceEEe
Q 007349 435 EGADAVML 442 (607)
Q Consensus 435 ~G~D~vmL 442 (607)
+|+|+-++
T Consensus 337 lGfDGkwv 344 (511)
T cd00727 337 AGHDGTWV 344 (511)
T ss_pred CCCCcccc
Confidence 99999887
No 35
>PRK09255 malate synthase; Validated
Probab=98.10 E-value=9.3e-05 Score=83.23 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=103.7
Q ss_pred CCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcC-------CCceEEEeecChhhHhcHHHHH
Q 007349 293 RGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHSII 365 (607)
Q Consensus 293 p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~-------~~i~IIAKIEt~~av~NldeIl 365 (607)
|+.-+++-..-=.|.+.+... -.|+ +|.+|++++++++..+.+.+.... ..++++++|||+.|+-|++||+
T Consensus 183 ~~~l~Dfgl~~fhd~~~l~~~-g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa 260 (531)
T PRK09255 183 SGSLFDFALYFFHNAKELLAK-GSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEIL 260 (531)
T ss_pred chhHHHHHHHHHhhHHHHHhC-CCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHH
Confidence 344444433333444433332 4577 999999999999999888875322 4588999999999999999999
Q ss_pred hh----ccEEEEcCCCcccC----CCCC---------------CHHHH-HHHHHHHHHHcCCCEEEEcccchhhhcCCCC
Q 007349 366 SA----SDGAMVARGDLGAE----LPIE---------------DVPLL-QEDIIRRCRSMQKPVIVATNMLESMIDHPTP 421 (607)
Q Consensus 366 ~~----sDGImIgRGDLg~e----lg~e---------------~v~~~-qk~II~~c~~aGKPvivaTqmLeSM~~~~~P 421 (607)
.. +.|+..||.|+..+ ++.. .+..+ ++.++.+|+++|+..|- .|. ...|
T Consensus 261 ~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AId------Gm~-a~ip 333 (531)
T PRK09255 261 YELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMG------GMA-AFIP 333 (531)
T ss_pred HhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccC------chh-hcCC
Confidence 65 68999999999966 2211 23333 67788999999999764 221 1123
Q ss_pred Ch----------Hh-hhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHH
Q 007349 422 TR----------AE-VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 462 (607)
Q Consensus 422 tr----------AE-v~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I 462 (607)
.+ +. ..|-.....+|+|+-++ -+|-+ |...+++
T Consensus 334 ~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwv-------iHP~q-V~ianev 377 (531)
T PRK09255 334 IKNDPEANEAALAKVRADKEREANDGHDGTWV-------AHPGL-VPTAMEV 377 (531)
T ss_pred cccChhhhHHHHHHHHHHHHHHHhCCCCccee-------cCHHH-HHHHHHH
Confidence 11 11 45567888999999887 46744 3444443
No 36
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=97.95 E-value=0.00019 Score=80.38 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=96.3
Q ss_pred CCCccCCCCCCHHhHHHHHhhHhc--CCcEEEeccCCChhHHHHHHHHHHhcC-------CCceEEEeecChhhHhcHHH
Q 007349 293 RGKSANLPSITDKDWEDIKFGVDN--QVDFYAVSFVKDAKVVHELKDYLKSCN-------ADIHVIVKIESADSIPNLHS 363 (607)
Q Consensus 293 p~~~~~lp~lt~kD~~dI~~al~~--gvD~I~~SfV~sa~dv~~vr~~l~~~~-------~~i~IIAKIEt~~av~Nlde 363 (607)
|+.-+++-...-.|.+.+ ++. | -+|.+|++++++++..+.+.+.... ..+++.++|||+.|+-|++|
T Consensus 163 ~~~l~Dfgl~~~hd~~~l---~~~g~G-p~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~E 238 (511)
T TIGR01344 163 PGSLFDFGLYFFHNARAL---LKKGKG-PYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDE 238 (511)
T ss_pred chHHHHHHHHHHhhHHHH---HhCCCC-CEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHH
Confidence 444444433334444333 333 5 4899999999999998888775322 35889999999999999999
Q ss_pred HHhh----ccEEEEcCCCcccCCC----C------C---------CHHH-HHHHHHHHHHHcCCCEEEEcccchhhhc-C
Q 007349 364 IISA----SDGAMVARGDLGAELP----I------E---------DVPL-LQEDIIRRCRSMQKPVIVATNMLESMID-H 418 (607)
Q Consensus 364 Il~~----sDGImIgRGDLg~elg----~------e---------~v~~-~qk~II~~c~~aGKPvivaTqmLeSM~~-~ 418 (607)
|+.. +.|+..||.|+..++. . + .+.. .++.++.+|+++|+.+|- .|.. .
T Consensus 239 Ia~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AId------Gm~a~i 312 (511)
T TIGR01344 239 ILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMG------GMAAFI 312 (511)
T ss_pred HHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccC------chhccC
Confidence 9975 6899999999995443 1 0 2333 477788999999999864 2211 1
Q ss_pred C---CCCh---Hh---hhhHHHHHHhccceEEe
Q 007349 419 P---TPTR---AE---VSDIAIAVREGADAVML 442 (607)
Q Consensus 419 ~---~Ptr---AE---v~Dv~nav~~G~D~vmL 442 (607)
+ .|.- |- ..|-.....+|+|+-++
T Consensus 313 p~k~D~~~n~~al~~vr~dk~re~~lGfDGkwv 345 (511)
T TIGR01344 313 PIKGDPAANEAAMNKVRADKIREAKNGHDGTWV 345 (511)
T ss_pred CcccChhhHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 1 1211 01 45567888999999877
No 37
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.21 E-value=0.00067 Score=79.93 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=99.6
Q ss_pred CCCCHHhHHHHHhhHh-cCCcEEEeccCCChhHHHHHHHHHHhc--------C---CCceEEEeecChhhHhcHHHHHhh
Q 007349 300 PSITDKDWEDIKFGVD-NQVDFYAVSFVKDAKVVHELKDYLKSC--------N---ADIHVIVKIESADSIPNLHSIISA 367 (607)
Q Consensus 300 p~lt~kD~~dI~~al~-~gvD~I~~SfV~sa~dv~~vr~~l~~~--------~---~~i~IIAKIEt~~av~NldeIl~~ 367 (607)
|.+-.-..+.|..+.. +|-=.|.+|||.+.+++.++++.+++. | .++++-++||+|.++--+|++++.
T Consensus 532 ~~~f~~QlrAilra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~ 611 (748)
T PRK11061 532 PEIFLIQVRAMLRANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASR 611 (748)
T ss_pred HHHHHHHHHHHHHHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHh
Confidence 4444444556655554 565568999999999999998887631 2 237799999999999999999999
Q ss_pred ccEEEEcCCCccc-----CCCC-----------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHH
Q 007349 368 SDGAMVARGDLGA-----ELPI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI 431 (607)
Q Consensus 368 sDGImIgRGDLg~-----elg~-----------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~n 431 (607)
+|.+-||-.||.- +=+- +.|..+.++++++|+++||||.++.+|= ..|.... -
T Consensus 612 ~DF~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a------~dp~~~~-----~ 680 (748)
T PRK11061 612 VDFISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMA------GDPMGAL-----L 680 (748)
T ss_pred CCEEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCcc------cCHHHHH-----H
Confidence 9999999888742 1111 3577888999999999999999987642 2344433 6
Q ss_pred HHHhccceEEec
Q 007349 432 AVREGADAVMLS 443 (607)
Q Consensus 432 av~~G~D~vmLs 443 (607)
.+..|.|.+-++
T Consensus 681 L~glGi~~lS~~ 692 (748)
T PRK11061 681 LIGLGYRHLSMN 692 (748)
T ss_pred HHHCCCcEEccC
Confidence 778888886664
No 38
>PLN02626 malate synthase
Probab=97.10 E-value=0.0015 Score=73.47 Aligned_cols=123 Identities=18% Similarity=0.261 Sum_probs=88.8
Q ss_pred cEEEeccCCChhHHHHHHHHHHhc-------CCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCc----ccCCC
Q 007349 319 DFYAVSFVKDAKVVHELKDYLKSC-------NADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDL----GAELP 383 (607)
Q Consensus 319 D~I~~SfV~sa~dv~~vr~~l~~~-------~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDL----g~elg 383 (607)
-||.+|++++++++..+.+.+... ...+++.+.|||..|+-|++||+.. +-|+..||-|+ ...++
T Consensus 213 pYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~ 292 (551)
T PLN02626 213 PFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFR 292 (551)
T ss_pred ceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhc
Confidence 488999999999999988777532 2458999999999999999999975 68999999999 33333
Q ss_pred C---------CC----HHHHHH---HHHHHHHHcCCCEEE--EcccchhhhcCCCCChHh----hhhHHHHHHhccceEE
Q 007349 384 I---------ED----VPLLQE---DIIRRCRSMQKPVIV--ATNMLESMIDHPTPTRAE----VSDIAIAVREGADAVM 441 (607)
Q Consensus 384 ~---------e~----v~~~qk---~II~~c~~aGKPviv--aTqmLeSM~~~~~PtrAE----v~Dv~nav~~G~D~vm 441 (607)
. .. ++.++. .++.+|+++|...|- +.++-- ...|.+..+. ..|-.....+|+|+-+
T Consensus 293 ~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgGM~a~iP~--kdd~~~n~~al~~vr~dk~re~~~GfDG~w 370 (551)
T PLN02626 293 AHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGGMAAQIPI--KDDPAANEAALALVRKDKLREVRAGHDGTW 370 (551)
T ss_pred cCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCcccccccccccC--CCChhhhHHHHHHHHHHHHHHHhcCCCcee
Confidence 2 12 566665 999999999999753 222100 0111221111 4566788999999988
Q ss_pred ec
Q 007349 442 LS 443 (607)
Q Consensus 442 Ls 443 (607)
.-
T Consensus 371 Vi 372 (551)
T PLN02626 371 AA 372 (551)
T ss_pred ec
Confidence 84
No 39
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=97.01 E-value=0.0042 Score=74.21 Aligned_cols=135 Identities=19% Similarity=0.182 Sum_probs=100.5
Q ss_pred CCCCCCHHhHHHHHhhHhc----CCc---EEEeccCCChhHHHHHHHHHHhc--------C--CCceEEEeecChhhHhc
Q 007349 298 NLPSITDKDWEDIKFGVDN----QVD---FYAVSFVKDAKVVHELKDYLKSC--------N--ADIHVIVKIESADSIPN 360 (607)
Q Consensus 298 ~lp~lt~kD~~dI~~al~~----gvD---~I~~SfV~sa~dv~~vr~~l~~~--------~--~~i~IIAKIEt~~av~N 360 (607)
..|.+-+-..+.|..|... |.. -|++|||.+.+++..+++.+++. | -++.+-++||++.|.-.
T Consensus 668 ~~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ 747 (856)
T TIGR01828 668 TYPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALT 747 (856)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHH
Confidence 4466666666777555443 632 58999999999999998877532 2 23789999999999999
Q ss_pred HHHHHhhccEEEEcCCCccc------------CC------------CC-----CCHHHHHHHHHHHHHH--cCCCEEEEc
Q 007349 361 LHSIISASDGAMVARGDLGA------------EL------------PI-----EDVPLLQEDIIRRCRS--MQKPVIVAT 409 (607)
Q Consensus 361 ldeIl~~sDGImIgRGDLg~------------el------------g~-----e~v~~~qk~II~~c~~--aGKPvivaT 409 (607)
+|+|++.+|.+-||--||.- .+ |+ +.|..+.++++++|++ .|+||.++.
T Consensus 748 ad~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCG 827 (856)
T TIGR01828 748 ADKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICG 827 (856)
T ss_pred HHHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCC
Confidence 99999999999999665431 11 11 2467788899999998 899999986
Q ss_pred ccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 410 NMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 410 qmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
+| ...|.-.+ -++..|.|.+..|
T Consensus 828 E~------a~dp~~i~-----~l~~~Gi~~~S~s 850 (856)
T TIGR01828 828 EH------GGDPSSIE-----FCHKIGLNYVSCS 850 (856)
T ss_pred CC------cCCHHHHH-----HHHHCCCCEEEEC
Confidence 63 34555444 6677899988776
No 40
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.72 E-value=0.0076 Score=68.23 Aligned_cols=133 Identities=15% Similarity=0.116 Sum_probs=100.7
Q ss_pred CCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHh-------c----CCCceEEEeecChhhHhcHHHHHhhc
Q 007349 300 PSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKS-------C----NADIHVIVKIESADSIPNLHSIISAS 368 (607)
Q Consensus 300 p~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~-------~----~~~i~IIAKIEt~~av~NldeIl~~s 368 (607)
|.+-.-.++.|..|-.+|-=.|++|+|.+.+++..+++.+.+ . ++++.+=+|||+|.|.-.+|.+++.+
T Consensus 368 ~~if~tQLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakev 447 (574)
T COG1080 368 PEIFRTQLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEV 447 (574)
T ss_pred HHHHHHHHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhC
Confidence 444444456667777888888999999999999999987741 1 23688999999999999999999999
Q ss_pred cEEEEcCCCcc-----cCCCC-----------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHH
Q 007349 369 DGAMVARGDLG-----AELPI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 432 (607)
Q Consensus 369 DGImIgRGDLg-----~elg~-----------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na 432 (607)
|-+-||-.||. ++=+- +.|..+.++++..++++||||+++.+| ...|.- +--.
T Consensus 448 DFfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGEl------AgD~~a-----~plL 516 (574)
T COG1080 448 DFFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGEL------AGDPAA-----TPLL 516 (574)
T ss_pred CEeeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhh------ccChhh-----HHHH
Confidence 99999988863 22111 358888899999999999999997552 223322 2245
Q ss_pred HHhccceEEec
Q 007349 433 VREGADAVMLS 443 (607)
Q Consensus 433 v~~G~D~vmLs 443 (607)
+-.|.|-+-+|
T Consensus 517 lGlGldElSms 527 (574)
T COG1080 517 LGLGLDELSMS 527 (574)
T ss_pred HhcCcchhccC
Confidence 66777766555
No 41
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.42 E-value=0.032 Score=60.47 Aligned_cols=124 Identities=24% Similarity=0.301 Sum_probs=80.7
Q ss_pred HHhHHHHHhhHhcCCcEEEe--ccCCChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhhccEEEEcCCCccc
Q 007349 304 DKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLGA 380 (607)
Q Consensus 304 ~kD~~dI~~al~~gvD~I~~--SfV~sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~sDGImIgRGDLg~ 380 (607)
+.|.+.+...++.|+|+|.+ +...+...+..++ ++++...++.||+ .|-|.++.++|-+ .-+|+|-||=|-=++
T Consensus 107 ~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik-~ik~~~~~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGsi 183 (352)
T PF00478_consen 107 DDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIK-KIKKKFPDVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGSI 183 (352)
T ss_dssp TCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHH-HHHHHSTTSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSSTT
T ss_pred HHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHH-HHHHhCCCceEEecccCCHHHHHHHHH--cCCCEEEEeccCCcc
Confidence 35667777777899999887 4666655555554 4555556788887 9999999877533 239999999442111
Q ss_pred C-------CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 381 E-------LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 381 e-------lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
- +|.+ -..+..+..++++++++|+|- .... ..--|++.|+..|+|++||.
T Consensus 184 CtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIA---------DGGi---~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 184 CTTREVTGVGVP-QLTAVYECAEAARDYGVPIIA---------DGGI---RTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp BHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEE---------ESS----SSHHHHHHHHHTT-SEEEES
T ss_pred cccccccccCCc-HHHHHHHHHHHhhhccCceee---------cCCc---Ccccceeeeeeecccceeec
Confidence 1 1111 344455677888889999886 2222 22568999999999999985
No 42
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.35 E-value=0.041 Score=59.96 Aligned_cols=121 Identities=28% Similarity=0.296 Sum_probs=74.9
Q ss_pred HHHHHhhHhcCCcEEEecc-------CCChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhhccEEEEcCCCc
Q 007349 307 WEDIKFGVDNQVDFYAVSF-------VKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDL 378 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~Sf-------V~sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~sDGImIgRGDL 378 (607)
.+.++...+.|+|+|.+.. ..++.+...+.+++++. +++||+ .|-|.+....+-+ .-+|+||+|+|-=
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~G 219 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGPG 219 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCC
Confidence 3555666789999998843 22333566677777664 578888 8888877655554 3499999998852
Q ss_pred ccCCCC--C--CHHHHH--HHHHHHHHHc-------CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 379 GAELPI--E--DVPLLQ--EDIIRRCRSM-------QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 379 g~elg~--e--~v~~~q--k~II~~c~~a-------GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
+..... . .+|.+. .+..++++++ +.|+|.+.- .-+ -.|++.|+..|+|++|+.
T Consensus 220 s~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGG---------I~~---~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 220 AACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGG---------IGT---SGDIAKAIACGADAVMLG 285 (368)
T ss_pred cCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCC---------CCC---HHHHHHHHHcCCCeeccc
Confidence 111111 1 133221 2222222322 689887433 222 358999999999999974
No 43
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=96.09 E-value=0.027 Score=67.46 Aligned_cols=136 Identities=21% Similarity=0.187 Sum_probs=101.0
Q ss_pred cCCCCCCHHhHHHHHhhHh----cCCc---EEEeccCCChhHHHHHHHHHH--------hcCC--CceEEEeecChhhHh
Q 007349 297 ANLPSITDKDWEDIKFGVD----NQVD---FYAVSFVKDAKVVHELKDYLK--------SCNA--DIHVIVKIESADSIP 359 (607)
Q Consensus 297 ~~lp~lt~kD~~dI~~al~----~gvD---~I~~SfV~sa~dv~~vr~~l~--------~~~~--~i~IIAKIEt~~av~ 359 (607)
+..|.+.+-..+.|..|.. .|.+ -|++|+|.+.+++..+++.+. +.|. +..+-++||++.|.-
T Consensus 673 l~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal 752 (879)
T PRK09279 673 ITYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAAL 752 (879)
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHH
Confidence 4457777777777765543 3643 389999999999999887652 2232 478999999999999
Q ss_pred cHHHHHhhccEEEEcCCCcccC------------C------------CC-----CCHHHHHHHHHHHHHH--cCCCEEEE
Q 007349 360 NLHSIISASDGAMVARGDLGAE------------L------------PI-----EDVPLLQEDIIRRCRS--MQKPVIVA 408 (607)
Q Consensus 360 NldeIl~~sDGImIgRGDLg~e------------l------------g~-----e~v~~~qk~II~~c~~--aGKPviva 408 (607)
-+|+|++.+|.+-||--||.-- + |+ +.|..+.+..++++++ .|+|+.++
T Consensus 753 ~ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgIC 832 (879)
T PRK09279 753 TADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGIC 832 (879)
T ss_pred hHHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEEC
Confidence 9999999999999996665311 1 11 2366777889999998 79999997
Q ss_pred cccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 409 TNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 409 TqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.+ ....|.-.+ -+...|.|.+-.|
T Consensus 833 GE------~ggdp~~i~-----~l~~lGld~vS~s 856 (879)
T PRK09279 833 GE------HGGDPASIE-----FCHKVGLDYVSCS 856 (879)
T ss_pred CC------CccCHHHHH-----HHHHCCCCEEEEC
Confidence 65 344555544 6777899998887
No 44
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.47 E-value=0.28 Score=52.84 Aligned_cols=127 Identities=18% Similarity=0.204 Sum_probs=80.3
Q ss_pred CCHHhHHHHHhhHh--cCCcEEEec--cCCChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhhccEEEEc--
Q 007349 302 ITDKDWEDIKFGVD--NQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA-- 374 (607)
Q Consensus 302 lt~kD~~dI~~al~--~gvD~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~sDGImIg-- 374 (607)
..+.|.+.+..-++ .|+|+|.+- .-.+...+ +.-+++++.-+++.||| -+-|+++.++|-+ +-+|++-||
T Consensus 105 ~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i-~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVGIG 181 (346)
T PRK05096 105 TSDADFEKTKQILALSPALNFICIDVANGYSEHFV-QFVAKAREAWPDKTICAGNVVTGEMVEELIL--SGADIVKVGIG 181 (346)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHH-HHHHHHHHhCCCCcEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 36677777776666 499998763 32333333 33345555556677777 8999999877533 448999877
Q ss_pred CCCcccCCCC--CCHH--HHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 375 RGDLGAELPI--EDVP--LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 375 RGDLg~elg~--e~v~--~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
||-....=-. --+| .+..+..+++++.|+|+|- ..... .--|++.|+..|+|++||.
T Consensus 182 pGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiIA---------DGGi~---~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 182 PGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIVS---------DGGCT---VPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred CCccccCccccccChhHHHHHHHHHHHHHHcCCCEEe---------cCCcc---cccHHHHHHHcCCCEEEeC
Confidence 3322211000 1233 2334667777888999885 22222 2468999999999999986
No 45
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.46 E-value=0.4 Score=51.44 Aligned_cols=124 Identities=27% Similarity=0.380 Sum_probs=77.8
Q ss_pred HHhHHHHHhhHhcCCcEEEeccCC-ChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhh-ccEEEEc--CCCc
Q 007349 304 DKDWEDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVA--RGDL 378 (607)
Q Consensus 304 ~kD~~dI~~al~~gvD~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~-sDGImIg--RGDL 378 (607)
+.+.+.+...++.|+|+|.+++.. +.+.+.++-+.+.+..+++.|++ .+.|.+....+ ++. +|+|.++ +|--
T Consensus 93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l---~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 93 EDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDL---IDAGADGVKVGIGPGSI 169 (325)
T ss_pred hhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHH---HhcCCCEEEECCCCCcC
Confidence 556777788889999998876532 22444444445555555678876 66666555443 344 9999984 3321
Q ss_pred ccC-----CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 379 GAE-----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 379 g~e-----lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
... .+.+ ...+...+.+.++..++|+|.+ ....+ -.|++.++..|+|++|+.
T Consensus 170 ~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVIA~---------GGI~~---~~di~kAla~GA~~VmiG 226 (325)
T cd00381 170 CTTRIVTGVGVP-QATAVADVAAAARDYGVPVIAD---------GGIRT---SGDIVKALAAGADAVMLG 226 (325)
T ss_pred cccceeCCCCCC-HHHHHHHHHHHHhhcCCcEEec---------CCCCC---HHHHHHHHHcCCCEEEec
Confidence 100 1111 2234456677777789998863 33333 357889999999999984
No 46
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=95.05 E-value=0.082 Score=59.63 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=77.4
Q ss_pred CCcEEEeccCCChhHHHHHHHHHHhcC-----------------------CCceEEEeecChhhHhcHHHHHhh-c----
Q 007349 317 QVDFYAVSFVKDAKVVHELKDYLKSCN-----------------------ADIHVIVKIESADSIPNLHSIISA-S---- 368 (607)
Q Consensus 317 gvD~I~~SfV~sa~dv~~vr~~l~~~~-----------------------~~i~IIAKIEt~~av~NldeIl~~-s---- 368 (607)
.+-.|.+||.++++|+.++..+..+.+ ..+.||..+||.+++.|.++|+.. .
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 456789999999999999888877654 135799999999999999999986 2
Q ss_pred ---cEEEEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 007349 369 ---DGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 369 ---DGImIgRGDLg~elg~----e~v~~~qk~II~~c~~aGKPviv 407 (607)
=-||+||.|=+.+.|+ -.+-.+|.++.+.|+++|.++..
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 2689999999999987 35778999999999999999854
No 47
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=94.92 E-value=0.21 Score=54.52 Aligned_cols=120 Identities=23% Similarity=0.314 Sum_probs=69.7
Q ss_pred HHHHhhHhcCCcEEEec-------cCCChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhhccEEEEcCCCcc
Q 007349 308 EDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 379 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~sDGImIgRGDLg 379 (607)
+..+.+.+.|+|.|.+. |+....+...+.+++.+. +++||+ .|-|.+....+-+ .-+|+||+|||--.
T Consensus 146 e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGAN 221 (369)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCc
Confidence 44456679999999874 222233455666766654 577887 6666555433332 24999999986422
Q ss_pred cCCCC--CCHH--HHHHHHHHHHHH----cC---CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 380 AELPI--EDVP--LLQEDIIRRCRS----MQ---KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 380 ~elg~--e~v~--~~qk~II~~c~~----aG---KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
..-.. ..+| .+...+..+++. .| +|+|.+.- .-+. .|++.++..|+|++|+.
T Consensus 222 ~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGG---------I~tg---~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 222 TTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGG---------IETS---GDLVKAIACGADAVVLG 284 (369)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCC---------CCCH---HHHHHHHHcCCCEeeeH
Confidence 11100 1122 122222222221 23 79887433 3333 58999999999999985
No 48
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.81 E-value=0.62 Score=50.28 Aligned_cols=127 Identities=19% Similarity=0.201 Sum_probs=79.2
Q ss_pred CCHHhHHHHHhhHhc--CCcEEEec--cCCChhHHHHHHHHHHhcCCCceEEEe-ecChhhHhcHHHHHhhccEEEEcCC
Q 007349 302 ITDKDWEDIKFGVDN--QVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVARG 376 (607)
Q Consensus 302 lt~kD~~dI~~al~~--gvD~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IIAK-IEt~~av~NldeIl~~sDGImIgRG 376 (607)
..+.|.+.+..-++. ++|+|.+- .-.+...+ +.-+++++.-++..||+= |-|+++.+++-+ .-+|+|.||=|
T Consensus 104 ~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i-~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiG 180 (343)
T TIGR01305 104 SSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFV-EFVKLVREAFPEHTIMAGNVVTGEMVEELIL--SGADIVKVGIG 180 (343)
T ss_pred cCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHH-HHHHHHHhhCCCCeEEEecccCHHHHHHHHH--cCCCEEEEccc
Confidence 366777777777776 59998763 32333323 333445555566888887 999999875533 45999998722
Q ss_pred CcccCCCC--CCHH----HHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 377 DLGAELPI--EDVP----LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 377 DLg~elg~--e~v~----~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
-=++..+. ..+. .+...+.++++..++|+|. ..... .-.|++.|+..|+|++|+.
T Consensus 181 pGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIa---------DGGIr---~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 181 PGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIIS---------DGGCT---CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEE---------cCCcC---chhHHHHHHHcCCCEEEEC
Confidence 22222221 2222 2334555556666788886 22222 2468999999999999996
No 49
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=94.53 E-value=0.14 Score=57.72 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=78.4
Q ss_pred cCCcEEEeccCCChhHHHHHHHHHHhcC--------------CCceEEEeecChhhHhcHHHHHhh----------ccEE
Q 007349 316 NQVDFYAVSFVKDAKVVHELKDYLKSCN--------------ADIHVIVKIESADSIPNLHSIISA----------SDGA 371 (607)
Q Consensus 316 ~gvD~I~~SfV~sa~dv~~vr~~l~~~~--------------~~i~IIAKIEt~~av~NldeIl~~----------sDGI 371 (607)
..+..+.+|+.++++|+.++..++++.+ ..+.||..+||.+.+.|.++|++. .--|
T Consensus 120 ~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qeV 199 (494)
T PRK13655 120 QPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLRV 199 (494)
T ss_pred hhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeEE
Confidence 4566788999999999999887776554 157899999999999999999975 1479
Q ss_pred EEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 007349 372 MVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 372 mIgRGDLg~elg~----e~v~~~qk~II~~c~~aGKPviv 407 (607)
|+|+.|=+.+-|+ -.+..+|.++.+.|+++|+++..
T Consensus 200 mlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 200 FLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9999999999887 36888999999999999999865
No 50
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.46 E-value=0.86 Score=51.72 Aligned_cols=124 Identities=26% Similarity=0.328 Sum_probs=78.9
Q ss_pred CHHhHHHHHhhHhcCCcEEEeccC--CChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhh-ccEEEEc--CC
Q 007349 303 TDKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVA--RG 376 (607)
Q Consensus 303 t~kD~~dI~~al~~gvD~I~~SfV--~sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~-sDGImIg--RG 376 (607)
++.+.+.+...++.|+|.|.+... ++...+..++. +.+.-.++.|+| -+-|++.... .++. +|+|.+| +|
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~~~~~v~aG~V~t~~~a~~---~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNYPHVDIIAGNVVTADQAKN---LIDAGADGLRIGMGSG 314 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhCCCceEEECCcCCHHHHHH---HHHcCCCEEEECCcCC
Confidence 445677777788999999987643 34433333333 323334688888 6666655543 3344 8999864 55
Q ss_pred Cc-----ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 377 DL-----GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 377 DL-----g~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
-- -...|.+. ..+...+.+.|++.|.|+|. ....-+- .|++.|+..|+|++|+.
T Consensus 315 s~~~t~~~~~~g~p~-~~ai~~~~~~~~~~~v~vIa---------dGGi~~~---~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 315 SICITQEVCAVGRPQ-ASAVYHVARYARERGVPCIA---------DGGIKNS---GDICKALALGADCVMLG 373 (495)
T ss_pred cccccchhccCCCCh-HHHHHHHHHHHhhcCCeEEe---------cCCCCCH---HHHHHHHHcCCCEEEEC
Confidence 21 11233222 23445677888999999887 3333333 57899999999999996
No 51
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.65 E-value=1.5 Score=49.08 Aligned_cols=127 Identities=24% Similarity=0.267 Sum_probs=80.1
Q ss_pred CCHHhHHHHHhhHhcCCcEEEeccCC-ChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhhccEEEEc--CCC
Q 007349 302 ITDKDWEDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RGD 377 (607)
Q Consensus 302 lt~kD~~dI~~al~~gvD~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~sDGImIg--RGD 377 (607)
+.+.+.+.+...++.|+|+|.+-..+ ....+.+.-+.+.+.-.++.|++ -+-|+++..++-+ .-+|+|-+| +|-
T Consensus 221 ~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G~ 298 (450)
T TIGR01302 221 TREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPGS 298 (450)
T ss_pred CchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCCc
Confidence 35566777777888999999875431 11223332333444335677777 7888877755543 238999866 552
Q ss_pred ccc-----CCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 378 LGA-----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 378 Lg~-----elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
-.. ..|.+ -..+...+.+.|++.++|+|. ....-+- .|++.|+..|+|++|+.
T Consensus 299 ~~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpvia---------dGGi~~~---~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 299 ICTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVIA---------DGGIRYS---GDIVKALAAGADAVMLG 356 (450)
T ss_pred CCccceecCCCcc-HHHHHHHHHHHHhhcCCeEEE---------eCCCCCH---HHHHHHHHcCCCEEEEC
Confidence 111 12222 224446677778889999887 3333333 47899999999999986
No 52
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.51 E-value=1 Score=50.99 Aligned_cols=129 Identities=16% Similarity=0.214 Sum_probs=85.3
Q ss_pred CCCHHhHHHHHhhHhcCCcEEEeccC-CChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhhccEEEEc--CC
Q 007349 301 SITDKDWEDIKFGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVA--RG 376 (607)
Q Consensus 301 ~lt~kD~~dI~~al~~gvD~I~~SfV-~sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~sDGImIg--RG 376 (607)
.+++++.+.+..-++.|+|.|++--. .....+.++-+.+++...++.||| -|-|.++..++.+ .-+|+|-|| +|
T Consensus 223 ~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~g 300 (479)
T PRK07807 223 GINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGPG 300 (479)
T ss_pred ccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccCC
Confidence 34556667777778899999887422 112334444455666667899999 9999999887765 348998865 33
Q ss_pred CcccCCCCC--CHH--HHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 377 DLGAELPIE--DVP--LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 377 DLg~elg~e--~v~--~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
-...--+.- .+| .+..++.++|++.|+|||. .....+. .|++.++..|+|++|+.
T Consensus 301 sictt~~~~~~~~p~~~av~~~~~~~~~~~~~via---------~ggi~~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 301 AMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWA---------DGGVRHP---RDVALALAAGASNVMIG 359 (479)
T ss_pred cccccccccCCchhHHHHHHHHHHHHHhcCCcEEe---------cCCCCCH---HHHHHHHHcCCCeeecc
Confidence 222222221 223 3335666667778999987 4444444 57889999999999985
No 53
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=93.36 E-value=2.8 Score=42.86 Aligned_cols=140 Identities=13% Similarity=0.170 Sum_probs=91.8
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCC--
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE-- 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e-- 385 (607)
..+..-.+.|+|+|.+ ++++..+..++-+++++.|....+..+-+|+ ++.+..++..+|.|++ ++++-|..
T Consensus 76 ~~i~~~~~~gad~I~~-H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~--~~~i~~~l~~vD~Vlv----MtV~PGf~GQ 148 (223)
T PRK08745 76 RIVPDFADAGATTISF-HPEASRHVHRTIQLIKSHGCQAGLVLNPATP--VDILDWVLPELDLVLV----MSVNPGFGGQ 148 (223)
T ss_pred HHHHHHHHhCCCEEEE-cccCcccHHHHHHHHHHCCCceeEEeCCCCC--HHHHHHHHhhcCEEEE----EEECCCCCCc
Confidence 3455556789999887 5676677777778889999999999988884 7789999999999999 77777762
Q ss_pred -CHHHHHHHHH---HHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHH
Q 007349 386 -DVPLLQEDII---RRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 461 (607)
Q Consensus 386 -~v~~~qk~II---~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~ 461 (607)
-.+...++|- +...+.+..+-+. +..+ -+ ...+......|+|.+++.+---....|.++++.|++
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~Ie-------VDGG-I~---~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~ 217 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLE-------IDGG-VK---ADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRA 217 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEE-------EECC-CC---HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 2232333322 2223445554331 0111 11 123446778899999886332112358999999987
Q ss_pred HHHH
Q 007349 462 VALR 465 (607)
Q Consensus 462 I~~~ 465 (607)
...+
T Consensus 218 ~~~~ 221 (223)
T PRK08745 218 AVAA 221 (223)
T ss_pred HHHh
Confidence 7644
No 54
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=93.31 E-value=2 Score=43.68 Aligned_cols=137 Identities=11% Similarity=0.074 Sum_probs=92.1
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCC--
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE-- 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e-- 385 (607)
..|..-.+.|+|+|.+ ++++..++.++-+++++.|....+..+=+| -++.++.++..+|.+++ ++++-|..
T Consensus 72 ~~i~~~~~~gad~i~~-H~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlv----MtV~PGfgGq 144 (220)
T PRK08883 72 RIIPDFAKAGASMITF-HVEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILL----MSVNPGFGGQ 144 (220)
T ss_pred HHHHHHHHhCCCEEEE-cccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEE----EEecCCCCCc
Confidence 4555667789999876 667777787777888999988888888888 47789999999999999 66665542
Q ss_pred -CHHHHHHHHHH---HHHHcC--CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHH
Q 007349 386 -DVPLLQEDIIR---RCRSMQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 459 (607)
Q Consensus 386 -~v~~~qk~II~---~c~~aG--KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m 459 (607)
-++...++|-+ ...+.| .|+.+. -.-. ...+...+..|+|++.+.+.--....|.++++.+
T Consensus 145 ~fi~~~lekI~~l~~~~~~~~~~~~I~vd--------GGI~-----~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l 211 (220)
T PRK08883 145 SFIPHTLDKLRAVRKMIDESGRDIRLEID--------GGVK-----VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEM 211 (220)
T ss_pred eecHhHHHHHHHHHHHHHhcCCCeeEEEE--------CCCC-----HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 23333333322 222333 555441 1111 2245577888999998874432235688999988
Q ss_pred HHHHH
Q 007349 460 HTVAL 464 (607)
Q Consensus 460 ~~I~~ 464 (607)
++...
T Consensus 212 ~~~~~ 216 (220)
T PRK08883 212 RAELA 216 (220)
T ss_pred HHHHH
Confidence 87653
No 55
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.05 E-value=1.6 Score=49.62 Aligned_cols=125 Identities=19% Similarity=0.216 Sum_probs=77.6
Q ss_pred CHHhHHHHHhhHhcCCcEEEeccC--CChhHHHHHHHHHHhcCCCceEEEe-ecChhhHhcHHHHHhhccEEEEc--CCC
Q 007349 303 TDKDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVA--RGD 377 (607)
Q Consensus 303 t~kD~~dI~~al~~gvD~I~~SfV--~sa~dv~~vr~~l~~~~~~i~IIAK-IEt~~av~NldeIl~~sDGImIg--RGD 377 (607)
.+.+.+.+...++.|+|.|++--- .+...+.. -+.+++..++..||++ |-|.+...++.+ .-+|+|.+| +|=
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~-i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~ 322 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEM-IKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGS 322 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHH-HHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCc
Confidence 445667777888999999987432 22222222 2334444456778774 999888766554 349999886 442
Q ss_pred cccC-----CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 378 LGAE-----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 378 Lg~e-----lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
-... .|.+.+ .....+.+.+++.++|||.. ...-+ -.|++.|+..|+|++|+.
T Consensus 323 ~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIad---------GGI~~---~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 323 ICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIAD---------GGISN---SGHIVKALTLGASTVMMG 380 (505)
T ss_pred cccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEe---------CCCCC---HHHHHHHHHcCCCEEEEc
Confidence 1111 122222 22333556667789999873 33333 357899999999999986
No 56
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=92.88 E-value=0.59 Score=57.01 Aligned_cols=88 Identities=14% Similarity=0.146 Sum_probs=75.6
Q ss_pred EEEeccCCChhHHHHHHHHHHhcC-----CCceEEEeecChhhHhcHHHHHhh-c----------------cEEEEcCCC
Q 007349 320 FYAVSFVKDAKVVHELKDYLKSCN-----ADIHVIVKIESADSIPNLHSIISA-S----------------DGAMVARGD 377 (607)
Q Consensus 320 ~I~~SfV~sa~dv~~vr~~l~~~~-----~~i~IIAKIEt~~av~NldeIl~~-s----------------DGImIgRGD 377 (607)
.+.+|+.++++|+.++..+.++.| ..+.|+...||.+.++|.++|++. . --||+|..|
T Consensus 548 ~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSD 627 (974)
T PTZ00398 548 AYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYSD 627 (974)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEeccc
Confidence 467899999999999888877643 247899999999999999999986 1 269999999
Q ss_pred cccCCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 007349 378 LGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 378 Lg~elg~----e~v~~~qk~II~~c~~aGKPviv 407 (607)
=+.+-|+ -.+..+|.++.+.|+++|+.+..
T Consensus 628 S~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~ 661 (974)
T PTZ00398 628 SGKDGGRLTSAWELYKAQERLSNIARQYGVEIRF 661 (974)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9988886 36889999999999999999865
No 57
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=92.87 E-value=0.43 Score=57.78 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=78.5
Q ss_pred CCcEEEeccCCChhHHHHHHHHHHhcC--------CCceEEEeecChhhHhcHHHHHhh-c---------------cEEE
Q 007349 317 QVDFYAVSFVKDAKVVHELKDYLKSCN--------ADIHVIVKIESADSIPNLHSIISA-S---------------DGAM 372 (607)
Q Consensus 317 gvD~I~~SfV~sa~dv~~vr~~l~~~~--------~~i~IIAKIEt~~av~NldeIl~~-s---------------DGIm 372 (607)
.+..+.+|+.++++|+.++..++.+.| ..+.|+...||.+.++|.++|++. . --||
T Consensus 486 ~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVM 565 (911)
T PRK00009 486 AIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVM 565 (911)
T ss_pred hhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEE
Confidence 556678999999999999988887765 257899999999999999999986 1 2699
Q ss_pred EcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 007349 373 VARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 373 IgRGDLg~elg~----e~v~~~qk~II~~c~~aGKPviv 407 (607)
+|..|=+-+-|+ -.+..+|+++.+.|+++|+++..
T Consensus 566 lGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~ 604 (911)
T PRK00009 566 LGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTL 604 (911)
T ss_pred eecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 999998888886 36889999999999999999865
No 58
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=92.83 E-value=0.34 Score=55.38 Aligned_cols=133 Identities=16% Similarity=0.153 Sum_probs=99.3
Q ss_pred CcEEEeccCCChhHHHHHHHHHHhc-------C----CCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcc-----cC
Q 007349 318 VDFYAVSFVKDAKVVHELKDYLKSC-------N----ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLG-----AE 381 (607)
Q Consensus 318 vD~I~~SfV~sa~dv~~vr~~l~~~-------~----~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg-----~e 381 (607)
-=-|.+|+|...+++.+.++++.+. + ...++=+++|-+..+-.+|+++..+|-+-||-.||. ++
T Consensus 559 ~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvD 638 (756)
T COG3605 559 NLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVD 638 (756)
T ss_pred CceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHh
Confidence 3458899999999999999888543 2 236688999999999999999999999999999863 33
Q ss_pred CCC-----------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCC
Q 007349 382 LPI-----------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 450 (607)
Q Consensus 382 lg~-----------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~ 450 (607)
=+- +.+..+.|+|.++|..+|+||-++.+| ...|--| .-.+..|++.+-++ -|++|+
T Consensus 639 R~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEM------Ag~Pl~A-----~~LigLGfrslSMn-~~~v~~ 706 (756)
T COG3605 639 RNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEM------AGDPLSA-----MALIGLGFRSLSMN-PRSVGP 706 (756)
T ss_pred cCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhh------cCChHHH-----HHHHhcCcCccccC-cccccc
Confidence 332 246678899999999999999887653 2334332 25677899998776 466664
Q ss_pred CHHHHHHHHHHHHHHhh
Q 007349 451 FPLKAVKVMHTVALRTE 467 (607)
Q Consensus 451 yPveaV~~m~~I~~~aE 467 (607)
|++|-+=+..+|
T Consensus 707 -----VK~ml~~ld~~~ 718 (756)
T COG3605 707 -----VKYLLRHLDLAE 718 (756)
T ss_pred -----HHHHHHhccHHH
Confidence 556554444443
No 59
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=92.79 E-value=0.39 Score=52.73 Aligned_cols=127 Identities=21% Similarity=0.289 Sum_probs=84.3
Q ss_pred CHHhHHHHHhhHhcCCcEEEe--ccCCChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhhccEEEEcCCCcc
Q 007349 303 TDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 379 (607)
Q Consensus 303 t~kD~~dI~~al~~gvD~I~~--SfV~sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~sDGImIgRGDLg 379 (607)
.+.|++.+..-.+.|+|+|.+ |-=+|.-.+. .-+|+++.-+++.||+ .+=|.+=.+|| |.+-+||+-||=|-=+
T Consensus 249 re~dK~rl~ll~~aGvdvviLDSSqGnS~~qie-mik~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsGS 325 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVILDSSQGNSIYQLE-MIKYIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSGS 325 (503)
T ss_pred ccchhHHHHHhhhcCCcEEEEecCCCcchhHHH-HHHHHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccCc
Confidence 356777788888899999987 3334444443 4578888888999888 55555544443 4455999999855433
Q ss_pred cCCCCC--CHH----HHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 380 AELPIE--DVP----LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 380 ~elg~e--~v~----~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
+-+--+ .+- .+--++.+.|+..|.|||- +---..+-+++.|+..|++.+|+.+
T Consensus 326 iCiTqevma~GrpQ~TAVy~va~~A~q~gvpviA------------DGGiq~~Ghi~KAl~lGAstVMmG~ 384 (503)
T KOG2550|consen 326 ICITQKVMACGRPQGTAVYKVAEFANQFGVPCIA------------DGGIQNVGHVVKALGLGASTVMMGG 384 (503)
T ss_pred eeeeceeeeccCCcccchhhHHHHHHhcCCceee------------cCCcCccchhHhhhhcCchhheecc
Confidence 322211 111 2223678889999999986 2222346788999999999999753
No 60
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=92.53 E-value=0.73 Score=54.77 Aligned_cols=135 Identities=19% Similarity=0.109 Sum_probs=98.4
Q ss_pred cCCCCCCHHhHHHHHhhH-h----c--CCcEEEeccCCChhHHHHHHHHHH---hcCCCceEEEeecChhhHhcHHHHHh
Q 007349 297 ANLPSITDKDWEDIKFGV-D----N--QVDFYAVSFVKDAKVVHELKDYLK---SCNADIHVIVKIESADSIPNLHSIIS 366 (607)
Q Consensus 297 ~~lp~lt~kD~~dI~~al-~----~--gvD~I~~SfV~sa~dv~~vr~~l~---~~~~~i~IIAKIEt~~av~NldeIl~ 366 (607)
...|.+-..+...|.... . . ..-.+.+||+++..+...+. .+. ..+++.++..+||.+.++-..|||++
T Consensus 567 ~~y~e~~~~~~~~i~~~a~~~~~~~~~~~~~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~ 645 (740)
T COG0574 567 SRYPEIYYREAFALECRAIKLVEEMGLTNVEIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAE 645 (740)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhcccCCcEEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHh
Confidence 345555555555553322 1 1 22246788999998887776 433 11223889999999999999999999
Q ss_pred hccEEEEcCCCcccC-CC-----------CCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHH
Q 007349 367 ASDGAMVARGDLGAE-LP-----------IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR 434 (607)
Q Consensus 367 ~sDGImIgRGDLg~e-lg-----------~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~ 434 (607)
..|++=+|..||.-- +| .+.|-.+.+..+..|+..++.++++.|.- ..|.-|+ -++.
T Consensus 646 ~~d~~S~gtndltq~tlg~~rd~~~~~~~~~~v~~li~~a~~~~~~~~~~~~icG~~~------~~p~~a~-----~~~e 714 (740)
T COG0574 646 YFDGFSIGSNDLTQLTLGLDRDSELFDERDPAVLKLIIIAIKAADSGGLLVGICGQAP------SDPHGAI-----FLVE 714 (740)
T ss_pred hcccceecccccccceeeeeccccccccccccHHHHHHHHHhcccccCcEEEEeccCC------CCcHHHH-----HHHH
Confidence 999999999998532 12 24688888999999999999999988833 3366655 6789
Q ss_pred hccceEEec
Q 007349 435 EGADAVMLS 443 (607)
Q Consensus 435 ~G~D~vmLs 443 (607)
.|.|+|+++
T Consensus 715 ~Gi~~Vs~n 723 (740)
T COG0574 715 LGIDSVSLN 723 (740)
T ss_pred cCCCeEecC
Confidence 999999966
No 61
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=92.27 E-value=12 Score=37.83 Aligned_cols=194 Identities=12% Similarity=0.068 Sum_probs=113.1
Q ss_pred CCCCHHhHHH-HHhhHhcCCcEEEeccCCCh------hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEE
Q 007349 300 PSITDKDWED-IKFGVDNQVDFYAVSFVKDA------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGA 371 (607)
Q Consensus 300 p~lt~kD~~d-I~~al~~gvD~I~~SfV~sa------~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGI 371 (607)
..++..++.. +....+.|+|.|-+.+-... ++..++-+++.+.+.+..+.+..=+ +.+.++...+. .|.|
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i 91 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEV 91 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEE
Confidence 3456677654 45555789999988877766 6666655566665555566565533 24445555554 5666
Q ss_pred EEcCCCcccC---------CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEE
Q 007349 372 MVARGDLGAE---------LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVM 441 (607)
Q Consensus 372 mIgRGDLg~e---------lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vm 441 (607)
.+. +..+ .+.+.....-...++.++++|.++.+.+.. ...+.-+..++.+++. +...|+|.+.
T Consensus 92 ~i~---~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----~~~~~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 92 RIF---DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED----AFGCKTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred EEE---EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe----ecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 664 1111 222234555567888899999998774311 1111234455666555 5667999999
Q ss_pred ecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCCh
Q 007349 442 LSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRTG 513 (607)
Q Consensus 442 Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~sG 513 (607)
|. +|.=.-+|.+.-+.++.+...... ....-+.+ ++. .+|.+....|-..++-+|=-|-.|
T Consensus 165 l~-Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~H-------n~~--gla~an~laA~~aG~~~id~s~~G 225 (265)
T cd03174 165 LK-DTVGLATPEEVAELVKALREALPD-VPLGLHTH-------NTL--GLAVANSLAALEAGADRVDGSVNG 225 (265)
T ss_pred ec-hhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeC-------CCC--ChHHHHHHHHHHcCCCEEEecccc
Confidence 85 777778898888888777755542 22111111 111 233444455556676555444444
No 62
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=92.00 E-value=3.7 Score=45.60 Aligned_cols=125 Identities=20% Similarity=0.277 Sum_probs=77.4
Q ss_pred CHHhHHHHHhhHhcCCcEEEe--ccCCChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhhccEEEEcCCCcc
Q 007349 303 TDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLG 379 (607)
Q Consensus 303 t~kD~~dI~~al~~gvD~I~~--SfV~sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~sDGImIgRGDLg 379 (607)
++.+.+.+...++.|+|+|++ +.-. .+.+.++-+.+++.-++..+|+ -|-|.++..++.+. -+|+|.+|-|-=+
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~Gs 227 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPGS 227 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCCc
Confidence 455677778888999999984 3322 2344444445555445565655 78888877666542 4899998743211
Q ss_pred c-------CCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 380 A-------ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 380 ~-------elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
+ ..|.+.+ .+...+.+.+++.+.|||. ....-+- .|++.|+..|+|++|+.
T Consensus 228 ~c~tr~~~g~g~p~l-tai~~v~~~~~~~~vpVIA---------dGGI~~~---~Di~KALalGA~aVmvG 285 (404)
T PRK06843 228 ICTTRIVAGVGVPQI-TAICDVYEVCKNTNICIIA---------DGGIRFS---GDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCcceeecCCCCChH-HHHHHHHHHHhhcCCeEEE---------eCCCCCH---HHHHHHHHcCCCEEEEc
Confidence 1 1122211 2223344556677899887 3333333 47899999999999985
No 63
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=91.93 E-value=7 Score=40.08 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=77.7
Q ss_pred HHHHhhHhcCCcEEEecc--CCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEE---cCCCcccCC
Q 007349 308 EDIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMV---ARGDLGAEL 382 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~Sf--V~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImI---gRGDLg~el 382 (607)
+-+..+.+.|+|+|.++- ++..++..++.+++.+.|-+..+...=+|+ .+.+..+++.+|++++ -+|..+
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~--~e~l~~~~~~~~~~l~msv~~~~g~--- 166 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP--DLLIHRLSKLSPLFIYYGLRPATGV--- 166 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC--HHHHHHHHHhCCCEEEEEeCCCCCC---
Confidence 346777889999999874 455678888888888888877777766664 6778999999998873 234422
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 383 PIEDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 383 g~e~v~~~qk~II~~c~~a--GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.++.-....++..++. .+|+.+ -.+.-+.. ++..+...|+|+++..
T Consensus 167 ---~~~~~~~~~i~~lr~~~~~~~i~v---------~gGI~~~e---~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 167 ---PLPVSVERNIKRVRNLVGNKYLVV---------GFGLDSPE---DARDALSAGADGVVVG 214 (244)
T ss_pred ---CchHHHHHHHHHHHHhcCCCCEEE---------eCCcCCHH---HHHHHHHcCCCEEEEC
Confidence 2333334444444544 367665 33433333 4667778999998875
No 64
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.67 E-value=2.2 Score=48.66 Aligned_cols=122 Identities=14% Similarity=0.100 Sum_probs=68.8
Q ss_pred HHHHHhhHhcCCcEEEeccCCChh--HHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhhccEEEEcCCCcccC--
Q 007349 307 WEDIKFGVDNQVDFYAVSFVKDAK--VVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISASDGAMVARGDLGAE-- 381 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~sa~--dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~sDGImIgRGDLg~e-- 381 (607)
.+.+...++.|+|+|.+.-.+-.. .+..++.+-+..+..+.|++ .|.|+++.+.+-+ .-+|+|.||-|-=++-
T Consensus 244 ~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~Gs~c~t 321 (502)
T PRK07107 244 AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGGSICIT 321 (502)
T ss_pred HHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH--cCCCEEEECCCCCcCccc
Confidence 455566678899999876111111 12223332222333467777 7889888755543 3489999964322111
Q ss_pred -----CCCCCHHHHHHHHHHHHHH----cC--CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 382 -----LPIEDVPLLQEDIIRRCRS----MQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 382 -----lg~e~v~~~qk~II~~c~~----aG--KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.|.+. ..+...+.+++++ .| +|+|. ..... .-.|++.|+..|+|++|+.
T Consensus 322 r~~~~~g~~~-~~ai~~~~~a~~~~~~~~g~~~~via---------dgGir---~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 322 REQKGIGRGQ-ATALIEVAKARDEYFEETGVYIPICS---------DGGIV---YDYHMTLALAMGADFIMLG 381 (502)
T ss_pred ccccCCCccH-HHHHHHHHHHHHHHHhhcCCcceEEE---------cCCCC---chhHHHHHHHcCCCeeeeC
Confidence 11111 1122233343332 36 78876 33332 2468999999999999985
No 65
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=91.50 E-value=6.9 Score=40.22 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=94.0
Q ss_pred HHHHhhHhcCCcEEEeccCCCh-hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCC-
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDA-KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE- 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa-~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e- 385 (607)
+.|..-.+.|+|+|.+ +++.. .+...+-+++++.|.+..|..+-+|+ ++.++.++..+|.|++ ++++-|..
T Consensus 73 ~~i~~~~~aGad~it~-H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~--~~~l~~~l~~vD~VLv----MsV~PGf~G 145 (229)
T PRK09722 73 DYIDQLADAGADFITL-HPETINGQAFRLIDEIRRAGMKVGLVLNPETP--VESIKYYIHLLDKITV----MTVDPGFAG 145 (229)
T ss_pred HHHHHHHHcCCCEEEE-CccCCcchHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHhcCEEEE----EEEcCCCcc
Confidence 4566667789999877 55644 46777778889999999999999985 6889999999999999 77777662
Q ss_pred --CHHHHHHHHHHH---HHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCC--CCHHHHHHH
Q 007349 386 --DVPLLQEDIIRR---CRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KFPLKAVKV 458 (607)
Q Consensus 386 --~v~~~qk~II~~---c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G--~yPveaV~~ 458 (607)
-.+...++|-+. ..++|..+.+. +... -+. .-+......|+|.+++.+---.| .-|.++++.
T Consensus 146 Q~fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGG-I~~---~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~ 214 (229)
T PRK09722 146 QPFIPEMLDKIAELKALRERNGLEYLIE-------VDGS-CNQ---KTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDI 214 (229)
T ss_pred hhccHHHHHHHHHHHHHHHhcCCCeEEE-------EECC-CCH---HHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHH
Confidence 233333333332 23455454331 1222 111 12446678899999886321223 358999999
Q ss_pred HHHHHHHhh
Q 007349 459 MHTVALRTE 467 (607)
Q Consensus 459 m~~I~~~aE 467 (607)
|++...++.
T Consensus 215 l~~~~~~~~ 223 (229)
T PRK09722 215 MTAQIEAAT 223 (229)
T ss_pred HHHHHHHhh
Confidence 998766554
No 66
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=91.29 E-value=5.2 Score=43.12 Aligned_cols=127 Identities=20% Similarity=0.316 Sum_probs=76.3
Q ss_pred CCCHHhHHHHHhhHhcC--CcEEEec--cCCChhHHHHHHHHHHhcCCCceEEEe-ecChhhHhcHHHHHhhccEEEEc-
Q 007349 301 SITDKDWEDIKFGVDNQ--VDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVA- 374 (607)
Q Consensus 301 ~lt~kD~~dI~~al~~g--vD~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IIAK-IEt~~av~NldeIl~~sDGImIg- 374 (607)
..+++|.+.+..-++.| +|+|.+- .-.+..-+..++. +.+.-+.+.+|++ +-|.+....+.+ .-+|+|.++
T Consensus 90 G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~~ 166 (321)
T TIGR01306 90 GVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVGI 166 (321)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEECC
Confidence 35778888888888888 6988763 2233333333433 4443456778888 988877765543 238999987
Q ss_pred -CCCcc---cCCCCCCHHHHH-HHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 375 -RGDLG---AELPIEDVPLLQ-EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 375 -RGDLg---~elg~e~v~~~q-k~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
+|=-. ...|. ..+..| ..|.+.+.+..+|+|. .....+ -.|++.|+..|+|++|+.
T Consensus 167 G~G~~~~tr~~~g~-g~~~~~l~ai~ev~~a~~~pVIa---------dGGIr~---~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 167 GPGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIA---------DGGIRT---HGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCccccceeeecc-CCCchHHHHHHHHHHhcCCeEEE---------ECCcCc---HHHHHHHHHcCCCEEeec
Confidence 33210 01111 111112 2244444455788776 333333 368999999999999996
No 67
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=90.87 E-value=23 Score=36.98 Aligned_cols=151 Identities=11% Similarity=0.148 Sum_probs=95.3
Q ss_pred CCHHhHHHHHhhH-hcCCcEEEeccCCChhH----------HHHHHHHHHhcCCCceEEEeecChhh-HhcHHHHHhh-c
Q 007349 302 ITDKDWEDIKFGV-DNQVDFYAVSFVKDAKV----------VHELKDYLKSCNADIHVIVKIESADS-IPNLHSIISA-S 368 (607)
Q Consensus 302 lt~kD~~dI~~al-~~gvD~I~~SfV~sa~d----------v~~vr~~l~~~~~~i~IIAKIEt~~a-v~NldeIl~~-s 368 (607)
+|..++..|...+ +.|+|+|=+.|....++ ...++........+.++.+..-.... ++.++..... .
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv 96 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVV 96 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCc
Confidence 5778887776665 57999998877654321 34445544432236777777766542 2233333332 5
Q ss_pred cEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHH-HHhccceEEeccccc
Q 007349 369 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETA 447 (607)
Q Consensus 369 DGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ETa 447 (607)
|.|.++ .+...+ ...+++++.++++|..|.+. +.++ ..-+..++.+.+.. ...|+|.+.|. +|.
T Consensus 97 ~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~--~~~a----~~~~~~~~~~~~~~~~~~g~~~i~l~-DT~ 161 (266)
T cd07944 97 DMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFFN--LMAI----SGYSDEELLELLELVNEIKPDVFYIV-DSF 161 (266)
T ss_pred CEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEEE--EEee----cCCCHHHHHHHHHHHHhCCCCEEEEe-cCC
Confidence 777764 333344 33466788899999887653 2222 22455666666644 55699999995 898
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 007349 448 HGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 448 ~G~yPveaV~~m~~I~~~aE 467 (607)
=..+|.+.-+.+..+.....
T Consensus 162 G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 162 GSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 88999998888888765443
No 68
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=90.47 E-value=5.9 Score=44.89 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=80.9
Q ss_pred CCCHHhHHHHHhhHhcCCcEEEe--ccCCChhHHHHHHHHHHhcCCCceEEEe-ecChhhHhcHHHHHhhccEEEEcC--
Q 007349 301 SITDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVAR-- 375 (607)
Q Consensus 301 ~lt~kD~~dI~~al~~gvD~I~~--SfV~sa~dv~~vr~~l~~~~~~i~IIAK-IEt~~av~NldeIl~~sDGImIgR-- 375 (607)
.+.+.+.+.+..-++.|+|.|++ +.-++ +.+.++-+.+.....++.||+= +-|+++..++.+ .-+|+|-||=
T Consensus 221 ~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~--~G~d~i~vg~g~ 297 (475)
T TIGR01303 221 GINGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLE--AGANIIKVGVGP 297 (475)
T ss_pred eeCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHH--hCCCEEEECCcC
Confidence 34555666777777899999886 33233 4444545556655567889985 777777766554 2378887662
Q ss_pred CCcccCCCCC--CH--HHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 376 GDLGAELPIE--DV--PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 376 GDLg~elg~e--~v--~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
|=-...=.+. .+ ..+--...+.+++.|+|+|- .....+- .|++.|+..|+|++|+.+
T Consensus 298 Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~via---------dGgi~~~---~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 298 GAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWA---------DGGVRHP---RDVALALAAGASNVMVGS 358 (475)
T ss_pred CccccCccccCCCCchHHHHHHHHHHHHHcCCcEEE---------eCCCCCH---HHHHHHHHcCCCEEeech
Confidence 2111110111 12 22333566666888999876 4444443 579999999999999974
No 69
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=90.45 E-value=7.1 Score=39.07 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=72.8
Q ss_pred hHHHHHhhHhcCCcEEEec--cCCCh--hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCccc
Q 007349 306 DWEDIKFGVDNQVDFYAVS--FVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 380 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~S--fV~sa--~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~ 380 (607)
+.+.+..+.+.|+|+|.+- ...++ +.+.++.+.+.+. ..+.+++-+-|.+ .+...... +|.+.+..+++..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~e---e~~~a~~~G~d~i~~~~~g~t~ 152 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLE---EGLAAQKLGFDFIGTTLSGYTE 152 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHH---HHHHHHHcCCCEEEcCCceeec
Confidence 4456788889999987653 22223 5666666666554 5677776544332 22222222 6888775544422
Q ss_pred CC--CCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHH
Q 007349 381 EL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 458 (607)
Q Consensus 381 el--g~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~ 458 (607)
.- ........-+++.. ..++|++.+ ...-+. .|+..++..|+|++++.+. +-+ |.+..+.
T Consensus 153 ~~~~~~~~~~~~i~~i~~---~~~iPvia~---------GGI~t~---~~~~~~l~~GadgV~iGsa--i~~-~~~~~~~ 214 (221)
T PRK01130 153 ETKKPEEPDFALLKELLK---AVGCPVIAE---------GRINTP---EQAKKALELGAHAVVVGGA--ITR-PEEITKW 214 (221)
T ss_pred CCCCCCCcCHHHHHHHHH---hCCCCEEEE---------CCCCCH---HHHHHHHHCCCCEEEEchH--hcC-CHHHHHH
Confidence 11 11111222233322 237999873 333333 3455788899999999743 333 4455554
Q ss_pred HHH
Q 007349 459 MHT 461 (607)
Q Consensus 459 m~~ 461 (607)
+.+
T Consensus 215 ~~~ 217 (221)
T PRK01130 215 FVD 217 (221)
T ss_pred HHH
Confidence 444
No 70
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=90.04 E-value=6.3 Score=38.50 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=77.0
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCH
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDV 387 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v 387 (607)
+.+..+.+.|+|+|.++--.+ ++..+..+.+...+ +.++.-+......+.+.++...+|.+.++.-+-|.. + +..
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~-~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~t-g-~~~ 145 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEAT-DHLHRTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFG-G-QKF 145 (211)
T ss_pred HHHHHHHHcCCCEEEECccch-hhHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCC-C-ccc
Confidence 346677799999987765544 33333344444433 444444433334666777777789998875443321 1 111
Q ss_pred H-HHHHHHHHHHHH-----cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHH
Q 007349 388 P-LLQEDIIRRCRS-----MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 459 (607)
Q Consensus 388 ~-~~qk~II~~c~~-----aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m 459 (607)
+ ...+.+-+.++. ...|+.++ -.-.| .++..++..|+|++...+.-..-..|.++++.+
T Consensus 146 ~~~~~~~i~~~~~~~~~~~~~~pi~v~--------GGI~~-----env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 146 IPEVLEKIRKLRELIPENNLNLLIEVD--------GGINL-----ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred CHHHHHHHHHHHHHHHhcCCCeEEEEE--------CCCCH-----HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 1 112222121111 24788664 22222 346678889999999988776677788887754
No 71
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.83 E-value=10 Score=41.00 Aligned_cols=129 Identities=19% Similarity=0.327 Sum_probs=75.7
Q ss_pred CCHHhHHHHHhhHhcCC--cEEEeccC-CChhHHHHHHHHHHhcCCCceEEEe-ecChhhHhcHHHHHhhccEEEEcCCC
Q 007349 302 ITDKDWEDIKFGVDNQV--DFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISASDGAMVARGD 377 (607)
Q Consensus 302 lt~kD~~dI~~al~~gv--D~I~~SfV-~sa~dv~~vr~~l~~~~~~i~IIAK-IEt~~av~NldeIl~~sDGImIgRGD 377 (607)
.++++.+.+..-++.|+ |.|.+--. -.-+.+.++-+.+.+.-+++.||++ |-|.+...++.+ .-+|++.+|=|.
T Consensus 94 ~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~ 171 (326)
T PRK05458 94 VKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGP 171 (326)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCC
Confidence 35567777777778855 99988211 1123334444445555566889996 998887766554 238999987221
Q ss_pred ccc--C---CCCCCHHHHHHHHHHHH-HHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccc
Q 007349 378 LGA--E---LPIEDVPLLQEDIIRRC-RSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 445 (607)
Q Consensus 378 Lg~--e---lg~e~v~~~qk~II~~c-~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 445 (607)
=.. + .+. ..+.+|-..+..| +...+|+|. .....+. .|++.++..|+|++|+.+-
T Consensus 172 G~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIA---------dGGI~~~---~Di~KaLa~GA~aV~vG~~ 232 (326)
T PRK05458 172 GKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIA---------DGGIRTH---GDIAKSIRFGATMVMIGSL 232 (326)
T ss_pred CcccccccccCC-CCCccHHHHHHHHHHHcCCCEEE---------eCCCCCH---HHHHHHHHhCCCEEEechh
Confidence 111 1 111 1232233223333 335788776 4444444 4788999999999998743
No 72
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=89.73 E-value=5.9 Score=42.24 Aligned_cols=114 Identities=19% Similarity=0.198 Sum_probs=67.9
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCC
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPI 384 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~ 384 (607)
..+.++..++.++++|.++|-...+.+. .++.. .+.+++.+=|.+ ......+. +|+|.+--.+-+-..+.
T Consensus 76 ~~~~~~~~~~~~v~~v~~~~g~p~~~i~----~lk~~--g~~v~~~v~s~~---~a~~a~~~GaD~Ivv~g~eagGh~g~ 146 (307)
T TIGR03151 76 VDELVDLVIEEKVPVVTTGAGNPGKYIP----RLKEN--GVKVIPVVASVA---LAKRMEKAGADAVIAEGMESGGHIGE 146 (307)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcHHHHH----HHHHc--CCEEEEEcCCHH---HHHHHHHcCCCEEEEECcccCCCCCC
Confidence 3456677789999999988754433333 33333 477888875543 33333334 89998732233333332
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 385 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 385 e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.....+.+++. .+.++|+|.+. ..-+ -.|++.++..|+|++++.
T Consensus 147 ~~~~~ll~~v~---~~~~iPviaaG---------GI~~---~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 147 LTTMALVPQVV---DAVSIPVIAAG---------GIAD---GRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CcHHHHHHHHH---HHhCCCEEEEC---------CCCC---HHHHHHHHHcCCCEeecc
Confidence 22333344443 33479998853 3333 345778888999999986
No 73
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.34 E-value=12 Score=36.60 Aligned_cols=130 Identities=14% Similarity=0.123 Sum_probs=72.7
Q ss_pred HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceE-EEeecChhhHhcHHHHHh-hccEEEEcCCCcccCCCCCC
Q 007349 309 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHV-IVKIESADSIPNLHSIIS-ASDGAMVARGDLGAELPIED 386 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~I-IAKIEt~~av~NldeIl~-~sDGImIgRGDLg~elg~e~ 386 (607)
.++.+.+.|+|+|.++.-...+...++.+++++.|..+.+ +..-.|++-+ +. ++. -+|.+.+.++--+...+.+.
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~--~~-~~~~~~d~v~~~~~~~~~~~~~~~ 145 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKR--AK-LLKLGVDIVILHRGIDAQAAGGWW 145 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHH--HH-HHHCCCCEEEEcCcccccccCCCC
Confidence 4467788999999987655555566677777665543322 2344554433 22 454 48999887642222222122
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHH
Q 007349 387 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVK 457 (607)
Q Consensus 387 v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~ 457 (607)
.....+++.+ ....|+.+. ... + -..+..+...|+|++.+.+--..-..|.++++
T Consensus 146 ~~~~i~~~~~---~~~~~i~~~---------GGI-~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 146 PEDDLKKVKK---LLGVKVAVA---------GGI-T---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred CHHHHHHHHh---hcCCCEEEE---------CCc-C---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 2222222222 256777662 222 2 13577888899999998754333345666654
No 74
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=88.97 E-value=6.5 Score=40.23 Aligned_cols=136 Identities=10% Similarity=0.136 Sum_probs=87.1
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCC--
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE-- 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e-- 385 (607)
+.+..-.+.|+|+|.+ +++..+++.++-+++++.|....+.-+=+|+ ++.++.++..+|.|++ ++++=|+-
T Consensus 75 ~~i~~fa~agad~It~-H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll----MsVnPGfgGQ 147 (220)
T COG0036 75 RYIEAFAKAGADIITF-HAEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL----MSVNPGFGGQ 147 (220)
T ss_pred HHHHHHHHhCCCEEEE-EeccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE----EeECCCCccc
Confidence 4556667889999987 6788889999999999999999999999997 6779999999999999 77777662
Q ss_pred -CHHHHHHHHHHHHHH---cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHH
Q 007349 386 -DVPLLQEDIIRRCRS---MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 461 (607)
Q Consensus 386 -~v~~~qk~II~~c~~---aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~ 461 (607)
-.+...++|-+.-+. .| ++.+- +..+ -+ ..-+-.+...|+|.++..+---.++.-.++++.++.
T Consensus 148 ~Fi~~~l~Ki~~lr~~~~~~~-~~~Ie-------VDGG-I~---~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~ 215 (220)
T COG0036 148 KFIPEVLEKIRELRAMIDERL-DILIE-------VDGG-IN---LETIKQLAAAGADVFVAGSALFGADDYKATIRELRG 215 (220)
T ss_pred ccCHHHHHHHHHHHHHhcccC-CeEEE-------EeCC-cC---HHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHH
Confidence 233333333222221 22 44330 0111 11 112335566899998876522222224566665554
Q ss_pred H
Q 007349 462 V 462 (607)
Q Consensus 462 I 462 (607)
.
T Consensus 216 ~ 216 (220)
T COG0036 216 E 216 (220)
T ss_pred H
Confidence 4
No 75
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=88.84 E-value=9.8 Score=38.07 Aligned_cols=115 Identities=25% Similarity=0.277 Sum_probs=65.8
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCC
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPI 384 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~ 384 (607)
..+.++.+.+.|+|+|.++.-...+.+.. +.+ ..+.++.++.+. +.+..+.+. +|+|.+....-+-..+.
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~~~~~~~~~----~~~--~~i~~i~~v~~~---~~~~~~~~~gad~i~~~~~~~~G~~~~ 139 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFGPPAEVVER----LKA--AGIKVIPTVTSV---EEARKAEAAGADALVAQGAEAGGHRGT 139 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCHHHHHH----HHH--cCCEEEEeCCCH---HHHHHHHHcCCCEEEEeCcCCCCCCCc
Confidence 44667778889999999987644333333 332 247788887665 334444444 79887733221111111
Q ss_pred CCHHHHHHHHHHHHHH-cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 385 EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 385 e~v~~~qk~II~~c~~-aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.. ......++.+++ .++|++.+ ...-+ ..|+..++..|+|++++.
T Consensus 140 ~~--~~~~~~i~~i~~~~~~Pvi~~---------GGI~~---~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 140 FD--IGTFALVPEVRDAVDIPVIAA---------GGIAD---GRGIAAALALGADGVQMG 185 (236)
T ss_pred cc--cCHHHHHHHHHHHhCCCEEEE---------CCCCC---HHHHHHHHHcCCcEEEEc
Confidence 11 112233344333 37898873 33333 245677788999999996
No 76
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=88.22 E-value=12 Score=36.54 Aligned_cols=135 Identities=12% Similarity=0.091 Sum_probs=75.9
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCC-C-C
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELP-I-E 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg-~-e 385 (607)
+.++.+.+.|+|+|.+.--.. ++.....+.+...+.+..+. ++.....+.+.++...+|++.+..-+-|..=. + +
T Consensus 70 ~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 146 (210)
T TIGR01163 70 RYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIP 146 (210)
T ss_pred HHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccH
Confidence 446677799999988754332 34444445565556554443 45444577788888778998886533322111 0 1
Q ss_pred CHHHHHHHHHHHHHHc--CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHH
Q 007349 386 DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 458 (607)
Q Consensus 386 ~v~~~qk~II~~c~~a--GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~ 458 (607)
......+++.+..++. ++|+.++ ... +. ..+..++..|+|++.+.+.--.-.-|.++++.
T Consensus 147 ~~~~~i~~i~~~~~~~~~~~~i~v~---------GGI-~~---env~~l~~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 147 DTLEKIREVRKMIDENGLSILIEVD---------GGV-ND---DNARELAEAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEE---------CCc-CH---HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence 1111222333333333 3577553 222 11 34667788999999988655434457666654
No 77
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.13 E-value=10 Score=42.97 Aligned_cols=123 Identities=23% Similarity=0.198 Sum_probs=75.0
Q ss_pred hHHHHHhhHhcCCcEEEec--cCCChhHHHHHHHHHHhcCCCce-EEEeecChhhHhcHHHHHhhccEEEEcCCCcccCC
Q 007349 306 DWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIH-VIVKIESADSIPNLHSIISASDGAMVARGDLGAEL 382 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~S--fV~sa~dv~~vr~~l~~~~~~i~-IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~el 382 (607)
+.+.+..-++.|+|.+.+- .-++ ..+.+..+.+.....++. ++.-+-|++...++.+. -+|+|-+|=|--+.+.
T Consensus 229 ~~e~a~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~~ 305 (486)
T PRK05567 229 NEERAEALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGSICT 305 (486)
T ss_pred hHHHHHHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCcccc
Confidence 4566667778899987653 2222 344444455555444555 45678888777665542 3799987633222111
Q ss_pred CC--C----CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 383 PI--E----DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 383 g~--e----~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.. . .-..+..++.+.|++.++|+|. .....+- .|++.|+..|+|++|+.
T Consensus 306 ~r~~~~~g~p~~~~~~~~~~~~~~~~~~via---------dGGi~~~---~di~kAla~GA~~v~~G 360 (486)
T PRK05567 306 TRIVAGVGVPQITAIADAAEAAKKYGIPVIA---------DGGIRYS---GDIAKALAAGASAVMLG 360 (486)
T ss_pred ceeecCCCcCHHHHHHHHHHHhccCCCeEEE---------cCCCCCH---HHHHHHHHhCCCEEEEC
Confidence 11 0 1223344566677778899886 4444444 57899999999999985
No 78
>PRK08227 autoinducer 2 aldolase; Validated
Probab=88.09 E-value=3.9 Score=42.89 Aligned_cols=143 Identities=17% Similarity=0.202 Sum_probs=80.6
Q ss_pred HHHhhHhcCCcEEEec-cCCChhHHHHHH---HHHHhcC-CCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCC
Q 007349 309 DIKFGVDNQVDFYAVS-FVKDAKVVHELK---DYLKSCN-ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELP 383 (607)
Q Consensus 309 dI~~al~~gvD~I~~S-fV~sa~dv~~vr---~~l~~~~-~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg 383 (607)
+++.|+..|+|.|.+. |+-+..+-..++ +..+++. ..+++++....-..+.|=.++++.+-.+ | .+||+++=
T Consensus 99 sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRi--a-aELGADiV 175 (264)
T PRK08227 99 DMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRI--A-AEMGAQII 175 (264)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHH--H-HHHcCCEE
Confidence 3556889999988774 444544433343 3333333 2366777332222244433344332110 0 23333321
Q ss_pred CCCHH-HHHHHHHHHHHHcCCCEEEEcccchhhhcCCC-CChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHH
Q 007349 384 IEDVP-LLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 461 (607)
Q Consensus 384 ~e~v~-~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~-PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~ 461 (607)
.-..+ ...+++++. ...||++| -.|. +++.-...++.++..|+-++...----.=..|...++.++.
T Consensus 176 K~~y~~~~f~~vv~a---~~vPVvia--------GG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~ 244 (264)
T PRK08227 176 KTYYVEEGFERITAG---CPVPIVIA--------GGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHA 244 (264)
T ss_pred ecCCCHHHHHHHHHc---CCCcEEEe--------CCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHH
Confidence 00111 345566664 46899996 3343 33333888999999999999876555555788888999888
Q ss_pred HHHH
Q 007349 462 VALR 465 (607)
Q Consensus 462 I~~~ 465 (607)
|.++
T Consensus 245 IVh~ 248 (264)
T PRK08227 245 VVHE 248 (264)
T ss_pred HHhC
Confidence 8753
No 79
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.07 E-value=29 Score=36.27 Aligned_cols=147 Identities=17% Similarity=0.222 Sum_probs=75.9
Q ss_pred HHhHHH-HHhhHhcCCcEEEecc------------CCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh---
Q 007349 304 DKDWED-IKFGVDNQVDFYAVSF------------VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--- 367 (607)
Q Consensus 304 ~kD~~d-I~~al~~gvD~I~~Sf------------V~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~--- 367 (607)
.+|..+ .+.+.+.|+|+|-+.| -.+++.+.++-+.+.+. -+++|++|| ++ ..++..+|++.
T Consensus 101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl-~~-~~~~~~~~a~~~~~ 177 (296)
T cd04740 101 VEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKL-TP-NVTDIVEIARAAEE 177 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEe-CC-CchhHHHHHHHHHH
Confidence 345533 3455677999986643 23444444433333332 268899998 33 23345555542
Q ss_pred --ccEEEE-----cCC-Cccc-------C----CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhh
Q 007349 368 --SDGAMV-----ARG-DLGA-------E----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSD 428 (607)
Q Consensus 368 --sDGImI-----gRG-DLg~-------e----lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~D 428 (607)
+|+|.+ ++. |+.. . -|....+...+.+-+..+..++|+|.. ...-+. .|
T Consensus 178 ~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~---------GGI~~~---~d 245 (296)
T cd04740 178 AGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGV---------GGIASG---ED 245 (296)
T ss_pred cCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEE---------CCCCCH---HH
Confidence 688765 211 2210 0 011112223333333344458998873 333333 46
Q ss_pred HHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhh
Q 007349 429 IAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 429 v~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 467 (607)
+..++..|+|+|++..---. -|--.-++.+.+.+.+|
T Consensus 246 a~~~l~~GAd~V~igra~l~--~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 246 ALEFLMAGASAVQVGTANFV--DPEAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHcCCCEEEEchhhhc--ChHHHHHHHHHHHHHHH
Confidence 77889999999999744333 45333334444443344
No 80
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=87.38 E-value=33 Score=37.39 Aligned_cols=156 Identities=13% Similarity=0.109 Sum_probs=96.1
Q ss_pred CCCHHhHHHHHhh-HhcCCcEEEecc-CCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEE--cC
Q 007349 301 SITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMV--AR 375 (607)
Q Consensus 301 ~lt~kD~~dI~~a-l~~gvD~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImI--gR 375 (607)
.++..|+..|... .+.|+|.|=+.| +.+.++...++...+ .+.+..+.+.+-. -.+.++..++. .|.|.+ +-
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 94 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARA--LKKDIDKAIDCGVDSIHTFIAT 94 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEccc--CHHHHHHHHHcCcCEEEEEEcC
Confidence 3577887666554 467999987754 566777666665554 3556666665532 12334444443 565554 32
Q ss_pred CCccc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEEecccccCCC
Q 007349 376 GDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGK 450 (607)
Q Consensus 376 GDLg~----elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ETa~G~ 450 (607)
.|+-. ....+++.....+.++.|++.|..+.+.-. ....-+...+.+++. +...|+|.+.|. +|.=.-
T Consensus 95 Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G~~ 167 (363)
T TIGR02090 95 SPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEEAGADRINIA-DTVGVL 167 (363)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCCcc
Confidence 33211 112234556667888999999998866321 223334444555544 456799999996 788888
Q ss_pred CHHHHHHHHHHHHHHh
Q 007349 451 FPLKAVKVMHTVALRT 466 (607)
Q Consensus 451 yPveaV~~m~~I~~~a 466 (607)
+|.+.-+.+..+....
T Consensus 168 ~P~~v~~li~~l~~~~ 183 (363)
T TIGR02090 168 TPQKMEELIKKLKENV 183 (363)
T ss_pred CHHHHHHHHHHHhccc
Confidence 9999888888876443
No 81
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=87.01 E-value=1.4 Score=52.24 Aligned_cols=122 Identities=17% Similarity=0.172 Sum_probs=86.9
Q ss_pred EecCCCccccCCCccCCCCCCHHhHHHHHhhH----hcCCcE---EEeccCCChhHHHHHHHHHHhcCCC------ceEE
Q 007349 283 ELKSRRHLNVRGKSANLPSITDKDWEDIKFGV----DNQVDF---YAVSFVKDAKVVHELKDYLKSCNAD------IHVI 349 (607)
Q Consensus 283 ~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al----~~gvD~---I~~SfV~sa~dv~~vr~~l~~~~~~------i~II 349 (607)
.|.+++++--|+. .....|.+.++-.+.+. +.|.|. ..+|+.+++.|+-++.=++++.|-- +.|+
T Consensus 446 EL~s~RPL~p~~~--~~Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~Vv 523 (910)
T COG2352 446 ELSSRRPLLPPFW--QPSEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVV 523 (910)
T ss_pred HhcCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCccccc
Confidence 4556666555443 23344555544443332 335553 3579999999999998888888743 8899
Q ss_pred EeecChhhHhcHHHHHhh-----------c-----cEEEEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEE
Q 007349 350 VKIESADSIPNLHSIISA-----------S-----DGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVI 406 (607)
Q Consensus 350 AKIEt~~av~NldeIl~~-----------s-----DGImIgRGDLg~elg~----e~v~~~qk~II~~c~~aGKPvi 406 (607)
..-||.+-++|...|+.. . --||+|-.|=.-+=|+ -.+..+|+.+++.|+++|+-.-
T Consensus 524 PLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr 600 (910)
T COG2352 524 PLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR 600 (910)
T ss_pred cccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE
Confidence 999999999999999985 1 2488887665555554 2588899999999999998763
No 82
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=86.84 E-value=16 Score=38.67 Aligned_cols=126 Identities=19% Similarity=0.279 Sum_probs=70.9
Q ss_pred HhHHHH-HhhHhcCCcEEEec----cC-----------CChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-
Q 007349 305 KDWEDI-KFGVDNQVDFYAVS----FV-----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA- 367 (607)
Q Consensus 305 kD~~dI-~~al~~gvD~I~~S----fV-----------~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~- 367 (607)
.|+.+. +...+.|+|+|-+. .. ++++.+.++-+.+.+ ..+++|++||- + .+.++.++++.
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~-~~~~Pv~vKl~-~-~~~~~~~~a~~~ 189 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVRE-AVKIPVIAKLT-P-NITDIREIARAA 189 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHH-hcCCCeEEECC-C-CchhHHHHHHHH
Confidence 555444 33444688887653 22 233444444444433 23588999994 3 44566677663
Q ss_pred ----ccEEEEc-----CCCcc---------c----CC----CCCCHHHHHHHHHHHHHHc--CCCEEEEcccchhhhcCC
Q 007349 368 ----SDGAMVA-----RGDLG---------A----EL----PIEDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHP 419 (607)
Q Consensus 368 ----sDGImIg-----RGDLg---------~----el----g~e~v~~~qk~II~~c~~a--GKPvivaTqmLeSM~~~~ 419 (607)
+|||.+. |-++- + .. |....+...+.|-+..+.. ..|+|-. ..
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~---------GG 260 (299)
T cd02940 190 KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGI---------GG 260 (299)
T ss_pred HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEE---------CC
Confidence 6998742 11110 0 00 1123455566666666666 6787763 33
Q ss_pred CCChHhhhhHHHHHHhccceEEeccc
Q 007349 420 TPTRAEVSDIAIAVREGADAVMLSGE 445 (607)
Q Consensus 420 ~PtrAEv~Dv~nav~~G~D~vmLs~E 445 (607)
.-+ ..|++.++..|+|+||+...
T Consensus 261 I~~---~~da~~~l~aGA~~V~i~ta 283 (299)
T cd02940 261 IES---WEDAAEFLLLGASVVQVCTA 283 (299)
T ss_pred CCC---HHHHHHHHHcCCChheEcee
Confidence 322 34788999999999999744
No 83
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=86.31 E-value=22 Score=36.58 Aligned_cols=135 Identities=16% Similarity=0.076 Sum_probs=86.2
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCC--CceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA--DIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~--~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e 385 (607)
+.|..-.+.|+|+|.+ ++++..++.+.-+++++.|. ...+..+-+| -++.++.++..+|.|+| ++++-|..
T Consensus 82 ~~i~~~~~aGad~It~-H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi----MtV~PGfg 154 (228)
T PRK08091 82 EVAKACVAAGADIVTL-QVEQTHDLALTIEWLAKQKTTVLIGLCLCPET--PISLLEPYLDQIDLIQI----LTLDPRTG 154 (228)
T ss_pred HHHHHHHHhCCCEEEE-cccCcccHHHHHHHHHHCCCCceEEEEECCCC--CHHHHHHHHhhcCEEEE----EEECCCCC
Confidence 4566667889999887 56766777777788888888 7778888887 47889999999999999 77776652
Q ss_pred ---CHHHHHHHHHHH---HHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCC--CCHHHHHH
Q 007349 386 ---DVPLLQEDIIRR---CRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG--KFPLKAVK 457 (607)
Q Consensus 386 ---~v~~~qk~II~~---c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G--~yPveaV~ 457 (607)
-.+...++|-+. -.++|.-+.+. +... -+. .-+......|+|.+++. |++- .-|.+.++
T Consensus 155 GQ~f~~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGG-I~~---~ti~~l~~aGaD~~V~G--SalF~~~d~~~~i~ 221 (228)
T PRK08091 155 TKAPSDLILDRVIQVENRLGNRRVEKLIS-------IDGS-MTL---ELASYLKQHQIDWVVSG--SALFSQGELKTTLK 221 (228)
T ss_pred CccccHHHHHHHHHHHHHHHhcCCCceEE-------EECC-CCH---HHHHHHHHCCCCEEEEC--hhhhCCCCHHHHHH
Confidence 223333333322 22344333221 0111 111 12346678899988875 4442 24778887
Q ss_pred HHHHH
Q 007349 458 VMHTV 462 (607)
Q Consensus 458 ~m~~I 462 (607)
.+++.
T Consensus 222 ~l~~~ 226 (228)
T PRK08091 222 EWKSS 226 (228)
T ss_pred HHHHh
Confidence 77653
No 84
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=86.22 E-value=17 Score=37.09 Aligned_cols=138 Identities=11% Similarity=0.134 Sum_probs=85.0
Q ss_pred HHHHhhHhcCCcEEEeccCCChhH-HHHHHHHHHhcCCCceEEEeecChhhHhcHHHHH--hhccEEEEcCCCcccCCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKV-VHELKDYLKSCNADIHVIVKIESADSIPNLHSII--SASDGAMVARGDLGAELPI 384 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~d-v~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl--~~sDGImIgRGDLg~elg~ 384 (607)
..++...+.|+|+|.+- .+...+ +.+.-+.+++.|..+.|-..-+| .++.+.+++ ...|.|++ ++++-|.
T Consensus 79 ~~i~~~~~~Gad~itvH-~ea~~~~~~~~l~~ik~~G~~~gval~p~t--~~e~l~~~l~~~~vD~Vl~----m~v~pG~ 151 (228)
T PTZ00170 79 KWVDDFAKAGASQFTFH-IEATEDDPKAVARKIREAGMKVGVAIKPKT--PVEVLFPLIDTDLVDMVLV----MTVEPGF 151 (228)
T ss_pred HHHHHHHHcCCCEEEEe-ccCCchHHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHccchhhhHHh----hhcccCC
Confidence 45566778899998874 444444 66777777777766665555444 689999998 66899886 7777776
Q ss_pred CCHH---HHHHHHHHHHHHcC-CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHH
Q 007349 385 EDVP---LLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 460 (607)
Q Consensus 385 e~v~---~~qk~II~~c~~aG-KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~ 460 (607)
.... ..-.++-+.....+ ..+.++ -.-.+ ..+..++..|+|.+++.+--..-..|.++++.+.
T Consensus 152 ~gq~~~~~~~~ki~~~~~~~~~~~I~Vd--------GGI~~-----~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~ 218 (228)
T PTZ00170 152 GGQSFMHDMMPKVRELRKRYPHLNIQVD--------GGINL-----ETIDIAADAGANVIVAGSSIFKAKDRKQAIELLR 218 (228)
T ss_pred CCcEecHHHHHHHHHHHHhcccCeEEEC--------CCCCH-----HHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHH
Confidence 4322 22233322222222 222221 11122 2455778889999988644333456999998888
Q ss_pred HHHHH
Q 007349 461 TVALR 465 (607)
Q Consensus 461 ~I~~~ 465 (607)
+...+
T Consensus 219 ~~~~~ 223 (228)
T PTZ00170 219 ESVQK 223 (228)
T ss_pred HHHHH
Confidence 76544
No 85
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=85.95 E-value=13 Score=37.50 Aligned_cols=142 Identities=16% Similarity=0.164 Sum_probs=80.4
Q ss_pred CCCCHHhHH-HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeec-----------ChhhHhcHHHHHhh
Q 007349 300 PSITDKDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIE-----------SADSIPNLHSIISA 367 (607)
Q Consensus 300 p~lt~kD~~-dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIE-----------t~~av~NldeIl~~ 367 (607)
|..+..|.+ -++.+.++|+|.+.++ +-.+...+..+. ....++.++- +..=+..+++.++.
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~---~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA---GDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC---CCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 555667774 4467888899999886 223333333331 1223343331 12223345666655
Q ss_pred -ccEE--EEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCC----CChHhhhh-HHHHHHhccce
Q 007349 368 -SDGA--MVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT----PTRAEVSD-IAIAVREGADA 439 (607)
Q Consensus 368 -sDGI--mIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~----PtrAEv~D-v~nav~~G~D~ 439 (607)
+|++ .+-.+++. ..++....+++.+.|++.|.|+++=+.. .... -+..++.. ...+...|+|.
T Consensus 89 Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~-----~g~~~~~~~~~~~i~~~~~~a~~~GaD~ 159 (235)
T cd00958 89 GADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYP-----RGPAVKNEKDPDLIAYAARIGAELGADI 159 (235)
T ss_pred CCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEec-----cCCcccCccCHHHHHHHHHHHHHHCCCE
Confidence 7877 55444442 3456667788999999999999872211 0000 12244444 44577889999
Q ss_pred EEecccccCCCCHHHHHHHHHHHHHH
Q 007349 440 VMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 440 vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
+-.+..+ -++.+.+++..
T Consensus 160 Ik~~~~~--------~~~~~~~i~~~ 177 (235)
T cd00958 160 VKTKYTG--------DAESFKEVVEG 177 (235)
T ss_pred EEecCCC--------CHHHHHHHHhc
Confidence 9985322 35556666543
No 86
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=85.83 E-value=22 Score=37.40 Aligned_cols=238 Identities=12% Similarity=-0.018 Sum_probs=131.7
Q ss_pred CCHHhHHHHHhhH-hc-CCcEEEec-cCCChhHHHHHHHHHHhcC-----CCceEEEeecChhhHhcHHHHHhh-ccEEE
Q 007349 302 ITDKDWEDIKFGV-DN-QVDFYAVS-FVKDAKVVHELKDYLKSCN-----ADIHVIVKIESADSIPNLHSIISA-SDGAM 372 (607)
Q Consensus 302 lt~kD~~dI~~al-~~-gvD~I~~S-fV~sa~dv~~vr~~l~~~~-----~~i~IIAKIEt~~av~NldeIl~~-sDGIm 372 (607)
++.+++..|...+ +. |+|.|=+. |.-++++...+++...... ....+++.+.+..++ +..++. .|.|.
T Consensus 16 ~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~A~~~g~~~i~ 92 (280)
T cd07945 16 FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSV---DWIKSAGAKVLN 92 (280)
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHH---HHHHHCCCCEEE
Confidence 5778887777764 55 99999774 5478877766666654221 135666666554443 443433 56555
Q ss_pred Ec--CCCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCC-CCChHhhhhHHH-HHHhccceEEecc
Q 007349 373 VA--RGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-TPTRAEVSDIAI-AVREGADAVMLSG 444 (607)
Q Consensus 373 Ig--RGDLg~e----lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~-~PtrAEv~Dv~n-av~~G~D~vmLs~ 444 (607)
+. -.|.-.. ...++.....+++++.|+++|..+.+.-. ...+| .-+...+.+++. +...|+|.+-|.
T Consensus 93 i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~----d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~- 167 (280)
T cd07945 93 LLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLE----DWSNGMRDSPDYVFQLVDFLSDLPIKRIMLP- 167 (280)
T ss_pred EEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEE----eCCCCCcCCHHHHHHHHHHHHHcCCCEEEec-
Confidence 53 1121111 12245666667889999999988765321 11222 112334556554 455699999995
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCChHHHHHHHhcCC
Q 007349 445 ETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRP 524 (607)
Q Consensus 445 ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~sG~tA~~is~~RP 524 (607)
+|.=.-.|.+.-++++.+...... ....-+ .-++. .+|.+....|-+.|+..|=-|-.|-- -|+
T Consensus 168 DT~G~~~P~~v~~l~~~l~~~~~~-~~i~~H-------~Hnd~--Gla~AN~laA~~aGa~~vd~s~~GlG------e~a 231 (280)
T cd07945 168 DTLGILSPFETYTYISDMVKRYPN-LHFDFH-------AHNDY--DLAVANVLAAVKAGIKGLHTTVNGLG------ERA 231 (280)
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCC-CeEEEE-------eCCCC--CHHHHHHHHHHHhCCCEEEEeccccc------ccc
Confidence 888888999998888888643321 111111 11222 34455556666777765544444433 111
Q ss_pred CCeEEEEeCCHHHHhhhccCCCeEEEEeccCCCHHHHHHHHHHHHHHcC
Q 007349 525 SSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKN 573 (607)
Q Consensus 525 ~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~d~d~~i~~Al~~ake~G 573 (607)
.-++-+.++.-|....|+.+ .-|.+.+.+.+-.+....|
T Consensus 232 -----GN~~~E~~v~~L~~~~g~~t-----~idl~~l~~~~~~v~~~~g 270 (280)
T cd07945 232 -----GNAPLASVIAVLKDKLKVKT-----NIDEKRLNRASRLVETFSG 270 (280)
T ss_pred -----cCccHHHHHHHHHHhcCCCc-----CcCHHHHHHHHHHHHHHhC
Confidence 11344556666644445542 2355555544443333333
No 87
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=85.67 E-value=0.89 Score=51.29 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=64.7
Q ss_pred cCCcEEEeccCCChhHHHHHHHHHHh----------------c-----CCCceEEEeecChhhHhcHHHHHhh-------
Q 007349 316 NQVDFYAVSFVKDAKVVHELKDYLKS----------------C-----NADIHVIVKIESADSIPNLHSIISA------- 367 (607)
Q Consensus 316 ~gvD~I~~SfV~sa~dv~~vr~~l~~----------------~-----~~~i~IIAKIEt~~av~NldeIl~~------- 367 (607)
..+..|.+|++.|++++..+.+++.. . -+.+.||..||...++-|+++|+..
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 36778999999999999987665421 1 1458999999999999999999986
Q ss_pred ---ccEEEEcCCCcccCCCCC----CHHHHHHHHHHHHHHcCCCEE
Q 007349 368 ---SDGAMVARGDLGAELPIE----DVPLLQEDIIRRCRSMQKPVI 406 (607)
Q Consensus 368 ---sDGImIgRGDLg~elg~e----~v~~~qk~II~~c~~aGKPvi 406 (607)
.=-+|+||.|=++..|+- -+-.+..++-+...+.|.|+.
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~Iy 244 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIY 244 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 136999999999999963 233444566666788899973
No 88
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=85.27 E-value=20 Score=35.41 Aligned_cols=139 Identities=12% Similarity=0.098 Sum_probs=77.0
Q ss_pred HHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCC
Q 007349 307 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIED 386 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~ 386 (607)
.+.+..+.+.|+|+|.+..-.+ ++.....+.+...+. .+..-+......+.+.++...+|.+.++.-+-|..-. ..
T Consensus 74 ~~~i~~~~~~g~d~v~vh~~~~-~~~~~~~~~~~~~~~--~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-~~ 149 (220)
T PRK05581 74 DRYVPDFAKAGADIITFHVEAS-EHIHRLLQLIKSAGI--KAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQ-KF 149 (220)
T ss_pred HHHHHHHHHcCCCEEEEeeccc-hhHHHHHHHHHHcCC--EEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcc-cc
Confidence 3456666789999988876544 333334444444443 3444443234467788888889988886533332211 11
Q ss_pred HHHHHH---HHHHHHHHcCCC--EEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHH
Q 007349 387 VPLLQE---DIIRRCRSMQKP--VIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 461 (607)
Q Consensus 387 v~~~qk---~II~~c~~aGKP--vivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~ 461 (607)
-+...+ ++...+...+.| +.++ -.-.| . ++..+...|+|++.+.+.-..=.-|.++++.+.+
T Consensus 150 ~~~~~~~i~~~~~~~~~~~~~~~i~v~--------GGI~~--~---nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~ 216 (220)
T PRK05581 150 IPEVLEKIRELRKLIDERGLDILIEVD--------GGINA--D---NIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRA 216 (220)
T ss_pred cHHHHHHHHHHHHHHHhcCCCceEEEE--------CCCCH--H---HHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 122222 232333333333 3232 22233 2 3445666899999988665544678888887766
Q ss_pred H
Q 007349 462 V 462 (607)
Q Consensus 462 I 462 (607)
+
T Consensus 217 ~ 217 (220)
T PRK05581 217 E 217 (220)
T ss_pred H
Confidence 5
No 89
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=85.25 E-value=9.1 Score=38.11 Aligned_cols=131 Identities=12% Similarity=0.124 Sum_probs=73.4
Q ss_pred HhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhc----HHHHHhh-----ccEEEEcCCCcccC
Q 007349 311 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPN----LHSIISA-----SDGAMVARGDLGAE 381 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~N----ldeIl~~-----sDGImIgRGDLg~e 381 (607)
+.+.+.|+|+|.+..--..+.+..+.+++++.|..+.+....++..+++. ++.++.. .||..+.+..
T Consensus 74 ~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~---- 149 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPATR---- 149 (215)
T ss_pred HHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECCCc----
Confidence 55667899999987654345577777777777777777777777666664 3333332 3454433211
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCE-EEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHH
Q 007349 382 LPIEDVPLLQEDIIRRCRSMQKPV-IVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 460 (607)
Q Consensus 382 lg~e~v~~~qk~II~~c~~aGKPv-ivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~ 460 (607)
.+++..+. +..+.++ ++. . .-.+ +-..+..++..|+|.+++..---...-|.++++.|+
T Consensus 150 --~~~i~~l~-------~~~~~~~~ivd-g-------GI~~---~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~ 209 (215)
T PRK13813 150 --PERVRYIR-------SRLGDELKIIS-P-------GIGA---QGGKAADAIKAGADYVIVGRSIYNAADPREAAKAIN 209 (215)
T ss_pred --chhHHHHH-------HhcCCCcEEEe-C-------CcCC---CCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHH
Confidence 12222211 1222232 221 0 1111 111256777889999988643222346999999998
Q ss_pred HHHHH
Q 007349 461 TVALR 465 (607)
Q Consensus 461 ~I~~~ 465 (607)
+.+++
T Consensus 210 ~~~~~ 214 (215)
T PRK13813 210 EEIRG 214 (215)
T ss_pred HHHhc
Confidence 76643
No 90
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=85.13 E-value=16 Score=42.49 Aligned_cols=175 Identities=13% Similarity=0.171 Sum_probs=104.9
Q ss_pred EecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEec--cCCChhHHHHHHHHHHhcCCCceEEEee--cChhhH
Q 007349 283 ELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKI--ESADSI 358 (607)
Q Consensus 283 ~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IIAKI--Et~~av 358 (607)
.++.+.+|.+---.-.-..=++...+.|....+.|+|.|-+. -.+.|+.+.++++.+.+.|.+++++|-| .-.-|+
T Consensus 20 ~iGg~~PI~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~ 99 (611)
T PRK02048 20 PLGGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVAD 99 (611)
T ss_pred eECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHH
Confidence 355666666532221111112333456666678899997653 3444555556666677788899999988 333343
Q ss_pred hcHHHHHhhccEEEEcCCCcccC---CC------------CCCHHHHHHHHHHHHHHcCCCEEEEcc-------cchhhh
Q 007349 359 PNLHSIISASDGAMVARGDLGAE---LP------------IEDVPLLQEDIIRRCRSMQKPVIVATN-------MLESMI 416 (607)
Q Consensus 359 ~NldeIl~~sDGImIgRGDLg~e---lg------------~e~v~~~qk~II~~c~~aGKPvivaTq-------mLeSM~ 416 (607)
+.++ .+|.|=|-||.++-. +. ++++..--+.++++|+++|+|+=+-++ +|+..
T Consensus 100 ~a~~----~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~y- 174 (611)
T PRK02048 100 VAAQ----YAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRY- 174 (611)
T ss_pred HHHH----hhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHh-
Confidence 3222 389999999999763 11 124455556799999999999855443 23221
Q ss_pred cCCCCC-hHh--hhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHH
Q 007349 417 DHPTPT-RAE--VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 463 (607)
Q Consensus 417 ~~~~Pt-rAE--v~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 463 (607)
..+|. ..| +.-+--+-..|++=+.+|--.+.-..++.+.+.|..-.
T Consensus 175 -g~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 175 -GDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred -CCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 12221 001 23344556789999999987777665555555555444
No 91
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=84.85 E-value=23 Score=35.26 Aligned_cols=128 Identities=16% Similarity=0.167 Sum_probs=72.3
Q ss_pred HHHHhhHhcCCcEEEeccCC-ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIE 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e 385 (607)
..++.+.+.|+|+|.+.-.. ..+++.++.++....| +.+++-+-+ .+.+.++.+. +|.+.+..-|.... + .
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~~---~~e~~~~~~~g~~~i~~t~~~~~~~-~-~ 157 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVHD---EEELERALALGAKIIGINNRDLKTF-E-V 157 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEECC---HHHHHHHHHcCCCEEEEeCCCcccc-C-c
Confidence 35778889999999864221 1234444433333333 333444433 3345555544 78898886554322 2 2
Q ss_pred CHHHHHHHHHHHHHH--cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHH
Q 007349 386 DVPLLQEDIIRRCRS--MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 458 (607)
Q Consensus 386 ~v~~~qk~II~~c~~--aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~ 458 (607)
++ +.+.+.++. .++|++. ....-+.. |+..+...|+|++++...-.....|.++++.
T Consensus 158 ~~----~~~~~l~~~~~~~~pvia---------~gGI~s~e---di~~~~~~Ga~gvivGsai~~~~~p~~~~~~ 216 (217)
T cd00331 158 DL----NTTERLAPLIPKDVILVS---------ESGISTPE---DVKRLAEAGADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred CH----HHHHHHHHhCCCCCEEEE---------EcCCCCHH---HHHHHHHcCCCEEEECHHHcCCCCHHHHHHh
Confidence 22 222222333 4678776 33333333 5667777799999998775666678777653
No 92
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=84.81 E-value=7.4 Score=42.42 Aligned_cols=204 Identities=18% Similarity=0.262 Sum_probs=118.2
Q ss_pred HHHHHhhHhcCCcEEEeccCCChhHHHHHHH----------------------HHHhcCCCceEEEeecChhhHhcHHHH
Q 007349 307 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKD----------------------YLKSCNADIHVIVKIESADSIPNLHSI 364 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~----------------------~l~~~~~~i~IIAKIEt~~av~NldeI 364 (607)
++.+..|++.|+|.|.++- ..++.+.++-+ .+...+.++..+..|.+++-++.+-+.
T Consensus 15 k~~vt~AlEsGvd~vv~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a~~~ 93 (354)
T PF01959_consen 15 KEVVTAALESGVDGVVVDD-EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEACEL 93 (354)
T ss_pred HHHHHHHHHcCCCEEEECH-hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHHHHH
Confidence 6778899999999987763 22222222211 112234556688999999999999988
Q ss_pred HhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 365 ISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 365 l~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
....|.+++--.|-. -+|+|. +|++....+.-++.. ..+-.|..-.+..+..|+|+++|..
T Consensus 94 ~~~~~~~iv~~~Dw~-iIPlEn-------liA~~~~~~~~i~a~-----------v~~~~eA~~~~~~LE~G~dGVll~~ 154 (354)
T PF01959_consen 94 AKRADYVIVEFRDWT-IIPLEN-------LIAALQGSSTKIIAV-----------VADAEEARVALEVLEKGVDGVLLDP 154 (354)
T ss_pred hccCCeEEEEcCCCc-EecHHH-------HHHHhcCCCceEEEE-----------eCCHHHHHHHHHHHhcCCCeEEECC
Confidence 888888888654443 245443 444444444444441 3444556667899999999999986
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhc-CCCCCC----------CCC-------CccccCC----CChh-HHHHHHHH-----
Q 007349 445 ETAHGKFPLKAVKVMHTVALRTES-SLPVSI----------TPP-------TQFSAHK----SHMG-DMFAFHST----- 496 (607)
Q Consensus 445 ETa~G~yPveaV~~m~~I~~~aE~-~~~~~~----------~~~-------~~~~~~~----~~~~-~~ia~~a~----- 496 (607)
+. | ..++.+...+.+.+. .+.... ... .+...-. .+.+ -.|-.++-
T Consensus 155 ~d-----~-~ei~~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~p 228 (354)
T PF01959_consen 155 DD-----P-AEIKALVALLKERSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESP 228 (354)
T ss_pred CC-----H-HHHHHHHHHHhhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCC
Confidence 63 3 455555555555322 221110 000 0000000 0000 00000000
Q ss_pred ---HHHhhcCC-CEEEEcCC-hHHHHHHHhcCCCCeEEEEeCCHH
Q 007349 497 ---TMANTLNT-PIIVFTRT-GSMAVILSHYRPSSTIFAFTNQER 536 (607)
Q Consensus 497 ---~~A~~l~a-~Iiv~T~s-G~tA~~is~~RP~~PIIAvT~d~~ 536 (607)
.--++.|| ++=.|+.. |..+++||-.+..-.|+++-.+-+
T Consensus 229 Yva~RPFRVNAGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~ 273 (354)
T PF01959_consen 229 YVASRPFRVNAGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGR 273 (354)
T ss_pred CCCCCCceEecCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCC
Confidence 01235788 66666655 777889999999999999998755
No 93
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=84.52 E-value=3.2 Score=41.86 Aligned_cols=82 Identities=16% Similarity=0.281 Sum_probs=52.0
Q ss_pred ccccCCCccCCCCCCHHhHHH-HHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEE----eecCh-hhHhcHH
Q 007349 289 HLNVRGKSANLPSITDKDWED-IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV----KIESA-DSIPNLH 362 (607)
Q Consensus 289 gvn~p~~~~~lp~lt~kD~~d-I~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIA----KIEt~-~av~Nld 362 (607)
|++++. .++.++++. .+.+.+.|+|||.++|..+ +..+++..+.. .+++++ ++.|. +.++|+.
T Consensus 133 g~~~~~------~~~~~~i~~~~~~a~~~GaD~Ik~~~~~~---~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~ 201 (235)
T cd00958 133 GPAVKN------EKDPDLIAYAARIGAELGADIVKTKYTGD---AESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVY 201 (235)
T ss_pred CCcccC------ccCHHHHHHHHHHHHHHCCCEEEecCCCC---HHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHH
Confidence 555554 246556554 5668899999999987654 44455544432 244433 22332 2568888
Q ss_pred HHHhh-ccEEEEcCCCcccC
Q 007349 363 SIISA-SDGAMVARGDLGAE 381 (607)
Q Consensus 363 eIl~~-sDGImIgRGDLg~e 381 (607)
+.++. ++|+.+||.=+..+
T Consensus 202 ~~~~~Ga~gv~vg~~i~~~~ 221 (235)
T cd00958 202 DAMEAGAAGVAVGRNIFQRP 221 (235)
T ss_pred HHHHcCCcEEEechhhhcCC
Confidence 88888 99999998655333
No 94
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=84.41 E-value=4.8 Score=43.85 Aligned_cols=154 Identities=16% Similarity=0.264 Sum_probs=84.3
Q ss_pred HHHHHhhHhcCCcEEEe--ccCCChhHHHHHHHHHHhcCCCceEEEee--cChhhHhcHHHHHhhccEEEEcCCCcccCC
Q 007349 307 WEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIVKI--ESADSIPNLHSIISASDGAMVARGDLGAEL 382 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~--SfV~sa~dv~~vr~~l~~~~~~i~IIAKI--Et~~av~NldeIl~~sDGImIgRGDLg~el 382 (607)
.+.|..-.+.|+|.|-+ |-.+.|+.+.++++.|.+.|.+++++|-| .-.-|++.++ . +|.|-|-||.++-++
T Consensus 34 v~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~---~-v~kiRINPGNi~~~~ 109 (359)
T PF04551_consen 34 VAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIE---A-VDKIRINPGNIVDEF 109 (359)
T ss_dssp HHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHH---C--SEEEE-TTTSS---
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHH---H-hCeEEECCCcccccc
Confidence 35556666789998755 44445555566677777788999999988 4555554433 3 899999999996322
Q ss_pred --CCCCHHHHHHHHHHHHHHcCCCEEEEcc--cchh-hhcCCCCChHh-----hhhHHHHHHhccceEEecccccCCCCH
Q 007349 383 --PIEDVPLLQEDIIRRCRSMQKPVIVATN--MLES-MIDHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFP 452 (607)
Q Consensus 383 --g~e~v~~~qk~II~~c~~aGKPvivaTq--mLeS-M~~~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETa~G~yP 452 (607)
+...+..--+.++++|+++|+|+=+-.+ =|+. |...--||..- ...+--+-..|+|=+.+|-=+ ..+
T Consensus 110 ~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKs---Sdv 186 (359)
T PF04551_consen 110 QEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEELGFDDIVISLKS---SDV 186 (359)
T ss_dssp -SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEB---SSH
T ss_pred cccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEe---CCh
Confidence 2235677888999999999999733221 1111 00000112111 222334445678878877443 345
Q ss_pred HHHHHHHHHHHHHhh
Q 007349 453 LKAVKVMHTVALRTE 467 (607)
Q Consensus 453 veaV~~m~~I~~~aE 467 (607)
..+|+.-+.++....
T Consensus 187 ~~~i~ayr~la~~~d 201 (359)
T PF04551_consen 187 PETIEAYRLLAERMD 201 (359)
T ss_dssp HHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcC
Confidence 566666555655544
No 95
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=84.21 E-value=28 Score=36.47 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=77.1
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCC-CC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-ED 386 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~-e~ 386 (607)
+-++.+.+.|+|++.++-. ..++..++.+.+.+.|-+...+..=.| -.+.+..|++.++|.+--=+-.|+ .|. ..
T Consensus 110 ~F~~~~~~aGvdgviipDL-P~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~Gv-TG~~~~ 185 (263)
T CHL00200 110 KFIKKISQAGVKGLIIPDL-PYEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGV-TGLKTE 185 (263)
T ss_pred HHHHHHHHcCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCC-CCCCcc
Confidence 4467778999999999876 457777888888877765444443334 467899999999865542111221 122 34
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 387 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 387 v~~~qk~II~~c~~a-GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
++.-.++.++..++. ++|+.+ --..-+.+ ++......|+|+++..
T Consensus 186 ~~~~~~~~i~~ir~~t~~Pi~v---------GFGI~~~e---~~~~~~~~GADGvVVG 231 (263)
T CHL00200 186 LDKKLKKLIETIKKMTNKPIIL---------GFGISTSE---QIKQIKGWNINGIVIG 231 (263)
T ss_pred ccHHHHHHHHHHHHhcCCCEEE---------ECCcCCHH---HHHHHHhcCCCEEEEC
Confidence 555556666666654 888776 22333333 4556777899999875
No 96
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=84.13 E-value=24 Score=38.50 Aligned_cols=204 Identities=16% Similarity=0.236 Sum_probs=119.9
Q ss_pred HHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHH----------------HhcCCCceEEEeecChhhHhcHHHHHhh
Q 007349 304 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYL----------------KSCNADIHVIVKIESADSIPNLHSIISA 367 (607)
Q Consensus 304 ~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l----------------~~~~~~i~IIAKIEt~~av~NldeIl~~ 367 (607)
+.+++.+..|++.|+|+|.+. .+++..++++- ...+.....+.+|.+++-.+.+.+....
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~----~~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVD----EEDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEEC----HHHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 677888999999999998764 35555544331 1223456788899999999999999988
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccccc
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 447 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa 447 (607)
.|.+++--.|-. -+|+| .+|++. ....-++. . .-+-.|..-.+..+..|+|+|+|..+.
T Consensus 89 ~~~viv~~~dW~-iIPlE-------nlIA~~-~~~~~l~a---------~--v~~~~eA~~a~~~LE~G~dGVvl~~~d- 147 (344)
T PRK02290 89 VDYVIVEGRDWT-IIPLE-------NLIADL-GQSGKIIA---------G--VADAEEAKLALEILEKGVDGVLLDPDD- 147 (344)
T ss_pred CCEEEEECCCCc-EecHH-------HHHhhh-cCCceEEE---------E--eCCHHHHHHHHHHhccCCCeEEECCCC-
Confidence 888888543432 24443 345555 33333333 1 233355556788999999999998663
Q ss_pred CCCCHHHHHHHHHHHHHHhhcCCCCCC----------CCC-------CccccCC-----CChhHHHHHHHH--------H
Q 007349 448 HGKFPLKAVKVMHTVALRTESSLPVSI----------TPP-------TQFSAHK-----SHMGDMFAFHST--------T 497 (607)
Q Consensus 448 ~G~yPveaV~~m~~I~~~aE~~~~~~~----------~~~-------~~~~~~~-----~~~~~~ia~~a~--------~ 497 (607)
| ..++.+...+.+.-..+.... ... .+...-. ++..-.|-.++- .
T Consensus 148 ----~-~ei~~~~~~~~~~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~ 222 (344)
T PRK02290 148 ----P-NEIKAIVALIEEAREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVAS 222 (344)
T ss_pred ----H-HHHHHHHHHHhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccC
Confidence 3 445555555544111111000 000 0000000 000000000000 0
Q ss_pred HHhhcCC-CEEEEcCC-hHHHHHHHhcCCCCeEEEEeCCHHH
Q 007349 498 MANTLNT-PIIVFTRT-GSMAVILSHYRPSSTIFAFTNQERI 537 (607)
Q Consensus 498 ~A~~l~a-~Iiv~T~s-G~tA~~is~~RP~~PIIAvT~d~~t 537 (607)
-.++.|| ++=.|+.. |..+++||-.+..-.|+++-.+-++
T Consensus 223 RPFRVNAGaVhaYv~~pgg~T~YLsEL~sG~eVlvVd~~G~t 264 (344)
T PRK02290 223 RPFRVNAGAVHAYVRVPGDKTRYLSELRSGDEVLVVDADGNT 264 (344)
T ss_pred CCeeEecCcceeEEEcCCCcchhhHhhcCCCEEEEEeCCCCE
Confidence 1235788 76667655 7788999999999999999987554
No 97
>PLN02334 ribulose-phosphate 3-epimerase
Probab=84.07 E-value=41 Score=34.00 Aligned_cols=140 Identities=12% Similarity=0.159 Sum_probs=77.7
Q ss_pred HHHhhHhcCCcEEEeccCC-ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh--ccEEEEcCCCcccCCCCC
Q 007349 309 DIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGAELPIE 385 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~--sDGImIgRGDLg~elg~e 385 (607)
.+..+.+.|+|+|.+..-+ ..+...+.-+.+...|..+.+...=.| -++.+.+++.. +|.|.+++-.=+.. + +
T Consensus 80 ~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~~v~pg~~-~-~ 155 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVMSVEPGFG-G-Q 155 (229)
T ss_pred HHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCCEEEEEEEecCCC-c-c
Confidence 3455578899998665432 222333333334444544444442223 45667888888 99998864332211 1 2
Q ss_pred CH-HHHHHHHHHHHHHc--CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHH
Q 007349 386 DV-PLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 462 (607)
Q Consensus 386 ~v-~~~qk~II~~c~~a--GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I 462 (607)
.. +....++ +..++. ++|+.+. .+. + ...+......|+|++.+.+.-.--..|.++++.+.+.
T Consensus 156 ~~~~~~~~~i-~~~~~~~~~~~I~a~---------GGI-~---~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~ 221 (229)
T PLN02334 156 SFIPSMMDKV-RALRKKYPELDIEVD---------GGV-G---PSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRAS 221 (229)
T ss_pred ccCHHHHHHH-HHHHHhCCCCcEEEe---------CCC-C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHH
Confidence 12 2222233 333332 4676552 111 2 2245677888999999876644345799999988876
Q ss_pred HHHh
Q 007349 463 ALRT 466 (607)
Q Consensus 463 ~~~a 466 (607)
..++
T Consensus 222 ~~~~ 225 (229)
T PLN02334 222 VEKA 225 (229)
T ss_pred HHHh
Confidence 6554
No 98
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=83.97 E-value=5.2 Score=40.60 Aligned_cols=152 Identities=18% Similarity=0.221 Sum_probs=94.1
Q ss_pred CCCCHH-hH-HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChh-----h-----HhcHHHHHhh
Q 007349 300 PSITDK-DW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESAD-----S-----IPNLHSIISA 367 (607)
Q Consensus 300 p~lt~k-D~-~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~-----a-----v~NldeIl~~ 367 (607)
|..+.. |. +.+..+++.|++.|.++ +.-+...++.+...+..+.++.....-. - +...++.++.
T Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~av~v~----p~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 13 GPMTGEEDIKKLCREAIEYGFDAVCVT----PGYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSEEEEE----GGGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEEC----HHHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 445555 65 66678899999999886 4455566666655455677887776422 2 4445555554
Q ss_pred -ccEEEEc--CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh---------hhhHHH-HHH
Q 007349 368 -SDGAMVA--RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---------VSDIAI-AVR 434 (607)
Q Consensus 368 -sDGImIg--RGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE---------v~Dv~n-av~ 434 (607)
+|+|-+- .+-++.+- .+.+....+++++.|+..|.|+|+ . +.|+..+ +...++ +..
T Consensus 89 GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIl---------E-~~l~~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVIL---------E-PYLRGEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp T-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEE---------E-ECECHHHBSSTTHHHHHHHHHHHHHH
T ss_pred CCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEE---------E-EecCchhhcccccHHHHHHHHHHHHH
Confidence 6665442 11111110 235566667899999999999998 4 5555555 333333 467
Q ss_pred hccceEEecccccCCCCHHHHHHHHHHHHHHhh
Q 007349 435 EGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 435 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 467 (607)
.|+|.+=.+.=.. ...-.+.++.|.+++..+.
T Consensus 158 ~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 158 LGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp TT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred hCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 8999987763333 4556788999999987665
No 99
>PRK14057 epimerase; Provisional
Probab=83.92 E-value=32 Score=35.99 Aligned_cols=140 Identities=11% Similarity=0.094 Sum_probs=90.3
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCC---------CceEEEeecChhhHhcHHHHHhhccEEEEcCCCc
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA---------DIHVIVKIESADSIPNLHSIISASDGAMVARGDL 378 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~---------~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDL 378 (607)
+.|..-.+.|+|+|.+ +++...++.+.-+++++.|. ...+..+-+| -++.++.++..+|.|+| +
T Consensus 89 ~~i~~~~~aGad~It~-H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv----M 161 (254)
T PRK14057 89 TAAQACVKAGAHCITL-QAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL----L 161 (254)
T ss_pred HHHHHHHHhCCCEEEE-eeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE----E
Confidence 4555556789999876 66766677676677877775 3677778887 57789999999999999 7
Q ss_pred ccCCCCC---CHHHHHHHHHHHH---HHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccC--CC
Q 007349 379 GAELPIE---DVPLLQEDIIRRC---RSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH--GK 450 (607)
Q Consensus 379 g~elg~e---~v~~~qk~II~~c---~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~--G~ 450 (607)
+++-|+. -.+...++|-+.. .+.|..+.+. +... -+. .-+...+..|+|.+++. |++ ..
T Consensus 162 tV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VDGG-I~~---~ti~~l~~aGad~~V~G--SalF~~~ 228 (254)
T PRK14057 162 AVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV-------IDGS-LTQ---DQLPSLIAQGIDRVVSG--SALFRDD 228 (254)
T ss_pred EECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE-------EECC-CCH---HHHHHHHHCCCCEEEEC--hHhhCCC
Confidence 7777762 2344444444322 2344343321 1111 111 12446788899988876 444 23
Q ss_pred CHHHHHHHHHHHHHHhh
Q 007349 451 FPLKAVKVMHTVALRTE 467 (607)
Q Consensus 451 yPveaV~~m~~I~~~aE 467 (607)
.+.++++.|+.+...+-
T Consensus 229 d~~~~i~~l~~~~~~~~ 245 (254)
T PRK14057 229 RLVENTRSWRAMFKVAG 245 (254)
T ss_pred CHHHHHHHHHHHHhhcC
Confidence 57888888887755554
No 100
>PRK00915 2-isopropylmalate synthase; Validated
Probab=83.88 E-value=39 Score=38.71 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=98.6
Q ss_pred CCCHHhHHHHHhhH-hcCCcEEEecc-CCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh---c--c--EE
Q 007349 301 SITDKDWEDIKFGV-DNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---S--D--GA 371 (607)
Q Consensus 301 ~lt~kD~~dI~~al-~~gvD~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~---s--D--GI 371 (607)
.+|..|+..|...+ +.|+|.|=+.| ..++.|...++.+.. ...+..+.+..-.. .+.+|..++. + + .+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~-~~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i 98 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIAR-TVKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHT 98 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHh-hCCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEE
Confidence 36778886665554 67999997766 457778877766554 34556666655322 2344444432 2 2 34
Q ss_pred EEcCCCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh---hhhHHHH-HHhccceEEec
Q 007349 372 MVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---VSDIAIA-VREGADAVMLS 443 (607)
Q Consensus 372 mIgRGDLg~e----lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE---v~Dv~na-v~~G~D~vmLs 443 (607)
+++-.|+-.+ ...+++.....+.++.|+++|..|.+. ...-+|++ +.+++.+ ...|+|.+.|.
T Consensus 99 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~---------~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~ 169 (513)
T PRK00915 99 FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS---------AEDATRTDLDFLCRVVEAAIDAGATTINIP 169 (513)
T ss_pred EECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE---------eCCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 5554555322 223456666678999999999988663 22333333 5555554 45699999995
Q ss_pred ccccCCCCHHHHHHHHHHHHHHh
Q 007349 444 GETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 444 ~ETa~G~yPveaV~~m~~I~~~a 466 (607)
+|.=+..|.+.-+++..+....
T Consensus 170 -DTvG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 170 -DTVGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred -cCCCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999888887654
No 101
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=83.88 E-value=33 Score=32.64 Aligned_cols=119 Identities=19% Similarity=0.145 Sum_probs=67.4
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCC-CceEEEeecCh-------hhHhcHHHHHhh-ccEEEEcCCCc
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESA-------DSIPNLHSIISA-SDGAMVARGDL 378 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~-~i~IIAKIEt~-------~av~NldeIl~~-sDGImIgRGDL 378 (607)
+.+++.++.|+|+|.+.. +-+..+++. ... ++++++++=.. +.++..+.-.+. +|++++.+. .
T Consensus 17 ~~~~~~~~~gv~gi~~~g----~~i~~~~~~---~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~-~ 88 (201)
T cd00945 17 KLCDEAIEYGFAAVCVNP----GYVRLAADA---LAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVIN-I 88 (201)
T ss_pred HHHHHHHHhCCcEEEECH----HHHHHHHHH---hCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEecc-H
Confidence 445778889999988764 333334443 344 78899998554 355666665555 899998531 1
Q ss_pred ccCCC--CCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCC--ChHhhhhHHH-HHHhccceEEec
Q 007349 379 GAELP--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP--TRAEVSDIAI-AVREGADAVMLS 443 (607)
Q Consensus 379 g~elg--~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~P--trAEv~Dv~n-av~~G~D~vmLs 443 (607)
..... .+.+...-+++.+.| ..+.|+++- ..|.. +..++...++ +...|+|++=.+
T Consensus 89 ~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy--------~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 89 GSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVI--------LETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred HHHhCCCHHHHHHHHHHHHHHh-cCCceEEEE--------EECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 11111 123334444555554 468998873 22222 2233444333 235799988654
No 102
>PRK08005 epimerase; Validated
Probab=83.74 E-value=27 Score=35.50 Aligned_cols=131 Identities=8% Similarity=0.049 Sum_probs=86.5
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCC--
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE-- 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e-- 385 (607)
..|..-.+.|+|+|.+ ++++..+..++-+++++.|....+-.+-+|+ ++.++.++...|.|+| ++++-|..
T Consensus 72 ~~i~~~~~~gad~It~-H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp--~~~i~~~l~~vD~Vlv----MsV~PGf~GQ 144 (210)
T PRK08005 72 RWLPWLAAIRPGWIFI-HAESVQNPSEILADIRAIGAKAGLALNPATP--LLPYRYLALQLDALMI----MTSEPDGRGQ 144 (210)
T ss_pred HHHHHHHHhCCCEEEE-cccCccCHHHHHHHHHHcCCcEEEEECCCCC--HHHHHHHHHhcCEEEE----EEecCCCccc
Confidence 4556667789999887 5676677777778888999999999998884 7778999999999999 77777763
Q ss_pred -CHHHHHHHHHHHHHHcCC-CEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccC--CCCHHHHHHHHH
Q 007349 386 -DVPLLQEDIIRRCRSMQK-PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAH--GKFPLKAVKVMH 460 (607)
Q Consensus 386 -~v~~~qk~II~~c~~aGK-PvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~--G~yPveaV~~m~ 460 (607)
-.+...++|-+..+.... .+-+ ... -+. .-+...+..|+|.+++. |++ ..-|.++++.|.
T Consensus 145 ~f~~~~~~KI~~l~~~~~~~~I~V---------DGG-I~~---~~i~~l~~aGad~~V~G--saiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 145 QFIAAMCEKVSQSREHFPAAECWA---------DGG-ITL---RAARLLAAAGAQHLVIG--RALFTTANYDVTLSQFT 208 (210)
T ss_pred eecHHHHHHHHHHHHhcccCCEEE---------ECC-CCH---HHHHHHHHCCCCEEEEC--hHhhCCCCHHHHHHHHh
Confidence 345555555544332211 2222 111 111 12346678899988886 344 234666666553
No 103
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=83.53 E-value=30 Score=35.48 Aligned_cols=145 Identities=18% Similarity=0.277 Sum_probs=77.5
Q ss_pred CCCCCCHHhHHHHHhhHhcCCcEEEe--cc---CCChhHHHHHH--------------HHHHhcC--CCceEEEeec-Ch
Q 007349 298 NLPSITDKDWEDIKFGVDNQVDFYAV--SF---VKDAKVVHELK--------------DYLKSCN--ADIHVIVKIE-SA 355 (607)
Q Consensus 298 ~lp~lt~kD~~dI~~al~~gvD~I~~--Sf---V~sa~dv~~vr--------------~~l~~~~--~~i~IIAKIE-t~ 355 (607)
..|.+ +.-.+.++...+.|+|++=+ || +-+...|.+.- +.+++.. .+++++.+.. ++
T Consensus 9 G~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 9 GDPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 45554 23345566666779998644 56 55555565321 2222211 2456666666 43
Q ss_pred ---hhHhcHHHHH-hh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHH
Q 007349 356 ---DSIPNLHSII-SA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA 430 (607)
Q Consensus 356 ---~av~NldeIl-~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~ 430 (607)
.|++++=+-+ +. +||+.+. || ++| -.++++..|+++|...+++ .+|..+...+..+
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~--------i~P~T~~~~i~~i- 148 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFL--------VAPTTPDERIKKI- 148 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEE--------eCCCCCHHHHHHH-
Confidence 2445543333 33 7999995 55 332 4578999999999977663 3443333333333
Q ss_pred HHHHhccceEEe---cccccCCC-CHHHHHHHHHHHHH
Q 007349 431 IAVREGADAVML---SGETAHGK-FPLKAVKVMHTVAL 464 (607)
Q Consensus 431 nav~~G~D~vmL---s~ETa~G~-yPveaV~~m~~I~~ 464 (607)
.....|.+.+ .+-|.... ++....+.++++..
T Consensus 149 --~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~ 184 (242)
T cd04724 149 --AELASGFIYYVSRTGVTGARTELPDDLKELIKRIRK 184 (242)
T ss_pred --HhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHh
Confidence 3324555543 33333222 45555555555543
No 104
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=83.32 E-value=33 Score=35.62 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=70.2
Q ss_pred CHHhH-HHHHhhHhcCCcEEEeccC-----------CChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh---
Q 007349 303 TDKDW-EDIKFGVDNQVDFYAVSFV-----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--- 367 (607)
Q Consensus 303 t~kD~-~dI~~al~~gvD~I~~SfV-----------~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~--- 367 (607)
+..|. +.++.+.+.|+|+|-+.+- ++++.+.++-+.+.+. -+.+|++|+-.-...+++.++++.
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-VDIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-cCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 33454 4445666779999877531 1334444433333332 257899998765444455555543
Q ss_pred --ccEEEEcCCCccc--C------------CCCC---CHHHHHHHHHHHHHHc--CCCEEEEcccchhhhcCCCCChHhh
Q 007349 368 --SDGAMVARGDLGA--E------------LPIE---DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEV 426 (607)
Q Consensus 368 --sDGImIgRGDLg~--e------------lg~e---~v~~~qk~II~~c~~a--GKPvivaTqmLeSM~~~~~PtrAEv 426 (607)
+|+|.+.-+-.+. . -++. ..+...+.+-+..+.. ++|++.. ...-+.
T Consensus 188 ~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~---------GGI~~~--- 255 (289)
T cd02810 188 AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGV---------GGIDSG--- 255 (289)
T ss_pred cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEE---------CCCCCH---
Confidence 6999875221110 0 0111 1122333343444444 6888873 333332
Q ss_pred hhHHHHHHhccceEEec
Q 007349 427 SDIAIAVREGADAVMLS 443 (607)
Q Consensus 427 ~Dv~nav~~G~D~vmLs 443 (607)
.|+..++..|+|++++.
T Consensus 256 ~da~~~l~~GAd~V~vg 272 (289)
T cd02810 256 EDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHcCccHheEc
Confidence 46778888999999987
No 105
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=83.15 E-value=40 Score=36.75 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=90.8
Q ss_pred CCCHHhHHHHHhh-HhcCCcEEEeccCC-ChhHHHHHHHHHHhcCCCceEEEee-cChhhHhcHHHHHhh-ccEEEEc--
Q 007349 301 SITDKDWEDIKFG-VDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-SDGAMVA-- 374 (607)
Q Consensus 301 ~lt~kD~~dI~~a-l~~gvD~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IIAKI-Et~~av~NldeIl~~-sDGImIg-- 374 (607)
.++..++..|... .+.|+|.|=+.|-. +..+...++... +.+.+..+.+-. -+. +.++..++. .|.|.+-
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~~~---~di~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIV-ALGLPARLMAWCRARD---ADIEAAARCGVDAVHISIP 94 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HcCCCcEEEEEcCCCH---HHHHHHHcCCcCEEEEEEc
Confidence 3677787666544 46799998765543 333444454443 333445555544 233 334444443 4554443
Q ss_pred CCCcccC--CC--CCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEEecccccCC
Q 007349 375 RGDLGAE--LP--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAHG 449 (607)
Q Consensus 375 RGDLg~e--lg--~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ETa~G 449 (607)
-.|+-.. ++ .++.....++.++.++++|..+-+.. .....-+...+.+++. +...|+|.+.|. +|.=.
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DT~G~ 167 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGG------EDASRADPDFLVELAEVAAEAGADRFRFA-DTVGI 167 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEee------cCCCCCCHHHHHHHHHHHHHcCcCEEEEc-ccCCC
Confidence 2232111 11 23444555678899999998876531 1233333444555544 345699999985 88888
Q ss_pred CCHHHHHHHHHHHHHHh
Q 007349 450 KFPLKAVKVMHTVALRT 466 (607)
Q Consensus 450 ~yPveaV~~m~~I~~~a 466 (607)
..|.+.-+.+..+....
T Consensus 168 ~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 168 LDPFSTYELVRALRQAV 184 (365)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999988887654
No 106
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=82.78 E-value=9 Score=44.20 Aligned_cols=177 Identities=13% Similarity=0.151 Sum_probs=110.2
Q ss_pred EecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEe--ccCCChhHHHHHHHHHHhcCCCceEEEeec--ChhhH
Q 007349 283 ELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAV--SFVKDAKVVHELKDYLKSCNADIHVIVKIE--SADSI 358 (607)
Q Consensus 283 ~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~--SfV~sa~dv~~vr~~l~~~~~~i~IIAKIE--t~~av 358 (607)
.++.+-+|.+---.-.-..=++...+.|....+.|++.|-+ +-.+.|+.+.++++.|...|.+++++|-|= -.-|+
T Consensus 24 ~iGG~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~ 103 (606)
T PRK00694 24 FVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAM 103 (606)
T ss_pred eECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHH
Confidence 35566666553222111111233445666667889999765 344555555666777777888999999882 22333
Q ss_pred hcHHHHHhhccEEEEcCCCcccCC---------------CCCCHHHHHHHHHHHHHHcCCCEEEEcc-------cchhhh
Q 007349 359 PNLHSIISASDGAMVARGDLGAEL---------------PIEDVPLLQEDIIRRCRSMQKPVIVATN-------MLESMI 416 (607)
Q Consensus 359 ~NldeIl~~sDGImIgRGDLg~el---------------g~e~v~~~qk~II~~c~~aGKPvivaTq-------mLeSM~ 416 (607)
..+ +.+|.|-|-||.++-.- .++++..--+.++++|+++|+|+=+-++ +|+.
T Consensus 104 ~a~----~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~-- 177 (606)
T PRK00694 104 HVA----DFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQR-- 177 (606)
T ss_pred HHH----HhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHH--
Confidence 222 23899999999997511 1234555667899999999999855443 2222
Q ss_pred cCCCCChHh-----hhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 007349 417 DHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 417 ~~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 470 (607)
+. +|..- +.-+--+-..|++=+.+|- .-..|...|+.-+.++.+.++..
T Consensus 178 yG--~tpegmVeSAle~~~i~e~~~f~diviS~---KsSnv~~mi~AyrlLa~~~d~eg 231 (606)
T PRK00694 178 YG--DTIEGMVYSALEYIEVCEKLDYRDVVFSM---KSSNPKVMVAAYRQLAKDLDARG 231 (606)
T ss_pred hC--CCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHHHHHHHHHHHhhccC
Confidence 11 22211 2334445667899999884 44568888888888888887543
No 107
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=82.78 E-value=28 Score=32.54 Aligned_cols=116 Identities=22% Similarity=0.238 Sum_probs=66.0
Q ss_pred HHhhHhcCCcEEEeccCCC------hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCC
Q 007349 310 IKFGVDNQVDFYAVSFVKD------AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAEL 382 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~s------a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~el 382 (607)
..++.+.|+|+|-+....- .+.+..+++.+ .+..++.++......+... ..+. +|.+.+..+.-+...
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCC
Confidence 4577888999998876542 22223333322 4678889887655433211 2222 799999876554332
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 383 PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 383 g~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.. ..+.....+....+..++|++.+. ..-+. .++..++..|+|++++.
T Consensus 152 ~~-~~~~~~~~~~~~~~~~~~pi~~~G---------Gi~~~---~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 152 RD-AVPIADLLLILAKRGSKVPVIAGG---------GINDP---EDAAEALALGADGVIVG 199 (200)
T ss_pred cc-CchhHHHHHHHHHhcCCCCEEEEC---------CCCCH---HHHHHHHHhCCCEEEec
Confidence 21 111111223333456789988843 33222 35567777899999975
No 108
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=82.68 E-value=30 Score=38.25 Aligned_cols=125 Identities=18% Similarity=0.244 Sum_probs=70.2
Q ss_pred HhHHHHHh-hHhcCCcEEEecc-----C----------CChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-
Q 007349 305 KDWEDIKF-GVDNQVDFYAVSF-----V----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA- 367 (607)
Q Consensus 305 kD~~dI~~-al~~gvD~I~~Sf-----V----------~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~- 367 (607)
.++.+... .-+.|+|+|-+.+ + ++++.+.++-+.+.+. .+++|++|| ++ .+.++.+|++.
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl-~p-~~~~~~~~a~~~ 189 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKL-TP-NITDIREPARAA 189 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEc-CC-CcccHHHHHHHH
Confidence 44544433 3356888876532 2 2333444433333332 358999999 33 45567777664
Q ss_pred ----ccEEEE-----cCC--C---------cc--cCC----CCCCHHHHHHHHHHHHHHc---CCCEEEEcccchhhhcC
Q 007349 368 ----SDGAMV-----ARG--D---------LG--AEL----PIEDVPLLQEDIIRRCRSM---QKPVIVATNMLESMIDH 418 (607)
Q Consensus 368 ----sDGImI-----gRG--D---------Lg--~el----g~e~v~~~qk~II~~c~~a---GKPvivaTqmLeSM~~~ 418 (607)
+|||.+ +|- | |. ... |....+...+.|-+..++. ..|+|-. .
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~---------G 260 (420)
T PRK08318 190 KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI---------G 260 (420)
T ss_pred HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee---------c
Confidence 799883 221 1 10 011 2223455566665555554 5787752 2
Q ss_pred CCCChHhhhhHHHHHHhccceEEecc
Q 007349 419 PTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 419 ~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
..-+ ..|++.+++.|+|+||+..
T Consensus 261 GI~s---~~da~e~i~aGA~~Vqi~t 283 (420)
T PRK08318 261 GIET---WRDAAEFILLGAGTVQVCT 283 (420)
T ss_pred CcCC---HHHHHHHHHhCCChheeee
Confidence 3222 3478899999999999973
No 109
>PRK15452 putative protease; Provisional
Probab=82.47 E-value=5.5 Score=44.72 Aligned_cols=91 Identities=10% Similarity=0.146 Sum_probs=56.6
Q ss_pred HhHHHHHhhHhcCCcEEEecc---C-------CChhHHHHHHHHHHhcCCCceEEEe-ecChhhHhcHHHHHh----h-c
Q 007349 305 KDWEDIKFGVDNQVDFYAVSF---V-------KDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIIS----A-S 368 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~Sf---V-------~sa~dv~~vr~~l~~~~~~i~IIAK-IEt~~av~NldeIl~----~-s 368 (607)
.+.+.++.|+++|+|.|-+.+ - =+.+++.+..++..+.|.++.+-.- |=..+-++.+.+.++ . +
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 567888999999999988832 1 1347788887888777766544321 222233444444443 3 7
Q ss_pred cEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc--CCCEEEEccc
Q 007349 369 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM--QKPVIVATNM 411 (607)
Q Consensus 369 DGImIgRGDLg~elg~e~v~~~qk~II~~c~~a--GKPvivaTqm 411 (607)
|||+++ |+| ++..+++. +.|+...|||
T Consensus 91 DgvIV~--d~G--------------~l~~~ke~~p~l~ih~stql 119 (443)
T PRK15452 91 DALIMS--DPG--------------LIMMVREHFPEMPIHLSVQA 119 (443)
T ss_pred CEEEEc--CHH--------------HHHHHHHhCCCCeEEEEecc
Confidence 999995 443 12333332 6788888876
No 110
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=82.42 E-value=23 Score=38.02 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=77.2
Q ss_pred hHHHH-HhhHhcCCcEEEeccC--CC-----hhHH-HHHHHHHHhc--CCCceEEEeecChhhHhcHHHHHhh-----cc
Q 007349 306 DWEDI-KFGVDNQVDFYAVSFV--KD-----AKVV-HELKDYLKSC--NADIHVIVKIESADSIPNLHSIISA-----SD 369 (607)
Q Consensus 306 D~~dI-~~al~~gvD~I~~SfV--~s-----a~dv-~~vr~~l~~~--~~~i~IIAKIEt~~av~NldeIl~~-----sD 369 (607)
+..++ +...+.|+|+|-+.+- .. ..+. ..+.+.++.. ..+++|++|+ ++ .+.++.++++. +|
T Consensus 115 e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~d 192 (334)
T PRK07565 115 GWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL-SP-YFSNLANMAKRLDAAGAD 192 (334)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe-CC-CchhHHHHHHHHHHcCCC
Confidence 44333 3445678999877331 11 1111 1133333322 2358999997 43 33445555543 78
Q ss_pred EEEEcCCCcccCCCC--------------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHh
Q 007349 370 GAMVARGDLGAELPI--------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 435 (607)
Q Consensus 370 GImIgRGDLg~elg~--------------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~ 435 (607)
||.+.-.=.+..+.+ .-.+...+.+-+..+..+.|+|- ....-+ ..|+..++..
T Consensus 193 gI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig---------~GGI~s---~~Da~e~l~a 260 (334)
T PRK07565 193 GLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAA---------TTGVHD---AEDVIKMLLA 260 (334)
T ss_pred eEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEE---------ECCCCC---HHHHHHHHHc
Confidence 887642111211111 12344444444444555788775 333333 3478899999
Q ss_pred ccceEEecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 007349 436 GADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 436 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 470 (607)
|+|+|++...--.. -| +++.+|+++.+..+
T Consensus 261 GA~~V~v~t~~~~~-g~----~~~~~i~~~L~~~l 290 (334)
T PRK07565 261 GADVVMIASALLRH-GP----DYIGTILRGLEDWM 290 (334)
T ss_pred CCCceeeehHHhhh-Cc----HHHHHHHHHHHHHH
Confidence 99999998433321 13 45666666666554
No 111
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=81.82 E-value=35 Score=34.11 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=66.9
Q ss_pred HHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeec---------------ChhhHhcHHHHHhh-ccE
Q 007349 307 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIE---------------SADSIPNLHSIISA-SDG 370 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIE---------------t~~av~NldeIl~~-sDG 370 (607)
.++++..++.|+|.|.+... ..++...+++..+..+.+..+++ |. ..+.++.+..+.+. +|+
T Consensus 85 ~e~~~~~~~~Gad~vvigs~-~l~dp~~~~~i~~~~g~~~i~~s-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~ 162 (234)
T cd04732 85 LEDIERLLDLGVSRVIIGTA-AVKNPELVKELLKEYGGERIVVG-LDAKDGKVATKGWLETSEVSLEELAKRFEELGVKA 162 (234)
T ss_pred HHHHHHHHHcCCCEEEECch-HHhChHHHHHHHHHcCCceEEEE-EEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCE
Confidence 56666777889999887532 22333345555555554222222 11 11122223333333 788
Q ss_pred EEEc-CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCC
Q 007349 371 AMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 449 (607)
Q Consensus 371 ImIg-RGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G 449 (607)
+.+- +.--+..-| .+ . +.+-+.++....|++. ....-+..+ +..+...|+|++|+..---.|
T Consensus 163 iii~~~~~~g~~~g-~~-~---~~i~~i~~~~~ipvi~---------~GGi~~~~d---i~~~~~~Ga~gv~vg~~~~~~ 225 (234)
T cd04732 163 IIYTDISRDGTLSG-PN-F---ELYKELAAATGIPVIA---------SGGVSSLDD---IKALKELGVAGVIVGKALYEG 225 (234)
T ss_pred EEEEeecCCCccCC-CC-H---HHHHHHHHhcCCCEEE---------ecCCCCHHH---HHHHHHCCCCEEEEeHHHHcC
Confidence 8774 211122222 12 1 2222334455899888 445555544 445555699999998666666
Q ss_pred CCHHH
Q 007349 450 KFPLK 454 (607)
Q Consensus 450 ~yPve 454 (607)
+++.+
T Consensus 226 ~~~~~ 230 (234)
T cd04732 226 KITLE 230 (234)
T ss_pred CCCHH
Confidence 65543
No 112
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=81.52 E-value=21 Score=39.53 Aligned_cols=133 Identities=16% Similarity=0.106 Sum_probs=80.8
Q ss_pred HHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcC-CCcccCCCCCCHH
Q 007349 310 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVAR-GDLGAELPIEDVP 388 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgR-GDLg~elg~e~v~ 388 (607)
++.+.+.|+|++.+......+.+.+..+.+++.|..+.+ -.+.....++.++++....|.+.+.+ -|=+ +.....
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV-D~lnp~tp~e~i~~l~~~vD~Vllht~vdp~---~~~~~~ 318 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL-DMLNVEDPVKLLESLKVKPDVVELHRGIDEE---GTEHAW 318 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE-EEcCCCCHHHHHHHhhCCCCEEEEccccCCC---cccchH
Confidence 456678999999988765555677777777777744433 04444445667787766689998886 2322 111111
Q ss_pred HHHHHHHHHHHH--cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHH
Q 007349 389 LLQEDIIRRCRS--MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVA 463 (607)
Q Consensus 389 ~~qk~II~~c~~--aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~ 463 (607)
+ -++..++ .+.++.++- .-. ..++..++..|+|.+++.+--..-+-|.++++.+.+.+
T Consensus 319 ---~-kI~~ikk~~~~~~I~VdG--------GI~-----~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 319 ---G-NIKEIKKAGGKILVAVAG--------GVR-----VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred ---H-HHHHHHHhCCCCcEEEEC--------CcC-----HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 1 2222333 245566531 111 22466788899999887654323357999998887665
No 113
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.37 E-value=29 Score=34.66 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=66.3
Q ss_pred hHHHHHhhHhcCCcEEEec--cCCChh--HHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCccc
Q 007349 306 DWEDIKFGVDNQVDFYAVS--FVKDAK--VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 380 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~S--fV~sa~--dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~ 380 (607)
+.+.++.+.+.|+|+|.+- ..+.++ .+.++.+.+.+.+ ++.+++.+.|.+-. ....+. +|.+.+...++..
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea---~~a~~~G~d~i~~~~~g~t~ 156 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEA---LNAAKLGFDIIGTTLSGYTE 156 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHH---HHHHHcCCCEEEccCccccc
Confidence 4457788889999987662 222232 5566666666666 67888876665432 222222 7888664322211
Q ss_pred C---CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 381 E---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 381 e---lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
. ..... ....+++. ...++|++.. ...-+. .|+..++..|+|++++.
T Consensus 157 ~~~~~~~~~-~~~l~~i~---~~~~ipvia~---------GGI~~~---~~~~~~l~~GadgV~vG 206 (219)
T cd04729 157 ETAKTEDPD-FELLKELR---KALGIPVIAE---------GRINSP---EQAAKALELGADAVVVG 206 (219)
T ss_pred cccCCCCCC-HHHHHHHH---HhcCCCEEEe---------CCCCCH---HHHHHHHHCCCCEEEEc
Confidence 1 11111 12223332 2337998873 333222 46778888999999986
No 114
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=81.33 E-value=70 Score=32.97 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=90.6
Q ss_pred CCCHHhHHHHHh-hHhcCCcEEEeccCCC-hhHHHHHHHHHHhcCCCceEEEee-cChhhHhcHHHHHhh-ccEEEEc--
Q 007349 301 SITDKDWEDIKF-GVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-SDGAMVA-- 374 (607)
Q Consensus 301 ~lt~kD~~dI~~-al~~gvD~I~~SfV~s-a~dv~~vr~~l~~~~~~i~IIAKI-Et~~av~NldeIl~~-sDGImIg-- 374 (607)
.++..++..|.. -.+.|+|.|=+.|... ..+...++.+. ..+.+..+.+-. -+.+++ +...+. .|.|-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~-~~~~~~~~~~~~r~~~~~v---~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIV-ALGLPARLIVWCRAVKEDI---EAALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHH-hcCCCCEEEEeccCCHHHH---HHHHhCCcCEEEEEEe
Confidence 467777766644 4467999986655433 33334454443 333445555543 233343 333433 5655553
Q ss_pred CCCc--ccCC--CCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHH-HHhccceEEecccccCC
Q 007349 375 RGDL--GAEL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHG 449 (607)
Q Consensus 375 RGDL--g~el--g~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ETa~G 449 (607)
-.|. -..+ ..++.....+..++.|++.|..+.+.. .....-+..++.+.+.. ...|+|.+.|. +|.=.
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~ 164 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTVGI 164 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCCCC
Confidence 1111 0011 113344555678999999999876532 12333445566666655 45699999995 88888
Q ss_pred CCHHHHHHHHHHHHHHh
Q 007349 450 KFPLKAVKVMHTVALRT 466 (607)
Q Consensus 450 ~yPveaV~~m~~I~~~a 466 (607)
-+|.+.-+.+..+....
T Consensus 165 ~~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 165 LDPFTTYELIRRLRAAT 181 (259)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999888887776543
No 115
>PRK07695 transcriptional regulator TenI; Provisional
Probab=80.99 E-value=38 Score=33.41 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=73.5
Q ss_pred HhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHH
Q 007349 311 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPL 389 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~ 389 (607)
..+...|+|++-++.- ...+..+++.+ ++..|-+.+.|.+ .+.+..+. +|.+++|+-.-+..-+-....
T Consensus 67 ~la~~~~~~gvHl~~~--~~~~~~~r~~~----~~~~ig~s~~s~e---~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~- 136 (201)
T PRK07695 67 DIALLLNIHRVQLGYR--SFSVRSVREKF----PYLHVGYSVHSLE---EAIQAEKNGADYVVYGHVFPTDCKKGVPAR- 136 (201)
T ss_pred HHHHHcCCCEEEeCcc--cCCHHHHHHhC----CCCEEEEeCCCHH---HHHHHHHcCCCEEEECCCCCCCCCCCCCCC-
Confidence 3566778888877752 22244455433 2445555554433 23333333 799998874333211100000
Q ss_pred HHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHH
Q 007349 390 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 464 (607)
Q Consensus 390 ~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 464 (607)
-.+.+-+.+...++|++.. ... +. .++..+...|+|++.+.+.--....|.++++.+.++..
T Consensus 137 g~~~l~~~~~~~~ipvia~---------GGI-~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 137 GLEELSDIARALSIPVIAI---------GGI-TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred CHHHHHHHHHhCCCCEEEE---------cCC-CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 0122222234457998873 333 33 34556678999999888776666789999998887653
No 116
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=80.92 E-value=82 Score=34.59 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=94.3
Q ss_pred CCCHHhHHHHHhhH-hcCCcEEEeccCC-ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEE--cC
Q 007349 301 SITDKDWEDIKFGV-DNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMV--AR 375 (607)
Q Consensus 301 ~lt~kD~~dI~~al-~~gvD~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImI--gR 375 (607)
.++.+++..|...+ +.|+|.|=+.|-. +.++...++.+. +.+.+..+++-.-. -.+.++..++. .|.|-+ .-
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 98 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLGLNASILALNRA--VKSDIDASIDCGVDAVHIFIAT 98 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcC
Confidence 35777876665544 6799998765543 334444455443 34555555555322 13345554444 565444 33
Q ss_pred CCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHH-HHhccceEEecccccCCC
Q 007349 376 GDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGETAHGK 450 (607)
Q Consensus 376 GDLg~e----lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ETa~G~ 450 (607)
.|+-.+ ...++.....++.++.+++.|..|.+.. .....-+...+.+++.+ ...|+|.+.|. +|.=.-
T Consensus 99 Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~ 171 (378)
T PRK11858 99 SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGIL 171 (378)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCC
Confidence 332111 1224555666788899999999887631 12333344555555544 45699999996 888888
Q ss_pred CHHHHHHHHHHHHHHh
Q 007349 451 FPLKAVKVMHTVALRT 466 (607)
Q Consensus 451 yPveaV~~m~~I~~~a 466 (607)
.|.+.-+++..+....
T Consensus 172 ~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 172 DPFTMYELVKELVEAV 187 (378)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999888887654
No 117
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=80.91 E-value=37 Score=33.29 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=66.3
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEE-eecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV-KIESADSIPNLHSIISA-SDGAMVARGDLGAELPIE 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIA-KIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e 385 (607)
+-++.+++.|++.|-+.. ++......++.+..... ++.|-+ -|=|. +++++.+.. +|+++.+-.|
T Consensus 20 ~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~~---~~~~~a~~~Ga~~i~~p~~~-------- 86 (190)
T cd00452 20 ALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLTP---EQADAAIAAGAQFIVSPGLD-------- 86 (190)
T ss_pred HHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCCH---HHHHHHHHcCCCEEEcCCCC--------
Confidence 445667788999999875 56666555665554433 344333 23223 455666655 8999754222
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 386 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 386 ~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
..++..|+..|.|++. -.. |. +++..+...|+|.+.+-
T Consensus 87 ------~~~~~~~~~~~~~~i~---------gv~--t~---~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 ------PEVVKAANRAGIPLLP---------GVA--TP---TEIMQALELGADIVKLF 124 (190)
T ss_pred ------HHHHHHHHHcCCcEEC---------CcC--CH---HHHHHHHHCCCCEEEEc
Confidence 3688889999998765 112 33 34568888999999984
No 118
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=80.67 E-value=66 Score=32.29 Aligned_cols=194 Identities=15% Similarity=0.158 Sum_probs=106.3
Q ss_pred CCHHhHHHHHh-hHhcCCcEEEec-cCCChhHHHHHHHHHHhcCCCceEEEeec-ChhhHhc-HHHHHhh-ccEEEEc--
Q 007349 302 ITDKDWEDIKF-GVDNQVDFYAVS-FVKDAKVVHELKDYLKSCNADIHVIVKIE-SADSIPN-LHSIISA-SDGAMVA-- 374 (607)
Q Consensus 302 lt~kD~~dI~~-al~~gvD~I~~S-fV~sa~dv~~vr~~l~~~~~~i~IIAKIE-t~~av~N-ldeIl~~-sDGImIg-- 374 (607)
++..++..|.. -.+.|+|.|=+. ..-+.++...++.+.+.... ..+.+.+- ..+.++. ++.+... .|.+.+.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 67777766644 446799998776 33567777777766544322 33333322 2222333 2222223 5666553
Q ss_pred CCCcccC--C--CCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHH-hccceEEecccccCC
Q 007349 375 RGDLGAE--L--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHG 449 (607)
Q Consensus 375 RGDLg~e--l--g~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G 449 (607)
-.|+-.. + ..++......++++.+++.|..+.+... .....+..++.+.+..+. .|+|.+.|. +|.=.
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~ 162 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYLA-DTVGI 162 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEee-CccCC
Confidence 2231111 1 1133455567889999999999966432 334455667777776665 499999995 88888
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCCh
Q 007349 450 KFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRTG 513 (607)
Q Consensus 450 ~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~sG 513 (607)
-.|.+.-+.++.+-...-. ....-+ .-++. .+|.+.+..|-+.++-+|=.|-.|
T Consensus 163 ~~P~~v~~lv~~~~~~~~~-~~l~~H-------~Hnd~--Gla~An~laA~~aGa~~id~t~~G 216 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPD-IPLGFH-------AHNDL--GLAVANALAALEAGADRIDGTLGG 216 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTT-SEEEEE-------EBBTT--S-HHHHHHHHHHTT-SEEEEBGGG
T ss_pred cCHHHHHHHHHHHHHhccC-CeEEEE-------ecCCc--cchhHHHHHHHHcCCCEEEccCcc
Confidence 8898887777777655543 111101 11222 345555667777788666555444
No 119
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=80.64 E-value=7.6 Score=39.01 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=75.4
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCC--
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE-- 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e-- 385 (607)
+.++.-.+.|+|+|.+ ++++.++..++-+++++.|.+..|..+-+| .++.++.++...|.|++ ++++-|..
T Consensus 71 ~~i~~~~~~g~~~i~~-H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~Vlv----MsV~PG~~Gq 143 (201)
T PF00834_consen 71 RYIEEFAEAGADYITF-HAEATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLV----MSVEPGFGGQ 143 (201)
T ss_dssp GHHHHHHHHT-SEEEE-EGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEE----ESS-TTTSSB
T ss_pred HHHHHHHhcCCCEEEE-cccchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEE----EEecCCCCcc
Confidence 3455567889998876 567888888888999999988888888887 57889999999999999 77877762
Q ss_pred ----CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCC-CCChHhhhhHHHHHHhccceEEec
Q 007349 386 ----DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-TPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 386 ----~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~-~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.+..-.+++-+...+.|..+.+. +... ... -+......|+|.+++.
T Consensus 144 ~f~~~~~~KI~~l~~~~~~~~~~~~I~-------vDGGI~~~-----~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 144 KFIPEVLEKIRELRKLIPENGLDFEIE-------VDGGINEE-----NIKQLVEAGADIFVAG 194 (201)
T ss_dssp --HGGHHHHHHHHHHHHHHHTCGSEEE-------EESSESTT-----THHHHHHHT--EEEES
T ss_pred cccHHHHHHHHHHHHHHHhcCCceEEE-------EECCCCHH-----HHHHHHHcCCCEEEEC
Confidence 23333334444445555554431 1211 222 2346677899988764
No 120
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=80.62 E-value=18 Score=39.29 Aligned_cols=245 Identities=18% Similarity=0.167 Sum_probs=138.2
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCH
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDV 387 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v 387 (607)
+.|..-.+.|+|.|-+. |.+.++...+++..+ +.+++++|-|- -+--..+.++.+-+|.+-|-||.+|-
T Consensus 38 ~QI~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIH-Fd~~lAl~a~~~g~dkiRINPGNig~------- 106 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIH-FDYRLAALAMAKGVAKVRINPGNIGF------- 106 (346)
T ss_pred HHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeC-CCcHHHHHHHHhccCeEEECCCCCCC-------
Confidence 44555567899998875 578888887777665 45799999882 22223355666679999999999876
Q ss_pred HHHHHHHHHHHHHcCCCEEEEc--ccchh--hhcCCCCChHh-----hhhHHHHHHhccceEEecccccCCCCHHHHHHH
Q 007349 388 PLLQEDIIRRCRSMQKPVIVAT--NMLES--MIDHPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAVKV 458 (607)
Q Consensus 388 ~~~qk~II~~c~~aGKPvivaT--qmLeS--M~~~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~ 458 (607)
..--+.++++|+++|+|+=+-. -=|+. |.....||..- ...+.-+-..|++=+.+|- ....+..+|+.
T Consensus 107 ~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~---KsSdv~~~i~a 183 (346)
T TIGR00612 107 RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSM---KASDVAETVAA 183 (346)
T ss_pred HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCCHHHHHHH
Confidence 3556789999999999973322 12221 11233355432 3334455567888888874 34456677777
Q ss_pred HHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEE-EcCChHHHHHHHhcCCCCeEEEEeCCHHH
Q 007349 459 MHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIV-FTRTGSMAVILSHYRPSSTIFAFTNQERI 537 (607)
Q Consensus 459 m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv-~T~sG~tA~~is~~RP~~PIIAvT~d~~t 537 (607)
-+.++...+.-+.. ..- +-.......+..+++.+.. |++-++-.|=| +|..---=-.++ .++
T Consensus 184 yr~la~~~dyPLHl-GVT-EAG~~~~G~IKSaigig~L-L~~GIGDTIRVSLT~dP~~EV~va--------------~~I 246 (346)
T TIGR00612 184 YRLLAERSDYPLHL-GVT-EAGMGVKGIVKSSAGIGIL-LARGIGDTIRVSLTDDPTHEVPVA--------------FEI 246 (346)
T ss_pred HHHHHhhCCCCcee-ccc-cCCCCCCchhHHHHHHHHH-HhhCCCCeEEEECCCCcHHHHHHH--------------HHH
Confidence 66666554421110 000 0001112234555555543 44444443333 554432222222 256
Q ss_pred HhhhccC-CCeEEEEeccC----CCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Q 007349 538 KQRLVLY-QGVMPIYMQFS----DDVEETFSRAIKLLMDKNLVTKGEFVTLVQS 586 (607)
Q Consensus 538 aRrL~L~-wGV~Pi~~~~~----~d~d~~i~~Al~~ake~Gll~~GD~VVvvsg 586 (607)
.+.|.|. +|+.=+-++.- -|.....++.-+.++. ++..=.|.|..+
T Consensus 247 L~slglr~~g~~iiSCPtCGR~~~dl~~~~~~ve~~l~~---~~~~l~VAVMGC 297 (346)
T TIGR00612 247 LQSLGLRARGVEIVACPSCGRTGFDVEKVVRRVQEALFH---LKTPLKVAVMGC 297 (346)
T ss_pred HHHcCCCcCCCeEEECCCCCCcCCCHHHHHHHHHHHHhc---CCCCCEEEEECc
Confidence 6777775 56665666533 3555555555554433 344445555443
No 121
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=80.58 E-value=44 Score=33.68 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+++- .|....-......-..|++.+...+. .-++.+...+++.+-...++.
T Consensus 64 alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~------~~~~~~~a~~~~~~~~~~~~~ 126 (244)
T cd00640 64 ALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD------FDDAIALAKELAEEDPGAYYV 126 (244)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhCCCCEec
Confidence 4566889999999773 22222334455677789988777533 346667766665542222211
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC---C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeC
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN---T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTN 533 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~---a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~ 533 (607)
.+ +. .....+.....+.++.++++ . .|++.+-+|.++.-++ ...|...|+++-+
T Consensus 127 ~~-~~------n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 127 NQ-FD------NPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred CC-CC------CHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 11 10 01122333344556777765 3 6888999998887555 4558899999877
No 122
>PRK04302 triosephosphate isomerase; Provisional
Probab=80.18 E-value=43 Score=33.76 Aligned_cols=136 Identities=15% Similarity=0.213 Sum_probs=77.4
Q ss_pred HHhhHhcCCcEEEeccCCChhHHHHHHHHHHhc-CCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCC-cccCCCCC-
Q 007349 310 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSC-NADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD-LGAELPIE- 385 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~-~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGD-Lg~elg~e- 385 (607)
++...+.|+|+|.++.-++.....++.+++..+ ...+.+|. +..+ .+.+..+.+. .|.|-+.+-+ .|...+..
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~--~v~~-~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~ 154 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVV--CVNN-PETSAAAAALGPDYVAVEPPELIGTGIPVSK 154 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEE--EcCC-HHHHHHHhcCCCCEEEEeCccccccCCCCCc
Confidence 455667899999999864444444444444322 12344554 3333 3445554443 4666665533 33333321
Q ss_pred CHHHHHHHHHHHHHHc--CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHH
Q 007349 386 DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMH 460 (607)
Q Consensus 386 ~v~~~qk~II~~c~~a--GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~ 460 (607)
..+....++++..++. +.|++. -...-+. .++..+...|+|+++..+....-..|.+.++-+.
T Consensus 155 ~~~~~i~~~~~~ir~~~~~~pvi~---------GggI~~~---e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~ 219 (223)
T PRK04302 155 AKPEVVEDAVEAVKKVNPDVKVLC---------GAGISTG---EDVKAALELGADGVLLASGVVKAKDPEAALRDLV 219 (223)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEE---------ECCCCCH---HHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHH
Confidence 3345555666667763 578775 2233232 3455677899999999877777777777666443
No 123
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=80.05 E-value=3.8 Score=44.70 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=42.9
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 99 r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
.+-.+-+.+||..++.|.+++|+++|+|++=|.-+||..+...++++.+|+
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~ 145 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKK 145 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHH
Confidence 356788889999999999999999999999999999999887777777765
No 124
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=79.53 E-value=33 Score=39.48 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=99.7
Q ss_pred CCCHHhHHHHHhh-HhcCCcEEEecc-CCChhHHHHHHHHHHhcCCCceEEEeec-ChhhH-----hcHHHHHhh-ccEE
Q 007349 301 SITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIE-SADSI-----PNLHSIISA-SDGA 371 (607)
Q Consensus 301 ~lt~kD~~dI~~a-l~~gvD~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IIAKIE-t~~av-----~NldeIl~~-sDGI 371 (607)
.++..++..|... .+.|+|.|=+.| .-++.|...++.+.+..-++..|.+..= ....+ ..++..+.. .+.|
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v 98 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVV 98 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEE
Confidence 3577887666554 467999996643 2478888888877643223455555542 22222 124444443 3444
Q ss_pred E--EcCCCcccC--CC--CCCHHHHHHHHHHHHHHcCCCEE-EEcccchhhhcCCCCChHhhhhHHHH-HHhccceEEec
Q 007349 372 M--VARGDLGAE--LP--IEDVPLLQEDIIRRCRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLS 443 (607)
Q Consensus 372 m--IgRGDLg~e--lg--~e~v~~~qk~II~~c~~aGKPvi-vaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs 443 (607)
. +.-.|+-.+ ++ .+++.......++.++.+|..|. .++.+.+... -+...+.+++.+ ...|+|.+.|.
T Consensus 99 ~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r----~~~~~l~~~~~~a~~aGad~i~i~ 174 (526)
T TIGR00977 99 TIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYK----ANPEYALATLATAQQAGADWLVLC 174 (526)
T ss_pred EEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeeccc----CCHHHHHHHHHHHHhCCCCeEEEe
Confidence 3 333343332 22 25666667788999999999884 4544433211 122335555555 45699999997
Q ss_pred ccccCCCCHHHHHHHHHHHHHHhh
Q 007349 444 GETAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 444 ~ETa~G~yPveaV~~m~~I~~~aE 467 (607)
+|.=+..|.+.-+.+..+.....
T Consensus 175 -DTvG~~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 175 -DTNGGTLPHEISEITTKVKRSLK 197 (526)
T ss_pred -cCCCCcCHHHHHHHHHHHHHhCC
Confidence 99999999999999999876644
No 125
>PRK06852 aldolase; Validated
Probab=79.22 E-value=37 Score=36.51 Aligned_cols=132 Identities=11% Similarity=0.041 Sum_probs=74.4
Q ss_pred hhhHhcHHHHHhh-----ccEEEEcCCCcccCCCCCCHHHHHHHHHHHH--HHcCCCEEEEcccchhhhcCC----CCCh
Q 007349 355 ADSIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRC--RSMQKPVIVATNMLESMIDHP----TPTR 423 (607)
Q Consensus 355 ~~av~NldeIl~~-----sDGImIgRGDLg~elg~e~v~~~qk~II~~c--~~aGKPvivaTqmLeSM~~~~----~Ptr 423 (607)
..+++|++.+++. +|+++.-+|= ++.+ ....+|.|+--. -|-...+ .|..
T Consensus 55 ~~gl~dp~~~i~~~~~~g~dav~~~~G~-----------------l~~~~~~~~~~~lIlkl~--~~t~l~~~~~~~p~~ 115 (304)
T PRK06852 55 AKDDADPEHLFRIASKAKIGVFATQLGL-----------------IARYGMDYPDVPYLVKLN--SKTNLVKTSQRDPLS 115 (304)
T ss_pred CcccCCHHHHHHHHHhcCCCEEEeCHHH-----------------HHhhccccCCCcEEEEEC--CCCCcCCcccCCccc
Confidence 3477777766654 6788775332 2222 223677776422 1111122 4655
Q ss_pred HhhhhHHHHHHhc------cceEEecccccCCCCHHHHHHHHHHHHHHhhcCC-CCC-CCCCCccccCCCChhHHHHHHH
Q 007349 424 AEVSDIAIAVREG------ADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL-PVS-ITPPTQFSAHKSHMGDMFAFHS 495 (607)
Q Consensus 424 AEv~Dv~nav~~G------~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~-~~~-~~~~~~~~~~~~~~~~~ia~~a 495 (607)
.-+.++-.|+..| +|+|..+-=-- +.+=-+.++-+.+|+.+++++- +.- ..|+.-.........+.++ .|
T Consensus 116 ~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia-~a 193 (304)
T PRK06852 116 RQLLDVEQVVEFKENSGLNILGVGYTIYLG-SEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIA-GA 193 (304)
T ss_pred cceecHHHHHhcCCccCCCceEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHH-HH
Confidence 4578889999998 88887652211 3344677888888888888762 210 0122111111122345554 45
Q ss_pred HHHHhhcCCCEE
Q 007349 496 TTMANTLNTPII 507 (607)
Q Consensus 496 ~~~A~~l~a~Ii 507 (607)
+++|-+++|-||
T Consensus 194 aRiaaELGADIV 205 (304)
T PRK06852 194 AGVAACLGADFV 205 (304)
T ss_pred HHHHHHHcCCEE
Confidence 699999999766
No 126
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=79.05 E-value=79 Score=33.37 Aligned_cols=132 Identities=18% Similarity=0.183 Sum_probs=69.3
Q ss_pred CCCCHHhHHHH--------HhhHhcCCcEEEeccC-------------CChhH------------HHH-HHHHHHhcCCC
Q 007349 300 PSITDKDWEDI--------KFGVDNQVDFYAVSFV-------------KDAKV------------VHE-LKDYLKSCNAD 345 (607)
Q Consensus 300 p~lt~kD~~dI--------~~al~~gvD~I~~SfV-------------~sa~d------------v~~-vr~~l~~~~~~ 345 (607)
..+|..|++.+ +.+.+.|+|+|=+-.. +...| +.+ ++..-+..+.+
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d 208 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPD 208 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 46888888766 3556789999866432 12111 111 22222234677
Q ss_pred ceEEEeecChh----------hHhcHHHHHhh-ccEEEEcCCCcccCCCC----CCHHHHHHHHHHH-HHHcCCCEEEEc
Q 007349 346 IHVIVKIESAD----------SIPNLHSIISA-SDGAMVARGDLGAELPI----EDVPLLQEDIIRR-CRSMQKPVIVAT 409 (607)
Q Consensus 346 i~IIAKIEt~~----------av~NldeIl~~-sDGImIgRGDLg~elg~----e~v~~~qk~II~~-c~~aGKPvivaT 409 (607)
..|..||--.+ +++-+..+.+. +|.|-+..|+..-.... ..-.......++. .+..++|++...
T Consensus 209 ~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G 288 (327)
T cd02803 209 FPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVG 288 (327)
T ss_pred ceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeC
Confidence 88999986322 22222333333 79998887764321110 0001112222222 233478988743
Q ss_pred ccchhhhcCCCCChHhhhhHHHHHHh-ccceEEec
Q 007349 410 NMLESMIDHPTPTRAEVSDIAIAVRE-GADAVMLS 443 (607)
Q Consensus 410 qmLeSM~~~~~PtrAEv~Dv~nav~~-G~D~vmLs 443 (607)
. .-+.. +...++.. |+|.|++.
T Consensus 289 g---------i~t~~---~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 289 G---------IRDPE---VAEEILAEGKADLVALG 311 (327)
T ss_pred C---------CCCHH---HHHHHHHCCCCCeeeec
Confidence 2 22332 35577777 79999985
No 127
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=78.93 E-value=46 Score=33.99 Aligned_cols=147 Identities=20% Similarity=0.162 Sum_probs=87.2
Q ss_pred CCCCHHhHHHH-HhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-----ccEEEE
Q 007349 300 PSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMV 373 (607)
Q Consensus 300 p~lt~kD~~dI-~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-----sDGImI 373 (607)
|..|+.|.+.+ +.|.++|+..|.++ +..+..+++++. +..+.+.+=|==|.|....+.-+.. .||.--
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~E 90 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADE 90 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCce
Confidence 78888888544 78899999988875 667778888884 4567777777666665555444332 122100
Q ss_pred cCCCcccCCCC---CCHHHHHHHHHHHHHH-cCCCE--EEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEEecccc
Q 007349 374 ARGDLGAELPI---EDVPLLQEDIIRRCRS-MQKPV--IVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGET 446 (607)
Q Consensus 374 gRGDLg~elg~---e~v~~~qk~II~~c~~-aGKPv--ivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ET 446 (607)
=|+-+.++. .++..+.++|.+.... .++++ |+ +.+.-+..|+.++.. ++..|+|.+--|.--
T Consensus 91 --iD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIl---------Et~~L~~e~i~~a~~~~~~agadfIKTsTG~ 159 (221)
T PRK00507 91 --IDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVII---------ETCLLTDEEKVKACEIAKEAGADFVKTSTGF 159 (221)
T ss_pred --EeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEe---------ecCcCCHHHHHHHHHHHHHhCCCEEEcCCCC
Confidence 122223332 2444555544443333 34443 44 567777788777766 677799976654222
Q ss_pred cCCCCHHHHHHHHHHHH
Q 007349 447 AHGKFPLKAVKVMHTVA 463 (607)
Q Consensus 447 a~G~yPveaV~~m~~I~ 463 (607)
+.|.--.+.|+.|.+.+
T Consensus 160 ~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 160 STGGATVEDVKLMRETV 176 (221)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 22223468888887665
No 128
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=78.85 E-value=74 Score=32.31 Aligned_cols=139 Identities=11% Similarity=0.151 Sum_probs=97.5
Q ss_pred HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCC--CC
Q 007349 309 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI--ED 386 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~--e~ 386 (607)
.+..-.+.|++.+.+ +++-.++..++.+++++.|-...+-.|=+|+ |+.++..++..|.++| .++|=|+ ++
T Consensus 79 ~V~~~a~agas~~tf-H~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~--Ve~~~~~~~~~D~vLv----MtVePGFGGQk 151 (224)
T KOG3111|consen 79 WVDQMAKAGASLFTF-HYEATQKPAELVEKIREKGMKVGLALKPGTP--VEDLEPLAEHVDMVLV----MTVEPGFGGQK 151 (224)
T ss_pred HHHHHHhcCcceEEE-EEeeccCHHHHHHHHHHcCCeeeEEeCCCCc--HHHHHHhhccccEEEE----EEecCCCchhh
Confidence 344445678997654 5577788889999999999888888888885 7778887777899998 6777666 22
Q ss_pred -HHHHHHHHHHHHHHcCCCEE-EEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHH
Q 007349 387 -VPLLQEDIIRRCRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 464 (607)
Q Consensus 387 -v~~~qk~II~~c~~aGKPvi-vaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 464 (607)
.+....++-..-.+...+.| +- -...|. -+..+...|+++++...-----.-|-++++.|++.++
T Consensus 152 Fme~mm~KV~~lR~kyp~l~ievD--------GGv~~~-----ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~ 218 (224)
T KOG3111|consen 152 FMEDMMPKVEWLREKYPNLDIEVD--------GGVGPS-----TIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVE 218 (224)
T ss_pred hHHHHHHHHHHHHHhCCCceEEec--------CCcCcc-----hHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHh
Confidence 33444455555557888887 31 122333 3456777788888765444445679999999999887
Q ss_pred Hhh
Q 007349 465 RTE 467 (607)
Q Consensus 465 ~aE 467 (607)
.+-
T Consensus 219 ~a~ 221 (224)
T KOG3111|consen 219 KAA 221 (224)
T ss_pred hhh
Confidence 653
No 129
>PRK08227 autoinducer 2 aldolase; Validated
Probab=78.52 E-value=30 Score=36.38 Aligned_cols=145 Identities=19% Similarity=0.168 Sum_probs=79.7
Q ss_pred HHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCC-ChHhhhhHHHHHHhccce
Q 007349 361 LHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP-TRAEVSDIAIAVREGADA 439 (607)
Q Consensus 361 ldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~P-trAEv~Dv~nav~~G~D~ 439 (607)
+..++..+|+++.-+|=+....+ ...++|.|+--. -|-...+.| ...-+.++-.|++.|+|+
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls--~~t~~~~~~~~~~l~~sVeeAvrlGAdA 110 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRAS--GGNSILKELSNEAVAVDMEDAVRLNACA 110 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEc--CCCCCCCCCCcccceecHHHHHHCCCCE
Confidence 34444447888886543322111 224577776422 111122333 344488899999999999
Q ss_pred EEecccccCC-CCHHHHHHHHHHHHHHhhcC-CCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCCh-HHH
Q 007349 440 VMLSGETAHG-KFPLKAVKVMHTVALRTESS-LPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRTG-SMA 516 (607)
Q Consensus 440 vmLs~ETa~G-~yPveaV~~m~~I~~~aE~~-~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~sG-~tA 516 (607)
|..+- -.| .+--+.++.+.+++.+++++ ++.-..++. ....+ +..+ +-..|+++|-+++|-||=..-+| ...
T Consensus 111 V~~~v--~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~pr-G~~~~-~~~~-~ia~aaRiaaELGADiVK~~y~~~~f~ 185 (264)
T PRK08227 111 VAAQV--FIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAV-GKDMV-RDAR-YFSLATRIAAEMGAQIIKTYYVEEGFE 185 (264)
T ss_pred EEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecC-CCCcC-chHH-HHHHHHHHHHHHcCCEEecCCCHHHHH
Confidence 98752 233 34456777788888888876 221111111 11111 2344 55567889999999777444456 444
Q ss_pred HHHHhcCCCCeEE
Q 007349 517 VILSHYRPSSTIF 529 (607)
Q Consensus 517 ~~is~~RP~~PII 529 (607)
+.+. --| +||+
T Consensus 186 ~vv~-a~~-vPVv 196 (264)
T PRK08227 186 RITA-GCP-VPIV 196 (264)
T ss_pred HHHH-cCC-CcEE
Confidence 4444 333 4555
No 130
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=78.30 E-value=91 Score=35.61 Aligned_cols=151 Identities=14% Similarity=0.186 Sum_probs=96.4
Q ss_pred CCHHhHHHHHhhH-hcCCcEEEecc-CCChhHHHHHHHHHHhcCCCceEEEeec-ChhhHhcHHHHHhh-----ccE--E
Q 007349 302 ITDKDWEDIKFGV-DNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIE-SADSIPNLHSIISA-----SDG--A 371 (607)
Q Consensus 302 lt~kD~~dI~~al-~~gvD~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IIAKIE-t~~av~NldeIl~~-----sDG--I 371 (607)
++..|+..|...+ +.|+|.|=+.| +.+..|...++.+... .....+.+..- +.+.+ |.-++. .+. +
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~-~~~~~i~al~r~~~~di---d~a~~al~~~~~~~v~i 95 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIART-VKNPRVCGLARCVEKDI---DAAAEALKPAEKFRIHT 95 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHh-CCCCEEEEEcCCCHHhH---HHHHHhccccCCCEEEE
Confidence 6778887776554 67999997755 5667888777666533 34455555543 23333 333332 233 3
Q ss_pred EEcCCCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh---hhhHHH-HHHhccceEEec
Q 007349 372 MVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---VSDIAI-AVREGADAVMLS 443 (607)
Q Consensus 372 mIgRGDLg~e----lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE---v~Dv~n-av~~G~D~vmLs 443 (607)
++.-.|+-.+ ...+++.....+.++.|++.|..+.+. ....+|++ +.+++. +...|+|.+.|.
T Consensus 96 ~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~---------~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~ 166 (494)
T TIGR00973 96 FIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS---------CEDAGRTEIPFLARIVEAAINAGATTINIP 166 (494)
T ss_pred EEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---------cCCCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 3333343322 122456666778999999999987763 33455554 445544 455699999995
Q ss_pred ccccCCCCHHHHHHHHHHHHHHh
Q 007349 444 GETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 444 ~ETa~G~yPveaV~~m~~I~~~a 466 (607)
+|.=+..|.+.-+.+..+....
T Consensus 167 -DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 167 -DTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred -CCCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999988888887654
No 131
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=78.06 E-value=4.3 Score=48.79 Aligned_cols=88 Identities=18% Similarity=0.175 Sum_probs=66.2
Q ss_pred EEEeccCCChhHHHHHHHHHHhcCC--------CceEEEeecChhhHhcHHHHHhh----------------ccEEEEcC
Q 007349 320 FYAVSFVKDAKVVHELKDYLKSCNA--------DIHVIVKIESADSIPNLHSIISA----------------SDGAMVAR 375 (607)
Q Consensus 320 ~I~~SfV~sa~dv~~vr~~l~~~~~--------~i~IIAKIEt~~av~NldeIl~~----------------sDGImIgR 375 (607)
-+.+|+.+++.|+.++--+.++.|- .+.|+...||.+.++|..+|++. .--||+|-
T Consensus 366 ~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMlGY 445 (794)
T PF00311_consen 366 RYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVMLGY 445 (794)
T ss_dssp EEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEEEC
T ss_pred HheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEecc
Confidence 4578999999999998777766553 47899999999999999999985 13799998
Q ss_pred CCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 007349 376 GDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 376 GDLg~elg~----e~v~~~qk~II~~c~~aGKPviv 407 (607)
.|=+=+-|+ -.+..+|+++.+.|+++|+.+.+
T Consensus 446 SDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~ 481 (794)
T PF00311_consen 446 SDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRF 481 (794)
T ss_dssp CCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEE
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 776666564 36889999999999999999865
No 132
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=77.58 E-value=60 Score=36.08 Aligned_cols=138 Identities=15% Similarity=0.142 Sum_probs=80.5
Q ss_pred HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCH
Q 007349 309 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDV 387 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v 387 (607)
+++.+.+.|+|+|.++.-.+...+.++.+++.+.|..+.+ -.+-....++.+.+..+. +|.|.+++|--+...+.. .
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~-g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~-~ 150 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMA-DLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKD-P 150 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEE-EecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCC-h
Confidence 6778889999998865322333455666666665543322 112222335556666665 899988876422222221 1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHH
Q 007349 388 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 464 (607)
Q Consensus 388 ~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 464 (607)
....+++. ...+.|+.+. ... +. ..+..++..|+|++.+.+.-..-.-|.++++.+.+..+
T Consensus 151 ~~~l~~l~---~~~~iPI~a~---------GGI-~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 151 LELLKEVS---EEVSIPIAVA---------GGL-DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred HHHHHHHH---hhCCCcEEEE---------CCC-CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 22223332 2346888763 222 22 23567888999999887665444568888887777653
No 133
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=77.48 E-value=75 Score=31.14 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=75.3
Q ss_pred HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecCh-hhHhcHHHHHh-hccEEEEcCCCcccCCCCCC
Q 007349 309 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESA-DSIPNLHSIIS-ASDGAMVARGDLGAELPIED 386 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~-~av~NldeIl~-~sDGImIgRGDLg~elg~e~ 386 (607)
++..+.+.|+|+|.+.+......+.++.+++.+.| +.+++-+-++ +-.+.+....+ -+|.+-+.+|-=+-..+...
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~ 145 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNP 145 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCC
Confidence 56677899999998877655445667777777654 4555543222 22344444455 38988887652222222222
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHH
Q 007349 387 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 462 (607)
Q Consensus 387 v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I 462 (607)
+. ++-+..+....+.+.+ .... +.. .+..++..|+|++.+.+.--.-+-|.++++.++++
T Consensus 146 ~~----~i~~l~~~~~~~~i~v--------~GGI-~~~---n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 146 FE----DLQTILKLVKEARVAV--------AGGI-NLD---TIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred HH----HHHHHHHhcCCCcEEE--------ECCc-CHH---HHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 21 1212222222233331 2222 322 34477788999998864433335688888887654
No 134
>PLN02591 tryptophan synthase
Probab=77.39 E-value=78 Score=32.99 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=72.9
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEE--EcCCCcccCCCC-
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM--VARGDLGAELPI- 384 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGIm--IgRGDLg~elg~- 384 (607)
+-++.+.+.|+|++.+|=. ..++..++++.+++.|- ..|..+=-...-+.+..|++.++|.+ |++ .|+. |.
T Consensus 97 ~F~~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~gl--~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvT-G~~ 170 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDL-PLEETEALRAEAAKNGI--ELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVT-GAR 170 (250)
T ss_pred HHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCc-CCC
Confidence 4456777889999988854 24566667777766553 34444411122457888998876654 233 2222 21
Q ss_pred CCHHHHHHHHHHHHHH-cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 385 EDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 385 e~v~~~qk~II~~c~~-aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
..++...+..++.+++ .++|+.+- ...-+.+ ++..+...|+|+++..+
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vG---------FGI~~~e---~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVG---------FGISKPE---HAKQIAGWGADGVIVGS 219 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEe---------CCCCCHH---HHHHHHhcCCCEEEECH
Confidence 3445556677777776 48998873 3333333 46677888999999763
No 135
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=77.08 E-value=39 Score=36.92 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=78.4
Q ss_pred HhHHHHHhhHhcCCcEEEeccC----------CChhHHHHHHHHHHhcCCCceEEEee-cChhh----HhcHHHHHhh-c
Q 007349 305 KDWEDIKFGVDNQVDFYAVSFV----------KDAKVVHELKDYLKSCNADIHVIVKI-ESADS----IPNLHSIISA-S 368 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~SfV----------~sa~dv~~vr~~l~~~~~~i~IIAKI-Et~~a----v~NldeIl~~-s 368 (607)
.+++++..+++.|+|.|-+.+- -+.+++.+..+++.+.|.++.+..-+ =.... .+-++...+. .
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~Gv 93 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELGV 93 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcCC
Confidence 4678899999999998877732 35577888888888888875544422 11112 3334444444 8
Q ss_pred cEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcC--CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccc
Q 007349 369 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 446 (607)
Q Consensus 369 DGImIgRGDLg~elg~e~v~~~qk~II~~c~~aG--KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 446 (607)
|+|+++ |+| ++..+++.+ .|+.+.||+.= .| +. .+--+-..|+.-++|+-|.
T Consensus 94 Daviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~v---~N--~~-----~~~f~~~~G~~rvVl~rEl 147 (347)
T COG0826 94 DAVIVA--DPG--------------LIMLARERGPDLPIHVSTQANV---TN--AE-----TAKFWKELGAKRVVLPREL 147 (347)
T ss_pred CEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEec---CC--HH-----HHHHHHHcCCEEEEeCccC
Confidence 999994 554 567788888 99999888432 11 11 2224445599999999887
Q ss_pred c
Q 007349 447 A 447 (607)
Q Consensus 447 a 447 (607)
+
T Consensus 148 s 148 (347)
T COG0826 148 S 148 (347)
T ss_pred C
Confidence 6
No 136
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=76.69 E-value=26 Score=34.59 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=64.6
Q ss_pred hHHHHHhhHhcCCcEEEeccCC-ChhHH-HH-HHHHHHhcCCCceEEEeecChhhHhcHHHHHhh--ccEEEEcCCCccc
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVK-DAKVV-HE-LKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGA 380 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~-sa~dv-~~-vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~--sDGImIgRGDLg~ 380 (607)
+.+|++.+++.|+|+|++-|.. |+..+ .+ ++++.+.....+.-++-+-+. -++.+.+++.. .|+|-++-.|
T Consensus 8 ~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg~e--- 83 (203)
T cd00405 8 TLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNE-DLEEILEIAEELGLDVVQLHGDE--- 83 (203)
T ss_pred CHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECCCC---
Confidence 4578889999999999988753 45555 32 344444344323333334343 25556666655 6999987433
Q ss_pred CCCCCCHHHHHHHHHHHHHH-cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccccc
Q 007349 381 ELPIEDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 447 (607)
Q Consensus 381 elg~e~v~~~qk~II~~c~~-aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa 447 (607)
+.+ .++..++ .|.+++-+- .-...+. .+...+...|+|.+++-..|.
T Consensus 84 --~~~--------~~~~l~~~~~~~~i~~i-------~~~~~~~---~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 84 --SPE--------YCAQLRARLGLPVIKAI-------RVKDEED---LEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred --CHH--------HHHHHHhhcCCcEEEEE-------ecCChhh---HHHhhhccccCCEEEEcCCCC
Confidence 111 1122222 377776321 1111111 122456668999999965544
No 137
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=76.58 E-value=60 Score=32.01 Aligned_cols=131 Identities=17% Similarity=0.142 Sum_probs=73.0
Q ss_pred HHHHhhHhcCCcEEEe-----ccCCC----hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCC
Q 007349 308 EDIKFGVDNQVDFYAV-----SFVKD----AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~-----SfV~s----a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGD 377 (607)
+.++.+.+.|+|+|.+ +|+.+ .+.+.+++++. .....+-.++-. ..+.++.+.+. +||+.+--
T Consensus 20 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh~-- 92 (220)
T PRK05581 20 EEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT---KLPLDVHLMVEN--PDRYVPDFAKAGADIITFHV-- 92 (220)
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC---CCcEEEEeeeCC--HHHHHHHHHHcCCCEEEEee--
Confidence 5667888999999999 88754 33344444332 212223344443 33456666655 79977631
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc--cccC-CCCHHH
Q 007349 378 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ETAH-GKFPLK 454 (607)
Q Consensus 378 Lg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~--ETa~-G~yPve 454 (607)
+.. ......++.+++.|..+++++ ++. |..| ....+..++|.+++.+ .|.. ..++..
T Consensus 93 -----~~~---~~~~~~~~~~~~~~~~~g~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~ 152 (220)
T PRK05581 93 -----EAS---EHIHRLLQLIKSAGIKAGLVL--------NPA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKFIPE 152 (220)
T ss_pred -----ccc---hhHHHHHHHHHHcCCEEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccccHH
Confidence 111 123456888899999888742 121 2222 2344556688766543 2223 344556
Q ss_pred HHHHHHHHHHH
Q 007349 455 AVKVMHTVALR 465 (607)
Q Consensus 455 aV~~m~~I~~~ 465 (607)
.++.++++...
T Consensus 153 ~~~~i~~~~~~ 163 (220)
T PRK05581 153 VLEKIRELRKL 163 (220)
T ss_pred HHHHHHHHHHH
Confidence 67776666543
No 138
>PRK09389 (R)-citramalate synthase; Provisional
Probab=76.45 E-value=1.5e+02 Score=33.94 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=95.9
Q ss_pred CCHHhHHHHHh-hHhcCCcEEEec-cCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEE--EcCC
Q 007349 302 ITDKDWEDIKF-GVDNQVDFYAVS-FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAM--VARG 376 (607)
Q Consensus 302 lt~kD~~dI~~-al~~gvD~I~~S-fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGIm--IgRG 376 (607)
++..++..|.. -.+.|+|.|=+. ++.+..|...++...+ .+.+..+.+..-.. .+.++..++. .|.|. ++-.
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~-~~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~S 97 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD-EGLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTS 97 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh-cCCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccC
Confidence 56677766644 457899998764 4567778777776554 34456666666542 3345555544 45543 3333
Q ss_pred CcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHH-HhccceEEecccccCCCC
Q 007349 377 DLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKF 451 (607)
Q Consensus 377 DLg~e----lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~ETa~G~y 451 (607)
|+-.+ ...+++...-...++.|++.|..+.+.- ......+..-+.+++.++ ..|+|.+.|. +|.=...
T Consensus 98 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~~ 170 (488)
T PRK09389 98 DLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG------EDASRADLDFLKELYKAGIEAGADRICFC-DTVGILT 170 (488)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE------eeCCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCcC
Confidence 43221 1223455555677888999998876632 223333344455555544 5699999995 8988999
Q ss_pred HHHHHHHHHHHHHH
Q 007349 452 PLKAVKVMHTVALR 465 (607)
Q Consensus 452 PveaV~~m~~I~~~ 465 (607)
|.+.-++++.+...
T Consensus 171 P~~~~~lv~~l~~~ 184 (488)
T PRK09389 171 PEKTYELFKRLSEL 184 (488)
T ss_pred HHHHHHHHHHHHhh
Confidence 99988887777543
No 139
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=76.35 E-value=44 Score=32.69 Aligned_cols=132 Identities=12% Similarity=0.049 Sum_probs=70.4
Q ss_pred HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHh----hccEEEEcCCCcccCCC-
Q 007349 309 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS----ASDGAMVARGDLGAELP- 383 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~----~sDGImIgRGDLg~elg- 383 (607)
++..+.+.|+|+|.++.- ......++.+. +....+-+.+- +.+++.+ -+|.|.+++-.=+..=+
T Consensus 73 ~~~~a~~~gad~vh~~~~--~~~~~~~~~~~---~~~~~~g~~~~------t~~e~~~a~~~gaD~v~~~~~~~~~~~~~ 141 (212)
T PRK00043 73 RVDLALAVGADGVHLGQD--DLPVADARALL---GPDAIIGLSTH------TLEEAAAALAAGADYVGVGPIFPTPTKKD 141 (212)
T ss_pred hHHHHHHcCCCEEecCcc--cCCHHHHHHHc---CCCCEEEEeCC------CHHHHHHHhHcCCCEEEECCccCCCCCCC
Confidence 356778889999877542 11223333322 22333333332 3333333 37999987543222110
Q ss_pred CC-CH-HHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHH
Q 007349 384 IE-DV-PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 461 (607)
Q Consensus 384 ~e-~v-~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~ 461 (607)
.. .. ....+++.+.. ...|++.. .+. +. .++..+...|+|++.+.+.--.-..|.++++.+.+
T Consensus 142 ~~~~~g~~~~~~~~~~~--~~~~v~a~---------GGI-~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~ 206 (212)
T PRK00043 142 AKAPQGLEGLREIRAAV--GDIPIVAI---------GGI-TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARALLA 206 (212)
T ss_pred CCCCCCHHHHHHHHHhc--CCCCEEEE---------CCc-CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHH
Confidence 00 11 22223332222 12888774 222 22 45668888999999986554334569999988877
Q ss_pred HHHHh
Q 007349 462 VALRT 466 (607)
Q Consensus 462 I~~~a 466 (607)
+..++
T Consensus 207 ~~~~~ 211 (212)
T PRK00043 207 AFRAA 211 (212)
T ss_pred HHhhc
Confidence 66543
No 140
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.27 E-value=7.2 Score=41.42 Aligned_cols=66 Identities=8% Similarity=0.214 Sum_probs=49.3
Q ss_pred HhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEe--ecChhhHhcHHHHHhh-ccEEEEcC
Q 007349 305 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAK--IEt~~av~NldeIl~~-sDGImIgR 375 (607)
.+.+++..+++.|+|+|.+-.. +++++.++...+++.+.++++.|- | -.+|+.+.++. +|+|.++.
T Consensus 204 ~tleea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~leAsGGI----t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVKIEASGNI----TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeEEEEECCC----CHHHHHHHHHcCCCEEEEch
Confidence 4567777889999999999864 778888877777655566655542 3 25678888877 99999984
No 141
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=75.99 E-value=27 Score=37.18 Aligned_cols=126 Identities=15% Similarity=0.231 Sum_probs=82.1
Q ss_pred HHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEc-ccc
Q 007349 335 LKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT-NML 412 (607)
Q Consensus 335 vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaT-qmL 412 (607)
++.+.++.+..++|...+.+. .++.+.+.++. .+.||+.--+ ++.++....-+++.+.|++.|.++=..- .+.
T Consensus 67 ~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~----l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~ 141 (293)
T PRK07315 67 IENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGSH----LPVEENLKLAKEVVEKAHAKGISVEAEVGTIG 141 (293)
T ss_pred HHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCC----CCHHHHHHHHHHHHHHHHHcCCEEEEecCccc
Confidence 334444444467899999987 66666666655 7899997544 4667888888999999999999983221 121
Q ss_pred --hhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHH----HHHHHHHHHHHHh
Q 007349 413 --ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL----KAVKVMHTVALRT 466 (607)
Q Consensus 413 --eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPv----eaV~~m~~I~~~a 466 (607)
|.++..... .....+...++..|+|.+-++--|..|.||- --.+.|.+|....
T Consensus 142 g~ed~~~g~s~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~ 200 (293)
T PRK07315 142 GEEDGIIGKGE-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAV 200 (293)
T ss_pred CcCccccCccC-CCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhc
Confidence 222221111 1223345577789999999998999999974 2345555555443
No 142
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=75.67 E-value=83 Score=30.68 Aligned_cols=136 Identities=18% Similarity=0.178 Sum_probs=77.9
Q ss_pred HHHHhhHhcCCcEEEec-----cCCC-hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCccc
Q 007349 308 EDIKFGVDNQVDFYAVS-----FVKD-AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 380 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~S-----fV~s-a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~ 380 (607)
++++.+.+.|+|.|.+- |+.+ ......++++-+..+..+.+..|+...+ +-++.+.+. +||+.+--
T Consensus 15 ~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~----- 87 (210)
T TIGR01163 15 EEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPD--RYIEDFAEAGADIITVHP----- 87 (210)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHH--HHHHHHHHcCCCEEEEcc-----
Confidence 66677788899999883 6543 3333344444332222333446666543 346666655 79988831
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc--cccC-CCCHHHHHH
Q 007349 381 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ETAH-GKFPLKAVK 457 (607)
Q Consensus 381 elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~--ETa~-G~yPveaV~ 457 (607)
+.. ....+.++.+++.|...++.. ++. |..| ....+..++|.+++.+ .+.. .+++...++
T Consensus 88 --~~~---~~~~~~~~~~~~~g~~~~~~~--------~~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~ 150 (210)
T TIGR01163 88 --EAS---EHIHRLLQLIKDLGAKAGIVL--------NPA-TPLE---FLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLE 150 (210)
T ss_pred --CCc---hhHHHHHHHHHHcCCcEEEEE--------CCC-CCHH---HHHHHHhhCCEEEEEEEcCCCCcccccHHHHH
Confidence 111 122566688899998877631 111 2222 3355567889887632 1223 356777878
Q ss_pred HHHHHHHHhh
Q 007349 458 VMHTVALRTE 467 (607)
Q Consensus 458 ~m~~I~~~aE 467 (607)
.++.+.....
T Consensus 151 ~i~~i~~~~~ 160 (210)
T TIGR01163 151 KIREVRKMID 160 (210)
T ss_pred HHHHHHHHHH
Confidence 7777765554
No 143
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=75.55 E-value=5.5 Score=42.79 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=41.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHH
Q 007349 101 TKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (607)
Q Consensus 101 TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~ 150 (607)
.-+.+.+|+..+..+.++.++++|++++=+|++||..+.+.++++.+|+.
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 83 LLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred ceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 34556677755678999999999999999999999998888888888763
No 144
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=75.03 E-value=15 Score=43.31 Aligned_cols=177 Identities=13% Similarity=0.198 Sum_probs=104.7
Q ss_pred EecCCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEec--cCCChhHHHHHHHHHHhcCCCceEEEee--cChhhH
Q 007349 283 ELKSRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKI--ESADSI 358 (607)
Q Consensus 283 ~l~s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IIAKI--Et~~av 358 (607)
.|+++-+|.+---.-.-..=++...+.|....+.|+|.|-+. -.+.|+.+..+++.|.+.+.+++++|-| .-.-|+
T Consensus 89 ~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 168 (733)
T PLN02925 89 ALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVAL 168 (733)
T ss_pred eECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHH
Confidence 355666665532221111112333455666678899997653 3344555556667777788899999988 333343
Q ss_pred hcHHHHHhhccEEEEcCCCcccCCC-C-----------CCHHH---HHHHHHHHHHHcCCCEEEEcc-------cchhhh
Q 007349 359 PNLHSIISASDGAMVARGDLGAELP-I-----------EDVPL---LQEDIIRRCRSMQKPVIVATN-------MLESMI 416 (607)
Q Consensus 359 ~NldeIl~~sDGImIgRGDLg~elg-~-----------e~v~~---~qk~II~~c~~aGKPvivaTq-------mLeSM~ 416 (607)
+ -++.+|.|-|-||.++-.-. + +++.. --..++++|+++|+|+=+-|+ +|+.
T Consensus 169 ~----a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~-- 242 (733)
T PLN02925 169 R----VAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSY-- 242 (733)
T ss_pred H----HHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHH--
Confidence 2 23338999999999986621 1 12333 334699999999999855443 2221
Q ss_pred cCCCCC-hHh--hhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhc
Q 007349 417 DHPTPT-RAE--VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTES 468 (607)
Q Consensus 417 ~~~~Pt-rAE--v~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~ 468 (607)
+..+|. ..| +.-+--+-..|++=+++|- .-..|...|...+.++.+.++
T Consensus 243 yGdtp~gmVeSAle~~~i~e~~~f~diviS~---KsSn~~~~V~AyR~La~~L~~ 294 (733)
T PLN02925 243 YGDSPRGMVESAFEFARICRKLDYHNFVFSM---KASNPVVMVQAYRLLVAEMYV 294 (733)
T ss_pred hCCChHHHHHHHHHHHHHHHHCCCCcEEEEE---EcCChHHHHHHHHHHHHHHHh
Confidence 111221 011 2334455667888888874 445677777777777777554
No 145
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=74.84 E-value=20 Score=37.86 Aligned_cols=116 Identities=16% Similarity=0.281 Sum_probs=76.0
Q ss_pred hhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHH
Q 007349 312 FGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQ 391 (607)
Q Consensus 312 ~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~q 391 (607)
.++..|+|..-+ |.+..+ ..-++.|. ++..+-.-.-...+++-++..+.-.++++|||| ||-+ +.+....
T Consensus 52 sa~~~GaDL~Hi-FCe~~A-a~vIKsYs----PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGRd---p~~~k~i 121 (306)
T KOG3974|consen 52 SALRVGADLSHI-FCEPEA-AVVIKSYS----PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGRD---PAILKEI 121 (306)
T ss_pred HHHHhccceeee-eechhH-HHHHhhcC----CceeecccccCCchHhHHHHHHhheeEEEECCC-CCCC---HHHHHHH
Confidence 345678886544 543322 22345554 555555555556688888888999999999997 4432 4466667
Q ss_pred HHHHHHHHHcCCCEEE-------EcccchhhhcC-----CCCChHhhhhHHHHHHhcc
Q 007349 392 EDIIRRCRSMQKPVIV-------ATNMLESMIDH-----PTPTRAEVSDIAIAVREGA 437 (607)
Q Consensus 392 k~II~~c~~aGKPviv-------aTqmLeSM~~~-----~~PtrAEv~Dv~nav~~G~ 437 (607)
+.|++-++..++|+.+ .+|-.|-|+.. .+|.--|...++.++.+-.
T Consensus 122 ~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNvvEFkRLcd~~l~~~ 179 (306)
T KOG3974|consen 122 AKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNVVEFKRLCDAELDKV 179 (306)
T ss_pred HHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcHHHHHHHHHHhhccc
Confidence 7899999999999753 45655644432 2677777777777765433
No 146
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=74.66 E-value=1.1e+02 Score=34.01 Aligned_cols=201 Identities=19% Similarity=0.151 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCCcEEecCCCEEEEEecCCCCCcce-Eec-cccccccccCCCCEE
Q 007349 141 QKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQPIILKEGQEFNFTIKRGVSTEDT-VSV-NYDDFVNDVEVGDIL 218 (607)
Q Consensus 141 ~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~i~l~~G~~v~l~~~~~~~~~~~-i~v-~~~~~~~~v~~Gd~I 218 (607)
.++...|+.+-+..- .++-|-..+.+-+.+ ..-.+.|+..+....-.+ +|= ++..+...++.|++|
T Consensus 9 sel~~~ik~~le~~~-~~v~v~gEis~~~~~-----------~sGH~Yf~Lkd~~a~i~~~~~~~~~~~~~~~~~~G~~v 76 (438)
T PRK00286 9 SELNRYVKSLLERDL-GQVWVRGEISNFTRH-----------SSGHWYFTLKDEIAQIRCVMFKGSARRLKFKPEEGMKV 76 (438)
T ss_pred HHHHHHHHHHHHhhC-CcEEEEEEeCCCeeC-----------CCCeEEEEEEcCCcEEEEEEEcChhhcCCCCCCCCCEE
Confidence 344455555544321 466666666665543 122344544322211111 221 233444567999999
Q ss_pred EEeCCccceeeeccccccccccccccccCCCcccccccccCceEEEEEEEEeCCeEEEEEEeCcEec----------CCC
Q 007349 219 LVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLLSIQGGMMSLAVKSKTKDLVKCIVVDGGELK----------SRR 288 (607)
Q Consensus 219 ~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~----------s~K 288 (607)
++- | .+++ | ...|.++|.|.++++..+ |.|- ..+
T Consensus 77 ~v~-g--~~~~------y--------------------~~~g~~ql~v~~i~~~g~-------G~l~~~~~~lk~~L~~e 120 (438)
T PRK00286 77 LVR-G--KVSL------Y--------------------EPRGDYQLIVEEIEPAGI-------GALAAAFEQLKEKLAAE 120 (438)
T ss_pred EEE-E--EEEE------E--------------------CCCCCEEEEEEEeeeCCc-------cHHHHHHHHHHHHHHHC
Confidence 988 1 1111 0 116888888888775542 2221 234
Q ss_pred ccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-
Q 007349 289 HLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA- 367 (607)
Q Consensus 289 gvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~- 367 (607)
|+.=|+...++|.+. .-|++=--.+++-++.+...+........+..-==+.+|-....+|++.
T Consensus 121 Glfd~~~k~~lP~~p---------------~~I~viTs~~gAa~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al 185 (438)
T PRK00286 121 GLFDPERKKPLPFFP---------------KRIGVITSPTGAAIRDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAI 185 (438)
T ss_pred CCCChhhcCCCCCCC---------------CEEEEEeCCccHHHHHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHH
Confidence 554455555555542 1233322345665666655555544432222211223344444444443
Q ss_pred -------ccEEEEcCCCcccCCCCCCHHHH-HHHHHHHHHHcCCCEEEE
Q 007349 368 -------SDGAMVARGDLGAELPIEDVPLL-QEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 368 -------sDGImIgRGDLg~elg~e~v~~~-qk~II~~c~~aGKPviva 408 (607)
.|.|+|+||-=+.| ++... ...++++..+...|||.|
T Consensus 186 ~~~~~~~~Dviii~RGGGS~e----DL~~Fn~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 186 ERANARGEDVLIVARGGGSLE----DLWAFNDEAVARAIAASRIPVISA 230 (438)
T ss_pred HHhcCCCCCEEEEecCCCCHH----HhhccCcHHHHHHHHcCCCCEEEe
Confidence 39999999932222 32222 346777888889999976
No 147
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.64 E-value=1e+02 Score=31.38 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=68.8
Q ss_pred HHHHhhHhcCCcEEEeccCC----------ChhHHHHHHHHHHhcCCCceEEEe-------e---c---ChhhHhcHHHH
Q 007349 308 EDIKFGVDNQVDFYAVSFVK----------DAKVVHELKDYLKSCNADIHVIVK-------I---E---SADSIPNLHSI 364 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~----------sa~dv~~vr~~l~~~~~~i~IIAK-------I---E---t~~av~NldeI 364 (607)
+.++++.++|.|+|=+++.. +.+++.++++.+++.|-.+.-+.- + + ..++++.+...
T Consensus 20 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~ 99 (284)
T PRK13210 20 ERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKA 99 (284)
T ss_pred HHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHH
Confidence 56778889999999886532 356788899999888765443310 1 1 12356666666
Q ss_pred Hhh-----ccEEEEcCCCcccCCC----CCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHH
Q 007349 365 ISA-----SDGAMVARGDLGAELP----IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAV 433 (607)
Q Consensus 365 l~~-----sDGImIgRGDLg~elg----~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav 433 (607)
++. ++.|.+..++...+-. ++.+....+++...+.+.|..+.+ |.|-..-.++.++..++...+
T Consensus 100 i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l-----E~~~~~~~~~~~~~~~l~~~v 172 (284)
T PRK13210 100 IRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV-----EIMDTPFMNSISKWKKWDKEI 172 (284)
T ss_pred HHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE-----EecCccccCCHHHHHHHHHHc
Confidence 654 4667665333211111 123334445677777777776554 333333345555555555555
No 148
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=74.64 E-value=86 Score=32.63 Aligned_cols=130 Identities=18% Similarity=0.208 Sum_probs=76.0
Q ss_pred HHHhhHhcCCcEEEeccC-CChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCC
Q 007349 309 DIKFGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIED 386 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV-~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~ 386 (607)
.+..+..+|+|+|.+--- .+.+++.++-++..+.| ..+++-+-|.+-+ +...+. +|.|.+..-||... .. +
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~E~---~~A~~~gadiIgin~rdl~~~-~~-d 197 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEEEL---ERALKLGAPLIGINNRNLKTF-EV-D 197 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHH---HHHHHcCCCEEEECCCCcccc-cC-C
Confidence 577888999999887432 24556666666666554 3444444454433 223333 78888887677533 21 1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHH
Q 007349 387 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 459 (607)
Q Consensus 387 v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m 459 (607)
...-.+++.... ...|++. ....-+.. |+..+...|+|+++..+.-..-..|.++++-+
T Consensus 198 -~~~~~~l~~~~p-~~~~vIa---------egGI~t~e---d~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 198 -LETTERLAPLIP-SDRLVVS---------ESGIFTPE---DLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred -HHHHHHHHHhCC-CCCEEEE---------EeCCCCHH---HHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 222233333221 1235544 34443433 46677778999999876666667888887754
No 149
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=74.13 E-value=82 Score=29.91 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=55.3
Q ss_pred ChHhhhhHHHHHHhccceEEecccccCCCC----HHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHH
Q 007349 422 TRAEVSDIAIAVREGADAVMLSGETAHGKF----PLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTT 497 (607)
Q Consensus 422 trAEv~Dv~nav~~G~D~vmLs~ETa~G~y----PveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~ 497 (607)
++.-+..+..+...|+|++++..- .+.. +.+.++....|+.+++..++.- .+.... .....+.+ ...++
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~-iy~~p~---~~~~~~~~-~~~~~ 136 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVIN--IGSLKEGDWEEVLEEIAAVVEAADGGLPLK-VILETR---GLKTADEI-AKAAR 136 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc--HHHHhCCCHHHHHHHHHHHHHHhcCCceEE-EEEECC---CCCCHHHH-HHHHH
Confidence 455577788899999999998532 1111 4566788888888762222210 010000 00012333 23355
Q ss_pred HHhhcCCCEEEEcCC-------hHHHHHHHh-cCCCCeEEEEeCCH
Q 007349 498 MANTLNTPIIVFTRT-------GSMAVILSH-YRPSSTIFAFTNQE 535 (607)
Q Consensus 498 ~A~~l~a~Iiv~T~s-------G~tA~~is~-~RP~~PIIAvT~d~ 535 (607)
++...++..|-.+.. -...+.+.+ +.+..||++.....
T Consensus 137 ~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 137 IAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred HHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 566677754443322 223333333 33367887777544
No 150
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=72.92 E-value=20 Score=37.19 Aligned_cols=98 Identities=19% Similarity=0.269 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 007349 329 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 329 a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviv 407 (607)
.+++.++.+|.++.| +..++ |+-..+.+|.+.+. .+.+=||-+||. .+ .+++.+.+.|||+|+
T Consensus 55 ~e~~~~L~~~~~~~g--i~f~s---tpfd~~s~d~l~~~~~~~~KIaS~dl~------n~-----~lL~~~A~tgkPvIl 118 (241)
T PF03102_consen 55 EEQHKELFEYCKELG--IDFFS---TPFDEESVDFLEELGVPAYKIASGDLT------NL-----PLLEYIAKTGKPVIL 118 (241)
T ss_dssp HHHHHHHHHHHHHTT---EEEE---EE-SHHHHHHHHHHT-SEEEE-GGGTT-------H-----HHHHHHHTT-S-EEE
T ss_pred HHHHHHHHHHHHHcC--CEEEE---CCCCHHHHHHHHHcCCCEEEecccccc------CH-----HHHHHHHHhCCcEEE
Confidence 455566666666543 44444 33344444444444 789999999885 22 366778889999999
Q ss_pred EcccchhhhcCCCCChHhhhhHHHHH-HhccceEEecccccCCCCHH
Q 007349 408 ATNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKFPL 453 (607)
Q Consensus 408 aTqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~ETa~G~yPv 453 (607)
.| +.-|.+|+.+..+.+ ..|.+-+.|-.= +..||.
T Consensus 119 ST---------G~stl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 119 ST---------GMSTLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp E----------TT--HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred EC---------CCCCHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 65 567789999999998 555554444322 446774
No 151
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=72.58 E-value=47 Score=33.69 Aligned_cols=145 Identities=16% Similarity=0.170 Sum_probs=85.4
Q ss_pred CCCCHHhHHHH-HhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh--------ccE
Q 007349 300 PSITDKDWEDI-KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--------SDG 370 (607)
Q Consensus 300 p~lt~kD~~dI-~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~--------sDG 370 (607)
|..|++|.+.+ +.|.++|+..|.++ +..+..+++.|. +..+.+.+=|==|.|-...+.-+.. +|.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdE 86 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVN----PSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADE 86 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 77888888554 78899999988774 667778888885 4567777777666666554443332 333
Q ss_pred EEEcCCCcccCCCC---CC---HHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhH-HHHHHhccceEEec
Q 007349 371 AMVARGDLGAELPI---ED---VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDI-AIAVREGADAVMLS 443 (607)
Q Consensus 371 ImIgRGDLg~elg~---e~---v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv-~nav~~G~D~vmLs 443 (607)
|= +-+.+|. .+ +..-.++|.+.|. |+|+-+ +||. +.-+..|+... --++..|+|.+=-|
T Consensus 87 iD-----vv~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE~----~~L~~~ei~~a~~ia~eaGADfvKTs 152 (211)
T TIGR00126 87 VD-----MVINIGALKDGNEEVVYDDIRAVVEACA--GVLLKV---IIET----GLLTDEEIRKACEICIDAGADFVKTS 152 (211)
T ss_pred EE-----eecchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 32 2223332 23 3333344555553 788755 3332 22344554443 34677899998665
Q ss_pred ccccCCCCHHHHHHHHHHHHH
Q 007349 444 GETAHGKFPLKAVKVMHTVAL 464 (607)
Q Consensus 444 ~ETa~G~yPveaV~~m~~I~~ 464 (607)
.-=+.+.--++.|+.|++++.
T Consensus 153 TGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 153 TGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred CCCCCCCCCHHHHHHHHHHhc
Confidence 221112224578888888765
No 152
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=72.39 E-value=79 Score=32.86 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=71.9
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhcc-EEEE-cCCCcccCCCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASD-GAMV-ARGDLGAELPIE 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sD-GImI-gRGDLg~elg~e 385 (607)
+-++.+.+.|+|++.++.. ..++..++.+.+++.|-+...+..=.| ..+.+..|++.+| .|++ ++...+ |..
T Consensus 106 ~f~~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~T---G~~ 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVT---GAR 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCC---CCc
Confidence 4567778899999999865 446777788888877766443443333 3678999999988 4444 331111 111
Q ss_pred -CHHHHHHHHHHHHHH-cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 386 -DVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 386 -~v~~~qk~II~~c~~-aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
....-....++..++ .++|+++ -...-+.. ++..+...|+|+++..
T Consensus 180 ~~~~~~~~~~i~~lr~~~~~pi~v---------gfGI~~~e---~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 180 NRAASALNELVKRLKAYSAKPVLV---------GFGISKPE---QVKQAIDAGADGVIVG 227 (256)
T ss_pred ccCChhHHHHHHHHHhhcCCCEEE---------eCCCCCHH---HHHHHHHcCCCEEEEC
Confidence 122223344444444 3678776 33333333 4557888899998875
No 153
>TIGR03586 PseI pseudaminic acid synthase.
Probab=72.35 E-value=58 Score=35.27 Aligned_cols=93 Identities=22% Similarity=0.269 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 330 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 330 ~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
++..++.+|.++.| +..++ |+-..+.+|.+.+. +|.+=||-+|+. . . .+++++.+.||||++.
T Consensus 77 e~~~~L~~~~~~~G--i~~~s---tpfd~~svd~l~~~~v~~~KI~S~~~~-n-----~-----~LL~~va~~gkPvils 140 (327)
T TIGR03586 77 EWHKELFERAKELG--LTIFS---SPFDETAVDFLESLDVPAYKIASFEIT-D-----L-----PLIRYVAKTGKPIIMS 140 (327)
T ss_pred HHHHHHHHHHHHhC--CcEEE---ccCCHHHHHHHHHcCCCEEEECCcccc-C-----H-----HHHHHHHhcCCcEEEE
Confidence 33444555554433 33333 33333344555555 788999988883 2 2 2456677889999996
Q ss_pred cccchhhhcCCCCChHhhhhHHHHHH-hcc-ceEEeccccc
Q 007349 409 TNMLESMIDHPTPTRAEVSDIAIAVR-EGA-DAVMLSGETA 447 (607)
Q Consensus 409 TqmLeSM~~~~~PtrAEv~Dv~nav~-~G~-D~vmLs~ETa 447 (607)
|- ..|.+|+...+.++. .|. +.++|=..+.
T Consensus 141 tG---------~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~ 172 (327)
T TIGR03586 141 TG---------IATLEEIQEAVEACREAGCKDLVLLKCTSS 172 (327)
T ss_pred CC---------CCCHHHHHHHHHHHHHCCCCcEEEEecCCC
Confidence 55 347789999888886 466 4555544333
No 154
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=72.33 E-value=49 Score=34.09 Aligned_cols=146 Identities=13% Similarity=0.133 Sum_probs=80.8
Q ss_pred CCCCHHhH-HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecC--hhh--------HhcHHHHHhh-
Q 007349 300 PSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIES--ADS--------IPNLHSIISA- 367 (607)
Q Consensus 300 p~lt~kD~-~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt--~~a--------v~NldeIl~~- 367 (607)
|.-+..|. +-+..+.++|+|.|.++- --+....+ ..+.++.++..+++ +.+ +..+++.++.
T Consensus 31 p~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~G 103 (258)
T TIGR01949 31 PIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHR---GYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMG 103 (258)
T ss_pred CCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhccc---ccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCC
Confidence 45566676 455788899999998862 12222222 23446778888843 221 2335666665
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhh-hcCCCCChHhhhh-HHHHHHhccceEEeccc
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESM-IDHPTPTRAEVSD-IAIAVREGADAVMLSGE 445 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM-~~~~~PtrAEv~D-v~nav~~G~D~vmLs~E 445 (607)
+|+|-+--- .+- .+..+.....+++.+.|++.|.|+++- ++-. ++.+..+..++.. ...+...|+|.+-.+
T Consensus 104 a~~v~~~~~-~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~---~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~-- 176 (258)
T TIGR01949 104 ADAVSIHVN-VGS-DTEWEQIRDLGMIAEICDDWGVPLLAM---MYPRGPHIDDRDPELVAHAARLGAELGADIVKTP-- 176 (258)
T ss_pred CCEEEEEEe-cCC-chHHHHHHHHHHHHHHHHHcCCCEEEE---EeccCcccccccHHHHHHHHHHHHHHCCCEEecc--
Confidence 676655311 111 121234466778999999999999871 1100 0011112233444 345667899999875
Q ss_pred ccCCCCHHHHHHHHHHHHHH
Q 007349 446 TAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 446 Ta~G~yPveaV~~m~~I~~~ 465 (607)
|+ --++.|++++..
T Consensus 177 -----~~-~~~~~l~~~~~~ 190 (258)
T TIGR01949 177 -----YT-GDIDSFRDVVKG 190 (258)
T ss_pred -----CC-CCHHHHHHHHHh
Confidence 22 135556666543
No 155
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=72.14 E-value=48 Score=33.18 Aligned_cols=126 Identities=18% Similarity=0.277 Sum_probs=64.8
Q ss_pred HhHHHHHhhHhcCCcEEEecc--CCChhHHHHHHHHHHhcCCC-ceEEEe-----ecCh--h--hHhcHHHHH----hh-
Q 007349 305 KDWEDIKFGVDNQVDFYAVSF--VKDAKVVHELKDYLKSCNAD-IHVIVK-----IESA--D--SIPNLHSII----SA- 367 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~Sf--V~sa~dv~~vr~~l~~~~~~-i~IIAK-----IEt~--~--av~NldeIl----~~- 367 (607)
.+.++++.+++.|+|.|.++- .++++. +.++..+.+.+ +.+-.. +++. + .-.+..+++ +.
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~---~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENPDL---VKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCHHH---HHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 456778888889999887652 244444 45555554422 322111 1111 0 001222333 33
Q ss_pred ccEEEEcCCCcccC---CCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 368 SDGAMVARGDLGAE---LPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 368 sDGImIgRGDLg~e---lg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
+|++++. |+..+ -|. + ....+++ ++....|++. ....-+.++ +..+...|+|++|+..
T Consensus 159 ~~~ii~~--~~~~~g~~~g~-~-~~~i~~i---~~~~~ipvia---------~GGi~~~~d---i~~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 159 LEGIIYT--DISRDGTLSGP-N-FELTKEL---VKAVNVPVIA---------SGGVSSIDD---LIALKKLGVYGVIVGK 219 (230)
T ss_pred CCEEEEE--eecCCCCcCCC-C-HHHHHHH---HHhCCCCEEE---------eCCCCCHHH---HHHHHHCCCCEEEEeH
Confidence 7888863 23222 221 2 1222233 3446789888 455555554 4455668999999964
Q ss_pred cccCCCCH
Q 007349 445 ETAHGKFP 452 (607)
Q Consensus 445 ETa~G~yP 452 (607)
---.|++|
T Consensus 220 a~~~~~~~ 227 (230)
T TIGR00007 220 ALYEGKIT 227 (230)
T ss_pred HHHcCCCC
Confidence 43344443
No 156
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=72.13 E-value=1.7e+02 Score=32.74 Aligned_cols=242 Identities=16% Similarity=0.155 Sum_probs=140.0
Q ss_pred CCCHHhHHHHHhhH-hcCCcEEEeccCCChhHHHHHHHHHH-hcCCCceEEEeecCh-hhHh-cHHHHHhh-ccE--EEE
Q 007349 301 SITDKDWEDIKFGV-DNQVDFYAVSFVKDAKVVHELKDYLK-SCNADIHVIVKIESA-DSIP-NLHSIISA-SDG--AMV 373 (607)
Q Consensus 301 ~lt~kD~~dI~~al-~~gvD~I~~SfV~sa~dv~~vr~~l~-~~~~~i~IIAKIEt~-~av~-NldeIl~~-sDG--ImI 373 (607)
.+|.+|+-.|...+ +.|+|+|=+.|-.+.+...+..+.+. ..+. .+-+++-.. ..++ .++.++.. .|. +++
T Consensus 20 ~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~ 97 (409)
T COG0119 20 SFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--FICALIAALARAIKRDIEALLEAGVDRIHIFI 97 (409)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--ccchhhhhhHHhHHhhHHHHHhCCCCEEEEEE
Confidence 35778888887766 57999998876654444444334443 2221 223333211 2233 55666655 555 788
Q ss_pred cCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhc-cceEEecccccC
Q 007349 374 ARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLSGETAH 448 (607)
Q Consensus 374 gRGDLg~elg~----e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs~ETa~ 448 (607)
+-.|+-+...+ +++...-+..++.++.+|.++... +|.+. .-+..-+.+++.++..+ ++.+-| .+|-=
T Consensus 98 ~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~---~Ed~~---rt~~~~l~~~~~~~~~~ga~~i~l-~DTvG 170 (409)
T COG0119 98 ATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS---AEDAT---RTDPEFLAEVVKAAIEAGADRINL-PDTVG 170 (409)
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---eeccc---cCCHHHHHHHHHHHHHcCCcEEEE-CCCcC
Confidence 88887776544 567777789999999999887651 12111 22222255666666555 999999 58888
Q ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCChHHHHHHHhcCCCCeE
Q 007349 449 GKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSSTI 528 (607)
Q Consensus 449 G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~sG~tA~~is~~RP~~PI 528 (607)
+-.|-+.-..+..+....-.......+. -++.. .|.+...+|-+-||.-|=-|-.|-= +|+.
T Consensus 171 ~~~P~~~~~~i~~l~~~v~~~~~l~~H~-------HnD~G--~AvANslaAv~aGa~~v~~TvnGiG------ERaG--- 232 (409)
T COG0119 171 VATPNEVADIIEALKANVPNKVILSVHC-------HNDLG--MAVANSLAAVEAGADQVEGTVNGIG------ERAG--- 232 (409)
T ss_pred ccCHHHHHHHHHHHHHhCCCCCeEEEEe-------cCCcc--hHHHHHHHHHHcCCcEEEEecccce------eccc---
Confidence 8899999888888876653211111111 12223 3344445666667755656666654 5653
Q ss_pred EEEeCCHHHHhhhccCCCeEEEEeccCCCHHHHHHHHHHHHHHcCC
Q 007349 529 FAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNL 574 (607)
Q Consensus 529 IAvT~d~~taRrL~L~wGV~Pi~~~~~~d~d~~i~~Al~~ake~Gl 574 (607)
-++.+.+.-.|.+.++.. +....+.+.+.+.+--+.+-.|+
T Consensus 233 --na~l~~v~~~l~~~~~~~---~~~~idl~~l~~~s~~v~~~~~~ 273 (409)
T COG0119 233 --NAALEEVVLALALRKDYG---VDTGIDLEKLTEASRLVERLTGI 273 (409)
T ss_pred --cccHHHHHHHHHHHhhcC---CccCCCHHHHHHHHHHHHHHhCC
Confidence 356677776666665533 23334455555444444444444
No 157
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=71.90 E-value=24 Score=36.93 Aligned_cols=97 Identities=10% Similarity=0.077 Sum_probs=56.8
Q ss_pred HHHHhhHhc-CCcEEEecc------CCChhHHHH-HHHHHHhcCCCceEEEeec---ChhhHhcHHHHHhh-ccEEEEcC
Q 007349 308 EDIKFGVDN-QVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 308 ~dI~~al~~-gvD~I~~Sf------V~sa~dv~~-vr~~l~~~~~~i~IIAKIE---t~~av~NldeIl~~-sDGImIgR 375 (607)
+.+++.++. |+++|.+.- -=+.++-.+ ++...+..+.++.||+-+- +.++++......+. +|++|+.+
T Consensus 25 ~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 556788899 999986641 112222222 3334445566889999884 45556555555554 89999865
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 007349 376 GDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 408 (607)
Q Consensus 376 GDLg~elg~e~v~~~qk~II~~c~~a-GKPviva 408 (607)
-.... ..-+++...-+.| |.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~~~~~v---~~a~~~lpi~iY 134 (288)
T cd00954 105 PFYYK-FSFEEIKDYYREI---IAAAASLPMIIY 134 (288)
T ss_pred CCCCC-CCHHHHHHHHHHH---HHhcCCCCEEEE
Confidence 43311 2223333333444 5566 8999884
No 158
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=71.41 E-value=57 Score=33.20 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=74.1
Q ss_pred HHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEe--ecChhhHhcHHHHHh-hccEEEEcCCCcccCCCCCC
Q 007349 310 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIIS-ASDGAMVARGDLGAELPIED 386 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAK--IEt~~av~NldeIl~-~sDGImIgRGDLg~elg~e~ 386 (607)
+..|+..|+|+|-++ ++-.++.++|+.+. .+. +|.- ..+. +++.+-.+ -+|.+.+|+- +. ......
T Consensus 80 ~dlA~~~~adGVHLg--~~d~~~~~~r~~~~---~~~-iiG~s~~~s~---~~a~~A~~~gaDYv~~Gpv-~t-~tK~~~ 148 (221)
T PRK06512 80 SRIAGRVKADGLHIE--GNLAALAEAIEKHA---PKM-IVGFGNLRDR---HGAMEIGELRPDYLFFGKL-GA-DNKPEA 148 (221)
T ss_pred HHHHHHhCCCEEEEC--ccccCHHHHHHhcC---CCC-EEEecCCCCH---HHHHHhhhcCCCEEEECCC-CC-CCCCCC
Confidence 345667788888776 33334566666552 222 2321 1222 22222222 2799999986 32 111111
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHH
Q 007349 387 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 464 (607)
Q Consensus 387 v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 464 (607)
-|.-...+-+.++...+||+. -.+. + ..++......|+|++.+.+.--.-..|.++++-+..+..
T Consensus 149 ~p~gl~~l~~~~~~~~iPvvA---------IGGI-~---~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 149 HPRNLSLAEWWAEMIEIPCIV---------QAGS-D---LASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred CCCChHHHHHHHHhCCCCEEE---------EeCC-C---HHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHh
Confidence 111111122346667899875 2221 1 234557778899999988877667889999998888764
No 159
>PRK12483 threonine dehydratase; Reviewed
Probab=71.31 E-value=57 Score=37.59 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=92.2
Q ss_pred ceEEEeecChhhHhcHHH---------HHhh--ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchh
Q 007349 346 IHVIVKIESADSIPNLHS---------IISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLES 414 (607)
Q Consensus 346 i~IIAKIEt~~av~Nlde---------Il~~--sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeS 414 (607)
..|+.|.|+.+-.-.+.. +.+. ..||+-+ +-| ..=.-+...|+..|.|+.+.
T Consensus 52 ~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~a------SaG-----Nha~gvA~aA~~lGi~~~Iv------ 114 (521)
T PRK12483 52 NQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITA------SAG-----NHAQGVALAAARLGVKAVIV------ 114 (521)
T ss_pred CEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEE------CCC-----HHHHHHHHHHHHhCCCEEEE------
Confidence 368999999876543322 2111 3444432 222 11124566899999998773
Q ss_pred hhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHH
Q 007349 415 MIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFH 494 (607)
Q Consensus 415 M~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~ 494 (607)
.|..+....+...-..|++.++. |...-++++...+++++- ...+.. .|.+ ......-..-
T Consensus 115 -----mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e~-g~~~v~-pfdd------~~viaGqgTi 175 (521)
T PRK12483 115 -----MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEEE-GLTFVP-PFDD------PDVIAGQGTV 175 (521)
T ss_pred -----ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHhc-CCeeeC-CCCC------hHHHHHHHHH
Confidence 23333333466777889987664 445668888877776542 222111 1111 1122222334
Q ss_pred HHHHHhhcC--C-CEEEEcCChHHHHHHHhc----CCCCeEEEEeCCHH
Q 007349 495 STTMANTLN--T-PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQER 536 (607)
Q Consensus 495 a~~~A~~l~--a-~Iiv~T~sG~tA~~is~~----RP~~PIIAvT~d~~ 536 (607)
+.++.++++ . .|||..-+|.++.-++++ +|.+.||++-+...
T Consensus 176 g~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a 224 (521)
T PRK12483 176 AMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDS 224 (521)
T ss_pred HHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 667888775 4 789999999887766654 79999999998643
No 160
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=71.31 E-value=59 Score=35.26 Aligned_cols=92 Identities=20% Similarity=0.317 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 007349 329 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 329 a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviv 407 (607)
.++..++.+|.++.| +..++ |+=..+.+|.+.+. +|.+=||-+|+.- . .+++.+.+.|||+|+
T Consensus 75 ~e~~~~L~~~~~~~G--i~~~s---tpfd~~svd~l~~~~v~~~KIaS~~~~n------~-----pLL~~~A~~gkPvil 138 (329)
T TIGR03569 75 EEDHRELKEYCESKG--IEFLS---TPFDLESADFLEDLGVPRFKIPSGEITN------A-----PLLKKIARFGKPVIL 138 (329)
T ss_pred HHHHHHHHHHHHHhC--CcEEE---EeCCHHHHHHHHhcCCCEEEECcccccC------H-----HHHHHHHhcCCcEEE
Confidence 345555666665543 34444 33344445555556 7899999888742 2 356667788999999
Q ss_pred EcccchhhhcCCCCChHhhhhHHHHHHh-ccc---eEEeccc
Q 007349 408 ATNMLESMIDHPTPTRAEVSDIAIAVRE-GAD---AVMLSGE 445 (607)
Q Consensus 408 aTqmLeSM~~~~~PtrAEv~Dv~nav~~-G~D---~vmLs~E 445 (607)
.|-| .|.+|+...+.++.. |.+ .++|--.
T Consensus 139 StGm---------atl~Ei~~Av~~i~~~G~~~~~i~llhC~ 171 (329)
T TIGR03569 139 STGM---------ATLEEIEAAVGVLRDAGTPDSNITLLHCT 171 (329)
T ss_pred ECCC---------CCHHHHHHHHHHHHHcCCCcCcEEEEEEC
Confidence 7654 467899998888874 543 4554433
No 161
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=71.04 E-value=65 Score=33.59 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|++.|.|+.+. .|..+....+...-..|++.+...+... + ..-++++...+++.+-+..++.
T Consensus 67 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~~~~~ 133 (291)
T cd01561 67 GLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPNAFWL 133 (291)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCCcEEe
Confidence 4556899999998773 2333333445566678999887753211 1 2367777766665432111111
Q ss_pred CCCCCCccccCCCChhHHHH-HHHHHHHhhcC--C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFA-FHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia-~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
.+ +.+ ....+.-. .-+.++.++++ . .||+.+-+|.++.-++ .+.|...|+++-+..
T Consensus 134 ~~-~~~------p~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 197 (291)
T cd01561 134 NQ-FEN------PANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVG 197 (291)
T ss_pred cC-CCC------chHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11 110 01122222 33567888886 3 6889999998875544 567999999999874
No 162
>PLN02321 2-isopropylmalate synthase
Probab=71.00 E-value=66 Score=37.98 Aligned_cols=155 Identities=16% Similarity=0.232 Sum_probs=94.3
Q ss_pred CCHHhHHHHHhh-HhcCCcEEEecc-CCChhHHHHHHHHHHhcCCCc---eEEEeec-----ChhhHhcHHHHHhhc---
Q 007349 302 ITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADI---HVIVKIE-----SADSIPNLHSIISAS--- 368 (607)
Q Consensus 302 lt~kD~~dI~~a-l~~gvD~I~~Sf-V~sa~dv~~vr~~l~~~~~~i---~IIAKIE-----t~~av~NldeIl~~s--- 368 (607)
++.+++-.|... .+.|+|.|=+.| .-++.|...++...+.....+ ..+++|- +.++++..-+-+.-+
T Consensus 105 ~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId~A~~al~~a~~~ 184 (632)
T PLN02321 105 LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDIDAAWEAVKHAKRP 184 (632)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHHHHHHHhcCCCCC
Confidence 577887666544 468999998766 567778877776654322111 1122221 333333222211111
Q ss_pred -cEEEEcCCCcccC----CCCCCHHHHHHHHHHHHHHcCCC-EEEEcccchhhhcCCCCChHh---hhhHHH-HHHhccc
Q 007349 369 -DGAMVARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKP-VIVATNMLESMIDHPTPTRAE---VSDIAI-AVREGAD 438 (607)
Q Consensus 369 -DGImIgRGDLg~e----lg~e~v~~~qk~II~~c~~aGKP-vivaTqmLeSM~~~~~PtrAE---v~Dv~n-av~~G~D 438 (607)
=.++++-.|+-.+ +..+++....+++++.|+++|.. +.+. .+.-+|++ +..++. ++..|+|
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs---------~EDa~rtd~d~l~~~~~~a~~aGa~ 255 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS---------PEDAGRSDPEFLYRILGEVIKAGAT 255 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe---------cccCCCCCHHHHHHHHHHHHHcCCC
Confidence 2355555555322 23356777778899999999985 5552 22333443 444444 4567999
Q ss_pred eEEecccccCCCCHHHHHHHHHHHHHHh
Q 007349 439 AVMLSGETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 439 ~vmLs~ETa~G~yPveaV~~m~~I~~~a 466 (607)
.+.|. +|.=...|.+.-+++..+....
T Consensus 256 ~I~L~-DTvG~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 256 TLNIP-DTVGYTLPSEFGQLIADIKANT 282 (632)
T ss_pred EEEec-ccccCCCHHHHHHHHHHHHHhc
Confidence 99995 8998999999999988887654
No 163
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=70.42 E-value=63 Score=35.46 Aligned_cols=216 Identities=16% Similarity=0.167 Sum_probs=122.4
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEee--cChhhHhcHHHHHhhccEEEEcCCCcccCCCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI--ESADSIPNLHSIISASDGAMVARGDLGAELPIE 385 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKI--Et~~av~NldeIl~~sDGImIgRGDLg~elg~e 385 (607)
+.|..-.+.|+|.|-+. |.+.++...+++.-+.. +++++|-| .-..| +..+-.-+|++-|-||.++
T Consensus 46 ~Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHFd~~lA---l~a~~~G~~~iRINPGNig------ 113 (360)
T PRK00366 46 AQIKRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHFDYRLA---LAAAEAGADALRINPGNIG------ 113 (360)
T ss_pred HHHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCCCHHHH---HHHHHhCCCEEEECCCCCC------
Confidence 45555567899998875 57888888777766544 69999987 33333 3344445899999999983
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEc--ccchhhhc--CCCCChHh-----hhhHHHHHHhccceEEecccccCCCCHHHHH
Q 007349 386 DVPLLQEDIIRRCRSMQKPVIVAT--NMLESMID--HPTPTRAE-----VSDIAIAVREGADAVMLSGETAHGKFPLKAV 456 (607)
Q Consensus 386 ~v~~~qk~II~~c~~aGKPvivaT--qmLeSM~~--~~~PtrAE-----v~Dv~nav~~G~D~vmLs~ETa~G~yPveaV 456 (607)
....--+.++++|+++|+|+=+-. -=|+.-.. ...||..- +..+.-+-..|++=+.+|-- -..|..+|
T Consensus 114 ~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~K---sS~v~~~i 190 (360)
T PRK00366 114 KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVK---ASDVQDLI 190 (360)
T ss_pred chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCCHHHHH
Confidence 445667899999999999973322 22222211 12344322 33344555678888888844 44577777
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEE-EcCChHHHHHHHhcCCCCeEEEEeCCH
Q 007349 457 KVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIV-FTRTGSMAVILSHYRPSSTIFAFTNQE 535 (607)
Q Consensus 457 ~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv-~T~sG~tA~~is~~RP~~PIIAvT~d~ 535 (607)
+.-+.++...+.-+.. .. .+-.......+..+++.+.. |++-++-.|=| +|..---=-.++ .
T Consensus 191 ~ayrlla~~~dyPLHl-Gv-TEAG~~~~G~iKSa~gig~L-L~~GIGDTiRVSLt~~P~~EV~va--------------~ 253 (360)
T PRK00366 191 AAYRLLAKRCDYPLHL-GV-TEAGMGFKGTVKSAAGLGAL-LQEGIGDTIRVSLTADPVEEVKVG--------------Q 253 (360)
T ss_pred HHHHHHHhcCCCCcee-cc-cCCCCCCCceehhHHHHHHH-HHhcCCCeEEEeCCCCCHHHHHHH--------------H
Confidence 7766666544311100 00 00001112234555655543 44444443333 444431111111 1
Q ss_pred HHHhhhccC-CCeEEEEeccC
Q 007349 536 RIKQRLVLY-QGVMPIYMQFS 555 (607)
Q Consensus 536 ~taRrL~L~-wGV~Pi~~~~~ 555 (607)
++.+.|.|. +|+.-+.++.-
T Consensus 254 ~IL~slglr~~g~~IisCPgC 274 (360)
T PRK00366 254 EILQSLGLRSRGPEVISCPTC 274 (360)
T ss_pred HHHHHcCCccCCCeEEECCCC
Confidence 346667774 57776666643
No 164
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=70.36 E-value=75 Score=34.76 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=94.0
Q ss_pred CCCccccCCCccCCCCCCHHhHHHHHhh-HhcCCcEEEe-ccCCChh------HHHHHHHHHHh-cCCCceEEEeecChh
Q 007349 286 SRRHLNVRGKSANLPSITDKDWEDIKFG-VDNQVDFYAV-SFVKDAK------VVHELKDYLKS-CNADIHVIVKIESAD 356 (607)
Q Consensus 286 s~Kgvn~p~~~~~lp~lt~kD~~dI~~a-l~~gvD~I~~-SfV~sa~------dv~~vr~~l~~-~~~~i~IIAKIEt~~ 356 (607)
-|-|..-|+. .++.+++-.|... .+.|++.|=+ ||| ++. |-.++.+.+.. .+..+..++ =+.+
T Consensus 54 lRDG~Q~~g~-----~~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~~~~~~l~--~n~~ 125 (347)
T PLN02746 54 PRDGLQNEKN-----IVPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEGARFPVLT--PNLK 125 (347)
T ss_pred CCccCcCCCC-----CCCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccCCceeEEc--CCHH
Confidence 3445555554 3566777555544 4789999865 566 432 32333333332 122223332 2444
Q ss_pred hHhcHHHHHhh-ccEEEEc--CCCccc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhh-hcCCCCChHh---
Q 007349 357 SIPNLHSIISA-SDGAMVA--RGDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESM-IDHPTPTRAE--- 425 (607)
Q Consensus 357 av~NldeIl~~-sDGImIg--RGDLg~----elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM-~~~~~PtrAE--- 425 (607)
+++.. ++. .|.|.+. -.|+=. ....++.....+++++.++++|..+-.. + || ..+|.-+|.+
T Consensus 126 die~A---~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~---i-s~~fg~p~~~r~~~~~ 198 (347)
T PLN02746 126 GFEAA---IAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY---V-SCVVGCPIEGPVPPSK 198 (347)
T ss_pred HHHHH---HHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE---E-EeeecCCccCCCCHHH
Confidence 44443 333 5655443 222211 1223566677779999999999988421 0 12 1345555544
Q ss_pred hhhH-HHHHHhccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 426 VSDI-AIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 426 v~Dv-~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
+.++ -.+...|+|.|.|. +|.=--.|.+..+.+..+..+
T Consensus 199 l~~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 199 VAYVAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHh
Confidence 3333 34777899999995 888788899999998888644
No 165
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=70.35 E-value=76 Score=33.21 Aligned_cols=88 Identities=13% Similarity=0.203 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Q 007349 331 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 410 (607)
Q Consensus 331 dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTq 410 (607)
.+..++++.++. .+.+++-+-+.+.++-+ .+.+|.+-||-+++. |-.+++++.+.||||++.
T Consensus 67 gl~~L~~~~~~~--Gl~~~Tev~d~~~v~~~---~e~vdilqIgs~~~~-----------n~~LL~~va~tgkPVilk-- 128 (250)
T PRK13397 67 GIRYLHEVCQEF--GLLSVSEIMSERQLEEA---YDYLDVIQVGARNMQ-----------NFEFLKTLSHIDKPILFK-- 128 (250)
T ss_pred HHHHHHHHHHHc--CCCEEEeeCCHHHHHHH---HhcCCEEEECccccc-----------CHHHHHHHHccCCeEEEe--
Confidence 344556665554 36788877666665544 446999999987764 255777788889999994
Q ss_pred cchhhhcCC-CCChHhhhhHHHHHHh-ccceEEec
Q 007349 411 MLESMIDHP-TPTRAEVSDIAIAVRE-GADAVMLS 443 (607)
Q Consensus 411 mLeSM~~~~-~PtrAEv~Dv~nav~~-G~D~vmLs 443 (607)
++ -+|-.|+...+..+.. |..-++|.
T Consensus 129 -------~G~~~t~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 129 -------RGLMATIEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred -------CCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 44 6778898888888774 66556665
No 166
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.16 E-value=35 Score=34.63 Aligned_cols=103 Identities=13% Similarity=0.206 Sum_probs=56.4
Q ss_pred cCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCC--------CcccCCCCC--CHHHHHHHH
Q 007349 325 FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARG--------DLGAELPIE--DVPLLQEDI 394 (607)
Q Consensus 325 fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRG--------DLg~elg~e--~v~~~qk~I 394 (607)
...++++..++.+.+.+.|-++.=|. .-++++++.+.++.+....++||-| +.+.+.|.+ -.|..-..+
T Consensus 22 r~~~~~~a~~i~~al~~~Gi~~iEit-l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~v 100 (212)
T PRK05718 22 VINKLEDAVPLAKALVAGGLPVLEVT-LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPL 100 (212)
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEEe-cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHH
Confidence 34555555555555544443322222 4555666666666554444555533 111111110 123334588
Q ss_pred HHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEe
Q 007349 395 IRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 442 (607)
Q Consensus 395 I~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 442 (607)
++.|++.+.|.+= - .-|..| +..+...|+|.+=|
T Consensus 101 i~~a~~~~i~~iP---------G--~~TptE---i~~a~~~Ga~~vKl 134 (212)
T PRK05718 101 LKAAQEGPIPLIP---------G--VSTPSE---LMLGMELGLRTFKF 134 (212)
T ss_pred HHHHHHcCCCEeC---------C--CCCHHH---HHHHHHCCCCEEEE
Confidence 9999999999872 1 122233 66899999999888
No 167
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=70.08 E-value=13 Score=38.91 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=45.6
Q ss_pred HhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhh--HhcHHHHHhh-ccEEEEc
Q 007349 305 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVA 374 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a--v~NldeIl~~-sDGImIg 374 (607)
...+++..+++.|+|+|.+..+ +++++.++.+++... .++++.| --| .+|+.++++. +|+|.++
T Consensus 189 ~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~i~a----sGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 189 ETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVLLEA----SGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeEEEE----ECCCCHHHHHHHHHcCCCEEEEc
Confidence 3456677788899999999765 668888777777543 3444433 223 4788888887 9999886
No 168
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.95 E-value=16 Score=38.69 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=49.3
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcC--CCceEEEeecChhhH--hcHHHHHhh-ccEEEEcC
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCN--ADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~--~~i~IIAKIEt~~av--~NldeIl~~-sDGImIgR 375 (607)
..+++..+++.|+|.|.+=.. +++++.++.+++.+.+ .++ +||-.-|+ +|+.++++. +|+|.+|.
T Consensus 191 ~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERV----KIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCE----EEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 456778889999999999765 8999999999887765 343 35544444 577777777 89999983
No 169
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=69.94 E-value=1.8e+02 Score=32.23 Aligned_cols=149 Identities=15% Similarity=0.193 Sum_probs=79.0
Q ss_pred CCHHhHHHHH-hhHhcCCcEEEecc----C-----------CChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHH
Q 007349 302 ITDKDWEDIK-FGVDNQVDFYAVSF----V-----------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII 365 (607)
Q Consensus 302 lt~kD~~dI~-~al~~gvD~I~~Sf----V-----------~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl 365 (607)
.++.|+.++. ..-+.|+|+|-+.+ . ++++.+.++-+.+.+. .++++++||= + -+.++.+++
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLs-P-n~t~i~~ia 200 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMT-P-NITDITQPA 200 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeC-C-ChhhHHHHH
Confidence 4667776664 44467899987754 2 2334444443333332 3589999994 4 244566666
Q ss_pred hh-----ccEEEEc---CCCccc--C-------------CC-CC---CHHHHHHHHHHHHHHc------CCCEEEEcccc
Q 007349 366 SA-----SDGAMVA---RGDLGA--E-------------LP-IE---DVPLLQEDIIRRCRSM------QKPVIVATNML 412 (607)
Q Consensus 366 ~~-----sDGImIg---RGDLg~--e-------------lg-~e---~v~~~qk~II~~c~~a------GKPvivaTqmL 412 (607)
+. +|||.+- ..=+++ + .| +. =-|.++..+-+.+++. +.|++-.+
T Consensus 201 ~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvG--- 277 (385)
T PLN02495 201 RVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIG--- 277 (385)
T ss_pred HHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEEC---
Confidence 63 6888763 110111 1 00 11 1233333332233332 47776532
Q ss_pred hhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCC-HHHHHHHHHHHHHHhh
Q 007349 413 ESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVALRTE 467 (607)
Q Consensus 413 eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~y-PveaV~~m~~I~~~aE 467 (607)
..- .-.|++.+++.|+|+|.+. |+.-.+ |--.-++.+.+...++
T Consensus 278 ------GI~---s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 278 ------GVE---TGGDAAEFILLGADTVQVC--TGVMMHGYPLVKNLCAELQDFMK 322 (385)
T ss_pred ------CCC---CHHHHHHHHHhCCCceeEe--eeeeecCcHHHHHHHHHHHHHHH
Confidence 222 2458999999999999997 555455 5433334444444344
No 170
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=69.84 E-value=56 Score=34.54 Aligned_cols=117 Identities=20% Similarity=0.269 Sum_probs=75.5
Q ss_pred ceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccc---hhhhcCCCC
Q 007349 346 IHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML---ESMIDHPTP 421 (607)
Q Consensus 346 i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmL---eSM~~~~~P 421 (607)
+++...+.+..-++.+.+-+.. .+.||+..-+| +.++....-+++.+.|++.|.+|-..-..+ |.+.....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7899998877656655555554 78999986665 666778888999999999998765322221 111111000
Q ss_pred ChHhhhhHHHHHH-hccceEEecccccCCCC---HHHHHHHHHHHHHHh
Q 007349 422 TRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 466 (607)
Q Consensus 422 trAEv~Dv~nav~-~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 466 (607)
+.-...+...++. .|+|.+-.+--|..|.| |.--++.|..|+...
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~ 199 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT 199 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh
Confidence 0112334457775 79999998878888888 444456666665544
No 171
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=69.84 E-value=59 Score=33.88 Aligned_cols=118 Identities=9% Similarity=0.092 Sum_probs=72.4
Q ss_pred HHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007349 392 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 471 (607)
Q Consensus 392 k~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 471 (607)
.-+...|+..|.++++-. |....-......-..|++.+...+ . .-++++...+++.+-. .++
T Consensus 78 ~alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~-----~-~~~~~~~a~~la~~~~-~~~ 139 (304)
T cd01562 78 QGVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGE-----D-FDEAEAKARELAEEEG-LTF 139 (304)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHhcC-CEE
Confidence 356678999999998731 111122234567778999877753 2 4467777666655422 211
Q ss_pred CCCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHHhc----CCCCeEEEEeCC
Q 007349 472 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQ 534 (607)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is~~----RP~~PIIAvT~d 534 (607)
..+ +.+. .........+.++..+++. .||+.+-||.|..-++++ .|...|+++.+.
T Consensus 140 ~~~-~~n~------~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~ 201 (304)
T cd01562 140 IHP-FDDP------DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPE 201 (304)
T ss_pred eCC-CCCc------chhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 111 1100 1112223346678777764 688899999988777655 788999999995
No 172
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=69.80 E-value=63 Score=34.57 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=75.6
Q ss_pred ccCCChhHHHHHHHHHHhcCCCceEEEeecChhh-HhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHH-H
Q 007349 324 SFVKDAKVVHELKDYLKSCNADIHVIVKIESADS-IPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-S 400 (607)
Q Consensus 324 SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a-v~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~-~ 400 (607)
.-..++++|.++++.. +++||+|+=- + +...+.+.+. +|.| | ..+...+ -...+...+ +
T Consensus 58 ~Rm~~p~~I~aIk~~V-----~iPVigk~Ri--gh~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~K~~ 119 (293)
T PRK04180 58 ARMADPKMIEEIMDAV-----SIPVMAKARI--GHFVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHIDKWD 119 (293)
T ss_pred eecCCHHHHHHHHHhC-----CCCeEEeehh--hHHHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHHHHH
Confidence 3456888888777654 6788886632 3 5556666655 7887 4 2222211 112222223 3
Q ss_pred cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 007349 401 MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 401 aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 470 (607)
.+.|+..- . ..+.+.-+++..|+|.|--+||.-.|+ -+|||+-|+.|-.++-.-.
T Consensus 120 f~~~fmad-----------~---~~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L~ 174 (293)
T PRK04180 120 FTVPFVCG-----------A---RNLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRLT 174 (293)
T ss_pred cCCCEEcc-----------C---CCHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHHh
Confidence 47776541 1 235567799999999999999999998 7899999999998887543
No 173
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=69.76 E-value=1.2e+02 Score=31.20 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=67.8
Q ss_pred CCCHHhHHHHHhhHhcCCcEEEecc----------------CCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHH
Q 007349 301 SITDKDWEDIKFGVDNQVDFYAVSF----------------VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSI 364 (607)
Q Consensus 301 ~lt~kD~~dI~~al~~gvD~I~~Sf----------------V~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeI 364 (607)
.-+..+...+..-+..++|+|=+.+ .++++.+.++-+.+.. .+++|.+||=--.--.+.-++
T Consensus 76 ~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--~~~PVsvKiR~~~~~~~~~~~ 153 (231)
T TIGR00736 76 FVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE--LNKPIFVKIRGNCIPLDELID 153 (231)
T ss_pred cCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--CCCcEEEEeCCCCCcchHHHH
Confidence 3455566555444556788876652 2355555554444442 367899999431111122244
Q ss_pred Hhh-----ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc--CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhcc
Q 007349 365 ISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 437 (607)
Q Consensus 365 l~~-----sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~a--GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~ 437 (607)
++. +|+|.|..+. ..-+.+.-+.|+..+++ .+|+|- .+..-+.. |+..++..|+
T Consensus 154 a~~l~~aGad~i~Vd~~~-------~g~~~a~~~~I~~i~~~~~~ipIIg---------NGgI~s~e---da~e~l~~GA 214 (231)
T TIGR00736 154 ALNLVDDGFDGIHVDAMY-------PGKPYADMDLLKILSEEFNDKIIIG---------NNSIDDIE---SAKEMLKAGA 214 (231)
T ss_pred HHHHHHcCCCEEEEeeCC-------CCCchhhHHHHHHHHHhcCCCcEEE---------ECCcCCHH---HHHHHHHhCC
Confidence 332 7999884211 11122334444444444 388776 55555554 5556667799
Q ss_pred ceEEecc
Q 007349 438 DAVMLSG 444 (607)
Q Consensus 438 D~vmLs~ 444 (607)
|+||+.-
T Consensus 215 d~VmvgR 221 (231)
T TIGR00736 215 DFVSVAR 221 (231)
T ss_pred CeEEEcH
Confidence 9999863
No 174
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=69.72 E-value=49 Score=32.22 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=65.2
Q ss_pred CHHhHHHHHhhHhcCCcEEEe--ccCCC--hhHHHHHHHHHHhcCCCceEEE--eecChhhHhcHHHHHhh-ccEEEEcC
Q 007349 303 TDKDWEDIKFGVDNQVDFYAV--SFVKD--AKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 303 t~kD~~dI~~al~~gvD~I~~--SfV~s--a~dv~~vr~~l~~~~~~i~IIA--KIEt~~av~NldeIl~~-sDGImIgR 375 (607)
+..+..++..++..++++|=+ +|... .+.+..++++ ..+..+++ |+.+.. -.-+++..+. +|++.+-
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~----~~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h- 84 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREA----FPDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL- 84 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE-
Confidence 334555555555555888766 55421 2333333332 23456666 666552 1224555554 8988873
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 376 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 376 GDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.+..+...+++++.|++.|++++++. -...|..| ...+...|+|.+.+.
T Consensus 85 --------~~~~~~~~~~~i~~~~~~g~~~~v~~--------~~~~t~~e---~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 --------GAAPLSTIKKAVKAAKKYGKEVQVDL--------IGVEDPEK---RAKLLKLGVDIVILH 133 (202)
T ss_pred --------eeCCHHHHHHHHHHHHHcCCeEEEEE--------eCCCCHHH---HHHHHHCCCCEEEEc
Confidence 11123445789999999999998630 11123333 335777899998883
No 175
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=69.62 E-value=1.2e+02 Score=32.50 Aligned_cols=126 Identities=8% Similarity=0.003 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+..+|++.|.++.+-.. ....+ +. ...-.-..|++..+...+.... ..-.+.+....+..+-...+..
T Consensus 86 alA~~a~~~G~~~~ivvp------~~~~~---~~-~~~l~~~~Ga~v~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 154 (329)
T PRK14045 86 VTGLAAKKLGLDAVLVLR------GKEEL---KG-NYLLDKIMGIETRVYEAKDSFE-LMKYAEEVAEELKGEGRKPYII 154 (329)
T ss_pred HHHHHHHHcCCeEEEEEe------CCCCC---Cc-CHHHHHHCCCEEEEECCCcccc-hHHHHHHHHHHHHhcCCCEEEE
Confidence 466789999999876321 11111 11 1111234688877654322111 1223444443333221111111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC-----C-CEEEEcCChHHHHHHHhc----CCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN-----T-PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~-----a-~Iiv~T~sG~tA~~is~~----RP~~PIIAvT~d~ 535 (607)
+.... ...-.......+.++.++++ . .||+.+-||.|+--++++ .|.+.|+++-+..
T Consensus 155 ----p~~~~--n~~~~~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 155 ----PPGGA--SPVGTLGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred ----CCCCC--chhHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 11110 01122333334447776653 3 689999999998777664 5999999999965
No 176
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=69.59 E-value=1.5e+02 Score=31.04 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=62.7
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-----ccEEEEc-----CC-Cccc-------CC----CCC
Q 007349 328 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVA-----RG-DLGA-------EL----PIE 385 (607)
Q Consensus 328 sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-----sDGImIg-----RG-DLg~-------el----g~e 385 (607)
+++.+.++-+.+.+. .+++|++||- ..+++..++++. +|+|.+. +. |+.. .. |..
T Consensus 141 ~~~~~~eiv~~vr~~-~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~ 217 (300)
T TIGR01037 141 DPELSADVVKAVKDK-TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPA 217 (300)
T ss_pred CHHHHHHHHHHHHHh-cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchh
Confidence 344444433333332 2578999994 133444455442 7999873 21 2111 11 111
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 386 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 386 ~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
..+...+.+-+..+..++|+|. ....-+. .|+..++..|+|++|+....- ..| .+.+++..+
T Consensus 218 ~~~~~l~~v~~i~~~~~ipvi~---------~GGI~s~---~da~~~l~~GAd~V~igr~~l--~~p----~~~~~i~~~ 279 (300)
T TIGR01037 218 IKPIALRMVYDVYKMVDIPIIG---------VGGITSF---EDALEFLMAGASAVQVGTAVY--YRG----FAFKKIIEG 279 (300)
T ss_pred hhHHHHHHHHHHHhcCCCCEEE---------ECCCCCH---HHHHHHHHcCCCceeecHHHh--cCc----hHHHHHHHH
Confidence 2233344444445556899887 3333333 356788889999999974322 345 233444444
Q ss_pred hhcCC
Q 007349 466 TESSL 470 (607)
Q Consensus 466 aE~~~ 470 (607)
.++.+
T Consensus 280 l~~~~ 284 (300)
T TIGR01037 280 LIAFL 284 (300)
T ss_pred HHHHH
Confidence 44433
No 177
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=69.38 E-value=1.5e+02 Score=31.05 Aligned_cols=145 Identities=17% Similarity=0.202 Sum_probs=73.5
Q ss_pred HHhHH-HHHhhHhcC-CcEEEec------------cCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh--
Q 007349 304 DKDWE-DIKFGVDNQ-VDFYAVS------------FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-- 367 (607)
Q Consensus 304 ~kD~~-dI~~al~~g-vD~I~~S------------fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-- 367 (607)
..|.. ..+.+.+.| +|+|-+. +-++.+.+.++-+.+.+.- +++|++||= + .++++.++++.
T Consensus 103 ~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~-~-~~~~~~~~a~~l~ 179 (301)
T PRK07259 103 EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLT-P-NVTDIVEIAKAAE 179 (301)
T ss_pred HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcC-C-CchhHHHHHHHHH
Confidence 44553 334555678 9998552 1223333333333333322 688999994 2 23445555543
Q ss_pred ---ccEEEE-----cCC-Ccc-------cCC----CCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhh
Q 007349 368 ---SDGAMV-----ARG-DLG-------AEL----PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVS 427 (607)
Q Consensus 368 ---sDGImI-----gRG-DLg-------~el----g~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~ 427 (607)
+|+|.+ ++. |+- ... |....+...+.+-+..+..++|++. ....-+. .
T Consensus 180 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~---------~GGI~~~---~ 247 (301)
T PRK07259 180 EAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIG---------MGGISSA---E 247 (301)
T ss_pred HcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEE---------ECCCCCH---H
Confidence 688865 211 221 011 1111222333333334445899887 3343333 3
Q ss_pred hHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcC
Q 007349 428 DIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 469 (607)
Q Consensus 428 Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 469 (607)
|+..++..|+|+|++..---. -| .+..++....+.+
T Consensus 248 da~~~l~aGAd~V~igr~ll~--~P----~~~~~i~~~l~~~ 283 (301)
T PRK07259 248 DAIEFIMAGASAVQVGTANFY--DP----YAFPKIIEGLEAY 283 (301)
T ss_pred HHHHHHHcCCCceeEcHHHhc--Cc----HHHHHHHHHHHHH
Confidence 566888899999998744332 34 3344444444443
No 178
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=69.12 E-value=60 Score=35.59 Aligned_cols=90 Identities=16% Similarity=0.253 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Q 007349 330 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 409 (607)
Q Consensus 330 ~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaT 409 (607)
+.+..++++.++.| +.+++-+-..+.++-+ .+.+|.+-||-+++.- -.++..+.+.||||++.|
T Consensus 169 e~l~~L~~~~~~~G--l~~~t~v~d~~~~~~l---~~~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEYG--LAVISEIVNPADVEVA---LDYVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHcC--CCEEEeeCCHHHHHHH---HHhCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 45566777776544 6677866666555444 4459999999877742 356777788999999954
Q ss_pred ccchhhhcCCCCChHhhhhHHHHHH-hccceEEec
Q 007349 410 NMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLS 443 (607)
Q Consensus 410 qmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs 443 (607)
.| .+|..|+...++.+. .|.+-++|.
T Consensus 233 G~--------~~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 233 GL--------SATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CC--------CCCHHHHHHHHHHHHHCCCCCEEEE
Confidence 33 266788888887776 466555554
No 179
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=68.86 E-value=62 Score=33.63 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=78.8
Q ss_pred CCCCHHhH-HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhH----------hcHHHHHhh-
Q 007349 300 PSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI----------PNLHSIISA- 367 (607)
Q Consensus 300 p~lt~kD~-~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av----------~NldeIl~~- 367 (607)
|.-+..|. +-+..++++|+|.|.++. --+...+..+ +.++.++.+|++..++ ..+++.++.
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~G 106 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLG 106 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcC
Confidence 44466676 455788999999998862 2222222222 3457788888853333 224555554
Q ss_pred ccEEEEc--CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccc----chhhhcCCCCChHhhhh-HHHHHHhccceE
Q 007349 368 SDGAMVA--RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM----LESMIDHPTPTRAEVSD-IAIAVREGADAV 440 (607)
Q Consensus 368 sDGImIg--RGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqm----LeSM~~~~~PtrAEv~D-v~nav~~G~D~v 440 (607)
+|.+-+- -|++ ..+++....+++.+.|++.|.|+++-..- +|. . -+..++.. ..-+...|+|.+
T Consensus 107 ad~v~~~~~~g~~----~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~---~--~~~~~i~~a~~~a~e~GAD~v 177 (267)
T PRK07226 107 ADAVSVHVNVGSE----TEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKN---E--YDPEVVAHAARVAAELGADIV 177 (267)
T ss_pred CCEEEEEEecCCh----hHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCC---C--ccHHHHHHHHHHHHHHCCCEE
Confidence 6655442 1111 12346666678999999999999872100 111 1 12223322 244557899998
Q ss_pred EecccccCCCCHHHHHHHHHHHHH
Q 007349 441 MLSGETAHGKFPLKAVKVMHTVAL 464 (607)
Q Consensus 441 mLs~ETa~G~yPveaV~~m~~I~~ 464 (607)
=.+ |+- -++.|+.++.
T Consensus 178 Kt~-------~~~-~~~~l~~~~~ 193 (267)
T PRK07226 178 KTN-------YTG-DPESFREVVE 193 (267)
T ss_pred eeC-------CCC-CHHHHHHHHH
Confidence 554 221 2456666654
No 180
>PRK15447 putative protease; Provisional
Probab=68.59 E-value=68 Score=34.08 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=73.1
Q ss_pred HhHHHHHhhH-hcCCcEEEeccCC-------ChhHHHHHHHHHHhcCCCceE-EEee-cChhhHhcHHHHHhh-ccEEEE
Q 007349 305 KDWEDIKFGV-DNQVDFYAVSFVK-------DAKVVHELKDYLKSCNADIHV-IVKI-ESADSIPNLHSIISA-SDGAMV 373 (607)
Q Consensus 305 kD~~dI~~al-~~gvD~I~~SfV~-------sa~dv~~vr~~l~~~~~~i~I-IAKI-Et~~av~NldeIl~~-sDGImI 373 (607)
...+++-.++ +.|+|.|-+.... +.+++.++.+++.+.|.++.+ +..| ...+-++.+.++++. .|+|++
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 3456666666 5699998886321 568888888888888887766 3354 445566777777776 577776
Q ss_pred cCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccccc
Q 007349 374 ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 447 (607)
Q Consensus 374 gRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa 447 (607)
+|+|. + ..+++.|.|+...|||== .| .. .+.-+-..|++.+.||-|-+
T Consensus 95 --~d~g~------l--------~~~~e~~~~l~~d~~lni---~N-----~~--a~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 95 --NDLGA------V--------RLLAERGLPFVAGPALNC---YN-----AA--TLALLARLGATRWCMPVELS 142 (301)
T ss_pred --eCHHH------H--------HHHHhcCCCEEEeccccc---CC-----HH--HHHHHHHcCCcEEEECCcCC
Confidence 34431 1 223335999988776410 01 11 12233446899999997765
No 181
>PRK08329 threonine synthase; Validated
Probab=68.55 E-value=1.8e+02 Score=31.47 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=69.3
Q ss_pred HHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007349 394 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 473 (607)
Q Consensus 394 II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 473 (607)
+...|+++|.++.+. .|..+....+...-..|++.+...+ .|. ++.+...++..+.+ .++.
T Consensus 119 lA~~aa~~G~~~~v~-----------vp~~~~~~k~~~~~~~GA~v~~v~~-----~~~-~~~~~a~~l~~~~~--~~~~ 179 (347)
T PRK08329 119 LALYSLSEGIKVHVF-----------VSYNASKEKISLLSRLGAELHFVEG-----DRM-EVHEEAVKFSKRNN--IPYV 179 (347)
T ss_pred HHHHHHHcCCcEEEE-----------ECCCChHHHHHHHHHcCCEEEEECC-----CHH-HHHHHHHHHHHhcC--Ceec
Confidence 456788999999773 3333444556677788999988753 344 45665555544322 1111
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHHhcC----------CCCeEEEEeCCH
Q 007349 474 ITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHYR----------PSSTIFAFTNQE 535 (607)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is~~R----------P~~PIIAvT~d~ 535 (607)
..+.+. + ..+...--+.+++++++. .||+.+-+|.++.-++++- +...|+++-+..
T Consensus 180 ~~~~np---~---~~eG~~t~~~Ei~eql~~pD~vvvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g 247 (347)
T PRK08329 180 SHWLNP---Y---FLEGTKTIAYEIYEQIGVPDYAFVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEG 247 (347)
T ss_pred cCCCCc---h---hhccchhHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCC
Confidence 111100 0 112222344577777765 7899999999887776433 345688888753
No 182
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=68.51 E-value=39 Score=34.92 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=56.2
Q ss_pred HHHHhhHhcCCcEEEecc------CCChhHHHHH-HHHHHhcCCCceEEEeecC---hhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVSF------VKDAKVVHEL-KDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~Sf------V~sa~dv~~v-r~~l~~~~~~i~IIAKIEt---~~av~NldeIl~~-sDGImIgRG 376 (607)
+.+++.++.|+|+|.+.- .-+.++-.++ +...+..+.+++||+.+=+ .++++......+. +|++|+.+-
T Consensus 22 ~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 556788899999987641 1223333333 3334455667899998843 2333333333333 899999865
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
.+.. .+-+.+...-+.|+ .+.+.|+++.
T Consensus 102 ~y~~-~~~~~~~~~~~~ia---~~~~~pi~iY 129 (281)
T cd00408 102 YYNK-PSQEGIVAHFKAVA---DASDLPVILY 129 (281)
T ss_pred cCCC-CCHHHHHHHHHHHH---hcCCCCEEEE
Confidence 5433 22234444444444 4468999884
No 183
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=68.18 E-value=1.5e+02 Score=31.11 Aligned_cols=142 Identities=15% Similarity=0.212 Sum_probs=77.9
Q ss_pred CccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEec---------------------cCCCh----hHHHHHHHHHHh-
Q 007349 288 RHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVS---------------------FVKDA----KVVHELKDYLKS- 341 (607)
Q Consensus 288 Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~S---------------------fV~sa----~dv~~vr~~l~~- 341 (607)
+|+.|++.-.--|.+..+..+.+.+..+.|++++.+- ++++- .......+.+..
T Consensus 6 ~g~~l~npi~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~ 85 (300)
T TIGR01037 6 FGIRFKNPLILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPV 85 (300)
T ss_pred CCEECCCCCEeCCcCCCCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHH
Confidence 4566666543333232344455666667799988771 11100 012222222221
Q ss_pred -cCCCceEEEee--cChhhHhcHHHHHhh----ccEEEEcCCCcccCCCC--------CCHHHHHHHHHHHHHHc-CCCE
Q 007349 342 -CNADIHVIVKI--ESADSIPNLHSIISA----SDGAMVARGDLGAELPI--------EDVPLLQEDIIRRCRSM-QKPV 405 (607)
Q Consensus 342 -~~~~i~IIAKI--Et~~av~NldeIl~~----sDGImIgRGDLg~elg~--------e~v~~~qk~II~~c~~a-GKPv 405 (607)
...+.+++++| .+++.+...-++++. +|+|=+. +..|. ..-+..-.+|+++.+++ ++|+
T Consensus 86 ~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN-----~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv 160 (300)
T TIGR01037 86 REEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELN-----LSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPV 160 (300)
T ss_pred hccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEE-----CCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCE
Confidence 12235799999 555555555555542 5777664 22221 12345567788888765 8998
Q ss_pred EEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEEecc
Q 007349 406 IVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 444 (607)
Q Consensus 406 ivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 444 (607)
.+= - .|+-.+..+++. +...|+|++.+++
T Consensus 161 ~vK---------i-~~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 161 FAK---------L-SPNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred EEE---------C-CCChhhHHHHHHHHHHcCCCEEEEEc
Confidence 872 2 245456666665 4568999999874
No 184
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=68.08 E-value=9.1 Score=42.95 Aligned_cols=49 Identities=20% Similarity=0.296 Sum_probs=40.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 101 TKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 101 TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
-.+=+.+|..-.+.+.++.|+++|++++-++.+||....+.+.|+.+|+
T Consensus 213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 213 LIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred EEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 3455578877788899999999999999999999988777777777765
No 185
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=67.93 E-value=33 Score=36.35 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=55.7
Q ss_pred HHHHhhHhcCCcEEEec------cCCChhHHHH-HHHHHHhcCCCceEEEeec--ChhhHhcHHHHHhh-ccEEEEcCCC
Q 007349 308 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE--SADSIPNLHSIISA-SDGAMVARGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~S------fV~sa~dv~~-vr~~l~~~~~~i~IIAKIE--t~~av~NldeIl~~-sDGImIgRGD 377 (607)
+.+++.+++|+|+|.+. +.-+.++-.+ ++...+..+.+++||+-+- +.++++.+....+. +|++|+.+-.
T Consensus 32 ~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~ 111 (303)
T PRK03620 32 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPY 111 (303)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 55578889999998763 1223333333 3444555677788998873 22333333333333 7999997755
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 378 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 378 Lg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
... ..-+.+...-+. .|.+.+.|+++.
T Consensus 112 y~~-~~~~~i~~~f~~---va~~~~lpi~lY 138 (303)
T PRK03620 112 LTE-APQEGLAAHVEA---VCKSTDLGVIVY 138 (303)
T ss_pred CCC-CCHHHHHHHHHH---HHHhCCCCEEEE
Confidence 421 111233333344 455668999984
No 186
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=67.91 E-value=82 Score=34.53 Aligned_cols=136 Identities=16% Similarity=0.097 Sum_probs=76.4
Q ss_pred hHhcHHHHHhh-----ccEEEEcCCCcccCCCCCCHHHHHHHHHHH-H--HHcCCCEEEEcccchhhhcCCCCChHhhhh
Q 007349 357 SIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRR-C--RSMQKPVIVATNMLESMIDHPTPTRAEVSD 428 (607)
Q Consensus 357 av~NldeIl~~-----sDGImIgRGDLg~elg~e~v~~~qk~II~~-c--~~aGKPvivaTqmLeSM~~~~~PtrAEv~D 428 (607)
|++|.+.+++. +|+++.-+|=| +. + ....+|.|+--.-=.++.....+.+.-+.+
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~~G~l-----------------~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~s 151 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVASTLGVL-----------------EAVARKYAHKIPFILKLNHNELLSYPNTYDQALTAS 151 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeCHHHH-----------------HhccccccCCCCEEEEeCCCCCCCCCCCCcccceec
Confidence 77777766654 68888764433 22 1 123578777422111221112234555788
Q ss_pred HHHHHHhccceEEecccccCC-CCHHHHHHHHHHHHHHhhcCC-CCC-CCCCCccccCCC----ChhHHHHHHHHHHHhh
Q 007349 429 IAIAVREGADAVMLSGETAHG-KFPLKAVKVMHTVALRTESSL-PVS-ITPPTQFSAHKS----HMGDMFAFHSTTMANT 501 (607)
Q Consensus 429 v~nav~~G~D~vmLs~ETa~G-~yPveaV~~m~~I~~~aE~~~-~~~-~~~~~~~~~~~~----~~~~~ia~~a~~~A~~ 501 (607)
+-.|+..|+|+|..+-= .| .+--+.++.+.+++.+++++- +.- ..|++-....+. ...+.+ ..|+.+|-+
T Consensus 152 VedAlrLGAdAV~~tvy--~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~I-a~AaRiaaE 228 (348)
T PRK09250 152 VEDALRLGAVAVGATIY--FGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLT-GQANHLAAT 228 (348)
T ss_pred HHHHHHCCCCEEEEEEe--cCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHH-HHHHHHHHH
Confidence 99999999999987522 33 333567778888888888752 110 012211110111 124555 456789999
Q ss_pred cCCCEE-E-EcCC
Q 007349 502 LNTPII-V-FTRT 512 (607)
Q Consensus 502 l~a~Ii-v-~T~s 512 (607)
++|-|| + +|.+
T Consensus 229 LGADIVKv~yp~~ 241 (348)
T PRK09250 229 IGADIIKQKLPTN 241 (348)
T ss_pred HcCCEEEecCCCC
Confidence 999766 4 4543
No 187
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=67.85 E-value=84 Score=32.99 Aligned_cols=106 Identities=14% Similarity=0.268 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 329 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 329 a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
.+.+..++++.++. .+.+++-+-....++-+. +.+|.+-||-+++.- ..+++.+.+.||||++.
T Consensus 77 ~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~---~~vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~lk 140 (266)
T PRK13398 77 EEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVA---DYADMLQIGSRNMQN-----------FELLKEVGKTKKPILLK 140 (266)
T ss_pred HHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHH---HhCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 34566778887654 467888777776665555 457999999777632 34666777899999995
Q ss_pred cccchhhhcCCCCChHhhhhHHHHHH-hccceEEe--cccccCCCCHHHHHHH
Q 007349 409 TNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVML--SGETAHGKFPLKAVKV 458 (607)
Q Consensus 409 TqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmL--s~ETa~G~yPveaV~~ 458 (607)
|.| ..+-.|+...+..+. .|-.-++| .|=....+||.+.|.+
T Consensus 141 ~G~--------~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 141 RGM--------SATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDL 185 (266)
T ss_pred CCC--------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHH
Confidence 433 346668777776666 46643444 3221345888665554
No 188
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=67.85 E-value=1.2e+02 Score=34.18 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=69.4
Q ss_pred hHHHHHhhHhcCCcEEEecc-CCChhHHHHHHHH-H--HhcC---CCceEEEeecChhhHh-------------------
Q 007349 306 DWEDIKFGVDNQVDFYAVSF-VKDAKVVHELKDY-L--KSCN---ADIHVIVKIESADSIP------------------- 359 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~Sf-V~sa~dv~~vr~~-l--~~~~---~~i~IIAKIEt~~av~------------------- 359 (607)
+.+.++..+++|++.|..|. ..-...+...+.. + ...+ ....|++|+-+++-..
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 34557788899999887764 2222222222211 0 0000 1145899987654431
Q ss_pred -cHHHHHhh-----ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc--------CCCEEEEcccchhhhcCCCCChHh
Q 007349 360 -NLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM--------QKPVIVATNMLESMIDHPTPTRAE 425 (607)
Q Consensus 360 -NldeIl~~-----sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~a--------GKPvivaTqmLeSM~~~~~PtrAE 425 (607)
+.+|-..+ +|.|.+. .|=|-+.+......+.-.|.+.+.+. .+|||.|- ..-|.
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAG---------GI~tg-- 231 (418)
T cd04742 164 ITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAG---------GIGTP-- 231 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEEC---------CCCCH--
Confidence 22222211 5899988 77777766433333344444433322 58888863 33333
Q ss_pred hhhHHHHHHhccceEEec
Q 007349 426 VSDIAIAVREGADAVMLS 443 (607)
Q Consensus 426 v~Dv~nav~~G~D~vmLs 443 (607)
.+++-++..|+|++++.
T Consensus 232 -~~vaAA~alGAd~V~~G 248 (418)
T cd04742 232 -EAAAAAFALGADFIVTG 248 (418)
T ss_pred -HHHHHHHHcCCcEEeec
Confidence 46789999999999863
No 189
>PLN02970 serine racemase
Probab=67.31 E-value=79 Score=33.83 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=88.3
Q ss_pred ceEEEeecChh---------hHhcHHHHHhh--ccEEEEc-CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccch
Q 007349 346 IHVIVKIESAD---------SIPNLHSIISA--SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLE 413 (607)
Q Consensus 346 i~IIAKIEt~~---------av~NldeIl~~--sDGImIg-RGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLe 413 (607)
..|++|.|..+ +..-+....+. ..+|+.+ .|..|. -+...|+.+|.|+.+.
T Consensus 42 ~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~aSsGN~g~------------alA~~a~~~G~~~~iv----- 104 (328)
T PLN02970 42 RSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVTHSSGNHAA------------ALALAAKLRGIPAYIV----- 104 (328)
T ss_pred CeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEEECCcHHHH------------HHHHHHHHcCCCEEEE-----
Confidence 47999999986 22222222111 3444433 333333 3556899999999773
Q ss_pred hhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHH
Q 007349 414 SMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAF 493 (607)
Q Consensus 414 SM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~ 493 (607)
-|..+.. ..+.+.-..|++.+...+ ...++.++..+++.+ ...++.. .|.+. ...+....
T Consensus 105 ----vp~~~~~--~k~~~~~~~GA~Vi~~~~------~~~~~~~~a~~la~~-~g~~~~~-~~~n~------~~~~g~~t 164 (328)
T PLN02970 105 ----VPKNAPA--CKVDAVIRYGGIITWCEP------TVESREAVAARVQQE-TGAVLIH-PYNDG------RVISGQGT 164 (328)
T ss_pred ----ECCCCCH--HHHHHHHhcCCEEEEeCC------CHHHHHHHHHHHHHh-cCCEEeC-CCCCc------chhhehHH
Confidence 2222222 234456678999887642 234566666666543 1122111 11110 11222233
Q ss_pred HHHHHHhhcCC--CEEEEcCChHHHHHHHhc----CCCCeEEEEeCCH
Q 007349 494 HSTTMANTLNT--PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQE 535 (607)
Q Consensus 494 ~a~~~A~~l~a--~Iiv~T~sG~tA~~is~~----RP~~PIIAvT~d~ 535 (607)
-+.++.++++. .||+..-+|.++.-++++ .|...|+++-+..
T Consensus 165 ~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 165 IALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred HHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 45677777754 788899999988877766 8999999998854
No 190
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=66.91 E-value=12 Score=43.05 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=74.7
Q ss_pred CCcEEEeccCCChhHHHHHHHHH-------HhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCC--------
Q 007349 317 QVDFYAVSFVKDAKVVHELKDYL-------KSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD-------- 377 (607)
Q Consensus 317 gvD~I~~SfV~sa~dv~~vr~~l-------~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGD-------- 377 (607)
+-=|+-+|+.++.+++.-..+.+ +-....+++-+.|||..|.=+++||+-. +-|+=-||=|
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 34467789999999987655443 3333458999999999999999999976 4455555433
Q ss_pred --------------cccCCCCCCHHHHHHHHHHHHHHcCCCE--EEEcccchh--hhcCCCCChHhhhhHHHHHHhccce
Q 007349 378 --------------LGAELPIEDVPLLQEDIIRRCRSMQKPV--IVATNMLES--MIDHPTPTRAEVSDIAIAVREGADA 439 (607)
Q Consensus 378 --------------Lg~elg~e~v~~~qk~II~~c~~aGKPv--ivaTqmLeS--M~~~~~PtrAEv~Dv~nav~~G~D~ 439 (607)
++++-| =+....+..+..|++.|... +++.++--. |..++.--..=..|=-.-+.+|+|+
T Consensus 283 ~~~~~~~vlPdR~~v~m~~p--fm~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg 360 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQP--FMRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDG 360 (526)
T ss_dssp TCCGCCBB---GGGGGCGSH--HHHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SE
T ss_pred hhhCCCccccccccccccCH--HHHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCc
Confidence 222211 25566788999999998765 343332211 2222211111133345678899999
Q ss_pred EEec
Q 007349 440 VMLS 443 (607)
Q Consensus 440 vmLs 443 (607)
-+..
T Consensus 361 ~WVa 364 (526)
T PF01274_consen 361 AWVA 364 (526)
T ss_dssp EEES
T ss_pred cccc
Confidence 9984
No 191
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=66.91 E-value=41 Score=35.76 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=76.5
Q ss_pred CceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-EEcccc---hhhhcCC
Q 007349 345 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNML---ESMIDHP 419 (607)
Q Consensus 345 ~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqmL---eSM~~~~ 419 (607)
.++|...+.+..-++.+..-++. .+-||+. |-.+|+++=...-+++++.|+++|.+|= =-.++= +......
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~ 152 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG 152 (285)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCccccc
Confidence 47899999888766665555555 6899996 3356777777888999999999999971 000110 1100000
Q ss_pred CCChHhhhhHHHHHH-hccceEEecccccCCCC---HHHHHHHHHHHHHHh
Q 007349 420 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 466 (607)
Q Consensus 420 ~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 466 (607)
-..-+..+...++. -|+|++..|--|+.|.| |.--.+.|.+|..+.
T Consensus 153 -~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~ 202 (285)
T PRK07709 153 -VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT 202 (285)
T ss_pred -ccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH
Confidence 00111234456664 59999999999999999 555566677765544
No 192
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=66.49 E-value=34 Score=35.74 Aligned_cols=97 Identities=16% Similarity=0.172 Sum_probs=55.7
Q ss_pred HHHHhhHhcCCcEEEec------cCCChhHHHH-HHHHHHhcCCCceEEEeec---ChhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~S------fV~sa~dv~~-vr~~l~~~~~~i~IIAKIE---t~~av~NldeIl~~-sDGImIgRG 376 (607)
+.+.+.++.|+|+|.+. +-=+.++-.+ ++...+..+.++.|++-+= +.++++......+. +|++|+.+-
T Consensus 23 ~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP 102 (285)
T TIGR00674 23 KLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTP 102 (285)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 55678889999998873 2223333333 3344455566788999883 33444444443333 799999864
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
... ..+-+.+...-+.| |.+.+.|+++.
T Consensus 103 ~y~-~~~~~~i~~~~~~i---~~~~~~pi~lY 130 (285)
T TIGR00674 103 YYN-KPTQEGLYQHFKAI---AEEVDLPIILY 130 (285)
T ss_pred cCC-CCCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 432 11213344444444 45568999874
No 193
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=66.18 E-value=1e+02 Score=31.46 Aligned_cols=134 Identities=13% Similarity=0.183 Sum_probs=71.7
Q ss_pred hHHHHHhhHhcCCcEEEec--cCCChhHHHHHHHHHHhcCCCceE-------EEeecCh-hhHhcHHHHHh----h-ccE
Q 007349 306 DWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHV-------IVKIESA-DSIPNLHSIIS----A-SDG 370 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~S--fV~sa~dv~~vr~~l~~~~~~i~I-------IAKIEt~-~av~NldeIl~----~-sDG 370 (607)
+.+|++..++.|++.+.+. ..++++-+.++.+.+ +.++.+ ..|+... +.-.+..++++ . ++.
T Consensus 86 s~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~---~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~ 162 (241)
T PRK14024 86 DDESLEAALATGCARVNIGTAALENPEWCARVIAEH---GDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSR 162 (241)
T ss_pred CHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHh---hhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCE
Confidence 4478888888999987764 335665555544333 333221 1111000 00112333333 2 566
Q ss_pred EEEc-CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCC
Q 007349 371 AMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHG 449 (607)
Q Consensus 371 ImIg-RGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G 449 (607)
+++- |.==+..-|. ++.. .+++ ++....|++. ....-+..++.........|+|++|+..---.|
T Consensus 163 iiv~~~~~~g~~~G~-d~~~-i~~i---~~~~~ipvia---------sGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g 228 (241)
T PRK14024 163 YVVTDVTKDGTLTGP-NLEL-LREV---CARTDAPVVA---------SGGVSSLDDLRALAELVPLGVEGAIVGKALYAG 228 (241)
T ss_pred EEEEeecCCCCccCC-CHHH-HHHH---HhhCCCCEEE---------eCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence 6663 2111112232 3222 2333 3456899998 445555555554443345699999998888888
Q ss_pred CCHHHHH
Q 007349 450 KFPLKAV 456 (607)
Q Consensus 450 ~yPveaV 456 (607)
+++.+-.
T Consensus 229 ~~~~~~~ 235 (241)
T PRK14024 229 AFTLPEA 235 (241)
T ss_pred CCCHHHH
Confidence 8887754
No 194
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=66.11 E-value=86 Score=33.66 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=64.4
Q ss_pred hHHHHHhhHhcCCcEEEeccCCC-hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCC
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKD-AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELP 383 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~s-a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg 383 (607)
..+.+...++.++++|..+|-.- .+-+..++ + ..+.++.++-|.+.. ...++. +|+|++-=.+=|-+.|
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~----~--~gi~v~~~v~s~~~A---~~a~~~G~D~iv~qG~eAGGH~g 172 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLH----A--AGIKVIPQVTSVREA---RKAAKAGADAIVAQGPEAGGHRG 172 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHH----H--TT-EEEEEESSHHHH---HHHHHTT-SEEEEE-TTSSEE--
T ss_pred cccccccccccceEEEEeecccchHHHHHHHH----H--cCCccccccCCHHHH---HHhhhcCCCEEEEeccccCCCCC
Confidence 44667788888999999888655 33333333 2 357899988776554 344444 8998875334444444
Q ss_pred C--CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 384 I--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 384 ~--e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
. +....+..++.+ ...+|||.|--+- .-.+++.++..|+|++++.
T Consensus 173 ~~~~~~~~L~~~v~~---~~~iPViaAGGI~------------dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 173 FEVGSTFSLLPQVRD---AVDIPVIAAGGIA------------DGRGIAAALALGADGVQMG 219 (330)
T ss_dssp -SSG-HHHHHHHHHH---H-SS-EEEESS--------------SHHHHHHHHHCT-SEEEES
T ss_pred ccccceeeHHHHHhh---hcCCcEEEecCcC------------CHHHHHHHHHcCCCEeecC
Confidence 1 124444444444 3449999874332 2446789999999999974
No 195
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=65.83 E-value=1.3e+02 Score=32.37 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=35.2
Q ss_pred CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccc---ccCCCCHHHHHHHHHHHHHHhhcC
Q 007349 402 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE---TAHGKFPLKAVKVMHTVALRTESS 469 (607)
Q Consensus 402 GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E---Ta~G~yPveaV~~m~~I~~~aE~~ 469 (607)
..|+|.+.- .-+ -.|+..++..|+|+++++.- .... =+-..++++..+..+....
T Consensus 255 ~ipIiasGG---------Ir~---~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~ 312 (326)
T cd02811 255 DLPLIASGG---------IRN---GLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTA 312 (326)
T ss_pred CCcEEEECC---------CCC---HHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHH
Confidence 688887433 222 35889999999999999741 1121 2344556677666666643
No 196
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=65.79 E-value=1.2e+02 Score=29.69 Aligned_cols=121 Identities=15% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCHHhHHHHHhhHhcCCcEEEec--cCCChhHHHHHHHHHHhcCCCceEEE--eecChhhHhcHHHHHhh-ccEEEEcCC
Q 007349 302 ITDKDWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 302 lt~kD~~dI~~al~~gvD~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IIA--KIEt~~av~NldeIl~~-sDGImIgRG 376 (607)
.+.++...+..+++.|+|+|=+. + ..+.....++++-+... +..+++ |+-++... .+++..+. +|.|.+-.
T Consensus 9 ~~~~~a~~~~~~l~~~v~~iev~~~l-~~~~g~~~i~~l~~~~~-~~~i~~d~k~~d~~~~-~~~~~~~~Gad~i~vh~- 84 (206)
T TIGR03128 9 LDIEEALELAEKVADYVDIIEIGTPL-IKNEGIEAVKEMKEAFP-DRKVLADLKTMDAGEY-EAEQAFAAGADIVTVLG- 84 (206)
T ss_pred CCHHHHHHHHHHcccCeeEEEeCCHH-HHHhCHHHHHHHHHHCC-CCEEEEEEeeccchHH-HHHHHHHcCCCEEEEec-
Confidence 34456666666668899988773 3 22222333433333222 233443 44444322 45565555 78887641
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
+.+ ....+++++.|+++|++++++ -..|.. -..++..+...|+|.+.+..
T Consensus 85 ----~~~----~~~~~~~i~~~~~~g~~~~~~---------~~~~~t-~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 85 ----VAD----DATIKGAVKAAKKHGKEVQVD---------LINVKD-KVKRAKELKELGADYIGVHT 134 (206)
T ss_pred ----cCC----HHHHHHHHHHHHHcCCEEEEE---------ecCCCC-hHHHHHHHHHcCCCEEEEcC
Confidence 111 123478899999999999873 111211 12344466667999887743
No 197
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=65.54 E-value=20 Score=37.74 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=44.6
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEe--ecChhhHhcHHHHHhh-ccEEEEcC
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAK--IEt~~av~NldeIl~~-sDGImIgR 375 (607)
..+++..+++.|+|+|.+..+ .++++.++.+.+.....+++++|- | -.+|+.++++. +|+|.++.
T Consensus 192 t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~AsGGI----~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 192 SLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAAAGGI----NIENAAAYAAAGADILVTSA 259 (272)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEEECCC----CHHHHHHHHHcCCcEEEECh
Confidence 346666778899999999655 556776666656543345555551 3 23788888888 99998763
No 198
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=65.53 E-value=10 Score=42.23 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=42.2
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 100 ~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
+-.+-+.+|+.-.+.+.++.|+++|+|+.=|..+||..+...++++.+|+
T Consensus 141 ~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~ 190 (404)
T PRK06843 141 KLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKT 190 (404)
T ss_pred CeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHh
Confidence 35577788887677899999999999999999999988777777777775
No 199
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=65.41 E-value=1.3e+02 Score=32.20 Aligned_cols=129 Identities=16% Similarity=0.183 Sum_probs=65.3
Q ss_pred CCCHHhHHHH--------HhhHhcCCcEEEecc-------------CCChhH-------------HHHHHHHHHhcCCCc
Q 007349 301 SITDKDWEDI--------KFGVDNQVDFYAVSF-------------VKDAKV-------------VHELKDYLKSCNADI 346 (607)
Q Consensus 301 ~lt~kD~~dI--------~~al~~gvD~I~~Sf-------------V~sa~d-------------v~~vr~~l~~~~~~i 346 (607)
.+|+.|++.+ +.+.+.|+|+|=+.. .+...| +.-++..-+..+++.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 5788888666 455678999986542 223222 111222223346788
Q ss_pred eEEEeecCh----hh--HhcHHHHHh----h-ccEEEEcCCCcccCC--CCCCHHHHHHHHH-HHHHHcCCCEEEEcccc
Q 007349 347 HVIVKIESA----DS--IPNLHSIIS----A-SDGAMVARGDLGAEL--PIEDVPLLQEDII-RRCRSMQKPVIVATNML 412 (607)
Q Consensus 347 ~IIAKIEt~----~a--v~NldeIl~----~-sDGImIgRGDLg~el--g~e~v~~~qk~II-~~c~~aGKPvivaTqmL 412 (607)
.|..||=-. .| .+..-++++ . .|.|=+..|...... +... ..+.... ...+...+||+..
T Consensus 223 ~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~--~~~~~~~~~ir~~~~iPVi~~---- 296 (336)
T cd02932 223 PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGP--GYQVPFAERIRQEAGIPVIAV---- 296 (336)
T ss_pred eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCc--cccHHHHHHHHhhCCCCEEEe----
Confidence 888886411 11 222222322 2 577777655433221 2111 1111121 2233458998873
Q ss_pred hhhhcCCCCChHhhhhHHHHHHhc-cceEEec
Q 007349 413 ESMIDHPTPTRAEVSDIAIAVREG-ADAVMLS 443 (607)
Q Consensus 413 eSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs 443 (607)
...-+.+ +...++..| +|+|++.
T Consensus 297 -----G~i~t~~---~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 297 -----GLITDPE---QAEAILESGRADLVALG 320 (336)
T ss_pred -----CCCCCHH---HHHHHHHcCCCCeehhh
Confidence 2233333 344677777 9999875
No 200
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=65.37 E-value=10 Score=40.91 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=38.0
Q ss_pred EecCCCCCCHHHHHHHHHhCC--cEEEEecCCCChHHHHHHHHHHHH
Q 007349 105 CTIGPSTSSREMIWKLAEEGM--NVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 105 ~TiGPss~~~e~l~~li~aGm--~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
+.+|.+.++.+.+.+|+++|+ |+.=|..+||..+..+++|+.||+
T Consensus 90 ~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~ 136 (326)
T PRK05458 90 ISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKK 136 (326)
T ss_pred EEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHh
Confidence 355555577799999999966 999999999998888999888885
No 201
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=65.28 E-value=1.8e+02 Score=30.73 Aligned_cols=193 Identities=12% Similarity=0.055 Sum_probs=99.5
Q ss_pred CCHHhHHHHHhh-HhcCCcEEEe-ccCCC-----hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEE
Q 007349 302 ITDKDWEDIKFG-VDNQVDFYAV-SFVKD-----AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMV 373 (607)
Q Consensus 302 lt~kD~~dI~~a-l~~gvD~I~~-SfV~s-----a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImI 373 (607)
++..++..|... .+.|++.|=+ ||+.. ..|-.++-..+... ....+.+..=+.++++. -++. .|.+.+
T Consensus 23 ~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~l~~~~~~ie~---A~~~g~~~v~i 98 (287)
T PRK05692 23 IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALTPNLKGLEA---ALAAGADEVAV 98 (287)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc-CCCeEEEEecCHHHHHH---HHHcCCCEEEE
Confidence 566777666544 4679999866 35432 11222222223221 23444444434444433 2333 555444
Q ss_pred c--CCCc----ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCC---ChHhhhhH-HHHHHhccceEEec
Q 007349 374 A--RGDL----GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP---TRAEVSDI-AIAVREGADAVMLS 443 (607)
Q Consensus 374 g--RGDL----g~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~P---trAEv~Dv-~nav~~G~D~vmLs 443 (607)
. -.|+ -.....++.....+.+++.++++|..+...=.+ ...+|.- +.+.+.+. -.+...|+|.|.|.
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~ 175 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVADVAERLFALGCYEISLG 175 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 3 2222 011122345556678999999999987421000 0112222 22334443 45567899999995
Q ss_pred ccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCC
Q 007349 444 GETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRT 512 (607)
Q Consensus 444 ~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~s 512 (607)
+|.=--.|.+.-+.+..+..+.-. .. +.-..-++. .+|.+-...|-+.|+..|=-|-.
T Consensus 176 -DT~G~~~P~~v~~lv~~l~~~~~~-~~-------i~~H~Hn~~--Gla~AN~laA~~aG~~~id~s~~ 233 (287)
T PRK05692 176 -DTIGVGTPGQVRAVLEAVLAEFPA-ER-------LAGHFHDTY--GQALANIYASLEEGITVFDASVG 233 (287)
T ss_pred -cccCccCHHHHHHHHHHHHHhCCC-Ce-------EEEEecCCC--CcHHHHHHHHHHhCCCEEEEEcc
Confidence 787778899999998888754311 11 111111222 23444455666777765544444
No 202
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=65.24 E-value=13 Score=40.49 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=42.0
Q ss_pred eEEEecCCCCCCHHHHHHHHHh--CCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 102 KIVCTIGPSTSSREMIWKLAEE--GMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 102 KIi~TiGPss~~~e~l~~li~a--Gm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
.+..++|-..++.|.+++|+++ |+|+.=|..|||..+...++|+.||+
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~ 147 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKARE 147 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHH
Confidence 4555889988999999999995 99999999999999888888887775
No 203
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=64.93 E-value=2.1e+02 Score=30.96 Aligned_cols=151 Identities=19% Similarity=0.242 Sum_probs=88.0
Q ss_pred CHHhHHHHHhhHh-cC-CcEEEec----cCCChhHHH----HHHHHHHh--cCCCceEEEeecChhhHhcHHHHHhh---
Q 007349 303 TDKDWEDIKFGVD-NQ-VDFYAVS----FVKDAKVVH----ELKDYLKS--CNADIHVIVKIESADSIPNLHSIISA--- 367 (607)
Q Consensus 303 t~kD~~dI~~al~-~g-vD~I~~S----fV~sa~dv~----~vr~~l~~--~~~~i~IIAKIEt~~av~NldeIl~~--- 367 (607)
++.+++|....++ .+ +|+|-+. .+....+++ .+.++++. ...+++|++|| ++ -++++++|++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl-~P-~~~di~~iA~~~~~ 184 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKL-AP-NITDIDEIAKAAEE 184 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEe-CC-CHHHHHHHHHHHHH
Confidence 4566777665553 34 7887653 222222232 22333322 12358999999 44 67777777765
Q ss_pred --ccEEEEc-------CCCcccCC--------CC---CCHHHHHHHHHHHHHHcC--CCEEEEcccchhhhcCCCCChHh
Q 007349 368 --SDGAMVA-------RGDLGAEL--------PI---EDVPLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAE 425 (607)
Q Consensus 368 --sDGImIg-------RGDLg~el--------g~---e~v~~~qk~II~~c~~aG--KPvivaTqmLeSM~~~~~PtrAE 425 (607)
+||+..- +.|+.... |+ .--+.+.+.+-+.++..+ .|+|- ....-|
T Consensus 185 ~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIG---------vGGI~s--- 252 (310)
T COG0167 185 AGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIG---------VGGIET--- 252 (310)
T ss_pred cCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEE---------ecCcCc---
Confidence 5998764 14554421 11 234566666777777777 88765 222222
Q ss_pred hhhHHHHHHhccceEEecccccCCCC-HHHHHHHHHHHHHHhhcC
Q 007349 426 VSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVALRTESS 469 (607)
Q Consensus 426 v~Dv~nav~~G~D~vmLs~ETa~G~y-PveaV~~m~~I~~~aE~~ 469 (607)
..|.+..++.|++.+.+- |+.=.+ |--+=++.+.+.+..|++
T Consensus 253 ~~DA~E~i~aGA~~vQv~--Tal~~~Gp~i~~~I~~~l~~~l~~~ 295 (310)
T COG0167 253 GEDALEFILAGASAVQVG--TALIYKGPGIVKEIIKGLARWLEEK 295 (310)
T ss_pred HHHHHHHHHcCCchheee--eeeeeeCchHHHHHHHHHHHHHHHc
Confidence 458899999999999885 666666 544444455555555543
No 204
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=64.91 E-value=1.1e+02 Score=31.20 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=74.4
Q ss_pred HHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHh---h-ccEEEEcCCCcccCCCCC
Q 007349 310 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS---A-SDGAMVARGDLGAELPIE 385 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~---~-sDGImIgRGDLg~elg~e 385 (607)
+..|++.++|+|-++. +-..+..+++.+. ....|=. ++.+++|..+ . +|.|.+|+--= .+....
T Consensus 74 ~dlA~~~~AdGVHlGq--~D~~~~~ar~~~~---~~~iIG~------S~h~~eea~~A~~~g~DYv~~Gpifp-T~tK~~ 141 (211)
T COG0352 74 VDLALAVGADGVHLGQ--DDMPLAEARELLG---PGLIIGL------STHDLEEALEAEELGADYVGLGPIFP-TSTKPD 141 (211)
T ss_pred HHHHHhCCCCEEEcCC--cccchHHHHHhcC---CCCEEEe------ecCCHHHHHHHHhcCCCEEEECCcCC-CCCCCC
Confidence 3456678999998873 3344555666662 3323322 3334444444 3 89999997311 111111
Q ss_pred CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 386 DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 386 ~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
.-+.--+.+-.......+|++.- -.-.|.+. ...+..|+|+|-+-.......-|..+++.+.+....
T Consensus 142 ~~~~G~~~l~~~~~~~~iP~vAI--------GGi~~~nv-----~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~ 208 (211)
T COG0352 142 APPLGLEGLREIRELVNIPVVAI--------GGINLENV-----PEVLEAGADGVAVVSAITSAADPAAAAKALRNALED 208 (211)
T ss_pred CCccCHHHHHHHHHhCCCCEEEE--------cCCCHHHH-----HHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHh
Confidence 10111111112233334997652 33344443 377888999998877777788899999988877654
No 205
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=64.78 E-value=1.2e+02 Score=31.59 Aligned_cols=57 Identities=21% Similarity=0.295 Sum_probs=41.8
Q ss_pred cCCCEEEEcccchhhhcCCCC-ChHh-hhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 401 MQKPVIVATNMLESMIDHPTP-TRAE-VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 401 aGKPvivaTqmLeSM~~~~~P-trAE-v~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
..+||..+ -...+ +..+ ...+..++..|++++......-....|.++++.|..+.++
T Consensus 195 ~~ipV~a~--------GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~ 253 (267)
T PRK07226 195 CPVPVVIA--------GGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHE 253 (267)
T ss_pred CCCCEEEE--------eCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhC
Confidence 46898763 22332 3334 4446677899999999988888888899999999988754
No 206
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=64.57 E-value=1.2e+02 Score=32.07 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=90.8
Q ss_pred HHHHHHhcCCCceEEE---eecC---hhhHhcHHHHHhh-----ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCC
Q 007349 335 LKDYLKSCNADIHVIV---KIES---ADSIPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQK 403 (607)
Q Consensus 335 vr~~l~~~~~~i~IIA---KIEt---~~av~NldeIl~~-----sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGK 403 (607)
+.+++.....++.++| .+|. .++++|++.+++. +|+++.-+|=+..--+ -....+
T Consensus 13 l~rif~~~tG~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~~--------------~y~~dv 78 (265)
T COG1830 13 LARIFNRGTGRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMTPGIARSVHR--------------GYAHDV 78 (265)
T ss_pred HHHHhcCCCCCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEecHhHHhhcCc--------------cccCCc
Confidence 3344433234556666 4555 3578888887765 5888876553321111 123467
Q ss_pred CEEEEcccchhhhcCCCCChHh--hhhHHHHHHhccceEE----ecccccCCCCHHHHHHHHHHHHHHhhcCCCCC--CC
Q 007349 404 PVIVATNMLESMIDHPTPTRAE--VSDIAIAVREGADAVM----LSGETAHGKFPLKAVKVMHTVALRTESSLPVS--IT 475 (607)
Q Consensus 404 PvivaTqmLeSM~~~~~PtrAE--v~Dv~nav~~G~D~vm----Ls~ETa~G~yPveaV~~m~~I~~~aE~~~~~~--~~ 475 (607)
|.++ .|.++..-..++.-+ +..+=.++..|+|++- +.+|+. -+.++.+.++...+.++--.. ..
T Consensus 79 pliv---kl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v~~~ 150 (265)
T COG1830 79 PLIV---KLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPLVAWA 150 (265)
T ss_pred CEEE---EeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceEEEE
Confidence 8887 566663322222333 6677788999999976 444444 688888888888888753111 01
Q ss_pred CCCccccCCC---ChhHHHHHHHHHHHhhcCCCEEE--EcCChHHHHHHHhcC
Q 007349 476 PPTQFSAHKS---HMGDMFAFHSTTMANTLNTPIIV--FTRTGSMAVILSHYR 523 (607)
Q Consensus 476 ~~~~~~~~~~---~~~~~ia~~a~~~A~~l~a~Iiv--~T~sG~tA~~is~~R 523 (607)
|+.-. ..+. ...+.+++ |.++|.+++|-||= +|.+-.+=+.+-++-
T Consensus 151 YpRg~-~~~~~~~~d~~~v~~-aaRlaaelGADIiK~~ytg~~e~F~~vv~~~ 201 (265)
T COG1830 151 YPRGP-AIKDEYHRDADLVGY-AARLAAELGADIIKTKYTGDPESFRRVVAAC 201 (265)
T ss_pred eccCC-cccccccccHHHHHH-HHHHHHHhcCCeEeecCCCChHHHHHHHHhC
Confidence 21111 1111 23455544 56788899997774 444333333333333
No 207
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=64.23 E-value=1.5e+02 Score=31.28 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=61.5
Q ss_pred HHHHhhHhcCCcEEEeccCCCh--------hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEc-CCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDA--------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVA-RGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa--------~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIg-RGD 377 (607)
+.++.+.+.|+|.|.+.. ..+ +.+.++++.+ ..++++|.- ...+......+. +|+|.+. +|
T Consensus 133 ~~i~~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g- 203 (299)
T cd02809 133 DLLRRAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG- 203 (299)
T ss_pred HHHHHHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC-
Confidence 455666778999887643 222 3444444432 367888841 223333334444 8999884 22
Q ss_pred cccCC--CCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 378 LGAEL--PIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 378 Lg~el--g~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
|..+ +.. ......++.+.+. -..|+|.+ ...-+ -.|+..++..|+|++|+..
T Consensus 204 -G~~~~~g~~-~~~~l~~i~~~~~-~~ipvia~---------GGI~~---~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 204 -GRQLDGAPA-TIDALPEIVAAVG-GRIEVLLD---------GGIRR---GTDVLKALALGADAVLIGR 257 (299)
T ss_pred -CCCCCCCcC-HHHHHHHHHHHhc-CCCeEEEe---------CCCCC---HHHHHHHHHcCCCEEEEcH
Confidence 2222 111 1222222222221 14888773 33333 3578899999999999864
No 208
>PRK07334 threonine dehydratase; Provisional
Probab=64.15 E-value=94 Score=34.26 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+++- .|..+ .-......-..|++.++.. ...-++++...+++.+.. .++.
T Consensus 85 alA~~a~~~G~~~~iv---------~p~~~--~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~~-~~~~ 146 (403)
T PRK07334 85 GVAYHAQRLGIPATIV---------MPRFT--PTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEEG-LTFV 146 (403)
T ss_pred HHHHHHHHcCCCEEEE---------ECCCC--CHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhcC-CEec
Confidence 4566899999999873 22222 2223456677899998652 345678777777755422 2211
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHHh----cCCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSH----YRPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is~----~RP~~PIIAvT~d~ 535 (607)
. .|.+ ....+.-..-+.++.++++. .||+..-+|.++--+++ ++|...|+++-+..
T Consensus 147 ~-~~~~------~~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~ 208 (403)
T PRK07334 147 H-PYDD------PAVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTEL 208 (403)
T ss_pred C-CCCC------HHHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1 1110 11223334455677777764 68888888887766665 48999999999964
No 209
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=64.08 E-value=1.6e+02 Score=30.79 Aligned_cols=86 Identities=29% Similarity=0.325 Sum_probs=56.9
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccccc
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 447 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa 447 (607)
+|.||.--...|...|+.+ +...+.|.+. .+.|||+ ....-|. +|++.++..|+|++++.+--+
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~---~~vpVI~---------egGI~tp---eda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLN-PYNLRIIIER---ADVPVIV---------DAGIGTP---SDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---CCCcEEE---------eCCCCCH---HHHHHHHHcCCCEEEEChHhc
Confidence 4555542123333445545 5555555443 5789988 4444443 467899999999999998888
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC
Q 007349 448 HGKFPLKAVKVMHTVALRTESS 469 (607)
Q Consensus 448 ~G~yPveaV~~m~~I~~~aE~~ 469 (607)
.++.|..-.+.+..-...-...
T Consensus 209 ~a~dP~~ma~af~~Av~aGr~a 230 (248)
T cd04728 209 KAKDPVAMARAFKLAVEAGRLA 230 (248)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 8889998888887776555433
No 210
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=64.01 E-value=26 Score=37.02 Aligned_cols=67 Identities=10% Similarity=0.171 Sum_probs=45.1
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcC
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgR 375 (607)
..+++..+++.|+|+|.+-.. +.+++.++.+++.....++.+.| +----.+|+.++++. +|+|.+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieA--sGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEA--SGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEE--ECCCCHHHHHHHHHcCCCEEEeCh
Confidence 456777889999999998654 77777777666544344554444 111124567777776 89999984
No 211
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=63.94 E-value=14 Score=40.18 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=42.6
Q ss_pred eEEEecCCCCCCHHHHHHHHHhC--CcEEEEecCCCChHHHHHHHHHHHH
Q 007349 102 KIVCTIGPSTSSREMIWKLAEEG--MNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 102 KIi~TiGPss~~~e~l~~li~aG--m~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
.+.+++|-...+.|.+++|+++| .|+.=|..|||..+...++|+.||+
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~ 146 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVRE 146 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHh
Confidence 35558999999999999999996 9999999999999888888888886
No 212
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=63.85 E-value=1.9e+02 Score=30.00 Aligned_cols=155 Identities=13% Similarity=0.062 Sum_probs=92.7
Q ss_pred CCCHHhHHHHHhh-HhcCCcEEEec-cCCChhHHHHHHHHHHhcCCCceEEEee-cChhhHhcHHHHHhh-----ccEEE
Q 007349 301 SITDKDWEDIKFG-VDNQVDFYAVS-FVKDAKVVHELKDYLKSCNADIHVIVKI-ESADSIPNLHSIISA-----SDGAM 372 (607)
Q Consensus 301 ~lt~kD~~dI~~a-l~~gvD~I~~S-fV~sa~dv~~vr~~l~~~~~~i~IIAKI-Et~~av~NldeIl~~-----sDGIm 372 (607)
.++..++..|... .+.|++.|=+. |+.++++...++.+. ....+..+.+.+ -+.++++ ..++. .|.|-
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~-~~~~~~~~~~l~r~~~~~v~---~a~~~~~~~~~~~i~ 91 (268)
T cd07940 16 SLTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIA-REVLNAEICGLARAVKKDID---AAAEALKPAKVDRIH 91 (268)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HhCCCCEEEEEccCCHhhHH---HHHHhCCCCCCCEEE
Confidence 4566777666444 46799998764 445777876555543 333456666655 2334443 33332 45555
Q ss_pred Ec--CCCcc----cCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHH-HHhccceEEeccc
Q 007349 373 VA--RGDLG----AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSGE 445 (607)
Q Consensus 373 Ig--RGDLg----~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~E 445 (607)
+- -.|.- .....++.....+..++.+++.|..+.+.. ...+.-+.+.+.+++.. ...|+|.+.|. +
T Consensus 92 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-D 164 (268)
T cd07940 92 TFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA------EDATRTDLDFLIEVVEAAIEAGATTINIP-D 164 (268)
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee------ecCCCCCHHHHHHHHHHHHHcCCCEEEEC-C
Confidence 42 11111 011123344555678889999998776521 12333445555555544 55699999995 8
Q ss_pred ccCCCCHHHHHHHHHHHHHHh
Q 007349 446 TAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 446 Ta~G~yPveaV~~m~~I~~~a 466 (607)
|.=--+|.+.-+.++.+-...
T Consensus 165 T~G~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 165 TVGYLTPEEFGELIKKLKENV 185 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHhC
Confidence 888889999998888886544
No 213
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.67 E-value=29 Score=35.03 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 389 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 389 ~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.....+++.|+++|.|++= ..-| .+++..+...|+|.+=+=
T Consensus 84 ~~~~~vi~~a~~~~i~~iP-----------G~~T---ptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 84 GTTQELLAAANDSDVPLLP-----------GAAT---PSEVMALREEGYTVLKFF 124 (201)
T ss_pred CCCHHHHHHHHHcCCCEeC-----------CCCC---HHHHHHHHHCCCCEEEEC
Confidence 3457899999999999863 1122 345779999999998874
No 214
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=63.62 E-value=1.1e+02 Score=32.77 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=74.4
Q ss_pred CCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHH-cCC
Q 007349 326 VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS-MQK 403 (607)
Q Consensus 326 V~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~-aGK 403 (607)
.+++++|.++++.. +++||+++---- +...+++.++ +|.| | +.+-+-+ + ..++...+. .+.
T Consensus 51 ~~~~~~I~~Ik~~V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI-----D-aT~r~rP-~----~~~~~~iK~~~~~ 113 (283)
T cd04727 51 MADPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDMI-----D-ESEVLTP-A----DEEHHIDKHKFKV 113 (283)
T ss_pred cCCHHHHHHHHHhC-----CCCeEEeeehhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-H----HHHHHHHHHHcCC
Confidence 35666666666554 788998774222 7777777776 7887 4 3232222 2 344444444 377
Q ss_pred CEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 007349 404 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 404 PvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 470 (607)
|++. .. +.+.+.-+++..|+|+|=-+.|--.| +-.|+|+-+++|-.++....
T Consensus 114 l~MA-----------D~---stleEal~a~~~Gad~I~TTl~gyT~-~~~~~~~~~~~i~~~i~~~~ 165 (283)
T cd04727 114 PFVC-----------GA---RNLGEALRRISEGAAMIRTKGEAGTG-NVVEAVRHMRAVNGEIRKLQ 165 (283)
T ss_pred cEEc-----------cC---CCHHHHHHHHHCCCCEEEecCCCCCC-cHHHHHHHHHHHHHHHHHHh
Confidence 7654 11 23556779999999999888775555 67899999999998888543
No 215
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=63.61 E-value=1.1e+02 Score=32.84 Aligned_cols=132 Identities=21% Similarity=0.272 Sum_probs=83.1
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHH--------------------------------------------HHhcC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDY--------------------------------------------LKSCN 343 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~--------------------------------------------l~~~~ 343 (607)
..|..+++.|+|++.+. ++|+.+++++ +...|
T Consensus 19 ~~it~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~G 94 (376)
T COG1465 19 KRITAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDRG 94 (376)
T ss_pred HHHHHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhcC
Confidence 56678899999988764 4666665543 11234
Q ss_pred CCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCCh
Q 007349 344 ADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR 423 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~Ptr 423 (607)
........|.+++--+-..++...+|.+++---|..+ +|+|++.. .- .+.+--++| ..-+-
T Consensus 95 ~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA-------~l-~~e~~kliA----------~V~sa 155 (376)
T COG1465 95 HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIA-------DL-QHEKVKLIA----------GVKSA 155 (376)
T ss_pred cceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHH-------Hh-hccceEEEE----------EeccH
Confidence 4566788888887777777777778887774334432 45444321 11 111222332 13344
Q ss_pred HhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhc
Q 007349 424 AEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTES 468 (607)
Q Consensus 424 AEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~ 468 (607)
.|..-.+..+..|+|+++|.++ .| +-++-...+..++|+
T Consensus 156 eEA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~ 194 (376)
T COG1465 156 EEARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAES 194 (376)
T ss_pred HHHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhcc
Confidence 5555667889999999999755 44 667777888888884
No 216
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=63.35 E-value=45 Score=34.86 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=56.0
Q ss_pred HHHHhhHhcCCcEEEecc------CCChhHHHH-HHHHHHhcCCCceEEEeec---ChhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~Sf------V~sa~dv~~-vr~~l~~~~~~i~IIAKIE---t~~av~NldeIl~~-sDGImIgRG 376 (607)
+.+++.++.|+++|.+.- .=+.++-.+ ++...+....++.|++-+= +.++++.+...-+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP 105 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTP 105 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCC
Confidence 556788899999987531 112222222 3334444556788888873 34455544444444 799999765
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
.+.. .+-+.+...-++| |.+.+.|+++.
T Consensus 106 ~~~~-~~~~~i~~~~~~i---a~~~~~pv~lY 133 (292)
T PRK03170 106 YYNK-PTQEGLYQHFKAI---AEATDLPIILY 133 (292)
T ss_pred cCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 5421 1223344444444 44558999884
No 217
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=62.81 E-value=86 Score=33.34 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=62.2
Q ss_pred HHHHhhHhcCCcEEEec------cCCChhHHHHH-HHHHHhcCCCceEEEeec---ChhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~S------fV~sa~dv~~v-r~~l~~~~~~i~IIAKIE---t~~av~NldeIl~~-sDGImIgRG 376 (607)
+.++|-++.|+|+|.+. +--|.++-.++ +...+..+.++++|+-+= |.++++....--+. +||+|+-+-
T Consensus 29 ~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45578889999988763 22344444443 444556678899999773 44555444444444 899999643
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE 425 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE 425 (607)
.+-- .+.+.+...-+.| |.+.+.|+|+. +.|..|...
T Consensus 109 yY~k-~~~~gl~~hf~~i---a~a~~lPvilY--------N~P~~tg~~ 145 (299)
T COG0329 109 YYNK-PSQEGLYAHFKAI---AEAVDLPVILY--------NIPSRTGVD 145 (299)
T ss_pred CCcC-CChHHHHHHHHHH---HHhcCCCEEEE--------eCccccCCC
Confidence 3211 1113344444444 55559999984 556666655
No 218
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=62.80 E-value=70 Score=33.59 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=58.4
Q ss_pred HHHHhhHh-cCCcEEEecc------CCChhHHHH-HHHHHHhcCCCceEEEeec---ChhhHhcHHHHHhh-ccEEEEcC
Q 007349 308 EDIKFGVD-NQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 308 ~dI~~al~-~gvD~I~~Sf------V~sa~dv~~-vr~~l~~~~~~i~IIAKIE---t~~av~NldeIl~~-sDGImIgR 375 (607)
+.+++.++ .|+++|.+.- .=+.++-.+ ++..++..+.++.||+.+- |.++++.....-+. +|++|+-+
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 55678889 9999987642 122233333 3344555667799999984 45555555555554 89999986
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 376 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 376 GDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
.... +. .-..+.+..-..|.+.+.|+++.
T Consensus 108 P~y~---~~-~~~~l~~~f~~va~a~~lPv~iY 136 (293)
T PRK04147 108 PFYY---PF-SFEEICDYYREIIDSADNPMIVY 136 (293)
T ss_pred CcCC---CC-CHHHHHHHHHHHHHhCCCCEEEE
Confidence 5431 11 11233334444455678999984
No 219
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=62.78 E-value=50 Score=34.07 Aligned_cols=148 Identities=21% Similarity=0.191 Sum_probs=83.7
Q ss_pred CCCCHHhH-HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEee-----cChhhHhcHHHHHhh------
Q 007349 300 PSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKI-----ESADSIPNLHSIISA------ 367 (607)
Q Consensus 300 p~lt~kD~-~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKI-----Et~~av~NldeIl~~------ 367 (607)
|..|++|. +.+..|.++|+..|.+. +--+...+++++... ...|-.=| -+..++.-.+...+.
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~A~~~l~g~~-~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GAdE 93 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCVN----PSYVPLAKEALKGST-VVRVCTVIGFPLGANTTAVKAAEAREAIENGADE 93 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEEC----cchHHHHHHHhccCC-CeEEEEecCCCCCCChHHHHHHHHHHHHHcCCCe
Confidence 77888887 44578899998877764 445666788886531 22222222 122222222222222
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEEcccchhhhcCCCCChHhhhhHH-HHHHhccceEEeccc
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIA-IAVREGADAVMLSGE 445 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~a-GKPvivaTqmLeSM~~~~~PtrAEv~Dv~-nav~~G~D~vmLs~E 445 (607)
.|.++ ..|-|- +=.++.|..-.+.+.++|..+ -..||+- .+.-|..|....+ -++..|+|+|=-|.-
T Consensus 94 iDmVi-nig~~k-~g~~~~V~~eI~~v~~a~~~~~~lKVIlE---------t~~Lt~ee~~~A~~i~~~aGAdFVKTSTG 162 (228)
T COG0274 94 IDMVI-NIGALK-SGNWEAVEREIRAVVEACADAVVLKVILE---------TGLLTDEEKRKACEIAIEAGADFVKTSTG 162 (228)
T ss_pred eeeee-eHHHHh-cCCHHHHHHHHHHHHHHhCCCceEEEEEe---------ccccCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 34443 222221 112244555556666666653 3346774 4455566644433 456789999876654
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 007349 446 TAHGKFPLKAVKVMHTVA 463 (607)
Q Consensus 446 Ta~G~yPveaV~~m~~I~ 463 (607)
-+-|.--+|.|+.|.+++
T Consensus 163 f~~~gAT~edv~lM~~~v 180 (228)
T COG0274 163 FSAGGATVEDVKLMKETV 180 (228)
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 445556689999999987
No 220
>PRK06815 hypothetical protein; Provisional
Probab=62.28 E-value=79 Score=33.58 Aligned_cols=118 Identities=13% Similarity=0.131 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+. -| ..+.-..+...-..|++.+...++ ..++.+...+++.+-. .++.
T Consensus 82 alA~~a~~~G~~~~i~---------~p--~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~~-~~~~ 143 (317)
T PRK06815 82 GVALAAKLAGIPVTVY---------AP--EQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQG-KVYI 143 (317)
T ss_pred HHHHHHHHhCCCEEEE---------EC--CCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhcC-CEEe
Confidence 3667899999999773 12 222223344566789999888643 3466666655544321 1111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
..+.+ ....+....-+.++.++++. .||+..-+|.++--++ .+.|...|+++.+..
T Consensus 144 -~~~~~------~~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~ 205 (317)
T PRK06815 144 -SPYND------PQVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPAN 205 (317)
T ss_pred -cCCCC------hhhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 11111 01122333456678888764 6888888888765444 456999999999975
No 221
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=62.17 E-value=60 Score=33.91 Aligned_cols=91 Identities=14% Similarity=0.180 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 329 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 329 a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
.+.+..++++.++.| +.+++-+.....++-+. +.+|.+-||-+++. +-.+++++.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~G--l~~~t~~~d~~~~~~l~---~~~d~lkI~s~~~~-----------n~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEHG--LPVVTEVMDPRDVEIVA---EYADILQIGARNMQ-----------NFELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHhC--CCEEEeeCChhhHHHHH---hhCCEEEECccccc-----------CHHHHHHHhcCCCcEEEe
Confidence 455666777776644 67888777776665554 45799999987663 234778888999999996
Q ss_pred cccchhhhcCCCCChHhhhhHHHHHH-hccceEEec
Q 007349 409 TNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLS 443 (607)
Q Consensus 409 TqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs 443 (607)
|.|. ++..|+...+..+. .|.+-++|.
T Consensus 139 ~G~~--------~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGMG--------NTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCcEEEE
Confidence 5433 46688888877776 577556664
No 222
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=61.93 E-value=40 Score=35.86 Aligned_cols=117 Identities=18% Similarity=0.286 Sum_probs=73.4
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCE-EEEcccch---hhhcC
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV-IVATNMLE---SMIDH 418 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPv-ivaTqmLe---SM~~~ 418 (607)
.+++|...+.+..-++.+.+-++. .+.||+. - -.+|+++=...-+++++.|+++|.+| .=-..+-. .....
T Consensus 73 ~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D---g-S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~ 148 (283)
T PRK07998 73 MDVPVSLHLDHGKTFEDVKQAVRAGFTSVMID---G-AALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSE 148 (283)
T ss_pred CCCCEEEECcCCCCHHHHHHHHHcCCCEEEEe---C-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccc
Confidence 357788888777655555444444 7899994 2 34677766677899999999999998 22111110 00000
Q ss_pred CCCChHhhhhHHHHHH-hccceEEecccccCCCC--HHHHHHHHHHHHHH
Q 007349 419 PTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF--PLKAVKVMHTVALR 465 (607)
Q Consensus 419 ~~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~y--PveaV~~m~~I~~~ 465 (607)
.-...+..+...++. -|+|++-.+--|+.|.| |---.+.|.+|...
T Consensus 149 -~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~ 197 (283)
T PRK07998 149 -ADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEV 197 (283)
T ss_pred -ccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhh
Confidence 000112334456664 69999999999999999 44345666666544
No 223
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=61.74 E-value=47 Score=34.47 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=57.2
Q ss_pred HHHHhhHhcCCcEEEecc------CCChhHHHHHHH-HHHhcCCCceEEEeecC---hhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVSF------VKDAKVVHELKD-YLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~Sf------V~sa~dv~~vr~-~l~~~~~~i~IIAKIEt---~~av~NldeIl~~-sDGImIgRG 376 (607)
+.+++.++.|++++.+.- --+.++-.++-+ ..+..+.++.|++-+-. .++++.+....+. +|++|+.+-
T Consensus 25 ~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P 104 (284)
T cd00950 25 RLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTP 104 (284)
T ss_pred HHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccc
Confidence 566788899999987651 122333333322 33444567889998853 3455544444444 899999865
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
...- .+-+.+...-++|++ +.+.|+++.
T Consensus 105 ~~~~-~~~~~l~~~~~~ia~---~~~~pi~lY 132 (284)
T cd00950 105 YYNK-PSQEGLYAHFKAIAE---ATDLPVILY 132 (284)
T ss_pred ccCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 4321 122344444455544 468999984
No 224
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=61.57 E-value=1.4e+02 Score=31.40 Aligned_cols=131 Identities=18% Similarity=0.175 Sum_probs=75.6
Q ss_pred CCCCHHhHHHHHhhHhcCCcEEEeccCC-------------ChhHHH-HHHHHHHhcCCCceEEEeec------Ch-hhH
Q 007349 300 PSITDKDWEDIKFGVDNQVDFYAVSFVK-------------DAKVVH-ELKDYLKSCNADIHVIVKIE------SA-DSI 358 (607)
Q Consensus 300 p~lt~kD~~dI~~al~~gvD~I~~SfV~-------------sa~dv~-~vr~~l~~~~~~i~IIAKIE------t~-~av 358 (607)
-.++-+|.--.+.+-+.|+|.|.+..-- +.++.. .++. +.+.-+...|++=++ ++ +++
T Consensus 18 ~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~-V~r~~~~p~vvaD~pfg~y~~~~~~av 96 (264)
T PRK00311 18 VMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKA-VARGAPRALVVADMPFGSYQASPEQAL 96 (264)
T ss_pred EEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHH-HHhcCCCCcEEEeCCCCCccCCHHHHH
Confidence 3456678776677778899988754110 111111 1222 222223446778665 22 467
Q ss_pred hcHHHHHh-h-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE----EEcccc---hhh-hcCCCCChHh--h
Q 007349 359 PNLHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNML---ESM-IDHPTPTRAE--V 426 (607)
Q Consensus 359 ~NldeIl~-~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi----vaTqmL---eSM-~~~~~PtrAE--v 426 (607)
+|.-.+++ . ++||.|-=| ..+...|+++.++|+||+ +--|-- ..+ +...+..+++ +
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i 164 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLL 164 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecCCHHHHHHHH
Confidence 88888887 3 899998433 245677888889999995 222211 111 1122222233 5
Q ss_pred hhHHHHHHhccceEEec
Q 007349 427 SDIAIAVREGADAVMLS 443 (607)
Q Consensus 427 ~Dv~nav~~G~D~vmLs 443 (607)
.+.-.+...|+|+++|-
T Consensus 165 ~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 165 EDAKALEEAGAFALVLE 181 (264)
T ss_pred HHHHHHHHCCCCEEEEc
Confidence 55666668899999984
No 225
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=61.34 E-value=11 Score=42.88 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=38.0
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 105 CTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 105 ~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
+.+|..-++.+.++.|+++|+++.=++.+||......+.|+.+|+
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~ 278 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKS 278 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHh
Confidence 477877677899999999999999999999987776667777765
No 226
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=61.28 E-value=93 Score=34.08 Aligned_cols=93 Identities=24% Similarity=0.294 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEc-CCCcccCCCCCCHHHHHHHHHHHHHHc--CC
Q 007349 328 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSM--QK 403 (607)
Q Consensus 328 sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIg-RGDLg~elg~e~v~~~qk~II~~c~~a--GK 403 (607)
+.+++..+++.. +.+|++|.. ...+......+. +|+|.+. -| |..+. ..+.....+.+.+.+. ..
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv--~~~~dA~~a~~~G~d~I~vsnhG--Gr~ld--~~~~~~~~l~~i~~a~~~~i 277 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGI--QSPEDADVAINAGADGIWVSNHG--GRQLD--GGPASFDSLPEIAEAVNHRV 277 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecC--CCHHHHHHHHHcCCCEEEEeCCC--CccCC--CCchHHHHHHHHHHHhCCCC
Confidence 567777777654 468899932 122233333333 8999984 11 22221 1111122222233333 47
Q ss_pred CEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 404 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 404 PvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
|+|.. ...-+ -.|++.++..|+|++|+.
T Consensus 278 ~vi~d---------GGIr~---g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 278 PIIFD---------SGVRR---GEHVFKALASGADAVAVG 305 (351)
T ss_pred eEEEE---------CCCCC---HHHHHHHHHcCCCEEEEC
Confidence 88873 33322 468999999999999985
No 227
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=61.01 E-value=15 Score=42.04 Aligned_cols=50 Identities=28% Similarity=0.425 Sum_probs=42.2
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 100 ~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
|-.+=+.+|+.-+..|-+++|+++|+|+.=+..+||......++++.||+
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~ 285 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKK 285 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 44556678988888999999999999999999999988766677777775
No 228
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=60.91 E-value=2.2e+02 Score=29.78 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=91.2
Q ss_pred CCCccccCCCccCCCCCCHHhHHHH-HhhHhcCCcEEEeccC-CChhHHHHHHHHHHhcCCCceEEEe-ecChhhHhcHH
Q 007349 286 SRRHLNVRGKSANLPSITDKDWEDI-KFGVDNQVDFYAVSFV-KDAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLH 362 (607)
Q Consensus 286 s~Kgvn~p~~~~~lp~lt~kD~~dI-~~al~~gvD~I~~SfV-~sa~dv~~vr~~l~~~~~~i~IIAK-IEt~~av~Nld 362 (607)
-|-|...|+.. ++..++..| +.-.+.|+|.|=+.+- .++++...++. +...+....+.+- .-+.++++.
T Consensus 8 LRDG~Q~~~~~-----~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~-l~~~~~~~~v~~~~r~~~~di~~-- 79 (262)
T cd07948 8 LREGEQFANAF-----FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEA-IAKLGLKAKILTHIRCHMDDARI-- 79 (262)
T ss_pred CCCcCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-HHhCCCCCcEEEEecCCHHHHHH--
Confidence 34455566543 466676555 4445789999866432 34444444433 3333443444433 233333333
Q ss_pred HHHhh-ccEEEEc--CCCccc----CCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHh
Q 007349 363 SIISA-SDGAMVA--RGDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE 435 (607)
Q Consensus 363 eIl~~-sDGImIg--RGDLg~----elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~ 435 (607)
.++. .|.|.+- -.|.-. ....++.....+++++.+++.|..+.+.- .++ .. .| ...+.+.+..+.+
T Consensus 80 -a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda--~r-~~-~~~l~~~~~~~~~ 152 (262)
T cd07948 80 -AVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDS--FR-SD-LVDLLRVYRAVDK 152 (262)
T ss_pred -HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--Eee--CC-CC-HHHHHHHHHHHHH
Confidence 3333 5655542 111100 12234566667788999999998876631 111 11 11 3446666665544
Q ss_pred -ccceEEecccccCCCCHHHHHHHHHHHHH
Q 007349 436 -GADAVMLSGETAHGKFPLKAVKVMHTVAL 464 (607)
Q Consensus 436 -G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 464 (607)
|+|.+.|. +|.=..+|.+.-+++..+-.
T Consensus 153 ~g~~~i~l~-Dt~G~~~P~~v~~~~~~~~~ 181 (262)
T cd07948 153 LGVNRVGIA-DTVGIATPRQVYELVRTLRG 181 (262)
T ss_pred cCCCEEEEC-CcCCCCCHHHHHHHHHHHHH
Confidence 99999885 88888899988888877754
No 229
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=60.87 E-value=1.1e+02 Score=33.34 Aligned_cols=119 Identities=10% Similarity=0.101 Sum_probs=72.7
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+. - |.......+...-..|++.++.. ...-++.+...+++.+-. .++.
T Consensus 62 alA~~a~~~G~~~~iv---------~--p~~~~~~k~~~~~~~GA~V~~~~------~~~~~a~~~a~~~~~~~~-~~~~ 123 (380)
T TIGR01127 62 GVAYAAKKFGIKAVIV---------M--PESAPPSKVKATKSYGAEVILHG------DDYDEAYAFATSLAEEEG-RVFV 123 (380)
T ss_pred HHHHHHHHcCCCEEEE---------E--cCCCcHHHHHHHHHCCCEEEEEC------CCHHHHHHHHHHHHHhcC-CEec
Confidence 4566799999998773 1 22222234556777899987642 335577777777665422 2211
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHHh----cCCCCeEEEEeCCHH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSH----YRPSSTIFAFTNQER 536 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is~----~RP~~PIIAvT~d~~ 536 (607)
. .|.+. ...+.-..-+.++.++++. .||+..-+|.++.-+++ ++|.+.||++-+...
T Consensus 124 ~-~~~~~------~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 124 H-PFDDE------FVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred C-CCCCh------hhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1 12110 1112223345577777764 78888889988765554 469999999999654
No 230
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=60.78 E-value=3.6 Score=44.15 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=14.2
Q ss_pred hhHhcCCcEEEeccCCChhHH
Q 007349 312 FGVDNQVDFYAVSFVKDAKVV 332 (607)
Q Consensus 312 ~al~~gvD~I~~SfV~sa~dv 332 (607)
.+.+.|+++|. |||.+-.|+
T Consensus 164 ~aa~AGa~~IS-PfVgRi~d~ 183 (313)
T cd00957 164 ACAEAGVTLIS-PFVGRILDW 183 (313)
T ss_pred HHHHcCCCEEE-eecchHHHh
Confidence 34567888765 798877664
No 231
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=60.73 E-value=20 Score=34.88 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcCCC-CeEEEEeCC
Q 007349 488 GDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYRPS-STIFAFTNQ 534 (607)
Q Consensus 488 ~~~ia~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~RP~-~PIIAvT~d 534 (607)
.+..-..|++-|.+++. .|+|-+.||.||++++-+-|. ..|+.+|+.
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh 60 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHH 60 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEee
Confidence 34455667888889999 899999999999999999997 899999983
No 232
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=60.69 E-value=26 Score=36.62 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=46.2
Q ss_pred hcCCcEEEeccCCC--hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcC-----CCcccCCCCCCH
Q 007349 315 DNQVDFYAVSFVKD--AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVAR-----GDLGAELPIEDV 387 (607)
Q Consensus 315 ~~gvD~I~~SfV~s--a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgR-----GDLg~elg~e~v 387 (607)
..++|.|.+|--.+ +.+...+++.-+... ++|+ |=|=--.+|+.++++.+||++||- |+..-.+..+++
T Consensus 170 ~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~--~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~VD~~Rv 245 (254)
T PF03437_consen 170 RGGADAVIVTGKATGEPPDPEKLKRVREAVP--VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPVDPERV 245 (254)
T ss_pred hcCCCEEEECCcccCCCCCHHHHHHHHhcCC--CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcCCHHHH
Confidence 46899999997654 224444333322222 5555 345555689999999999999993 455555554554
Q ss_pred HHHHH
Q 007349 388 PLLQE 392 (607)
Q Consensus 388 ~~~qk 392 (607)
..+.+
T Consensus 246 ~~fm~ 250 (254)
T PF03437_consen 246 RRFME 250 (254)
T ss_pred HHHHH
Confidence 44433
No 233
>PRK06382 threonine dehydratase; Provisional
Probab=60.14 E-value=1.2e+02 Score=33.40 Aligned_cols=118 Identities=10% Similarity=0.054 Sum_probs=72.5
Q ss_pred HHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007349 394 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 473 (607)
Q Consensus 394 II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 473 (607)
+..+|+..|.++.+. .| ..+-...+...-..|++.+... ...-++.+...+++.+- ..++..
T Consensus 88 ~A~aa~~~G~~~~iv---------mp--~~~~~~k~~~~~~~GA~Vv~~~------~~~~~a~~~a~~la~~~-~~~~v~ 149 (406)
T PRK06382 88 VAYAASINGIDAKIV---------MP--EYTIPQKVNAVEAYGAHVILTG------RDYDEAHRYADKIAMDE-NRTFIE 149 (406)
T ss_pred HHHHHHHcCCCEEEE---------Ec--CCCHHHHHHHHHHcCCEEEEEC------CCHHHHHHHHHHHHHhc-CCEecC
Confidence 567899999998773 22 2222223444567899876542 23457777776665542 222111
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHHh----cCCCCeEEEEeCCHH
Q 007349 474 ITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSH----YRPSSTIFAFTNQER 536 (607)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is~----~RP~~PIIAvT~d~~ 536 (607)
.|.+ ....+.-..-+.++.++++. .||+..-+|.++.-+++ ..|.+.||++-+...
T Consensus 150 -~~~~------~~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~ 211 (406)
T PRK06382 150 -AFND------RWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELS 211 (406)
T ss_pred -ccCC------hHHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1111 11233334456678888865 68888889988766665 489999999999643
No 234
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=59.89 E-value=25 Score=36.21 Aligned_cols=69 Identities=17% Similarity=0.330 Sum_probs=46.2
Q ss_pred HhHHH-HHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEE--eec--C-hhhHhcHHHHHhh-ccEEEEcCCC
Q 007349 305 KDWED-IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--KIE--S-ADSIPNLHSIISA-SDGAMVARGD 377 (607)
Q Consensus 305 kD~~d-I~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIA--KIE--t-~~av~NldeIl~~-sDGImIgRGD 377 (607)
...+. .+.+.+.|+|||..+|.. ++..++++.+.. .++|++ -|= | .++++|++++++. ++|+.++|.=
T Consensus 156 ~~~~~~~~~a~~~GADyikt~~~~---~~~~l~~~~~~~--~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i 230 (258)
T TIGR01949 156 ELVAHAARLGAELGADIVKTPYTG---DIDSFRDVVKGC--PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNI 230 (258)
T ss_pred HHHHHHHHHHHHHCCCEEeccCCC---CHHHHHHHHHhC--CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHh
Confidence 34444 366778999999999863 455566665433 344444 342 2 4468899999988 8999998754
Q ss_pred c
Q 007349 378 L 378 (607)
Q Consensus 378 L 378 (607)
+
T Consensus 231 ~ 231 (258)
T TIGR01949 231 F 231 (258)
T ss_pred h
Confidence 4
No 235
>PRK06381 threonine synthase; Validated
Probab=59.79 E-value=1.4e+02 Score=31.47 Aligned_cols=118 Identities=13% Similarity=0.128 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+++. .|.......+...-..|++.+...+ .| -++++...+.++. +..++.
T Consensus 77 alA~~aa~~G~~~~iv-----------vp~~~~~~~~~~l~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~~~~~~ 138 (319)
T PRK06381 77 SIAYFARLYGLKAVIF-----------IPRSYSNSRVKEMEKYGAEIIYVDG-----KY-EEAVERSRKFAKE-NGIYDA 138 (319)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEcCC-----CH-HHHHHHHHHHHHH-cCcEec
Confidence 4556899999999773 2222223344567789999988864 23 4677777777654 222211
Q ss_pred CCCCCCccccCCCC--hhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHHhc----------CCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSH--MGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILSHY----------RPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~--~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is~~----------RP~~PIIAvT~d~ 535 (607)
.. +. .++ ..+....-+.++.++++ . .||+.+-+|.|+--++++ .|...|+++.+..
T Consensus 139 ~~-~~------~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~ 209 (319)
T PRK06381 139 NP-GS------VNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSG 209 (319)
T ss_pred CC-CC------CCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCC
Confidence 11 10 011 12334445567777776 3 688899999998887765 6888999999854
No 236
>PRK00208 thiG thiazole synthase; Reviewed
Probab=59.61 E-value=2.2e+02 Score=29.94 Aligned_cols=86 Identities=28% Similarity=0.308 Sum_probs=56.2
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccccc
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 447 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa 447 (607)
+|.||.--...|...|+.+ +...+.+.+. .+.|||+ ....-|. +|++.++..|+|++++.+--+
T Consensus 145 ~~~vmPlg~pIGsg~gi~~-~~~i~~i~e~---~~vpVIv---------eaGI~tp---eda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 145 CAAVMPLGAPIGSGLGLLN-PYNLRIIIEQ---ADVPVIV---------DAGIGTP---SDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---cCCeEEE---------eCCCCCH---HHHHHHHHcCCCEEEEChHhh
Confidence 4455441122333345444 5555555443 4789988 4444443 468899999999999998888
Q ss_pred CCCCHHHHHHHHHHHHHHhhcC
Q 007349 448 HGKFPLKAVKVMHTVALRTESS 469 (607)
Q Consensus 448 ~G~yPveaV~~m~~I~~~aE~~ 469 (607)
..+.|..-.+.+..-...-...
T Consensus 209 ka~dP~~ma~af~~Av~aGr~a 230 (250)
T PRK00208 209 VAGDPVAMARAFKLAVEAGRLA 230 (250)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 8889998888877766555443
No 237
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=59.52 E-value=63 Score=33.26 Aligned_cols=112 Identities=19% Similarity=0.193 Sum_probs=67.4
Q ss_pred HHHHhhHhcCCcEEEe---------------ccCCChhHHHHHHHHHHhcCC--CceEEEeecCh--------hhHhcHH
Q 007349 308 EDIKFGVDNQVDFYAV---------------SFVKDAKVVHELKDYLKSCNA--DIHVIVKIESA--------DSIPNLH 362 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~---------------SfV~sa~dv~~vr~~l~~~~~--~i~IIAKIEt~--------~av~Nld 362 (607)
+.++...+.|+++|.+ ..+...+.+..++........ +..|+|..|+. ++++...
T Consensus 88 ~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ 167 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAK 167 (243)
T ss_pred HHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHH
Confidence 4456667789999988 344444555566666655554 89999997664 3344444
Q ss_pred HHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCC-CChHhhhhHHHHHHhccceE
Q 007349 363 SIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPT-PTRAEVSDIAIAVREGADAV 440 (607)
Q Consensus 363 eIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~-PtrAEv~Dv~nav~~G~D~v 440 (607)
.-.+. +|++|+-... . .+++-+.+++...|+.+- +...+. ++..| .-..|+..+
T Consensus 168 ay~~AGAD~v~v~~~~--------~----~~~~~~~~~~~~~Pl~~~------~~~~~~~~~~~~------l~~lG~~~v 223 (243)
T cd00377 168 AYAEAGADGIFVEGLK--------D----PEEIRAFAEAPDVPLNVN------MTPGGNLLTVAE------LAELGVRRV 223 (243)
T ss_pred HHHHcCCCEEEeCCCC--------C----HHHHHHHHhcCCCCEEEE------ecCCCCCCCHHH------HHHCCCeEE
Confidence 44444 8999994211 1 255556667788998762 111111 34443 445588877
Q ss_pred Eec
Q 007349 441 MLS 443 (607)
Q Consensus 441 mLs 443 (607)
...
T Consensus 224 ~~~ 226 (243)
T cd00377 224 SYG 226 (243)
T ss_pred EEC
Confidence 764
No 238
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=59.39 E-value=1.8e+02 Score=28.27 Aligned_cols=141 Identities=17% Similarity=0.166 Sum_probs=78.2
Q ss_pred CCCCHHhH-HHHHhhHhcCCcEEEe-----ccCCCh----hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-c
Q 007349 300 PSITDKDW-EDIKFGVDNQVDFYAV-----SFVKDA----KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-S 368 (607)
Q Consensus 300 p~lt~kD~-~dI~~al~~gvD~I~~-----SfV~sa----~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-s 368 (607)
..+...+. +.++.+.+.|+|+|.+ +|+.+. +.+.++++.. +....+-.++.++ .+.++.+.+. +
T Consensus 7 ~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~--~~~~~~~~~~g~ 81 (211)
T cd00429 7 LSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENP--ERYIEAFAKAGA 81 (211)
T ss_pred ecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCH--HHHHHHHHHcCC
Confidence 34444444 5567888999999998 666433 3344444332 2223344566554 3346666655 7
Q ss_pred cEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc--cc
Q 007349 369 DGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG--ET 446 (607)
Q Consensus 369 DGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~--ET 446 (607)
||+.+-= +.. ......++.+++.|..+++.+ ++. +..| .+..+..++|.+++.+ .|
T Consensus 82 dgv~vh~-------~~~---~~~~~~~~~~~~~~~~~g~~~--------~~~-~~~~---~~~~~~~~~d~i~~~~~~~g 139 (211)
T cd00429 82 DIITFHA-------EAT---DHLHRTIQLIKELGMKAGVAL--------NPG-TPVE---VLEPYLDEVDLVLVMSVNPG 139 (211)
T ss_pred CEEEECc-------cch---hhHHHHHHHHHHCCCeEEEEe--------cCC-CCHH---HHHHHHhhCCEEEEEEECCC
Confidence 9987731 111 112355888889998888742 111 1111 2233445578776543 12
Q ss_pred cCC-CCHHHHHHHHHHHHHHhh
Q 007349 447 AHG-KFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 447 a~G-~yPveaV~~m~~I~~~aE 467 (607)
..| .++....+.++++.....
T Consensus 140 ~tg~~~~~~~~~~i~~~~~~~~ 161 (211)
T cd00429 140 FGGQKFIPEVLEKIRKLRELIP 161 (211)
T ss_pred CCCcccCHHHHHHHHHHHHHHH
Confidence 233 577777777777765554
No 239
>PRK09224 threonine dehydratase; Reviewed
Probab=59.39 E-value=1.3e+02 Score=34.40 Aligned_cols=119 Identities=9% Similarity=0.053 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+- .|.-+ ....+...-..|++.++.. ...-++.+...+++.+ +...+.
T Consensus 82 avA~aa~~lGi~~~Iv---------mP~~t--p~~K~~~~r~~GA~Vi~~g------~~~~~a~~~a~~l~~~-~g~~~v 143 (504)
T PRK09224 82 GVALSAARLGIKAVIV---------MPVTT--PDIKVDAVRAFGGEVVLHG------DSFDEAYAHAIELAEE-EGLTFI 143 (504)
T ss_pred HHHHHHHHcCCCEEEE---------ECCCC--CHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cCCEEe
Confidence 4666899999998762 22211 1223445567899877663 2346788777776654 222211
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHH----HhcCCCCeEEEEeCCHH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVIL----SHYRPSSTIFAFTNQER 536 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~i----s~~RP~~PIIAvT~d~~ 536 (607)
. .|.+ ......-..-+.++.++++ . .|+|..-+|.++.-+ ..++|...||++-+...
T Consensus 144 ~-~f~~------~~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~ 207 (504)
T PRK09224 144 H-PFDD------PDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDS 207 (504)
T ss_pred C-CCCC------cHHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 1 1211 1122222333567777775 4 688888888766554 46789999999998543
No 240
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=59.32 E-value=1.9e+02 Score=28.67 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=78.3
Q ss_pred CHHhHHHH-HhhHhcCCcEEEec-----cCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhc---HHHHHhh-ccEEE
Q 007349 303 TDKDWEDI-KFGVDNQVDFYAVS-----FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPN---LHSIISA-SDGAM 372 (607)
Q Consensus 303 t~kD~~dI-~~al~~gvD~I~~S-----fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~N---ldeIl~~-sDGIm 372 (607)
+..|..++ +...+.|++++.+. |-.+.+++..+++.. +++|+.| ..+.+ +++..+. +|++.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEE
Confidence 34455444 45567899988653 335777777777764 5677765 23333 3444444 89999
Q ss_pred EcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCH
Q 007349 373 VARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP 452 (607)
Q Consensus 373 IgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yP 452 (607)
++--||. . ..-+++++.+...|..+++.+. +-. ++..+...|+|.+..++.+. ..++
T Consensus 100 l~~~~~~-------~-~~~~~~~~~~~~~g~~~~v~v~-----------~~~---e~~~~~~~g~~~i~~t~~~~-~~~~ 156 (217)
T cd00331 100 LIVAALD-------D-EQLKELYELARELGMEVLVEVH-----------DEE---ELERALALGAKIIGINNRDL-KTFE 156 (217)
T ss_pred EeeccCC-------H-HHHHHHHHHHHHcCCeEEEEEC-----------CHH---HHHHHHHcCCCEEEEeCCCc-cccC
Confidence 8654442 1 4457778888889998866421 223 35677888999999885432 2233
Q ss_pred HHHHHHHHHHHHH
Q 007349 453 LKAVKVMHTVALR 465 (607)
Q Consensus 453 veaV~~m~~I~~~ 465 (607)
... +.+.+++..
T Consensus 157 ~~~-~~~~~l~~~ 168 (217)
T cd00331 157 VDL-NTTERLAPL 168 (217)
T ss_pred cCH-HHHHHHHHh
Confidence 222 444555443
No 241
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=59.31 E-value=2e+02 Score=30.21 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+.+|.|+++. .|..+........-..|++.+...++ +.| -++.+...++.++.... +.
T Consensus 73 alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~~-~~ 136 (290)
T TIGR01138 73 ALAMIAALKGYRMKLL-----------MPDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEGK-LL 136 (290)
T ss_pred HHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCCC-CC
Confidence 3456799999999873 23333233445677789998887542 122 34555555555443222 21
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
. .|.+. . .+.--...-+.++.++++ . .||+.+-+|.|+.-++ .+.|.+.|+++-|..
T Consensus 137 ~-~~~~~----~-~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~ 200 (290)
T TIGR01138 137 D-QFNNP----D-NPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEE 200 (290)
T ss_pred C-ccCCc----c-cHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 1 11110 1 111112334567778775 4 6888888888875544 457999999999964
No 242
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=59.30 E-value=1.6e+02 Score=30.81 Aligned_cols=121 Identities=11% Similarity=0.092 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCC-HHHHHHHHHHHHHHhhcCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVALRTESSLP 471 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~y-PveaV~~m~~I~~~aE~~~~ 471 (607)
-+...|+.+|.|+.+. .|..+....+...-..|++.+..-+ .| -.++++...+++.+...+++
T Consensus 72 alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 135 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPA-----EEGMKGAIDKAEELAAETNKYVM 135 (299)
T ss_pred HHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----CCChHHHHHHHHHHHhhCCCeEe
Confidence 3556789999998763 3333333445566778999887643 23 24566665555443211111
Q ss_pred CCCCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHH----HhcCCCCeEEEEeCCH
Q 007349 472 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVIL----SHYRPSSTIFAFTNQE 535 (607)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~i----s~~RP~~PIIAvT~d~ 535 (607)
..+ |.+. ..+..-....+.++.++++ . .||+.+-+|.++--+ ..++|...|+++-+..
T Consensus 136 ~~~-~~~~-----~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~ 200 (299)
T TIGR01136 136 LDQ-FENP-----ANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAE 200 (299)
T ss_pred cCC-CCCc-----hhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 111 1100 0111112334557888886 4 688888888887444 4567999999999964
No 243
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=58.87 E-value=2.6e+02 Score=30.03 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=76.4
Q ss_pred HhHHHH-HhhHhcCCcEEEeccC--C-Chh----HH-HHHHHHHHhc--CCCceEEEeecChhhHhcHHHHHhh-----c
Q 007349 305 KDWEDI-KFGVDNQVDFYAVSFV--K-DAK----VV-HELKDYLKSC--NADIHVIVKIESADSIPNLHSIISA-----S 368 (607)
Q Consensus 305 kD~~dI-~~al~~gvD~I~~SfV--~-sa~----dv-~~vr~~l~~~--~~~i~IIAKIEt~~av~NldeIl~~-----s 368 (607)
.++.++ +.+.+.|+|+|-+.+- . +.. +. ..+.+.++.. .-+++|++|+- + .+.++.++++. +
T Consensus 112 ~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~-p-~~~~~~~~a~~l~~~Ga 189 (325)
T cd04739 112 GGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLS-P-FFSALAHMAKQLDAAGA 189 (325)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcC-C-CccCHHHHHHHHHHcCC
Confidence 344444 3444568999866441 2 111 01 1123333221 12589999984 3 24466666654 6
Q ss_pred cEEEEc-CCCcccCCCC--------------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHH
Q 007349 369 DGAMVA-RGDLGAELPI--------------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAV 433 (607)
Q Consensus 369 DGImIg-RGDLg~elg~--------------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav 433 (607)
|||.+. |. .+..+.+ ...+...+.+-+..+....|++-. ...-+ ..|+..++
T Consensus 190 dgi~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~---------GGI~s---~~Da~e~l 256 (325)
T cd04739 190 DGLVLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAAS---------GGVHD---AEDVVKYL 256 (325)
T ss_pred CeEEEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEE---------CCCCC---HHHHHHHH
Confidence 888764 32 1111111 123444454444555567888763 33322 34788999
Q ss_pred HhccceEEecccccCCCC-HHHHHHHHHHHHHHhhcCC
Q 007349 434 REGADAVMLSGETAHGKF-PLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 434 ~~G~D~vmLs~ETa~G~y-PveaV~~m~~I~~~aE~~~ 470 (607)
..|+|+|++. |+.=.+ |- .+.+|+++.+..+
T Consensus 257 ~aGA~~Vqv~--ta~~~~gp~----~~~~i~~~L~~~l 288 (325)
T cd04739 257 LAGADVVMTT--SALLRHGPD----YIGTLLAGLEAWM 288 (325)
T ss_pred HcCCCeeEEe--hhhhhcCch----HHHHHHHHHHHHH
Confidence 9999999998 332221 32 4555555555444
No 244
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=58.86 E-value=1.6e+02 Score=30.24 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHhhHhcCCcEEEeccCC----------ChhHHHHHHHHHHhcCCCce
Q 007349 308 EDIKFGVDNQVDFYAVSFVK----------DAKVVHELKDYLKSCNADIH 347 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~----------sa~dv~~vr~~l~~~~~~i~ 347 (607)
+.++.+.+.|.|+|-++.-. +.+++.++++.+++.|-.+.
T Consensus 25 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 25 EKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 56677789999999886422 56778888888887765543
No 245
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=58.79 E-value=2e+02 Score=30.17 Aligned_cols=118 Identities=18% Similarity=0.245 Sum_probs=71.9
Q ss_pred HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCC-CCH
Q 007349 309 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPI-EDV 387 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~-e~v 387 (607)
-++.+.+.|+|++.+|=.. .++-.++++.+.+.| +.+|..|=-...-+.+..|++.++|.+=.-+=.|+ .|. ..+
T Consensus 107 F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~ 182 (259)
T PF00290_consen 107 FFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTEL 182 (259)
T ss_dssp HHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSC
T ss_pred HHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccc
Confidence 3456667899999988553 355567777777655 44555554445678899999987766543222333 233 356
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 388 PLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 388 ~~~qk~II~~c~~a-GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
+.-.+..++..++. .+|+.+ --..-++++ + ..+..|+|+++..
T Consensus 183 ~~~l~~~i~~ik~~~~~Pv~v---------GFGI~~~e~---~-~~~~~~aDGvIVG 226 (259)
T PF00290_consen 183 PDELKEFIKRIKKHTDLPVAV---------GFGISTPEQ---A-KKLAAGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHHTTSS-EEE---------ESSS-SHHH---H-HHHHTTSSEEEES
T ss_pred hHHHHHHHHHHHhhcCcceEE---------ecCCCCHHH---H-HHHHccCCEEEEC
Confidence 66667777777776 588876 334444443 3 2333899999975
No 246
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=58.76 E-value=1e+02 Score=30.55 Aligned_cols=141 Identities=21% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCCCHHhHH-HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHH-------HHHhh-ccE
Q 007349 300 PSITDKDWE-DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLH-------SIISA-SDG 370 (607)
Q Consensus 300 p~lt~kD~~-dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~Nld-------eIl~~-sDG 370 (607)
|..+..|.+ .+..+.++|+|.|.++ +..+..+++++.. ..+.+-+=+=.+.|-...+ +-++. +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 777888874 4467888899998876 5666667777643 3344444454444433333 33333 565
Q ss_pred EEEcCCCcccCCCC------CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHH-HHHHhccceEEec
Q 007349 371 AMVARGDLGAELPI------EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA-IAVREGADAVMLS 443 (607)
Q Consensus 371 ImIgRGDLg~elg~------e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~-nav~~G~D~vmLs 443 (607)
|-+- +.+|. +.+..-.+++.+.|. |+|+.+ ++|. +.-+..++...+ -++..|+|.+=-|
T Consensus 86 vdvv-----~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv---I~e~----~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 86 IDMV-----INIGALKSGDYEAVYEEIAAVVEACG--GAPLKV---ILET----GLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred EEEe-----ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE---EEec----CCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 5542 12221 223333445555554 788744 2221 111334554443 3667799987654
Q ss_pred ccccCCCC----HHHHHHHHHHHHH
Q 007349 444 GETAHGKF----PLKAVKVMHTVAL 464 (607)
Q Consensus 444 ~ETa~G~y----PveaV~~m~~I~~ 464 (607)
.|.. -++.|+.|.+++.
T Consensus 152 ----TG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 152 ----TGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred ----CCCCCCCCCHHHHHHHHHHhC
Confidence 4443 2477888888776
No 247
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=58.34 E-value=24 Score=37.01 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=43.9
Q ss_pred HhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEc
Q 007349 305 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVA 374 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIg 374 (607)
...+++..|.+.|+|+|++..+ ++++++++.+.+. .++++.| +=. --.+|+.++++. +|+|-++
T Consensus 186 ~t~eea~~A~~~gaDyI~ld~~-~~e~lk~~v~~~~---~~ipi~A-sGG-I~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 186 ESLEEAEEAAEAGADIIMLDNM-KPEEIKEAVQLLK---GRVLLEA-SGG-ITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhc---CCCcEEE-ECC-CCHHHHHHHHHcCCCEEEeC
Confidence 3456777888999999999875 5677777666552 2344444 101 135788888888 9999995
No 248
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=58.31 E-value=1.6e+02 Score=33.34 Aligned_cols=123 Identities=18% Similarity=0.209 Sum_probs=67.5
Q ss_pred hHHHHHhhHhcCCcEEEeccC-C-ChhHHHHHHHH-H--HhcC---CCceEEEeecChhhHhcH---------HHHHhh-
Q 007349 306 DWEDIKFGVDNQVDFYAVSFV-K-DAKVVHELKDY-L--KSCN---ADIHVIVKIESADSIPNL---------HSIISA- 367 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV-~-sa~dv~~vr~~-l--~~~~---~~i~IIAKIEt~~av~Nl---------deIl~~- 367 (607)
+.+.++..+++|++.|..|.- . ++. +...+.. + ...+ ....|++|+-+++-.... +.+.+.
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~-~v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPA-LVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcc-hhhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 345567778999998877622 1 222 2121210 0 0000 124799998776655431 122211
Q ss_pred ---------------ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHH------c--CCCEEEEcccchhhhcCCCCChH
Q 007349 368 ---------------SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS------M--QKPVIVATNMLESMIDHPTPTRA 424 (607)
Q Consensus 368 ---------------sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~------a--GKPvivaTqmLeSM~~~~~PtrA 424 (607)
+|.|.+. .|=|-+.+-.....+.-.|++...+ . .+|||.|- ..-|.
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAG---------GI~t~- 236 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAG---------GIGTP- 236 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeC---------CCCCH-
Confidence 5888887 7777666543344444444433222 2 45688753 33333
Q ss_pred hhhhHHHHHHhccceEEe
Q 007349 425 EVSDIAIAVREGADAVML 442 (607)
Q Consensus 425 Ev~Dv~nav~~G~D~vmL 442 (607)
.+++-++..|+|+|++
T Consensus 237 --~~vaAAlaLGAdgV~~ 252 (444)
T TIGR02814 237 --EAAAAAFMLGADFIVT 252 (444)
T ss_pred --HHHHHHHHcCCcEEEe
Confidence 3578999999999985
No 249
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=58.20 E-value=1.3e+02 Score=33.42 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEEecccc
Q 007349 387 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGET 446 (607)
Q Consensus 387 v~~~qk~II~~c~~a-GKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ET 446 (607)
.+..-++|++.++++ .+|+++ + -.|...++.+++. +...|+|++.+.+=+
T Consensus 166 ~~e~~~~i~~~Vk~~~~iPv~v---------K-LsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 166 DCDLLEEVCGWINAKATVPVWA---------K-MTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred CHHHHHHHHHHHHHhhcCceEE---------E-eCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 477788888888775 799987 2 2355556778877 667889999997533
No 250
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=57.90 E-value=1.4e+02 Score=31.48 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=57.4
Q ss_pred HHHHhhHhcC-CcEEEec------cCCChhHHHHH-HHHHHhcCCCceEEEeec---ChhhHhcHHHHHhh-ccEEEEcC
Q 007349 308 EDIKFGVDNQ-VDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 308 ~dI~~al~~g-vD~I~~S------fV~sa~dv~~v-r~~l~~~~~~i~IIAKIE---t~~av~NldeIl~~-sDGImIgR 375 (607)
+.+++.++.| +|+|.+. +.=+.++-.++ +...+..+.+++|++.+- |.++++....-.+. +|++|+.+
T Consensus 25 ~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 25 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 6667888999 9998765 22344444443 344555666789999885 44555554444444 89999975
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 007349 376 GDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 408 (607)
Q Consensus 376 GDLg~elg~e~v~~~qk~II~~c~~a-GKPviva 408 (607)
-..-. ...+++...-+.+ |.+. +.|+++.
T Consensus 105 P~y~~-~~~~~i~~yf~~v---~~~~~~lpv~lY 134 (290)
T TIGR00683 105 PFYYK-FSFPEIKHYYDTI---IAETGGLNMIVY 134 (290)
T ss_pred CcCCC-CCHHHHHHHHHHH---HhhCCCCCEEEE
Confidence 43211 1113333333334 4445 6999884
No 251
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=57.66 E-value=96 Score=33.04 Aligned_cols=116 Identities=17% Similarity=0.253 Sum_probs=73.8
Q ss_pred CceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCE-EEEcccc---hhhhcCC
Q 007349 345 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV-IVATNML---ESMIDHP 419 (607)
Q Consensus 345 ~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPv-ivaTqmL---eSM~~~~ 419 (607)
.++|...+.+..-++.+..-++. .+-||+... .+|+++=...-+++++.|++.|.+| .=-.++= +......
T Consensus 77 ~vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 152 (286)
T PRK08610 77 TIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDAS----HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADG 152 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcc
Confidence 37888999888765555444444 688999743 4677777778899999999999987 1101110 1100000
Q ss_pred -CCChHhhhhHHHHHH-hccceEEecccccCCCC---HHHHHHHHHHHHHHh
Q 007349 420 -TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKF---PLKAVKVMHTVALRT 466 (607)
Q Consensus 420 -~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~y---PveaV~~m~~I~~~a 466 (607)
.=| ...+...++. -|+|++-.+--|+.|.| |---.+.|.+|....
T Consensus 153 ~~yT--~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 153 IIYA--DPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred cccC--CHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH
Confidence 001 1234456665 49999999999999999 434456666665443
No 252
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=57.59 E-value=1.3e+02 Score=32.95 Aligned_cols=130 Identities=13% Similarity=0.059 Sum_probs=71.5
Q ss_pred HhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCcccCCCCCC
Q 007349 311 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIED 386 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDLg~elg~e~ 386 (607)
..|...|+|+|-++. +--.+...|.++ +.+..|-+-+ .|++++..+ +|.|.+||---+..=+-..
T Consensus 211 dlAl~~~aDGVHLgq--~dl~~~~aR~ll---g~~~iIG~S~------Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~ 279 (347)
T PRK02615 211 DIALAVDADGVHLGQ--EDLPLAVARQLL---GPEKIIGRST------TNPEEMAKAIAEGADYIGVGPVFPTPTKPGKA 279 (347)
T ss_pred HHHHHcCCCEEEeCh--hhcCHHHHHHhc---CCCCEEEEec------CCHHHHHHHHHcCCCEEEECCCcCCCCCCCCC
Confidence 345566888887763 111134445544 3443444433 345554443 7999999743321111100
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 387 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 387 v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
+.--+.+-..+.....||+. ..+. +.. ++......|+|+|.+.+.-.....|.++++.+.....+
T Consensus 280 -~~Gle~l~~~~~~~~iPv~A---------iGGI-~~~---ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 280 -PAGLEYLKYAAKEAPIPWFA---------IGGI-DKS---NIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred -CCCHHHHHHHHHhCCCCEEE---------ECCC-CHH---HHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 11112222334456789876 2332 222 34466778999999887766667799999888776543
No 253
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=57.34 E-value=95 Score=33.06 Aligned_cols=124 Identities=12% Similarity=0.161 Sum_probs=76.8
Q ss_pred HHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-EEcccc---h
Q 007349 339 LKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNML---E 413 (607)
Q Consensus 339 l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqmL---e 413 (607)
.++.+..++|...+.+..-++.+.+=++. .+-||+... .+|+++=...-+++++.|++.|.+|= =-.++- +
T Consensus 71 a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS----~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~ 146 (288)
T TIGR00167 71 SEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDGS----HEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEED 146 (288)
T ss_pred HHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccC
Confidence 33443478899999988755554444443 688999743 46777777788999999999999972 111110 0
Q ss_pred hhhcCCCC-ChHhhhhHHHHHH-hccceEEecccccCCCCH---H-HHHHHHHHHHHHh
Q 007349 414 SMIDHPTP-TRAEVSDIAIAVR-EGADAVMLSGETAHGKFP---L-KAVKVMHTVALRT 466 (607)
Q Consensus 414 SM~~~~~P-trAEv~Dv~nav~-~G~D~vmLs~ETa~G~yP---v-eaV~~m~~I~~~a 466 (607)
........ ..-...+...++. -|+|++-.+--|+.|.|+ . --.+.|.+|....
T Consensus 147 ~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v 205 (288)
T TIGR00167 147 GVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV 205 (288)
T ss_pred CcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 00000000 0011224557776 499999999999999994 3 3455566665444
No 254
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=57.33 E-value=1.7e+02 Score=31.71 Aligned_cols=148 Identities=17% Similarity=0.126 Sum_probs=91.5
Q ss_pred HHhHHHHHhhHhc--CCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHh---h--c--cEEEEc
Q 007349 304 DKDWEDIKFGVDN--QVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS---A--S--DGAMVA 374 (607)
Q Consensus 304 ~kD~~dI~~al~~--gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~---~--s--DGImIg 374 (607)
++|.+.|+.+++. |-..+.-| -+.+++.++-....+.|. .+++.- ..-++-+.++.. . . +-|++.
T Consensus 136 ~kD~evleaale~~~g~~pLInS--at~en~~~i~~lA~~y~~--~Vva~s--~~Dln~ak~L~~~l~~~Gi~~edIviD 209 (319)
T PRK04452 136 EKDAEVLEKVAEAAEGERCLLGS--AEEDNYKKIAAAAMAYGH--AVIAWS--PLDINLAKQLNILLTELGVPRERIVMD 209 (319)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEE--CCHHHHHHHHHHHHHhCC--eEEEEc--HHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 4588888877764 33445545 357777777776665554 444442 223444444443 2 3 667889
Q ss_pred CCCcccCCCCCCHHHHHHHHHHHHHH----cCCCEEEEcccc------hhhh------c-CCCCChH---hhhhHHHHHH
Q 007349 375 RGDLGAELPIEDVPLLQEDIIRRCRS----MQKPVIVATNML------ESMI------D-HPTPTRA---EVSDIAIAVR 434 (607)
Q Consensus 375 RGDLg~elg~e~v~~~qk~II~~c~~----aGKPvivaTqmL------eSM~------~-~~~PtrA---Ev~Dv~nav~ 434 (607)
++=.++..|.+.....+.+|-..+-+ .|-|+|.. -.. |+.. . .+.-.|+ |+.-...++.
T Consensus 210 P~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~-~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~ 288 (319)
T PRK04452 210 PTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISG-VGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLL 288 (319)
T ss_pred CCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEec-chhhhhhccccccccccccccccchhccHHHHHHHHHHHHH
Confidence 98888888888777777777766665 45565432 111 1111 0 0011122 5666778888
Q ss_pred hccceEEecccccCCCCHHHHHHHHHHHHHHh
Q 007349 435 EGADAVMLSGETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 435 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 466 (607)
-|+|.++|. || ++|+++++++...
T Consensus 289 ~ga~i~vm~-------hp-~s~~~~~~~~~~l 312 (319)
T PRK04452 289 AGADIFMMR-------HP-ESVKTLKEIIDTL 312 (319)
T ss_pred hcCcEEEEe-------CH-HHHHHHHHHHHHH
Confidence 999999994 78 8999999887654
No 255
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=57.31 E-value=2.7e+02 Score=29.82 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=39.0
Q ss_pred HcCCCEE-EEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 400 SMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 400 ~aGKPvi-vaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
....||+ +| ....-|.+ |+..++..|+|+++..+.-.....|.+..+.+......
T Consensus 195 ~~~iPVV~fA--------iGGI~TPe---dAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 195 LGKLPVVNFA--------AGGVATPA---DAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred hCCCCEEEec--------cCCCCCHH---HHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 3468887 33 44444444 45577789999999987776677899988887766543
No 256
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=57.22 E-value=2.4e+02 Score=30.30 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=17.1
Q ss_pred CCCHHhHHHH--------HhhHhcCCcEEEe
Q 007349 301 SITDKDWEDI--------KFGVDNQVDFYAV 323 (607)
Q Consensus 301 ~lt~kD~~dI--------~~al~~gvD~I~~ 323 (607)
.+|..|++.+ +.+.+.|+|+|-+
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVei 168 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQI 168 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5788887655 4556789999965
No 257
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=57.22 E-value=46 Score=34.94 Aligned_cols=72 Identities=19% Similarity=0.167 Sum_probs=47.4
Q ss_pred CCHHhHHH-HHhhHhcC-CcEEEeccCCCh--hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCC
Q 007349 302 ITDKDWED-IKFGVDNQ-VDFYAVSFVKDA--KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARG 376 (607)
Q Consensus 302 lt~kD~~d-I~~al~~g-vD~I~~SfV~sa--~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRG 376 (607)
|.+.+.++ ++.+...+ +|.|.+|-..+. .|+..++.+-+....-..+++ +=-..+|+.++++.+||+.||-+
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvllg---gGvt~eNv~e~l~~adGviVgS~ 229 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAG---SGVNLENVEELLSIADGVIVATT 229 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEE---CCCCHHHHHHHHhhCCEEEECCC
Confidence 45555543 44556666 999999987665 556666655432222233443 55567899999999999999843
No 258
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=57.20 E-value=2.3e+02 Score=30.43 Aligned_cols=92 Identities=21% Similarity=0.190 Sum_probs=50.2
Q ss_pred CCCceEEEeecChhhHhcHHHHHhh-----ccEEEE-cCC----C-----cccCC-CC---CCHHHHHHHHHHHHHHc--
Q 007349 343 NADIHVIVKIESADSIPNLHSIISA-----SDGAMV-ARG----D-----LGAEL-PI---EDVPLLQEDIIRRCRSM-- 401 (607)
Q Consensus 343 ~~~i~IIAKIEt~~av~NldeIl~~-----sDGImI-gRG----D-----Lg~el-g~---e~v~~~qk~II~~c~~a-- 401 (607)
+.+++|++|+---...+++.++++. +|+|.+ +|- + +.... |+ ..-+...+.+-...+..
T Consensus 200 ~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~ 279 (327)
T cd04738 200 GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGG 279 (327)
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCC
Confidence 4468999999422222345555443 698885 321 0 11001 11 22334444444444444
Q ss_pred CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccc
Q 007349 402 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 446 (607)
Q Consensus 402 GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 446 (607)
..|++.. ...-|. .|+..++..|+|++|+...-
T Consensus 280 ~ipIi~~---------GGI~t~---~da~e~l~aGAd~V~vg~~~ 312 (327)
T cd04738 280 KIPIIGV---------GGISSG---EDAYEKIRAGASLVQLYTGL 312 (327)
T ss_pred CCcEEEE---------CCCCCH---HHHHHHHHcCCCHHhccHHH
Confidence 5787763 333333 36778888999999997443
No 259
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=57.18 E-value=28 Score=36.80 Aligned_cols=64 Identities=9% Similarity=0.104 Sum_probs=46.8
Q ss_pred HHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEe--ecChhhHhcHHHHHhh-ccEEEEcC
Q 007349 304 DKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 304 ~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAK--IEt~~av~NldeIl~~-sDGImIgR 375 (607)
-.+.+++..+++.|+|+|.+... +.+++.++.+.+. .++++.|- | -.+|+.+.++. +|+|-+|.
T Consensus 196 v~tleea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~---~~i~leAsGGI----t~~ni~~~a~tGvD~Isvg~ 262 (277)
T PRK05742 196 VESLDELRQALAAGADIVMLDEL-SLDDMREAVRLTA---GRAKLEASGGI----NESTLRVIAETGVDYISIGA 262 (277)
T ss_pred eCCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC---CCCcEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 34567788889999999999754 7777777766552 35555552 3 25788888888 99999984
No 260
>PLN02417 dihydrodipicolinate synthase
Probab=57.06 E-value=59 Score=34.03 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=56.1
Q ss_pred HHHHhhHhcCCcEEEecc------CCChhHHHH-HHHHHHhcCCCceEEEeec---ChhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~Sf------V~sa~dv~~-vr~~l~~~~~~i~IIAKIE---t~~av~NldeIl~~-sDGImIgRG 376 (607)
+.+++.++.|+++|.+.- .-+.++-.+ ++...+..+.+++||+-+= |.++++....--+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 26 SLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred HHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 556788899999987641 122222222 3333445566789999884 45566555555444 899999876
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
.... .+-+.+...-+.|.+ +. |+++.
T Consensus 106 ~y~~-~~~~~i~~~f~~va~----~~-pi~lY 131 (280)
T PLN02417 106 YYGK-TSQEGLIKHFETVLD----MG-PTIIY 131 (280)
T ss_pred ccCC-CCHHHHHHHHHHHHh----hC-CEEEE
Confidence 5432 222344444455544 24 98874
No 261
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.04 E-value=79 Score=32.09 Aligned_cols=107 Identities=14% Similarity=0.172 Sum_probs=63.9
Q ss_pred EEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhc-c--EEEEcCCC--------cccCCCCC--CH
Q 007349 321 YAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISAS-D--GAMVARGD--------LGAELPIE--DV 387 (607)
Q Consensus 321 I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~s-D--GImIgRGD--------Lg~elg~e--~v 387 (607)
+.+=...++++...+.+.+-+.|-+..=| -.-|+.+++.+.++.+.. | .++||-|= ...+.|.+ --
T Consensus 16 i~vir~~~~~~a~~~~~al~~~Gi~~iEi-t~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fivs 94 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKGGIKAIEV-TYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVS 94 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEE-ECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEEC
Confidence 33334567777777666665555432222 224777777777777654 2 47777551 11111110 12
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEe
Q 007349 388 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 442 (607)
Q Consensus 388 ~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 442 (607)
|.....+++.|++.|.|++=- .-|. +++..+...|+|.+-+
T Consensus 95 P~~~~~v~~~~~~~~i~~iPG-----------~~T~---~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 95 PSFNRETAKICNLYQIPYLPG-----------CMTV---TEIVTALEAGSEIVKL 135 (213)
T ss_pred CCCCHHHHHHHHHcCCCEECC-----------cCCH---HHHHHHHHcCCCEEEE
Confidence 344578999999999998741 1222 3456888999999998
No 262
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=56.83 E-value=1.6e+02 Score=31.58 Aligned_cols=113 Identities=18% Similarity=0.272 Sum_probs=73.1
Q ss_pred cCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHH-cC
Q 007349 325 FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRS-MQ 402 (607)
Q Consensus 325 fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~-aG 402 (607)
=.+++++|.++++.+ +++||+|+---- +...+.+.+. +|.| | ..+...+ -...+...+. .+
T Consensus 52 R~~~p~~I~~I~~~V-----~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~~f~ 114 (287)
T TIGR00343 52 RMSDPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKKKFK 114 (287)
T ss_pred ecCCHHHHHHHHHhC-----CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHHHcC
Confidence 345666666666654 788998763211 5556666665 7887 4 2232222 1333333333 47
Q ss_pred CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcC
Q 007349 403 KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 469 (607)
Q Consensus 403 KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 469 (607)
.|+..- . ..+.+.-+++..|+|.|--++|--.| +-+|||+-|+.+-.++...
T Consensus 115 vpfmad-----------~---~~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 115 VPFVCG-----------A---RDLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred CCEEcc-----------C---CCHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 776541 1 23555779999999999999996666 6899999999998888754
No 263
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=56.80 E-value=1.3e+02 Score=31.70 Aligned_cols=152 Identities=12% Similarity=0.136 Sum_probs=86.4
Q ss_pred CCCCHHhHHHH-HhhHh--cCCcEEEeccCCChhHHHHHHHHHHhcCC-CceEEEeecChhhHhcHHHHHhhc-cEEEEc
Q 007349 300 PSITDKDWEDI-KFGVD--NQVDFYAVSFVKDAKVVHELKDYLKSCNA-DIHVIVKIESADSIPNLHSIISAS-DGAMVA 374 (607)
Q Consensus 300 p~lt~kD~~dI-~~al~--~gvD~I~~SfV~sa~dv~~vr~~l~~~~~-~i~IIAKIEt~~av~NldeIl~~s-DGImIg 374 (607)
|..|+.|.+.+ +.|.+ +++..|.++ +..+..+++.|...+. ++.+.+=|==|.|-...+..+..+ ..+--|
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~~G 96 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQGTPEIRIATVTNFPHGNDDIDIALAETRAAIAYG 96 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 77888887444 67888 588887764 6678888888864443 577777775566655555444331 100001
Q ss_pred CC--CcccCCCC---CCHHHH---HHHHHHHHHHcCCC--EEEEcccchhhhcCCCCChHh-hhhH-HHHHHhccceEEe
Q 007349 375 RG--DLGAELPI---EDVPLL---QEDIIRRCRSMQKP--VIVATNMLESMIDHPTPTRAE-VSDI-AIAVREGADAVML 442 (607)
Q Consensus 375 RG--DLg~elg~---e~v~~~---qk~II~~c~~aGKP--vivaTqmLeSM~~~~~PtrAE-v~Dv-~nav~~G~D~vmL 442 (607)
-- |+-+.+|. .+...+ .+.+.+.|.. |+| ||+ +.+.-+..| +... --++..|+|+|=-
T Consensus 97 AdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIl---------Et~~L~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 97 ADEVDVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVII---------ETGELKDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred CCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEE---------eccccCCHHHHHHHHHHHHHhCCCEEEc
Confidence 10 22223332 133333 3455555531 455 466 444445553 4433 3577889999865
Q ss_pred cccccCCCCHHHHHHHHHHHHHH
Q 007349 443 SGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 443 s~ETa~G~yPveaV~~m~~I~~~ 465 (607)
|.-=+.+.-.++.|+.|++.+.+
T Consensus 167 STGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 167 STGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh
Confidence 52222222347899999888754
No 264
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=56.39 E-value=2.7e+02 Score=30.62 Aligned_cols=147 Identities=8% Similarity=0.126 Sum_probs=79.0
Q ss_pred HHHhhHhcCCcEEEec-cCCChhHHH---HHHHHHHhcCC-CceEEEee-------cChh-------hHhcHHHHHhh--
Q 007349 309 DIKFGVDNQVDFYAVS-FVKDAKVVH---ELKDYLKSCNA-DIHVIVKI-------ESAD-------SIPNLHSIISA-- 367 (607)
Q Consensus 309 dI~~al~~gvD~I~~S-fV~sa~dv~---~vr~~l~~~~~-~i~IIAKI-------Et~~-------av~NldeIl~~-- 367 (607)
+++.|+..|+|.|++. |.-+..+-. ++.+..+++.. .+++++.+ ++.. -+...--|...
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence 3556889999988774 444444333 34444444332 35566633 2211 11122222222
Q ss_pred ccEEEEc-CCCccc---------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh-hhhHH
Q 007349 368 SDGAMVA-RGDLGA---------------ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIA 430 (607)
Q Consensus 368 sDGImIg-RGDLg~---------------elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE-v~Dv~ 430 (607)
+|-|=+- +||-.. .+..+.....-+.+++.|-+-..||++| -.+.-+-.| ...+.
T Consensus 231 ADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviA--------GG~k~~~~e~L~~v~ 302 (348)
T PRK09250 231 ADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINS--------GGASKGEDDLLDAVR 302 (348)
T ss_pred CCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEe--------CCCCCCHHHHHHHHH
Confidence 5777665 333111 1122344555667788776557899986 333323333 66788
Q ss_pred HH---HHhccceEEecccccCCCCHHHHHHHHHHHHH
Q 007349 431 IA---VREGADAVMLSGETAHGKFPLKAVKVMHTVAL 464 (607)
Q Consensus 431 na---v~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 464 (607)
.+ +..|+-++...--.- -.=-.|+|++++.|..
T Consensus 303 ~a~~~i~aGa~Gv~iGRNIf-Q~~~~ea~~~~~~i~~ 338 (348)
T PRK09250 303 TAVINKRAGGMGLIIGRKAF-QRPMAEGVKLLNAIQD 338 (348)
T ss_pred HHHHhhhcCCcchhhchhhh-cCCcHHHHHHHHHHHH
Confidence 88 899998876532222 2223488888888753
No 265
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=56.33 E-value=62 Score=35.66 Aligned_cols=94 Identities=19% Similarity=0.247 Sum_probs=51.0
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHH---HHhh-ccEEEEcCCCcccCCCC-CCHHHHHHHHHHHHHHcC
Q 007349 328 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHS---IISA-SDGAMVARGDLGAELPI-EDVPLLQEDIIRRCRSMQ 402 (607)
Q Consensus 328 sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~Nlde---Il~~-sDGImIgRGDLg~elg~-e~v~~~qk~II~~c~~aG 402 (607)
+-+++..+++.. +.+|++| |+.+.++ ..+. +|+|.|+--- |-.+.- ..-.....++.++. .-.
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~~~~a~~~~L~ei~~av-~~~ 283 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLDGGPAAFDSLQEVAEAV-DKR 283 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCCCCCcHHHHHHHHHHHh-CCC
Confidence 346666666654 4678888 3444333 3333 7999887311 223211 11112222332221 123
Q ss_pred CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccc
Q 007349 403 KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 445 (607)
Q Consensus 403 KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 445 (607)
+|+|. ....- .-.|+..++..|+|++|+..-
T Consensus 284 i~vi~---------dGGIr---~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 284 VPIVF---------DSGVR---RGQHVFKALASGADLVALGRP 314 (367)
T ss_pred CcEEe---------eCCcC---CHHHHHHHHHcCCCEEEEcHH
Confidence 78887 23322 246899999999999998643
No 266
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=56.26 E-value=22 Score=38.48 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=41.9
Q ss_pred eEEEecCCCCCCHHHHHHHHHhC--CcEEEEecCCCChHHHHHHHHHHHH
Q 007349 102 KIVCTIGPSTSSREMIWKLAEEG--MNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 102 KIi~TiGPss~~~e~l~~li~aG--m~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
-..+++|-+.++.|.+.+|+++| .|+.=+..|||......++++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHH
Confidence 57788888888899999999999 6999999999998877777777775
No 267
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=56.17 E-value=46 Score=34.65 Aligned_cols=84 Identities=29% Similarity=0.329 Sum_probs=52.7
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccccc
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 447 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa 447 (607)
+..+|---.-.|...|+.. +...+.|++ +...|||+ ....-+. +|.+.+...|+|+|++..--|
T Consensus 145 caavMPlgsPIGSg~Gi~n-~~~l~~i~~---~~~vPvIv---------DAGiG~p---Sdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN-PYNLRIIIE---RADVPVIV---------DAGIGTP---SDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SST-HHHHHHHHH---HGSSSBEE---------ES---SH---HHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCC-HHHHHHHHH---hcCCcEEE---------eCCCCCH---HHHHHHHHcCCceeehhhHHh
Confidence 4566664333444445544 344444543 44899998 3443333 568899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 007349 448 HGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 448 ~G~yPveaV~~m~~I~~~aE 467 (607)
..+.|+.-.+.|+.-+..-.
T Consensus 209 ~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp TSSSHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 99999988888876554433
No 268
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.01 E-value=47 Score=35.43 Aligned_cols=65 Identities=9% Similarity=0.051 Sum_probs=47.5
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhh--HhcHHHHHhh-ccEEEEcC
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a--v~NldeIl~~-sDGImIgR 375 (607)
..+++..+++.|+|.|.+=.. +++++++..+.++..+.++ +||-.-| .+|+.+.++. +|.|.+|.
T Consensus 208 tl~ea~eal~~gaDiI~LDnm-~~e~vk~av~~~~~~~~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDNF-PVWQTQEAVQRRDARAPTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHhccCCCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 345667788999999999765 5888888777766555554 3554434 3588888887 89999984
No 269
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=55.99 E-value=1.3e+02 Score=31.59 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=55.5
Q ss_pred HHHHhhHhcCCcEEEec------cCCChhHHHH-HHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-----ccEEEEcC
Q 007349 308 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVAR 375 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~S------fV~sa~dv~~-vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-----sDGImIgR 375 (607)
+.+++.++.|+|+|.+. +.-+.++-.+ ++..++..+.+++||+-+- . +.++.-+.++. +|++|+.+
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~p 102 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLP 102 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECC
Confidence 45678889999998764 2233444333 3444555567788999884 2 34333333332 79999976
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 376 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 376 GDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
--... .+.+.+...-+.+ +.+.+.|+++.
T Consensus 103 P~y~~-~~~~~i~~~f~~v---~~~~~~pi~lY 131 (289)
T cd00951 103 PYLTE-APQEGLYAHVEAV---CKSTDLGVIVY 131 (289)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhcCCCCEEEE
Confidence 54321 1223344444444 45568999884
No 270
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=55.97 E-value=1.8e+02 Score=27.45 Aligned_cols=132 Identities=18% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCH
Q 007349 309 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDV 387 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v 387 (607)
+++.+.+.|+|++-++ ........++.+. +....+-+-+.|. +.+.+.... +|.|++++..=+..=+-..-
T Consensus 64 ~~~~a~~~g~~~vh~~--~~~~~~~~~~~~~---~~~~~~g~~~~t~---~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~ 135 (196)
T cd00564 64 RVDLALAVGADGVHLG--QDDLPVAEARALL---GPDLIIGVSTHSL---EEALRAEELGADYVGFGPVFPTPTKPGAGP 135 (196)
T ss_pred hHHHHHHcCCCEEecC--cccCCHHHHHHHc---CCCCEEEeeCCCH---HHHHHHhhcCCCEEEECCccCCCCCCCCCC
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHH
Q 007349 388 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHT 461 (607)
Q Consensus 388 ~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~ 461 (607)
+...+.+-+.+.....|++.+ -...+...+ .+...|+|++.+.+---.-.-|.++++.+.+
T Consensus 136 ~~~~~~~~~~~~~~~~pv~a~--------GGi~~~~i~-----~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~~ 196 (196)
T cd00564 136 PLGLELLREIAELVEIPVVAI--------GGITPENAA-----EVLAAGADGVAVISAITGADDPAAAARELLA 196 (196)
T ss_pred CCCHHHHHHHHHhCCCCEEEE--------CCCCHHHHH-----HHHHcCCCEEEEehHhhcCCCHHHHHHHHhC
No 271
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=55.95 E-value=2.3e+02 Score=28.75 Aligned_cols=100 Identities=8% Similarity=0.060 Sum_probs=58.8
Q ss_pred HHHHhhHhcCCcEEEecc------C--CChhHHHHHHHHHHhcCCCceEEEe--------e------cChhhHhcHHHHH
Q 007349 308 EDIKFGVDNQVDFYAVSF------V--KDAKVVHELKDYLKSCNADIHVIVK--------I------ESADSIPNLHSII 365 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~Sf------V--~sa~dv~~vr~~l~~~~~~i~IIAK--------I------Et~~av~NldeIl 365 (607)
+.++.+.+.|.++|-+.. . -+..++.++++.+++.|-.+..+.- + +..++++.+...+
T Consensus 17 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i 96 (275)
T PRK09856 17 HAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAM 96 (275)
T ss_pred HHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHH
Confidence 566788899999988742 1 2235678888888877654332211 0 1123445555555
Q ss_pred hh-----ccEEEEcCCCcccCCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 007349 366 SA-----SDGAMVARGDLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 366 ~~-----sDGImIgRGDLg~elg~----e~v~~~qk~II~~c~~aGKPviv 407 (607)
+. +..|.+.++..+..-.. +.+....+++...|.+.|..+.+
T Consensus 97 ~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 97 DMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 43 57777877654422111 23444556777778888876655
No 272
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=55.86 E-value=1.8e+02 Score=31.72 Aligned_cols=85 Identities=26% Similarity=0.331 Sum_probs=58.8
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccccc
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETA 447 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa 447 (607)
+-.+|--+...|...|+. =|...+.+++. ...||++ -...-+ -+|++.++..|+|+++++.--+
T Consensus 219 ~~avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpViv---------dAGIg~---~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 219 AVAVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLV---------DAGVGT---ASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred CEEEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEE---------eCCCCC---HHHHHHHHHcCCCEEEEcceec
Confidence 345555455566666665 34555555544 5789988 333333 3578999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhc
Q 007349 448 HGKFPLKAVKVMHTVALRTES 468 (607)
Q Consensus 448 ~G~yPveaV~~m~~I~~~aE~ 468 (607)
..+.|+.--+.|+.-...-..
T Consensus 283 ~a~dPv~Ma~A~~~av~aGr~ 303 (326)
T PRK11840 283 EAKNPVLMARAMKLAVEAGRL 303 (326)
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 999999877777766554443
No 273
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=55.74 E-value=2.9e+02 Score=29.68 Aligned_cols=137 Identities=17% Similarity=0.165 Sum_probs=76.6
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCcccC--
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAE-- 381 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDLg~e-- 381 (607)
...+...+.|+|+|..|-+.++.| ++-.+.+..- +.++++ +..|++|-+.. +|.|-- -|+.|.-
T Consensus 87 ~Ea~~L~~~GvDiID~Te~lrpad--~~~~~~K~~f-~~~fma------d~~~l~EAlrai~~GadmI~T-tge~gtg~v 156 (293)
T PRK04180 87 VEAQILEALGVDYIDESEVLTPAD--EEYHIDKWDF-TVPFVC------GARNLGEALRRIAEGAAMIRT-KGEAGTGNV 156 (293)
T ss_pred HHHHHHHHcCCCEEeccCCCCchH--HHHHHHHHHc-CCCEEc------cCCCHHHHHHHHHCCCCeeec-cCCCCCccH
Confidence 333444577999999999988843 3333333322 567777 55666666654 343332 1221110
Q ss_pred -----------------CCC--CCHHHH------HHHHHHH-HHHcCCCEE-EEcccchhhhcCCCCChHhhhhHHHHHH
Q 007349 382 -----------------LPI--EDVPLL------QEDIIRR-CRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVR 434 (607)
Q Consensus 382 -----------------lg~--e~v~~~------qk~II~~-c~~aGKPvi-vaTqmLeSM~~~~~PtrAEv~Dv~nav~ 434 (607)
.|+ +.+... =-.+++. ++....||+ +| ....-|.+ |+..++.
T Consensus 157 ~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~A--------eGGI~TPe---daa~vme 225 (293)
T PRK04180 157 VEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFA--------AGGIATPA---DAALMMQ 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEE--------eCCCCCHH---HHHHHHH
Confidence 011 011110 0022222 334568987 43 44444444 3556778
Q ss_pred hccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 435 EGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 435 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
.|+|++++.+.-.....|.+.++.+......
T Consensus 226 ~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 226 LGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred hCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 8999999987776677899988877766533
No 274
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=55.59 E-value=1.4e+02 Score=32.49 Aligned_cols=123 Identities=17% Similarity=0.296 Sum_probs=76.6
Q ss_pred HhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-EEcccc--hhh
Q 007349 340 KSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNML--ESM 415 (607)
Q Consensus 340 ~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqmL--eSM 415 (607)
++.+..++|...+.+..-++.+.+-++. .+.||+... .+|+++=...-+++++.|+++|..|= =-..+- |--
T Consensus 80 ~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S----~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~ 155 (321)
T PRK07084 80 KELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGS----HLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDE 155 (321)
T ss_pred HHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCC
Confidence 3333367888888887766665555554 689999744 45777777888999999999999871 111110 000
Q ss_pred hcCCCCChHhhhhHHHHHH-hccceEEecccccCCCCHH--------HHHHHHHHHHHHh
Q 007349 416 IDHPTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL--------KAVKVMHTVALRT 466 (607)
Q Consensus 416 ~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~yPv--------eaV~~m~~I~~~a 466 (607)
.....-......+...++. -|+|++..+--|+.|.|+- --.+.|..|..++
T Consensus 156 ~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~ 215 (321)
T PRK07084 156 VSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRI 215 (321)
T ss_pred ccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhc
Confidence 0000000111234456665 4999999999999999963 3345555555544
No 275
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=55.50 E-value=1.2e+02 Score=30.68 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=59.5
Q ss_pred HhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHH
Q 007349 311 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPL 389 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~ 389 (607)
+...+.|++.+-+++ +++.-...++++.++. .++.|-| =|..-.+.++..++. ++-| +.|+
T Consensus 27 ~al~~~Gi~~iEit~-~t~~a~~~i~~l~~~~-~~~~vGA--GTVl~~~~a~~a~~aGA~Fi-vsP~------------- 88 (204)
T TIGR01182 27 KALIEGGLRVLEVTL-RTPVALDAIRLLRKEV-PDALIGA--GTVLNPEQLRQAVDAGAQFI-VSPG------------- 88 (204)
T ss_pred HHHHHcCCCEEEEeC-CCccHHHHHHHHHHHC-CCCEEEE--EeCCCHHHHHHHHHcCCCEE-ECCC-------------
Confidence 344567788877777 5665555555544433 3444333 222223334444444 4444 3332
Q ss_pred HHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 390 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 390 ~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
....+++.|+++|.|++- ..-| -+++..|...|+|.+=+=
T Consensus 89 ~~~~v~~~~~~~~i~~iP-----------G~~T---ptEi~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 89 LTPELAKHAQDHGIPIIP-----------GVAT---PSEIMLALELGITALKLF 128 (204)
T ss_pred CCHHHHHHHHHcCCcEEC-----------CCCC---HHHHHHHHHCCCCEEEEC
Confidence 135899999999999863 1222 245779999999998874
No 276
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=55.36 E-value=2.4e+02 Score=29.28 Aligned_cols=108 Identities=17% Similarity=0.186 Sum_probs=71.7
Q ss_pred hHHHHH-hhHhcCCcEEEe-----ccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHh---cHHHHHhh-ccEEEEcC
Q 007349 306 DWEDIK-FGVDNQVDFYAV-----SFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIP---NLHSIISA-SDGAMVAR 375 (607)
Q Consensus 306 D~~dI~-~al~~gvD~I~~-----SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~---NldeIl~~-sDGImIgR 375 (607)
|..++. ...+.|++.|.+ -|-.+.+++..+++.. +++|+.| .=+- .+++.... +|+|.+.-
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~k----dfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRK----DFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEee----eecCCHHHHHHHHHcCCCEEEEEe
Confidence 444443 345679998877 4668899999988764 5677753 1122 23444433 89999875
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 376 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 376 GDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
.+|. +.-.++++..|+..|.-+++- .-+.+| +..+...|+|.+.+++
T Consensus 142 ~~l~--------~~~l~~li~~a~~lGl~~lve-----------vh~~~E---~~~A~~~gadiIgin~ 188 (260)
T PRK00278 142 AALD--------DEQLKELLDYAHSLGLDVLVE-----------VHDEEE---LERALKLGAPLIGINN 188 (260)
T ss_pred ccCC--------HHHHHHHHHHHHHcCCeEEEE-----------eCCHHH---HHHHHHcCCCEEEECC
Confidence 5553 245678999999999998873 223333 4567788999988764
No 277
>PLN02826 dihydroorotate dehydrogenase
Probab=55.27 E-value=3.4e+02 Score=30.37 Aligned_cols=109 Identities=21% Similarity=0.235 Sum_probs=58.5
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-----ccEEEEc-----C-CCcc-----cCC-CC---CCHHHHHHHHHHHHHHc--
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-----SDGAMVA-----R-GDLG-----AEL-PI---EDVPLLQEDIIRRCRSM-- 401 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-----sDGImIg-----R-GDLg-----~el-g~---e~v~~~qk~II~~c~~a-- 401 (607)
.+++|++||=--..-+++++|++. +|||.+. | +|+- .+. |+ .--+...+.+-+..++.
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 358999999322222345555543 7999875 3 3331 111 12 12233444444444444
Q ss_pred CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCC-HHHHHHHHHHHHHHhhcCC
Q 007349 402 QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKF-PLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 402 GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~y-PveaV~~m~~I~~~aE~~~ 470 (607)
..|+|-.+- .-+ -.|++.++..|++++.+-. +.=.. | ..+.+|.++.++.+
T Consensus 341 ~ipIIgvGG---------I~s---g~Da~e~i~AGAs~VQv~T--a~~~~Gp----~~i~~I~~eL~~~l 392 (409)
T PLN02826 341 KIPLVGCGG---------VSS---GEDAYKKIRAGASLVQLYT--AFAYEGP----ALIPRIKAELAACL 392 (409)
T ss_pred CCcEEEECC---------CCC---HHHHHHHHHhCCCeeeecH--HHHhcCH----HHHHHHHHHHHHHH
Confidence 467766332 222 4589999999999999863 22121 4 34455555555433
No 278
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=55.18 E-value=1.8e+02 Score=30.40 Aligned_cols=121 Identities=13% Similarity=0.075 Sum_probs=68.4
Q ss_pred HHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCH-HHHHHHHHHHHHHhhcCCCC
Q 007349 394 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFP-LKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 394 II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yP-veaV~~m~~I~~~aE~~~~~ 472 (607)
+...|+.+|.|+.+. .|....-......-..|++.+..- |.|. .++++...++..+-...+.+
T Consensus 72 lA~~a~~~Gl~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~-----~~~~~~~~~~~a~~~~~~~~~~~~~ 135 (298)
T TIGR01139 72 LAMVAAARGYKLILT-----------MPETMSIERRKLLKAYGAELVLTP-----GAEGMKGAIAKAEEIAASTPNSYFM 135 (298)
T ss_pred HHHHHHHcCCeEEEE-----------eCCccCHHHHHHHHHcCCEEEEEC-----CCCCHHHHHHHHHHHHHhCCCcEEc
Confidence 456789999998773 222222222445667899998764 3443 46666655554332111101
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
-..|.+ .. .+..-...-+.++.++++ . .||+.+-+|.++--++ .++|...||++-+..
T Consensus 136 ~~~~~n----~~-~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 200 (298)
T TIGR01139 136 LQQFEN----PA-NPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAE 200 (298)
T ss_pred ccccCC----cc-cHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCC
Confidence 111110 00 111112233456777775 4 6889999997775554 556999999999964
No 279
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=54.75 E-value=1.4e+02 Score=31.48 Aligned_cols=97 Identities=13% Similarity=0.129 Sum_probs=57.4
Q ss_pred HHHHhhHhcCCcEEEecc------CCChhHHHH-HHHHHHhcCCCceEEEeecC---hhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVSF------VKDAKVVHE-LKDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~Sf------V~sa~dv~~-vr~~l~~~~~~i~IIAKIEt---~~av~NldeIl~~-sDGImIgRG 376 (607)
+.++|.++.|+++|.+.- .=|.++-.+ ++...+....++.|++-+-. .++++......+. +|++|+.+-
T Consensus 25 ~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 25 ELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred HHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 566888999999987642 122233223 34445556677899988853 3455555554444 899999763
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 408 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~a-GKPviva 408 (607)
..- +. .-..+....-..|.+. +.|+++.
T Consensus 105 ~y~---~~-~~~~l~~~f~~ia~a~~~lpv~iY 133 (294)
T TIGR02313 105 YYN---KP-NQEALYDHFAEVADAVPDFPIIIY 133 (294)
T ss_pred cCC---CC-CHHHHHHHHHHHHHhccCCCEEEE
Confidence 321 11 1233444444456667 8999884
No 280
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=54.69 E-value=1.7e+02 Score=29.52 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=69.5
Q ss_pred CHHhHHH-HHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCccc
Q 007349 303 TDKDWED-IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGA 380 (607)
Q Consensus 303 t~kD~~d-I~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~ 380 (607)
+..+... ++.+++.|+..+-+.+ +++.....++.+.++.+.++. .=.=|.--.++++..++. +|+++.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~~~--iGaGTV~~~~~~~~a~~aGA~fivsp------ 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDRAL--IGAGTVLSPEQVDRLADAGGRLIVTP------ 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCCcE--EeEEecCCHHHHHHHHHcCCCEEECC------
Confidence 4445433 3556788999988885 666666667776665543322 222233334556666665 7888763
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEe
Q 007349 381 ELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 442 (607)
Q Consensus 381 elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 442 (607)
..-..+++.|+..|.+++.. .-+| +++..+...|+|.+-+
T Consensus 91 --------~~~~~v~~~~~~~~~~~~~G---------~~t~-----~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 91 --------NTDPEVIRRAVALGMVVMPG---------VATP-----TEAFAALRAGAQALKL 130 (206)
T ss_pred --------CCCHHHHHHHHHCCCcEEcc---------cCCH-----HHHHHHHHcCCCEEEE
Confidence 22346788899999998873 2222 3356888999999987
No 281
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=54.48 E-value=1.5e+02 Score=31.10 Aligned_cols=146 Identities=16% Similarity=0.194 Sum_probs=82.8
Q ss_pred CCCCHHhHHHHHhhHhcCCcEEEeccCC-------------ChhHHH-HHHHHHHhcCCCceEEEeec-------ChhhH
Q 007349 300 PSITDKDWEDIKFGVDNQVDFYAVSFVK-------------DAKVVH-ELKDYLKSCNADIHVIVKIE-------SADSI 358 (607)
Q Consensus 300 p~lt~kD~~dI~~al~~gvD~I~~SfV~-------------sa~dv~-~vr~~l~~~~~~i~IIAKIE-------t~~av 358 (607)
-.++-+|.--.+.+-+.|+|.|.+..-- +-++.. .++. +.+.-+...|++=++ -.+++
T Consensus 15 ~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~-V~r~~~~p~viaD~~fg~y~~~~~~av 93 (254)
T cd06557 15 VMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRA-VRRGAPRALVVADMPFGSYQTSPEQAL 93 (254)
T ss_pred EEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHH-HHhcCCCCeEEEeCCCCcccCCHHHHH
Confidence 3456677766666677899988654110 111111 1222 222223344777665 23447
Q ss_pred hcHHHHHh-h-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE----EEcccchh---hhc-CCCCChHh--h
Q 007349 359 PNLHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLES---MID-HPTPTRAE--V 426 (607)
Q Consensus 359 ~NldeIl~-~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi----vaTqmLeS---M~~-~~~PtrAE--v 426 (607)
+|.-.+++ + ++||.|-=| ..+...|+++.++|+||+ +--|--.. +.. ..+..+++ +
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i 161 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLL 161 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHHH
Confidence 77777776 4 789998433 256678888999999987 22221111 111 22233333 6
Q ss_pred hhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhh
Q 007349 427 SDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 427 ~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 467 (607)
.+.-.+...|+|+++|-+ - |. +.+..|+++..
T Consensus 162 ~ra~a~~~AGA~~i~lE~-----v-~~---~~~~~i~~~v~ 193 (254)
T cd06557 162 EDALALEEAGAFALVLEC-----V-PA---ELAKEITEALS 193 (254)
T ss_pred HHHHHHHHCCCCEEEEcC-----C-CH---HHHHHHHHhCC
Confidence 667777789999999942 2 32 35666666554
No 282
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=54.14 E-value=9 Score=28.96 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.0
Q ss_pred CcEEEEecC-CCChHHHHHHHHHHH
Q 007349 125 MNVARLNMS-HGDHASHQKTIDLVK 148 (607)
Q Consensus 125 m~v~RiN~s-Hg~~~~~~~~i~~iR 148 (607)
|.|.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 679999999 999999998888774
No 283
>PRK15447 putative protease; Provisional
Probab=53.91 E-value=70 Score=33.98 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=47.8
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
+|+|.+|-..++.-.++ -..-.+++++.|+++||.++++|+-+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 89999996666654433 23445678888999999999976421 112457777888888899988764
No 284
>PLN03013 cysteine synthase
Probab=53.70 E-value=1.9e+02 Score=32.71 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=69.2
Q ss_pred HHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007349 394 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 473 (607)
Q Consensus 394 II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 473 (607)
+...|+..|.|+++. .|..+....+...-..|++.++.... .| ..++++...+++.+....++..
T Consensus 190 LA~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~--~~~a~~~A~ela~~~~g~~~~~ 254 (429)
T PLN03013 190 LAFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG--MTGAVQKAEEILKNTPDAYMLQ 254 (429)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC--hHHHHHHHHHHHhhcCCeEeCC
Confidence 445789999999873 23333333455666789998876432 11 2245666666554422222211
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 007349 474 ITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 536 (607)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~~ 536 (607)
+ |.+. . .+..-...-+.++.++++ . .||+..-+|.+..-++ ..+|++.|+++-|...
T Consensus 255 q-y~Np----~-n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs 318 (429)
T PLN03013 255 Q-FDNP----A-NPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTES 318 (429)
T ss_pred C-CCCH----H-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCC
Confidence 1 1100 0 011111223456767764 4 6888889997665444 4579999999999654
No 285
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=53.50 E-value=30 Score=33.85 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=46.1
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhh--HhcHHHHHhh-ccEEEEcC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a--v~NldeIl~~-sDGImIgR 375 (607)
+.+..+++.|+|.|.+=.. +++++.++.+.+...+.++. ||-.-| .+|+.+.++. +|+|.+|.
T Consensus 91 ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v~----ie~SGGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 91 EEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPRVK----IEASGGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTTSE----EEEESSSSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCcEE----EEEECCCCHHHHHHHHhcCCCEEEcCh
Confidence 4566788999999999654 88999999888887777744 444433 4588888887 79999973
No 286
>PRK15452 putative protease; Provisional
Probab=53.27 E-value=70 Score=36.11 Aligned_cols=87 Identities=11% Similarity=0.146 Sum_probs=55.1
Q ss_pred ceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCC--CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCCh
Q 007349 346 IHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIE--DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTR 423 (607)
Q Consensus 346 i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e--~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~Ptr 423 (607)
+.+.|...+.++++ ..|-.-+|.|.+|-..++.--... .. .-.++.++.|+++|+.++++++. .|..
T Consensus 4 peLlapag~~e~l~--aAi~~GADaVY~G~~~~~~R~~~~~f~~-edl~eav~~ah~~g~kvyvt~n~--------i~~e 72 (443)
T PRK15452 4 PELLSPAGTLKNMR--YAFAYGADAVYAGQPRYSLRVRNNEFNH-ENLALGINEAHALGKKFYVVVNI--------APHN 72 (443)
T ss_pred cEEEEECCCHHHHH--HHHHCCCCEEEECCCccchhhhccCCCH-HHHHHHHHHHHHcCCEEEEEecC--------cCCH
Confidence 34666666655553 223333999999977776532110 11 23567888999999999998653 3444
Q ss_pred HhhhhHH----HHHHhccceEEec
Q 007349 424 AEVSDIA----IAVREGADAVMLS 443 (607)
Q Consensus 424 AEv~Dv~----nav~~G~D~vmLs 443 (607)
.|..... .....|+|+++.+
T Consensus 73 ~el~~~~~~l~~l~~~gvDgvIV~ 96 (443)
T PRK15452 73 AKLKTFIRDLEPVIAMKPDALIMS 96 (443)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEc
Confidence 5544433 3345699999987
No 287
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=53.12 E-value=38 Score=35.52 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=44.6
Q ss_pred HhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhh--HhcHHHHHhh-ccEEEEcC
Q 007349 305 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a--v~NldeIl~~-sDGImIgR 375 (607)
.+.+++..+++.|+|+|++..+ +++++.++.+++. .++++.| .-| .+|+.++++. +|+|-++.
T Consensus 190 ~s~eea~~A~~~gaDyI~ld~~-~~e~l~~~~~~~~---~~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 190 ETLEQLKEALEAGADIIMLDNM-SPEELREAVALLK---GRVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CCHHHHHHHHHcCCCEEEECCc-CHHHHHHHHHHcC---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 3456777888999999999876 4677766666552 2444444 223 4788888888 89999974
No 288
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=52.86 E-value=1.7e+02 Score=29.79 Aligned_cols=129 Identities=15% Similarity=0.194 Sum_probs=73.5
Q ss_pred HHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhh-------HhcHHHHHhh----ccEEEEcC
Q 007349 307 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS-------IPNLHSIISA----SDGAMVAR 375 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a-------v~NldeIl~~----sDGImIgR 375 (607)
.+|++..++.|++.+.++-. ...+ .-+++.++..+.+ .+++-|....+ ..++.+.++. ++.+++.
T Consensus 90 ~edv~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~- 165 (233)
T cd04723 90 LENAQEWLKRGASRVIVGTE-TLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVL- 165 (233)
T ss_pred HHHHHHHHHcCCCeEEEcce-eccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEE-
Confidence 67888888899998877532 3333 4455556555542 35555554443 2234444433 5667763
Q ss_pred CCcccCCCC--CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHH
Q 007349 376 GDLGAELPI--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPL 453 (607)
Q Consensus 376 GDLg~elg~--e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPv 453 (607)
|+..+-.. .++ .+.+++ ++....|++++ ...-+.. |+..+...|+|++++..---.|+++.
T Consensus 166 -di~~~G~~~g~~~-~~~~~i---~~~~~ipvi~~---------GGi~s~e---di~~l~~~G~~~vivGsal~~g~~~~ 228 (233)
T cd04723 166 -DIDRVGSGQGPDL-ELLERL---AARADIPVIAA---------GGVRSVE---DLELLKKLGASGALVASALHDGGLTL 228 (233)
T ss_pred -EcCccccCCCcCH-HHHHHH---HHhcCCCEEEe---------CCCCCHH---HHHHHHHcCCCEEEEehHHHcCCCCH
Confidence 34332111 122 222333 34568999984 4444444 55566677999999986666677776
Q ss_pred HHH
Q 007349 454 KAV 456 (607)
Q Consensus 454 eaV 456 (607)
+.+
T Consensus 229 ~~~ 231 (233)
T cd04723 229 EDV 231 (233)
T ss_pred HHH
Confidence 543
No 289
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=52.72 E-value=3e+02 Score=28.87 Aligned_cols=155 Identities=15% Similarity=0.121 Sum_probs=86.8
Q ss_pred CCHHhHHHHHhh-HhcCCcEEEec-cCCCh-----hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEE
Q 007349 302 ITDKDWEDIKFG-VDNQVDFYAVS-FVKDA-----KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMV 373 (607)
Q Consensus 302 lt~kD~~dI~~a-l~~gvD~I~~S-fV~sa-----~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImI 373 (607)
++.+++..|..+ .+.|+|.|=+. |+... .|-.++...+... .+..+.+..-+.+++ +..++. .|.|-+
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~-~~~~~~~~~~~~~dv---~~A~~~g~~~i~i 92 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR-PGVRYSALVPNLRGA---ERALAAGVDEVAV 92 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC-CCCEEEEECCCHHHH---HHHHHcCcCEEEE
Confidence 566777666544 57899998664 43221 3433444444432 245555555444443 333333 455433
Q ss_pred --cCCCcc--cCCC--CCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhc-CCC--C-ChHhhhhHHH-HHHhccceEEe
Q 007349 374 --ARGDLG--AELP--IEDVPLLQEDIIRRCRSMQKPVIVATNMLESMID-HPT--P-TRAEVSDIAI-AVREGADAVML 442 (607)
Q Consensus 374 --gRGDLg--~elg--~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~-~~~--P-trAEv~Dv~n-av~~G~D~vmL 442 (607)
.-.|+- ..++ .++....-++.++.++++|+-+.+.-. |.. +|. + +...+.+++. +...|+|.+-|
T Consensus 93 ~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~----~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l 168 (274)
T cd07938 93 FVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVS----TAFGCPYEGEVPPERVAEVAERLLDLGCDEISL 168 (274)
T ss_pred EEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE----eEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 333321 1111 234555566788999999998753211 111 122 1 2333555544 56679999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHH
Q 007349 443 SGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 443 s~ETa~G~yPveaV~~m~~I~~~ 465 (607)
. +|.=.-.|.+.-+.+..+...
T Consensus 169 ~-DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 169 G-DTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred C-CCCCccCHHHHHHHHHHHHHH
Confidence 5 888778899888888777643
No 290
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=52.38 E-value=77 Score=34.62 Aligned_cols=82 Identities=24% Similarity=0.288 Sum_probs=54.6
Q ss_pred hhhHhcHHHHHhh-ccEEEEcCCCcccCCCCC--CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh--hhhH
Q 007349 355 ADSIPNLHSIISA-SDGAMVARGDLGAELPIE--DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE--VSDI 429 (607)
Q Consensus 355 ~~av~NldeIl~~-sDGImIgRGDLg~elg~e--~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE--v~Dv 429 (607)
+..++.+...++. +|.|.+|=-+++.-.... .... .+++++.|+++||-++++.+++= .+..-+ ...+
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~~------~~~~~~~~~~~l 85 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTLL------HNDELETLERYL 85 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEecccc------ccchhhHHHHHH
Confidence 3445556555555 899999955666554431 2333 57788999999999998755321 222222 3456
Q ss_pred HHHHHhccceEEec
Q 007349 430 AIAVREGADAVMLS 443 (607)
Q Consensus 430 ~nav~~G~D~vmLs 443 (607)
..+...|+|++.++
T Consensus 86 ~~l~e~GvDaviv~ 99 (347)
T COG0826 86 DRLVELGVDAVIVA 99 (347)
T ss_pred HHHHHcCCCEEEEc
Confidence 78889999999997
No 291
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=52.21 E-value=2.2e+02 Score=28.53 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHcCCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEEec
Q 007349 398 CRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLS 443 (607)
Q Consensus 398 c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs 443 (607)
++..+.|++.+ ...-+..+ +.. ....|+|+++++
T Consensus 193 ~~~~~ipvia~---------GGi~s~~d---i~~~l~~~gadgV~vg 227 (232)
T TIGR03572 193 SDAVSIPVIAL---------GGAGSLDD---LVEVALEAGASAVAAA 227 (232)
T ss_pred HhhCCCCEEEE---------CCCCCHHH---HHHHHHHcCCCEEEEe
Confidence 44568999984 34444444 444 445699999986
No 292
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.11 E-value=32 Score=36.35 Aligned_cols=65 Identities=14% Similarity=0.131 Sum_probs=44.8
Q ss_pred CHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEE--eecChhhHhcHHHHHhh-ccEEEEcC
Q 007349 303 TDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 303 t~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIA--KIEt~~av~NldeIl~~-sDGImIgR 375 (607)
+-.+.+++..+.+.|+|||++.. -+.+++.++.+.+ +..+.+.| -| -.+|+.++++. +|+|-+|.
T Consensus 194 sv~tleea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~---~~~i~i~AiGGI----t~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 194 ETETEEQVREAVAAGADIIMFDN-RTPDEIREFVKLV---PSAIVTEASGGI----TLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-CCHHHHHHHHHhc---CCCceEEEECCC----CHHHHHHHHHcCCCEEEECh
Confidence 33466777788899999999964 3667776666654 23344333 23 35788888887 99999984
No 293
>PRK08638 threonine dehydratase; Validated
Probab=52.09 E-value=1.8e+02 Score=31.31 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=72.5
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+. .| ...--..+...-..|++.++.. ....++++.+.+++.+.. .++.
T Consensus 89 alA~~aa~~G~~~~iv---------~p--~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~a~~~g-~~~~ 150 (333)
T PRK08638 89 GVALSCALLGIDGKVV---------MP--KGAPKSKVAATCGYGAEVVLHG------DNFNDTIAKVEEIVEEEG-RTFI 150 (333)
T ss_pred HHHHHHHHcCCCEEEE---------eC--CCCcHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhcC-CEEc
Confidence 4556899999999773 22 2222223445567799988752 234678888777776532 2211
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC-C-CEEEEcCChHHHHHHHhc----CCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN-T-PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~-a-~Iiv~T~sG~tA~~is~~----RP~~PIIAvT~d~ 535 (607)
. .|.+. ...+.-..-+.++.++++ . .||+..-+|.+..-++++ .|...||++=|..
T Consensus 151 ~-~~~~~------~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g 212 (333)
T PRK08638 151 P-PYDDP------KVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSEN 212 (333)
T ss_pred C-cCCCc------chhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1 12110 111222334456666664 3 788888999988877765 7999999998864
No 294
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=52.02 E-value=2.1e+02 Score=31.75 Aligned_cols=125 Identities=10% Similarity=0.030 Sum_probs=70.1
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|++.|.++.+- .| ....-..+...-..|++.+...+... -..+-..++...+++++.+..++
T Consensus 76 alA~~a~~~G~~~~iv---------~p--~~~~~~k~~~~~~~GA~v~~~~~~~~-~~~~~~~~~~a~~l~~~~~~~~~- 142 (454)
T TIGR01137 76 GLALVAAIKGYKCIIV---------LP--EKMSNEKVDVLKALGAEIVRTPTAAA-FDSPESHIGVAKRLVREIPGAHI- 142 (454)
T ss_pred HHHHHHHHcCCeEEEE---------eC--CCcCHHHHHHHHHCCCEEEEcCCccC-CCchHHHHHHHHHHHHhCCCcEe-
Confidence 3556899999999772 22 22222245566778999887642110 11222334455555444322211
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHHh----cCCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILSH----YRPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is~----~RP~~PIIAvT~d~ 535 (607)
...|.+ .. .+..-....+.++.++++ . .||+..-+|.|+.-+++ ++|.+.|+++.+..
T Consensus 143 ~~~~~~----~~-~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~ 207 (454)
T TIGR01137 143 LDQYNN----PS-NPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEG 207 (454)
T ss_pred cccCCC----hh-hHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 111111 01 111112334567777775 4 78999999988876654 57999999998854
No 295
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=51.67 E-value=91 Score=34.95 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=25.4
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHH-HHHHHHHHHcCCCEEEE
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQ-EDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~q-k~II~~c~~aGKPviva 408 (607)
.|.|+|+||-=+.| ++...- ..++++..+...|||.|
T Consensus 188 ~dviii~RGGGs~e----DL~~Fn~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 188 CDVLIVGRGGGSLE----DLWSFNDEKVARAIFLSKIPIISA 225 (432)
T ss_pred CCEEEEecCCCCHH----HhhhcCcHHHHHHHHcCCCCEEEe
Confidence 59999999943322 333332 45777778889999976
No 296
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=51.43 E-value=84 Score=28.77 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 332 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 332 v~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
+..+++.+.+.++.+.+.+.-+.. .-++++++++-+|.|+.+-.+ ......+-+.|++.++|+|.+
T Consensus 58 a~~~~~~l~~~np~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~ 123 (135)
T PF00899_consen 58 AEAAKERLQEINPDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDA 123 (135)
T ss_dssp HHHHHHHHHHHSTTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHhcCceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 455778888888888877744443 457888888889988876333 455677888999999998875
No 297
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=51.22 E-value=3.4e+02 Score=30.06 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=71.7
Q ss_pred hhHhcCCcEEEec---cCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh--ccEEEEcCCCccc------
Q 007349 312 FGVDNQVDFYAVS---FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGA------ 380 (607)
Q Consensus 312 ~al~~gvD~I~~S---fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~--sDGImIgRGDLg~------ 380 (607)
..+..|.+.+..+ ...+++++.++-+.+.+.....+|+.|+=..-..+.+...++. +|+|.|.=++=+.
T Consensus 178 r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~ 257 (392)
T cd02808 178 RGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLT 257 (392)
T ss_pred hCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCccc
Confidence 3455677766543 3467777777666676665557899998543233444455543 6999997544222
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHc----CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 381 ---ELPIEDVPLLQEDIIRRCRSM----QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 381 ---elg~e~v~~~qk~II~~c~~a----GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
+.|++ .......+.+.+.+. ..|++.+.- .-+ -.|++.++..|+|++.+.
T Consensus 258 ~~~~~g~p-t~~~L~~v~~~~~~~~~~~~i~viasGG---------I~~---g~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 258 FIDHVGLP-TELGLARAHQALVKNGLRDRVSLIASGG---------LRT---GADVAKALALGADAVGIG 314 (392)
T ss_pred ccccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEECC---------CCC---HHHHHHHHHcCCCeeeec
Confidence 12221 223444555555544 467776432 222 358999999999999875
No 298
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=51.01 E-value=2.5e+02 Score=29.80 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=41.3
Q ss_pred HHHHhhHhcCCcEEEe------------------ccCCChhHHHHHHHHHHh-cCCCceEEEeecCh-------hhHhcH
Q 007349 308 EDIKFGVDNQVDFYAV------------------SFVKDAKVVHELKDYLKS-CNADIHVIVKIESA-------DSIPNL 361 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~------------------SfV~sa~dv~~vr~~l~~-~~~~i~IIAKIEt~-------~av~Nl 361 (607)
+.++...+.|+.+|.+ ..+...+.+..++..... .+.++.|+|..|.. ++++..
T Consensus 96 r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra 175 (285)
T TIGR02320 96 RLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRA 175 (285)
T ss_pred HHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHH
Confidence 4455566788888877 223333334445555444 46679999997765 444444
Q ss_pred HHHHhh-ccEEEEc
Q 007349 362 HSIISA-SDGAMVA 374 (607)
Q Consensus 362 deIl~~-sDGImIg 374 (607)
..-.++ +|+||+-
T Consensus 176 ~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 176 EAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHcCCCEEEec
Confidence 444444 8999994
No 299
>PRK07476 eutB threonine dehydratase; Provisional
Probab=50.88 E-value=1.9e+02 Score=30.75 Aligned_cols=118 Identities=9% Similarity=0.070 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|++.|.|+.+. .| ..+.-..+...-..|++.+... ...-++++...+++.+-. ..+.
T Consensus 81 alA~~a~~~G~~~~i~---------vp--~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~~~~~g-~~~~ 142 (322)
T PRK07476 81 ALAYAARALGIRATIC---------MS--RLVPANKVDAIRALGAEVRIVG------RSQDDAQAEVERLVREEG-LTMV 142 (322)
T ss_pred HHHHHHHHhCCCEEEE---------eC--CCCCHHHHHHHHHcCCEEEEEC------CCHHHHHHHHHHHHHhcC-CEEe
Confidence 4566899999998773 22 2222234556677899977653 234577777776654421 1111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
.+ +.+. ...+.....+.++.++++- .||+.+-+|.++--++ .+.|...||++-+..
T Consensus 143 ~~-~~n~------~~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~ 204 (322)
T PRK07476 143 PP-FDDP------RIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMER 204 (322)
T ss_pred CC-CCCc------ceeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 1110 1112223455678787754 5888999998866555 467999999999863
No 300
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=50.81 E-value=2.4e+02 Score=30.55 Aligned_cols=130 Identities=21% Similarity=0.221 Sum_probs=66.2
Q ss_pred HhHHHHHhhHhcCCcEEEeccC----------CChhHHHHHHHHHHhc-CC---CceEEEeecChhhHhcHHHHHhh---
Q 007349 305 KDWEDIKFGVDNQVDFYAVSFV----------KDAKVVHELKDYLKSC-NA---DIHVIVKIESADSIPNLHSIISA--- 367 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~SfV----------~sa~dv~~vr~~l~~~-~~---~i~IIAKIEt~~av~NldeIl~~--- 367 (607)
.|...+..-+..++|++-+.|- +..+.+.++-+.+.+. +. +++|++||----..+++.++++.
T Consensus 157 ~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~ 236 (344)
T PRK05286 157 DDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALE 236 (344)
T ss_pred HHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 4543333323346998877642 1223333332222221 11 48999999632222345555543
Q ss_pred --ccEEEEcCC-----Cccc-----CC-CCC---CHHHHHHHHHHHHHHc--CCCEEEEcccchhhhcCCCCChHhhhhH
Q 007349 368 --SDGAMVARG-----DLGA-----EL-PIE---DVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDI 429 (607)
Q Consensus 368 --sDGImIgRG-----DLg~-----el-g~e---~v~~~qk~II~~c~~a--GKPvivaTqmLeSM~~~~~PtrAEv~Dv 429 (607)
+|||.+-=. |+.. .. |+. .-+...+.+-+..++. +.|++-. ...-+. .|+
T Consensus 237 ~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~---------GGI~s~---eda 304 (344)
T PRK05286 237 HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGV---------GGIDSA---EDA 304 (344)
T ss_pred hCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEE---------CCCCCH---HHH
Confidence 699887522 1110 01 111 1223334444444444 5787763 333333 467
Q ss_pred HHHHHhccceEEecccc
Q 007349 430 AIAVREGADAVMLSGET 446 (607)
Q Consensus 430 ~nav~~G~D~vmLs~ET 446 (607)
..++..|+|+|++..-.
T Consensus 305 ~e~l~aGAd~V~v~~~~ 321 (344)
T PRK05286 305 YEKIRAGASLVQIYSGL 321 (344)
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 78888999999997444
No 301
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=50.69 E-value=2.9e+02 Score=28.19 Aligned_cols=130 Identities=17% Similarity=0.222 Sum_probs=68.6
Q ss_pred hHHHHHhhHhcCCcEEEec--cCCChhHHHHHHHHHHhcCCCceEEEeec---------------------ChhhHhcHH
Q 007349 306 DWEDIKFGVDNQVDFYAVS--FVKDAKVVHELKDYLKSCNADIHVIVKIE---------------------SADSIPNLH 362 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~S--fV~sa~dv~~vr~~l~~~~~~i~IIAKIE---------------------t~~av~Nld 362 (607)
+.+|++..+..|++.+.++ +.++++.+.++.+.+ +++ .+++-+. ....++-++
T Consensus 85 s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~---g~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (253)
T PRK02083 85 SVEDARRLLRAGADKVSINSAAVANPELISEAADRF---GSQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAK 160 (253)
T ss_pred CHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHc---CCC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHH
Confidence 4456666677899988775 345666666555544 322 1222221 011122223
Q ss_pred HHHhh-ccEEEEcCCC-cccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHH-hccce
Q 007349 363 SIISA-SDGAMVARGD-LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADA 439 (607)
Q Consensus 363 eIl~~-sDGImIgRGD-Lg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~ 439 (607)
++.+. +|.+++-.-+ =|..-|+ ++ ..+-+.++..+.|+|.+ ...-+. .|+..+.. .|+|+
T Consensus 161 ~~~~~g~~~ii~~~i~~~g~~~g~-d~----~~i~~~~~~~~ipvia~---------GGv~s~---~d~~~~~~~~G~~g 223 (253)
T PRK02083 161 EVEELGAGEILLTSMDRDGTKNGY-DL----ELTRAVSDAVNVPVIAS---------GGAGNL---EHFVEAFTEGGADA 223 (253)
T ss_pred HHHHcCCCEEEEcCCcCCCCCCCc-CH----HHHHHHHhhCCCCEEEE---------CCCCCH---HHHHHHHHhCCccE
Confidence 33333 6777663211 1122222 22 22233345568999984 333333 45666665 59999
Q ss_pred EEecccccCCCCHHHHH
Q 007349 440 VMLSGETAHGKFPLKAV 456 (607)
Q Consensus 440 vmLs~ETa~G~yPveaV 456 (607)
+|.+.=--.|.++.+.+
T Consensus 224 vivg~al~~~~~~~~~~ 240 (253)
T PRK02083 224 ALAASIFHFGEITIGEL 240 (253)
T ss_pred EeEhHHHHcCCCCHHHH
Confidence 99975555788887654
No 302
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=50.48 E-value=34 Score=36.33 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=47.3
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhH--hcHHHHHhh-ccEEEEc
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVA 374 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av--~NldeIl~~-sDGImIg 374 (607)
..+++..+++.|+|.|.+=.. +++++.++.+++.+.+.++ ++|-.-|+ +|+.++++. +|.|.+|
T Consensus 198 tleqa~ea~~agaDiI~LDn~-~~e~l~~av~~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~g 264 (284)
T PRK06096 198 TPKEAIAALRAQPDVLQLDKF-SPQQATEIAQIAPSLAPHC----TLSLAGGINLNTLKNYADCGIRLFITS 264 (284)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCe----EEEEECCCCHHHHHHHHhcCCCEEEEC
Confidence 456777889999999999654 8899999888876544443 35544443 577777777 8999887
No 303
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=50.33 E-value=1.4e+02 Score=31.56 Aligned_cols=119 Identities=17% Similarity=0.212 Sum_probs=77.4
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-EEcccc--hhhhcCC
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNML--ESMIDHP 419 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqmL--eSM~~~~ 419 (607)
..++|...+.+..-.+.+..-++. .+.||+... .+|+++=...-+++++.|++.|.+|= =--.+- |.-....
T Consensus 68 ~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S----~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~ 143 (276)
T cd00947 68 ASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGS----HLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGD 143 (276)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccc
Confidence 368899999998765555444444 789999743 45777777888999999999999872 111110 0000000
Q ss_pred CCChHhhhhHHHHHH-hccceEEecccccCCCCHH----HHHHHHHHHHHHh
Q 007349 420 TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL----KAVKVMHTVALRT 466 (607)
Q Consensus 420 ~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~yPv----eaV~~m~~I~~~a 466 (607)
.-......+...++. -|+|++..|--|+.|.|+- -=.+.|.+|...+
T Consensus 144 ~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 144 EGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred cccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 000111344557776 4999999999999999964 4456666666665
No 304
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=50.30 E-value=97 Score=32.34 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=54.8
Q ss_pred HHHHhh-ccEEEEcCCCcc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh-hhhHHHHHHhcc
Q 007349 362 HSIISA-SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGA 437 (607)
Q Consensus 362 deIl~~-sDGImIgRGDLg--~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~ 437 (607)
+..++. +||+++. |--| ..+..++-..+.+..++.++ ...||++. ....+-.| +.-.-.|-..|+
T Consensus 26 ~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~g---------v~~~s~~~~i~~a~~a~~~Ga 94 (285)
T TIGR00674 26 DFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAG---------TGSNATEEAISLTKFAEDVGA 94 (285)
T ss_pred HHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEe---------CCCccHHHHHHHHHHHHHcCC
Confidence 333443 8999983 2111 22333343333344444332 24677763 23333344 555567788899
Q ss_pred ceEEecccccCCCCHHHHHHHHHHHHHHhh
Q 007349 438 DAVMLSGETAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 438 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 467 (607)
|++|+..=.-...-+-+.+++...|+.+++
T Consensus 95 d~v~v~pP~y~~~~~~~i~~~~~~i~~~~~ 124 (285)
T TIGR00674 95 DGFLVVTPYYNKPTQEGLYQHFKAIAEEVD 124 (285)
T ss_pred CEEEEcCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 999998655443345778899999988775
No 305
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=50.30 E-value=2.2e+02 Score=30.35 Aligned_cols=97 Identities=12% Similarity=0.178 Sum_probs=56.5
Q ss_pred HHHHhhHhcCCcEEEec------cCCChhHHHH-HHHHHHhcCCCceEEEeec---ChhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVS------FVKDAKVVHE-LKDYLKSCNADIHVIVKIE---SADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~S------fV~sa~dv~~-vr~~l~~~~~~i~IIAKIE---t~~av~NldeIl~~-sDGImIgRG 376 (607)
+.+++.+++|+++|.+. +.=+.++-.+ ++...+..+.+++||+-+= |.++++....-.+. +|++|+-+-
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P 112 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRP 112 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 55578889999998763 1122333333 3444555677899999884 45555555555544 899999754
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 408 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~a-GKPviva 408 (607)
..-. ..-+.+...-+.| |.+. +.|+++.
T Consensus 113 ~y~~-~~~~~l~~yf~~v---a~a~~~lPv~iY 141 (309)
T cd00952 113 MWLP-LDVDTAVQFYRDV---AEAVPEMAIAIY 141 (309)
T ss_pred cCCC-CCHHHHHHHHHHH---HHhCCCCcEEEE
Confidence 3210 1113333333444 5556 6899884
No 306
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=50.21 E-value=1.8e+02 Score=31.41 Aligned_cols=118 Identities=13% Similarity=0.174 Sum_probs=75.7
Q ss_pred CceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCE-EEEcccc---hhhhcCC
Q 007349 345 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPV-IVATNML---ESMIDHP 419 (607)
Q Consensus 345 ~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPv-ivaTqmL---eSM~~~~ 419 (607)
.++|...+.+..-++.+.+-++. .+-||+.- -.+|+++=...-+++++.|+++|..| .=-.++- +......
T Consensus 74 ~VPValHLDHg~~~e~i~~ai~~GftSVM~Dg----S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (307)
T PRK05835 74 HIPVALHLDHGTTFESCEKAVKAGFTSVMIDA----SHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDE 149 (307)
T ss_pred CCeEEEECCCCCCHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccc
Confidence 48899999988766666555554 78999973 35677777788899999999999987 1111110 1100000
Q ss_pred -CCChHhhhhHHHHHH-hccceEEecccccCCCCH-----HHHHHHHHHHHHHh
Q 007349 420 -TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFP-----LKAVKVMHTVALRT 466 (607)
Q Consensus 420 -~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~yP-----veaV~~m~~I~~~a 466 (607)
.-..-...+...++. -|+|++-.+--|+.|.|+ .--.+.|.+|....
T Consensus 150 ~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~ 203 (307)
T PRK05835 150 KDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT 203 (307)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh
Confidence 000111234557775 499999999999999996 23445555554443
No 307
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=50.16 E-value=1.1e+02 Score=31.96 Aligned_cols=95 Identities=15% Similarity=0.044 Sum_probs=53.0
Q ss_pred HHHHHhh--ccEEEEcC--CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh-hhhHHHHHHh
Q 007349 361 LHSIISA--SDGAMVAR--GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVRE 435 (607)
Q Consensus 361 ldeIl~~--sDGImIgR--GDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav~~ 435 (607)
++..++. +||+++.= |+. ..+..++-..+-+..++.+. ...|+++ .....+-.| +...-.+...
T Consensus 27 i~~l~~~~Gv~gi~~~GstGE~-~~Lt~~Er~~~~~~~~~~~~-~~~~via---------gv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 27 VDYLIEKQGVDGLYVNGSTGEG-FLLSVEERKQIAEIVAEAAK-GKVTLIA---------HVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred HHHHHhcCCCCEEEECcCCcCc-ccCCHHHHHHHHHHHHHHhC-CCCeEEe---------ccCCCCHHHHHHHHHHHHHc
Confidence 3444454 79998851 111 12222232222233333322 2357776 333344445 4555678899
Q ss_pred ccceEEecccccCCCCHHHHHHHHHHHHHHh
Q 007349 436 GADAVMLSGETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 436 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~a 466 (607)
|+|++|+..---...-+-+.+++...|+..+
T Consensus 96 Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 96 GYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999998654433334578899999998876
No 308
>PRK10717 cysteine synthase A; Provisional
Probab=49.55 E-value=2e+02 Score=30.57 Aligned_cols=127 Identities=13% Similarity=0.077 Sum_probs=69.5
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+.+|.|+.+- .|..+ .-..+...-..|++.+...+. . ...|-..++...+++.+.+.....
T Consensus 78 alA~~a~~~G~~~~vv---------~p~~~--~~~k~~~~~~~GA~V~~~~~~-~-~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 78 GLALVAAARGYKTVIV---------MPETQ--SQEKKDLLRALGAELVLVPAA-P-YANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHHcCCcEEEE---------eCCCC--CHHHHHHHHHcCCEEEEeCCc-c-cccccchHHHHHHHHHHHHhhCCC
Confidence 3456789999999773 22222 222345666789998877532 0 011122344444555554322111
Q ss_pred CCCCCCccccCCCC--hhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSH--MGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~--~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
...+... +.+. ...-...-+.++.++++ . .||+..-+|.++.-++ .++|++.|+++-+..
T Consensus 145 ~~~~~~~---~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~ 213 (330)
T PRK10717 145 GAIWANQ---FDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTG 213 (330)
T ss_pred CeEecCC---CCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 1111111 1111 11112234567788886 4 6888888888776555 457999999998854
No 309
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=49.49 E-value=2.5e+02 Score=30.64 Aligned_cols=133 Identities=12% Similarity=0.093 Sum_probs=79.9
Q ss_pred CCCCCCHHhHHHHHhhHhcCCcEEEeccCCCh---------------hHHHHHHHHHHhcCCCceEEEeec------C-h
Q 007349 298 NLPSITDKDWEDIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIVKIE------S-A 355 (607)
Q Consensus 298 ~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa---------------~dv~~vr~~l~~~~~~i~IIAKIE------t-~ 355 (607)
.+-.+|-+|.--.+.+-+.|+|.|.+. .|. ++...--+.+.+.-.+..+++=++ + .
T Consensus 36 kivmlTAyD~~sA~i~d~aGvD~ILVG--DSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e 113 (332)
T PLN02424 36 PITMVTAYDYPSAVHVDSAGIDVCLVG--DSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTD 113 (332)
T ss_pred cEEEEecCCHHHHHHHHHcCCCEEEEC--CcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHH
Confidence 456678888877777778899998875 222 222221222333334566675553 3 4
Q ss_pred hhHhcHHHHHhh--ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE----EEcccchhhh---cCC-CCChHh
Q 007349 356 DSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI----VATNMLESMI---DHP-TPTRAE 425 (607)
Q Consensus 356 ~av~NldeIl~~--sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi----vaTqmLeSM~---~~~-~PtrAE 425 (607)
++++|...+++. +|+|=+--|. ..+-.+|++..++|+||+ +.-|-...|- ... ....++
T Consensus 114 ~av~nA~rl~~eaGa~aVKlEGg~-----------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~ 182 (332)
T PLN02424 114 QAVESAVRMLKEGGMDAVKLEGGS-----------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAV 182 (332)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCc-----------HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHH
Confidence 789999999864 7888884332 122345555569999998 6555444442 122 223332
Q ss_pred --hhhHHHHHHhccceEEec
Q 007349 426 --VSDIAIAVREGADAVMLS 443 (607)
Q Consensus 426 --v~Dv~nav~~G~D~vmLs 443 (607)
+.|.--.-..|+++++|-
T Consensus 183 ~li~dA~ale~AGAf~ivLE 202 (332)
T PLN02424 183 KVVETALALQEAGCFAVVLE 202 (332)
T ss_pred HHHHHHHHHHHcCCcEEEEc
Confidence 445555557899999984
No 310
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=49.37 E-value=1.3e+02 Score=34.07 Aligned_cols=95 Identities=8% Similarity=0.011 Sum_probs=57.2
Q ss_pred HhcHHHHHhh----ccEEEEcCC-------CcccCCCCCCHHHHHHHHH--HHHHHcCCCEEEEcccchhhhcCCCCChH
Q 007349 358 IPNLHSIISA----SDGAMVARG-------DLGAELPIEDVPLLQEDII--RRCRSMQKPVIVATNMLESMIDHPTPTRA 424 (607)
Q Consensus 358 v~NldeIl~~----sDGImIgRG-------DLg~elg~e~v~~~qk~II--~~c~~aGKPvivaTqmLeSM~~~~~PtrA 424 (607)
..+.+|+..+ +|.|.+|+- +-...+|++.+..+++.+- ..++..++|++.- -.-.+
T Consensus 307 tHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI--------GGI~~--- 375 (437)
T PRK12290 307 THGYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI--------GGIDQ--- 375 (437)
T ss_pred cCCHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEE--------CCcCH---
Confidence 4566666654 699999963 1122234344433333221 1123357898652 12222
Q ss_pred hhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 425 EVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 425 Ev~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
.++......|+|++-+.+.-..-..|.++++.+.++...
T Consensus 376 --~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~ 414 (437)
T PRK12290 376 --SNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAE 414 (437)
T ss_pred --HHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhh
Confidence 345577788999999887766667899999998887543
No 311
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=49.33 E-value=3.1e+02 Score=29.70 Aligned_cols=125 Identities=16% Similarity=0.201 Sum_probs=64.9
Q ss_pred CCCCHHhHHHH--------HhhHhcCCcEEEeccCC-------------ChhH------------HHHHHHHHH-hcCCC
Q 007349 300 PSITDKDWEDI--------KFGVDNQVDFYAVSFVK-------------DAKV------------VHELKDYLK-SCNAD 345 (607)
Q Consensus 300 p~lt~kD~~dI--------~~al~~gvD~I~~SfV~-------------sa~d------------v~~vr~~l~-~~~~~ 345 (607)
..+|..|++.+ +.+.+.|+|+|-+.+.. ...| +.++-+-++ ..+.+
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d 219 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD 219 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC
Confidence 35788888766 34557899999664322 2211 112222222 23555
Q ss_pred ceEEEeecChhh---------HhcHHHHHhh-----ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHH-HcCCCEEEEcc
Q 007349 346 IHVIVKIESADS---------IPNLHSIISA-----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-SMQKPVIVATN 410 (607)
Q Consensus 346 i~IIAKIEt~~a---------v~NldeIl~~-----sDGImIgRGDLg~elg~e~v~~~qk~II~~c~-~aGKPvivaTq 410 (607)
.|..||-..+. .+..-+|++. .|.|=|..|...... ........+..+ ..++||+....
T Consensus 220 -~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-----~~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 220 -RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-----EDQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred -ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----cccchHHHHHHHHHcCCCEEEECC
Confidence 48888843321 1222233332 588888666443221 111222222222 34899988533
Q ss_pred cchhhhcCCCCChHhhhhHHHHHHhc-cceEEec
Q 007349 411 MLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLS 443 (607)
Q Consensus 411 mLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs 443 (607)
+ .|..+| .++..| +|+|++.
T Consensus 294 i--------~~~~a~-----~~l~~g~~D~V~~g 314 (338)
T cd02933 294 Y--------DAESAE-----AALADGKADLVAFG 314 (338)
T ss_pred C--------CHHHHH-----HHHHcCCCCEEEeC
Confidence 1 144444 777776 9999986
No 312
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=49.31 E-value=1.3e+02 Score=32.82 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCcccCCCC-CCHHHHHHHHHHHHHHc
Q 007349 327 KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPI-EDVPLLQEDIIRRCRSM 401 (607)
Q Consensus 327 ~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDLg~elg~-e~v~~~qk~II~~c~~a 401 (607)
.+.+++..+++.. +.+||.| ++.+.+++..+ +|+|.+. +--|..+.. .....+...+....++.
T Consensus 200 ~~~~~i~~l~~~~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 200 LTWDDIKWLRKHT-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCHHHHHHHHHhc-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 3556666666543 5678888 33344444433 7998886 222444321 12233444554444343
Q ss_pred --CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 402 --QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 402 --GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
..|+|.+.- . ..-.|++.++..|+|++++.
T Consensus 269 ~~~~~vi~~GG---------I---r~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 269 FDKIEVYVDGG---------V---RRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCceEEEeCC---------C---CCHHHHHHHHHcCCCEEEEC
Confidence 378777422 1 22568999999999999975
No 313
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=49.23 E-value=13 Score=40.13 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=14.3
Q ss_pred hhHhcCCcEEEeccCCChhHH
Q 007349 312 FGVDNQVDFYAVSFVKDAKVV 332 (607)
Q Consensus 312 ~al~~gvD~I~~SfV~sa~dv 332 (607)
.+.+.|+++|. |||.+-.|+
T Consensus 164 aaa~AGa~~IS-PFVgRi~dw 183 (317)
T TIGR00874 164 ACAEAKVTLIS-PFVGRILDW 183 (317)
T ss_pred HHHHcCCCEEE-eecchHhHh
Confidence 34567998775 799877664
No 314
>PLN02550 threonine dehydratase
Probab=49.10 E-value=1.9e+02 Score=34.05 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=74.0
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.++.+. .|..+. ...+...-..|++.++. |...-++.+...+++.+ +...+.
T Consensus 171 gvA~aA~~lGika~Iv---------mP~~tp--~~Kv~~~r~~GAeVvl~------g~~~dea~~~A~~la~e-~g~~fi 232 (591)
T PLN02550 171 GVALSAQRLGCDAVIA---------MPVTTP--EIKWQSVERLGATVVLV------GDSYDEAQAYAKQRALE-EGRTFI 232 (591)
T ss_pred HHHHHHHHcCCCEEEE---------ECCCCC--HHHHHHHHHcCCEEEEe------CCCHHHHHHHHHHHHHh-cCCEEE
Confidence 4556799999998772 222222 22344556789987776 23355777777766654 222111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHHHHh
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQERIKQ 539 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~~taR 539 (607)
..|.+ ......-..-+.++.++++ . .|||..-+|.++--++ .++|...||++-+...-+-
T Consensus 233 -~pfdd------p~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~ 299 (591)
T PLN02550 233 -PPFDH------PDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAM 299 (591)
T ss_pred -CCCCC------hHHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHH
Confidence 11111 1122233344668888876 4 7899998888765555 5679999999999654333
No 315
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=48.69 E-value=3.6e+02 Score=30.00 Aligned_cols=124 Identities=15% Similarity=0.152 Sum_probs=69.1
Q ss_pred CCCCCHHhH-HHHHhhHhcCCcEEEeccCC-ChhHHHHHHHHHHhcCCCceEEEeecChh-hHhcHHHHHhh-ccEEEE-
Q 007349 299 LPSITDKDW-EDIKFGVDNQVDFYAVSFVK-DAKVVHELKDYLKSCNADIHVIVKIESAD-SIPNLHSIISA-SDGAMV- 373 (607)
Q Consensus 299 lp~lt~kD~-~dI~~al~~gvD~I~~SfV~-sa~dv~~vr~~l~~~~~~i~IIAKIEt~~-av~NldeIl~~-sDGImI- 373 (607)
+..++..+. +.++.+++.|+++|-..+-. +.+....++++.+..+ ...++.-+.... +-..++...+. +|++.+
T Consensus 10 lD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~-~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~ 88 (430)
T PRK07028 10 LDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP-DHTIVADMKTMDTGAIEVEMAAKAGADIVCIL 88 (430)
T ss_pred eccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC-CCEEEEEeeeccchHHHHHHHHHcCCCEEEEe
Confidence 334555555 44456688999998653211 2334445555554432 344553322211 33356666665 899986
Q ss_pred cCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 374 ARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 374 gRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
+-.| + ...+++++.|+++|.++++.. . ..+|.. ..+..+...|+|.+.+.
T Consensus 89 g~~~--------~--~~~~~~i~~a~~~G~~~~~g~-------~-s~~t~~--e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 89 GLAD--------D--STIEDAVRAARKYGVRLMADL-------I-NVPDPV--KRAVELEELGVDYINVH 138 (430)
T ss_pred cCCC--------h--HHHHHHHHHHHHcCCEEEEEe-------c-CCCCHH--HHHHHHHhcCCCEEEEE
Confidence 3211 1 113678899999999988620 1 112322 23456677899999765
No 316
>PRK08639 threonine dehydratase; Validated
Probab=48.59 E-value=2.1e+02 Score=31.85 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+- - |..+-...+...-..|++.+.+- ..|...-++++.-.+++.+- ..++.
T Consensus 87 alA~~a~~~G~~~~Iv---------m--P~~~~~~k~~~~r~~GA~vv~v~---~~g~~~~~a~~~a~~~a~~~-g~~~~ 151 (420)
T PRK08639 87 GVAYACRHLGIPGVIF---------M--PVTTPQQKIDQVRFFGGEFVEIV---LVGDTFDDSAAAAQEYAEET-GATFI 151 (420)
T ss_pred HHHHHHHHcCCCEEEE---------E--CCCChHHHHHHHHHcCCCeeEEE---EeCcCHHHHHHHHHHHHHhc-CCccc
Confidence 4566899999999773 2 22222233445667799843221 02455667777766665442 22221
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC----C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN----T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~----a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
. .|.+. ...+.-..-+.++.++++ . .||+..-+|.++.-++ .++|.+.||++-|..
T Consensus 152 ~-~~~~~------~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~ 216 (420)
T PRK08639 152 P-PFDDP------DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAG 216 (420)
T ss_pred C-CCCCh------hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1 12110 111111223556667664 5 6888888887765555 447999999998864
No 317
>PRK06801 hypothetical protein; Provisional
Probab=48.59 E-value=1.7e+02 Score=31.09 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=76.0
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCC--C
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP--T 420 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~--~ 420 (607)
..+++.....+..-++.+++-++. .+.||+.-- .+++++-...-+++.+.|+.+|.+|=..=..+-.....+ .
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S----~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~ 148 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS----TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYG 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccC
Confidence 468899999887767666666665 799999533 346667777788999999999998722111111110000 0
Q ss_pred C----ChHhhhhHHHHH-HhccceEEecccccCCCCHH---HHHHHHHHHHHH
Q 007349 421 P----TRAEVSDIAIAV-REGADAVMLSGETAHGKFPL---KAVKVMHTVALR 465 (607)
Q Consensus 421 P----trAEv~Dv~nav-~~G~D~vmLs~ETa~G~yPv---eaV~~m~~I~~~ 465 (607)
+ ......+...++ ..|+|.+-++--|+.|+|+- .-.+.+..|...
T Consensus 149 ~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~ 201 (286)
T PRK06801 149 EADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQ 201 (286)
T ss_pred CcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHh
Confidence 0 011123455666 68999999999999999964 245556666443
No 318
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=48.48 E-value=46 Score=33.82 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=40.3
Q ss_pred HHhhHhcCCcEEEeccCCChhH--------HHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEc
Q 007349 310 IKFGVDNQVDFYAVSFVKDAKV--------VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVA 374 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~sa~d--------v~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIg 374 (607)
...|.+.|++||+ |||.+.+| +.+++++++..+.+.+|++ .+++|.+++++. +|.+-+.
T Consensus 115 a~~Aa~aGa~yis-pyvgRi~d~g~dg~~~v~~~~~~~~~~~~~tkIla-----AS~r~~~~v~~~~~~G~d~vTip 185 (213)
T TIGR00875 115 ALLAAKAGATYVS-PFVGRLDDIGGDGMKLIEEVKTIFENHAPDTEVIA-----ASVRHPRHVLEAALIGADIATMP 185 (213)
T ss_pred HHHHHHcCCCEEE-eecchHHHcCCCHHHHHHHHHHHHHHcCCCCEEEE-----eccCCHHHHHHHHHcCCCEEEcC
Confidence 3446677999876 79988877 4456666766677777776 577777777753 5555543
No 319
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=48.44 E-value=2.2e+02 Score=29.96 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=54.6
Q ss_pred HHHHhhHhcCCcEEEec------cCCChhHHHHH-HHHHHhcCCCceEEEeecChhhHhcHHHHHhh-----ccEEEEcC
Q 007349 308 EDIKFGVDNQVDFYAVS------FVKDAKVVHEL-KDYLKSCNADIHVIVKIESADSIPNLHSIISA-----SDGAMVAR 375 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~S------fV~sa~dv~~v-r~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-----sDGImIgR 375 (607)
+.+++.++.|+|+|.+. +-=|.++-.++ +...+..+.++.||+-+-+ +.+..-+.++. +|++|+-+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEECC
Confidence 55578889999998763 22233443333 3345555667889998842 24433333333 79999976
Q ss_pred CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 376 GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 376 GDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
--+.. ..-+.+...-+.| |.+.+.|+++.
T Consensus 108 P~y~~-~s~~~i~~~f~~v---~~a~~~pvilY 136 (296)
T TIGR03249 108 PYLIN-GEQEGLYAHVEAV---CESTDLGVIVY 136 (296)
T ss_pred CCCCC-CCHHHHHHHHHHH---HhccCCCEEEE
Confidence 43311 1113344444444 44567999884
No 320
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=48.39 E-value=53 Score=35.41 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=41.0
Q ss_pred HhhHhcCCcEEEeccCCChh-------HHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh--ccEEEEcCCCcc
Q 007349 311 KFGVDNQVDFYAVSFVKDAK-------VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLG 379 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa~-------dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~--sDGImIgRGDLg 379 (607)
+.+.+.|++.+.+ +.|++. |+..+++.-+... +++||+-=+ ....+...+.++. +||+|||||=|+
T Consensus 159 ~~~~~~g~~~ltV-HgRtr~~~y~~~ad~~~I~~vk~~~~-~ipvi~NGd-I~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 159 RILEDAGADALTV-HGRTRAQGYLGPADWDYIKELKEAVP-SIPVIANGD-IKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHhcCCCEEEE-ecccHHhcCCCccCHHHHHHHHHhCC-CCeEEeCCC-cCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 3445779999887 666654 3444444333322 377777211 1245566777776 799999998775
No 321
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=48.34 E-value=2e+02 Score=31.84 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+. .|...-...+.+.-..|++.+... ...-++++...+++.+-. .+..
T Consensus 127 alA~~aa~~Gi~~~Iv-----------vP~~~~~~K~~~ir~~GAeVi~~~------~~~~~a~~~a~~~a~~~g-~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY-----------MPKGSAQIRLENIRAEGAECTITD------LNYDDAVRLAWKMAQENG-WVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCcHHHHHHHHhcCCEEEEEC------CCHHHHHHHHHHHHHhcC-cEee
Confidence 3566899999999773 222222345567788999987763 235578888888765422 2211
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC-----C--CEEEEcCChHHHHHHHh-----cCCCCe-EEEEeCC
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN-----T--PIIVFTRTGSMAVILSH-----YRPSST-IFAFTNQ 534 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~-----a--~Iiv~T~sG~tA~~is~-----~RP~~P-IIAvT~d 534 (607)
................+...--+.++.++++ . .||+.+-+|.++--++. ++|..| |+++-|.
T Consensus 189 ~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~ 263 (396)
T TIGR03528 189 QDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPD 263 (396)
T ss_pred ccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccC
Confidence 1100000000001122223334556777765 3 57777777875544443 366664 8999885
No 322
>PRK08185 hypothetical protein; Provisional
Probab=48.32 E-value=2.1e+02 Score=30.47 Aligned_cols=119 Identities=15% Similarity=0.259 Sum_probs=78.3
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccch----hhhcC
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLE----SMIDH 418 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLe----SM~~~ 418 (607)
..++|...+.+..-++.+..-++. .+.||+.--+| ++++-...-+++++.|+++|.++=.-=-.+- .....
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l----~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLL----PYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 468899999998876666666655 68899975554 6778888889999999999999721100010 00000
Q ss_pred CCC-ChHhhhhHHHHHHh-ccceEEecccccCCCCHH-----HHHHHHHHHHHHh
Q 007349 419 PTP-TRAEVSDIAIAVRE-GADAVMLSGETAHGKFPL-----KAVKVMHTVALRT 466 (607)
Q Consensus 419 ~~P-trAEv~Dv~nav~~-G~D~vmLs~ETa~G~yPv-----eaV~~m~~I~~~a 466 (607)
... ..-...+...++.. |+|++-.+--|+.|.||- --++.+.+|....
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~ 197 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV 197 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh
Confidence 000 01123344678876 999999999999999964 2456666665443
No 323
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=48.22 E-value=1.9e+02 Score=30.28 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=67.5
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEE--EcCCCcccCCCC-
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAM--VARGDLGAELPI- 384 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGIm--IgRGDLg~elg~- 384 (607)
+-++.+.+.|+|++.+|=. ..++..++.+.+.+.|-+ .|..+=...--+.+..|.+.+.|.+ +++ .|+ .|.
T Consensus 108 ~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~--~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~ 181 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLD--LIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGAR 181 (258)
T ss_pred HHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcc
Confidence 3456777889999988744 245666666666665543 3333322223567888888877754 344 332 232
Q ss_pred CCHHHHHHHHHHHHHHc-CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 385 EDVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 385 e~v~~~qk~II~~c~~a-GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
...+.-....++.++++ ++|+++. ...-+..++. .+.. ++|++...
T Consensus 182 ~~~~~~~~~~i~~vk~~~~~pv~vG---------fGI~~~e~v~---~~~~-~ADGviVG 228 (258)
T PRK13111 182 SADAADLAELVARLKAHTDLPVAVG---------FGISTPEQAA---AIAA-VADGVIVG 228 (258)
T ss_pred cCCCccHHHHHHHHHhcCCCcEEEE---------cccCCHHHHH---HHHH-hCCEEEEc
Confidence 12333344555555554 8999873 4444444433 4343 58998875
No 324
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=47.95 E-value=1.7e+02 Score=31.17 Aligned_cols=118 Identities=14% Similarity=0.238 Sum_probs=74.7
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-EEcccc---hhhhcC
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNML---ESMIDH 418 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqmL---eSM~~~ 418 (607)
..++|...+.+...++.+..-++. .+.||+.. -.+|+++=...-+++++.|++.|..|= =-.++- +.....
T Consensus 73 ~~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg----S~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~ 148 (286)
T PRK12738 73 YNMPLALHLDHHESLDDIRRKVHAGVRSAMIDG----SHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVD 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEeecC----CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccc
Confidence 368899999888876666555544 68999974 346777777888999999999999871 101110 100000
Q ss_pred CCC-ChHhhhhHHHHHH-hccceEEecccccCCCCHH---HHHHHHHHHHHH
Q 007349 419 PTP-TRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL---KAVKVMHTVALR 465 (607)
Q Consensus 419 ~~P-trAEv~Dv~nav~-~G~D~vmLs~ETa~G~yPv---eaV~~m~~I~~~ 465 (607)
... ..-...+...++. -|+|++-.+--|+.|.|+- --...|.+|...
T Consensus 149 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~ 200 (286)
T PRK12738 149 AESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREV 200 (286)
T ss_pred cchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHH
Confidence 000 0111234456675 4999999999999999962 334455555443
No 325
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=47.91 E-value=2.8e+02 Score=27.24 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=60.3
Q ss_pred HhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCC---Cc---ccCCCC
Q 007349 311 KFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARG---DL---GAELPI 384 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRG---DL---g~elg~ 384 (607)
..+.+.++|+|-+..-++.+.+.++++.+ +.++.....+-+..-.+.....-..+|.+++.-. +. |...++
T Consensus 67 ~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~---~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~ 143 (203)
T cd00405 67 EIAEELGLDVVQLHGDESPEYCAQLRARL---GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDW 143 (203)
T ss_pred HHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceECh
Confidence 45667899999887666677777777655 3332211445443333222222234799988532 11 222333
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhc-cceEEecc--cccCCC
Q 007349 385 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREG-ADAVMLSG--ETAHGK 450 (607)
Q Consensus 385 e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G-~D~vmLs~--ETa~G~ 450 (607)
+.+. ++ . ..+|+++|.- -.|. .+..++..| +|++-+++ |++-|.
T Consensus 144 ~~l~----~~----~-~~~PvilaGG--------I~~~-----Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 144 SLLR----GL----A-SRKPVILAGG--------LTPD-----NVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred HHhh----cc----c-cCCCEEEECC--------CChH-----HHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 2222 11 1 5689998632 2222 244555556 67666554 445463
No 326
>PRK08198 threonine dehydratase; Provisional
Probab=47.82 E-value=2.9e+02 Score=30.31 Aligned_cols=119 Identities=10% Similarity=0.089 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+. .|.-+..+ .+...-..|++.++.. + . .-++++...+++.+ +..++.
T Consensus 84 alA~~a~~~G~~~~iv---------~p~~~~~~--k~~~~~~~GA~Vi~~~-~----~-~~~~~~~a~~~~~~-~g~~~~ 145 (404)
T PRK08198 84 GVAYAASLLGIKATIV---------MPETAPLS--KVKATRSYGAEVVLHG-D----V-YDEALAKAQELAEE-TGATFV 145 (404)
T ss_pred HHHHHHHHcCCCEEEE---------ECCCCCHH--HHHHHHhCCCEEEEEC-C----C-HHHHHHHHHHHHHh-cCCEec
Confidence 3556799999998773 23323222 3445566799887663 1 2 35777776666544 222111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 536 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~~ 536 (607)
. .|.+ ....+.-.--+.++.++++- .||+..-+|.+..-++ .+.|...||++-+...
T Consensus 146 ~-~~~~------~~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~ 208 (404)
T PRK08198 146 H-PFDD------PDVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGA 208 (404)
T ss_pred C-CCCC------ccHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 1 1111 11222233445677777754 5888888888765444 5689999999999654
No 327
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=47.79 E-value=35 Score=34.19 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhh
Q 007349 112 SSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQ 153 (607)
Q Consensus 112 ~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~ 153 (607)
+-.+.|.+|.++|++.+||.+-.-+.++..++++.-|++-..
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999999999999999987654
No 328
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=47.74 E-value=1.2e+02 Score=31.44 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=79.8
Q ss_pred ccEEEEcCCCcc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHH-HHHHhccceEEecc
Q 007349 368 SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIA-IAVREGADAVMLSG 444 (607)
Q Consensus 368 sDGImIgRGDLg--~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~-nav~~G~D~vmLs~ 444 (607)
+|||++. |--| ..+..++-..+.+.+++.+. ...|+++ ....++-.|..+.+ .+-..|+|++|+..
T Consensus 32 v~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~---------gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 32 VDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIA---------GVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred CCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEE---------ecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 7999874 2111 12222333333333333332 2467776 33455556655544 55666999999975
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhcCC-CCCCCCCCccccCCCCh-hHHHHHHHHHHHhhcCCCEEE--EcC--ChHHHHH
Q 007349 445 ETAHGKFPLKAVKVMHTVALRTESSL-PVSITPPTQFSAHKSHM-GDMFAFHSTTMANTLNTPIIV--FTR--TGSMAVI 518 (607)
Q Consensus 445 ETa~G~yPveaV~~m~~I~~~aE~~~-~~~~~~~~~~~~~~~~~-~~~ia~~a~~~A~~l~a~Iiv--~T~--sG~tA~~ 518 (607)
=.-...-+-+.+++...|+....--+ .|. .+.. ....+ .+.+ .+++. .+ .|+- .|. ..+..+.
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~~pi~iYn--~P~~---tg~~l~~~~~----~~L~~-~~-~v~giK~s~~d~~~~~~~ 169 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASDLPVILYN--IPGR---TGVDLSPETI----ARLAE-HP-NIVGIKDSSGDLDRLTRL 169 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCCCEEEEE--Cccc---cCCCCCHHHH----HHHhc-CC-CEEEEEeCCCCHHHHHHH
Confidence 44333346788899999987654221 111 0100 00111 2222 24443 22 3332 332 2445555
Q ss_pred HHhcCCCCeEEEEeCCHHHHhhhccC-CCeEEE
Q 007349 519 LSHYRPSSTIFAFTNQERIKQRLVLY-QGVMPI 550 (607)
Q Consensus 519 is~~RP~~PIIAvT~d~~taRrL~L~-wGV~Pi 550 (607)
+...+|+..|+.-. +......+.+= .|.++-
T Consensus 170 ~~~~~~~~~v~~G~-d~~~~~~l~~G~~G~i~~ 201 (281)
T cd00408 170 IALLGPDFAVLSGD-DDLLLPALALGADGAISG 201 (281)
T ss_pred HHhcCCCeEEEEcc-hHHHHHHHHcCCCEEEeh
Confidence 66666777777655 66666555432 244443
No 329
>PRK06110 hypothetical protein; Provisional
Probab=47.61 E-value=2.2e+02 Score=30.31 Aligned_cols=116 Identities=13% Similarity=-0.006 Sum_probs=69.3
Q ss_pred HHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007349 394 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 473 (607)
Q Consensus 394 II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 473 (607)
+...|+..|.++.+. -|..+..+ .....-..|++.+.. |....++++...+...+- ..++..
T Consensus 85 lA~~a~~~G~~~~iv---------vp~~~~~~--k~~~i~~~GA~V~~~------~~~~~~~~~~a~~~~~~~-~~~~~~ 146 (322)
T PRK06110 85 VAFAARRHGLAATIV---------VPHGNSVE--KNAAMRALGAELIEH------GEDFQAAREEAARLAAER-GLHMVP 146 (322)
T ss_pred HHHHHHHcCCCEEEE---------EcCCCCHH--HHHHHHHcCCEEEEE------CCCHHHHHHHHHHHHHhc-CCEEcC
Confidence 456799999999773 22222222 234566789998764 234556766655554431 111111
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 474 ITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
. |+ +...+...--+.++.++++. .||+..-+|.+.--++ .++|...|+++-+..
T Consensus 147 ~-~~-------~~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~ 206 (322)
T PRK06110 147 S-FH-------PDLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAH 206 (322)
T ss_pred C-CC-------ChHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 1 11 11222233345677777754 6888888998877775 467999999999954
No 330
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=47.53 E-value=36 Score=36.27 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=37.2
Q ss_pred HHHHHhhHhcCCcEEEeccCCC-------hhHHHHHHHHHHhcCCCceEEEe--ecChhhHhcHHHHHhh--ccEEEEcC
Q 007349 307 WEDIKFGVDNQVDFYAVSFVKD-------AKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA--SDGAMVAR 375 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~s-------a~dv~~vr~~l~~~~~~i~IIAK--IEt~~av~NldeIl~~--sDGImIgR 375 (607)
.+-+....+.|+++|.+ +-|+ ..|+..++...+... ++||+- |.|. +.+.++++. +||+||||
T Consensus 141 ~~~~~~l~~~G~~~i~v-H~Rt~~q~~~~~a~w~~i~~i~~~~~--ipvi~NGdI~s~---~d~~~~~~~tg~dgvMigR 214 (309)
T PF01207_consen 141 IEFARILEDAGVSAITV-HGRTRKQRYKGPADWEAIAEIKEALP--IPVIANGDIFSP---EDAERMLEQTGADGVMIGR 214 (309)
T ss_dssp HHHHHHHHHTT--EEEE-ECS-TTCCCTS---HHHHHHCHHC-T--SEEEEESS--SH---HHHHHHCCCH-SSEEEESH
T ss_pred HHHHHHhhhcccceEEE-ecCchhhcCCcccchHHHHHHhhccc--ceeEEcCccCCH---HHHHHHHHhcCCcEEEEch
Confidence 34556667899999987 3333 455666665554433 888884 3333 333444444 89999999
Q ss_pred CCcc
Q 007349 376 GDLG 379 (607)
Q Consensus 376 GDLg 379 (607)
|=|+
T Consensus 215 gal~ 218 (309)
T PF01207_consen 215 GALG 218 (309)
T ss_dssp HHCC
T ss_pred hhhh
Confidence 8664
No 331
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=47.42 E-value=30 Score=39.13 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=40.9
Q ss_pred HhHHHHHhhHhcCCcEEEecc------CCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh---ccEEEEcC
Q 007349 305 KDWEDIKFGVDNQVDFYAVSF------VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA---SDGAMVAR 375 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~Sf------V~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~---sDGImIgR 375 (607)
++.++++.+++.|++.|++.. --+.+.-.++..++ -+++.+|+ | .|+.+.+++... +||++||-
T Consensus 167 h~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~i---p~~~~~vs--e--SGI~t~~d~~~~~~~~davLiG~ 239 (454)
T PRK09427 167 SNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLI---PADVIVIS--E--SGIYTHAQVRELSPFANGFLIGS 239 (454)
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC---CCCcEEEE--e--CCCCCHHHHHHHHhcCCEEEECH
Confidence 566778889999999999863 11222222333333 23455555 3 255555555433 89999996
Q ss_pred CCccc
Q 007349 376 GDLGA 380 (607)
Q Consensus 376 GDLg~ 380 (607)
.-+..
T Consensus 240 ~lm~~ 244 (454)
T PRK09427 240 SLMAE 244 (454)
T ss_pred HHcCC
Confidence 54443
No 332
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=46.88 E-value=36 Score=38.71 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=41.8
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 100 ~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
+..+=+-+|.+.+..+.++.|+++|+++.=+..+||..+...++++.||+
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~ 262 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRA 262 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHH
Confidence 44555566777788999999999999999999999988877777777775
No 333
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=46.70 E-value=1.1e+02 Score=33.56 Aligned_cols=96 Identities=24% Similarity=0.322 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE
Q 007349 328 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI 406 (607)
Q Consensus 328 sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi 406 (607)
+-+++..+++.. +.++|.| +- .-.++....++. +|+|.++=.- |.+ ++..+.....+.+.+...+.|+|
T Consensus 224 ~w~~i~~ir~~~-----~~pviiK-gV-~~~eda~~a~~~G~d~I~VSnhG-Grq--ld~~~~~~~~L~ei~~~~~~~vi 293 (361)
T cd04736 224 NWQDLRWLRDLW-----PHKLLVK-GI-VTAEDAKRCIELGADGVILSNHG-GRQ--LDDAIAPIEALAEIVAATYKPVL 293 (361)
T ss_pred CHHHHHHHHHhC-----CCCEEEe-cC-CCHHHHHHHHHCCcCEEEECCCC-cCC--CcCCccHHHHHHHHHHHhCCeEE
Confidence 345677777654 2355555 21 222223333333 8999885100 111 12212222233333344578888
Q ss_pred EEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccc
Q 007349 407 VATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 445 (607)
Q Consensus 407 vaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 445 (607)
. ....-+ -.|++.|+..|+|++|+..-
T Consensus 294 ~---------dGGIr~---g~Dv~KALaLGA~aV~iGr~ 320 (361)
T cd04736 294 I---------DSGIRR---GSDIVKALALGANAVLLGRA 320 (361)
T ss_pred E---------eCCCCC---HHHHHHHHHcCCCEEEECHH
Confidence 7 333322 45899999999999998543
No 334
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=46.65 E-value=1.4e+02 Score=31.34 Aligned_cols=96 Identities=16% Similarity=0.060 Sum_probs=55.4
Q ss_pred HHHHHh-h-ccEEEEcC--CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh-hhhHHHHHHh
Q 007349 361 LHSIIS-A-SDGAMVAR--GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVRE 435 (607)
Q Consensus 361 ldeIl~-~-sDGImIgR--GDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav~~ 435 (607)
++..++ . +|||+++= |+ +..|..++-..+.+.+++.+. ..+|++. ....++-.| +.-.-.+...
T Consensus 30 i~~l~~~~Gv~gi~v~GstGE-~~~Ls~eEr~~~~~~~~~~~~-~~~~via---------gvg~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 30 VRFNIEKQGIDGLYVGGSTGE-AFLLSTEEKKQVLEIVAEEAK-GKVKLIA---------QVGSVNTAEAQELAKYATEL 98 (293)
T ss_pred HHHHHhcCCCCEEEECCCccc-cccCCHHHHHHHHHHHHHHhC-CCCCEEe---------cCCCCCHHHHHHHHHHHHHc
Confidence 344444 3 79999851 11 112333444444444444443 3467776 333444455 5555677899
Q ss_pred ccceEEecccccCCCCHHHHHHHHHHHHHHhh
Q 007349 436 GADAVMLSGETAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 436 G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 467 (607)
|+|++|+..=--...-+-+.++....|+..+.
T Consensus 99 Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~ 130 (293)
T PRK04147 99 GYDAISAVTPFYYPFSFEEICDYYREIIDSAD 130 (293)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 99999998533223234677888999987764
No 335
>PRK07048 serine/threonine dehydratase; Validated
Probab=46.64 E-value=2e+02 Score=30.51 Aligned_cols=118 Identities=12% Similarity=0.151 Sum_probs=67.7
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+- -|..+..+ .+...-..|++.+...+ +.-++.+...++..+- ...+
T Consensus 86 alA~~a~~~G~~~~vv---------vp~~~~~~--k~~~~~~~GAeV~~~~~------~~~~~~~~a~~l~~~~--g~~~ 146 (321)
T PRK07048 86 AIALSARLLGIPATIV---------MPQDAPAA--KVAATRGYGGEVVTYDR------YTEDREEIGRRLAEER--GLTL 146 (321)
T ss_pred HHHHHHHHcCCCEEEE---------ECCCCCHH--HHHHHHHCCCEEEEECC------CHHHHHHHHHHHHHhc--CCEE
Confidence 3556899999998773 22211122 34455567999887752 3445655544444321 1111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHHhc----CCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHY----RPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is~~----RP~~PIIAvT~d~ 535 (607)
-..|.+. ...+.-..-+.++.++++. .||+..-+|.|..-++++ .|...|+++-+..
T Consensus 147 ~~~~~~~------~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~ 209 (321)
T PRK07048 147 IPPYDHP------HVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEA 209 (321)
T ss_pred ECCCCCc------chhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 1111110 1111112233567777755 688899999997666655 7999999999965
No 336
>PLN02565 cysteine synthase
Probab=46.58 E-value=2.4e+02 Score=30.21 Aligned_cols=121 Identities=12% Similarity=0.083 Sum_probs=71.4
Q ss_pred HHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007349 394 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 473 (607)
Q Consensus 394 II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 473 (607)
+...|+.+|.|+.+. .|..+....+...-..|++.++...+ ...-++++...+++++....++..
T Consensus 82 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~----~~~~~~~~~a~~l~~~~~~~~~~~ 146 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA----KGMKGAVQKAEEILAKTPNSYILQ 146 (322)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC----CCcHHHHHHHHHHHHhCCCcEeec
Confidence 445799999998763 44445555566777889998875332 122356666666654421222111
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 474 ITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
+ |.+. . .+.--...-+.++.++++ . .||+..-+|.+.--++ .++|.+.||++.+..
T Consensus 147 q-~~n~----~-n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~ 209 (322)
T PLN02565 147 Q-FENP----A-NPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVE 209 (322)
T ss_pred c-cCCH----h-HHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 1 1110 0 010012233456777775 4 7888888888775555 556999999999964
No 337
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.34 E-value=3.6e+02 Score=28.05 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=53.4
Q ss_pred CCceEEEee--cChhhHhcHHHHHhh--ccEEEEcCC-----CcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEEcccch
Q 007349 344 ADIHVIVKI--ESADSIPNLHSIISA--SDGAMVARG-----DLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVATNMLE 413 (607)
Q Consensus 344 ~~i~IIAKI--Et~~av~NldeIl~~--sDGImIgRG-----DLg~elg~e~v~~~qk~II~~c~~a-GKPvivaTqmLe 413 (607)
.+.+++++| .+.+...+.-..+.. +|+|=+-=+ ..+.+++ .-+..-.+++++++++ ++|+++
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~v------ 159 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIV------ 159 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEE------
Confidence 346788887 444454444444433 688876310 0011222 2346667788888887 899987
Q ss_pred hhhcCCCCChHhhhhHHH-HHHhccceEEecc
Q 007349 414 SMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 444 (607)
Q Consensus 414 SM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 444 (607)
+ -.|+..|..+++. +...|+|++.+.+
T Consensus 160 ---K-l~~~~~~~~~~a~~~~~~G~d~i~~~n 187 (296)
T cd04740 160 ---K-LTPNVTDIVEIARAAEEAGADGLTLIN 187 (296)
T ss_pred ---E-eCCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 2 1244456667665 5568999998753
No 338
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=45.96 E-value=50 Score=36.46 Aligned_cols=92 Identities=21% Similarity=0.201 Sum_probs=59.4
Q ss_pred hHHHHHhhHhcC-CcEEEeccCC--C---------------hhHHHHHHHHHHhcC--CCceEEEeecChhhHhcHHHHH
Q 007349 306 DWEDIKFGVDNQ-VDFYAVSFVK--D---------------AKVVHELKDYLKSCN--ADIHVIVKIESADSIPNLHSII 365 (607)
Q Consensus 306 D~~dI~~al~~g-vD~I~~SfV~--s---------------a~dv~~vr~~l~~~~--~~i~IIAKIEt~~av~NldeIl 365 (607)
+.+++..+++.+ +|+|.++-.. + ..-+.++++++...+ .++.||+ .-|+.+-.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 334566666665 9999988653 1 112334556565433 3577777 34666666666
Q ss_pred hh----ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Q 007349 366 SA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 410 (607)
Q Consensus 366 ~~----sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTq 410 (607)
+. +|++.+||.=|..- + -....+|.....|+++|||
T Consensus 302 kalaLGAd~V~ig~~~l~al-~--------c~~~~~c~~~~cP~Giat~ 341 (392)
T cd02808 302 KALALGADAVGIGTAALIAL-G--------CIQARKCHTNTCPVGVATQ 341 (392)
T ss_pred HHHHcCCCeeeechHHHHhc-c--------hHHHHhcCCCCCCcccccC
Confidence 65 89999998655321 1 1244789999999999998
No 339
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=45.93 E-value=38 Score=29.47 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=31.4
Q ss_pred cccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccccccccCceEEEEEEEEeCCeEEEEEEeCcEec
Q 007349 206 DDFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLLSIQGGMMSLAVKSKTKDLVKCIVVDGGELK 285 (607)
Q Consensus 206 ~~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~ 285 (607)
.++.+.+++||+|..- .| +.-+|.+++++.+..++..|..++
T Consensus 32 ~~m~~~L~~Gd~VvT~-------------------------------------gG-i~G~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTI-------------------------------------GG-IIGTVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEEC-------------------------------------CC-eEEEEEEEeCCEEEEEECCCeEEE
Confidence 4678899999999876 22 456777888888877776666654
No 340
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=45.72 E-value=4.1e+02 Score=28.46 Aligned_cols=139 Identities=17% Similarity=0.142 Sum_probs=77.6
Q ss_pred HHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEc-CCCccc-
Q 007349 307 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVA-RGDLGA- 380 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIg-RGDLg~- 380 (607)
...+....+.|+|+|..+-..++ ..++-.+++... +.+++| .+.+++|-+.. +|.|=-- .|.-+-
T Consensus 77 ~~Ea~~L~eaGvDiIDaT~r~rP--~~~~~~~iK~~~-~~l~MA------D~stleEal~a~~~Gad~I~TTl~gyT~~~ 147 (283)
T cd04727 77 FVEAQILEALGVDMIDESEVLTP--ADEEHHIDKHKF-KVPFVC------GARNLGEALRRISEGAAMIRTKGEAGTGNV 147 (283)
T ss_pred HHHHHHHHHcCCCEEeccCCCCc--HHHHHHHHHHHc-CCcEEc------cCCCHHHHHHHHHCCCCEEEecCCCCCCcH
Confidence 45555667889999998888777 334444454433 677888 44556555544 3433221 000000
Q ss_pred ----------------CCCC--CCHHH-H------HHHHHHHHHHcCCCEE-EEcccchhhhcCCCCChHhhhhHHHHHH
Q 007349 381 ----------------ELPI--EDVPL-L------QEDIIRRCRSMQKPVI-VATNMLESMIDHPTPTRAEVSDIAIAVR 434 (607)
Q Consensus 381 ----------------elg~--e~v~~-~------qk~II~~c~~aGKPvi-vaTqmLeSM~~~~~PtrAEv~Dv~nav~ 434 (607)
..|+ +.+.. . .+.+-+.+....+||+ +| ....-|.++ +..++.
T Consensus 148 ~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iA--------eGGI~Tpen---a~~v~e 216 (283)
T cd04727 148 VEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFA--------AGGVATPAD---AALMMQ 216 (283)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEE--------eCCCCCHHH---HHHHHH
Confidence 0111 00000 0 0112222334569987 44 444434443 446677
Q ss_pred hccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 435 EGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 435 ~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
.|+|+++..+.-..-..|.+.++.+......
T Consensus 217 ~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 217 LGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred cCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 8999999987665567899999988776544
No 341
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=45.67 E-value=96 Score=27.82 Aligned_cols=66 Identities=8% Similarity=0.123 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 007349 328 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 328 sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviv 407 (607)
|.--+..+++++++.|-+..+.+ -++..+++.+.-.|.|+++| .+....+++-+.|...|+||.+
T Consensus 13 Ss~la~km~~~a~~~gi~~~i~a-----~~~~e~~~~~~~~Dvill~P----------Qv~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 13 SGLLANALNKGAKERGVPLEAAA-----GAYGSHYDMIPDYDLVILAP----------QMASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEE-----eeHHHHHHhccCCCEEEEcC----------hHHHHHHHHHHHhhhcCCCEEE
Confidence 44446678999998887766554 35555777777789999874 6888888999999999999977
Q ss_pred E
Q 007349 408 A 408 (607)
Q Consensus 408 a 408 (607)
-
T Consensus 78 I 78 (99)
T cd05565 78 T 78 (99)
T ss_pred e
Confidence 3
No 342
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=45.44 E-value=47 Score=37.69 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=41.4
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 100 KTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 100 ~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
+.++=+-+|+.-.+.+.++.|+++|++++-++-+||..+.+.+.++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 45666777765577999999999999999999999998777777777775
No 343
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.40 E-value=1.8e+02 Score=30.35 Aligned_cols=93 Identities=17% Similarity=0.084 Sum_probs=49.9
Q ss_pred HHHHhhHhcCCcEEEec------cCCChhHHHHHH-HHHHhcCCCceEEEeecC---hhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVS------FVKDAKVVHELK-DYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~S------fV~sa~dv~~vr-~~l~~~~~~i~IIAKIEt---~~av~NldeIl~~-sDGImIgRG 376 (607)
+.+++.++.|+|+|.+. +.=+.++-.++- ...+..+ . ||+.+-+ .++++-...--+. +|++|+.+-
T Consensus 24 ~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P 100 (279)
T cd00953 24 KHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNLEESIELARAAKSFGIYAIASLPP 100 (279)
T ss_pred HHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 44578889999998763 223444444433 3334333 2 6777743 3344333333333 799998654
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
.+-....-+.+...-+.|.+ ..|+++.
T Consensus 101 ~y~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 101 YYFPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred cCCCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 43211112334444444444 7999884
No 344
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=45.38 E-value=3.7e+02 Score=27.90 Aligned_cols=156 Identities=18% Similarity=0.232 Sum_probs=81.0
Q ss_pred cccCCCccCCCCCCHHhHHHHHhhHhcCCcEE--EeccC---------CCh-----------hHHHHHHHHHHhcCCCce
Q 007349 290 LNVRGKSANLPSITDKDWEDIKFGVDNQVDFY--AVSFV---------KDA-----------KVVHELKDYLKSCNADIH 347 (607)
Q Consensus 290 vn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I--~~SfV---------~sa-----------~dv~~vr~~l~~~~~~i~ 347 (607)
.-+|=.....|.+. .-.+.+....+.|+|+| ++||- +.+ +++-++-+.+.+.+.+++
T Consensus 11 ~li~y~~aG~P~~~-~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~p 89 (256)
T TIGR00262 11 AFIPFVTAGDPTLE-TSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIP 89 (256)
T ss_pred eEEEEEeCCCCCHH-HHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 34444444556542 22344555568899985 55662 111 111111112222223444
Q ss_pred EE-EeecCh---hhHhcH-HHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCC
Q 007349 348 VI-VKIESA---DSIPNL-HSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTP 421 (607)
Q Consensus 348 II-AKIEt~---~av~Nl-deIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~P 421 (607)
++ -...++ -|++++ ++..+. +||+++- || |.++ ..+++..|+++|...+.+ .+|..
T Consensus 90 lv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip--Dl----p~ee----~~~~~~~~~~~gl~~i~l--------v~P~T 151 (256)
T TIGR00262 90 IGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA--DL----PLEE----SGDLVEAAKKHGVKPIFL--------VAPNA 151 (256)
T ss_pred EEEEEeccHHhhhhHHHHHHHHHHcCCCEEEEC--CC----ChHH----HHHHHHHHHHCCCcEEEE--------ECCCC
Confidence 33 333443 366664 344443 7999984 44 4332 467889999999886643 55666
Q ss_pred ChHhhhhHHHHHHhccceEEec-ccccC-CCCHHHHHHHHHHHHHH
Q 007349 422 TRAEVSDIAIAVREGADAVMLS-GETAH-GKFPLKAVKVMHTVALR 465 (607)
Q Consensus 422 trAEv~Dv~nav~~G~D~vmLs-~ETa~-G~yPveaV~~m~~I~~~ 465 (607)
+.+.+..+... .+|+..+|-. |=|-. ..++.+..+.++++...
T Consensus 152 ~~eri~~i~~~-~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 152 DDERLKQIAEK-SQGFVYLVSRAGVTGARNRAASALNELVKRLKAY 196 (256)
T ss_pred CHHHHHHHHHh-CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhh
Confidence 55555444443 4555555532 22211 23666777776666543
No 345
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=45.19 E-value=4.3e+02 Score=28.60 Aligned_cols=150 Identities=16% Similarity=0.148 Sum_probs=86.5
Q ss_pred CCCHHhHHHHHhhH-hcCCcEEEe---------ccCC---ChhHHHHHHHHHHhcCCCceEEEeecChhh-HhcHHHHHh
Q 007349 301 SITDKDWEDIKFGV-DNQVDFYAV---------SFVK---DAKVVHELKDYLKSCNADIHVIVKIESADS-IPNLHSIIS 366 (607)
Q Consensus 301 ~lt~kD~~dI~~al-~~gvD~I~~---------SfV~---sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a-v~NldeIl~ 366 (607)
.++..++..|..++ +.|+|.|=+ ||.. ...+...++...+.. ++.++.+.+---.+ ++.++.-.+
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~-~~~~~~~ll~pg~~~~~dl~~a~~ 98 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV-KRAKVAVLLLPGIGTVHDLKAAYD 98 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC-CCCEEEEEeccCccCHHHHHHHHH
Confidence 46778887776655 579999866 3321 122444444444332 33444444321000 222333333
Q ss_pred h-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHH-HHhccceEEecc
Q 007349 367 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLSG 444 (607)
Q Consensus 367 ~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs~ 444 (607)
. +|.|-|+ ....+.. ..++.++.+++.|..+.+. ++.+ . .-+..++.+.+.. ...|+|++.+.
T Consensus 99 ~gvd~iri~-------~~~~e~d-~~~~~i~~ak~~G~~v~~~--l~~s--~--~~~~e~l~~~a~~~~~~Ga~~i~i~- 163 (333)
T TIGR03217 99 AGARTVRVA-------THCTEAD-VSEQHIGMARELGMDTVGF--LMMS--H--MTPPEKLAEQAKLMESYGADCVYIV- 163 (333)
T ss_pred CCCCEEEEE-------eccchHH-HHHHHHHHHHHcCCeEEEE--EEcc--c--CCCHHHHHHHHHHHHhcCCCEEEEc-
Confidence 2 6777765 2233333 3568899999999887542 2222 1 2234556666655 44699999985
Q ss_pred cccCCCCHHHHHHHHHHHHHHh
Q 007349 445 ETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 445 ETa~G~yPveaV~~m~~I~~~a 466 (607)
+|+=..+|.+.-+....+-...
T Consensus 164 DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 164 DSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred cCCCCCCHHHHHHHHHHHHHhC
Confidence 8988899988877777776544
No 346
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=44.83 E-value=2.3e+02 Score=30.08 Aligned_cols=119 Identities=16% Similarity=0.237 Sum_probs=74.0
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-EEcccc--hhhhcCC
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNML--ESMIDHP 419 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqmL--eSM~~~~ 419 (607)
.+++|...+.+...++.+..-+.. .+.||+.-. .+|+++=...-+++++.|++.|.+|= =--++- |......
T Consensus 72 ~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~ 147 (287)
T PF01116_consen 72 ASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGS----ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESE 147 (287)
T ss_dssp STSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-T----TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSS
T ss_pred cCCCEEeecccCCCHHHHHHHHHhCcccccccCC----cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCcccc
Confidence 369999999998887777666655 799999744 56777777888999999999999872 222221 1111111
Q ss_pred CC---ChHhhhhHHHHH-HhccceEEecccccCCCCHH-----HHHHHHHHHHHHh
Q 007349 420 TP---TRAEVSDIAIAV-REGADAVMLSGETAHGKFPL-----KAVKVMHTVALRT 466 (607)
Q Consensus 420 ~P---trAEv~Dv~nav-~~G~D~vmLs~ETa~G~yPv-----eaV~~m~~I~~~a 466 (607)
.- ..-+-.+...++ .-|+|++-.+--|+.|.|+- --++.|.+|...+
T Consensus 148 ~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 148 EETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp TT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 00 001123444565 67999999999999999985 2344455554444
No 347
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=44.82 E-value=3.1e+02 Score=29.19 Aligned_cols=117 Identities=8% Similarity=0.056 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+. .|.-+ .-..+...-..|++.+...+ . .-++.+...+++++- ..++.
T Consensus 81 alA~~a~~~G~~~~v~---------~p~~~--~~~k~~~~~~~GA~V~~~~~-----~-~~~~~~~a~~~~~~~-g~~~~ 142 (317)
T TIGR02991 81 ALAYAAAEEGVRATIC---------MSELV--PQNKVDEIRRLGAEVRIVGR-----S-QDDAQEEVERLVADR-GLTML 142 (317)
T ss_pred HHHHHHHHhCCCEEEE---------cCCCC--CHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHhc-CCEee
Confidence 4556899999999773 22222 22334455668999887753 2 345666666665432 11111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHHh----cCCCCeEEEEeCC
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSH----YRPSSTIFAFTNQ 534 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is~----~RP~~PIIAvT~d 534 (607)
. .+.+ ....+.-..-+.++.++++- .||+..-+|.++.-+++ ++|...|+++-+.
T Consensus 143 ~-~~~n------~~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 143 P-PFDH------PDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred C-CCCC------hHHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 1 1110 11223334456677787754 58888889988777665 4699999999985
No 348
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=44.74 E-value=1.1e+02 Score=31.74 Aligned_cols=96 Identities=21% Similarity=0.228 Sum_probs=56.5
Q ss_pred HHHHhh-ccEEEEcCCCcc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccc
Q 007349 362 HSIISA-SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD 438 (607)
Q Consensus 362 deIl~~-sDGImIgRGDLg--~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D 438 (607)
+-+++. +||+++. |--| ..+..++-..+.+.+.+.+. ...|+++. .....++.-+.-.-.+...|+|
T Consensus 28 ~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~g--------v~~~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 28 EFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAG--------TGSNNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred HHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEec--------cCCccHHHHHHHHHHHHHcCCC
Confidence 333433 7999986 3222 22333343333344443332 24577653 2222333335566677889999
Q ss_pred eEEecccccCCCCHHHHHHHHHHHHHHhh
Q 007349 439 AVMLSGETAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 439 ~vmLs~ETa~G~yPveaV~~m~~I~~~aE 467 (607)
++|+..-.-...-+-+.+++.+.|+..+.
T Consensus 98 ~v~~~~P~~~~~~~~~l~~~~~~ia~~~~ 126 (284)
T cd00950 98 AALVVTPYYNKPSQEGLYAHFKAIAEATD 126 (284)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHhcCC
Confidence 99998765555556788999999988654
No 349
>PRK08526 threonine dehydratase; Provisional
Probab=44.45 E-value=2.5e+02 Score=31.12 Aligned_cols=119 Identities=9% Similarity=0.080 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.|+.+- . |..+....+...-..|++.++. |...-++++...+++.+-. .. +
T Consensus 82 avA~aa~~~Gi~~~Iv---------m--P~~~p~~k~~~~r~~GA~Vv~~------g~~~~~a~~~a~~~a~~~g-~~-~ 142 (403)
T PRK08526 82 GVAISAKKFGIKAVIV---------M--PEATPLLKVSGTKALGAEVILK------GDNYDEAYAFALEYAKENN-LT-F 142 (403)
T ss_pred HHHHHHHHcCCCEEEE---------E--cCCCCHHHHHHHHhCCCEEEEE------CCCHHHHHHHHHHHHHhcC-CE-e
Confidence 4566799999998762 2 2222233344566789988764 3346678777766654322 11 1
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 536 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~~ 536 (607)
-..|.+ ......-..-+.++.++++. .||+..-+|.++--++ ..+|.+.||++-+...
T Consensus 143 v~p~~~------~~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~ 206 (403)
T PRK08526 143 IHPFED------EEVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGA 206 (403)
T ss_pred eCCCCC------HHHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 111111 01222223336677777754 6888888887765544 4579999999998643
No 350
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=44.36 E-value=3.5e+02 Score=27.29 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=30.7
Q ss_pred HHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHh-ccceEEecccccCCCCHHHH
Q 007349 399 RSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVRE-GADAVMLSGETAHGKFPLKA 455 (607)
Q Consensus 399 ~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~-G~D~vmLs~ETa~G~yPvea 455 (607)
+..+.|++.+ ...-+.. |+..+... |+|++|++.---.|.+..+.
T Consensus 190 ~~~~~pvia~---------GGi~~~~---di~~~l~~~g~dgv~vg~al~~~~~~~~~ 235 (243)
T cd04731 190 SAVNIPVIAS---------GGAGKPE---HFVEAFEEGGADAALAASIFHFGEYTIAE 235 (243)
T ss_pred hhCCCCEEEe---------CCCCCHH---HHHHHHHhCCCCEEEEeHHHHcCCCCHHH
Confidence 3458999883 4444444 45555654 99999998777788877654
No 351
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=44.26 E-value=78 Score=33.55 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=46.6
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhh--HhcHHHHHhh-ccEEEEc
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVA 374 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a--v~NldeIl~~-sDGImIg 374 (607)
..+++..+++.|+|.|.+=. -+++++.+..+++++.+.++. ||=.-| .+|+.++++. +|.|.+|
T Consensus 197 tleea~ea~~~GaDiI~lDn-~~~e~l~~~v~~l~~~~~~~~----leasGGI~~~ni~~ya~~GvD~is~g 263 (277)
T TIGR01334 197 TIEQALTVLQASPDILQLDK-FTPQQLHHLHERLKFFDHIPT----LAAAGGINPENIADYIEAGIDLFITS 263 (277)
T ss_pred CHHHHHHHHHcCcCEEEECC-CCHHHHHHHHHHHhccCCCEE----EEEECCCCHHHHHHHHhcCCCEEEeC
Confidence 45667778899999999975 488999888888865555543 444334 3577777776 8999887
No 352
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=44.08 E-value=4e+02 Score=27.92 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=80.7
Q ss_pred hHHHHHhhHhcCCcEEEec-------cCCChhHHHHHHHHHHhcCCCceEEEeecChhh------------HhcHHHHHh
Q 007349 306 DWEDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIESADS------------IPNLHSIIS 366 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a------------v~NldeIl~ 366 (607)
+.++...|.+.|+|-|=+- --.|..-+..+++++ +++|.++|=-+.| .+.+....+
T Consensus 10 s~~~a~~A~~~GAdRiELc~~L~~GGlTPS~g~i~~~~~~~-----~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 10 SMECALTAQQAGADRIELCAAPKEGGLTPSLGVLKSVRERV-----TIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CHHHHHHHHHcCCCEEEEccCcCCCCcCCCHHHHHHHHHhc-----CCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4466777788888877441 223444455555433 5778888833211 223333333
Q ss_pred h-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccc
Q 007349 367 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 445 (607)
Q Consensus 367 ~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 445 (607)
. +||+.+|- |.-+ +.-+.. ..+++++.| .+.|+.+- |..--.+.+. ..+-..+..|+|.|+-||-
T Consensus 85 ~GadGvV~G~--L~~d-g~vD~~-~~~~Li~~a--~~~~vTFH------RAfD~~~d~~--~al~~l~~lG~~rILTSGg 150 (248)
T PRK11572 85 LGFPGLVTGV--LDVD-GHVDMP-RMRKIMAAA--GPLAVTFH------RAFDMCANPL--NALKQLADLGVARILTSGQ 150 (248)
T ss_pred cCCCEEEEee--ECCC-CCcCHH-HHHHHHHHh--cCCceEEe------chhhccCCHH--HHHHHHHHcCCCEEECCCC
Confidence 3 79999984 2111 111222 346667776 47888762 2222233332 3455667779999999876
Q ss_pred ccCCCCHHHHHHHHHHHHHHhh
Q 007349 446 TAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 446 Ta~G~yPveaV~~m~~I~~~aE 467 (607)
... ..+.+..|..+...+.
T Consensus 151 ~~~---a~~g~~~L~~lv~~a~ 169 (248)
T PRK11572 151 QQD---AEQGLSLIMELIAASD 169 (248)
T ss_pred CCC---HHHHHHHHHHHHHhcC
Confidence 543 6777888888877665
No 353
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.04 E-value=3.4e+02 Score=29.93 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccc
Q 007349 333 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 412 (607)
Q Consensus 333 ~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmL 412 (607)
..++++.++. .+.+++-+-+.+.++-+.+ .+|.+-||-+++- + -.+++++.+.||||++.|
T Consensus 155 ~~L~~~~~e~--Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~------n-----~~LL~~va~t~kPVllk~--- 215 (352)
T PRK13396 155 ELLAAAREAT--GLGIITEVMDAADLEKIAE---VADVIQVGARNMQ------N-----FSLLKKVGAQDKPVLLKR--- 215 (352)
T ss_pred HHHHHHHHHc--CCcEEEeeCCHHHHHHHHh---hCCeEEECccccc------C-----HHHHHHHHccCCeEEEeC---
Confidence 3344444443 4778888877766655554 4899999977653 1 335777888999999953
Q ss_pred hhhhcCCCCChHhhhhHHHHHHh-ccceEEeccc---ccCCCCHHH
Q 007349 413 ESMIDHPTPTRAEVSDIAIAVRE-GADAVMLSGE---TAHGKFPLK 454 (607)
Q Consensus 413 eSM~~~~~PtrAEv~Dv~nav~~-G~D~vmLs~E---Ta~G~yPve 454 (607)
...+|..|+...+..+.. |.+-++|..= |-...||..
T Consensus 216 -----G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~ 256 (352)
T PRK13396 216 -----GMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRN 256 (352)
T ss_pred -----CCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCC
Confidence 334577888888888865 6656666533 222356733
No 354
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=43.88 E-value=4.5e+02 Score=28.46 Aligned_cols=147 Identities=14% Similarity=0.091 Sum_probs=88.7
Q ss_pred CCHHhHHHHHhhH-hcCCcEEEe---------ccC-C--ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHH---H
Q 007349 302 ITDKDWEDIKFGV-DNQVDFYAV---------SFV-K--DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSI---I 365 (607)
Q Consensus 302 lt~kD~~dI~~al-~~gvD~I~~---------SfV-~--sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeI---l 365 (607)
++..++..|..++ +.|+|.|=+ ||. . ...+...++..... -.+..+.+.+- -+.-+++++ .
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~-~~~~~~~~ll~--pg~~~~~dl~~a~ 98 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEV-VKQAKIAALLL--PGIGTVDDLKMAY 98 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHh-CCCCEEEEEec--cCcccHHHHHHHH
Confidence 5777777776555 679999877 333 1 11233344443333 23455555442 122233333 3
Q ss_pred hh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHH-HHhccceEEec
Q 007349 366 SA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLS 443 (607)
Q Consensus 366 ~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs 443 (607)
+. +|.|-|+ ....+. ...++.++.+++.|..+.+. ++.+ ...+.+++.+.+.. ...|+|.+.+.
T Consensus 99 ~~gvd~iri~-------~~~~e~-~~~~~~i~~ak~~G~~v~~~--l~~a----~~~~~e~l~~~a~~~~~~Ga~~i~i~ 164 (337)
T PRK08195 99 DAGVRVVRVA-------THCTEA-DVSEQHIGLARELGMDTVGF--LMMS----HMAPPEKLAEQAKLMESYGAQCVYVV 164 (337)
T ss_pred HcCCCEEEEE-------EecchH-HHHHHHHHHHHHCCCeEEEE--EEec----cCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 33 6877765 122232 34588999999999887652 2222 34566777676654 55699999885
Q ss_pred ccccCCCCHHHHHHHHHHHHHHh
Q 007349 444 GETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 444 ~ETa~G~yPveaV~~m~~I~~~a 466 (607)
+|+=..+|.+.-+.+..+-.+.
T Consensus 165 -DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 165 -DSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred -CCCCCCCHHHHHHHHHHHHHhc
Confidence 8988899998888877776554
No 355
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=43.43 E-value=2.7e+02 Score=28.90 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHhhHhcCCcEEEecc------CCChhHHHHH-HHHHHhcCCCceEEEeecC---hhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVSF------VKDAKVVHEL-KDYLKSCNADIHVIVKIES---ADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~Sf------V~sa~dv~~v-r~~l~~~~~~i~IIAKIEt---~~av~NldeIl~~-sDGImIgRG 376 (607)
+.+++.++.|+|++.+.- -=+.++-.++ +..++..+.+++||+.+-. .++++.+...-+. +|++|+.+-
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 556788899999988741 1122333332 3334555678999998854 4444444444333 899998754
Q ss_pred CcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 377 DLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 377 DLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
.... ..-..+-+..-..|.+-++|+++.
T Consensus 106 ~~~~----~s~~~l~~y~~~ia~~~~~pi~iY 133 (289)
T PF00701_consen 106 YYFK----PSQEELIDYFRAIADATDLPIIIY 133 (289)
T ss_dssp TSSS----CCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred cccc----chhhHHHHHHHHHHhhcCCCEEEE
Confidence 3321 122233444455567788999884
No 356
>PRK07695 transcriptional regulator TenI; Provisional
Probab=43.38 E-value=48 Score=32.69 Aligned_cols=35 Identities=0% Similarity=-0.033 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 115 EMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 115 e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
..+.+++++|++.+-|.--|.+.++..+.++.+++
T Consensus 18 ~~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 18 VAVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 33445899999999999999999888888887774
No 357
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=43.31 E-value=1.6e+02 Score=32.64 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCC
Q 007349 328 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQK 403 (607)
Q Consensus 328 sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGK 403 (607)
+-+++..+++.. +.++|.| +|-+.++...+ +|+|+|.-.-=...-+-..-..+..+|.+++.. ..
T Consensus 241 tW~~i~~lr~~~-----~~pvivK-----gV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~-~~ 309 (383)
T cd03332 241 TWEDLAFLREWT-----DLPIVLK-----GILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGD-RL 309 (383)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----cCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcC-CC
Q ss_pred CEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 404 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 404 PvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
|+++ .---..-.|++.++..|+|++++.
T Consensus 310 ~vi~------------dGGIr~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 310 TVLF------------DSGVRTGADIMKALALGAKAVLIG 337 (383)
T ss_pred eEEE------------eCCcCcHHHHHHHHHcCCCEEEEc
No 358
>PRK11761 cysM cysteine synthase B; Provisional
Probab=43.27 E-value=3.4e+02 Score=28.61 Aligned_cols=120 Identities=9% Similarity=0.036 Sum_probs=66.5
Q ss_pred HHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007349 394 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 473 (607)
Q Consensus 394 II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 473 (607)
+...|+.+|.|+.+. .|....-..+...-..|++.+....+ |.| .++.+...+++++- ..++..
T Consensus 78 lA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~l~~~~-~~~~~~ 141 (296)
T PRK11761 78 LAMIAAIKGYRMKLI-----------MPENMSQERRAAMRAYGAELILVPKE---QGM-EGARDLALQMQAEG-EGKVLD 141 (296)
T ss_pred HHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHhcc-CCEecC
Confidence 456799999999773 12222222344555679999888642 333 34444444443321 111111
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHH----HHHHhcCCCCeEEEEeCCH
Q 007349 474 ITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMA----VILSHYRPSSTIFAFTNQE 535 (607)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA----~~is~~RP~~PIIAvT~d~ 535 (607)
.|.+ .. .+..-...-+.++.++++ . .||+.+-+|.+. +.+..++|.+.|+++-|..
T Consensus 142 -~~~n----~~-~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~ 204 (296)
T PRK11761 142 -QFAN----PD-NPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEE 204 (296)
T ss_pred -CCCC----hh-hHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 1110 00 010001123346777775 4 688888899665 5556668999999999964
No 359
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=43.15 E-value=1.5e+02 Score=29.51 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 333 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 333 ~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
..+++.+.+.|+++.+-+.-+... ++.++..+-.|.|+.+..+ +..+..+-+.|++.++|.+.+
T Consensus 78 ~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 78 EASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 346777888888877665544443 5567777778988876332 356677888999999998764
No 360
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=43.05 E-value=3.6e+02 Score=27.07 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=64.0
Q ss_pred HhHHHHHhhHhcCCcEEEeccC--CChhHHHHHHHHHHhcCCCceEEEeecCh---------------hhHhcHHHHHhh
Q 007349 305 KDWEDIKFGVDNQVDFYAVSFV--KDAKVVHELKDYLKSCNADIHVIVKIESA---------------DSIPNLHSIISA 367 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~SfV--~sa~dv~~vr~~l~~~~~~i~IIAKIEt~---------------~av~NldeIl~~ 367 (607)
.+.++++.+++.|+|.|.+.-. ++++-+.++ .+..+.+- +++-|... .-++-+..+...
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i---~~~~g~~~-i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAAVENPEIVREL---SEEFGSER-VMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhChHHHHHH---HHHhCCCc-EEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 3557777788899999877532 233333333 33333321 22222210 112222222222
Q ss_pred -ccEEEEcCCCc-ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccc
Q 007349 368 -SDGAMVARGDL-GAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 445 (607)
Q Consensus 368 -sDGImIgRGDL-g~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 445 (607)
+|.+++---+- +..-| .++ .. +-+.++....|++.+ ...-+..+ +..+...|+|++++..-
T Consensus 162 G~~~i~~~~~~~~g~~~g-~~~-~~---i~~i~~~~~iPvia~---------GGI~~~~d---i~~~~~~Ga~gv~vgsa 224 (241)
T PRK13585 162 GAGSILFTNVDVEGLLEG-VNT-EP---VKELVDSVDIPVIAS---------GGVTTLDD---LRALKEAGAAGVVVGSA 224 (241)
T ss_pred CCCEEEEEeecCCCCcCC-CCH-HH---HHHHHHhCCCCEEEe---------CCCCCHHH---HHHHHHcCCCEEEEEHH
Confidence 67777632111 11111 122 12 233344567999884 44444444 44566789999999766
Q ss_pred ccCCCCHH
Q 007349 446 TAHGKFPL 453 (607)
Q Consensus 446 Ta~G~yPv 453 (607)
--.|.++.
T Consensus 225 ~~~~~~~~ 232 (241)
T PRK13585 225 LYKGKFTL 232 (241)
T ss_pred HhcCCcCH
Confidence 55565553
No 361
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=42.93 E-value=53 Score=35.31 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=40.4
Q ss_pred HHHHhhHhcCCcEEEeccCCCh---------------hHHHHHHHHHHhcCCCceEEE--eecChhhHhcHHHHHhhccE
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISASDG 370 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa---------------~dv~~vr~~l~~~~~~i~IIA--KIEt~~av~NldeIl~~sDG 370 (607)
+-++...+.|+|.|.+ +.+++ .++..+++.-+. -.+++||+ -|.|.+ ++.+.+.-+||
T Consensus 145 ~~~~~l~~~G~~~itv-HgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~-~~~ipVi~NGdI~s~~---da~~~l~g~dg 219 (318)
T TIGR00742 145 DFVEIVSGKGCQNFIV-HARKAWLSGLSPKENREIPPLRYERVYQLKKD-FPHLTIEINGGIKNSE---QIKQHLSHVDG 219 (318)
T ss_pred HHHHHHHHcCCCEEEE-eCCchhhcCCCccccccCCchhHHHHHHHHHh-CCCCcEEEECCcCCHH---HHHHHHhCCCE
Confidence 3345556889999876 34543 144444443332 23577776 344443 34445556999
Q ss_pred EEEcCCCcc
Q 007349 371 AMVARGDLG 379 (607)
Q Consensus 371 ImIgRGDLg 379 (607)
+|||||=|+
T Consensus 220 VMigRgal~ 228 (318)
T TIGR00742 220 VMVGREAYE 228 (318)
T ss_pred EEECHHHHh
Confidence 999999876
No 362
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=42.84 E-value=1.2e+02 Score=30.08 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=45.1
Q ss_pred HHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 333 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 333 ~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
..+++.+.+.++.+.+-+.-+.... +|++++++-.|.|+.+-.. +..+..+-+.|+++++|++.+
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 4456667777777665554333332 5778888889988876321 356777889999999998875
No 363
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=42.76 E-value=1.9e+02 Score=27.09 Aligned_cols=47 Identities=21% Similarity=0.382 Sum_probs=35.4
Q ss_pred ecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHH---------HHHHHHHHHHHh
Q 007349 106 TIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASH---------QKTIDLVKEYNS 152 (607)
Q Consensus 106 TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~---------~~~i~~iR~~~~ 152 (607)
+..+...+.+.+++|.++|.+.+.+++-|++.+.+ .++++.++.+.+
T Consensus 92 ~tn~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 147 (216)
T smart00729 92 ETRPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLRE 147 (216)
T ss_pred EeCcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 33355678999999999999988888888887654 456666666654
No 364
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=42.74 E-value=92 Score=32.11 Aligned_cols=69 Identities=22% Similarity=0.132 Sum_probs=41.6
Q ss_pred HhhHhcCCcEEEeccCCCh---hHHHHHHHHHHhcCCCceEEE--eecChhhHhcHHHHHhh-ccEEEEcCCCcccCCC
Q 007349 311 KFGVDNQVDFYAVSFVKDA---KVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARGDLGAELP 383 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa---~dv~~vr~~l~~~~~~i~IIA--KIEt~~av~NldeIl~~-sDGImIgRGDLg~elg 383 (607)
+...+.|+|+|.+---... .++..+++.-+.. ..++||+ =|.|. +...+.+.. +|++|+|||=|.-.+.
T Consensus 155 ~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~---eda~e~l~~GAd~VmvgR~~l~~~~~ 229 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDI---ESAKEMLKAGADFVSVARAILKGNVE 229 (231)
T ss_pred HHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCH---HHHHHHHHhCCCeEEEcHhhccCCcC
Confidence 4456889999988522221 3566666654432 2377887 23333 333444444 9999999987765544
No 365
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=42.35 E-value=1.9e+02 Score=30.85 Aligned_cols=95 Identities=22% Similarity=0.248 Sum_probs=53.7
Q ss_pred HHHHhh-ccEEEEc-C-CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh-hhhHHHHHHhcc
Q 007349 362 HSIISA-SDGAMVA-R-GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGA 437 (607)
Q Consensus 362 deIl~~-sDGImIg-R-GDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~ 437 (607)
+..++. +|||++. - |+. ..+..++-..+.+..++.+ +..+||++- ....+-.| +.-.-.|-..|+
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~-~~Lt~eEr~~v~~~~~~~~-~grvpvi~G---------v~~~~t~~ai~~a~~A~~~Ga 104 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGEC-ATLTWEEKQAFVATVVETV-AGRVPVFVG---------ATTLNTRDTIARTRALLDLGA 104 (309)
T ss_pred HHHHHcCCCEEEECcccccc-hhCCHHHHHHHHHHHHHHh-CCCCCEEEE---------eccCCHHHHHHHHHHHHHhCC
Confidence 333343 8999984 1 111 1223344334444444443 345788763 23333334 445556677799
Q ss_pred ceEEecccccCCCCHHHHHHHHHHHHHHhh
Q 007349 438 DAVMLSGETAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 438 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 467 (607)
|++|+..=--...-+-+.+++.+.|+..++
T Consensus 105 d~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 105 DGTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred CEEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 999997543222224678889999998874
No 366
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=42.17 E-value=1.3e+02 Score=31.24 Aligned_cols=168 Identities=18% Similarity=0.208 Sum_probs=85.4
Q ss_pred HHHHHhh-ccEEEEcC--CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhcc
Q 007349 361 LHSIISA-SDGAMVAR--GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGA 437 (607)
Q Consensus 361 ldeIl~~-sDGImIgR--GDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~ 437 (607)
++-.++. +||++++= |+ +..+..++-..+.+.+++.+ ....|+++.+ ....|+.-+.-.-.+...|+
T Consensus 28 i~~l~~~Gv~gl~~~GstGE-~~~Lt~~Er~~l~~~~~~~~-~~~~~vi~gv--------~~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGE-FYSLTDEERKELLEIVVEAA-AGRVPVIAGV--------GANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTT-GGGS-HHHHHHHHHHHHHHH-TTSSEEEEEE--------ESSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcCCCEEEECCCCcc-cccCCHHHHHHHHHHHHHHc-cCceEEEecC--------cchhHHHHHHHHHHHhhcCc
Confidence 3444444 89999951 11 11222233333333333332 2346777632 22233433555667788899
Q ss_pred ceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCCh-hHHHHHHHHHHHhhcCCCEEEEc-CCh--
Q 007349 438 DAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHM-GDMFAFHSTTMANTLNTPIIVFT-RTG-- 513 (607)
Q Consensus 438 D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~-~~~ia~~a~~~A~~l~a~Iiv~T-~sG-- 513 (607)
|++|+..=--...-+-+.+++.+.|+..++..+. +|.. ......++ .+. ..+++. ++ .|+-+= .+|
T Consensus 98 d~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~---iYn~-P~~tg~~ls~~~----l~~L~~-~~-nv~giK~s~~~~ 167 (289)
T PF00701_consen 98 DAVLVIPPYYFKPSQEELIDYFRAIADATDLPII---IYNN-PARTGNDLSPET----LARLAK-IP-NVVGIKDSSGDL 167 (289)
T ss_dssp SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEE---EEEB-HHHHSSTSHHHH----HHHHHT-ST-TEEEEEESSSBH
T ss_pred eEEEEeccccccchhhHHHHHHHHHHhhcCCCEE---EEEC-CCccccCCCHHH----HHHHhc-CC-cEEEEEcCchhH
Confidence 9999875444445577889999999966654321 1110 00001111 222 235666 33 333211 233
Q ss_pred -HHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEE
Q 007349 514 -SMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIY 551 (607)
Q Consensus 514 -~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~ 551 (607)
+..+.+.+..|...|+.- .+..+...|. +|.....
T Consensus 168 ~~~~~~~~~~~~~~~v~~G-~d~~~~~~l~--~G~~G~i 203 (289)
T PF00701_consen 168 ERLIQLLRAVGPDFSVFCG-DDELLLPALA--AGADGFI 203 (289)
T ss_dssp HHHHHHHHHSSTTSEEEES-SGGGHHHHHH--TTSSEEE
T ss_pred HHHHHHhhhcccCeeeecc-cccccccccc--ccCCEEE
Confidence 455556667788888876 5556655543 4555444
No 367
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=42.15 E-value=1.4e+02 Score=29.63 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCceEEEeecChh-hHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 333 HELKDYLKSCNADIHVIVKIESAD-SIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 333 ~~vr~~l~~~~~~i~IIAKIEt~~-av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
..+++.+.+.|+++.|.+.-|... -.++.+++++..|.|+.+-. . ......+-+.|+++++|++.+
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d---------~-~~~~~~ln~~c~~~~ip~i~~ 144 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEE---------N-YERTAKVNDVCRKHHIPFISC 144 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCC---------C-HHHHHHHHHHHHHcCCCEEEE
Confidence 346777888899888877666553 24677888888898887522 1 445667889999999999875
No 368
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=41.98 E-value=6e+02 Score=29.34 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=93.2
Q ss_pred CCCHHhHHHHHhh-HhcCCcEEEecc-CCChhHHHHHHHHHHhcCCCceEEEeecC-hhhHh-----cHHHHHhh-ccEE
Q 007349 301 SITDKDWEDIKFG-VDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIP-----NLHSIISA-SDGA 371 (607)
Q Consensus 301 ~lt~kD~~dI~~a-l~~gvD~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IIAKIEt-~~av~-----NldeIl~~-sDGI 371 (607)
.++..++..|... .+.|+|.|=+.| .-++.|...++...+..-.+..+.+..=. ..++. .++..+.. .|.|
T Consensus 23 ~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i 102 (524)
T PRK12344 23 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVV 102 (524)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEE
Confidence 4577787666544 467999997755 34677766665554321123444432211 11221 22333333 4444
Q ss_pred EE--cCCCcccC----CCCCCHHHHHHHHHHHHHHcCCCEEEEcc-cchhhhcCCCCChHhhhhHHH-HHHhccceEEec
Q 007349 372 MV--ARGDLGAE----LPIEDVPLLQEDIIRRCRSMQKPVIVATN-MLESMIDHPTPTRAEVSDIAI-AVREGADAVMLS 443 (607)
Q Consensus 372 mI--gRGDLg~e----lg~e~v~~~qk~II~~c~~aGKPvivaTq-mLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs 443 (607)
-+ .-.|+-.+ ...+++....++.++.++++|..|-+.+. +.+. ..-+..-+.+++. +...|+|.+.|.
T Consensus 103 ~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da----~r~d~~~l~~~~~~~~~~Gad~i~l~ 178 (524)
T PRK12344 103 TIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDG----YKANPEYALATLKAAAEAGADWVVLC 178 (524)
T ss_pred EEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccc----ccCCHHHHHHHHHHHHhCCCCeEEEc
Confidence 43 33343221 22355667777899999999998765221 1121 1112232445444 346799999985
Q ss_pred ccccCCCCHHHHHHHHHHHHHHh
Q 007349 444 GETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 444 ~ETa~G~yPveaV~~m~~I~~~a 466 (607)
+|.=..+|.+.-+++..+....
T Consensus 179 -DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 179 -DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred -cCCCCcCHHHHHHHHHHHHHhc
Confidence 8988899999999988888765
No 369
>PRK07591 threonine synthase; Validated
Probab=41.89 E-value=2.6e+02 Score=31.10 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=73.2
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+++|.|+.+. .|..+.-..+...-..|++.+..- |.| -++++.+.+++.+-+..+..
T Consensus 151 alA~~aa~~Gl~~~I~-----------vP~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~~~ 213 (421)
T PRK07591 151 SVAAHAARAGLDSCVF-----------IPADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWGFV 213 (421)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEEEe
Confidence 4566789999999773 233333345667788999988774 345 46777777776543221111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC---C-CEEEEcCChHHHHHHHhc-----------CCCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN---T-PIIVFTRTGSMAVILSHY-----------RPSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~---a-~Iiv~T~sG~tA~~is~~-----------RP~~PIIAvT~d~ 535 (607)
.. +. ..+...-...+ +.++.++++ . .||+.+-+|.+..-+.+. +|...|+++-+..
T Consensus 214 n~-~~---~p~~ieG~~Ti---a~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g 284 (421)
T PRK07591 214 NI-NL---RPYYAEGSKTL---GYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEG 284 (421)
T ss_pred cC-CC---CcccccchHHH---HHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCC
Confidence 10 00 00100111223 557888875 3 699999999988666653 6888999999963
No 370
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=41.29 E-value=2.6e+02 Score=30.66 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=76.9
Q ss_pred CceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcc---cCCCCCCHHHHHHHHHHHHHHcCCCEE-EEcccc-------
Q 007349 345 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLG---AELPIEDVPLLQEDIIRRCRSMQKPVI-VATNML------- 412 (607)
Q Consensus 345 ~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg---~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqmL------- 412 (607)
.++|...+.+..-.+.+..-++. .+.||+.-..|. ..+|+++=...-+++++.|+++|.+|= =-.++-
T Consensus 75 ~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~ 154 (347)
T PRK13399 75 DIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEA 154 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccc
Confidence 47889999888776666555554 689999866553 344577777788999999999999871 111111
Q ss_pred ---hhhhcCC----CCChHhhhhHHHHHH-hccceEEecccccCCCCHH--------HHHHHHHHHHHHh
Q 007349 413 ---ESMIDHP----TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL--------KAVKVMHTVALRT 466 (607)
Q Consensus 413 ---eSM~~~~----~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~yPv--------eaV~~m~~I~~~a 466 (607)
+...... .-......+...++. -|+|++..+--|+.|.|+- --...|.+|..++
T Consensus 155 g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v 224 (347)
T PRK13399 155 GEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARL 224 (347)
T ss_pred cccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhc
Confidence 1100000 000111234456665 5999999999999999942 3344566665544
No 371
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=41.15 E-value=1.3e+02 Score=30.82 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 333 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 333 ~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
..+++.+.+.|+++.|-+--+..+. +|++++++..|.|+-+- +-+..+..+-+.|++.++|++.+
T Consensus 81 ~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~----------D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 81 ESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCT----------DNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcC----------CCHHHHHHHHHHHHHcCCCEEEE
Confidence 3456777777888776664444333 57888888888887752 22345677889999999999875
No 372
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=41.07 E-value=2.1e+02 Score=30.48 Aligned_cols=118 Identities=12% Similarity=0.185 Sum_probs=75.0
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-EEcccc--hhh-hcC
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNML--ESM-IDH 418 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqmL--eSM-~~~ 418 (607)
..++|...+.+..-++.+..-++. .+.||+.. -.+|+++=...-+++++.|++.|..|= =-.++= |.- ...
T Consensus 73 ~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~Dg----S~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~ 148 (284)
T PRK09195 73 YHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDG----SHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVD 148 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccc
Confidence 468899999988866666555555 78999974 346777777888999999999998871 101110 000 000
Q ss_pred CCC-ChHhhhhHHHHHH-hccceEEecccccCCCCH---HHHHHHHHHHHHH
Q 007349 419 PTP-TRAEVSDIAIAVR-EGADAVMLSGETAHGKFP---LKAVKVMHTVALR 465 (607)
Q Consensus 419 ~~P-trAEv~Dv~nav~-~G~D~vmLs~ETa~G~yP---veaV~~m~~I~~~ 465 (607)
... ......+...++. -|+|++-.+--|+.|.|+ ---.+.|.+|...
T Consensus 149 ~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~ 200 (284)
T PRK09195 149 EADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQW 200 (284)
T ss_pred cccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHH
Confidence 000 0111234557775 599999999999999996 2334455555443
No 373
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=40.84 E-value=3.2e+02 Score=29.56 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHc--------CCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEEecccc
Q 007349 388 PLLQEDIIRRCRSM--------QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGET 446 (607)
Q Consensus 388 ~~~qk~II~~c~~a--------GKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ET 446 (607)
+....++++++++. .+|+++ ...|..+..++.+++. +...|+|++.+.+-+
T Consensus 188 ~~~~~~i~~~V~~~~~~~~~~~~~Pv~v--------KLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 188 KAELRDLLTAVKQEQDGLRRVHRVPVLV--------KIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCCceEE--------EeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 45556666666543 289998 3466666667777777 667899999998754
No 374
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=40.74 E-value=4.2e+02 Score=28.05 Aligned_cols=131 Identities=15% Similarity=0.206 Sum_probs=77.2
Q ss_pred CCCCCHHhHHHHHhhHhcCCcEEEec---------c-----CCChhHH-HHHHHHHHhcCCCceEEEee------cChhh
Q 007349 299 LPSITDKDWEDIKFGVDNQVDFYAVS---------F-----VKDAKVV-HELKDYLKSCNADIHVIVKI------ESADS 357 (607)
Q Consensus 299 lp~lt~kD~~dI~~al~~gvD~I~~S---------f-----V~sa~dv-~~vr~~l~~~~~~i~IIAKI------Et~~a 357 (607)
+-.+|.+|.--...+-+.|+|.|.+. + | +-++. ...+... +.-.+..|++-+ .-.++
T Consensus 17 i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~v-tldem~~h~~aV~-rg~~~~~vv~DmPf~sy~~~e~a 94 (263)
T TIGR00222 17 IVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPV-TVADMIYHTAAVK-RGAPNCLIVTDLPFMSYATPEQA 94 (263)
T ss_pred EEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCc-CHHHHHHHHHHHH-hhCCCceEEeCCCcCCCCCHHHH
Confidence 44577788876677778899988764 1 1 12222 2233322 223445555322 24579
Q ss_pred HhcHHHHHhh--ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-------EEcccch-hhhcCCCCChHh--
Q 007349 358 IPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-------VATNMLE-SMIDHPTPTRAE-- 425 (607)
Q Consensus 358 v~NldeIl~~--sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi-------vaTqmLe-SM~~~~~PtrAE-- 425 (607)
++|...+++. +|+|=+--| ..+...+++..+.|+||. ..-..+- -.+....+.+++
T Consensus 95 ~~na~rl~~eaGa~aVkiEgg------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~ 162 (263)
T TIGR00222 95 LKNAARVMQETGANAVKLEGG------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKL 162 (263)
T ss_pred HHHHHHHHHHhCCeEEEEcCc------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecCCCHHHHHHH
Confidence 9999999984 889888533 223455688899999998 2112222 122222333333
Q ss_pred hhhHHHHHHhccceEEec
Q 007349 426 VSDIAIAVREGADAVMLS 443 (607)
Q Consensus 426 v~Dv~nav~~G~D~vmLs 443 (607)
+.|.-.....|+|+++|-
T Consensus 163 i~~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 163 LEDALALEEAGAQLLVLE 180 (263)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 555556667899998884
No 375
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.49 E-value=1.2e+02 Score=31.01 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=62.6
Q ss_pred EEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCC--------CcccCCCCC--C
Q 007349 321 YAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARG--------DLGAELPIE--D 386 (607)
Q Consensus 321 I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRG--------DLg~elg~e--~ 386 (607)
|.+=...++++...+.+.+-+.|-+. +=.-.-|+.+++.+.++.+. .+.++||-| +.+++.|.+ -
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi~~-iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGARV-FEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIV 96 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCCCE-EEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEE
Confidence 34434566666666655555544331 22234566677777666532 234666654 111122211 1
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 387 VPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 387 v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
-|..-..+++.|+++|.|++= ..-| -+++..|...|+|.+=|=-
T Consensus 97 sP~~~~~v~~~~~~~~i~~iP-----------G~~T---psEi~~A~~~Ga~~vKlFP 140 (222)
T PRK07114 97 TPLFNPDIAKVCNRRKVPYSP-----------GCGS---LSEIGYAEELGCEIVKLFP 140 (222)
T ss_pred CCCCCHHHHHHHHHcCCCEeC-----------CCCC---HHHHHHHHHCCCCEEEECc
Confidence 233457899999999999863 1222 3457799999999988753
No 376
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=40.43 E-value=1.3e+02 Score=27.42 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 007349 330 KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 330 ~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviv 407 (607)
==+...+++.+..|.++.|.|.=|+. +++-+...|.+++|| .+....+++-+.+...|+||-+
T Consensus 16 lLV~Km~~aA~~kg~~~~I~A~s~~e-----~~~~~~~~DvvLlGP----------Qv~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 16 LLVTKMKKAAESKGKDVTIEAYSETE-----LSEYIDNADVVLLGP----------QVRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred HHHHHHHHHHHhCCCceEEEEechhH-----HHHhhhcCCEEEECh----------HHHHHHHHHHHHhcccCCCeEE
Confidence 34667888888889999888865553 555555899999985 6788888999999999999976
No 377
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=40.36 E-value=1.4e+02 Score=25.42 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=42.3
Q ss_pred ceEEEecCCCCCCHHHHHHHH-HhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeec
Q 007349 101 TKIVCTIGPSTSSREMIWKLA-EEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDT 165 (607)
Q Consensus 101 TKIi~TiGPss~~~e~l~~li-~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl 165 (607)
-++.+=+.+ +.+=|.+..++ ..|+.+.|-.=++|.....+++++.+++ +..++|-.|-
T Consensus 10 ~~~~~lvS~-s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~------G~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALVSR-SRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE------GYSIAITPDG 68 (74)
T ss_pred CCEEEEEcc-CcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC------CCeEEEeCCC
Confidence 334443434 56677776655 5799999999889998888888887773 4788888883
No 378
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=40.17 E-value=2.5e+02 Score=29.86 Aligned_cols=118 Identities=16% Similarity=0.258 Sum_probs=74.0
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE-Ecccc--hh--hhc
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNML--ES--MID 417 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviv-aTqmL--eS--M~~ 417 (607)
..++|...+.+..-++.+..-+.. .+.||+.. -++|+++=...-+++++.|+..|..|=. -.++= |- ...
T Consensus 73 ~~VPValHLDH~~~~e~i~~ai~~GftSVM~Dg----S~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~ 148 (284)
T PRK12857 73 ASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDG----SKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVD 148 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcc
Confidence 468899999988765555444444 68899974 3467777778889999999999998710 00110 00 000
Q ss_pred CCCCChHhhhhHHHHHH-hccceEEecccccCCCCH---HHHHHHHHHHHHH
Q 007349 418 HPTPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFP---LKAVKVMHTVALR 465 (607)
Q Consensus 418 ~~~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~yP---veaV~~m~~I~~~ 465 (607)
...-..-...+...++. -|+|++-.+--|+.|.|+ ---.+.|.+|...
T Consensus 149 ~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~ 200 (284)
T PRK12857 149 EREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKEL 200 (284)
T ss_pred cchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHH
Confidence 00000111234456664 599999999999999995 3445555555443
No 379
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=39.94 E-value=2.5e+02 Score=29.50 Aligned_cols=97 Identities=18% Similarity=0.208 Sum_probs=54.0
Q ss_pred HHHHHhhHhcCCcEEEe-ccCC----Ch----hHHHHHHHHHHhcCCCceEEEeecChhh----HhcHHHHHhh------
Q 007349 307 WEDIKFGVDNQVDFYAV-SFVK----DA----KVVHELKDYLKSCNADIHVIVKIESADS----IPNLHSIISA------ 367 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~-SfV~----sa----~dv~~vr~~l~~~~~~i~IIAKIEt~~a----v~NldeIl~~------ 367 (607)
.+.+..|...|+|||-+ .|+. +. ....++-+|-++.+.+++|++-|--+.+ -..+++++..
T Consensus 92 ~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~ 171 (257)
T TIGR00259 92 VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGL 171 (257)
T ss_pred HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcC
Confidence 45677777789999987 4432 11 1223333444444568999986633322 3467777763
Q ss_pred ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Q 007349 368 SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVAT 409 (607)
Q Consensus 368 sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaT 409 (607)
+||+++. |...|.+.-+...+++-+ .....|+++++
T Consensus 172 aDavivt----G~~TG~~~d~~~l~~vr~--~~~~~Pvllgg 207 (257)
T TIGR00259 172 ADAVILS----GKTTGTEVDLELLKLAKE--TVKDTPVLAGS 207 (257)
T ss_pred CCEEEEC----cCCCCCCCCHHHHHHHHh--ccCCCeEEEEC
Confidence 7999996 333443322222222211 12357999973
No 380
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=39.90 E-value=3.6e+02 Score=26.08 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCH
Q 007349 309 DIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDV 387 (607)
Q Consensus 309 dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v 387 (607)
+++.+.+.|+|+|-++ ...-+...++..+ +....|-+-+-|. +.+.+..+. +|.+++++--=+..=+-..-
T Consensus 65 ~~~la~~~g~~GvHl~--~~~~~~~~~r~~~---~~~~~ig~s~h~~---~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~ 136 (196)
T TIGR00693 65 RVDLALALGADGVHLG--QDDLPASEARALL---GPDKIIGVSTHNL---EELAEAEAEGADYIGFGPIFPTPTKKDPAP 136 (196)
T ss_pred HHHHHHHcCCCEEecC--cccCCHHHHHHhc---CCCCEEEEeCCCH---HHHHHHhHcCCCEEEECCccCCCCCCCCCC
Q ss_pred HHHHHHHHHHHHHcC-CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHH
Q 007349 388 PLLQEDIIRRCRSMQ-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 459 (607)
Q Consensus 388 ~~~qk~II~~c~~aG-KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m 459 (607)
+.--+.+-+.+.... +|++..--+=. .++..+...|+|++.+.+.--.-..|.++++.|
T Consensus 137 ~~g~~~l~~~~~~~~~~pv~a~GGI~~-------------~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 137 PAGVELLREIAATSIDIPIVAIGGITL-------------ENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred CCCHHHHHHHHHhcCCCCEEEECCcCH-------------HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
No 381
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=39.85 E-value=3.1e+02 Score=27.45 Aligned_cols=93 Identities=13% Similarity=0.258 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHhhc-CC-CEEEEc--CChHHHHHHHh-----c---CCCCeEEEEeCCHHHH--------------hhh
Q 007349 488 GDMFAFHSTTMANTL-NT-PIIVFT--RTGSMAVILSH-----Y---RPSSTIFAFTNQERIK--------------QRL 541 (607)
Q Consensus 488 ~~~ia~~a~~~A~~l-~a-~Iiv~T--~sG~tA~~is~-----~---RP~~PIIAvT~d~~ta--------------RrL 541 (607)
.+.+..++-.+++.+ ++ .|+++- .||.+|+.++. | ||..|.++++.|..+. |+|
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql 103 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQV 103 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHH
Confidence 355666666666654 33 677765 45556777773 3 9999999998776654 443
Q ss_pred --ccCCCeEEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Q 007349 542 --VLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQS 586 (607)
Q Consensus 542 --~L~wGV~Pi~~~~~~d~d~~i~~Al~~ake~Gll~~GD~VVvvsg 586 (607)
.+..|=.-+.+..+-+.++ +..++++++++|. ++|.++|
T Consensus 104 ~~~~~~gDvli~iS~SG~s~~-v~~a~~~Ak~~G~-----~vI~IT~ 144 (196)
T PRK10886 104 RALGHAGDVLLAISTRGNSRD-IVKAVEAAVTRDM-----TIVALTG 144 (196)
T ss_pred HHcCCCCCEEEEEeCCCCCHH-HHHHHHHHHHCCC-----EEEEEeC
Confidence 3455555555555544444 5567788888654 6777766
No 382
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=39.84 E-value=6.9e+02 Score=29.37 Aligned_cols=188 Identities=15% Similarity=0.094 Sum_probs=107.6
Q ss_pred CCCHHhHHHHHhhH-hcCCcEEEe----------ccCCChhHHHHHHHHHHhcCCCceEEEe--ecChhhHhc-------
Q 007349 301 SITDKDWEDIKFGV-DNQVDFYAV----------SFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPN------- 360 (607)
Q Consensus 301 ~lt~kD~~dI~~al-~~gvD~I~~----------SfV~sa~dv~~vr~~l~~~~~~i~IIAK--IEt~~av~N------- 360 (607)
.++..|+..|..++ +.|++.|=+ +|+ +......++.+-+ ...++.+.+. -=|.-|..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~-~e~~~e~l~~l~~-~~~~~~l~~L~Rg~N~~G~~~ypddvv~ 94 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFL-NEDPWERLRELKK-ALPNTPLQMLLRGQNLLGYRHYADDVVE 94 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccC-CCCHHHHHHHHHH-hCCCCEEEEEEccccccccccCchhhHH
Confidence 57888886665444 568887644 676 3445556655433 2344554444 334444433
Q ss_pred --HHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhc
Q 007349 361 --LHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREG 436 (607)
Q Consensus 361 --ldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G 436 (607)
++.-++. .|.+-+. .+..++. -.+..++.++++|+.+-.+ + ++..+|.-+...+.+.+. +...|
T Consensus 95 ~~v~~a~~~Gvd~irif-------~~lnd~~-n~~~~i~~ak~~G~~v~~~---i-~~t~~p~~~~~~~~~~~~~~~~~G 162 (582)
T TIGR01108 95 RFVKKAVENGMDVFRIF-------DALNDPR-NLQAAIQAAKKHGAHAQGT---I-SYTTSPVHTLETYLDLAEELLEMG 162 (582)
T ss_pred HHHHHHHHCCCCEEEEE-------EecCcHH-HHHHHHHHHHHcCCEEEEE---E-EeccCCCCCHHHHHHHHHHHHHcC
Confidence 1222222 5665543 2222333 3566778999999877653 1 333455446666667665 45569
Q ss_pred cceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCChH
Q 007349 437 ADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRTGS 514 (607)
Q Consensus 437 ~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~sG~ 514 (607)
+|.+.|. +|+=.-.|.++-+.+..+..+.. ++..-+. |-...+|.+....|-+.|+-+|=-|-+|-
T Consensus 163 ad~I~i~-Dt~G~~~P~~v~~lv~~lk~~~~--~pi~~H~---------Hnt~Gla~An~laAveaGa~~vd~ai~Gl 228 (582)
T TIGR01108 163 VDSICIK-DMAGILTPKAAYELVSALKKRFG--LPVHLHS---------HATTGMAEMALLKAIEAGADGIDTAISSM 228 (582)
T ss_pred CCEEEEC-CCCCCcCHHHHHHHHHHHHHhCC--CceEEEe---------cCCCCcHHHHHHHHHHhCCCEEEeccccc
Confidence 9999995 99999999999888888865442 2111111 11223445555666666776554444443
No 383
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=39.82 E-value=1.2e+02 Score=31.28 Aligned_cols=119 Identities=24% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhhHhcHHHHHhhccEEEEc--CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHH
Q 007349 355 ADSIPNLHSIISASDGAMVA--RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIA 432 (607)
Q Consensus 355 ~~av~NldeIl~~sDGImIg--RGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na 432 (607)
.++++|+.+|-+.+|.-+|| --||--+ ||.+ +||..||.+++++
T Consensus 52 ~~gv~dIkai~~~v~vPIIGIiKrd~~~s----------------------~v~I------------TptlkeVd~L~~~ 97 (229)
T COG3010 52 IEGVEDIKAIRAVVDVPIIGIIKRDYPDS----------------------PVRI------------TPTLKEVDALAEA 97 (229)
T ss_pred ecchhhHHHHHhhCCCCeEEEEecCCCCC----------------------Ccee------------cccHHHHHHHHHC
Q ss_pred HHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCC
Q 007349 433 VREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRT 512 (607)
Q Consensus 433 v~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~s 512 (607)
|+|.+-+ +-..=+-|.. .+.+++.+ +++-..-- +++.-...-...|.++|+-||=-|-|
T Consensus 98 ---Ga~IIA~--DaT~R~RP~~---~~~~~i~~-~k~~~~l~------------MAD~St~ee~l~a~~~G~D~IGTTLs 156 (229)
T COG3010 98 ---GADIIAF--DATDRPRPDG---DLEELIAR-IKYPGQLA------------MADCSTFEEGLNAHKLGFDIIGTTLS 156 (229)
T ss_pred ---CCcEEEe--ecccCCCCcc---hHHHHHHH-hhcCCcEE------------EeccCCHHHHHHHHHcCCcEEecccc
Q ss_pred hHHH-------------HHHHhcCCCCeEEE
Q 007349 513 GSMA-------------VILSHYRPSSTIFA 530 (607)
Q Consensus 513 G~tA-------------~~is~~RP~~PIIA 530 (607)
|+|- +.+++ +.|++||
T Consensus 157 GYT~~~~~~~~pDf~lvk~l~~--~~~~vIA 185 (229)
T COG3010 157 GYTGYTEKPTEPDFQLVKQLSD--AGCRVIA 185 (229)
T ss_pred cccCCCCCCCCCcHHHHHHHHh--CCCeEEe
No 384
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=39.72 E-value=55 Score=34.20 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCCeeE
Q 007349 115 EMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVR 171 (607)
Q Consensus 115 e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR 171 (607)
+..++|+++|+++.=+|+.-...+++.++...|+.+.+.. .++|.+|+.-|++.
T Consensus 29 ~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~---~~plsIDT~~~~v~ 82 (261)
T PRK07535 29 KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV---DVPLCIDSPNPAAI 82 (261)
T ss_pred HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC---CCCEEEeCCCHHHH
Confidence 4567889999999999998666677888888888876544 35689998877654
No 385
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=39.62 E-value=4.7e+02 Score=27.43 Aligned_cols=121 Identities=13% Similarity=0.067 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCC-hHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPT-RAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 471 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~Pt-rAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 471 (607)
-+...|+..|.++.+. -|..+ ... ...-.-..|++.++...+. | .++.+...+++.+.++...
T Consensus 72 alA~~a~~~G~~~~iv---------vp~~~~~~~--~~~~~~~~Ga~v~~v~~~~----~-~~~~~~~~~~~~~~~~~~~ 135 (311)
T TIGR01275 72 ATALAAKKLGLDAVLV---------LREKEELNG--NLLLDKLMGAETRVYSAEE----Y-FEIMKYAEELAEELEKEGR 135 (311)
T ss_pred HHHHHHHHhCCceEEE---------ecCCccCCC--CHHHHHHcCCEEEEECchh----h-hhhHHHHHHHHHHHHhcCC
Confidence 3556899999998763 22111 111 1111346899998876421 1 1223444455554433211
Q ss_pred CCCCCCCccccCCCChh--HHHHHHHHHHHhhcC----C-CEEEEcCChHHHHHHHhc----CCCCeEEEEeC
Q 007349 472 VSITPPTQFSAHKSHMG--DMFAFHSTTMANTLN----T-PIIVFTRTGSMAVILSHY----RPSSTIFAFTN 533 (607)
Q Consensus 472 ~~~~~~~~~~~~~~~~~--~~ia~~a~~~A~~l~----a-~Iiv~T~sG~tA~~is~~----RP~~PIIAvT~ 533 (607)
....++... .++. +....-+.++.++++ . .||+..-||.|+--++++ +|.++||++-+
T Consensus 136 ~~~~~p~~~----~~~~~~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~ 204 (311)
T TIGR01275 136 KPYVIPVGG----SNSLGTLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAV 204 (311)
T ss_pred CeEEECCCC----CcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 000111100 1121 222223567777763 4 789999999998766554 89999998864
No 386
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.53 E-value=57 Score=34.69 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=46.2
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhh--HhcHHHHHhh-ccEEEEcC
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a--v~NldeIl~~-sDGImIgR 375 (607)
+.+++..+++.|+|.|.+=.. +++++.++..++.. +. +||-.-| ++|+.++++. +|.|.+|.
T Consensus 202 slee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~---~~----~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 202 RLDQIEPVLAAGVDTIMLDNF-SLDDLREGVELVDG---RA----IVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred CHHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhCC---Ce----EEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 457777888999999999765 78888887777642 22 5665544 4588888877 89999984
No 387
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=39.45 E-value=4e+02 Score=29.28 Aligned_cols=150 Identities=10% Similarity=0.149 Sum_probs=80.1
Q ss_pred CCHHhHHHH-HhhHhcCCcEEEe-------ccCCChhHHHHHHHHHHhc----CCCceEEEee--cChhhHhcHHHHHhh
Q 007349 302 ITDKDWEDI-KFGVDNQVDFYAV-------SFVKDAKVVHELKDYLKSC----NADIHVIVKI--ESADSIPNLHSIISA 367 (607)
Q Consensus 302 lt~kD~~dI-~~al~~gvD~I~~-------SfV~sa~dv~~vr~~l~~~----~~~i~IIAKI--Et~~av~NldeIl~~ 367 (607)
|+.+..+.+ .+.++.|+|+|.. +|..-.+.+..+++.++.. |....+++-| ++.+.+++.+...+.
T Consensus 143 ld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~~ 222 (367)
T cd08205 143 LSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVEA 222 (367)
T ss_pred CCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHHc
Confidence 455555333 5566789998832 3555556666666655443 4666677777 456777777777766
Q ss_pred -ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccc
Q 007349 368 -SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 446 (607)
Q Consensus 368 -sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 446 (607)
+|++|+.+.- .++.. +..+.+ ..+.|+..--.+.-.|..++.--..-..-.-=+-..|+|.++-. |
T Consensus 223 Gad~vmv~~~~----~g~~~----~~~l~~---~~~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~~--~ 289 (367)
T cd08205 223 GANALLINPNL----VGLDA----LRALAE---DPDLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIFP--G 289 (367)
T ss_pred CCCEEEEeccc----ccccH----HHHHHh---cCCCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCccccC--C
Confidence 8999997532 22222 222222 23777765444444443333211111111112334688887775 4
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 007349 447 AHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 447 a~G~yPveaV~~m~~I~~~ 465 (607)
..|+|+.. .+...++++.
T Consensus 290 ~~gk~~~~-~~~~~~la~~ 307 (367)
T cd08205 290 PGGRFPFS-REECLAIARA 307 (367)
T ss_pred CccCcCCC-HHHHHHHHHH
Confidence 56776533 3333344443
No 388
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=39.28 E-value=1.8e+02 Score=26.09 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=39.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChH----------HHHHHHHHHHHHHh
Q 007349 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHA----------SHQKTIDLVKEYNS 152 (607)
Q Consensus 99 r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~----------~~~~~i~~iR~~~~ 152 (607)
...+|..+..+...+.+.++.|.+.|++.+++++...+.+ .+.++++.++.+.+
T Consensus 75 ~~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 138 (166)
T PF04055_consen 75 RGIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKE 138 (166)
T ss_dssp TTEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH
T ss_pred cccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH
Confidence 3455555444444459999999999999999999999887 24556677776654
No 389
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=39.04 E-value=1e+02 Score=31.40 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=32.5
Q ss_pred hhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHH
Q 007349 425 EVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVAL 464 (607)
Q Consensus 425 Ev~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~ 464 (607)
.+.....++..|+|+++...--.....|.++++.+.+.+.
T Consensus 189 ~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 189 RVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred HHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 3556888999999999988777777889999988877554
No 390
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=38.92 E-value=2.1e+02 Score=25.82 Aligned_cols=76 Identities=20% Similarity=0.238 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHh--hccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 331 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS--ASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 331 dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~--~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
-+..+++++++.|-+..+.+ -++.++++.+. ..|.|++|| .+...++++-+.|...|+|+.+
T Consensus 17 la~k~k~~~~e~gi~~~i~a-----~~~~e~~~~~~~~~~DvIll~P----------Qi~~~~~~i~~~~~~~~ipv~~- 80 (104)
T PRK09590 17 MAKKTTEYLKEQGKDIEVDA-----ITATEGEKAIAAAEYDLYLVSP----------QTKMYFKQFEEAGAKVGKPVVQ- 80 (104)
T ss_pred HHHHHHHHHHHCCCceEEEE-----ecHHHHHHhhccCCCCEEEECh----------HHHHHHHHHHHHhhhcCCCEEE-
Confidence 35567888888776644433 35556766654 379999873 6888889999999999999987
Q ss_pred cccchhhhcCCCCChHh
Q 007349 409 TNMLESMIDHPTPTRAE 425 (607)
Q Consensus 409 TqmLeSM~~~~~PtrAE 425 (607)
++...+.|.|--+|
T Consensus 81 ---I~~~~Y~~~~~~~~ 94 (104)
T PRK09590 81 ---IPPQAYIPIPMGIE 94 (104)
T ss_pred ---eCHHHcCCCccCHH
Confidence 45666777776665
No 391
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=38.91 E-value=4.7e+02 Score=27.15 Aligned_cols=141 Identities=21% Similarity=0.268 Sum_probs=85.1
Q ss_pred CCHHhH-HHHHhhHh-cCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEE--eecChhhHhcHHHHHhh-----ccEEE
Q 007349 302 ITDKDW-EDIKFGVD-NQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-----SDGAM 372 (607)
Q Consensus 302 lt~kD~-~dI~~al~-~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIA--KIEt~~av~NldeIl~~-----sDGIm 372 (607)
.+++++ +.+..+.+ +++|+|=+-+-..-+++.++.++..+.| .|++ --|..-..+++.+++.. +|-+=
T Consensus 75 ~~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~---vI~SyH~F~~TP~~~~i~~~l~km~~~~aDivK 151 (231)
T COG0710 75 GSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKKHG---VIVSYHDFEKTPPLEEIIERLDKMESLGADIVK 151 (231)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhccccCC---EEEEeccCCCCCcHHHHHHHHHHHHhhCCCeEE
Confidence 455665 55555555 4699998876555556666666654433 3333 12333344455555543 46666
Q ss_pred EcCCCcccCCCC--CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceE--EecccccC
Q 007349 373 VARGDLGAELPI--EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAV--MLSGETAH 448 (607)
Q Consensus 373 IgRGDLg~elg~--e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~v--mLs~ETa~ 448 (607)
|+ -++- +++..+.+.....-. +++|+++- ||-..+.++|. ++.+. |.... .+...||-
T Consensus 152 iA------vm~~~~~DvL~ll~~~~~~~~-~~~p~i~i-----~MG~~G~~SRv-----~~~~~-GS~~tya~~~~~sAP 213 (231)
T COG0710 152 IA------VMPQSKEDVLDLLEATREFKE-AEKPVITI-----SMGKTGKISRV-----AGPVF-GSPITYASLDKPSAP 213 (231)
T ss_pred EE------ecCCCHHHHHHHHHHHHhccc-cCCCEEEE-----ecCCCCchhhh-----hHhhh-CCceeEeecCCCCCC
Confidence 64 2332 455555554433333 89999873 78888888884 34443 44443 46778999
Q ss_pred CCCHHHHHHHHHHHH
Q 007349 449 GKFPLKAVKVMHTVA 463 (607)
Q Consensus 449 G~yPveaV~~m~~I~ 463 (607)
|+.+++.++.+..+.
T Consensus 214 GQi~v~~l~~~~~~l 228 (231)
T COG0710 214 GQISVDELRKILTLL 228 (231)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999988877664
No 392
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=38.87 E-value=1.2e+02 Score=31.18 Aligned_cols=85 Identities=14% Similarity=0.006 Sum_probs=50.5
Q ss_pred HHHHhhHhcCCcEEEeccCCCh-----hHHHHHHHHHHhcCCCceEEEeecChhhHhcHH---HHHh-h-ccEEEEcCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDA-----KVVHELKDYLKSCNADIHVIVKIESADSIPNLH---SIIS-A-SDGAMVARGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa-----~dv~~vr~~l~~~~~~i~IIAKIEt~~av~Nld---eIl~-~-sDGImIgRGD 377 (607)
+.++...+.|+|.|.++-+.+. -++..++++.+.. ++++|+- -|+.+.+ ++++ - +||+++|+..
T Consensus 159 ~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~----GGi~s~~di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 159 EWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV--KIPVIAS----GGAGKPEHFYEAFTKGKADAALAASVF 232 (254)
T ss_pred HHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC--CCCEEEe----CCCCCHHHHHHHHHcCCcceeeEhHHH
Confidence 4445666889999888655431 1233344444332 4666662 2344444 4443 2 7999999876
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCE
Q 007349 378 LGAELPIEDVPLLQEDIIRRCRSMQKPV 405 (607)
Q Consensus 378 Lg~elg~e~v~~~qk~II~~c~~aGKPv 405 (607)
..-.++ .+.+.+.|+++|.|+
T Consensus 233 ~~~~~~-------~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 233 HYREIT-------IGEVKEYLAERGIPV 253 (254)
T ss_pred hCCCCC-------HHHHHHHHHHCCCcc
Confidence 655555 345677778888775
No 393
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=38.84 E-value=1.1e+02 Score=31.53 Aligned_cols=63 Identities=19% Similarity=0.124 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEec
Q 007349 488 GDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQ 553 (607)
Q Consensus 488 ~~~ia~~a~~~A~~l~a~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~ 553 (607)
...||..|.++-.. .=.+|=.+|.|...++++-|..++-++|++..++..|.-..++.-++..
T Consensus 80 K~~IA~~Aa~lI~~---gd~Ifld~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~~~~vil~G 142 (240)
T PRK10411 80 KADIAREALAWIEE---GMVIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSG 142 (240)
T ss_pred HHHHHHHHHHhCCC---CCEEEEcCcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcCCCCEEEEEC
Confidence 45677766655443 2256667999999999999887999999999999998877777755543
No 394
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=38.77 E-value=1.1e+02 Score=30.96 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=42.9
Q ss_pred EEecCCCEEEEEecC--CCC--Ccc-eEeccccccc--cccCCCCEEEEeCCccceeeeccccccccccccccccCCCcc
Q 007349 179 IILKEGQEFNFTIKR--GVS--TED-TVSVNYDDFV--NDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTS 251 (607)
Q Consensus 179 i~l~~G~~v~l~~~~--~~~--~~~-~i~v~~~~~~--~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 251 (607)
.-++.|+++.++... ..+ +++ ...|+-+.|. ..+++|+.++.+.
T Consensus 50 ~G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~----------------------------- 100 (196)
T PRK10737 50 EGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAET----------------------------- 100 (196)
T ss_pred cCCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeC-----------------------------
Confidence 356799999998752 222 222 3445555553 3589999998871
Q ss_pred cccccccCceEEEEEEEEeCCeEEE
Q 007349 252 CFLLSIQGGMMSLAVKSKTKDLVKC 276 (607)
Q Consensus 252 ~~~~s~~DG~i~l~V~~~~~~~i~c 276 (607)
.+|.+.++|++++++.|+.
T Consensus 101 ------~~G~~~~~V~ev~~d~V~v 119 (196)
T PRK10737 101 ------DQGPVPVEITAVEDDHVVV 119 (196)
T ss_pred ------CCCcEEEEEEEEcCCEEEE
Confidence 1788899999999888653
No 395
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=38.65 E-value=4.4e+02 Score=27.21 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEcccchhhhcCCCCChHhhhhHHHHH-HhccceEEeccc
Q 007349 387 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGE 445 (607)
Q Consensus 387 v~~~qk~II~~c~~a-GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~E 445 (607)
-+....+++++.++. ++|+++= ..+..+..|..+++.++ ..|+|++.+++=
T Consensus 146 ~~~~~~eiv~~vr~~~~~pv~vK--------l~~~~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 146 DPEAVANLLKAVKAAVDIPLLVK--------LSPYFDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred CHHHHHHHHHHHHHccCCCEEEE--------eCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 455667777777766 8998872 23444555666666644 569999999754
No 396
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=38.56 E-value=3.7e+02 Score=27.48 Aligned_cols=118 Identities=20% Similarity=0.194 Sum_probs=66.6
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHh-hccEEEE-cC-CCcccCCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-ASDGAMV-AR-GDLGAELPI 384 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~-~sDGImI-gR-GDLg~elg~ 384 (607)
+-++.+.+.|+|++.++-. ..++..++.+.+.+.|-+..++..=.| -.+.+..|++ ..|.|.+ ++ |=-|..-+.
T Consensus 95 ~fi~~~~~aG~~giiipDl-~~ee~~~~~~~~~~~g~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~ 171 (242)
T cd04724 95 RFLRDAKEAGVDGLIIPDL-PPEEAEEFREAAKEYGLDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTEL 171 (242)
T ss_pred HHHHHHHHCCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccCC
Confidence 4466677899999999544 246777788888887766555554444 3567888888 4554443 32 222222222
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 385 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 385 e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.+...+.+-+..+...+|+.+. ...-+.+. +..+... +|++...
T Consensus 172 --~~~~~~~i~~lr~~~~~pI~vg---------gGI~~~e~---~~~~~~~-ADgvVvG 215 (242)
T cd04724 172 --PDDLKELIKRIRKYTDLPIAVG---------FGISTPEQ---AAEVAKY-ADGVIVG 215 (242)
T ss_pred --ChhHHHHHHHHHhcCCCcEEEE---------ccCCCHHH---HHHHHcc-CCEEEEC
Confidence 1222233322233347888873 33333333 3344445 8887764
No 397
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=38.33 E-value=95 Score=34.25 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=46.1
Q ss_pred HHHHHhhHhcCCcEEEeccCC------ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCC
Q 007349 307 WEDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARG 376 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~------sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRG 376 (607)
.+|++.+.+.|+|+|.+|-.- .+..+..+.+..+..+.++.||+- -||.+-.+|++. +|++||||.
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcHH
Confidence 567778889999999887421 123345555555445556788873 366666666665 899999996
Q ss_pred Cc
Q 007349 377 DL 378 (607)
Q Consensus 377 DL 378 (607)
=|
T Consensus 315 ~l 316 (367)
T TIGR02708 315 VI 316 (367)
T ss_pred HH
Confidence 44
No 398
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=38.30 E-value=2.7e+02 Score=29.33 Aligned_cols=48 Identities=38% Similarity=0.480 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEEecc
Q 007349 387 VPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSG 444 (607)
Q Consensus 387 v~~~qk~II~~c~~a-GKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ 444 (607)
-+..-.+|+++.++. ++|+++ +- .|...++.+++. +...|+|++.+++
T Consensus 152 ~~~~~~~iv~~v~~~~~~Pv~v---------Kl-~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 152 DPELVEEICRWVREAVKIPVIA---------KL-TPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred CHHHHHHHHHHHHHhcCCCeEE---------EC-CCCchhHHHHHHHHHHcCCCEEEEec
Confidence 356667788877754 789988 32 344445666666 5567999999864
No 399
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=38.13 E-value=4.4e+02 Score=26.66 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=75.2
Q ss_pred hHHHHHhhHhcCCcEEEec-------cCCChhHHHHHHHHHHhcCCCceEEEeecChhh------------HhcHHHHHh
Q 007349 306 DWEDIKFGVDNQVDFYAVS-------FVKDAKVVHELKDYLKSCNADIHVIVKIESADS------------IPNLHSIIS 366 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~S-------fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a------------v~NldeIl~ 366 (607)
+.+++..|.+.|+|-|=+- ...|..-+..+++ ..+++|.++|--+.| .+.+....+
T Consensus 9 s~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~-----~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 9 SLEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQARE-----AVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SHHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHH-----HTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHh-----hcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 3567777888899977542 1223344444443 346889999976655 122222222
Q ss_pred h-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccc
Q 007349 367 A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 445 (607)
Q Consensus 367 ~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 445 (607)
. +||+.+|- |.-+-. -+. ...++++..|. |.|+.+- |..-..|.+.+ .+-..+..|+|.|+-||-
T Consensus 84 ~GadG~VfG~--L~~dg~-iD~-~~~~~Li~~a~--~~~~tFH------RAfD~~~d~~~--al~~L~~lG~~rVLTSGg 149 (201)
T PF03932_consen 84 LGADGFVFGA--LTEDGE-IDE-EALEELIEAAG--GMPVTFH------RAFDEVPDPEE--ALEQLIELGFDRVLTSGG 149 (201)
T ss_dssp TT-SEEEE----BETTSS-B-H-HHHHHHHHHHT--TSEEEE-------GGGGGSSTHHH--HHHHHHHHT-SEEEESTT
T ss_pred cCCCeeEEEe--ECCCCC-cCH-HHHHHHHHhcC--CCeEEEe------CcHHHhCCHHH--HHHHHHhcCCCEEECCCC
Confidence 2 79999984 211111 112 34456666664 8888772 23333444444 234556679999998765
Q ss_pred ccCCCCHHHHHHHHHHHHHHhhcC
Q 007349 446 TAHGKFPLKAVKVMHTVALRTESS 469 (607)
Q Consensus 446 Ta~G~yPveaV~~m~~I~~~aE~~ 469 (607)
. ....+.+..|++++..+...
T Consensus 150 ~---~~a~~g~~~L~~lv~~a~~~ 170 (201)
T PF03932_consen 150 A---PTALEGIENLKELVEQAKGR 170 (201)
T ss_dssp S---SSTTTCHHHHHHHHHHHTTS
T ss_pred C---CCHHHHHHHHHHHHHHcCCC
Confidence 4 22336677788888777654
No 400
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=38.12 E-value=1.6e+02 Score=29.61 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=40.3
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEe--ecChhhHhcHHHHHhh-ccEEEEcCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVK--IESADSIPNLHSIISA-SDGAMVARGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAK--IEt~~av~NldeIl~~-sDGImIgRGD 377 (607)
+++..+.+.|+|+|.+ |-...-....++.+.+....++++++- | -.+|+.+.++. +|++-++.+=
T Consensus 115 ~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~~~~ipvvaiGGI----~~~n~~~~~~aGa~~vav~s~l 182 (206)
T PRK09140 115 TEAFAALRAGAQALKL-FPASQLGPAGIKALRAVLPPDVPVFAVGGV----TPENLAPYLAAGAAGFGLGSAL 182 (206)
T ss_pred HHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhcCCCCeEEEECCC----CHHHHHHHHHCCCeEEEEehHh
Confidence 4466778899999987 332222333444443332224666662 2 23789999988 8999987543
No 401
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=38.11 E-value=2.8e+02 Score=29.48 Aligned_cols=114 Identities=14% Similarity=0.235 Sum_probs=75.2
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEE-EEcccc---hh----
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNML---ES---- 414 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqmL---eS---- 414 (607)
..++|...+.+..-++.+..=++. .+.||+.- -.+|+++=...-+++++.|++.|.+|= =-.++- +.
T Consensus 71 ~~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg----S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~ 146 (282)
T TIGR01858 71 YNMPLALHLDHHESLDDIRQKVHAGVRSAMIDG----SHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVD 146 (282)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEeecC----CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccc
Confidence 468899999888766555444444 68999973 356787878888999999999999871 111110 00
Q ss_pred h--hcCCCCChHhhhhHHHHH-HhccceEEecccccCCCCH---HHHHHHHHHHHHHh
Q 007349 415 M--IDHPTPTRAEVSDIAIAV-REGADAVMLSGETAHGKFP---LKAVKVMHTVALRT 466 (607)
Q Consensus 415 M--~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~ETa~G~yP---veaV~~m~~I~~~a 466 (607)
. ..-..| .+...++ .-|+|++-.+--|+.|.|+ .--.+.|.+|....
T Consensus 147 ~~~~~~T~p-----eea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~ 199 (282)
T TIGR01858 147 EEDALYTDP-----QEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV 199 (282)
T ss_pred cchhccCCH-----HHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh
Confidence 0 001122 2334555 4799999999999999994 45556666665444
No 402
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=38.07 E-value=89 Score=29.67 Aligned_cols=97 Identities=13% Similarity=0.152 Sum_probs=58.7
Q ss_pred HhhHhcCCcEEEeccCCCh------hHHHHHHHHHHhcCCCceEEE-eecC--------------hhhHhcHHHHHhh--
Q 007349 311 KFGVDNQVDFYAVSFVKDA------KVVHELKDYLKSCNADIHVIV-KIES--------------ADSIPNLHSIISA-- 367 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa------~dv~~vr~~l~~~~~~i~IIA-KIEt--------------~~av~NldeIl~~-- 367 (607)
+++.+.|+++|-+.+...- .++.++++++++.|-.+..+. .... .++++.+.+.++.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 4667888998887654332 346688888888775533222 1111 2336666666654
Q ss_pred ---ccEEEEcCC--CcccCCCC----CCHHHHHHHHHHHHHHcCCCEEE
Q 007349 368 ---SDGAMVARG--DLGAELPI----EDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 368 ---sDGImIgRG--DLg~elg~----e~v~~~qk~II~~c~~aGKPviv 407 (607)
++.+.+..| +....... +.+....+++.+.|.+.|.-+.+
T Consensus 82 ~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 688888877 33222222 34555567888888888966554
No 403
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=37.98 E-value=1.5e+02 Score=28.96 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=58.9
Q ss_pred HHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCcccCC
Q 007349 307 WEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAEL 382 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDLg~el 382 (607)
.+++..+++.|+|+|..+. +-.+ +.++.+.. ...++. |+.+++|+..+ +|.|.+-+.+.
T Consensus 66 ~~~~~~a~~~Ga~~i~~p~--~~~~---~~~~~~~~--~~~~i~------gv~t~~e~~~A~~~Gad~i~~~p~~~---- 128 (190)
T cd00452 66 PEQADAAIAAGAQFIVSPG--LDPE---VVKAANRA--GIPLLP------GVATPTEIMQALELGADIVKLFPAEA---- 128 (190)
T ss_pred HHHHHHHHHcCCCEEEcCC--CCHH---HHHHHHHc--CCcEEC------CcCCHHHHHHHHHCCCCEEEEcCCcc----
Confidence 3456677889999998763 2233 33333332 345665 44466666554 79999855321
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccc
Q 007349 383 PIEDVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 446 (607)
Q Consensus 383 g~e~v~~~qk~II~~c~~a-GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 446 (607)
. .+...+.+ +... +.|++. .... + ..++..+...|+|++.+++..
T Consensus 129 --~-g~~~~~~l---~~~~~~~p~~a---------~GGI-~---~~n~~~~~~~G~~~v~v~s~i 174 (190)
T cd00452 129 --V-GPAYIKAL---KGPFPQVRFMP---------TGGV-S---LDNAAEWLAAGVVAVGGGSLL 174 (190)
T ss_pred --c-CHHHHHHH---HhhCCCCeEEE---------eCCC-C---HHHHHHHHHCCCEEEEEchhc
Confidence 1 22222332 2222 467665 2232 2 235668889999999987543
No 404
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.84 E-value=63 Score=36.31 Aligned_cols=89 Identities=20% Similarity=0.287 Sum_probs=64.7
Q ss_pred EcCCCcccCCCC-CCHHHHHHHHHHHHHHcCCCEEEE--cccchhhhcCCCCChHhhhhHHHHHHhccceEEeccc-ccC
Q 007349 373 VARGDLGAELPI-EDVPLLQEDIIRRCRSMQKPVIVA--TNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE-TAH 448 (607)
Q Consensus 373 IgRGDLg~elg~-e~v~~~qk~II~~c~~aGKPviva--TqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E-Ta~ 448 (607)
+|.|+.-+.=|+ +-|+...-++++.|=..+|--|+| |=+.|. ..+. .-+.|-+..++|| .++||-+ ...
T Consensus 274 LA~GEpP~~kGYppSVF~~LP~LlERaG~~~~GsITafYTVLveG----DD~~-dPiaD~~RsILDG--HIvLsR~LA~~ 346 (441)
T COG1157 274 LAAGEPPATKGYPPSVFSELPRLLERAGNGDKGSITAFYTVLVEG----DDMN-DPIADEVRSILDG--HIVLSRALAEA 346 (441)
T ss_pred HhcCCCCccCCCCchHHHHhHHHHhhcCCCCCCcEEEEEEEEeec----CCCC-Cchhhhhhhhccc--eEEeeHhHHhc
Confidence 456666666555 468888888888887777776654 333332 2222 2288899999999 7999999 889
Q ss_pred CCCHHHHHHHHHHHHHHhhcCC
Q 007349 449 GKFPLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 449 G~yPveaV~~m~~I~~~aE~~~ 470 (607)
|.|| ||..+.+|.+-+.+..
T Consensus 347 ghyP--aIdvl~SiSRvm~~i~ 366 (441)
T COG1157 347 GHYP--AIDVLASISRVMPQIV 366 (441)
T ss_pred CCCC--CcchHHHHHHHhhhcC
Confidence 9999 8999999988888654
No 405
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=37.77 E-value=4.2e+02 Score=26.31 Aligned_cols=143 Identities=10% Similarity=0.194 Sum_probs=70.9
Q ss_pred HhhHhcCCcEEEeccC-----CChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCC
Q 007349 311 KFGVDNQVDFYAVSFV-----KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPI 384 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV-----~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~ 384 (607)
+.-.++|+|.+.+.-. ....+...+++..+..+-.+.+-.-|-+. +.++++++. +|.+++|+.=|
T Consensus 36 ~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~---e~~~~~~~~Gad~vvigs~~l------ 106 (234)
T cd04732 36 KKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRSL---EDIERLLDLGVSRVIIGTAAV------ 106 (234)
T ss_pred HHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCCH---HHHHHHHHcCCCEEEECchHH------
Confidence 3344679998766522 23334444555444443334444466554 344555545 89999986433
Q ss_pred CCHHHHHHHHHHHHHHcCC-CEEEEcccchh-h-hcC-CCCChHhhhhHH-HHHHhccceEEecccccCCCCHHHHHHHH
Q 007349 385 EDVPLLQEDIIRRCRSMQK-PVIVATNMLES-M-IDH-PTPTRAEVSDIA-IAVREGADAVMLSGETAHGKFPLKAVKVM 459 (607)
Q Consensus 385 e~v~~~qk~II~~c~~aGK-PvivaTqmLeS-M-~~~-~~PtrAEv~Dv~-nav~~G~D~vmLs~ETa~G~yPveaV~~m 459 (607)
++ |...+++ +++.|+ +++++--+-.+ . ... ...+..+..+.+ .+...|+|.+.+.+-+..|.+.-.-.+.+
T Consensus 107 ~d-p~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i 182 (234)
T cd04732 107 KN-PELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELY 182 (234)
T ss_pred hC-hHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHH
Confidence 12 3333333 345566 55554211110 0 000 001111222333 34566899999987777666544335555
Q ss_pred HHHHHHh
Q 007349 460 HTVALRT 466 (607)
Q Consensus 460 ~~I~~~a 466 (607)
..++...
T Consensus 183 ~~i~~~~ 189 (234)
T cd04732 183 KELAAAT 189 (234)
T ss_pred HHHHHhc
Confidence 6665443
No 406
>PTZ00344 pyridoxal kinase; Provisional
Probab=37.38 E-value=2.4e+02 Score=29.59 Aligned_cols=111 Identities=12% Similarity=0.147 Sum_probs=68.9
Q ss_pred CCCCCCHHhHHHHHhhH-----hcCCcEEEeccCCChhHHHHHHHHHHh---cCCCceEEEe---------ecChhhHhc
Q 007349 298 NLPSITDKDWEDIKFGV-----DNQVDFYAVSFVKDAKVVHELKDYLKS---CNADIHVIVK---------IESADSIPN 360 (607)
Q Consensus 298 ~lp~lt~kD~~dI~~al-----~~gvD~I~~SfV~sa~dv~~vr~~l~~---~~~~i~IIAK---------IEt~~av~N 360 (607)
..|.+++.+.+++...+ ...++.|...++.+++.+..+.++++. .+.++.++.= .-..+..+.
T Consensus 53 ~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~~ 132 (296)
T PTZ00344 53 KGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVDA 132 (296)
T ss_pred cCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHHH
Confidence 45678887777765544 235688989999999999999888863 2323344322 234556666
Q ss_pred HHHHHhhccEEEEcCCCcccCCCCC--CHHHHHHHHHHHHHHcCCCEEEEc
Q 007349 361 LHSIISASDGAMVARGDLGAELPIE--DVPLLQEDIIRRCRSMQKPVIVAT 409 (607)
Q Consensus 361 ldeIl~~sDGImIgRGDLg~elg~e--~v~~~qk~II~~c~~aGKPvivaT 409 (607)
+.+++..+|.+....-++..=.|.+ ....+ ++..++..+.|.+.++.|
T Consensus 133 ~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~-~~~~~~l~~~g~~~VvVT 182 (296)
T PTZ00344 133 YRELIPYADVITPNQFEASLLSGVEVKDLSDA-LEAIDWFHEQGIPVVVIT 182 (296)
T ss_pred HHHHhhhCCEEeCCHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCCCEEEEE
Confidence 7788888999888877665444432 22222 233344444566655444
No 407
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=37.37 E-value=91 Score=32.00 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEccc
Q 007349 333 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNM 411 (607)
Q Consensus 333 ~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqm 411 (607)
..+++.+.+.|+++.|.+.-+... -+|+++++.. .|.|+.+-. -......+.+.|++.++|+|.+
T Consensus 68 e~~~~~l~~inP~~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD----------~~~~k~~L~~~c~~~~ip~I~s--- 133 (231)
T cd00755 68 EVMAERIRDINPECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAID----------SIRAKVALIAYCRKRKIPVISS--- 133 (231)
T ss_pred HHHHHHHHHHCCCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcCC----------CHHHHHHHHHHHHHhCCCEEEE---
Confidence 446777877788766655433322 2577777753 677776521 2345567899999999999874
Q ss_pred chhhhcCCCCChHhhhhHHHH
Q 007349 412 LESMIDHPTPTRAEVSDIAIA 432 (607)
Q Consensus 412 LeSM~~~~~PtrAEv~Dv~na 432 (607)
-+.-....||+-++.|++..
T Consensus 134 -~g~g~~~dp~~i~i~di~~t 153 (231)
T cd00755 134 -MGAGGKLDPTRIRVADISKT 153 (231)
T ss_pred -eCCcCCCCCCeEEEccEecc
Confidence 12223457999888887443
No 408
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=37.21 E-value=21 Score=36.66 Aligned_cols=83 Identities=24% Similarity=0.374 Sum_probs=47.3
Q ss_pred CCCC--CCHHHHHHHHHhCCcEEEEecCCCChHH-------HHHHHHHHHHHHhhcCCceEEEEeecCCCeeEeecCCCc
Q 007349 108 GPST--SSREMIWKLAEEGMNVARLNMSHGDHAS-------HQKTIDLVKEYNSQFEDKAVAIMLDTKGPEVRSGDVPQP 178 (607)
Q Consensus 108 GPss--~~~e~l~~li~aGm~v~RiN~sHg~~~~-------~~~~i~~iR~~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~ 178 (607)
||.+ .+.+++++-.++|+.-. +--||--+.. .++-...+|+..++-. -+
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~i-VaTsHh~~g~y~n~~~~v~~~~~~ln~~~~~~a---------------------id 72 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKI-VATSHHLHGRYENPIEKVKEKANQLNEILKKEA---------------------ID 72 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEE-eecccccCCccCChHHHHHHHHHHHHHHHHhhc---------------------CC
Confidence 6765 45667888888898753 2345433322 3333333333333222 24
Q ss_pred EEecCCCEEEEEecCCCCCcceEeccccccccccCCCCEEEEeCCccce
Q 007349 179 IILKEGQEFNFTIKRGVSTEDTVSVNYDDFVNDVEVGDILLVDDHTMFL 227 (607)
Q Consensus 179 i~l~~G~~v~l~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~id~~~~~~ 227 (607)
+.+-+||+++++. +.+++++.|+..-|+|..|.|
T Consensus 73 l~v~pGQEIrIt~---------------~vl~~l~~g~I~tindskYlL 106 (254)
T COG4464 73 LKVLPGQEIRITG---------------DVLDDLDKGIILTINDSKYLL 106 (254)
T ss_pred ceeccCceEEEch---------------HHHHHHhcCccccccccceEE
Confidence 6778888888874 345666777777666444333
No 409
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=37.11 E-value=2.8e+02 Score=30.63 Aligned_cols=125 Identities=9% Similarity=0.119 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.++.+. .|....-..+.+.-..|++.+...+ .+-++++.+.+++.+...++..
T Consensus 130 alA~~a~~~G~~~~Iv-----------vp~~~~~~k~~~i~~~GA~Vi~v~~------~~~~~~~~a~~~~~~~g~~~v~ 192 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY-----------MPKGSSEERVDAIRALGAECIITDG------NYDDSVRLAAQEAQENGWVVVQ 192 (399)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC------CHHHHHHHHHHHHHHcCCEEec
Confidence 3566789999999773 2333333345567788999776642 3557777777765442211111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC-----C-CEEEEcCChHHHHHHHhcC------CCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN-----T-PIIVFTRTGSMAVILSHYR------PSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~-----a-~Iiv~T~sG~tA~~is~~R------P~~PIIAvT~d~ 535 (607)
...++. .......+.+-..--+.++.++++ . .|||.+-+|.++.-++++- |...|+++-|..
T Consensus 193 ~~~~~~-~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~g 266 (399)
T PRK08206 193 DTAWEG-YEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQ 266 (399)
T ss_pred CccccC-cccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCC
Confidence 100110 000001122233334456666653 4 6888888998877665432 356799998854
No 410
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=37.10 E-value=3.5e+02 Score=28.97 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=70.3
Q ss_pred hhHhcCCcEEEeccCCChhHHHH---HHHHHHhcCCCceEEEeecC--hhhHhcHHHHHhh--ccEEEEcCCCcccCCCC
Q 007349 312 FGVDNQVDFYAVSFVKDAKVVHE---LKDYLKSCNADIHVIVKIES--ADSIPNLHSIISA--SDGAMVARGDLGAELPI 384 (607)
Q Consensus 312 ~al~~gvD~I~~SfV~sa~dv~~---vr~~l~~~~~~i~IIAKIEt--~~av~NldeIl~~--sDGImIgRGDLg~elg~ 384 (607)
.+.++|+++..-.||.....+.. -+..+.......++++||-. ++.+...-.++.. +|+|= |-+.+|.
T Consensus 28 l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~Id-----lN~gCP~ 102 (321)
T PRK10415 28 LCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIID-----INMGCPA 102 (321)
T ss_pred HHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEE-----EeCCCCH
Confidence 45578999877788866443321 11222222333556788853 3333223333222 45553 4444553
Q ss_pred C------------CHHHHHHHHHHHHHHc-CCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhccceEEecccccCCC
Q 007349 385 E------------DVPLLQEDIIRRCRSM-QKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREGADAVMLSGETAHGK 450 (607)
Q Consensus 385 e------------~v~~~qk~II~~c~~a-GKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G~D~vmLs~ETa~G~ 450 (607)
. +-|..-++|+++.+++ ++|+.+=.. ..-.++..+..+.+. +...|+|++.+.+-|..+.
T Consensus 103 ~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR------~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~ 176 (321)
T PRK10415 103 KKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIR------TGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACL 176 (321)
T ss_pred HHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEE------ccccCCcchHHHHHHHHHHhCCCEEEEecCccccc
Confidence 2 2256667777777654 789876322 222333334555554 4567999999998886554
Q ss_pred C
Q 007349 451 F 451 (607)
Q Consensus 451 y 451 (607)
|
T Consensus 177 ~ 177 (321)
T PRK10415 177 F 177 (321)
T ss_pred c
Confidence 4
No 411
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=37.02 E-value=2e+02 Score=30.01 Aligned_cols=90 Identities=21% Similarity=0.268 Sum_probs=51.9
Q ss_pred ccEEEEcCCCcc--cCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh-hhhHHHHHHhccceEEecc
Q 007349 368 SDGAMVARGDLG--AELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 368 sDGImIgRGDLg--~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~D~vmLs~ 444 (607)
+||+++. |--| ..+..++-..+.+.+++.+ +-..|+++. ....+-.| +...-.+-..|+|++|+..
T Consensus 36 v~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~g---------v~~~~~~~~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 36 TDGLVVV-GTTGESPTLTHEEHEELIRAVVEAV-NGRVPVIAG---------TGSNSTAEAIELTKFAEKAGADGALVVT 104 (292)
T ss_pred CCEEEEC-CcCCccccCCHHHHHHHHHHHHHHh-CCCCcEEee---------cCCchHHHHHHHHHHHHHcCCCEEEECC
Confidence 8999974 2211 2233334333333444433 224677763 22333445 4444455667999999976
Q ss_pred cccCCCCHHHHHHHHHHHHHHhhc
Q 007349 445 ETAHGKFPLKAVKVMHTVALRTES 468 (607)
Q Consensus 445 ETa~G~yPveaV~~m~~I~~~aE~ 468 (607)
=.-....+-+.+++...|+..++-
T Consensus 105 P~~~~~~~~~i~~~~~~ia~~~~~ 128 (292)
T PRK03170 105 PYYNKPTQEGLYQHFKAIAEATDL 128 (292)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCCC
Confidence 544444567889999999987753
No 412
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=36.90 E-value=3.1e+02 Score=29.23 Aligned_cols=128 Identities=9% Similarity=0.042 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHh---hhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE---VSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESS 469 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE---v~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~ 469 (607)
-+...|+..|.++.+-. -....+...+ -......-..|+..+....+ .+..++. ...+.+..+.
T Consensus 80 alA~~a~~~G~~~~i~v------p~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~----~~~~~~~---~~~a~~l~~~ 146 (331)
T PRK03910 80 QTAAAAAKLGLKCVLLL------ENPVPTEAENYLANGNVLLDDLFGAEIHVVPAG----TDMDAQL---EELAEELRAQ 146 (331)
T ss_pred HHHHHHHHhCCcEEEEE------cCCCCcccccccCCCcHHHHHHcCCEEEEeCcc----chHHHHH---HHHHHHHHHc
Confidence 45567999999987631 1111111110 01233456789998888654 2332322 2223322222
Q ss_pred CCCCCCCCCccccCCCChhHHHHHHHHHHHhhcC-----C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 470 LPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLN-----T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~-----a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
.+.....+.... ...-.+....-+.++.++++ . .||+..-+|.|+.-++ .++|.++|+++-+..
T Consensus 147 ~~~~~~~~~~~~--~~~~~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~ 220 (331)
T PRK03910 147 GRRPYVIPVGGS--NALGALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSR 220 (331)
T ss_pred CCceEEECCCCC--CchhHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 110000110000 00011111123446666553 4 7889999999985554 457999999999853
No 413
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=36.70 E-value=97 Score=31.79 Aligned_cols=59 Identities=14% Similarity=0.280 Sum_probs=38.0
Q ss_pred HHhhHhcCCcEEEeccCCChhHH--------HHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEc
Q 007349 310 IKFGVDNQVDFYAVSFVKDAKVV--------HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVA 374 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~sa~dv--------~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIg 374 (607)
...|.+.|++||+ |||.+-+|. .++.+.+...+.+..|++ .+++|.++++++ +|.+=+.
T Consensus 119 a~~Aa~aGa~yvs-PyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILa-----AS~r~~~~v~~a~~~G~d~vTvp 189 (222)
T PRK12656 119 GLLAIEAGADYLA-PYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILA-----ASFKNVAQVNKAFALGAQAVTAG 189 (222)
T ss_pred HHHHHHCCCCEEe-cccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEE-----EecCCHHHHHHHHHcCCCEEecC
Confidence 3456678999875 799886553 344555656666677666 466777777654 4555443
No 414
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=36.66 E-value=1.7e+02 Score=31.33 Aligned_cols=62 Identities=19% Similarity=0.298 Sum_probs=41.2
Q ss_pred CceEEEecCCCCCCH----HHHHHHHHhCCcEEEEecCCCC-----hHHHHHHHHHHHHHHhhcCCceEEEEeec
Q 007349 100 KTKIVCTIGPSTSSR----EMIWKLAEEGMNVARLNMSHGD-----HASHQKTIDLVKEYNSQFEDKAVAIMLDT 165 (607)
Q Consensus 100 ~TKIi~TiGPss~~~----e~l~~li~aGm~v~RiN~sHg~-----~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl 165 (607)
+...-+|+|....++ +..+++.++|.+.+.+...|+. .+.-.+.++.+|+ .++ ..+.+++|.
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~---~~g-~~~~l~vDa 196 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVRE---AVG-PDVDLMVDA 196 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHH---hhC-CCCEEEEEC
Confidence 455567776654234 3566778899999999999886 5555566666664 444 455677775
No 415
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=36.66 E-value=3.7e+02 Score=29.10 Aligned_cols=89 Identities=20% Similarity=0.256 Sum_probs=48.7
Q ss_pred CceEEEeecChhhHhcHHHHHhh-----ccEEEEcC----CC-c-----ccCCC-C---CCHHHHHHHHHHHHHHc--CC
Q 007349 345 DIHVIVKIESADSIPNLHSIISA-----SDGAMVAR----GD-L-----GAELP-I---EDVPLLQEDIIRRCRSM--QK 403 (607)
Q Consensus 345 ~i~IIAKIEt~~av~NldeIl~~-----sDGImIgR----GD-L-----g~elg-~---e~v~~~qk~II~~c~~a--GK 403 (607)
+++|++|+=---.-+++.++++. +|||.+.= .+ + +...| + .--+.+.+.+-...+.. ..
T Consensus 210 ~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~i 289 (335)
T TIGR01036 210 RVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRL 289 (335)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCC
Confidence 38999999432222356666653 69987631 01 0 10111 1 12334444444444444 36
Q ss_pred CEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEeccc
Q 007349 404 PVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGE 445 (607)
Q Consensus 404 PvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~E 445 (607)
|+|-+.-+. | -.|+..++..|+|++.+...
T Consensus 290 piig~GGI~---------~---~~da~e~l~aGA~~Vqv~ta 319 (335)
T TIGR01036 290 PIIGVGGIS---------S---AQDALEKIRAGASLLQIYSG 319 (335)
T ss_pred CEEEECCCC---------C---HHHHHHHHHcCCcHHHhhHH
Confidence 777543322 1 34788999999999988633
No 416
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=36.65 E-value=96 Score=32.72 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=41.3
Q ss_pred HHHHhhHhcCCcEEEeccCC------ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~------sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGD 377 (607)
++.+.+.+.|+|+|.++--. ....+..+.+..+....+++||+- -|+.+-.++++. +|++++||.-
T Consensus 184 ~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~----GGI~~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD----GGIRRGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe----CCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 45677789999999885311 112333344433333346778772 466666666655 8999999854
Q ss_pred c
Q 007349 378 L 378 (607)
Q Consensus 378 L 378 (607)
|
T Consensus 260 l 260 (299)
T cd02809 260 L 260 (299)
T ss_pred H
Confidence 4
No 417
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=36.61 E-value=4.2e+02 Score=29.38 Aligned_cols=139 Identities=18% Similarity=0.184 Sum_probs=72.3
Q ss_pred CCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEec---cCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHH
Q 007349 286 SRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVS---FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLH 362 (607)
Q Consensus 286 s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~S---fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~Nld 362 (607)
...|=.+|+..+ | .+++.+ +.+..|.|.+..+ -+.+.+|+.++-+.|++.+...+|-.|+=.-..++.+.
T Consensus 148 pG~GG~Lp~~KV-----~-~~ia~~-R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~ 220 (368)
T PF01645_consen 148 PGEGGHLPGEKV-----T-EEIARI-RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIA 220 (368)
T ss_dssp TTT--EE-GGG--------HHHHHH-HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHH
T ss_pred ccCcceechhhc-----h-HHHHHH-hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHH
Confidence 444556666553 3 233443 3456789988765 35778888887788888888899999997666665555
Q ss_pred HHHhh--ccEEEEcCCCccc---------CCCCCCHHHHHHHHHHHHHHcC---CCEEEEcccchhhhcCCCCChHhhhh
Q 007349 363 SIISA--SDGAMVARGDLGA---------ELPIEDVPLLQEDIIRRCRSMQ---KPVIVATNMLESMIDHPTPTRAEVSD 428 (607)
Q Consensus 363 eIl~~--sDGImIgRGDLg~---------elg~e~v~~~qk~II~~c~~aG---KPvivaTqmLeSM~~~~~PtrAEv~D 428 (607)
..+.. +|.|.|.=++=|. +.|++ +.....++.+...+.| +..++++ ...-| -.|
T Consensus 221 ~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP-~~~~l~~a~~~L~~~glr~~V~Li~s--------Ggl~t---~~d 288 (368)
T PF01645_consen 221 AGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLP-TEYALARAHQALVKNGLRDRVSLIAS--------GGLRT---GDD 288 (368)
T ss_dssp HHHHHTT-SEEEEE-TT---SSEECCHHHHC----HHHHHHHHHHHHHCTT-CCCSEEEEE--------SS--S---HHH
T ss_pred HhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCc-HHHHHHHHHHHHHHcCCCCceEEEEe--------CCccC---HHH
Confidence 53322 7999998555332 22222 2333444555555544 3334432 22222 458
Q ss_pred HHHHHHhccceEEec
Q 007349 429 IAIAVREGADAVMLS 443 (607)
Q Consensus 429 v~nav~~G~D~vmLs 443 (607)
++.++..|+|++.+.
T Consensus 289 v~kalaLGAD~v~ig 303 (368)
T PF01645_consen 289 VAKALALGADAVYIG 303 (368)
T ss_dssp HHHHHHCT-SEEE-S
T ss_pred HHHHHhcCCCeeEec
Confidence 999999999999875
No 418
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=36.56 E-value=5.8e+02 Score=27.61 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=18.4
Q ss_pred CCCCHHhHHHH--------HhhHhcCCcEEEec
Q 007349 300 PSITDKDWEDI--------KFGVDNQVDFYAVS 324 (607)
Q Consensus 300 p~lt~kD~~dI--------~~al~~gvD~I~~S 324 (607)
..||..|++.| +.|.+.|+|+|-+.
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih 164 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIH 164 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 45888888777 35557899998653
No 419
>PRK01362 putative translaldolase; Provisional
Probab=36.56 E-value=89 Score=31.83 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=39.7
Q ss_pred HHhhHhcCCcEEEeccCCChhHH--------HHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEc
Q 007349 310 IKFGVDNQVDFYAVSFVKDAKVV--------HELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVA 374 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~sa~dv--------~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIg 374 (607)
...|.+.|++||+ |||.+.+|. .++.+++...+.+.+|++ .+++|.+++.+. +|.+=+.
T Consensus 115 a~~Aa~aGa~yis-pyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkila-----AS~r~~~~v~~~~~~G~d~iTi~ 185 (214)
T PRK01362 115 ALLAAKAGATYVS-PFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIA-----ASVRHPMHVLEAALAGADIATIP 185 (214)
T ss_pred HHHHHhcCCcEEE-eecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEE-----eecCCHHHHHHHHHcCCCEEecC
Confidence 3456678999876 799888774 355666666666677776 467777777764 4655443
No 420
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=36.52 E-value=3e+02 Score=29.30 Aligned_cols=119 Identities=13% Similarity=0.232 Sum_probs=72.7
Q ss_pred CCceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE-Eccc--chhhhc-C
Q 007349 344 ADIHVIVKIESADSIPNLHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV-ATNM--LESMID-H 418 (607)
Q Consensus 344 ~~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviv-aTqm--LeSM~~-~ 418 (607)
..+++...+.+..-++.+..-+.. .+.||+... .+|+++=...-+++++.|++.|..|=. -.++ -|.-+. .
T Consensus 73 ~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS----~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~ 148 (284)
T PRK12737 73 YNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGS----HLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVD 148 (284)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccc
Confidence 367888888887765555444444 689999744 457777778889999999999998711 0011 000000 0
Q ss_pred CCC-ChHhhhhHHHHHH-hccceEEecccccCCCCHH---HHHHHHHHHHHHh
Q 007349 419 PTP-TRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL---KAVKVMHTVALRT 466 (607)
Q Consensus 419 ~~P-trAEv~Dv~nav~-~G~D~vmLs~ETa~G~yPv---eaV~~m~~I~~~a 466 (607)
... ..-...+...++. -|+|++..+--|+.|.|+- --.+.|.+|....
T Consensus 149 ~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~ 201 (284)
T PRK12737 149 EKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV 201 (284)
T ss_pred cccccCCCHHHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh
Confidence 000 0001123345553 7999999999999999953 2344455554433
No 421
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=36.50 E-value=99 Score=33.72 Aligned_cols=93 Identities=19% Similarity=0.166 Sum_probs=58.2
Q ss_pred HHHHHhhHhcCCcEEEeccC---------CChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEE
Q 007349 307 WEDIKFGVDNQVDFYAVSFV---------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMV 373 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV---------~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImI 373 (607)
.+|++.+.+.|+|+|.+|.. .+.+-+.++++.+...+.++.||+ --||.|=.+|++. +|++.|
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~----~GGIr~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYV----DGGVRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEE----eCCCCCHHHHHHHHHcCCCEEEE
Confidence 46677888999999998852 223334455665545555677776 2477777777765 899999
Q ss_pred cCCCcccCC--CCCC----HHHHHHHHHHHHHHcCC
Q 007349 374 ARGDLGAEL--PIED----VPLLQEDIIRRCRSMQK 403 (607)
Q Consensus 374 gRGDLg~el--g~e~----v~~~qk~II~~c~~aGK 403 (607)
||.=|-.-. |.+. +..+++++-......|.
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~ 335 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGV 335 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 987654322 3332 33444455555555554
No 422
>PLN02979 glycolate oxidase
Probab=36.49 E-value=2.2e+02 Score=31.57 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcC-
Q 007349 328 DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ- 402 (607)
Q Consensus 328 sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aG- 402 (607)
+-+|+..+|+.- +.+||+| +|-+.++...+ +|+|.|+-.-=.. ....+....-+.+...+.+
T Consensus 211 tW~dl~wlr~~~-----~~PvivK-----gV~~~~dA~~a~~~Gvd~I~VsnhGGrq---ld~~p~t~~~L~ei~~~~~~ 277 (366)
T PLN02979 211 SWKDVQWLQTIT-----KLPILVK-----GVLTGEDARIAIQAGAAGIIVSNHGARQ---LDYVPATISALEEVVKATQG 277 (366)
T ss_pred CHHHHHHHHhcc-----CCCEEee-----cCCCHHHHHHHHhcCCCEEEECCCCcCC---CCCchhHHHHHHHHHHHhCC
Q ss_pred -CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 403 -KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 403 -KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.|+++ .---..-.|++.|+..|+|++++.
T Consensus 278 ~~~Vi~------------dGGIr~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 278 RIPVFL------------DGGVRRGTDVFKALALGASGIFIG 307 (366)
T ss_pred CCeEEE------------eCCcCcHHHHHHHHHcCCCEEEEc
No 423
>PRK05638 threonine synthase; Validated
Probab=36.41 E-value=2.7e+02 Score=31.14 Aligned_cols=116 Identities=13% Similarity=0.065 Sum_probs=71.0
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+++|.|+.+- .|..+....+...-..|++.+... |. .-++++...+++.+ +..+..
T Consensus 126 alA~~aa~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~-~~~~~~~a~~~~~~-~~~~~~ 187 (442)
T PRK05638 126 SVAAYSARAGKEAFVV-----------VPRKVDKGKLIQMIAFGAKIIRYG-----ES-VDEAIEYAEELARL-NGLYNV 187 (442)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCCHHHHHHHHhcCcEEEEEC-----CC-HHHHHHHHHHHHHh-CCeEec
Confidence 3556789999999773 333334445667778899998874 33 45777777776533 111111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC-CEEEEcCChHHHHHHHhcC----C-----C-CeEEEEeC
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT-PIIVFTRTGSMAVILSHYR----P-----S-STIFAFTN 533 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a-~Iiv~T~sG~tA~~is~~R----P-----~-~PIIAvT~ 533 (607)
...+. ....+...--+.+++++++. .||+.+-+|.++.-+.++- | + ..|+++-+
T Consensus 188 ~~~~n-------p~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~ 252 (442)
T PRK05638 188 TPEYN-------IIGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQT 252 (442)
T ss_pred CCCCC-------hhHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEec
Confidence 11111 01122233345578888877 8999999999986666543 3 1 26888877
No 424
>KOG1816 consensus Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=36.21 E-value=1.3e+02 Score=32.22 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=36.1
Q ss_pred cccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccccccccCceEEEEEEEEeCCeEEEEEEeCcEecCCCc
Q 007349 210 NDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLLSIQGGMMSLAVKSKTKDLVKCIVVDGGELKSRRH 289 (607)
Q Consensus 210 ~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kg 289 (607)
..+..||.|.+.|. +-.-+|+|.+..+...+|.++.+-.+----+
T Consensus 144 acLT~gDvi~i~Yn-----------------------------------~k~y~i~V~e~kPa~aVsIiEtD~~VDF~pP 188 (308)
T KOG1816|consen 144 ACLTTGDVILINYN-----------------------------------EKTYELKVVETKPANAVSIIETDLNVDFDPP 188 (308)
T ss_pred cccccCCEEEEecC-----------------------------------CeEEEEEEEEecCCceeEEEEcceeecccCC
Confidence 35788999999965 5667999999999999999998876654333
Q ss_pred c
Q 007349 290 L 290 (607)
Q Consensus 290 v 290 (607)
+
T Consensus 189 ~ 189 (308)
T KOG1816|consen 189 L 189 (308)
T ss_pred c
Confidence 3
No 425
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=36.14 E-value=1.7e+02 Score=25.80 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 007349 331 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 331 dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviv 407 (607)
-+..+++++++.|-+..+.+ -++.++++.+...|.|+++| .+...++++-+.+...|+||.+
T Consensus 19 l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~p----------qi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLAP----------QVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEECc----------hHHHHHHHHHHHhhhcCCCEEE
Confidence 34678888888776654443 35666766666789999874 6888899999999999999976
No 426
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=36.04 E-value=4.6e+02 Score=26.56 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhh---------HhcHHHHHhh-ccEEEEcCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS---------IPNLHSIISA-SDGAMVARGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a---------v~NldeIl~~-sDGImIgRGD 377 (607)
+..+.+..-|+-.|-.. +++||.++|+.. +++||--|-..-. ++..++++++ +|.|-+.
T Consensus 3 ~mA~Aa~~gGA~giR~~---~~~dI~aik~~v-----~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlD--- 71 (192)
T PF04131_consen 3 RMAKAAEEGGAVGIRAN---GVEDIRAIKKAV-----DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALD--- 71 (192)
T ss_dssp HHHHHHHHCT-SEEEEE---SHHHHHHHHTTB------S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE---
T ss_pred HHHHHHHHCCceEEEcC---CHHHHHHHHHhc-----CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEe---
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEE--ecccccCCCCHHHH
Q 007349 378 LGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVM--LSGETAHGKFPLKA 455 (607)
Q Consensus 378 Lg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vm--Ls~ETa~G~yPvea 455 (607)
....++- .-.++++...++.+ -.++| .-+-+.|+-++...|+|.|- |+|=|...+..---
T Consensus 72 ---aT~R~Rp-~~l~~li~~i~~~~-~l~MA-------------Dist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD 133 (192)
T PF04131_consen 72 ---ATDRPRP-ETLEELIREIKEKY-QLVMA-------------DISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPD 133 (192)
T ss_dssp ----SSSS-S-S-HHHHHHHHHHCT-SEEEE-------------E-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHH
T ss_pred ---cCCCCCC-cCHHHHHHHHHHhC-cEEee-------------ecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCC
Q ss_pred HHHHHHHHHH
Q 007349 456 VKVMHTVALR 465 (607)
Q Consensus 456 V~~m~~I~~~ 465 (607)
.+.+++++..
T Consensus 134 ~~lv~~l~~~ 143 (192)
T PF04131_consen 134 FELVRELVQA 143 (192)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
No 427
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=35.82 E-value=1.7e+02 Score=29.45 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 332 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 332 v~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
+..+++.+.+.++++.+-+--+.. .-+|++++++-.|.|+.+-.+ +.....+-+.|+++++|++.+
T Consensus 77 a~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 77 AEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDN----------FATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 345677788888877665543333 346788888889988886322 245667889999999999874
No 428
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=35.59 E-value=1.3e+02 Score=33.01 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=54.5
Q ss_pred HHHHhhHhcCCcEEEeccC------CChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFV------KDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV------~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGD 377 (607)
+|.+.+.+.|+|+|.+|.- ..+..+..+.+.....+.++.||+- -||.+-.+|++. +|++++||.=
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr~~ 308 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGRPV 308 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 5667888999999999631 1222344455544444556787773 466666666665 8999999964
Q ss_pred ccc--CCCCCC----HHHHHHHHHHHHHHcCCC
Q 007349 378 LGA--ELPIED----VPLLQEDIIRRCRSMQKP 404 (607)
Q Consensus 378 Lg~--elg~e~----v~~~qk~II~~c~~aGKP 404 (607)
|-. .-|-+. +..+++++-..-...|..
T Consensus 309 l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 309 LYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 421 112222 334445555555555543
No 429
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=35.47 E-value=4.1e+02 Score=30.16 Aligned_cols=128 Identities=14% Similarity=0.068 Sum_probs=69.0
Q ss_pred hhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCCcccCCCC---
Q 007349 312 FGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGDLGAELPI--- 384 (607)
Q Consensus 312 ~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGDLg~elg~--- 384 (607)
.|.+.|+|+|-++. ..-...++|+.+ +.+..|=+ +..+++|+..+ +|.|.+|+-.=+..=+.
T Consensus 362 lA~~~~adGvHl~~--~d~~~~~~r~~~---~~~~~iG~------S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~ 430 (502)
T PLN02898 362 VALACDADGVHLGQ--SDMPVRLARSLL---GPGKIIGV------SCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKT 430 (502)
T ss_pred HHHhcCCCEEEeCh--HhcCHHHHHHhc---CCCCEEEE------eCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCC
Confidence 44455777776652 111223444433 33333323 23566666554 79999887422111010
Q ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccc---eEEecccccCCCCHHHHHHHHHH
Q 007349 385 EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD---AVMLSGETAHGKFPLKAVKVMHT 461 (607)
Q Consensus 385 e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D---~vmLs~ETa~G~yPveaV~~m~~ 461 (607)
-.+ ...+++ +.....|++.. ... +.. ++..+...|+| ++.+.+.-..=..|.++++.+.+
T Consensus 431 ~g~-~~~~~~---~~~~~~Pv~ai---------GGI-~~~---~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~ 493 (502)
T PLN02898 431 IGL-DGLREV---CEASKLPVVAI---------GGI-SAS---NAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHA 493 (502)
T ss_pred CCH-HHHHHH---HHcCCCCEEEE---------CCC-CHH---HHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHH
Confidence 011 112222 44568898762 222 222 33456666777 99988776555779999999888
Q ss_pred HHHHhh
Q 007349 462 VALRTE 467 (607)
Q Consensus 462 I~~~aE 467 (607)
+..+..
T Consensus 494 ~~~~~~ 499 (502)
T PLN02898 494 ILTEAL 499 (502)
T ss_pred HHHHHh
Confidence 876644
No 430
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=35.40 E-value=1.6e+02 Score=30.19 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 333 HELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 333 ~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
..+++.+.+.++++.|.+.-+..+ -+|++++++..|.|+.+-. -+..+..+-+.|+++++|++.+
T Consensus 89 ~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D----------~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 89 ESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTD----------NVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCC----------CHHHHHHHHHHHHHhCCEEEEe
Confidence 445667777788877666444332 3577888888998887621 2345677889999999998874
No 431
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.28 E-value=78 Score=33.85 Aligned_cols=63 Identities=6% Similarity=0.090 Sum_probs=46.4
Q ss_pred HhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhh--HhcHHHHHhh-ccEEEEcC
Q 007349 305 KDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADS--IPNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a--v~NldeIl~~-sDGImIgR 375 (607)
.+.+++..+++.|+|.|.+=.. +++++.++.+.+.. + ++||-.-| .+|+.++++. +|.|.+|.
T Consensus 205 ~tleea~~a~~agaDiImLDnm-spe~l~~av~~~~~---~----~~leaSGGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 205 ESLAAAEEAAAAGADIIMLDNM-SLEQIEQAITLIAG---R----SRIECSGNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC---c----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 3457778889999999999765 78888887776642 3 24554444 4588888877 89999984
No 432
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=35.12 E-value=1.2e+02 Score=31.17 Aligned_cols=62 Identities=19% Similarity=0.084 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCChHHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEe
Q 007349 488 GDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYM 552 (607)
Q Consensus 488 ~~~ia~~a~~~A~~l~a~Iiv~T~sG~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~ 552 (607)
...||..|..+ ++-.=.+|=.+|.|+..++++-|..++-.+|++-.+++.|.-..++.-++.
T Consensus 80 K~~IA~~Aa~~---I~~g~~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~~~~v~l~ 141 (251)
T PRK13509 80 KVRIAKAASQL---CNPGESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIM 141 (251)
T ss_pred HHHHHHHHHHh---CCCCCEEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCCCCEEEEE
Confidence 45666655544 333336677799999999999887789999999999988876666654544
No 433
>PRK12346 transaldolase A; Provisional
Probab=35.11 E-value=92 Score=33.68 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=15.6
Q ss_pred HhhHhcCCcEEEeccCCChhHH
Q 007349 311 KFGVDNQVDFYAVSFVKDAKVV 332 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa~dv 332 (607)
..+.+.|+++|. |||.+-.|+
T Consensus 164 ~~aa~AGa~~IS-PfVgRi~d~ 184 (316)
T PRK12346 164 RACAEAGVFLIS-PFVGRIYDW 184 (316)
T ss_pred HHHHHcCCCEEE-ecccHHHHh
Confidence 345678999875 799887774
No 434
>PTZ00411 transaldolase-like protein; Provisional
Probab=34.98 E-value=93 Score=33.90 Aligned_cols=21 Identities=14% Similarity=0.010 Sum_probs=15.8
Q ss_pred HhhHhcCCcEEEeccCCChhHH
Q 007349 311 KFGVDNQVDFYAVSFVKDAKVV 332 (607)
Q Consensus 311 ~~al~~gvD~I~~SfV~sa~dv 332 (607)
..+.+.|+++|. |||.+-.|+
T Consensus 175 ~aaaeAGa~~IS-PfVGRi~d~ 195 (333)
T PTZ00411 175 VACAQAGVTLIS-PFVGRILDW 195 (333)
T ss_pred HHHHHcCCCEEE-eecchHHHh
Confidence 345678999875 799888775
No 435
>PLN02535 glycolate oxidase
Probab=34.90 E-value=73 Score=35.09 Aligned_cols=68 Identities=16% Similarity=0.188 Sum_probs=44.1
Q ss_pred HHHHhhHhcCCcEEEeccCC------ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~------sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGD 377 (607)
+|...+.+.|+|+|.+|... ...-+..+.+..+..+.++.||+ --||.+-.+|++. +|++++||.=
T Consensus 235 ~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~----dGGIr~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 235 EDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLL----DGGVRRGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEe----eCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 45678889999999887321 11113334444333345677776 2477777777776 8999999876
Q ss_pred cc
Q 007349 378 LG 379 (607)
Q Consensus 378 Lg 379 (607)
|-
T Consensus 311 l~ 312 (364)
T PLN02535 311 IY 312 (364)
T ss_pred Hh
Confidence 53
No 436
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=34.79 E-value=1.8e+02 Score=37.78 Aligned_cols=138 Identities=15% Similarity=0.075 Sum_probs=85.1
Q ss_pred CCCccccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEec---cCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHH
Q 007349 286 SRRHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAVS---FVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLH 362 (607)
Q Consensus 286 s~Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~S---fV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~Nld 362 (607)
+..|=.+||..+. .+++.+ +.+..|+|.|..| -+.|.+|+.++-.-|++.+...+|-.|+=...++..+.
T Consensus 941 PG~GG~Lpg~KV~------~~IA~~-R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia 1013 (1485)
T PRK11750 941 PGEGGQLPGDKVN------PLIARL-RYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIA 1013 (1485)
T ss_pred CCCCCcCccccCC------HHHHHH-cCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHH
Confidence 4445567776643 233333 3455688877665 34577777777667778888889999998777787776
Q ss_pred H-HHhh-ccEEEEcCCCcccC---------CCCC---CHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhh
Q 007349 363 S-IISA-SDGAMVARGDLGAE---------LPIE---DVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSD 428 (607)
Q Consensus 363 e-Il~~-sDGImIgRGDLg~e---------lg~e---~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~D 428 (607)
. ++++ +|.|.|.=+|=|.- .|++ .+..+++.+...-.+....+++..++. | -.|
T Consensus 1014 ~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~---------t---~~D 1081 (1485)
T PRK11750 1014 TGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLK---------T---GLD 1081 (1485)
T ss_pred hChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcC---------C---HHH
Confidence 4 3333 89999986554322 1211 244444544443333334455543322 2 268
Q ss_pred HHHHHHhccceEEe
Q 007349 429 IAIAVREGADAVML 442 (607)
Q Consensus 429 v~nav~~G~D~vmL 442 (607)
++-|+..|+|.+-+
T Consensus 1082 v~kA~aLGAd~~~~ 1095 (1485)
T PRK11750 1082 VIKAAILGAESFGF 1095 (1485)
T ss_pred HHHHHHcCCccccc
Confidence 99999999998654
No 437
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.79 E-value=78 Score=33.67 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=44.6
Q ss_pred hHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhH--hcHHHHHhh-ccEEEEcC
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSI--PNLHSIISA-SDGAMVAR 375 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av--~NldeIl~~-sDGImIgR 375 (607)
..+++..+++.|+|.|.+=.. +++++.+..+++. .+.. ||-.-|+ +|+.++++. +|.|.+|.
T Consensus 203 tleea~ea~~~gaDiI~LDn~-s~e~l~~av~~~~---~~~~----leaSGGI~~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 203 TLDQLEEALELGVDAVLLDNM-TPDTLREAVAIVA---GRAI----TEASGRITPETAPAIAASGVDLISVGW 267 (281)
T ss_pred CHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHhC---CCce----EEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 456677888999999999664 7788877766663 2222 5554444 588888887 89999984
No 438
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=34.60 E-value=1.9e+02 Score=28.01 Aligned_cols=66 Identities=21% Similarity=0.221 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 007349 332 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 408 (607)
Q Consensus 332 v~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~a-GKPviva 408 (607)
...+++.+.+.+..+.+.+--+.... +|++++++-.|.|+.+-.+ +.....+...|.+. ++|++.+
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEE
Confidence 45567778888888776664444433 6788888888887775222 34556677777776 9999985
No 439
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=34.57 E-value=66 Score=36.06 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=42.0
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHH
Q 007349 105 CTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEY 150 (607)
Q Consensus 105 ~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~ 150 (607)
+.||-.-++.+.+.-|.++|+|+.=|.-|.|+-....++|+.||+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5577777899999999999999999999999999999999999974
No 440
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=34.44 E-value=1.9e+02 Score=29.10 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc-CCCEEEE
Q 007349 334 ELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-QKPVIVA 408 (607)
Q Consensus 334 ~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~a-GKPviva 408 (607)
.+++.+.+.+..+.+-+.-|.... +|++++++-.|.|+-+- +. +.....+...|.+. ++|++.+
T Consensus 85 ~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~---------D~-~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 85 ALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAF---------DN-AETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred HHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECC---------CC-HHHHHHHHHHHHHhCCCCEEEe
Confidence 456667777777777665555444 57788888788877651 22 23455788899998 9999986
No 441
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.25 E-value=5.6e+02 Score=26.74 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=61.9
Q ss_pred CccccCCCccCCCCCCHHhHHHHHhhHhcCCcEE--Eecc---------CCChhHHH--------HHHHH---HHhcCCC
Q 007349 288 RHLNVRGKSANLPSITDKDWEDIKFGVDNQVDFY--AVSF---------VKDAKVVH--------ELKDY---LKSCNAD 345 (607)
Q Consensus 288 Kgvn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I--~~Sf---------V~sa~dv~--------~vr~~---l~~~~~~ 345 (607)
|..-+|=.....|.+. .-.+.+....+.|+|+| ++|| ++.+..-- .+=+. +++...+
T Consensus 11 ~~~li~yi~aG~P~~~-~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~ 89 (258)
T PRK13111 11 RKALIPYITAGDPDLE-TSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPT 89 (258)
T ss_pred CccEEEEEeCCCCCHH-HHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 3344444445556642 23455666678899985 6788 43332211 01111 2223345
Q ss_pred ceEEEee--cC--hhhHhcHHHHHhh--ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEE
Q 007349 346 IHVIVKI--ES--ADSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIV 407 (607)
Q Consensus 346 i~IIAKI--Et--~~av~NldeIl~~--sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviv 407 (607)
++++.+- .. .-|++++-+-++. +||++|. || |+ .-.+....+|+++|...+.
T Consensus 90 ~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviip--DL----p~----ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 90 IPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIP--DL----PP----EEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEEC--CC----CH----HHHHHHHHHHHHcCCcEEE
Confidence 5655544 21 3477777666655 7999994 44 43 2356788899999977654
No 442
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=34.12 E-value=1.1e+02 Score=32.27 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=39.2
Q ss_pred EEecCCCCCCHHHHHHHHHhCCcEEEEecC-----------CCChHHHHHHHHHHHHHHhhcCCceEEEEeecCCC
Q 007349 104 VCTIGPSTSSREMIWKLAEEGMNVARLNMS-----------HGDHASHQKTIDLVKEYNSQFEDKAVAIMLDTKGP 168 (607)
Q Consensus 104 i~TiGPss~~~e~l~~li~aGm~v~RiN~s-----------Hg~~~~~~~~i~~iR~~~~~~~~~~i~I~~Dl~Gp 168 (607)
+.|+ |=.-++|..++|.+||+|+.=.++- .-+.++..+.++.+.++..+.+ ..+=+|+- -||
T Consensus 151 l~T~-~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~-~dii~l~h-GGP 223 (268)
T PF09370_consen 151 LFTT-AYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVN-PDIIVLCH-GGP 223 (268)
T ss_dssp -EE---EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC--TT-EEEEE-CTT
T ss_pred Ceee-eeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhC-CCeEEEEe-CCC
Confidence 5666 6567899999999999999999982 2345777888888888887776 45544443 444
No 443
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=34.09 E-value=2.2e+02 Score=29.95 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhHHHHHHhccceEEecccccCCCCH------HHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHH
Q 007349 426 VSDIAIAVREGADAVMLSGETAHGKFP------LKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMA 499 (607)
Q Consensus 426 v~Dv~nav~~G~D~vmLs~ETa~G~yP------veaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A 499 (607)
+.|....-.-|+|++|+. ..|..| -+++..|..|..+.-......---.-|. ++...+++.+.+.=|
T Consensus 37 ~~dA~~leegG~DavivE---N~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLr----Nd~vaA~~IA~a~gA 109 (263)
T COG0434 37 VRDAAALEEGGVDAVIVE---NYGDAPFLKDVGPETVAAMAVIVREVVREVSIPVGVNVLR----NDAVAALAIAYAVGA 109 (263)
T ss_pred HHHHHHHHhCCCcEEEEe---ccCCCCCCCCCChHHHHHHHHHHHHHHHhccccceeeeec----cccHHHHHHHHhcCC
Q ss_pred h--hcCC-CEEEEcCCh---HHHHHHHhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccCCCHHHHHHHHHHHHHHcC
Q 007349 500 N--TLNT-PIIVFTRTG---SMAVILSHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSDDVEETFSRAIKLLMDKN 573 (607)
Q Consensus 500 ~--~l~a-~Iiv~T~sG---~tA~~is~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~d~d~~i~~Al~~ake~G 573 (607)
. +.|. .=+.+|..| --|..+.|||++.+ .+..++--|.+=+-.+..+. .+..+++-..++|
T Consensus 110 ~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-----------~~v~vlADv~VKHa~~l~~~--~~~~~v~dtver~ 176 (263)
T COG0434 110 DFIRVNVLTGAYATDQGIIEGNAAELARYRARLG-----------SRVKVLADVHVKHAVHLGNR--SLEEAVKDTVERG 176 (263)
T ss_pred CEEEEEeeeceEecccceecchHHHHHHHHHhcc-----------CCcEEEeecchhcccccCCc--CHHHHHHHHHHcc
Q ss_pred CCCCCCEEEEEecCCCCCCCCCC
Q 007349 574 LVTKGEFVTLVQSGAQPIWRQES 596 (607)
Q Consensus 574 ll~~GD~VVvvsg~~~p~~~~G~ 596 (607)
.. |-|+ ++| |+.|+
T Consensus 177 ~a---DaVI-~tG-----~~TG~ 190 (263)
T COG0434 177 LA---DAVI-VTG-----SRTGS 190 (263)
T ss_pred CC---CEEE-Eec-----ccCCC
No 444
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=34.06 E-value=1e+02 Score=31.81 Aligned_cols=74 Identities=14% Similarity=0.295 Sum_probs=48.0
Q ss_pred CCCceEEEec-----CCCCCC-HHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCce-EEEEeecCCCee
Q 007349 98 RRKTKIVCTI-----GPSTSS-REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKA-VAIMLDTKGPEV 170 (607)
Q Consensus 98 ~r~TKIi~Ti-----GPss~~-~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~-i~I~~Dl~Gpki 170 (607)
...||||++- .|+.++ .+.+++|.+.|.|+.+|-..=-+.++..++++..+++..+..+.| |++.|=-.|.--
T Consensus 133 ~~~~kvI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~S 212 (253)
T PRK02412 133 EHGVKVVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRIS 212 (253)
T ss_pred HcCCEEEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHH
Confidence 3468999987 333222 356888999999999999776666777778877777654422245 455544444333
Q ss_pred E
Q 007349 171 R 171 (607)
Q Consensus 171 R 171 (607)
|
T Consensus 213 R 213 (253)
T PRK02412 213 R 213 (253)
T ss_pred H
Confidence 3
No 445
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=33.96 E-value=1.2e+02 Score=26.16 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=30.4
Q ss_pred Eecccc-ccccccCCCCEEEEeCCccceeeeccccccccccccccccCCCcccccccccCceEEEEEEEEeCCeEEEEEE
Q 007349 201 VSVNYD-DFVNDVEVGDILLVDDHTMFLIVLHHKHKFSSKFNLLFCSRDLTSCFLLSIQGGMMSLAVKSKTKDLVKCIVV 279 (607)
Q Consensus 201 i~v~~~-~~~~~v~~Gd~I~id~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~DG~i~l~V~~~~~~~i~c~V~ 279 (607)
+.+..+ ..+..+.+||.|-+| + +.|.|.++.++.+...+.
T Consensus 22 ~~i~~~~~~~~~~~~g~SIavn-------------------------------------G--vcLTV~~~~~~~f~~~l~ 62 (85)
T PF00677_consen 22 LRIEIPDKILSDLKIGGSIAVN-------------------------------------G--VCLTVTDINEDWFEVDLI 62 (85)
T ss_dssp EEEEESTGGGGTG-TTSEEEET-------------------------------------T--EEEEEEEEETTEEEEEEE
T ss_pred EEEEcCHHHHhhCccCcEEEEC-------------------------------------C--eeeEEEEecCCEEEEech
Confidence 334444 678889999999998 3 689999999998887765
No 446
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=33.94 E-value=5.3e+02 Score=31.06 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=17.9
Q ss_pred CCCHHhHHHH--------HhhHhcCCcEEEec
Q 007349 301 SITDKDWEDI--------KFGVDNQVDFYAVS 324 (607)
Q Consensus 301 ~lt~kD~~dI--------~~al~~gvD~I~~S 324 (607)
.+|..|++.+ +.+.+.|+|+|-+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih 571 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELH 571 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 5888888666 35567899999664
No 447
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=33.80 E-value=4.6e+02 Score=29.09 Aligned_cols=119 Identities=12% Similarity=0.098 Sum_probs=70.0
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccce--EEecccccCCCCHHHHHHHHHHHHHHhhcCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADA--VMLSGETAHGKFPLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~--vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~ 470 (607)
-+...|+..|.|+.+- .|..+....+...-..|++. +.+. |...-++++...+++.+-. ..
T Consensus 78 a~A~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~vv~v~~~-----g~~~~~a~~~a~~~~~~~g-~~ 140 (409)
T TIGR02079 78 GFAYACRHLGVHGTVF-----------MPATTPKQKIDRVKIFGGEFIEIILV-----GDTFDQCAAAAREHVEDHG-GT 140 (409)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCCeeEEEEe-----CCCHHHHHHHHHHHHHhcC-CE
Confidence 4566799999999773 22222223345566789984 3443 3334567766666654421 11
Q ss_pred CCCCCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCH
Q 007349 471 PVSITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQE 535 (607)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~ 535 (607)
+.. .|.+ ....+.-..-+.++.++++ . .||+..-+|.+..-++ .++|...|+++-|..
T Consensus 141 ~~~-~~~~------~~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~ 205 (409)
T TIGR02079 141 FIP-PFDD------PRIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205 (409)
T ss_pred EeC-CCCC------HhHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 111 1111 0122223334667888875 4 7888888887765554 457999999999964
No 448
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=33.70 E-value=2.3e+02 Score=28.60 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEe
Q 007349 388 PLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVML 442 (607)
Q Consensus 388 ~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmL 442 (607)
..+...+++.++++|+++++-|- .. ..+...++..|+|+|+-
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv--------n~-----~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV--------ND-----PEDMARLIDLGVDGIIT 258 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC--------CC-----HHHHHHHHHcCCCEEEc
Confidence 34567899999999999998652 11 23456788899999874
No 449
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.66 E-value=73 Score=36.50 Aligned_cols=50 Identities=22% Similarity=0.330 Sum_probs=41.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 99 RKTKIVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 99 r~TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
.|-.+.+.+|+. ...+.++.|+++|+|+.=+.-+||..+...+.|+.+|+
T Consensus 230 grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~ 279 (502)
T PRK07107 230 KRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIRE 279 (502)
T ss_pred cCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHH
Confidence 456677888885 56799999999999999999999988777777777775
No 450
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=33.60 E-value=1.1e+02 Score=31.30 Aligned_cols=60 Identities=17% Similarity=0.249 Sum_probs=36.8
Q ss_pred HHhhHhcCCcEEEeccCCC--hhHHHHHHHHHHhcCCCceEEE--eecChhhHhcHHHHHhh-ccEEEEcCC
Q 007349 310 IKFGVDNQVDFYAVSFVKD--AKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~s--a~dv~~vr~~l~~~~~~i~IIA--KIEt~~av~NldeIl~~-sDGImIgRG 376 (607)
.+...+.|+|+|.++--.. ..|+..+++.- .+++||+ -|.|.+- ..+.+.. +|+||+||+
T Consensus 158 a~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~ed---a~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 158 ARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIES---AKEMFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHHH---HHHHHHcCCCEEEEcCC
Confidence 3455688999887643221 33555555442 3577877 4555433 3444444 999999999
No 451
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.50 E-value=40 Score=35.33 Aligned_cols=52 Identities=23% Similarity=0.245 Sum_probs=37.2
Q ss_pred cCC-CEEEEcCChHHHHHHHh----cCCCCeEEEEeCCHHHHhhhccCCCeE-EEEeccC
Q 007349 502 LNT-PIIVFTRTGSMAVILSH----YRPSSTIFAFTNQERIKQRLVLYQGVM-PIYMQFS 555 (607)
Q Consensus 502 l~a-~Iiv~T~sG~tA~~is~----~RP~~PIIAvT~d~~taRrL~L~wGV~-Pi~~~~~ 555 (607)
..+ .+||-|.||+||-.+|- ..|.++.+.+||=..+. .+.+++.. |+.++..
T Consensus 146 ~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~l~--~r~~~~~~~plVl~~~ 203 (265)
T PRK04885 146 FRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIASIN--NRVFRTLGSPLILPKH 203 (265)
T ss_pred EEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeecccc--ccccccCCCCEEECCC
Confidence 355 79999999999999998 77899999999855211 11334333 7766543
No 452
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=33.48 E-value=1.8e+02 Score=29.43 Aligned_cols=61 Identities=13% Similarity=0.106 Sum_probs=34.5
Q ss_pred CceEEEEEEEEeCCeEEEEEEeCcEecCCCc--cccCCCccCCCCCCHHhHHHHHhhHhcCCcEEEe
Q 007349 259 GGMMSLAVKSKTKDLVKCIVVDGGELKSRRH--LNVRGKSANLPSITDKDWEDIKFGVDNQVDFYAV 323 (607)
Q Consensus 259 DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kg--vn~p~~~~~lp~lt~kD~~dI~~al~~gvD~I~~ 323 (607)
++.-..++.+++++.+.+++...-....... +.+ -..+|.- ++-..-|+.+.+.|++-|..
T Consensus 30 g~~~~a~i~~i~~~~~~~~i~~~~~~~~~~~~~i~L---~~al~K~-~~~d~il~katELGv~~i~p 92 (225)
T PF04452_consen 30 GGEYRAEITEISKKSATLRILEELEIPPEPPPEITL---AQALPKG-DRMDWILQKATELGVSRIIP 92 (225)
T ss_dssp SEEEEEEEEEEESSEEEEEEEEEEE---SSSSEEEE---EEE--ST-THHHHHHHHHHHTT-SEEEE
T ss_pred CCEEEEEEEECcCcEEEEEEeeeccCCCCCcceEEE---EEEEEcC-ccHHHHHHHHHhcCCCEEEE
Confidence 5566778888999999888774433332222 222 1123332 34446668899999998754
No 453
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=33.47 E-value=5.4e+02 Score=27.09 Aligned_cols=116 Identities=12% Similarity=0.077 Sum_probs=66.8
Q ss_pred HHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007349 394 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 473 (607)
Q Consensus 394 II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 473 (607)
+...|+..|.|+.+- .|.-+ ........-..|++.+...+ ..-++.....+++.+- .++..
T Consensus 85 lA~~a~~~G~~~~iv---------vp~~~--~~~k~~~l~~~GA~Vi~~~~------~~~~~~~~a~~~~~~~--~~~~~ 145 (324)
T cd01563 85 LAAYAARAGIKCVVF---------LPAGK--ALGKLAQALAYGATVLAVEG------NFDDALRLVRELAEEN--WIYLS 145 (324)
T ss_pred HHHHHHHcCCceEEE---------EeCCC--CHHHHHHHHHcCCEEEEECC------cHHHHHHHHHHHHHhc--Ceecc
Confidence 446799999998762 22111 22233344557998877532 3456666666665442 22111
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhhcC---C-CEEEEcCChHHHHHHHhc----C------CCCeEEEEeCCH
Q 007349 474 ITPPTQFSAHKSHMGDMFAFHSTTMANTLN---T-PIIVFTRTGSMAVILSHY----R------PSSTIFAFTNQE 535 (607)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~---a-~Iiv~T~sG~tA~~is~~----R------P~~PIIAvT~d~ 535 (607)
+ +.+. ...+....-+.++.++++ . .||+.+-+|.++--++++ + |...|+++-+..
T Consensus 146 ~-~~n~------~~~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~ 214 (324)
T cd01563 146 N-SLNP------YRLEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEG 214 (324)
T ss_pred C-CCCc------ceecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCC
Confidence 1 1110 011122233557777664 3 788999999998888764 3 578899998753
No 454
>PLN00011 cysteine synthase
Probab=33.35 E-value=6.2e+02 Score=26.96 Aligned_cols=122 Identities=10% Similarity=0.016 Sum_probs=66.9
Q ss_pred HHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCC
Q 007349 394 IIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVS 473 (607)
Q Consensus 394 II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~ 473 (607)
+...|+..|.|+.+. .|. ...-..+...-..|++.++...+ .+ .-+.++...++..+...++...
T Consensus 84 lA~~a~~~G~~~~iv---------vp~--~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~~~~~~~~~ 148 (323)
T PLN00011 84 LACIGAARGYKVILV---------MPS--TMSLERRIILRALGAEVHLTDQS--IG--LKGMLEKAEEILSKTPGGYIPQ 148 (323)
T ss_pred HHHHHHHcCCeEEEE---------eCC--CCCHHHHHHHHHcCCEEEEECCC--cC--hHHHHHHHHHHHHhCCCeEEec
Confidence 455799999999773 222 22223444666789999876432 11 2233444444443211111111
Q ss_pred CCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHH----HhcCCCCeEEEEeCCHH
Q 007349 474 ITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVIL----SHYRPSSTIFAFTNQER 536 (607)
Q Consensus 474 ~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~i----s~~RP~~PIIAvT~d~~ 536 (607)
+ |.+ .. +..--....+.++.++++ . .||+.+-+|.|.--+ -.++|...|+++-+...
T Consensus 149 ~-~~n----~~-n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~ 212 (323)
T PLN00011 149 Q-FEN----PA-NPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVES 212 (323)
T ss_pred c-ccC----Cc-cHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCC
Confidence 1 110 00 111112334567777754 4 789999999776544 45679999999999653
No 455
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=33.28 E-value=1.4e+02 Score=30.50 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=47.8
Q ss_pred ccEEEEcCCCcccCC-CC----CCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcC--CCCChHhhhhHHHHHHhccceE
Q 007349 368 SDGAMVARGDLGAEL-PI----EDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDH--PTPTRAEVSDIAIAVREGADAV 440 (607)
Q Consensus 368 sDGImIgRGDLg~el-g~----e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~--~~PtrAEv~Dv~nav~~G~D~v 440 (607)
.+.|+|..-.|-..- +. +++..+-+++-..|++.++||++++|+=...... ..|+.+++.+ ...+...+|.+
T Consensus 131 ~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~-sg~Ie~~AD~v 209 (259)
T PF03796_consen 131 VDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRE-SGAIEQDADVV 209 (259)
T ss_dssp EEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCS-TSSHHHH-SEE
T ss_pred CCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhh-hHHHHHHHhhh
Confidence 367777754442221 21 3466666778888999999999999987765443 3566655432 36678889999
Q ss_pred Eec
Q 007349 441 MLS 443 (607)
Q Consensus 441 mLs 443 (607)
|+-
T Consensus 210 l~l 212 (259)
T PF03796_consen 210 LFL 212 (259)
T ss_dssp EEE
T ss_pred hhh
Confidence 873
No 456
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=33.20 E-value=1.8e+02 Score=29.03 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=50.1
Q ss_pred CCCceEEEecC--CCCCC----HHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceE-EEEeecCCCee
Q 007349 98 RRKTKIVCTIG--PSTSS----REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAV-AIMLDTKGPEV 170 (607)
Q Consensus 98 ~r~TKIi~TiG--Pss~~----~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i-~I~~Dl~Gpki 170 (607)
..++|||.+-= ..+.+ .+.+++|.+.|.|+++|-..-.+.++..++++..+++.+..+ .|+ ++.|=-.|.--
T Consensus 111 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~-~p~i~~~MG~~G~~S 189 (224)
T PF01487_consen 111 KGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPD-IPVIAISMGELGRIS 189 (224)
T ss_dssp HTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTS-SEEEEEEETGGGHHH
T ss_pred hCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccC-CcEEEEEcCCCchhH
Confidence 45799999873 22333 366888999999999999998888888889888888877644 554 55554444433
Q ss_pred E
Q 007349 171 R 171 (607)
Q Consensus 171 R 171 (607)
|
T Consensus 190 R 190 (224)
T PF01487_consen 190 R 190 (224)
T ss_dssp H
T ss_pred H
Confidence 4
No 457
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=33.11 E-value=1.1e+02 Score=27.56 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=39.0
Q ss_pred CEEEEcCChHHHHHH-----HhcCCCCeEEEEeCCHHHHhhhccCCCeEEEEeccCC----CHHHHHHHHHH
Q 007349 505 PIIVFTRTGSMAVIL-----SHYRPSSTIFAFTNQERIKQRLVLYQGVMPIYMQFSD----DVEETFSRAIK 567 (607)
Q Consensus 505 ~Iiv~T~sG~tA~~i-----s~~RP~~PIIAvT~d~~taRrL~L~wGV~Pi~~~~~~----d~d~~i~~Al~ 567 (607)
.+|++|.||.|...+ ++.| .+||+++|.+.. ..+++-.||..-+.++... +...++...+.
T Consensus 46 l~I~iS~SG~t~e~i~~~~~a~~~-g~~iI~IT~~~~-l~~~~~~~~~~~~~~p~~~~~r~s~~~~~~~~~~ 115 (119)
T cd05017 46 LVIAVSYSGNTEETLSAVEQAKER-GAKIVAITSGGK-LLEMAREHGVPVIIIPKGLQPRAAFPYLFTALLN 115 (119)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEeCCch-HHHHHHHcCCcEEECCCCCCCceeHHHHHHHHHH
Confidence 577899999876544 3444 689999998776 4446666776666654322 34445544443
No 458
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=33.07 E-value=4.7e+02 Score=30.02 Aligned_cols=119 Identities=8% Similarity=0.037 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|++.|.|+.+- .|..+... .+...-..|++.++. |..+-++.+...+++.+-. . .+
T Consensus 79 ~vA~aa~~~Gi~~~Iv---------mP~~tp~~--Kv~~~r~~GA~Vvl~------g~~~d~a~~~a~~la~~~g-~-~~ 139 (499)
T TIGR01124 79 GVAFSAARLGLKALIV---------MPETTPDI--KVDAVRGFGGEVVLH------GANFDDAKAKAIELSQEKG-L-TF 139 (499)
T ss_pred HHHHHHHHcCCCEEEE---------ECCCCCHH--HHHHHHhCCCEEEEe------CcCHHHHHHHHHHHHHhcC-C-Ee
Confidence 4667899999998762 23222222 233455679987764 2335677777666654421 1 11
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC--C-CEEEEcCChHHHHHHH----hcCCCCeEEEEeCCHH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN--T-PIIVFTRTGSMAVILS----HYRPSSTIFAFTNQER 536 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~--a-~Iiv~T~sG~tA~~is----~~RP~~PIIAvT~d~~ 536 (607)
-..|.+ ......-..-+.++.++++ . .|++..-+|.++.-++ .++|.+.||++-+...
T Consensus 140 i~p~~~------~~~i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~ 204 (499)
T TIGR01124 140 IHPFDD------PLVIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDS 204 (499)
T ss_pred eCCCCC------hHHHHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 111111 1122222334567778776 4 6888888888776554 4579999999999644
No 459
>PRK02991 D-serine dehydratase; Provisional
Probab=32.93 E-value=5.3e+02 Score=29.14 Aligned_cols=120 Identities=11% Similarity=-0.081 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+..|.++.+. .|..+--..+...-..|++.+... ...-++++...+++.+-...++.
T Consensus 171 alA~aA~~~G~~~tIv-----------vP~~a~~~K~~~ir~~GAeVi~~~------~~~~~a~~~A~~la~~~~~~~~~ 233 (441)
T PRK02991 171 SIGIMSAALGFKVTVH-----------MSADARQWKKDKLRSHGVTVVEYE------GDYGVAVEEGRKAAESDPNCYFI 233 (441)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHhcCCeEeC
Confidence 4566899999998773 333334444556777899887643 34457888877776542111111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcCC-----------CEEEEcCChHHHHHHHhc-----CCCCeEEEEeCCHH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLNT-----------PIIVFTRTGSMAVILSHY-----RPSSTIFAFTNQER 536 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a-----------~Iiv~T~sG~tA~~is~~-----RP~~PIIAvT~d~~ 536 (607)
.. +. .....+.-.--+.++.++++. .|+|..-.|.++--++++ +|.+.||++-|...
T Consensus 234 ~~-~~------~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga 306 (441)
T PRK02991 234 DD-EN------SRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHS 306 (441)
T ss_pred CC-CC------chhHHHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 11 10 001222223334566666541 477888888776655433 68899999998653
No 460
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=32.92 E-value=5.2e+02 Score=25.97 Aligned_cols=134 Identities=17% Similarity=0.122 Sum_probs=70.3
Q ss_pred HHHHHhhHhcCCcEEEeccCCC---------------hhHHHHHHHHHHhcCCCceEEEeecChhh----HhcHHHHHhh
Q 007349 307 WEDIKFGVDNQVDFYAVSFVKD---------------AKVVHELKDYLKSCNADIHVIVKIESADS----IPNLHSIISA 367 (607)
Q Consensus 307 ~~dI~~al~~gvD~I~~SfV~s---------------a~dv~~vr~~l~~~~~~i~IIAKIEt~~a----v~NldeIl~~ 367 (607)
.++++.+.+.|+|.|.+++--+ .+.+.+..+++.+.| ..+..-+|+... .+.+.++++.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G--~~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG--LEVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEEEeecCCCCCHHHHHHHHHH
Confidence 5678888899999999887544 222333334445555 445555554443 2222233322
Q ss_pred -----ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHc-C-CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceE
Q 007349 368 -----SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSM-Q-KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAV 440 (607)
Q Consensus 368 -----sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~a-G-KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~v 440 (607)
+|.|.+..- .|. -.|.-.++++...++. + .|+.+- .+...-.|- .-...|+..|+|.+
T Consensus 155 ~~~~g~~~i~l~Dt-----~G~-~~P~~v~~li~~l~~~~~~~~~~~H--------~Hn~~gla~-an~laA~~aG~~~i 219 (265)
T cd03174 155 LEEAGADEISLKDT-----VGL-ATPEEVAELVKALREALPDVPLGLH--------THNTLGLAV-ANSLAALEAGADRV 219 (265)
T ss_pred HHHcCCCEEEechh-----cCC-cCHHHHHHHHHHHHHhCCCCeEEEE--------eCCCCChHH-HHHHHHHHcCCCEE
Confidence 677877532 232 2344444455554443 3 566664 234444443 33446778888765
Q ss_pred Eec---ccccCCCCHHHHHH
Q 007349 441 MLS---GETAHGKFPLKAVK 457 (607)
Q Consensus 441 mLs---~ETa~G~yPveaV~ 457 (607)
=-| --=..|+=|.|.+-
T Consensus 220 d~s~~G~G~~~Gn~~~e~~~ 239 (265)
T cd03174 220 DGSVNGLGERAGNAATEDLV 239 (265)
T ss_pred EeccccccccccCccHHHHH
Confidence 211 11135666766644
No 461
>PRK13938 phosphoheptose isomerase; Provisional
Probab=32.90 E-value=5.1e+02 Score=25.86 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhhcCC--CEEEEc--CChHHHHHHHh--------cCCCCeEEEEeCCHHHH--------------hhh-
Q 007349 489 DMFAFHSTTMANTLNT--PIIVFT--RTGSMAVILSH--------YRPSSTIFAFTNQERIK--------------QRL- 541 (607)
Q Consensus 489 ~~ia~~a~~~A~~l~a--~Iiv~T--~sG~tA~~is~--------~RP~~PIIAvT~d~~ta--------------RrL- 541 (607)
+.+...+-.+.+.+.. .|+++- .||..|+.++. .||+.|+++++.+.... +++
T Consensus 29 ~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~~ 108 (196)
T PRK13938 29 EAARAIGDRLIAGYRAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARALE 108 (196)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHHH
Confidence 3333333344443333 677755 58888888872 47889999999886543 333
Q ss_pred -ccCCCeEEEEeccCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Q 007349 542 -VLYQGVMPIYMQFSDDVEETFSRAIKLLMDKNLVTKGEFVTLVQS 586 (607)
Q Consensus 542 -~L~wGV~Pi~~~~~~d~d~~i~~Al~~ake~Gll~~GD~VVvvsg 586 (607)
.+..|=.-+.+..+-...+ +-.+++.++++|. .+|.+++
T Consensus 109 ~~~~~~DllI~iS~SG~t~~-vi~a~~~Ak~~G~-----~vI~iT~ 148 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMS-VLRAAKTARELGV-----TVVAMTG 148 (196)
T ss_pred hcCCCCCEEEEEcCCCCCHH-HHHHHHHHHHCCC-----EEEEEeC
Confidence 3444444444444444444 4457778888664 5666655
No 462
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=32.89 E-value=3.6e+02 Score=28.25 Aligned_cols=126 Identities=20% Similarity=0.323 Sum_probs=0.0
Q ss_pred HHhHHHHHhhHhcCCcEEEec-----------cCCChhHHHHHHHHHHhcCCCceEEEee----cChhhHhcHHHHHhh-
Q 007349 304 DKDWEDIKFGVDNQVDFYAVS-----------FVKDAKVVHELKDYLKSCNADIHVIVKI----ESADSIPNLHSIISA- 367 (607)
Q Consensus 304 ~kD~~dI~~al~~gvD~I~~S-----------fV~sa~dv~~vr~~l~~~~~~i~IIAKI----Et~~av~NldeIl~~- 367 (607)
.+|+......++.|+|++=+. +-...+.+.++.+.+.+.- ++++++|+ ....-..-+....+.
T Consensus 111 ~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p~~~~~~~~~~~~~~~~~g 189 (295)
T PF01180_consen 111 IEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREAV-DIPVFVKLSPNFTDIEPFAIAAELAADG 189 (295)
T ss_dssp HHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-SSEEEEEE-STSSCHHHHHHHHHHHTHT
T ss_pred HHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhcc-CCCEEEEecCCCCchHHHHHHHHhhccc
Q ss_pred ccEEE----EcCCC-cccCCCCCCH-------------HHHHHHHHHHHHHcC--CCEEEEcccchhhhcCCCCChHhhh
Q 007349 368 SDGAM----VARGD-LGAELPIEDV-------------PLLQEDIIRRCRSMQ--KPVIVATNMLESMIDHPTPTRAEVS 427 (607)
Q Consensus 368 sDGIm----IgRGD-Lg~elg~e~v-------------~~~qk~II~~c~~aG--KPvivaTqmLeSM~~~~~PtrAEv~ 427 (607)
+|||. +..++ +-.+-..... +.+.+.+-+.++..+ .|+|-.+-+.. -.
T Consensus 190 ~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s------------~~ 257 (295)
T PF01180_consen 190 ADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHS------------GE 257 (295)
T ss_dssp ECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--S------------HH
T ss_pred eeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCC------------HH
Q ss_pred hHHHHHHhccceEEe
Q 007349 428 DIAIAVREGADAVML 442 (607)
Q Consensus 428 Dv~nav~~G~D~vmL 442 (607)
|+..++..|+|+|.+
T Consensus 258 da~e~l~aGA~~Vqv 272 (295)
T PF01180_consen 258 DAIEFLMAGASAVQV 272 (295)
T ss_dssp HHHHHHHHTESEEEE
T ss_pred HHHHHHHhCCCHhee
No 463
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=32.87 E-value=5.4e+02 Score=27.79 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHc-C-----CCEEEEcccchhhhcCCCCChHhhhhHHHHHH-hccceEEecccc
Q 007349 387 VPLLQEDIIRRCRSM-Q-----KPVIVATNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGET 446 (607)
Q Consensus 387 v~~~qk~II~~c~~a-G-----KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~ET 446 (607)
.+..-.+|+++.+++ + +||++= ..|..+..++.+++.++. .|+|++.+++-|
T Consensus 190 ~~~~~~eiv~aVr~~~~~~~~~~PV~vK--------lsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 190 YGEALDELLAALKEAQAELHGYVPLLVK--------IAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred CHHHHHHHHHHHHHHHhccccCCceEEE--------eCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 444455777777764 4 899982 345555556777777655 599999998765
No 464
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=32.86 E-value=7.2e+02 Score=27.82 Aligned_cols=151 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHhHHHHHhhHhc--CCcEEEeccCCChh-HHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh-cc--EEEEcCCC
Q 007349 304 DKDWEDIKFGVDN--QVDFYAVSFVKDAK-VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA-SD--GAMVARGD 377 (607)
Q Consensus 304 ~kD~~dI~~al~~--gvD~I~~SfV~sa~-dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~-sD--GImIgRGD 377 (607)
++|.+-++.+++. |-.-+..| -+.+ ++.++.....+.|..+.+.+-.|=-++..--.-+.+. .. -|++.++=
T Consensus 200 ~kD~eVLeaaLe~~~G~kpLL~S--At~e~Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~kL~~~Gv~~eDIVlDP~t 277 (389)
T TIGR00381 200 EKDPLVLEKAAEVAEGERCLLAS--ANLDLDYEKIANAAKKYGHVVLSWTIMDINMQKTLNRYLLKRGLMPRDIVMDPTT 277 (389)
T ss_pred cCCHHHHHHHHHHhCCCCcEEEe--cCchhhHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHHHHHHcCCCHHHEEEcCCC
Q ss_pred cccCCCCCCHHHHHHHHHHHHHH----cCCCEEEEcccchhhhcCCCC-------ChHh------hhhHHHHHHhccceE
Q 007349 378 LGAELPIEDVPLLQEDIIRRCRS----MQKPVIVATNMLESMIDHPTP-------TRAE------VSDIAIAVREGADAV 440 (607)
Q Consensus 378 Lg~elg~e~v~~~qk~II~~c~~----aGKPvivaTqmLeSM~~~~~P-------trAE------v~Dv~nav~~G~D~v 440 (607)
+++..|++.....+.+|=.++-+ .|=|+|..+ -|.-...-.- .+++ +.-....+..|+|.+
T Consensus 278 ~alG~Gieya~s~~erIRraALkgD~~L~~Pii~~~--~~~w~~kEa~~~~~~wG~~~~Rg~lwE~~ta~~~~~aG~di~ 355 (389)
T TIGR00381 278 CALGYGIEFSITNMERIRLSGLKGDTDLNMPMSSGT--TNAWGAREAWMVDSEWGPREYRGPLWEIITGLTMMLAGVDLF 355 (389)
T ss_pred ccccCCHHHHHHHHHHHHHHHhcCCcCCCCCeeccc--hhhhhheeeccCCCCCCChHHhchhhhHHHHHHHHHcCCcEE
Q ss_pred EecccccCCCCHHHHHHHHHHHHHHh
Q 007349 441 MLSGETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 441 mLs~ETa~G~yPveaV~~m~~I~~~a 466 (607)
|+ .|| ++|++++++....
T Consensus 356 ~m-------~HP-~sv~~~k~~~~~l 373 (389)
T TIGR00381 356 MM-------LHP-VSVAVLKEIGNTL 373 (389)
T ss_pred EE-------eCH-HHHHHHHHHHHHH
No 465
>PRK15108 biotin synthase; Provisional
Probab=32.76 E-value=1.1e+02 Score=33.22 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=24.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCcEEEEec
Q 007349 101 TKIVCTIGPSTSSREMIWKLAEEGMNVARLNM 132 (607)
Q Consensus 101 TKIi~TiGPss~~~e~l~~li~aGm~v~RiN~ 132 (607)
..+++|+|+- +.|.+++|.++|+|.+-+|+
T Consensus 125 i~v~~s~G~l--s~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 125 LETCMTLGTL--SESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CEEEEeCCcC--CHHHHHHHHHcCCCEEeecc
Confidence 4678999964 49999999999999776654
No 466
>PLN02535 glycolate oxidase
Probab=32.57 E-value=3.2e+02 Score=30.22 Aligned_cols=95 Identities=17% Similarity=0.266 Sum_probs=51.2
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEe-ecChhhHhcHHHHHhh-ccEEEEc-CCCcccCCCCCCHHHHHHHHHHHHHH--cC
Q 007349 328 DAKVVHELKDYLKSCNADIHVIVK-IESADSIPNLHSIISA-SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRS--MQ 402 (607)
Q Consensus 328 sa~dv~~vr~~l~~~~~~i~IIAK-IEt~~av~NldeIl~~-sDGImIg-RGDLg~elg~e~v~~~qk~II~~c~~--aG 402 (607)
+-+++..+++.. +.+||+| |-+++- .....+. +|+|.+. .| |-.++.. +.....+.+...+ ..
T Consensus 211 tW~~i~~lr~~~-----~~PvivKgV~~~~d---A~~a~~~GvD~I~vsn~G--Gr~~d~~--~~t~~~L~ev~~av~~~ 278 (364)
T PLN02535 211 SWKDIEWLRSIT-----NLPILIKGVLTRED---AIKAVEVGVAGIIVSNHG--ARQLDYS--PATISVLEEVVQAVGGR 278 (364)
T ss_pred CHHHHHHHHhcc-----CCCEEEecCCCHHH---HHHHHhcCCCEEEEeCCC--cCCCCCC--hHHHHHHHHHHHHHhcC
Confidence 556666666533 4667776 434332 2233333 7888875 12 2222221 1112222222222 25
Q ss_pred CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccc
Q 007349 403 KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGET 446 (607)
Q Consensus 403 KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ET 446 (607)
.|+|.. ...-+ -.|++.++..|+|++++..-.
T Consensus 279 ipVi~d---------GGIr~---g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 279 VPVLLD---------GGVRR---GTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred CCEEee---------CCCCC---HHHHHHHHHcCCCEEEECHHH
Confidence 888873 33322 458999999999999986544
No 467
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=32.54 E-value=4e+02 Score=28.31 Aligned_cols=120 Identities=12% Similarity=0.065 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCC
Q 007349 393 DIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPV 472 (607)
Q Consensus 393 ~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~ 472 (607)
-+...|+.+|.|+.+. . |..+.-..+...-..|++.++... .+.-++.+...++..+-...++.
T Consensus 65 alA~~a~~~G~~~~iv---------~--p~~~~~~k~~~l~~~GA~v~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~ 128 (316)
T cd06448 65 AAAYAARKLGVPCTIV---------V--PESTKPRVVEKLRDEGATVVVHGK-----VWWEADNYLREELAENDPGPVYV 128 (316)
T ss_pred HHHHHHHHcCCCEEEE---------E--CCCCCHHHHHHHHHcCCEEEEECC-----chHHHHHHHHHHHHhccCCcEEe
Confidence 4567899999998773 1 222222234455678999877642 22334444444443221011111
Q ss_pred CCCCCCccccCCCChhHHHHHHHHHHHhhcC----C-CEEEEcCChHHHHHHH----hcC-CCCeEEEEeCCH
Q 007349 473 SITPPTQFSAHKSHMGDMFAFHSTTMANTLN----T-PIIVFTRTGSMAVILS----HYR-PSSTIFAFTNQE 535 (607)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~----a-~Iiv~T~sG~tA~~is----~~R-P~~PIIAvT~d~ 535 (607)
.+ +.+. ...+.-..-+.++.++++ . .||+..-+|.++.-++ .+. |+.+|+++-|..
T Consensus 129 ~~-~~n~------~~~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g 194 (316)
T cd06448 129 HP-FDDP------LIWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEG 194 (316)
T ss_pred CC-CCCc------hhhccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 11 1110 011111123456777664 4 7889999998776555 444 999999999855
No 468
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=32.42 E-value=3.4e+02 Score=28.65 Aligned_cols=94 Identities=19% Similarity=0.119 Sum_probs=52.9
Q ss_pred HHHHhh-ccEEEEcC--CCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh-hhhHHHHHHhcc
Q 007349 362 HSIISA-SDGAMVAR--GDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGA 437 (607)
Q Consensus 362 deIl~~-sDGImIgR--GDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~ 437 (607)
+..++. +||++++= |+. ..+..++-..+.+..++.+ +...||+.. ....+-.| +.-.-.|-..|+
T Consensus 28 ~~~~~~Gv~gi~v~GstGE~-~~Ls~~Er~~l~~~~~~~~-~g~~pvi~g---------v~~~~t~~ai~~a~~A~~~Ga 96 (294)
T TIGR02313 28 EFQIEGGSHAISVGGTSGEP-GSLTLEERKQAIENAIDQI-AGRIPFAPG---------TGALNHDETLELTKFAEEAGA 96 (294)
T ss_pred HHHHHcCCCEEEECccCccc-ccCCHHHHHHHHHHHHHHh-CCCCcEEEE---------CCcchHHHHHHHHHHHHHcCC
Confidence 344443 79999841 111 1222234333333333333 234677763 33344444 444556677799
Q ss_pred ceEEecccccCCCCHHHHHHHHHHHHHHh
Q 007349 438 DAVMLSGETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 438 D~vmLs~ETa~G~yPveaV~~m~~I~~~a 466 (607)
|++|+..=--...-+-+.+++...|+..+
T Consensus 97 d~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 97 DAAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred CEEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 99999754433333478889999999877
No 469
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=32.29 E-value=1.4e+02 Score=32.47 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=46.0
Q ss_pred HHHHhhHhcCCcEEEeccCC------ChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh----ccEEEEcCCC
Q 007349 308 EDIKFGVDNQVDFYAVSFVK------DAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA----SDGAMVARGD 377 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~SfV~------sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~----sDGImIgRGD 377 (607)
+|...|+++|+++|.+|.-- .++-|..+.+.+..-+.++.++-- -||.+=.+|+++ +-||+|||--
T Consensus 235 eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lD----GGVR~G~DVlKALALGAk~VfiGRP~ 310 (363)
T KOG0538|consen 235 EDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLD----GGVRRGTDVLKALALGAKGVFIGRPI 310 (363)
T ss_pred HHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEe----cCcccchHHHHHHhcccceEEecCch
Confidence 56678899999999999531 234455667777666677666653 366666666665 7899999853
No 470
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=32.28 E-value=3.3e+02 Score=28.06 Aligned_cols=123 Identities=12% Similarity=0.210 Sum_probs=73.8
Q ss_pred CCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCC-ceEEEeecChhhHhcHHHHHhhccEEEEcCCCc
Q 007349 300 PSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVIVKIESADSIPNLHSIISASDGAMVARGDL 378 (607)
Q Consensus 300 p~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~-i~IIAKIEt~~av~NldeIl~~sDGImIgRGDL 378 (607)
|.|.--+...|.-+-+.|+.++.+.=+ -+|+...+|++++..+-. +++.|---| =+.++-|.+++|+.+-=
T Consensus 106 PIl~yG~e~~iq~ak~aGanGfiivDl-PpEEa~~~Rne~~k~gislvpLvaPsTt---deRmell~~~adsFiYv---- 177 (268)
T KOG4175|consen 106 PILRYGVENYIQVAKNAGANGFIIVDL-PPEEAETLRNEARKHGISLVPLVAPSTT---DERMELLVEAADSFIYV---- 177 (268)
T ss_pred HHHhhhHHHHHHHHHhcCCCceEeccC-ChHHHHHHHHHHHhcCceEEEeeCCCCh---HHHHHHHHHhhcceEEE----
Confidence 667777777788888888888776654 467777889998776544 333333333 34566677777876531
Q ss_pred ccCCCC----CCHHHHHHHHHHHHHHc--CCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 379 GAELPI----EDVPLLQEDIIRRCRSM--QKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 379 g~elg~----e~v~~~qk~II~~c~~a--GKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
--.||. +.|-.....+++..|++ .+|+-+ --..-|+.....+... +|+++..
T Consensus 178 VSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV---------GFGvst~EHf~qVgsv----aDGVvvG 235 (268)
T KOG4175|consen 178 VSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV---------GFGVSTPEHFKQVGSV----ADGVVVG 235 (268)
T ss_pred EEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE---------eeccCCHHHHHhhhhh----ccceEec
Confidence 122333 34555555566666665 467654 2345566555555544 5666653
No 471
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=32.23 E-value=2.8e+02 Score=30.79 Aligned_cols=87 Identities=7% Similarity=0.088 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHHHHhhcCCCEEEEcCChHHHHHHHhc--CCCCeEEEEeCCHHHHhh--hccCCCeEEEEeccCCCHHHH
Q 007349 486 HMGDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHY--RPSSTIFAFTNQERIKQR--LVLYQGVMPIYMQFSDDVEET 561 (607)
Q Consensus 486 ~~~~~ia~~a~~~A~~l~a~Iiv~T~sG~tA~~is~~--RP~~PIIAvT~d~~taRr--L~L~wGV~Pi~~~~~~d~d~~ 561 (607)
+..+.-|..++..+.+.+...||...||++++.+|.| +-..|.+.++|.....+. .....|+.-+.++ .+.++.
T Consensus 99 SFKdRga~~~i~~a~~~g~~~Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~--g~~d~a 176 (398)
T TIGR03844 99 SFKELEALPTMQRLKERGGKTLVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVD--GDYTDA 176 (398)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECC--CCHHHH
Confidence 3455566666666666677556666788888888766 335677777775422221 1256676655553 345666
Q ss_pred HHHHHHHHHHcCC
Q 007349 562 FSRAIKLLMDKNL 574 (607)
Q Consensus 562 i~~Al~~ake~Gl 574 (607)
.+.+.+.+++.|+
T Consensus 177 ~~~a~~~a~~~g~ 189 (398)
T TIGR03844 177 IALADRIATLPGF 189 (398)
T ss_pred HHHHHHHHHhCCc
Confidence 6666666666554
No 472
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=32.08 E-value=1.1e+02 Score=32.24 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHh-hccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcc
Q 007349 332 VHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS-ASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATN 410 (607)
Q Consensus 332 v~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~-~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTq 410 (607)
+..+++.+.+.|.+..|.+- +..---+|+++++. -.|.|+.+-++ +.....+.+.|+++++|++.+.
T Consensus 86 ve~~~~rl~~INP~~~V~~i-~~~i~~e~~~~ll~~~~D~VIdaiD~----------~~~k~~L~~~c~~~~ip~I~~g- 153 (268)
T PRK15116 86 AEVMAERIRQINPECRVTVV-DDFITPDNVAEYMSAGFSYVIDAIDS----------VRPKAALIAYCRRNKIPLVTTG- 153 (268)
T ss_pred HHHHHHHHHhHCCCcEEEEE-ecccChhhHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEEC-
Confidence 44566777777877666543 32222457777774 36777765322 2345578999999999998752
Q ss_pred cchhhhcCCCCChHhhhhHHHH
Q 007349 411 MLESMIDHPTPTRAEVSDIAIA 432 (607)
Q Consensus 411 mLeSM~~~~~PtrAEv~Dv~na 432 (607)
..-....||+-++.|++..
T Consensus 154 ---Gag~k~dp~~~~~~di~~t 172 (268)
T PRK15116 154 ---GAGGQIDPTQIQVVDLAKT 172 (268)
T ss_pred ---CcccCCCCCeEEEEeeecc
Confidence 2234569999999888654
No 473
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=32.05 E-value=4.6e+02 Score=26.83 Aligned_cols=93 Identities=27% Similarity=0.267 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHhcCCCceEEEeecC---hhhHhcHHHHH-hh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcC
Q 007349 328 DAKVVHELKDYLKSCNADIHVIVKIES---ADSIPNLHSII-SA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQ 402 (607)
Q Consensus 328 sa~dv~~vr~~l~~~~~~i~IIAKIEt---~~av~NldeIl-~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aG 402 (607)
+++.+.++-+.+.+. +++|.+||=. .+.++ +-..+ +. +|+|-+--+.-+ +..++ +.++..+ .+
T Consensus 124 ~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~-la~~l~~aG~d~ihv~~~~~g---~~ad~-----~~I~~i~-~~ 191 (233)
T cd02911 124 DPERLSEFIKALKET--GVPVSVKIRAGVDVDDEE-LARLIEKAGADIIHVDAMDPG---NHADL-----KKIRDIS-TE 191 (233)
T ss_pred CHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHH-HHHHHHHhCCCEEEECcCCCC---CCCcH-----HHHHHhc-CC
Confidence 455555544444442 6788888832 12222 22222 22 787765322221 11122 2233333 57
Q ss_pred CCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 403 KPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 403 KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
+|+|. .+..-+. .|...++..|+|+||+.-
T Consensus 192 ipVIg---------nGgI~s~---eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 192 LFIIG---------NNSVTTI---ESAKEMFSYGADMVSVAR 221 (233)
T ss_pred CEEEE---------ECCcCCH---HHHHHHHHcCCCEEEEcC
Confidence 88876 4444444 356677778999999973
No 474
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=31.88 E-value=8.2e+02 Score=27.95 Aligned_cols=186 Identities=15% Similarity=0.103 Sum_probs=104.3
Q ss_pred CCCHHhHHHHHhhH-hcCCcEEEe----------ccCCChhHHHHHHHHHHhcCCCceE--EEeecChhhHhc-------
Q 007349 301 SITDKDWEDIKFGV-DNQVDFYAV----------SFVKDAKVVHELKDYLKSCNADIHV--IVKIESADSIPN------- 360 (607)
Q Consensus 301 ~lt~kD~~dI~~al-~~gvD~I~~----------SfV~sa~dv~~vr~~l~~~~~~i~I--IAKIEt~~av~N------- 360 (607)
.++..|+..|..++ +.|++.|=+ +|+ +......++.+-+. ..++.+ ++..-+.-|..+
T Consensus 21 ~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl-~e~p~e~l~~l~~~-~~~~~l~~l~r~~N~~G~~~~~dDvv~ 98 (467)
T PRK14041 21 RMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFL-NENPWERLKEIRKR-LKNTKIQMLLRGQNLVGYRHYADDVVE 98 (467)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccc-CCCHHHHHHHHHHh-CCCCEEEEEeccccccCcccccchhhH
Confidence 57888887775554 568887744 565 33445555554332 234443 334444455533
Q ss_pred --HHHHHhh-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHH-HHHhc
Q 007349 361 --LHSIISA-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAI-AVREG 436 (607)
Q Consensus 361 --ldeIl~~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~n-av~~G 436 (607)
++.-++. .|.+-+. .+..++.. .++-++.++++|+.+-.+ .++...|.-+.+.+.+.+. +...|
T Consensus 99 ~fv~~A~~~Gvd~irif-------~~lnd~~n-~~~~i~~ak~~G~~v~~~----i~~t~~p~~t~e~~~~~a~~l~~~G 166 (467)
T PRK14041 99 LFVKKVAEYGLDIIRIF-------DALNDIRN-LEKSIEVAKKHGAHVQGA----ISYTVSPVHTLEYYLEFARELVDMG 166 (467)
T ss_pred HHHHHHHHCCcCEEEEE-------EeCCHHHH-HHHHHHHHHHCCCEEEEE----EEeccCCCCCHHHHHHHHHHHHHcC
Confidence 2332332 5655543 23334443 455668899999876532 2444455445556666665 45569
Q ss_pred cceEEecccccCCCCHHHHHHHHHHHHHHhhcCCCCCCCCCCccccCCCChhHHHHHHHHHHHhhcCCCEEEEcCC
Q 007349 437 ADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLPVSITPPTQFSAHKSHMGDMFAFHSTTMANTLNTPIIVFTRT 512 (607)
Q Consensus 437 ~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a~Iiv~T~s 512 (607)
+|.+-+. +|+=.-.|.++-+.+..+-.+.. ++..-+. |-...+|.+....|-+.|+-+|=-|-+
T Consensus 167 ad~I~i~-Dt~G~l~P~~v~~Lv~~lk~~~~--vpI~~H~---------Hnt~GlA~AN~laAieaGad~vD~sv~ 230 (467)
T PRK14041 167 VDSICIK-DMAGLLTPKRAYELVKALKKKFG--VPVEVHS---------HCTTGLASLAYLAAVEAGADMFDTAIS 230 (467)
T ss_pred CCEEEEC-CccCCcCHHHHHHHHHHHHHhcC--CceEEEe---------cCCCCcHHHHHHHHHHhCCCEEEeecc
Confidence 9999995 88888899998888887765432 2111111 112234445555666667765534433
No 475
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=31.77 E-value=6.1e+02 Score=26.39 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=89.0
Q ss_pred CCCHHhHHHHHh-hHhcCCcEEEecc-CCChhHHHHHHHHHHhcCCCceEEEeecC-hhhHh-----cHHHHHhh-ccEE
Q 007349 301 SITDKDWEDIKF-GVDNQVDFYAVSF-VKDAKVVHELKDYLKSCNADIHVIVKIES-ADSIP-----NLHSIISA-SDGA 371 (607)
Q Consensus 301 ~lt~kD~~dI~~-al~~gvD~I~~Sf-V~sa~dv~~vr~~l~~~~~~i~IIAKIEt-~~av~-----NldeIl~~-sDGI 371 (607)
.++..++..|.. -.+.|+|.|=+.| ..++.++..++...+..-++..+.+..-. ..++. .++..++. .|.|
T Consensus 16 ~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i 95 (273)
T cd07941 16 SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVV 95 (273)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEE
Confidence 356677766644 4578999987643 33677766665443332123344432211 11221 23334443 5655
Q ss_pred EEc--CCCccc----CCCCCCHHHHHHHHHHHHHHcCCCEEEE-cccchhhhcCCCCChHhhhhHHHH-HHhccceEEec
Q 007349 372 MVA--RGDLGA----ELPIEDVPLLQEDIIRRCRSMQKPVIVA-TNMLESMIDHPTPTRAEVSDIAIA-VREGADAVMLS 443 (607)
Q Consensus 372 mIg--RGDLg~----elg~e~v~~~qk~II~~c~~aGKPviva-TqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D~vmLs 443 (607)
.+- ..|+-. ....++.....++.++.+++.|..|.+. +.+.++ ..-+...+.+.+.. ...|+|.+.|.
T Consensus 96 ~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~----~~~~~~~~~~~~~~~~~~g~~~i~l~ 171 (273)
T cd07941 96 TIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG----YKANPEYALATLKAAAEAGADWLVLC 171 (273)
T ss_pred EEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc----CCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 542 223211 1122455666678999999999987652 222121 11123334455443 45699999885
Q ss_pred ccccCCCCHHHHHHHHHHHHHHh
Q 007349 444 GETAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 444 ~ETa~G~yPveaV~~m~~I~~~a 466 (607)
+|.=...|.+.-+.++.+....
T Consensus 172 -DT~G~~~P~~v~~lv~~l~~~~ 193 (273)
T cd07941 172 -DTNGGTLPHEIAEIVKEVRERL 193 (273)
T ss_pred -cCCCCCCHHHHHHHHHHHHHhC
Confidence 8888889988877777776543
No 476
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=31.41 E-value=5.5e+02 Score=26.31 Aligned_cols=55 Identities=15% Similarity=0.274 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHH
Q 007349 389 LLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVM 459 (607)
Q Consensus 389 ~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m 459 (607)
.+....++.++++|+++++-|+ ++. . ....+...++..|+|++.- .||-.+++++
T Consensus 210 ~~~~~~v~~~~~~Gl~v~~wT~--~~~-----~--n~~~~~~~l~~~GvdgiiT-------D~p~~~~~~~ 264 (265)
T cd08564 210 FWTEEFVKKAHENGLKVMTYFD--EPV-----N--DNEEDYKVYLELGVDCICP-------NDPVLLVNFL 264 (265)
T ss_pred hhhHHHHHHHHHcCCEEEEecC--CCC-----C--CCHHHHHHHHHcCCCEEEc-------CCHHHHHHhh
Confidence 4567889999999999998762 111 1 1123445677889999765 6887777654
No 477
>PRK10425 DNase TatD; Provisional
Probab=31.27 E-value=5.9e+02 Score=26.41 Aligned_cols=106 Identities=10% Similarity=0.146 Sum_probs=59.1
Q ss_pred CCCCCCHHhH-HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCce----EEEe-e-c-ChhhHhcHHHHHhhcc
Q 007349 298 NLPSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIH----VIVK-I-E-SADSIPNLHSIISASD 369 (607)
Q Consensus 298 ~lp~lt~kD~-~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~----IIAK-I-E-t~~av~NldeIl~~sD 369 (607)
+.+.+. .|. +-++.+.+.|+..+...-+ +.++..++.++.+.. ..+. |-.. + | +.+.++.+++++..-.
T Consensus 9 ~~~~~~-~d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~-~~v~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~ 85 (258)
T PRK10425 9 TSSQFA-KDRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQY-PSCWSTAGVHPHDSSQWQAATEEAIIELAAQPE 85 (258)
T ss_pred CChhhh-ccHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhC-CCEEEEEEeCcCccccCCHHHHHHHHHhccCCC
Confidence 333343 344 4556777889877666554 677777777766543 2222 1110 1 2 2334555555554333
Q ss_pred EEEEcCCCcccCCCCC-CHHHHH----HHHHHHHHHcCCCEEEE
Q 007349 370 GAMVARGDLGAELPIE-DVPLLQ----EDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 370 GImIgRGDLg~elg~e-~v~~~q----k~II~~c~~aGKPviva 408 (607)
.+.| |..|.+.... .-...| ++.++.|.+.++|+++-
T Consensus 86 ~vaI--GEiGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH 127 (258)
T PRK10425 86 VVAI--GECGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMH 127 (258)
T ss_pred EEEE--eeeeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 3444 5566665431 234455 46778899999999984
No 478
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=31.20 E-value=6e+02 Score=26.14 Aligned_cols=149 Identities=15% Similarity=0.093 Sum_probs=85.0
Q ss_pred CCHHhHHHHH-hhHhcCCcEEEeccC------------CChhHHHHHHHHHHhcCCCceEEEeecChhh-HhcHHHHHhh
Q 007349 302 ITDKDWEDIK-FGVDNQVDFYAVSFV------------KDAKVVHELKDYLKSCNADIHVIVKIESADS-IPNLHSIISA 367 (607)
Q Consensus 302 lt~kD~~dI~-~al~~gvD~I~~SfV------------~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~a-v~NldeIl~~ 367 (607)
++..++..+. .-.+.|+|.|=+.|. ....+...++.+.+. ..+.++.+.+....+ .+.++...+.
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~~~~~~~~~~~~~~~~~~~i~~a~~~ 97 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-LKQAKLGVLLLPGIGTVDDLKMAADL 97 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-ccCCEEEEEecCCccCHHHHHHHHHc
Confidence 5667775554 445779999866421 112233334443333 234555554321111 2333333333
Q ss_pred -ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHH-HhccceEEeccc
Q 007349 368 -SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGE 445 (607)
Q Consensus 368 -sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~E 445 (607)
.|.+-+. .+..++. ..+..++.+++.|..+.+.- . +.. .-+..++.+.+..+ ..|+|.+.| .+
T Consensus 98 g~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~~--~--~~~--~~~~~~~~~~~~~~~~~G~d~i~l-~D 162 (263)
T cd07943 98 GVDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGFL--M--MSH--MASPEELAEQAKLMESYGADCVYV-TD 162 (263)
T ss_pred CCCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEEE--E--ecc--CCCHHHHHHHHHHHHHcCCCEEEE-cC
Confidence 6776653 3333443 34668899999999876532 1 112 22446666666554 459999999 58
Q ss_pred ccCCCCHHHHHHHHHHHHHHh
Q 007349 446 TAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 446 Ta~G~yPveaV~~m~~I~~~a 466 (607)
|.=.-+|.+.-+.+..+-...
T Consensus 163 T~G~~~P~~v~~lv~~l~~~~ 183 (263)
T cd07943 163 SAGAMLPDDVRERVRALREAL 183 (263)
T ss_pred CCCCcCHHHHHHHHHHHHHhC
Confidence 988899988887777776544
No 479
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=31.05 E-value=73 Score=36.32 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=37.8
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHH
Q 007349 103 IVCTIGPSTSSREMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKE 149 (607)
Q Consensus 103 Ii~TiGPss~~~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~ 149 (607)
+=+-+|.+.+..+.++.|+++|+++.=+..+||......++|+.||+
T Consensus 218 V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~ 264 (479)
T PRK07807 218 VAAAVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRA 264 (479)
T ss_pred hHhhhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHH
Confidence 33445666678899999999999999999999997766777776665
No 480
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=31.00 E-value=6.9e+02 Score=26.75 Aligned_cols=52 Identities=19% Similarity=0.321 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHc-C-----CCEEEEcccchhhhcCCCCChHhhhhHHHHH-HhccceEEecccc
Q 007349 387 VPLLQEDIIRRCRSM-Q-----KPVIVATNMLESMIDHPTPTRAEVSDIAIAV-REGADAVMLSGET 446 (607)
Q Consensus 387 v~~~qk~II~~c~~a-G-----KPvivaTqmLeSM~~~~~PtrAEv~Dv~nav-~~G~D~vmLs~ET 446 (607)
-+....+++++.++. + +|+++= ..+..+..++..++.++ ..|+|++.+++-|
T Consensus 181 ~~~~~~~iv~av~~~~~~~~~~~Pv~vK--------l~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 181 GKEALRELLTAVKEERNKLGKKVPLLVK--------IAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred CHHHHHHHHHHHHHHHhhcccCCCeEEE--------eCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 344555677776654 2 899882 24445555666776654 4599999988644
No 481
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=30.57 E-value=3.3e+02 Score=28.89 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=38.8
Q ss_pred cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHH
Q 007349 401 MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALR 465 (607)
Q Consensus 401 aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~ 465 (607)
...||++. ...-+ -+|++.++..|+|++++..--+.-+.|++-.+.|+.-...
T Consensus 188 ~~vpVivd---------AGIgt---~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 188 AKIPVIID---------AGIGT---PSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred CCCcEEEe---------CCcCC---HHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 45788872 33333 3578999999999999999999999996666665554433
No 482
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=30.56 E-value=1.6e+02 Score=28.26 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEcCChHHHHHHHhcCCCC-eEEEEeCCHHHHhhhccCCCeEEEEe
Q 007349 488 GDMFAFHSTTMANTLNTPIIVFTRTGSMAVILSHYRPSS-TIFAFTNQERIKQRLVLYQGVMPIYM 552 (607)
Q Consensus 488 ~~~ia~~a~~~A~~l~a~Iiv~T~sG~tA~~is~~RP~~-PIIAvT~d~~taRrL~L~wGV~Pi~~ 552 (607)
.+.||..|+++= .-.=.+|=.+|.|+..++++=|.. ++-.+|++-.++..|.-..++.-++.
T Consensus 6 K~~IA~~A~~~I---~~~~~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~vi~~ 68 (161)
T PF00455_consen 6 KRAIARKAASLI---EDGDTIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENPNIEVILL 68 (161)
T ss_pred HHHHHHHHHHhC---CCCCEEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcCceEEEEe
Confidence 356666655443 332245556888888888887766 88888888888888877766665554
No 483
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=30.50 E-value=7.4e+02 Score=27.19 Aligned_cols=137 Identities=20% Similarity=0.227 Sum_probs=70.9
Q ss_pred hHHHHHhhHhcCCcEEEeccCCCh---------------hHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhh---
Q 007349 306 DWEDIKFGVDNQVDFYAVSFVKDA---------------KVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISA--- 367 (607)
Q Consensus 306 D~~dI~~al~~gvD~I~~SfV~sa---------------~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~--- 367 (607)
..+|++.+.+.|+|.|.+++--|. +.+.+.-++..+.|..+.+-+.-.+..-.+.+.++++.
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 356688888999999888654443 22333444555666554444333333334444444443
Q ss_pred --ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHH-HcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec-
Q 007349 368 --SDGAMVARGDLGAELPIEDVPLLQEDIIRRCR-SMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS- 443 (607)
Q Consensus 368 --sDGImIgRGDLg~elg~e~v~~~qk~II~~c~-~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs- 443 (607)
+|.|.++ | ..|.- .|.--.++++..+ ..+.|+.+-+ +.+.-.|-.+ ...|+..|++.+=-|
T Consensus 157 ~Ga~~I~l~--D---T~G~~-~P~~v~~lv~~l~~~~~~~l~~H~--------Hnd~GlA~AN-~laAv~aGa~~vd~tv 221 (378)
T PRK11858 157 AGADRVRFC--D---TVGIL-DPFTMYELVKELVEAVDIPIEVHC--------HNDFGMATAN-ALAGIEAGAKQVHTTV 221 (378)
T ss_pred CCCCEEEEe--c---cCCCC-CHHHHHHHHHHHHHhcCCeEEEEe--------cCCcCHHHHH-HHHHHHcCCCEEEEee
Confidence 4666664 3 12321 2222233333322 3377877753 3344444222 335667888875422
Q ss_pred ---ccccCCCCHHHHHHH
Q 007349 444 ---GETAHGKFPLKAVKV 458 (607)
Q Consensus 444 ---~ETa~G~yPveaV~~ 458 (607)
|| ..|+=|.|.|-+
T Consensus 222 ~GlGe-raGNa~lE~vv~ 238 (378)
T PRK11858 222 NGLGE-RAGNAALEEVVM 238 (378)
T ss_pred ccccc-cccCccHHHHHH
Confidence 23 347778776544
No 484
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=30.48 E-value=1.4e+02 Score=31.23 Aligned_cols=69 Identities=14% Similarity=0.219 Sum_probs=41.5
Q ss_pred HhHHHHHhhHhcCCcEEEecc------CCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHh---hccEEEEcC
Q 007349 305 KDWEDIKFGVDNQVDFYAVSF------VKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIS---ASDGAMVAR 375 (607)
Q Consensus 305 kD~~dI~~al~~gvD~I~~Sf------V~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~---~sDGImIgR 375 (607)
++.++++.+++.|++.|++.. --+.+...++..++ -++..+|+ | .|+.+.+++.. .+||++||-
T Consensus 159 h~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~i---p~~~~~Is--E--SGI~t~~d~~~l~~~~davLvG~ 231 (247)
T PRK13957 159 HTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFL---PPNIVKVG--E--SGIESRSDLDKFRKLVDAALIGT 231 (247)
T ss_pred CCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhC---CCCcEEEE--c--CCCCCHHHHHHHHHhCCEEEECH
Confidence 556788889999999998863 11222223333333 23444554 3 36666666543 389999996
Q ss_pred CCccc
Q 007349 376 GDLGA 380 (607)
Q Consensus 376 GDLg~ 380 (607)
.-+..
T Consensus 232 ~lm~~ 236 (247)
T PRK13957 232 YFMEK 236 (247)
T ss_pred HHhCC
Confidence 55543
No 485
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=29.99 E-value=3.8e+02 Score=27.69 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=56.2
Q ss_pred HHHHHHhcCCCceEEEeecChhhHhcHHHHHhh--ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccc
Q 007349 335 LKDYLKSCNADIHVIVKIESADSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNML 412 (607)
Q Consensus 335 vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~--sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmL 412 (607)
+++.|.+...-..++.++=++..+ |++.. .|.|+|. | |=+..+...++. ++.+++..|..+++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~----e~~~~~g~D~v~iD---l--EH~~~~~~~~~~-~~~a~~~~g~~~~V----- 67 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAA----EICAGAGFDWLLID---G--EHAPNDVRTILS-QLQALAPYPSSPVV----- 67 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHH----HHHHhcCCCEEEEe---c--cCCCCCHHHHHH-HHHHHHhcCCCcEE-----
Confidence 455565422224466666555443 34433 7999995 3 333335555555 77888888988887
Q ss_pred hhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 413 ESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 413 eSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
.-|.++.. ++..++..|+|+||+-
T Consensus 68 ----Rv~~~~~~---~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 68 ----RPAIGDPV---LIKQLLDIGAQTLLVP 91 (249)
T ss_pred ----ECCCCCHH---HHHHHhCCCCCEEEec
Confidence 55555554 7889999999999985
No 486
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=29.95 E-value=5.3e+02 Score=28.18 Aligned_cols=106 Identities=13% Similarity=0.179 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHhcCCCceEEEeecChhhHhcHHHHHhhccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEE
Q 007349 329 AKVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVA 408 (607)
Q Consensus 329 a~dv~~vr~~l~~~~~~i~IIAKIEt~~av~NldeIl~~sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPviva 408 (607)
.+.+..++++.++.| +.+++-+-..+.++-+ .+.+|.+-||-+++- +-.+++.+.+.||||++.
T Consensus 143 ~~gL~~L~~~~~~~G--l~v~tev~d~~~~~~l---~~~vd~lqIgAr~~~-----------N~~LL~~va~~~kPViLk 206 (335)
T PRK08673 143 EEGLKLLAEAREETG--LPIVTEVMDPRDVELV---AEYVDILQIGARNMQ-----------NFDLLKEVGKTNKPVLLK 206 (335)
T ss_pred HHHHHHHHHHHHHcC--CcEEEeeCCHHHHHHH---HHhCCeEEECccccc-----------CHHHHHHHHcCCCcEEEe
Confidence 344555666666543 6788877776665554 455899999976653 234666777899999996
Q ss_pred cccchhhhcCCCCChHhhhhHHHHHH-hccceEEeccc-c-cCCCCHHHHHHH
Q 007349 409 TNMLESMIDHPTPTRAEVSDIAIAVR-EGADAVMLSGE-T-AHGKFPLKAVKV 458 (607)
Q Consensus 409 TqmLeSM~~~~~PtrAEv~Dv~nav~-~G~D~vmLs~E-T-a~G~yPveaV~~ 458 (607)
|.|. .|-.|+...+..+. .|.+-++|..- + ..-.||.+.+.+
T Consensus 207 ~G~~--------~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl 251 (335)
T PRK08673 207 RGMS--------ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDL 251 (335)
T ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhH
Confidence 5433 35567777776665 56765666421 3 444676666554
No 487
>PLN02417 dihydrodipicolinate synthase
Probab=29.90 E-value=3.9e+02 Score=27.95 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=48.8
Q ss_pred ccEEEEc-CCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh-hhhHHHHHHhccceEEeccc
Q 007349 368 SDGAMVA-RGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE-VSDIAIAVREGADAVMLSGE 445 (607)
Q Consensus 368 sDGImIg-RGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE-v~Dv~nav~~G~D~vmLs~E 445 (607)
+|||++. -.-=+..+..++-..+.+..++.+ ....|+++ ....++-.| +.-.-.|-..|+|++|+..=
T Consensus 36 v~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~-~~~~pvi~---------gv~~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 36 AEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GGKIKVIG---------NTGSNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred CCEEEECccCcchhhCCHHHHHHHHHHHHHHh-CCCCcEEE---------ECCCccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 8999984 111111222233222222222221 23467776 333433344 55566788999999999754
Q ss_pred ccCCCCHHHHHHHHHHHHHHh
Q 007349 446 TAHGKFPLKAVKVMHTVALRT 466 (607)
Q Consensus 446 Ta~G~yPveaV~~m~~I~~~a 466 (607)
.-...-+-+.+++...|+...
T Consensus 106 ~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 106 YYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred ccCCCCHHHHHHHHHHHHhhC
Confidence 322222467888888888755
No 488
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=29.87 E-value=1.4e+02 Score=29.86 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=36.9
Q ss_pred HHHHhhHhcCCcEEEecc--------CCChhHHHHHHHHHHhcCCCceEEE--eecChhhHhcHHHHHhh-ccEEEEcCC
Q 007349 308 EDIKFGVDNQVDFYAVSF--------VKDAKVVHELKDYLKSCNADIHVIV--KIESADSIPNLHSIISA-SDGAMVARG 376 (607)
Q Consensus 308 ~dI~~al~~gvD~I~~Sf--------V~sa~dv~~vr~~l~~~~~~i~IIA--KIEt~~av~NldeIl~~-sDGImIgRG 376 (607)
+++..+.+.|+|+|.++. .....+...+++..+.. ++++++ -|-|+ +++.++++. +||+++|+.
T Consensus 130 ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~---~~~~~~l~~GadgV~iGsa 204 (221)
T PRK01130 130 EEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTP---EQAKKALELGAHAVVVGGA 204 (221)
T ss_pred HHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCH---HHHHHHHHCCCCEEEEchH
Confidence 345677889999987631 11222333444443332 355665 33332 556666666 899999965
No 489
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=29.77 E-value=5.5e+02 Score=27.22 Aligned_cols=114 Identities=24% Similarity=0.332 Sum_probs=64.0
Q ss_pred HHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCC-ceEEEeecChhhHhcHHHHHhhccEEEE--cC-CCcccCCCCC
Q 007349 310 IKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNAD-IHVIVKIESADSIPNLHSIISASDGAMV--AR-GDLGAELPIE 385 (607)
Q Consensus 310 I~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~-i~IIAKIEt~~av~NldeIl~~sDGImI--gR-GDLg~elg~e 385 (607)
++.+.+.|+|++.++=. -.+.-.++.++.++.|-+ +.+++-- .--+.++.|++.++|.+- +| |==|++.+
T Consensus 115 ~~~~~~~GvdGlivpDL-P~ee~~~~~~~~~~~gi~~I~lvaPt---t~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~-- 188 (265)
T COG0159 115 LRRAKEAGVDGLLVPDL-PPEESDELLKAAEKHGIDPIFLVAPT---TPDERLKKIAEAASGFIYYVSRMGVTGARNP-- 188 (265)
T ss_pred HHHHHHcCCCEEEeCCC-ChHHHHHHHHHHHHcCCcEEEEeCCC---CCHHHHHHHHHhCCCcEEEEecccccCCCcc--
Confidence 55666788888887643 223334566666655544 3333322 233678888888876654 33 22222222
Q ss_pred CHHHHHHHHHHHHHH-cCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEec
Q 007349 386 DVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLS 443 (607)
Q Consensus 386 ~v~~~qk~II~~c~~-aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs 443 (607)
+...-++.++..|+ .++|+.+ --..-+++.+.++..+ +|++...
T Consensus 189 -~~~~~~~~v~~vr~~~~~Pv~v---------GFGIs~~e~~~~v~~~----ADGVIVG 233 (265)
T COG0159 189 -VSADVKELVKRVRKYTDVPVLV---------GFGISSPEQAAQVAEA----ADGVIVG 233 (265)
T ss_pred -cchhHHHHHHHHHHhcCCCeEE---------ecCcCCHHHHHHHHHh----CCeEEEc
Confidence 22234566666665 4888876 3455556655555554 7777764
No 490
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=29.68 E-value=2.9e+02 Score=28.23 Aligned_cols=61 Identities=20% Similarity=0.077 Sum_probs=34.1
Q ss_pred CceEEEEEEEEeCCeEEEEEEeCcEecCCCccccCCCcc--CCCCCCHHhHHHHHhhHhcCCcEEEe
Q 007349 259 GGMMSLAVKSKTKDLVKCIVVDGGELKSRRHLNVRGKSA--NLPSITDKDWEDIKFGVDNQVDFYAV 323 (607)
Q Consensus 259 DG~i~l~V~~~~~~~i~c~V~~gG~l~s~Kgvn~p~~~~--~lp~lt~kD~~dI~~al~~gvD~I~~ 323 (607)
++.-..++.+.+++.+.+++...-....... +...+ .+|. .++-..-|+.+.+.|++-|..
T Consensus 45 g~~~~a~i~~~~~~~~~~~i~~~~~~~~~~~---~~i~l~~al~K-~~~~d~il~katELGv~~i~p 107 (240)
T TIGR00046 45 GFIYHCEIKKISKKFVKCELLEGESEKRELP---LKIHLAIVLIK-GKKMEFIIRKLTELGVSKIIP 107 (240)
T ss_pred CCEEEEEEEEEcCCeEEEEEEecccCCCCCC---cEEEEEEeecC-CccHHHHHHHHHHcCCCEEEE
Confidence 3445667778888888888754322211111 11222 2333 233445668899999998653
No 491
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=29.54 E-value=1.7e+02 Score=31.66 Aligned_cols=63 Identities=16% Similarity=0.293 Sum_probs=49.2
Q ss_pred CCceEEEecCCCCC----C--------------HHHHHHHHHhCCcEEEEecCCCChHHHHHHHHHHHHHHhhcCCceEE
Q 007349 99 RKTKIVCTIGPSTS----S--------------REMIWKLAEEGMNVARLNMSHGDHASHQKTIDLVKEYNSQFEDKAVA 160 (607)
Q Consensus 99 r~TKIi~TiGPss~----~--------------~e~l~~li~aGm~v~RiN~sHg~~~~~~~~i~~iR~~~~~~~~~~i~ 160 (607)
|++=|..||||.+. + .|+++.|++-|+|++-|---.. ..+.+..+..+|+..++.+ ..++
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D-~l~~KaA~~a~~~~~~~~~-~~LP 190 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFD-TLNAKAAVFAAREVFEELG-VRLP 190 (311)
T ss_pred CceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhcc-HHHHHHHHHHHHHHHHhcC-Cccc
Confidence 67888999999763 2 3678899999999999976554 4567889999999988877 5555
Q ss_pred EEe
Q 007349 161 IML 163 (607)
Q Consensus 161 I~~ 163 (607)
||+
T Consensus 191 v~~ 193 (311)
T COG0646 191 VMI 193 (311)
T ss_pred EEE
Confidence 554
No 492
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=29.47 E-value=50 Score=31.58 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHh
Q 007349 391 QEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAE 425 (607)
Q Consensus 391 qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAE 425 (607)
..++|+.-.+.|+|+++||- .+|.|.--|
T Consensus 65 ~~evi~~I~~~G~PviVAtD------V~p~P~~V~ 93 (138)
T PF04312_consen 65 RSEVIEWISEYGKPVIVATD------VSPPPETVK 93 (138)
T ss_pred HHHHHHHHHHcCCEEEEEec------CCCCcHHHH
Confidence 35788888999999999987 566666544
No 493
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=29.28 E-value=2.9e+02 Score=29.02 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=34.2
Q ss_pred hhhHHHHHHhccceEEecccccC---CCCHHHHHHHHHHHHHHhhcCC
Q 007349 426 VSDIAIAVREGADAVMLSGETAH---GKFPLKAVKVMHTVALRTESSL 470 (607)
Q Consensus 426 v~Dv~nav~~G~D~vmLs~ETa~---G~yPveaV~~m~~I~~~aE~~~ 470 (607)
+.|.......|+|++|+.++-.. ..-+.+++..|..|+.+.=+.+
T Consensus 32 ~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~ 79 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREV 79 (254)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhC
Confidence 56667788899999999876421 1125699999999999887655
No 494
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=29.24 E-value=7.1e+02 Score=26.38 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=80.8
Q ss_pred CCCCCCHHhHHHHHhhHhcCCcEEEeccCCChhHHH---HHHHHHHhcCCCceEEEeec--ChhhHhcHHHHHhh--ccE
Q 007349 298 NLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAKVVH---ELKDYLKSCNADIHVIVKIE--SADSIPNLHSIISA--SDG 370 (607)
Q Consensus 298 ~lp~lt~kD~~dI~~al~~gvD~I~~SfV~sa~dv~---~vr~~l~~~~~~i~IIAKIE--t~~av~NldeIl~~--sDG 370 (607)
++..+|+.-.+.+ +.++|++.+.-.|+....-+. ..+.++.....+.+++++|= +++-+.+.-.++.. .|+
T Consensus 14 Pm~~~t~~~fR~l--~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~ 91 (319)
T TIGR00737 14 PMAGVTDSPFRRL--VAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEELGADI 91 (319)
T ss_pred CCCCCCcHHHHHH--HHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCE
Confidence 3445555444443 567899988888885543322 23445554455678889984 34344444444443 688
Q ss_pred EEEcCCCcccCC--------C--CCCHHHHHHHHHHHHHH-cCCCEEEEcccchhhhcCCCCChHhhhhHHHH-HHhccc
Q 007349 371 AMVARGDLGAEL--------P--IEDVPLLQEDIIRRCRS-MQKPVIVATNMLESMIDHPTPTRAEVSDIAIA-VREGAD 438 (607)
Q Consensus 371 ImIgRGDLg~el--------g--~e~v~~~qk~II~~c~~-aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~na-v~~G~D 438 (607)
|=+.=| ... | +.+-+..-.+|+++.++ .++|+.+-... ...++-.+..+.+.. ...|+|
T Consensus 92 IelN~g---cP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~------g~~~~~~~~~~~a~~l~~~G~d 162 (319)
T TIGR00737 92 IDINMG---CPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI------GWDDAHINAVEAARIAEDAGAQ 162 (319)
T ss_pred EEEECC---CCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc------ccCCCcchHHHHHHHHHHhCCC
Confidence 866422 111 1 11234555677777664 47998874321 111222234455544 456899
Q ss_pred eEEecccccCCCCH
Q 007349 439 AVMLSGETAHGKFP 452 (607)
Q Consensus 439 ~vmLs~ETa~G~yP 452 (607)
.+.+.+.|..+.|+
T Consensus 163 ~i~vh~r~~~~~~~ 176 (319)
T TIGR00737 163 AVTLHGRTRAQGYS 176 (319)
T ss_pred EEEEEcccccccCC
Confidence 99999888776663
No 495
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.16 E-value=4.1e+02 Score=29.20 Aligned_cols=122 Identities=15% Similarity=0.136 Sum_probs=76.3
Q ss_pred CceEEEeecChhhHhcHHHHHhh-ccEEEEcCCCc---ccCCCCCCHHHHHHHHHHHHHHcCCCEE-EEccc--ch----
Q 007349 345 DIHVIVKIESADSIPNLHSIISA-SDGAMVARGDL---GAELPIEDVPLLQEDIIRRCRSMQKPVI-VATNM--LE---- 413 (607)
Q Consensus 345 ~i~IIAKIEt~~av~NldeIl~~-sDGImIgRGDL---g~elg~e~v~~~qk~II~~c~~aGKPvi-vaTqm--Le---- 413 (607)
.++|...+.+....+.+..-+.. .+.||+....| -..+|+++=...-+++++.|+++|.+|= =--++ .|
T Consensus 75 ~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~ 154 (347)
T PRK09196 75 HIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMG 154 (347)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccc
Confidence 47888999888766665555544 78999986555 2234777777888999999999999871 11111 00
Q ss_pred ----hhhcCC----CCChHhhhhHHHHHH-hccceEEecccccCCCCHH--------HHHHHHHHHHHHh
Q 007349 414 ----SMIDHP----TPTRAEVSDIAIAVR-EGADAVMLSGETAHGKFPL--------KAVKVMHTVALRT 466 (607)
Q Consensus 414 ----SM~~~~----~PtrAEv~Dv~nav~-~G~D~vmLs~ETa~G~yPv--------eaV~~m~~I~~~a 466 (607)
...... .-..-...+...++. -|+|++-.+--|+.|.|+- --...+.+|..+.
T Consensus 155 g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v 224 (347)
T PRK09196 155 GEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARL 224 (347)
T ss_pred ccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcC
Confidence 000000 000111234557774 6999999999999999953 2344555554443
No 496
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=29.07 E-value=1.7e+02 Score=30.51 Aligned_cols=88 Identities=17% Similarity=0.304 Sum_probs=60.0
Q ss_pred hhHhcHHHHHhh--ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhcCC-CCChHhhhhHHHH
Q 007349 356 DSIPNLHSIISA--SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMIDHP-TPTRAEVSDIAIA 432 (607)
Q Consensus 356 ~av~NldeIl~~--sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~~~-~PtrAEv~Dv~na 432 (607)
....+++++++. +|.|+|+ .|. ..-..++.+|-++||+|++ +.| .+|-+|...+..+
T Consensus 54 ~~~~~~~~ll~~~~iD~V~Ia-------tp~----~~H~e~~~~AL~aGkhVl~---------EKPla~t~~ea~~l~~~ 113 (342)
T COG0673 54 KAYTDLEELLADPDIDAVYIA-------TPN----ALHAELALAALEAGKHVLC---------EKPLALTLEEAEELVEL 113 (342)
T ss_pred cccCCHHHHhcCCCCCEEEEc-------CCC----hhhHHHHHHHHhcCCEEEE---------cCCCCCCHHHHHHHHHH
Confidence 578889999986 7999997 332 2345567889999999999 555 6778888877777
Q ss_pred HHhccceEEecccccCCCCHHHHHHHHHHHHHHhh
Q 007349 433 VREGADAVMLSGETAHGKFPLKAVKVMHTVALRTE 467 (607)
Q Consensus 433 v~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE 467 (607)
.... ...+.-+. .-.|- -+++.+++++.+-+
T Consensus 114 a~~~-~~~l~v~~--~~Rf~-p~~~~~k~li~~g~ 144 (342)
T COG0673 114 ARKA-GVKLMVGF--NRRFD-PAVQALKELIDSGA 144 (342)
T ss_pred HHHc-CCceeeeh--hhhcC-HHHHHHHHHHhcCC
Confidence 7765 32222222 11222 47888888877654
No 497
>PRK08246 threonine dehydratase; Provisional
Probab=28.97 E-value=7.2e+02 Score=26.32 Aligned_cols=119 Identities=12% Similarity=0.121 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecccccCCCCHHHHHHHHHHHHHHhhcCCC
Q 007349 392 EDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTESSLP 471 (607)
Q Consensus 392 k~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ETa~G~yPveaV~~m~~I~~~aE~~~~ 471 (607)
.-+...|+..|.++.+. .|..+ .-..+...-..|++.+...+ . ..++++...+++.+. ..++
T Consensus 81 ~a~A~~a~~~G~~~~iv---------~p~~~--~~~k~~~~~~~GA~V~~~~~-----~-~~~~~~~a~~~~~~~-g~~~ 142 (310)
T PRK08246 81 LAVAYAAAALGVPATVF---------VPETA--PPAKVARLRALGAEVVVVGA-----E-YADALEAAQAFAAET-GALL 142 (310)
T ss_pred HHHHHHHHHcCCCEEEE---------ECCCC--cHHHHHHHHHCCCEEEEeCC-----C-HHHHHHHHHHHHHhc-CCEe
Confidence 34566899999998773 22222 12234466678999877643 2 345666655554332 1111
Q ss_pred CCCCCCCccccCCCChhHHHHHHHHHHHhhcCC--CEEEEcCChHHHHHHHhc-CCCCeEEEEeCCH
Q 007349 472 VSITPPTQFSAHKSHMGDMFAFHSTTMANTLNT--PIIVFTRTGSMAVILSHY-RPSSTIFAFTNQE 535 (607)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~ia~~a~~~A~~l~a--~Iiv~T~sG~tA~~is~~-RP~~PIIAvT~d~ 535 (607)
...|.+. ...+.-.-.+.++.++++. .||+.+-+|.++.-++++ ++...|+++-+..
T Consensus 143 -~~~~~n~------~~i~g~~t~~~Ei~eq~~~~D~iv~~vG~GG~~~Gi~~~~~~~~~vi~ve~~~ 202 (310)
T PRK08246 143 -CHAYDQP------EVLAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAGIAAWFEGRARVVAVEPEG 202 (310)
T ss_pred -CCCCCCh------hhhcchHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHhcCCCEEEEEeeCC
Confidence 1112111 0111122345577777754 788899899888777754 5667999999854
No 498
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=28.91 E-value=3e+02 Score=31.93 Aligned_cols=160 Identities=18% Similarity=0.217 Sum_probs=89.1
Q ss_pred EecCCCccccCCCccCCCCCCHHhH-HHHHhhHhcCCcEEEeccCCChhHHHHHHHHHHhcCCCceEEEeecChhhHhcH
Q 007349 283 ELKSRRHLNVRGKSANLPSITDKDW-EDIKFGVDNQVDFYAVSFVKDAKVVHELKDYLKSCNADIHVIVKIESADSIPNL 361 (607)
Q Consensus 283 ~l~s~Kgvn~p~~~~~lp~lt~kD~-~dI~~al~~gvD~I~~SfV~sa~dv~~vr~~l~~~~~~i~IIAKIEt~~av~Nl 361 (607)
.|++ .+++|=..+. +|--|. +.|..+..++-.+-.+.|-+....+..+.+++ +-++.++.=-...++-..+
T Consensus 77 ~i~~--~~~iPVv~i~---~s~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l---~~~i~~~~~~~~~e~~~~v 148 (538)
T PRK15424 77 YLKS--RLSVPVILIK---PSGFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTF---NLRIEQRSYVTEEDARGQI 148 (538)
T ss_pred HHHh--hCCCCEEEec---CCHhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHh---CCceEEEEecCHHHHHHHH
Confidence 4454 4677766665 466776 77778887777777788877777777787777 4566665544444555556
Q ss_pred HHHHhh-ccEEEEcCC---CcccCCCC--------CCHHHHHHHHHHHHHHcCCC--------EEEEcccchhhhcCCCC
Q 007349 362 HSIISA-SDGAMVARG---DLGAELPI--------EDVPLLQEDIIRRCRSMQKP--------VIVATNMLESMIDHPTP 421 (607)
Q Consensus 362 deIl~~-sDGImIgRG---DLg~elg~--------e~v~~~qk~II~~c~~aGKP--------vivaTqmLeSM~~~~~P 421 (607)
.++-+. ++.|+ |.+ |++.+.|+ +.+..+.++.++.++..... -..+..-++.|+- ..|
T Consensus 149 ~~lk~~G~~~vv-G~~~~~~~A~~~g~~g~~~~s~e~i~~a~~~A~~~~~~~~~~~~~~~~~~~~~~~~~f~~iiG-~S~ 226 (538)
T PRK15424 149 NELKANGIEAVV-GAGLITDLAEEAGMTGIFIYSAATVRQAFEDALDMTRMTLRHNTHYATRNALRTRYVLGDLLG-QSP 226 (538)
T ss_pred HHHHHCCCCEEE-cCchHHHHHHHhCCceEEecCHHHHHHHHHHHHHHHHHHhhhhhccchhhhhccccchhheee-CCH
Confidence 665554 44443 433 55555555 23333333333322211100 0111112333322 233
Q ss_pred ChHhhhhHHHHHHhccceEEecccccCCCCH
Q 007349 422 TRAEVSDIAIAVREGADAVMLSGETAHGKFP 452 (607)
Q Consensus 422 trAEv~Dv~nav~~G~D~vmLs~ETa~G~yP 452 (607)
...++..-+..+...---||+.||+-.||--
T Consensus 227 ~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~ 257 (538)
T PRK15424 227 QMEQVRQTILLYARSSAAVLIQGETGTGKEL 257 (538)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence 3344444444445555579999999999943
No 499
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.79 E-value=7.2e+02 Score=26.32 Aligned_cols=84 Identities=21% Similarity=0.196 Sum_probs=42.5
Q ss_pred CceEEEeec-----ChhhHhcHHHHHh-h-ccEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHcCCCEEEEcccchhhhc
Q 007349 345 DIHVIVKIE-----SADSIPNLHSIIS-A-SDGAMVARGDLGAELPIEDVPLLQEDIIRRCRSMQKPVIVATNMLESMID 417 (607)
Q Consensus 345 ~i~IIAKIE-----t~~av~NldeIl~-~-sDGImIgRGDLg~elg~e~v~~~qk~II~~c~~aGKPvivaTqmLeSM~~ 417 (607)
.++|.+||- +..-...+-..++ . +|+|.+....- .-++.. +.....+-+.....++|++. .
T Consensus 131 ~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~--~~~~~~-~~~~~~i~~i~~~~~ipvi~---------n 198 (319)
T TIGR00737 131 DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTR--AQGYSG-EANWDIIARVKQAVRIPVIG---------N 198 (319)
T ss_pred CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccc--cccCCC-chhHHHHHHHHHcCCCcEEE---------e
Confidence 378999982 2211122222222 2 68887742111 111111 11122333334446799887 4
Q ss_pred CCCCChHhhhhHHHHH-HhccceEEec
Q 007349 418 HPTPTRAEVSDIAIAV-REGADAVMLS 443 (607)
Q Consensus 418 ~~~PtrAEv~Dv~nav-~~G~D~vmLs 443 (607)
...-+.. |+..++ ..|+|++|+.
T Consensus 199 GgI~~~~---da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 199 GDIFSPE---DAKAMLETTGCDGVMIG 222 (319)
T ss_pred CCCCCHH---HHHHHHHhhCCCEEEEC
Confidence 5555544 455666 4689999995
No 500
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=28.75 E-value=2.1e+02 Score=28.86 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCCCEEEEcccchhhhcCCCCChHhhhhHHHHHHhccceEEecc
Q 007349 390 LQEDIIRRCRSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGADAVMLSG 444 (607)
Q Consensus 390 ~qk~II~~c~~aGKPvivaTqmLeSM~~~~~PtrAEv~Dv~nav~~G~D~vmLs~ 444 (607)
.-.++++.|+++|.|++=- .-| -+++..|...|+|.+=+=-
T Consensus 89 ~~~~v~~~~~~~~i~~iPG-----------~~T---ptEi~~A~~~G~~~vK~FP 129 (196)
T PF01081_consen 89 FDPEVIEYAREYGIPYIPG-----------VMT---PTEIMQALEAGADIVKLFP 129 (196)
T ss_dssp --HHHHHHHHHHTSEEEEE-----------ESS---HHHHHHHHHTT-SEEEETT
T ss_pred CCHHHHHHHHHcCCcccCC-----------cCC---HHHHHHHHHCCCCEEEEec
Confidence 4578999999999998631 112 2457799999999988743
Done!