BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007350
(607 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UYD|X Chain X, Crystal Structure Of The Smhasa Mutant H83a
Length = 188
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 456 FVRPDQTSLMILNNPQAVLSGSFDHLSVGNAAAGGSYFP 494
FV + + N P A L G D LS G+ +GG P
Sbjct: 67 FVAGGNLTYTLFNEPAATLYGQLDSLSFGDGLSGGDTSP 105
>pdb|2VX4|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Native Form
pdb|2VX6|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Gal1man4-Bound
Form
Length = 396
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 546 HEACYSYGIQYEPPMDQTYKQDLSRGSGKAVVGW 579
HE +YG+ +E MD++ +D++ G+ AV GW
Sbjct: 61 HEDSLAYGVHWEGDMDRSDVRDVT-GANPAVYGW 93
>pdb|2HZP|A Chain A, Crystal Structure Of Homo Sapiens Kynureninase
Length = 501
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 152 FNEEEDDNWTKEHFESHEVKEREGKRPILTGD 183
+ EEE D W K HEV GKRP +TGD
Sbjct: 122 YLEEELDKWAKIAAYGHEV----GKRPWITGD 149
>pdb|2VX7|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Mannobiose-Bound
Form
Length = 396
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 546 HEACYSYGIQYEPPMDQTYKQDLSRGSGKAVVGW 579
HE +YG+ +E MD++ +D++ G+ AV GW
Sbjct: 61 HEDSLAYGVHWEGDMDRSDVRDVT-GANPAVYGW 93
>pdb|2VX5|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Mannose-Bound Form
Length = 396
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 546 HEACYSYGIQYEPPMDQTYKQDLSRGSGKAVVGW 579
HE +YG+ +E MD++ +D++ G+ AV GW
Sbjct: 61 HEDSLAYGVHWEGDMDRSDVRDVT-GANPAVYGW 93
>pdb|3E9K|A Chain A, Crystal Structure Of Homo Sapiens
Kynureninase-3-Hydroxyhippuric Acid Inhibitor Complex
Length = 465
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 152 FNEEEDDNWTKEHFESHEVKEREGKRPILTGD 183
+ EEE D W K HEV GKRP +TGD
Sbjct: 86 YLEEELDKWAKIAAYGHEV----GKRPWITGD 113
>pdb|3KLN|A Chain A, Vibrio Cholerae Vpst
pdb|3KLN|B Chain B, Vibrio Cholerae Vpst
pdb|3KLN|C Chain C, Vibrio Cholerae Vpst
pdb|3KLN|D Chain D, Vibrio Cholerae Vpst
pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp
pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp
pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp
pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp
Length = 225
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 236 FAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLMKADIVTVEDFLRILVRDPQK 295
F + D L K L DE+W ++A++ LH + + +VT + + ++ R+ Q
Sbjct: 110 FYIDDDMDTLIKG-MSKILQDEMWLTRKLAQEYILHYRAGNS-VVTSQMYAKLTKREQQI 167
Query: 296 LRNILGSGMSN 306
++ +LGSG SN
Sbjct: 168 IK-LLGSGASN 177
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 317 KTCVLGGKLYVYYADGTQNTGVVFNNIYELRGLIDDGQFVSLESLTHSQKISVDSLVK-- 374
K + G ++ +AD T TG + ++ +L+G ID + L S K S+ L K
Sbjct: 296 KMITIRGSVHQNFADFTFATGKIIGHMLKLKGDIDSNVAIDL-----SNKASLAFLQKHL 350
Query: 375 ---RAYDNWHQVLEYDGKFLSSLTN 396
+ +D W ++E D + L TN
Sbjct: 351 GLHKDFDQWDCLIEGDDENLIPGTN 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,122,046
Number of Sequences: 62578
Number of extensions: 819246
Number of successful extensions: 1783
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1782
Number of HSP's gapped (non-prelim): 9
length of query: 607
length of database: 14,973,337
effective HSP length: 104
effective length of query: 503
effective length of database: 8,465,225
effective search space: 4258008175
effective search space used: 4258008175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)