Query 007355
Match_columns 606
No_of_seqs 362 out of 2048
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 22:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2337 Ubiquitin activating E 100.0 3E-158 5E-163 1250.2 39.9 562 12-606 5-569 (669)
2 TIGR01381 E1_like_apg7 E1-like 100.0 2E-147 5E-152 1219.9 54.2 557 17-606 1-565 (664)
3 cd01486 Apg7 Apg7 is an E1-lik 100.0 4E-65 8.8E-70 524.8 23.6 224 366-606 1-226 (307)
4 KOG2017 Molybdopterin synthase 100.0 1.4E-40 3E-45 341.1 12.0 204 342-603 41-251 (427)
5 PRK07411 hypothetical protein; 100.0 8.3E-39 1.8E-43 345.2 23.2 202 345-604 16-224 (390)
6 PRK05690 molybdopterin biosynt 100.0 1.7E-38 3.8E-43 322.9 22.4 202 346-603 11-216 (245)
7 TIGR02355 moeB molybdopterin s 100.0 3.1E-38 6.6E-43 320.2 21.9 202 346-603 3-208 (240)
8 PRK08223 hypothetical protein; 100.0 8.5E-38 1.8E-42 322.2 22.0 207 343-603 5-240 (287)
9 PRK05597 molybdopterin biosynt 100.0 7.2E-38 1.6E-42 334.2 22.0 201 345-603 6-213 (355)
10 TIGR02356 adenyl_thiF thiazole 100.0 7.2E-38 1.6E-42 309.7 20.3 198 347-600 1-202 (202)
11 cd00757 ThiF_MoeB_HesA_family 100.0 1.6E-37 3.4E-42 312.4 21.4 199 347-604 1-206 (228)
12 PRK07878 molybdopterin biosynt 100.0 2.5E-37 5.3E-42 334.1 22.5 204 346-603 21-231 (392)
13 PRK08328 hypothetical protein; 100.0 7.1E-37 1.5E-41 308.6 22.0 199 346-604 8-209 (231)
14 PRK12475 thiamine/molybdopteri 100.0 7.4E-37 1.6E-41 324.2 22.6 205 345-604 2-210 (338)
15 PRK05600 thiamine biosynthesis 100.0 1.6E-36 3.4E-41 325.1 22.3 204 345-603 19-229 (370)
16 PRK07688 thiamine/molybdopteri 100.0 3.4E-36 7.3E-41 319.3 22.1 202 345-604 2-210 (339)
17 PRK08762 molybdopterin biosynt 100.0 1.5E-34 3.2E-39 311.0 22.9 205 346-604 114-325 (376)
18 cd01492 Aos1_SUMO Ubiquitin ac 100.0 3.2E-33 7E-38 275.6 19.4 174 347-604 3-178 (197)
19 COG0476 ThiF Dinucleotide-util 100.0 3E-33 6.6E-38 285.4 19.8 203 346-604 9-218 (254)
20 cd01485 E1-1_like Ubiquitin ac 100.0 9E-33 1.9E-37 272.7 19.5 175 347-604 1-179 (198)
21 PRK08644 thiamine biosynthesis 100.0 3.5E-32 7.7E-37 271.1 20.1 191 354-604 18-210 (212)
22 cd01484 E1-2_like Ubiquitin ac 100.0 1.2E-30 2.7E-35 263.3 19.7 174 366-597 1-176 (234)
23 TIGR03603 cyclo_dehy_ocin bact 100.0 3.5E-30 7.6E-35 271.0 16.4 186 346-603 53-261 (318)
24 TIGR02354 thiF_fam2 thiamine b 100.0 2E-29 4.4E-34 249.2 19.3 183 357-600 14-200 (200)
25 cd01487 E1_ThiF_like E1_ThiF_l 100.0 1.9E-29 4.2E-34 244.2 18.5 172 366-597 1-174 (174)
26 TIGR01408 Ube1 ubiquitin-activ 100.0 1.5E-29 3.1E-34 298.3 19.6 236 309-602 354-608 (1008)
27 PF00899 ThiF: ThiF family; I 100.0 4.9E-29 1.1E-33 230.8 18.1 133 363-515 1-134 (135)
28 PRK14852 hypothetical protein; 100.0 6.8E-29 1.5E-33 287.3 22.1 162 336-517 303-468 (989)
29 cd01489 Uba2_SUMO Ubiquitin ac 100.0 4.4E-29 9.4E-34 261.3 18.1 133 366-517 1-134 (312)
30 cd01488 Uba3_RUB Ubiquitin act 100.0 5.2E-29 1.1E-33 258.3 18.2 130 366-516 1-139 (291)
31 PRK07877 hypothetical protein; 100.0 5.5E-29 1.2E-33 284.5 19.1 140 345-506 87-228 (722)
32 cd01491 Ube1_repeat1 Ubiquitin 100.0 4.3E-29 9.2E-34 258.5 15.4 147 348-518 2-150 (286)
33 PRK14851 hypothetical protein; 100.0 2E-28 4.3E-33 279.2 21.4 153 345-517 23-179 (679)
34 cd01490 Ube1_repeat2 Ubiquitin 100.0 4E-28 8.8E-33 263.1 20.8 181 366-604 1-190 (435)
35 KOG2013 SMT3/SUMO-activating c 99.9 2.4E-28 5.3E-33 259.3 9.1 185 359-602 7-194 (603)
36 cd01483 E1_enzyme_family Super 99.9 9.8E-27 2.1E-31 217.2 16.4 132 366-517 1-133 (143)
37 cd00755 YgdL_like Family of ac 99.9 1.7E-26 3.7E-31 233.0 15.3 131 355-505 2-133 (231)
38 PRK15116 sulfur acceptor prote 99.9 2.5E-26 5.5E-31 235.9 16.1 140 346-505 11-152 (268)
39 cd01493 APPBP1_RUB Ubiquitin a 99.9 1.2E-25 2.7E-30 244.4 16.1 154 347-518 2-157 (425)
40 KOG2015 NEDD8-activating compl 99.9 1.6E-25 3.5E-30 228.5 12.0 138 358-516 34-182 (422)
41 TIGR01408 Ube1 ubiquitin-activ 99.9 1.1E-24 2.5E-29 257.1 17.7 150 346-519 5-158 (1008)
42 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 3.7E-24 8.1E-29 217.1 18.2 190 362-602 9-220 (244)
43 PRK06153 hypothetical protein; 99.9 1.5E-24 3.2E-29 230.7 14.7 129 359-510 171-302 (393)
44 COG1179 Dinucleotide-utilizing 99.9 2.5E-24 5.5E-29 214.1 12.5 141 345-505 10-152 (263)
45 KOG2012 Ubiquitin activating e 99.9 3.5E-24 7.6E-29 238.9 9.3 190 310-517 365-575 (1013)
46 KOG2336 Molybdopterin biosynth 99.9 3.3E-23 7E-28 208.2 13.2 213 337-603 52-285 (422)
47 PTZ00245 ubiquitin activating 99.8 7.4E-21 1.6E-25 191.1 11.1 98 345-446 6-104 (287)
48 KOG2014 SMT3/SUMO-activating c 99.8 3.6E-20 7.8E-25 188.6 13.3 162 334-519 3-166 (331)
49 KOG2018 Predicted dinucleotide 99.8 6.6E-19 1.4E-23 179.8 9.8 137 353-509 63-201 (430)
50 KOG2012 Ubiquitin activating e 99.7 2.2E-17 4.8E-22 185.1 11.2 153 342-519 15-169 (1013)
51 KOG2016 NEDD8-activating compl 99.7 1E-16 2.2E-21 170.1 7.8 153 346-516 8-162 (523)
52 TIGR03693 ocin_ThiF_like putat 99.6 4.4E-14 9.5E-19 157.4 16.1 172 359-603 124-302 (637)
53 PF01488 Shikimate_DH: Shikima 98.2 5.6E-06 1.2E-10 77.1 8.4 81 360-487 8-88 (135)
54 COG1748 LYS9 Saccharopine dehy 98.1 1.4E-05 3.1E-10 86.7 11.1 98 365-506 2-99 (389)
55 PRK12549 shikimate 5-dehydroge 98.0 1.8E-05 3.8E-10 82.9 9.4 77 362-483 125-201 (284)
56 PRK12548 shikimate 5-dehydroge 97.7 0.00025 5.4E-09 74.4 10.5 85 362-483 124-208 (289)
57 PF03435 Saccharop_dh: Sacchar 97.6 0.00024 5.1E-09 77.0 9.8 96 367-505 1-97 (386)
58 PRK14027 quinate/shikimate deh 97.6 0.00026 5.6E-09 74.2 9.6 79 362-483 125-203 (283)
59 COG4015 Predicted dinucleotide 97.6 0.00036 7.7E-09 66.8 8.9 117 364-505 18-140 (217)
60 PRK12749 quinate/shikimate deh 97.5 0.00042 9E-09 72.8 9.2 83 362-482 122-204 (288)
61 TIGR01809 Shik-DH-AROM shikima 97.4 0.00046 1E-08 72.2 8.4 78 362-484 123-200 (282)
62 PRK06718 precorrin-2 dehydroge 97.2 0.0017 3.7E-08 64.7 9.9 92 361-503 7-98 (202)
63 COG0169 AroE Shikimate 5-dehyd 97.2 0.00086 1.9E-08 70.3 7.6 52 362-435 124-175 (283)
64 COG0373 HemA Glutamyl-tRNA red 97.1 0.0013 2.9E-08 72.0 8.4 76 361-486 175-250 (414)
65 cd05213 NAD_bind_Glutamyl_tRNA 97.1 0.0037 8E-08 66.3 11.5 83 362-494 176-258 (311)
66 PRK13940 glutamyl-tRNA reducta 97.1 0.0015 3.2E-08 72.1 8.5 77 361-486 178-254 (414)
67 PF05237 MoeZ_MoeB: MoeZ/MoeB 97.1 0.00026 5.7E-09 60.8 2.1 44 553-603 2-48 (84)
68 PF13241 NAD_binding_7: Putati 97.1 0.00087 1.9E-08 59.5 5.2 88 361-505 4-91 (103)
69 PRK00258 aroE shikimate 5-dehy 97.1 0.0019 4E-08 67.4 8.4 36 361-396 120-155 (278)
70 TIGR01470 cysG_Nterm siroheme 97.0 0.0057 1.2E-07 61.2 10.7 94 362-505 7-100 (205)
71 PF03807 F420_oxidored: NADP o 97.0 0.0086 1.9E-07 51.6 10.4 92 366-508 1-96 (96)
72 TIGR01035 hemA glutamyl-tRNA r 96.9 0.0057 1.2E-07 67.5 11.2 77 361-487 177-253 (417)
73 COG1086 Predicted nucleoside-d 96.9 0.0039 8.5E-08 70.2 9.5 122 320-483 208-334 (588)
74 cd01078 NAD_bind_H4MPT_DH NADP 96.8 0.0096 2.1E-07 58.4 10.2 84 361-486 25-109 (194)
75 cd01065 NAD_bind_Shikimate_DH 96.7 0.0055 1.2E-07 57.3 8.0 35 362-396 17-51 (155)
76 PLN00203 glutamyl-tRNA reducta 96.7 0.0063 1.4E-07 69.0 9.1 78 362-486 264-341 (519)
77 TIGR03882 cyclo_dehyd_2 bacter 96.6 0.00073 1.6E-08 67.0 1.3 52 358-409 99-160 (193)
78 PRK06719 precorrin-2 dehydroge 96.6 0.014 3E-07 56.0 9.9 85 361-498 10-94 (157)
79 COG0569 TrkA K+ transport syst 96.6 0.018 4E-07 58.3 11.2 96 365-505 1-98 (225)
80 PF01210 NAD_Gly3P_dh_N: NAD-d 96.6 0.0046 1E-07 58.9 6.5 102 366-509 1-106 (157)
81 PRK00045 hemA glutamyl-tRNA re 96.5 0.019 4.2E-07 63.4 11.2 35 362-396 180-214 (423)
82 cd05291 HicDH_like L-2-hydroxy 96.4 0.013 2.9E-07 61.8 9.2 32 365-396 1-33 (306)
83 PLN02819 lysine-ketoglutarate 96.4 0.017 3.6E-07 70.2 10.6 98 362-504 567-677 (1042)
84 cd01080 NAD_bind_m-THF_DH_Cycl 96.3 0.013 2.9E-07 56.9 7.9 35 361-396 41-76 (168)
85 PRK05562 precorrin-2 dehydroge 96.2 0.034 7.3E-07 56.5 10.6 95 361-505 22-116 (223)
86 TIGR00518 alaDH alanine dehydr 96.2 0.039 8.4E-07 60.1 11.8 36 361-397 164-199 (370)
87 PRK14982 acyl-ACP reductase; P 96.2 0.016 3.4E-07 62.4 8.4 36 361-396 152-189 (340)
88 PRK15469 ghrA bifunctional gly 96.2 0.027 5.9E-07 59.9 9.9 92 360-507 132-227 (312)
89 TIGR02992 ectoine_eutC ectoine 96.1 0.024 5.2E-07 60.5 9.4 78 363-486 128-206 (326)
90 PLN02928 oxidoreductase family 96.1 0.018 3.8E-07 62.2 8.1 104 360-506 155-262 (347)
91 PRK08618 ornithine cyclodeamin 96.1 0.033 7.2E-07 59.4 10.1 94 363-505 126-220 (325)
92 PRK09242 tropinone reductase; 96.1 0.034 7.5E-07 56.0 9.7 91 361-483 6-97 (257)
93 cd05311 NAD_bind_2_malic_enz N 96.0 0.0079 1.7E-07 61.0 4.9 38 361-398 22-61 (226)
94 PRK05476 S-adenosyl-L-homocyst 96.0 0.032 7E-07 61.8 9.8 36 361-397 209-244 (425)
95 PRK06197 short chain dehydroge 96.0 0.027 5.9E-07 58.7 8.8 36 360-396 12-48 (306)
96 PF01113 DapB_N: Dihydrodipico 95.9 0.045 9.7E-07 50.2 8.9 99 366-510 2-102 (124)
97 PRK06141 ornithine cyclodeamin 95.9 0.037 8.1E-07 58.8 9.5 76 363-485 124-200 (314)
98 PRK07062 short chain dehydroge 95.8 0.049 1.1E-06 55.2 9.5 63 361-446 5-68 (265)
99 PRK00066 ldh L-lactate dehydro 95.8 0.046 1E-06 58.2 9.5 34 363-396 5-39 (315)
100 PRK07063 short chain dehydroge 95.8 0.067 1.5E-06 54.0 10.4 63 361-446 4-67 (260)
101 PRK00094 gpsA NAD(P)H-dependen 95.8 0.053 1.1E-06 57.0 9.9 31 366-397 3-33 (325)
102 PRK07831 short chain dehydroge 95.8 0.054 1.2E-06 54.8 9.7 36 360-396 13-50 (262)
103 PF03949 Malic_M: Malic enzyme 95.7 0.036 7.9E-07 57.3 8.2 104 360-505 21-139 (255)
104 TIGR02853 spore_dpaA dipicolin 95.7 0.036 7.9E-07 58.3 8.4 35 361-396 148-182 (287)
105 PRK05854 short chain dehydroge 95.7 0.047 1E-06 57.5 9.2 64 360-446 10-74 (313)
106 TIGR01915 npdG NADPH-dependent 95.7 0.1 2.3E-06 52.3 11.1 99 366-509 2-104 (219)
107 PRK07231 fabG 3-ketoacyl-(acyl 95.6 0.057 1.2E-06 53.7 9.1 36 361-397 2-38 (251)
108 PRK08291 ectoine utilization p 95.6 0.058 1.3E-06 57.7 9.4 78 363-486 131-209 (330)
109 PRK14106 murD UDP-N-acetylmura 95.6 0.057 1.2E-06 59.6 9.7 95 362-504 3-97 (450)
110 cd00762 NAD_bind_malic_enz NAD 95.6 0.054 1.2E-06 56.0 8.8 105 360-505 21-139 (254)
111 PRK12491 pyrroline-5-carboxyla 95.5 0.11 2.5E-06 54.1 11.3 93 364-508 2-99 (272)
112 PRK05875 short chain dehydroge 95.5 0.096 2.1E-06 53.4 10.5 34 362-396 5-39 (276)
113 PRK11880 pyrroline-5-carboxyla 95.5 0.083 1.8E-06 54.2 10.1 89 365-505 3-93 (267)
114 PTZ00082 L-lactate dehydrogena 95.5 0.069 1.5E-06 57.1 9.7 36 362-397 4-39 (321)
115 PRK12550 shikimate 5-dehydroge 95.5 0.097 2.1E-06 54.7 10.6 34 364-397 122-155 (272)
116 PRK07340 ornithine cyclodeamin 95.5 0.051 1.1E-06 57.6 8.6 77 362-486 123-200 (304)
117 cd05312 NAD_bind_1_malic_enz N 95.5 0.084 1.8E-06 55.3 10.0 104 360-505 21-138 (279)
118 PRK07634 pyrroline-5-carboxyla 95.5 0.15 3.3E-06 51.5 11.7 96 363-509 3-102 (245)
119 PTZ00117 malate dehydrogenase; 95.5 0.058 1.3E-06 57.5 8.9 36 362-397 3-38 (319)
120 cd00401 AdoHcyase S-adenosyl-L 95.4 0.083 1.8E-06 58.4 10.3 36 361-397 199-234 (413)
121 PLN02780 ketoreductase/ oxidor 95.4 0.096 2.1E-06 55.6 10.2 62 362-446 51-113 (320)
122 PRK07523 gluconate 5-dehydroge 95.4 0.11 2.3E-06 52.4 10.1 35 361-396 7-42 (255)
123 PRK09186 flagellin modificatio 95.3 0.11 2.3E-06 52.2 10.0 33 362-395 2-35 (256)
124 PF00056 Ldh_1_N: lactate/mala 95.3 0.027 5.8E-07 53.0 5.2 75 365-484 1-79 (141)
125 COG0111 SerA Phosphoglycerate 95.3 0.046 1E-06 58.5 7.5 94 360-508 138-235 (324)
126 TIGR00936 ahcY adenosylhomocys 95.3 0.099 2.1E-06 57.7 10.2 36 362-398 193-228 (406)
127 KOG0069 Glyoxylate/hydroxypyru 95.3 0.074 1.6E-06 57.1 8.8 94 360-508 158-255 (336)
128 PRK06522 2-dehydropantoate 2-r 95.2 0.11 2.4E-06 54.0 10.0 31 366-397 2-32 (304)
129 PF02737 3HCDH_N: 3-hydroxyacy 95.2 0.0064 1.4E-07 59.5 0.7 33 366-399 1-33 (180)
130 cd05290 LDH_3 A subgroup of L- 95.2 0.089 1.9E-06 55.9 9.3 31 366-396 1-32 (307)
131 TIGR00507 aroE shikimate 5-deh 95.2 0.15 3.3E-06 52.8 10.9 35 362-397 115-149 (270)
132 PRK06436 glycerate dehydrogena 95.2 0.065 1.4E-06 56.9 8.2 36 360-396 118-153 (303)
133 PRK14619 NAD(P)H-dependent gly 95.2 0.12 2.7E-06 54.5 10.2 33 364-397 4-36 (308)
134 PRK06476 pyrroline-5-carboxyla 95.2 0.12 2.6E-06 53.0 9.9 90 366-506 2-93 (258)
135 COG1648 CysG Siroheme synthase 95.2 0.036 7.7E-07 55.8 5.8 95 361-505 9-103 (210)
136 PRK06130 3-hydroxybutyryl-CoA 95.2 0.11 2.3E-06 54.8 9.7 32 365-397 5-36 (311)
137 PRK07574 formate dehydrogenase 95.1 0.079 1.7E-06 58.1 8.8 36 360-396 188-223 (385)
138 PRK06194 hypothetical protein; 95.1 0.14 2.9E-06 52.6 10.2 34 362-396 4-38 (287)
139 PRK00676 hemA glutamyl-tRNA re 95.1 0.064 1.4E-06 57.7 7.9 36 361-396 171-206 (338)
140 PRK07680 late competence prote 95.0 0.16 3.4E-06 52.6 10.4 31 366-396 2-35 (273)
141 PRK13243 glyoxylate reductase; 95.0 0.067 1.4E-06 57.4 7.8 36 360-396 146-181 (333)
142 PRK13403 ketol-acid reductoiso 95.0 0.16 3.5E-06 54.4 10.5 38 357-395 9-46 (335)
143 TIGR03589 PseB UDP-N-acetylglu 95.0 0.15 3.1E-06 54.1 10.3 36 362-397 2-39 (324)
144 cd05191 NAD_bind_amino_acid_DH 95.0 0.043 9.3E-07 46.9 5.1 36 361-396 20-55 (86)
145 PRK13394 3-hydroxybutyrate deh 95.0 0.18 3.8E-06 50.6 10.3 35 361-396 4-39 (262)
146 PRK06932 glycerate dehydrogena 94.9 0.07 1.5E-06 56.8 7.6 87 360-506 143-233 (314)
147 PRK04148 hypothetical protein; 94.9 0.24 5.2E-06 46.5 10.2 99 363-511 16-114 (134)
148 PRK08306 dipicolinate synthase 94.9 0.1 2.2E-06 55.1 8.8 36 361-397 149-184 (296)
149 PLN02688 pyrroline-5-carboxyla 94.9 0.22 4.7E-06 51.1 11.0 29 366-394 2-33 (266)
150 cd05293 LDH_1 A subgroup of L- 94.9 0.096 2.1E-06 55.8 8.5 33 364-396 3-36 (312)
151 PRK05866 short chain dehydroge 94.9 0.17 3.7E-06 52.8 10.3 36 360-396 36-72 (293)
152 PRK08217 fabG 3-ketoacyl-(acyl 94.9 0.12 2.6E-06 51.4 8.8 35 362-397 3-38 (253)
153 PRK08410 2-hydroxyacid dehydro 94.9 0.073 1.6E-06 56.6 7.6 88 360-506 141-232 (311)
154 PRK06487 glycerate dehydrogena 94.9 0.079 1.7E-06 56.5 7.7 86 360-506 144-233 (317)
155 PLN03209 translocon at the inn 94.8 0.34 7.4E-06 55.6 13.1 86 360-484 76-169 (576)
156 PRK08339 short chain dehydroge 94.8 0.18 3.9E-06 51.5 9.9 35 362-397 6-41 (263)
157 PRK08251 short chain dehydroge 94.7 0.18 3.8E-06 50.4 9.6 60 364-446 2-62 (248)
158 PF00106 adh_short: short chai 94.7 0.15 3.2E-06 47.6 8.4 91 365-486 1-92 (167)
159 PRK12429 3-hydroxybutyrate deh 94.7 0.24 5.2E-06 49.5 10.4 34 362-396 2-36 (258)
160 PRK06949 short chain dehydroge 94.7 0.16 3.4E-06 51.0 9.0 34 362-396 7-41 (258)
161 PTZ00075 Adenosylhomocysteinas 94.6 0.13 2.8E-06 57.7 9.0 36 361-397 251-286 (476)
162 PRK05867 short chain dehydroge 94.6 0.25 5.4E-06 49.7 10.4 34 362-396 7-41 (253)
163 PF02254 TrkA_N: TrkA-N domain 94.6 0.8 1.7E-05 40.6 12.5 85 367-498 1-86 (116)
164 PRK12826 3-ketoacyl-(acyl-carr 94.6 0.23 4.9E-06 49.3 9.9 36 361-397 3-39 (251)
165 PLN02602 lactate dehydrogenase 94.6 0.13 2.8E-06 55.7 8.6 32 365-396 38-70 (350)
166 PRK08293 3-hydroxybutyryl-CoA 94.6 0.081 1.7E-06 55.2 6.9 32 365-397 4-35 (287)
167 PRK07679 pyrroline-5-carboxyla 94.6 0.34 7.4E-06 50.4 11.5 25 364-388 3-27 (279)
168 PRK12480 D-lactate dehydrogena 94.6 0.15 3.3E-06 54.7 9.0 36 360-396 142-177 (330)
169 PRK08277 D-mannonate oxidoredu 94.5 0.27 5.7E-06 50.3 10.5 36 361-397 7-43 (278)
170 PRK12939 short chain dehydroge 94.5 0.31 6.6E-06 48.5 10.5 34 362-396 5-39 (250)
171 PRK00048 dihydrodipicolinate r 94.4 0.28 6E-06 50.7 10.4 33 365-397 2-36 (257)
172 PLN03139 formate dehydrogenase 94.4 0.14 3.1E-06 56.1 8.5 36 360-396 195-230 (386)
173 cd00300 LDH_like L-lactate deh 94.4 0.18 3.9E-06 53.3 9.1 74 367-484 1-76 (300)
174 PLN02427 UDP-apiose/xylose syn 94.4 0.29 6.3E-06 52.9 10.9 40 357-396 7-47 (386)
175 PF02558 ApbA: Ketopantoate re 94.4 0.14 3.1E-06 47.6 7.4 29 367-396 1-29 (151)
176 PRK14618 NAD(P)H-dependent gly 94.4 0.23 5E-06 52.8 9.9 31 365-396 5-35 (328)
177 PRK05479 ketol-acid reductoiso 94.4 0.28 6.2E-06 52.7 10.5 38 357-395 10-47 (330)
178 PRK06138 short chain dehydroge 94.3 0.32 6.8E-06 48.5 10.3 34 362-396 3-37 (252)
179 PRK07478 short chain dehydroge 94.3 0.18 3.8E-06 50.8 8.5 35 361-396 3-38 (254)
180 PRK06172 short chain dehydroge 94.3 0.22 4.8E-06 50.0 9.2 34 362-396 5-39 (253)
181 PTZ00142 6-phosphogluconate de 94.3 0.3 6.5E-06 54.9 11.0 120 365-506 2-126 (470)
182 PRK07576 short chain dehydroge 94.3 0.21 4.5E-06 50.9 9.0 36 361-397 6-42 (264)
183 PRK12384 sorbitol-6-phosphate 94.2 0.26 5.7E-06 49.6 9.6 33 364-397 2-35 (259)
184 PF03446 NAD_binding_2: NAD bi 94.2 0.088 1.9E-06 50.4 5.7 117 365-506 2-119 (163)
185 PRK06928 pyrroline-5-carboxyla 94.2 0.38 8.2E-06 50.1 10.9 94 366-509 3-101 (277)
186 PRK12921 2-dehydropantoate 2-r 94.2 0.2 4.3E-06 52.2 8.9 30 366-396 2-31 (305)
187 PRK05876 short chain dehydroge 94.2 0.26 5.7E-06 50.8 9.6 34 362-396 4-38 (275)
188 TIGR01832 kduD 2-deoxy-D-gluco 94.1 0.18 4E-06 50.3 8.2 34 362-396 3-37 (248)
189 PRK15438 erythronate-4-phospha 94.1 0.13 2.8E-06 56.2 7.6 57 333-396 91-147 (378)
190 PF02719 Polysacc_synt_2: Poly 94.1 0.091 2E-06 55.4 6.0 80 367-484 1-87 (293)
191 PRK08063 enoyl-(acyl carrier p 94.1 0.26 5.7E-06 49.1 9.1 31 362-392 2-33 (250)
192 PRK07326 short chain dehydroge 94.1 0.33 7.2E-06 48.0 9.8 34 362-396 4-38 (237)
193 PTZ00325 malate dehydrogenase; 94.0 0.17 3.6E-06 54.2 8.0 36 361-396 5-42 (321)
194 PF13460 NAD_binding_10: NADH( 94.0 0.67 1.5E-05 44.1 11.5 86 367-501 1-91 (183)
195 PRK13304 L-aspartate dehydroge 94.0 0.24 5.3E-06 51.3 9.0 33 365-397 2-36 (265)
196 TIGR00465 ilvC ketol-acid redu 94.0 0.34 7.4E-06 51.7 10.2 31 362-393 1-31 (314)
197 PLN02494 adenosylhomocysteinas 94.0 0.25 5.5E-06 55.3 9.5 36 361-397 251-286 (477)
198 PTZ00345 glycerol-3-phosphate 94.0 0.32 6.9E-06 53.0 10.1 112 363-510 10-133 (365)
199 PRK15409 bifunctional glyoxyla 94.0 0.15 3.3E-06 54.5 7.5 91 360-506 141-236 (323)
200 PRK05708 2-dehydropantoate 2-r 94.0 0.36 7.8E-06 51.0 10.3 33 364-397 2-34 (305)
201 TIGR03206 benzo_BadH 2-hydroxy 94.0 0.24 5.2E-06 49.3 8.5 34 362-396 1-35 (250)
202 PRK07502 cyclohexadienyl dehyd 94.0 0.24 5.2E-06 52.2 8.9 33 364-396 6-39 (307)
203 PRK06125 short chain dehydroge 93.9 0.4 8.7E-06 48.4 10.2 35 362-397 5-40 (259)
204 PRK09496 trkA potassium transp 93.9 0.63 1.4E-05 51.3 12.5 97 362-503 229-326 (453)
205 PRK07066 3-hydroxybutyryl-CoA 93.9 0.11 2.4E-06 55.6 6.2 33 365-398 8-40 (321)
206 PF10727 Rossmann-like: Rossma 93.8 0.14 3E-06 47.7 6.0 92 362-505 8-103 (127)
207 PF00070 Pyr_redox: Pyridine n 93.8 0.12 2.7E-06 43.2 5.2 32 366-398 1-32 (80)
208 PRK01438 murD UDP-N-acetylmura 93.8 0.31 6.6E-06 54.5 9.9 36 361-397 13-48 (480)
209 PRK08213 gluconate 5-dehydroge 93.8 0.26 5.7E-06 49.7 8.6 36 360-396 8-44 (259)
210 PF01118 Semialdhyde_dh: Semia 93.8 0.42 9.1E-06 43.4 9.0 38 472-510 64-103 (121)
211 PLN02240 UDP-glucose 4-epimera 93.8 0.36 7.9E-06 51.0 10.0 34 362-396 3-37 (352)
212 PRK09260 3-hydroxybutyryl-CoA 93.8 0.096 2.1E-06 54.7 5.4 33 365-398 2-34 (288)
213 PRK12439 NAD(P)H-dependent gly 93.7 0.32 6.9E-06 52.3 9.5 106 365-510 8-115 (341)
214 PRK06139 short chain dehydroge 93.7 0.23 5E-06 53.0 8.4 35 361-396 4-39 (330)
215 PF00670 AdoHcyase_NAD: S-aden 93.7 0.24 5.2E-06 48.0 7.6 38 360-398 19-56 (162)
216 PRK10637 cysG siroheme synthas 93.7 0.23 5.1E-06 55.5 8.7 95 361-505 9-103 (457)
217 PRK14620 NAD(P)H-dependent gly 93.7 0.53 1.2E-05 49.9 11.0 30 366-396 2-31 (326)
218 PRK05565 fabG 3-ketoacyl-(acyl 93.6 0.46 9.9E-06 47.0 9.9 35 361-395 2-37 (247)
219 PRK06500 short chain dehydroge 93.6 0.31 6.7E-06 48.5 8.6 36 361-397 3-39 (249)
220 PRK08265 short chain dehydroge 93.6 0.33 7.1E-06 49.3 8.9 36 361-397 3-39 (261)
221 PRK07819 3-hydroxybutyryl-CoA 93.6 0.058 1.3E-06 56.6 3.4 33 365-398 6-38 (286)
222 PRK07453 protochlorophyllide o 93.6 0.4 8.8E-06 50.4 9.8 34 362-396 4-38 (322)
223 PRK06181 short chain dehydroge 93.5 0.53 1.2E-05 47.5 10.3 31 365-396 2-33 (263)
224 PRK07890 short chain dehydroge 93.5 0.4 8.7E-06 48.0 9.3 34 362-396 3-37 (258)
225 PRK06940 short chain dehydroge 93.5 0.48 1E-05 48.8 10.1 31 364-396 2-32 (275)
226 COG1893 ApbA Ketopantoate redu 93.5 0.38 8.1E-06 51.2 9.4 29 365-394 1-29 (307)
227 PRK06199 ornithine cyclodeamin 93.5 0.38 8.3E-06 52.6 9.7 78 364-486 155-235 (379)
228 PRK06198 short chain dehydroge 93.5 0.29 6.2E-06 49.2 8.2 37 361-397 3-40 (260)
229 PRK11790 D-3-phosphoglycerate 93.5 0.27 5.8E-06 54.4 8.5 36 360-396 147-182 (409)
230 PRK07109 short chain dehydroge 93.4 0.32 6.9E-06 51.9 8.9 35 361-396 5-40 (334)
231 PRK06196 oxidoreductase; Provi 93.4 0.41 8.9E-06 50.2 9.6 35 361-396 23-58 (315)
232 PRK05872 short chain dehydroge 93.4 0.3 6.5E-06 50.8 8.5 36 361-397 6-42 (296)
233 PRK08229 2-dehydropantoate 2-r 93.4 0.36 7.8E-06 51.3 9.3 32 365-397 3-34 (341)
234 PRK06914 short chain dehydroge 93.4 0.38 8.1E-06 49.1 9.0 34 363-397 2-36 (280)
235 PRK05717 oxidoreductase; Valid 93.4 0.38 8.2E-06 48.5 8.9 36 361-397 7-43 (255)
236 PLN00106 malate dehydrogenase 93.4 0.2 4.3E-06 53.7 7.2 36 363-398 17-54 (323)
237 PRK08589 short chain dehydroge 93.4 0.38 8.3E-06 49.2 9.0 35 361-396 3-38 (272)
238 PF02826 2-Hacid_dh_C: D-isome 93.3 0.13 2.9E-06 49.9 5.3 93 359-506 31-127 (178)
239 PRK12937 short chain dehydroge 93.3 0.56 1.2E-05 46.5 9.9 30 362-391 3-33 (245)
240 PRK08085 gluconate 5-dehydroge 93.3 0.58 1.3E-05 47.0 10.1 35 361-396 6-41 (254)
241 PLN02253 xanthoxin dehydrogena 93.3 0.6 1.3E-05 47.7 10.3 36 360-396 14-50 (280)
242 PRK13302 putative L-aspartate 93.3 0.46 1E-05 49.5 9.6 35 363-397 5-41 (271)
243 cd05292 LDH_2 A subgroup of L- 93.3 0.33 7.1E-06 51.5 8.6 32 366-397 2-34 (308)
244 PLN02306 hydroxypyruvate reduc 93.3 0.27 5.8E-06 54.0 8.1 106 360-506 161-272 (386)
245 TIGR00872 gnd_rel 6-phosphoglu 93.2 0.51 1.1E-05 49.7 9.9 32 366-398 2-33 (298)
246 PRK06057 short chain dehydroge 93.2 0.32 7E-06 49.0 8.1 36 361-397 4-40 (255)
247 COG0300 DltE Short-chain dehyd 93.2 0.63 1.4E-05 48.5 10.3 61 362-446 4-65 (265)
248 PRK06128 oxidoreductase; Provi 93.2 0.44 9.5E-06 49.6 9.3 35 360-395 51-86 (300)
249 PRK07774 short chain dehydroge 93.1 0.44 9.6E-06 47.5 8.9 36 361-397 3-39 (250)
250 TIGR03376 glycerol3P_DH glycer 93.1 0.58 1.3E-05 50.6 10.2 111 366-510 1-120 (342)
251 PRK08303 short chain dehydroge 93.0 0.52 1.1E-05 49.6 9.6 36 361-397 5-41 (305)
252 PRK09496 trkA potassium transp 93.0 0.83 1.8E-05 50.4 11.5 87 366-498 2-89 (453)
253 PRK06129 3-hydroxyacyl-CoA deh 93.0 0.28 6.1E-06 51.8 7.5 33 365-398 3-35 (308)
254 COG2085 Predicted dinucleotide 92.9 0.74 1.6E-05 46.4 9.9 93 365-508 2-95 (211)
255 PRK05855 short chain dehydroge 92.9 0.49 1.1E-05 53.2 9.8 36 360-396 311-347 (582)
256 PRK05653 fabG 3-ketoacyl-(acyl 92.9 0.52 1.1E-05 46.4 8.9 35 362-397 3-38 (246)
257 PRK05786 fabG 3-ketoacyl-(acyl 92.9 0.58 1.3E-05 46.3 9.3 34 362-396 3-37 (238)
258 cd01075 NAD_bind_Leu_Phe_Val_D 92.8 0.15 3.3E-06 50.7 5.0 37 360-397 24-60 (200)
259 PTZ00431 pyrroline carboxylate 92.8 0.64 1.4E-05 47.9 9.7 34 363-396 2-38 (260)
260 PRK12828 short chain dehydroge 92.8 0.62 1.4E-05 45.7 9.3 36 361-397 4-40 (239)
261 PRK07102 short chain dehydroge 92.8 0.73 1.6E-05 46.0 9.8 32 365-397 2-34 (243)
262 KOG4169 15-hydroxyprostaglandi 92.8 0.25 5.4E-06 50.4 6.3 88 362-482 3-91 (261)
263 cd01337 MDH_glyoxysomal_mitoch 92.7 0.28 6.1E-06 52.2 7.1 32 366-397 2-35 (310)
264 PRK07097 gluconate 5-dehydroge 92.7 0.68 1.5E-05 46.9 9.8 35 361-396 7-42 (265)
265 PRK07067 sorbitol dehydrogenas 92.7 0.49 1.1E-05 47.6 8.6 36 362-398 4-40 (257)
266 PRK06046 alanine dehydrogenase 92.7 0.52 1.1E-05 50.4 9.2 76 364-486 129-205 (326)
267 TIGR01763 MalateDH_bact malate 92.7 0.51 1.1E-05 50.1 9.0 32 365-396 2-33 (305)
268 PRK07074 short chain dehydroge 92.7 0.75 1.6E-05 46.2 9.9 32 364-396 2-34 (257)
269 PLN02989 cinnamyl-alcohol dehy 92.7 0.74 1.6E-05 48.2 10.2 32 364-396 5-37 (325)
270 PRK08267 short chain dehydroge 92.6 0.57 1.2E-05 47.2 9.0 31 365-396 2-33 (260)
271 PRK07666 fabG 3-ketoacyl-(acyl 92.6 0.96 2.1E-05 44.9 10.5 36 361-397 4-40 (239)
272 PRK12829 short chain dehydroge 92.6 0.65 1.4E-05 46.6 9.3 35 361-396 8-43 (264)
273 PRK08416 7-alpha-hydroxysteroi 92.6 0.46 1E-05 48.1 8.2 33 361-394 5-38 (260)
274 TIGR01757 Malate-DH_plant mala 92.5 0.53 1.2E-05 51.7 9.1 79 364-484 44-130 (387)
275 PRK08594 enoyl-(acyl carrier p 92.5 0.47 1E-05 48.3 8.2 34 362-396 5-41 (257)
276 PRK12938 acetyacetyl-CoA reduc 92.5 0.81 1.7E-05 45.6 9.8 31 362-392 1-32 (246)
277 PF02423 OCD_Mu_crystall: Orni 92.5 0.43 9.3E-06 50.8 8.2 76 364-486 128-204 (313)
278 PLN02852 ferredoxin-NADP+ redu 92.5 0.56 1.2E-05 53.1 9.5 43 363-407 25-69 (491)
279 PRK06841 short chain dehydroge 92.5 0.65 1.4E-05 46.5 9.1 35 362-397 13-48 (255)
280 PRK06935 2-deoxy-D-gluconate 3 92.5 0.6 1.3E-05 47.1 8.9 36 361-397 12-48 (258)
281 cd01076 NAD_bind_1_Glu_DH NAD( 92.5 0.22 4.8E-06 50.7 5.7 38 360-397 27-64 (227)
282 PRK07531 bifunctional 3-hydrox 92.5 0.81 1.8E-05 51.8 10.8 32 365-397 5-36 (495)
283 PRK12825 fabG 3-ketoacyl-(acyl 92.5 0.59 1.3E-05 46.0 8.7 31 362-392 4-35 (249)
284 PRK07035 short chain dehydroge 92.5 0.56 1.2E-05 47.0 8.6 36 361-397 5-41 (252)
285 PRK12748 3-ketoacyl-(acyl-carr 92.5 0.67 1.5E-05 46.7 9.2 37 361-398 2-41 (256)
286 PRK07806 short chain dehydroge 92.5 0.85 1.8E-05 45.5 9.9 35 361-396 3-38 (248)
287 PRK06079 enoyl-(acyl carrier p 92.5 0.47 1E-05 48.0 8.1 35 361-396 4-41 (252)
288 PRK06124 gluconate 5-dehydroge 92.5 0.6 1.3E-05 46.9 8.8 36 361-397 8-44 (256)
289 PRK06407 ornithine cyclodeamin 92.4 0.62 1.3E-05 49.4 9.2 77 364-486 117-194 (301)
290 cd00650 LDH_MDH_like NAD-depen 92.4 0.41 8.8E-06 49.4 7.7 32 367-398 1-36 (263)
291 PRK12859 3-ketoacyl-(acyl-carr 92.4 0.74 1.6E-05 46.6 9.4 34 361-395 3-39 (256)
292 cd02201 FtsZ_type1 FtsZ is a G 92.3 1 2.2E-05 47.8 10.7 107 365-505 1-120 (304)
293 PRK08278 short chain dehydroge 92.3 1 2.2E-05 46.2 10.5 35 362-397 4-39 (273)
294 PRK12746 short chain dehydroge 92.3 0.78 1.7E-05 45.9 9.4 30 361-390 3-33 (254)
295 PRK06545 prephenate dehydrogen 92.3 0.81 1.8E-05 49.5 10.1 32 365-397 1-32 (359)
296 TIGR02622 CDP_4_6_dhtase CDP-g 92.3 0.65 1.4E-05 49.4 9.2 35 362-397 2-37 (349)
297 PF01408 GFO_IDH_MocA: Oxidore 92.2 0.67 1.5E-05 41.2 7.9 85 366-503 2-90 (120)
298 PRK09599 6-phosphogluconate de 92.2 0.47 1E-05 49.9 7.9 115 366-505 2-118 (301)
299 PRK09880 L-idonate 5-dehydroge 92.2 1.2 2.6E-05 47.2 11.2 34 363-396 169-202 (343)
300 PRK13529 malate dehydrogenase; 92.2 0.82 1.8E-05 52.3 10.2 111 360-505 291-415 (563)
301 TIGR03325 BphB_TodD cis-2,3-di 92.2 0.55 1.2E-05 47.6 8.2 35 362-397 3-38 (262)
302 PRK07792 fabG 3-ketoacyl-(acyl 92.2 0.76 1.6E-05 48.2 9.5 36 360-396 8-44 (306)
303 TIGR01772 MDH_euk_gproteo mala 92.1 0.3 6.4E-06 52.1 6.4 33 366-398 1-35 (312)
304 PRK07814 short chain dehydroge 92.1 0.72 1.6E-05 46.8 8.9 35 362-397 8-43 (263)
305 PRK12769 putative oxidoreducta 92.1 0.62 1.3E-05 54.4 9.5 35 362-397 325-359 (654)
306 COG1052 LdhA Lactate dehydroge 92.0 0.38 8.3E-06 51.6 7.1 93 360-508 142-238 (324)
307 PRK07825 short chain dehydroge 92.0 0.47 1E-05 48.3 7.5 34 362-396 3-37 (273)
308 COG1063 Tdh Threonine dehydrog 92.0 0.69 1.5E-05 49.8 9.1 97 366-505 171-269 (350)
309 TIGR02632 RhaD_aldol-ADH rhamn 92.0 0.9 2E-05 53.4 10.7 34 362-396 412-446 (676)
310 PRK08703 short chain dehydroge 92.0 0.74 1.6E-05 45.8 8.7 35 362-397 4-39 (239)
311 PRK11559 garR tartronate semia 91.9 0.76 1.6E-05 47.9 9.1 32 365-397 3-34 (296)
312 PRK08324 short chain dehydroge 91.9 0.76 1.7E-05 53.9 10.0 34 362-396 420-454 (681)
313 PRK08374 homoserine dehydrogen 91.9 0.8 1.7E-05 49.3 9.4 33 365-397 3-45 (336)
314 PRK07024 short chain dehydroge 91.9 0.88 1.9E-05 45.9 9.3 33 364-397 2-35 (257)
315 KOG1201 Hydroxysteroid 17-beta 91.9 0.68 1.5E-05 48.9 8.5 92 358-454 32-131 (300)
316 PRK07984 enoyl-(acyl carrier p 91.9 0.63 1.4E-05 47.8 8.2 36 361-397 3-41 (262)
317 TIGR01850 argC N-acetyl-gamma- 91.8 0.53 1.2E-05 50.8 8.0 101 365-510 1-105 (346)
318 PRK12744 short chain dehydroge 91.8 0.85 1.8E-05 45.9 9.1 33 361-393 5-38 (257)
319 PRK09072 short chain dehydroge 91.8 0.81 1.7E-05 46.3 8.9 35 362-397 3-38 (263)
320 cd01338 MDH_choloroplast_like 91.8 0.33 7.2E-06 52.0 6.3 33 364-396 2-41 (322)
321 TIGR00065 ftsZ cell division p 91.8 1 2.2E-05 48.8 10.0 109 363-505 16-137 (349)
322 PRK07454 short chain dehydroge 91.7 1.2 2.6E-05 44.2 10.0 32 364-396 6-38 (241)
323 PRK06270 homoserine dehydrogen 91.7 1 2.2E-05 48.5 10.1 22 365-386 3-24 (341)
324 cd05211 NAD_bind_Glu_Leu_Phe_V 91.7 0.24 5.2E-06 50.1 4.9 39 360-398 19-57 (217)
325 cd01339 LDH-like_MDH L-lactate 91.7 0.78 1.7E-05 48.3 8.9 31 367-397 1-31 (300)
326 PLN02896 cinnamyl-alcohol dehy 91.7 1.1 2.4E-05 47.7 10.2 34 362-396 8-42 (353)
327 PRK12823 benD 1,6-dihydroxycyc 91.7 0.85 1.9E-05 45.9 8.9 37 360-397 4-41 (260)
328 PRK03562 glutathione-regulated 91.6 1.2 2.7E-05 51.8 11.2 89 364-499 400-489 (621)
329 TIGR01759 MalateDH-SF1 malate 91.6 0.53 1.1E-05 50.5 7.6 32 365-396 4-42 (323)
330 PLN02662 cinnamyl-alcohol dehy 91.6 1 2.2E-05 46.8 9.6 33 364-397 4-37 (322)
331 TIGR00036 dapB dihydrodipicoli 91.6 1.1 2.4E-05 46.6 9.7 31 365-395 2-34 (266)
332 PRK02705 murD UDP-N-acetylmura 91.6 1.3 2.9E-05 49.0 11.0 33 365-398 1-33 (459)
333 PTZ00188 adrenodoxin reductase 91.5 0.88 1.9E-05 51.5 9.5 97 363-485 38-137 (506)
334 PRK12779 putative bifunctional 91.5 0.65 1.4E-05 56.6 9.1 96 363-485 305-403 (944)
335 PRK15181 Vi polysaccharide bio 91.5 1 2.2E-05 48.0 9.7 36 361-397 12-48 (348)
336 PLN03129 NADP-dependent malic 91.4 0.94 2E-05 52.0 9.7 40 360-399 317-367 (581)
337 PRK07985 oxidoreductase; Provi 91.4 0.92 2E-05 47.2 9.1 34 361-395 46-80 (294)
338 KOG0024 Sorbitol dehydrogenase 91.4 1.1 2.3E-05 48.0 9.4 34 363-396 169-202 (354)
339 PRK06720 hypothetical protein; 91.4 0.93 2E-05 43.9 8.4 35 362-397 14-49 (169)
340 PRK07060 short chain dehydroge 91.4 1 2.2E-05 44.7 9.0 34 362-396 7-41 (245)
341 TIGR02371 ala_DH_arch alanine 91.4 0.96 2.1E-05 48.4 9.3 76 364-486 128-204 (325)
342 PRK07589 ornithine cyclodeamin 91.3 0.95 2.1E-05 49.0 9.2 76 364-486 129-205 (346)
343 PF05368 NmrA: NmrA-like famil 91.2 2.2 4.8E-05 42.4 11.3 92 367-503 1-98 (233)
344 PF02629 CoA_binding: CoA bind 91.2 1.8 4E-05 37.7 9.4 91 363-506 2-94 (96)
345 COG1064 AdhP Zn-dependent alco 91.2 2.2 4.7E-05 46.1 11.6 93 364-505 167-259 (339)
346 PRK08655 prephenate dehydrogen 91.2 1.3 2.7E-05 49.5 10.3 30 366-396 2-32 (437)
347 PRK06200 2,3-dihydroxy-2,3-dih 91.2 0.75 1.6E-05 46.5 7.9 35 362-397 4-39 (263)
348 COG0281 SfcA Malic enzyme [Ene 91.2 0.23 5E-06 54.5 4.3 41 360-400 195-237 (432)
349 PRK11908 NAD-dependent epimera 91.2 2.6 5.7E-05 44.7 12.4 32 365-396 2-34 (347)
350 COG1712 Predicted dinucleotide 91.1 1 2.2E-05 45.9 8.5 32 366-397 2-35 (255)
351 PRK06113 7-alpha-hydroxysteroi 91.1 1.1 2.4E-05 45.1 9.0 34 361-395 8-42 (255)
352 PRK12862 malic enzyme; Reviewe 91.1 0.71 1.5E-05 54.9 8.6 40 360-399 189-230 (763)
353 PRK07889 enoyl-(acyl carrier p 91.1 0.57 1.2E-05 47.6 7.0 36 361-397 4-42 (256)
354 TIGR02415 23BDH acetoin reduct 91.1 1.4 3E-05 44.1 9.6 31 365-396 1-32 (254)
355 PLN02520 bifunctional 3-dehydr 91.1 0.26 5.7E-06 56.2 4.9 34 362-396 377-410 (529)
356 PRK08945 putative oxoacyl-(acy 91.1 1 2.2E-05 45.0 8.7 38 360-398 8-46 (247)
357 TIGR01289 LPOR light-dependent 91.0 1.1 2.3E-05 47.3 9.1 35 363-397 2-37 (314)
358 PRK09291 short chain dehydroge 91.0 1.8 3.9E-05 43.3 10.4 31 364-395 2-33 (257)
359 PRK07201 short chain dehydroge 91.0 1.2 2.6E-05 51.5 10.3 36 360-396 367-403 (657)
360 COG0240 GpsA Glycerol-3-phosph 90.9 0.69 1.5E-05 49.6 7.5 106 365-510 2-109 (329)
361 PLN02650 dihydroflavonol-4-red 90.9 1.4 3.1E-05 46.7 10.1 33 363-396 4-37 (351)
362 TIGR01505 tartro_sem_red 2-hyd 90.9 0.63 1.4E-05 48.5 7.2 31 366-397 1-31 (291)
363 PRK12367 short chain dehydroge 90.9 0.39 8.3E-06 49.0 5.5 41 357-398 7-48 (245)
364 KOG1205 Predicted dehydrogenas 90.8 1 2.2E-05 47.4 8.7 93 357-481 5-98 (282)
365 PRK06114 short chain dehydroge 90.8 1.6 3.4E-05 44.0 9.9 35 361-396 5-40 (254)
366 PRK07904 short chain dehydroge 90.8 2 4.3E-05 43.6 10.6 33 364-396 8-41 (253)
367 TIGR01318 gltD_gamma_fam gluta 90.8 1 2.2E-05 50.4 9.3 34 363-397 140-173 (467)
368 PRK10538 malonic semialdehyde 90.8 1.6 3.4E-05 43.8 9.8 30 366-396 2-32 (248)
369 PRK08226 short chain dehydroge 90.8 1.3 2.8E-05 44.7 9.2 36 361-397 3-39 (263)
370 PRK07791 short chain dehydroge 90.8 1.2 2.6E-05 46.2 9.1 35 361-396 3-38 (286)
371 PRK07677 short chain dehydroge 90.8 1.1 2.5E-05 44.9 8.7 33 364-397 1-34 (252)
372 PRK07370 enoyl-(acyl carrier p 90.7 1.1 2.4E-05 45.5 8.7 33 362-395 4-39 (258)
373 PRK06523 short chain dehydroge 90.6 0.79 1.7E-05 46.1 7.4 77 361-443 6-84 (260)
374 PRK08628 short chain dehydroge 90.6 0.99 2.2E-05 45.3 8.1 35 361-396 4-39 (258)
375 PRK12809 putative oxidoreducta 90.6 1.2 2.7E-05 51.9 9.9 35 363-398 309-343 (639)
376 PRK08340 glucose-1-dehydrogena 90.5 1 2.2E-05 45.5 8.2 31 366-397 2-33 (259)
377 PRK08862 short chain dehydroge 90.5 1 2.2E-05 45.2 8.1 35 362-397 3-38 (227)
378 TIGR01373 soxB sarcosine oxida 90.5 0.43 9.4E-06 51.8 5.8 44 363-406 29-73 (407)
379 PRK12827 short chain dehydroge 90.5 1.3 2.7E-05 44.0 8.6 34 362-396 4-38 (249)
380 PRK02472 murD UDP-N-acetylmura 90.5 1.1 2.3E-05 49.5 8.9 35 362-397 3-37 (447)
381 PRK12771 putative glutamate sy 90.4 1.1 2.3E-05 51.5 9.1 36 362-398 135-170 (564)
382 PRK13018 cell division protein 90.4 2.1 4.5E-05 47.0 10.8 39 360-398 24-64 (378)
383 PLN02657 3,8-divinyl protochlo 90.3 1.3 2.7E-05 48.5 9.2 34 362-396 58-92 (390)
384 PRK07775 short chain dehydroge 90.3 2.3 4.9E-05 43.5 10.6 34 362-396 8-42 (274)
385 PRK05650 short chain dehydroge 90.3 1.8 4E-05 43.9 9.9 31 365-396 1-32 (270)
386 TIGR00561 pntA NAD(P) transhyd 90.3 0.95 2.1E-05 51.5 8.3 35 361-396 161-195 (511)
387 TIGR03026 NDP-sugDHase nucleot 90.3 1.9 4.1E-05 47.4 10.6 40 366-406 2-41 (411)
388 TIGR03451 mycoS_dep_FDH mycoth 90.2 2.3 5.1E-05 45.3 11.0 34 363-396 176-209 (358)
389 COG0345 ProC Pyrroline-5-carbo 90.2 2 4.3E-05 44.9 10.1 93 365-509 2-98 (266)
390 PRK12935 acetoacetyl-CoA reduc 90.2 2 4.3E-05 42.8 9.8 30 362-391 4-34 (247)
391 PRK05557 fabG 3-ketoacyl-(acyl 90.2 2.2 4.7E-05 42.0 10.0 32 362-393 3-35 (248)
392 PLN02214 cinnamoyl-CoA reducta 90.1 1.5 3.3E-05 46.7 9.4 35 361-396 7-42 (342)
393 PRK12742 oxidoreductase; Provi 90.0 1.5 3.2E-05 43.3 8.7 33 361-394 3-36 (237)
394 PRK06823 ornithine cyclodeamin 89.9 1.4 3.1E-05 47.0 9.0 76 364-486 128-204 (315)
395 PLN02653 GDP-mannose 4,6-dehyd 89.9 1.3 2.8E-05 46.8 8.7 35 362-397 4-39 (340)
396 PRK11730 fadB multifunctional 89.8 0.13 2.9E-06 60.6 1.2 33 365-398 314-346 (715)
397 PRK08936 glucose-1-dehydrogena 89.7 1.6 3.5E-05 44.0 8.9 34 361-395 4-38 (261)
398 PRK08642 fabG 3-ketoacyl-(acyl 89.7 1.8 3.9E-05 43.1 9.1 30 362-391 3-33 (253)
399 PLN02986 cinnamyl-alcohol dehy 89.7 1.9 4.1E-05 45.1 9.6 29 363-392 4-33 (322)
400 PRK09135 pteridine reductase; 89.7 1.9 4.2E-05 42.6 9.2 33 363-396 5-38 (249)
401 PRK06223 malate dehydrogenase; 89.7 0.46 9.9E-06 50.0 5.0 32 365-396 3-34 (307)
402 PRK05884 short chain dehydroge 89.7 1.4 3E-05 43.8 8.3 31 366-397 2-33 (223)
403 PRK06505 enoyl-(acyl carrier p 89.6 1.4 3.1E-05 45.2 8.5 34 362-396 5-41 (271)
404 PRK07533 enoyl-(acyl carrier p 89.6 1.6 3.4E-05 44.4 8.7 37 360-397 6-45 (258)
405 PRK05442 malate dehydrogenase; 89.6 0.77 1.7E-05 49.3 6.7 33 364-396 4-43 (326)
406 CHL00194 ycf39 Ycf39; Provisio 89.5 3.2 6.9E-05 43.6 11.2 30 366-396 2-32 (317)
407 PRK09330 cell division protein 89.5 2.4 5.3E-05 46.6 10.5 112 360-505 9-133 (384)
408 PRK08690 enoyl-(acyl carrier p 89.5 1.5 3.2E-05 44.7 8.5 35 360-395 2-39 (261)
409 TIGR01963 PHB_DH 3-hydroxybuty 89.5 2.5 5.4E-05 42.0 10.0 32 365-397 2-34 (255)
410 PRK06035 3-hydroxyacyl-CoA deh 89.5 0.47 1E-05 49.5 4.9 33 365-398 4-36 (291)
411 PRK10217 dTDP-glucose 4,6-dehy 89.5 1.5 3.2E-05 46.6 8.7 32 365-396 2-34 (355)
412 PRK12743 oxidoreductase; Provi 89.5 1.6 3.4E-05 44.1 8.5 28 364-391 2-30 (256)
413 TIGR01181 dTDP_gluc_dehyt dTDP 89.3 1.2 2.6E-05 45.7 7.7 31 366-396 1-33 (317)
414 PRK14192 bifunctional 5,10-met 89.3 0.4 8.7E-06 50.5 4.2 35 361-396 156-191 (283)
415 PRK05599 hypothetical protein; 89.3 1.7 3.8E-05 43.7 8.7 29 366-396 2-31 (246)
416 TIGR01316 gltA glutamate synth 89.3 2.3 5E-05 47.4 10.4 35 362-397 131-165 (449)
417 PRK11259 solA N-methyltryptoph 89.2 0.49 1.1E-05 50.5 4.9 35 364-399 3-37 (376)
418 PLN00198 anthocyanidin reducta 89.2 2.2 4.8E-05 45.0 9.8 35 362-397 7-42 (338)
419 TIGR02437 FadB fatty oxidation 89.2 0.17 3.7E-06 59.8 1.4 33 365-398 314-346 (714)
420 PF01266 DAO: FAD dependent ox 89.1 0.59 1.3E-05 48.6 5.3 35 366-401 1-35 (358)
421 PRK06701 short chain dehydroge 89.1 1.6 3.4E-05 45.4 8.5 36 360-396 42-78 (290)
422 PRK09730 putative NAD(P)-bindi 89.1 2.3 5E-05 42.1 9.3 26 365-390 2-28 (247)
423 PRK08264 short chain dehydroge 89.1 0.56 1.2E-05 46.4 4.9 37 362-398 4-41 (238)
424 PRK06947 glucose-1-dehydrogena 89.0 1.7 3.6E-05 43.3 8.3 27 365-391 3-30 (248)
425 PRK00141 murD UDP-N-acetylmura 88.9 0.5 1.1E-05 53.1 4.8 38 359-397 10-47 (473)
426 PRK06077 fabG 3-ketoacyl-(acyl 88.9 1.7 3.8E-05 43.2 8.3 31 362-392 4-35 (252)
427 PLN00141 Tic62-NAD(P)-related 88.9 5.4 0.00012 40.3 12.0 34 359-393 12-46 (251)
428 PRK12409 D-amino acid dehydrog 88.9 0.53 1.2E-05 51.2 4.9 33 365-398 2-34 (410)
429 PLN02968 Probable N-acetyl-gam 88.9 1.3 2.7E-05 48.7 7.8 96 363-505 37-133 (381)
430 COG0665 DadA Glycine/D-amino a 88.9 0.62 1.3E-05 49.8 5.3 43 363-406 3-45 (387)
431 PRK07069 short chain dehydroge 88.9 2.4 5.2E-05 42.1 9.3 31 366-397 1-32 (251)
432 PRK12936 3-ketoacyl-(acyl-carr 88.8 2 4.4E-05 42.4 8.7 34 362-396 4-38 (245)
433 TIGR03466 HpnA hopanoid-associ 88.8 1.6 3.6E-05 45.1 8.3 31 366-397 2-33 (328)
434 PRK06182 short chain dehydroge 88.7 1.8 4E-05 44.0 8.5 33 363-396 2-35 (273)
435 TIGR00873 gnd 6-phosphoglucona 88.7 3 6.6E-05 47.0 10.8 118 366-506 1-123 (467)
436 PLN02740 Alcohol dehydrogenase 88.7 3.8 8.2E-05 44.3 11.3 34 363-396 198-231 (381)
437 PRK08415 enoyl-(acyl carrier p 88.7 1.9 4.2E-05 44.5 8.7 35 362-397 3-40 (274)
438 PRK05225 ketol-acid reductoiso 88.7 1.4 3E-05 49.4 7.8 34 358-391 30-63 (487)
439 TIGR01472 gmd GDP-mannose 4,6- 88.7 2.1 4.6E-05 45.3 9.2 32 365-397 1-33 (343)
440 PRK06249 2-dehydropantoate 2-r 88.6 0.58 1.3E-05 49.5 4.9 34 364-398 5-38 (313)
441 PRK08643 acetoin reductase; Va 88.6 2.6 5.6E-05 42.3 9.4 32 364-396 2-34 (256)
442 cd08281 liver_ADH_like1 Zinc-d 88.6 3.4 7.4E-05 44.3 10.9 34 363-396 191-224 (371)
443 PF03447 NAD_binding_3: Homose 88.6 0.85 1.9E-05 40.9 5.3 38 467-505 50-89 (117)
444 PRK03659 glutathione-regulated 88.5 2.2 4.8E-05 49.5 9.9 89 364-499 400-489 (601)
445 cd08230 glucose_DH Glucose deh 88.5 3.8 8.2E-05 43.6 11.0 33 363-396 172-204 (355)
446 COG1250 FadB 3-hydroxyacyl-CoA 88.4 0.26 5.6E-06 52.5 2.0 33 364-397 3-35 (307)
447 cd08239 THR_DH_like L-threonin 88.4 5 0.00011 42.1 11.8 34 363-396 163-196 (339)
448 TIGR01771 L-LDH-NAD L-lactate 88.3 1.3 2.9E-05 46.8 7.3 28 369-396 1-29 (299)
449 PRK08993 2-deoxy-D-gluconate 3 88.3 2.2 4.7E-05 43.0 8.6 35 361-396 7-42 (253)
450 PRK12481 2-deoxy-D-gluconate 3 88.2 2 4.3E-05 43.4 8.3 34 362-396 6-40 (251)
451 PRK13303 L-aspartate dehydroge 88.2 2.8 6E-05 43.5 9.5 32 365-396 2-34 (265)
452 PRK09310 aroDE bifunctional 3- 88.1 0.65 1.4E-05 52.4 5.1 34 362-396 330-363 (477)
453 COG0039 Mdh Malate/lactate deh 88.1 0.59 1.3E-05 49.9 4.4 33 365-397 1-34 (313)
454 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.1 0.21 4.6E-06 56.6 1.2 33 364-397 5-37 (503)
455 PRK15461 NADH-dependent gamma- 88.1 1.9 4.1E-05 45.3 8.3 32 365-397 2-33 (296)
456 TIGR01500 sepiapter_red sepiap 88.0 2.9 6.3E-05 42.2 9.3 58 366-446 2-64 (256)
457 PF08659 KR: KR domain; Inter 87.9 3.9 8.5E-05 39.6 9.8 60 366-446 2-62 (181)
458 cd05296 GH4_P_beta_glucosidase 87.9 2.3 5.1E-05 47.2 9.2 95 366-500 2-103 (419)
459 PRK07530 3-hydroxybutyryl-CoA 87.8 0.73 1.6E-05 48.1 5.0 33 364-397 4-36 (292)
460 PRK07832 short chain dehydroge 87.8 2.1 4.5E-05 43.7 8.2 31 365-396 1-32 (272)
461 PRK07424 bifunctional sterol d 87.7 2.6 5.7E-05 46.6 9.4 35 361-396 175-210 (406)
462 PRK05086 malate dehydrogenase; 87.7 1.3 2.8E-05 47.2 6.8 33 365-397 1-36 (312)
463 PRK15076 alpha-galactosidase; 87.7 2 4.3E-05 47.9 8.5 94 365-501 2-105 (431)
464 PRK05808 3-hydroxybutyryl-CoA 87.7 0.7 1.5E-05 48.0 4.7 32 365-397 4-35 (282)
465 PRK06603 enoyl-(acyl carrier p 87.7 2.7 5.8E-05 42.8 8.9 37 360-397 4-43 (260)
466 PRK10084 dTDP-glucose 4,6 dehy 87.6 2 4.3E-05 45.5 8.2 31 366-396 2-33 (352)
467 PLN02350 phosphogluconate dehy 87.5 3.5 7.6E-05 46.8 10.4 120 365-506 7-132 (493)
468 PRK12745 3-ketoacyl-(acyl-carr 87.5 2.7 5.8E-05 42.0 8.6 32 364-396 2-34 (256)
469 PRK12490 6-phosphogluconate de 87.5 1.6 3.5E-05 45.9 7.3 32 366-398 2-33 (299)
470 PRK12810 gltD glutamate syntha 87.4 2.5 5.5E-05 47.3 9.3 34 363-397 142-175 (471)
471 cd05297 GH4_alpha_glucosidase_ 87.4 2.2 4.9E-05 47.3 8.7 33 365-397 1-38 (423)
472 PRK08159 enoyl-(acyl carrier p 87.4 2.3 5E-05 43.8 8.3 36 360-396 6-44 (272)
473 PRK04207 glyceraldehyde-3-phos 87.3 4 8.6E-05 44.1 10.3 37 468-505 72-108 (341)
474 PLN02545 3-hydroxybutyryl-CoA 87.2 0.82 1.8E-05 47.8 4.9 32 365-397 5-36 (295)
475 COG2227 UbiG 2-polyprenyl-3-me 87.2 2 4.3E-05 44.2 7.4 59 318-396 31-89 (243)
476 TIGR01377 soxA_mon sarcosine o 86.9 0.83 1.8E-05 48.8 4.9 33 366-399 2-34 (380)
477 PRK10669 putative cation:proto 86.9 3.2 7E-05 47.5 9.9 34 364-398 417-450 (558)
478 PRK12775 putative trifunctiona 86.9 2.5 5.4E-05 52.1 9.4 34 363-397 429-462 (1006)
479 PRK00811 spermidine synthase; 86.8 2.2 4.8E-05 44.7 7.9 35 363-398 76-110 (283)
480 PRK08818 prephenate dehydrogen 86.8 3.2 7E-05 45.4 9.3 35 362-396 2-37 (370)
481 PRK06567 putative bifunctional 86.7 3.6 7.7E-05 50.3 10.3 41 362-403 381-421 (1028)
482 PRK02318 mannitol-1-phosphate 86.7 0.46 1E-05 51.8 2.8 45 366-411 2-47 (381)
483 PRK12814 putative NADPH-depend 86.7 3.1 6.8E-05 48.7 9.8 34 363-397 192-225 (652)
484 PRK09134 short chain dehydroge 86.6 3.9 8.5E-05 41.1 9.4 30 363-392 8-38 (258)
485 PRK09987 dTDP-4-dehydrorhamnos 86.6 2.9 6.2E-05 43.7 8.6 30 366-397 2-32 (299)
486 PRK00257 erythronate-4-phospha 86.5 0.88 1.9E-05 49.9 4.8 57 333-396 91-147 (381)
487 PRK07856 short chain dehydroge 86.5 2 4.3E-05 43.1 7.1 77 362-443 4-82 (252)
488 PRK10537 voltage-gated potassi 86.4 2.4 5.2E-05 46.7 8.1 90 362-500 238-328 (393)
489 PRK08220 2,3-dihydroxybenzoate 86.3 4.1 9E-05 40.5 9.3 79 362-446 6-86 (252)
490 TIGR02441 fa_ox_alpha_mit fatt 86.2 0.25 5.4E-06 58.6 0.4 33 365-398 336-368 (737)
491 PRK13301 putative L-aspartate 86.1 3.5 7.6E-05 43.1 8.7 117 364-510 2-128 (267)
492 PRK00436 argC N-acetyl-gamma-g 86.0 3.6 7.8E-05 44.4 9.1 38 471-509 65-104 (343)
493 PRK12778 putative bifunctional 85.9 3.5 7.6E-05 49.1 9.8 35 362-397 429-463 (752)
494 PRK06179 short chain dehydroge 85.9 4.8 0.0001 40.7 9.6 76 364-444 4-81 (270)
495 PRK06463 fabG 3-ketoacyl-(acyl 85.9 2.3 4.9E-05 42.8 7.2 35 361-396 4-39 (255)
496 KOG1208 Dehydrogenases with di 85.9 3.3 7.1E-05 44.3 8.6 65 359-446 30-95 (314)
497 PF01494 FAD_binding_3: FAD bi 85.8 0.96 2.1E-05 46.9 4.5 34 365-399 2-35 (356)
498 PRK09853 putative selenate red 85.8 2.7 5.8E-05 51.6 8.8 36 362-398 537-572 (1019)
499 COG1062 AdhC Zn-dependent alco 85.6 5.9 0.00013 42.9 10.2 100 363-505 185-285 (366)
500 PRK06398 aldose dehydrogenase; 85.6 5.8 0.00013 40.1 10.1 76 361-444 3-80 (258)
No 1
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.5e-158 Score=1250.18 Aligned_cols=562 Identities=54% Similarity=0.904 Sum_probs=507.6
Q ss_pred CCceeecCCccCCCchhHHHHHhCCccccCCCCCCeeEEEEecCCCCCCCcceEEEecCCCCCCCcccccccccccCCCc
Q 007355 12 GSILQFAPFQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLPSDSDEQSSTAEISRGSRN 91 (606)
Q Consensus 12 ~~~l~f~p~~s~vd~~Fw~~L~~~Kl~~~kL~~~~~~i~g~~~~~~~~~~~~~l~Ld~~SF~~~~~~~~~~~~~~~~~~~ 91 (606)
+.+|||+||.|++|++|||+|+++|||+|||||+|+.|+|+|++.+..+ +++++++.||++... ..
T Consensus 5 ~~~LqFaPf~S~lD~~FWhels~~KLd~~kLD~sP~~I~~~~~~~~~sg--~~lsl~~~~~~~~~~------------~~ 70 (669)
T KOG2337|consen 5 EIILQFAPFESFLDTGFWHELSELKLDKLKLDDSPKSITGHLTNRNASG--CLLSLSYGAFNSLAN------------TP 70 (669)
T ss_pred cceeeecchhhhcchHHHHHHHhhhcchhcccCCcceeeceeccCCCcc--ceEEEecccccccCC------------CC
Confidence 3689999999999999999999999999999999999999999988766 899999999986432 12
Q ss_pred eeeeeeEEEeccchHHhhccCHHHHHHHHHHHHHHhhhcCCcccCcccccchheeeeeccCCcEEEEEeEeeccCCCCCc
Q 007355 92 KCTVPGTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPA 171 (606)
Q Consensus 92 ~~~~~G~L~N~NTie~fK~~DK~~lL~~~a~~Iw~~i~sg~~~~~~~~l~~F~l~~fADLKKYkFyYWfAFPal~~~~~~ 171 (606)
.|++.|+|||+||+|+||++||+.||+++|++||++|++|.+++||++|++|+||||||||||+||||||||||..+.+.
T Consensus 71 ~~~a~Gtl~N~NT~esFk~lDK~~ll~~ea~eiwesi~sG~aledP~lL~rFliisFADLKky~fyYW~~fPal~~~~~~ 150 (669)
T KOG2337|consen 71 GCPAIGTLYNTNTLESFKNLDKQLLLEQEAEEIWESIKSGKALEDPNLLSRFLIISFADLKKYKFYYWFCFPALVLPEPV 150 (669)
T ss_pred CCccceeeeccccHHHHhhhhHHHHHHHHHHHHHHhhccCccccChhhhhhhhhhhhhhhhhheeEEEeecchhhcCCcc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999988887664
Q ss_pred eeeccCcccccCChHHHHHHHHHHhhhhhcCCCCCccEEEEEEeCCCcceeeccccchhhcCCC-ccEEEEEEcCCCCCC
Q 007355 172 TVVDLKPASLWFSSQEAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDG-QKLLFGFYDPCHLQN 250 (606)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~f~D~s~~~~ 250 (606)
......|.+++++... .+.++++.|+......+.|||+++.+++..+.+.+|+++..+..+. +.++ +++|||.+++
T Consensus 151 ~~I~~~p~~~~~s~~~--~l~~~~~~~~d~~~~~~~pffl~s~ss~~~~~~~~l~~ld~c~~~~~k~~~-~~~D~~~la~ 227 (669)
T KOG2337|consen 151 SLIKDLPPSQEFSPKG--SLGAACNILFDTARVYNFPFFLLSKSSDDESKILELSELDNCQGNHTKICL-VVYDPSQLAS 227 (669)
T ss_pred hhhcccCchhccCccc--chHHHHHHHHhhhcccccceEEEEccccchhhhhhhhhhhhcccCCceEEE-Eecccccccc
Confidence 4433555556666655 5678889999988888999999998887778888889888877544 4566 9999999999
Q ss_pred CCChHHHHHHHHHHhhcCceeEEEEEEEeCCCc-ccCCCceEEEEEeecCCCCCCCCCCccccceEec-CCcccceEecc
Q 007355 251 HPGWPLRNFLALILTRWKLKSVLFLCYRENRGF-TDLGLSLVGEALITVPQGWGDHQCVPNTVGWELN-KGRKVPRCISL 328 (606)
Q Consensus 251 ~pgw~lrN~l~~~~~~~~~~~~~v~~~r~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~gwe~~-~gkl~p~~~dl 328 (606)
+||||+||||+++++||.++.+.++|||++++. ++++.++.+.+..+.. ...+.+|+++|||+| +||++||++||
T Consensus 228 ~pgwplrN~La~~~~~~~~~~i~~~~lR~~~~~~~~~s~~~~~~~~~~~~---~s~~~~~k~VGWErN~~Gkl~PR~V~L 304 (669)
T KOG2337|consen 228 YPGWPLRNFLALAAHRWPLKHIHFFLLRDRQNMGIDLSLVIKFAVTLACD---LSQNAVPKAVGWERNKNGKLGPRMVDL 304 (669)
T ss_pred cCChhhHHHHHHHHhhcccceeEEEEEEeccccCccceeEEEEEEecccc---ccccCCccccceeeccCCCcCceEEeh
Confidence 999999999999999999999999999997653 3555555555555543 135578999999999 89999999999
Q ss_pred cCCCChhhhhhhhHHhhhhhhhhhcCCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCc
Q 007355 329 AKSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS 408 (606)
Q Consensus 329 ~~~~dp~~la~~a~dlnlry~R~r~lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~ 408 (606)
+.+|||.+|+|+++|||+++||||++|+++++++++.||||+|||||||+|||+|++|||+|||+||+++|++||++||.
T Consensus 305 s~~mDP~~LaessVdLNLkLMkWRlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQs 384 (669)
T KOG2337|consen 305 SDSMDPKKLAESSVDLNLKLMKWRLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQS 384 (669)
T ss_pred hhccChHHHhhhhcccchheeeeeecCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHH
Q 007355 409 LYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESR 488 (606)
Q Consensus 409 L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R 488 (606)
||+++||+.+|++||++||++|++|||.++.+++.++||||||||+.+.+++...+.+.++++|++||+||++||+||+|
T Consensus 385 Ly~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESR 464 (669)
T KOG2337|consen 385 LYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESR 464 (669)
T ss_pred hhhhhhhhccCCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhh
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCC
Q 007355 489 WLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDS 568 (606)
Q Consensus 489 ~ll~~~~~~~~~p~I~aalG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s 568 (606)
|+++.+|..++|.+||+|+|||+|+|||||.++..... .+.+.+ -..+++.++|||||+||+||+||
T Consensus 465 WLPtll~a~~~KivINaALGFDsylVMRHG~~~~~~~~------------d~q~s~-~~~i~~~qLGCYFCnDV~AP~nS 531 (669)
T KOG2337|consen 465 WLPTLLAAAKNKIVINAALGFDSYLVMRHGTGRKEASD------------DGQSSD-LKCINGDQLGCYFCNDVVAPGNS 531 (669)
T ss_pred hhHHHHHhhhcceEeeeecccceeEEEecCCCCccccc------------cccccc-ccccCcccceeEeEcceecCCCc
Confidence 99999999999999999999999999999988632110 111111 12456789999999999999999
Q ss_pred CCCCcccCccccccccHHHHHHHHHHHHHHHHccCCCC
Q 007355 569 TANRTLDQQCTVTRPGLAPIASALAVELFVGVLHHPKG 606 (606)
Q Consensus 569 ~~~rtldq~ctV~~Pgv~~ias~~AvEll~~ll~~p~~ 606 (606)
++||||||||||||||+++||+++|||||++|||||.|
T Consensus 532 l~DRTLDQqCTVtRPG~a~IA~alAVELlvslLQhP~~ 569 (669)
T KOG2337|consen 532 LTDRTLDQQCTVTRPGVANIASALAVELLVSLLQHPLG 569 (669)
T ss_pred ccccchhheeeccCCchhHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999954
No 2
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=2.1e-147 Score=1219.88 Aligned_cols=557 Identities=46% Similarity=0.746 Sum_probs=499.1
Q ss_pred ecCCccCCCchhHHHHHhCCccccCCCCCCeeEEEEecCCCCCCCcceEEEecCCCCCCCcccccccccccCCCceeeee
Q 007355 17 FAPFQSSVDEGFWHRLSSLKLNKLGIDESPIPITGFYAPCSHLQVSNHLSLLTESLPSDSDEQSSTAEISRGSRNKCTVP 96 (606)
Q Consensus 17 f~p~~s~vd~~Fw~~L~~~Kl~~~kL~~~~~~i~g~~~~~~~~~~~~~l~Ld~~SF~~~~~~~~~~~~~~~~~~~~~~~~ 96 (606)
|+||+|+||++|||+|+++|||++||||+|++|+|+|++++..+.+++++||++||+++.. ...+.++++++
T Consensus 1 f~pf~S~vd~~Fw~~Ls~~KL~~~kLdds~~~i~g~y~~~~~~~~~~~l~l~~~sf~~~~~--------~~~~~~~~~~~ 72 (664)
T TIGR01381 1 FVPFVSCVDTGFWNEVSKLKLNKWKLDDTPKCISGQLSLHQTEGFKCHLSLSYDSLSSLES--------TTGTHAQLSVS 72 (664)
T ss_pred CCCcccccCcHHHHHHHhhhcccccCCCCceeEEEEEeccCCCCCCceEEEehhhCCcccc--------ccCCCCceEEE
Confidence 8999999999999999999999999999999999999999888888999999999975421 01245688999
Q ss_pred eEEEeccchHHhhccCHHHHHHHHHHHHHHhhhcCCcccCcccccchheeeeeccCCcEEEEEeEeeccCCCCCceeecc
Q 007355 97 GTLYNSNTLESFYTIDKQSLLKQEAKKIWEDIHSGKAVEDSTVLSRFLVISFADLKKWSFHYWFAFPALVLDPPATVVDL 176 (606)
Q Consensus 97 G~L~N~NTie~fK~~DK~~lL~~~a~~Iw~~i~sg~~~~~~~~l~~F~l~~fADLKKYkFyYWfAFPal~~~~~~~~~~~ 176 (606)
|+|+|+||||+||++||++||+++|++||++|.+|+++++|++|++|+||||||||||||||||||||+.++++|++.+.
T Consensus 73 G~l~N~NTiE~Fk~~DK~~ll~~~~~~i~~~i~~g~~~~~pslL~~F~ilsfADLKky~f~YWfafPal~~~~~~~~~~~ 152 (664)
T TIGR01381 73 GILLNYNTVESFKKVDKSDLLRSEAEKIWESIQTRKWLQDPSLLSQFFIISFADLKKFKFYYWFCFPALVYPSKVNKLSG 152 (664)
T ss_pred EEEEecccHHHHHhhhHHHHHHHHHHHHHHHHhcCCcccCHHHHHhhHhhhhhhcccceEEEEEEEcccCCCCcceEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred CcccccCChHHHHHHHHHHhhhhhcCCCCCccEEEEEEeCCCcceeeccccchhhcCCCccEEEEEEcCCCCCCCCChHH
Q 007355 177 KPASLWFSSQEAESVSAACSDWRNSSLTADVPYFLLTIAPNSRATIRHLKDWEACEGDGQKLLFGFYDPCHLQNHPGWPL 256 (606)
Q Consensus 177 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~D~s~~~~~pgw~l 256 (606)
....+.++.++.+.+.+.++.|++.....+.+||++.+..+..+++.+|++|+.. ....++ ||+|||+++++|||||
T Consensus 153 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ffl~~~~~~~~~~~~~l~~~~~~--~~~~~~-~f~Dps~~~~~Pgw~l 229 (664)
T TIGR01381 153 LTESIKQEITPLESLGADHKILFDFYRKNNFPFFLYSKQSSKMLELSELENNTNP--DDELCV-GFADPSPVAYSAGWML 229 (664)
T ss_pred cccccccCchhhHHHHHHHHHHHhhcccccccEEEEEecCCCceeEeehhhcccC--CCceEE-EEEcCCCCCCCCCHHH
Confidence 3333447777788888999999998766778999998665666788888888732 223377 9999999999999999
Q ss_pred HHHHHHHHhhcC-ceeEEEEEEEeCCCcccCCCceEEEEE------eecCCCCCCCCCCccccceEec-CCcccceEecc
Q 007355 257 RNFLALILTRWK-LKSVLFLCYRENRGFTDLGLSLVGEAL------ITVPQGWGDHQCVPNTVGWELN-KGRKVPRCISL 328 (606)
Q Consensus 257 rN~l~~~~~~~~-~~~~~v~~~r~~~~~~~~~~s~~~~~~------~~~~~~~~~~~~~~~~~gwe~~-~gkl~p~~~dl 328 (606)
||||++++++|+ +++++|+|||+..+ . +|++++++ ++... .....|+++|||+| .||++||++||
T Consensus 230 RN~L~~l~~~~~~~~~~~vl~~R~~~~---~-~s~~~~~~~~~~~~~~~~~---~~~~~pk~~GWErn~~GKl~pr~~dL 302 (664)
T TIGR01381 230 RNVLAAVAHLHPTWKHVHIFSLRSADS---I-GIKYLWTTLLPSAELSSDG---AQNAVPKAVGWERNANGKLQPISVDL 302 (664)
T ss_pred HHHHHHHHHhcCCCceEEEEEEecCCC---C-CcEEEEEeeccccccCccc---ccccCcccccccccCCCCcCceEech
Confidence 999999999997 88999999998732 2 69999998 44211 12225999999999 99999999999
Q ss_pred cCCCChhhhhhhhHHhhhhhhhhhcCCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCc
Q 007355 329 AKSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS 408 (606)
Q Consensus 329 ~~~~dp~~la~~a~dlnlry~R~r~lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~ 408 (606)
+++|||.+||++++|||+||||||++|++++++|+++||||+|||||||+||++|++||||+|||||+|+|++|||+||+
T Consensus 303 ~~~mdP~~la~~avdlnlkLmkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~ 382 (664)
T TIGR01381 303 SKEFDPKRLAERSVDLNLKLMKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQS 382 (664)
T ss_pred hhhcCHHHHHHHHHHHHHHHHhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHH
Q 007355 409 LYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESR 488 (606)
Q Consensus 409 L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R 488 (606)
||+++|+.++|++||++|+++|++|||+++++++...|||||||++...+++...+.+++.+++++||+||+|+|++++|
T Consensus 383 Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR 462 (664)
T TIGR01381 383 LSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREAR 462 (664)
T ss_pred ccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHH
Confidence 99999998889999999999999999999999999999999999987767788888999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCC
Q 007355 489 WLPTLLCANTNKITITAALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDS 568 (606)
Q Consensus 489 ~ll~~~~~~~~~p~I~aalG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s 568 (606)
|+++.+|..++||+|++++||+||++||||..+....+... ..+.....++|||||+|+++|.+|
T Consensus 463 ~L~n~~c~~~~kplI~aAlGfdg~lvmrhG~~~~~~~~~~~---------------~~~~~~~~~~gCYfC~Dv~aP~~s 527 (664)
T TIGR01381 463 WLPTVLCSRHKKIAISAALGFDSYVVMRHGIGRSESVSDVS---------------SSDSVPYSRLGCYFCNDVTAPGDS 527 (664)
T ss_pred HHHHHHHHHhCCCEEEEEeccceEEEEEecccccccccccc---------------cccccCCCCCCccccCCCCCCCcc
Confidence 99999999999999999999999999999987522110000 001122358999999999999999
Q ss_pred CCCCcccCccccccccHHHHHHHHHHHHHHHHccCCCC
Q 007355 569 TANRTLDQQCTVTRPGLAPIASALAVELFVGVLHHPKG 606 (606)
Q Consensus 569 ~~~rtldq~ctV~~Pgv~~ias~~AvEll~~ll~~p~~ 606 (606)
+.+|||||||||+|||+++|||++|+|+|++|+|||+|
T Consensus 528 ~~~rtlDqqCtVtrPgv~~ias~~AvEll~~llqhp~~ 565 (664)
T TIGR01381 528 TTDRTLDQQCTVTRPGTAMIASGLAVELLVSVLQHPLP 565 (664)
T ss_pred cccccccccceEecchHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999975
No 3
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=100.00 E-value=4e-65 Score=524.79 Aligned_cols=224 Identities=63% Similarity=1.061 Sum_probs=205.8
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcch--hcCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDD--CLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~D--i~~~G~~Kaeaaa~~L~~inP~v~v~~~~ 443 (606)
||+|+|||||||++|++|++||||+|+|||+|+|+++||+||+||+++| + |++||++|+++|+++||+++++++.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~i---Gk~Ka~aaa~~L~~iNP~v~v~~~~ 77 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKG---GKPKAEAAAERLKEIFPSIDATGIV 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhc---CccHHHHHHHHHHHHCCCcEEEEee
Confidence 7999999999999999999999999999999999999999999999999 7 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEecCCceEEEEEcCCCCCc
Q 007355 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDSFLVMRHGPGPFS 523 (606)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aalG~~g~vv~~~g~~~~~ 523 (606)
+.|||||||++..+.++.+.+.+++++++++||+||+|+|++++||+++.+|..++||+|++++||+||++||||..+..
T Consensus 78 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aalGfdg~lvmrhg~~~~~ 157 (307)
T cd01486 78 LSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINAALGFDSYLVMRHGAGPQS 157 (307)
T ss_pred eeccccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEEeccceEEEEEeCCCccc
Confidence 99999999999877778888999999999999999999999999999999999999999999999999999999986532
Q ss_pred ccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccccccccHHHHHHHHHHHHHHHHccC
Q 007355 524 ITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~~Pgv~~ias~~AvEll~~ll~~ 603 (606)
..+... +..+.....++|||||||+++|.||++||||||||||||||+++|||++|||||++|+||
T Consensus 158 ~~~~~~--------------~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtrpG~a~ias~~avEl~~s~lqh 223 (307)
T cd01486 158 QSGSGD--------------SSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTRPGLSMIASSIAVELLVSLLQH 223 (307)
T ss_pred cccccc--------------ccccccCCCCcceeeeCCEecCCCCCCCcccCcccceecCchHHHHHHHHHHHHHHHHcC
Confidence 111000 001123456999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 007355 604 PKG 606 (606)
Q Consensus 604 p~~ 606 (606)
|+|
T Consensus 224 p~~ 226 (307)
T cd01486 224 PLG 226 (307)
T ss_pred CCc
Confidence 986
No 4
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.4e-40 Score=341.08 Aligned_cols=204 Identities=27% Similarity=0.316 Sum_probs=185.8
Q ss_pred HHhhhhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCC
Q 007355 342 ADLNLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNG 418 (606)
Q Consensus 342 ~dlnlry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~ 418 (606)
.|.-.||.||.++|++| |.+|++++|||||||||||.++.+|+++|||+|-|||+|.||.+|++||.++++.++
T Consensus 41 ~dei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~v--- 117 (427)
T KOG2017|consen 41 LDEILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARV--- 117 (427)
T ss_pred HHHHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhh---
Confidence 34457999999999985 899999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcC
Q 007355 419 GDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT 498 (606)
Q Consensus 419 G~~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~ 498 (606)
|+.||++|+..++++||.++|..|... .+..++.++|++||+|.|||||..+|+++++.|+..
T Consensus 118 g~~Ka~sA~~~lr~lNs~v~v~~y~~~-----------------L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlL 180 (427)
T KOG2017|consen 118 GMHKAESAAAFLRRLNSHVEVQTYNEF-----------------LSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLL 180 (427)
T ss_pred hhHHHHHHHHHHHhcCCCceeeechhh-----------------ccchhHHHHhhccceEEEcCCCccchhhhhhHHHHc
Confidence 999999999999999999999999853 478999999999999999999999999999999999
Q ss_pred CCeEEEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCc
Q 007355 499 NKITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQ 577 (606)
Q Consensus 499 ~~p~I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ 577 (606)
|||+|++ +++++|++.+.|-. ..+||+|.....|..+.. +.
T Consensus 181 gkpLVSgSaLr~EGQLtvYny~---------------------------------~GPCYRClFP~Ppp~~~v-----t~ 222 (427)
T KOG2017|consen 181 GKPLVSGSALRWEGQLTVYNYN---------------------------------NGPCYRCLFPNPPPPEAV-----TN 222 (427)
T ss_pred CCcccccccccccceeEEeecC---------------------------------CCceeeecCCCCcChHHh-----cc
Confidence 9999998 79999999998841 357999997766643221 35
Q ss_pred cc---cccccHHHHHHHHHHHHHHHHccC
Q 007355 578 CT---VTRPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 578 ct---V~~Pgv~~ias~~AvEll~~ll~~ 603 (606)
|. |.+|.+++|+++||+|.||.+++-
T Consensus 223 C~dgGVlGpv~GviG~mQALE~iKli~~~ 251 (427)
T KOG2017|consen 223 CADGGVLGPVTGVIGCMQALETIKLIAGI 251 (427)
T ss_pred cccCceeecchhhhhHHHHHHHHHHHHcc
Confidence 65 999999999999999999998864
No 5
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=8.3e-39 Score=345.19 Aligned_cols=202 Identities=21% Similarity=0.180 Sum_probs=178.7
Q ss_pred hhhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh
Q 007355 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (606)
Q Consensus 345 nlry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (606)
..||+||+.+|++| |++|+++||+|+|||||||++|++|+++|||+|+|||+|+|+.+||+||+||+.+|+ |++
T Consensus 16 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dv---G~~ 92 (390)
T PRK07411 16 YERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWV---GKP 92 (390)
T ss_pred HHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHC---CCc
Confidence 35899999888765 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCe
Q 007355 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (606)
Q Consensus 422 Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p 501 (606)
||++++++|+++||.++++++...+ +.++..+++.++|+||+|+|+.++|+++|++|..+++|
T Consensus 93 Ka~~a~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 93 KIESAKNRILEINPYCQVDLYETRL-----------------SSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeccc-----------------CHHhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998655 56778889999999999999999999999999999999
Q ss_pred EEEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccc-
Q 007355 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT- 579 (606)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ct- 579 (606)
+|++ ..|+.|++.++.. ...+||.|.....|... .-+.|.
T Consensus 156 ~v~~~~~g~~g~~~v~~~---------------------------------~~~~c~~c~~~~~~~~~-----~~~~c~~ 197 (390)
T PRK07411 156 NVYGSIFRFEGQATVFNY---------------------------------EGGPNYRDLYPEPPPPG-----MVPSCAE 197 (390)
T ss_pred EEEEEEccCEEEEEEECC---------------------------------CCCCChHHhcCCCCCcc-----cCCCCcc
Confidence 9998 5999999886631 13579999953322211 113465
Q ss_pred --cccccHHHHHHHHHHHHHHHHccCC
Q 007355 580 --VTRPGLAPIASALAVELFVGVLHHP 604 (606)
Q Consensus 580 --V~~Pgv~~ias~~AvEll~~ll~~p 604 (606)
|.+|.++++|++||.|+++.|+|.+
T Consensus 198 ~gvlg~~~~~~g~~~a~eaik~l~g~~ 224 (390)
T PRK07411 198 GGVLGILPGIIGVIQATETIKIILGAG 224 (390)
T ss_pred CCcCcchHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999864
No 6
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.7e-38 Score=322.92 Aligned_cols=202 Identities=26% Similarity=0.326 Sum_probs=176.4
Q ss_pred hhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChH
Q 007355 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (606)
Q Consensus 346 lry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (606)
.||.||+.+|.+| |++|+++||+|+|+||+||++|++|+++|||+|+|||+|.|+.+|++||+||+.+|+ |++|
T Consensus 11 ~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---G~~K 87 (245)
T PRK05690 11 LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI---GQPK 87 (245)
T ss_pred HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC---CChH
Confidence 5899999876664 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeE
Q 007355 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (606)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~ 502 (606)
|++++++|+++||.++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+
T Consensus 88 a~~a~~~l~~lnp~v~i~~~~~~i-----------------~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~ 150 (245)
T PRK05690 88 VESARAALARINPHIAIETINARL-----------------DDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPL 150 (245)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------CHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEE
Confidence 999999999999999999988654 556778899999999999999999999999999999999
Q ss_pred EEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccccc
Q 007355 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVT 581 (606)
Q Consensus 503 I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~ 581 (606)
|++ ..|+.|++.++. | +...+||.|.....|.+... . ..-.|.
T Consensus 151 v~~~~~g~~G~v~~~~---~-----------------------------~~~~~c~~c~~~~~~~~~~~-~---~~~gv~ 194 (245)
T PRK05690 151 VSGAAIRMEGQVTVFT---Y-----------------------------QDDEPCYRCLSRLFGENALT-C---VEAGVM 194 (245)
T ss_pred EEeeeccCCceEEEEe---c-----------------------------CCCCceeeeccCCCCCCCCC-c---ccCCcc
Confidence 997 589999987653 1 12358999995544432210 0 122389
Q ss_pred cccHHHHHHHHHHHHHHHHccC
Q 007355 582 RPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 582 ~Pgv~~ias~~AvEll~~ll~~ 603 (606)
+|.++++|+++|.|+++.|++.
T Consensus 195 ~~~~~~~~~~~a~e~ik~l~g~ 216 (245)
T PRK05690 195 APLVGVIGSLQAMEAIKLLTGY 216 (245)
T ss_pred chHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999975
No 7
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=3.1e-38 Score=320.18 Aligned_cols=202 Identities=25% Similarity=0.322 Sum_probs=175.9
Q ss_pred hhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChH
Q 007355 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (606)
Q Consensus 346 lry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (606)
.||.||+.++.++ |++|+++||+|+|+||+||++|++|+++|||+|+|+|+|.|+.+|++||++|+.+|+ |++|
T Consensus 3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~di---G~~K 79 (240)
T TIGR02355 3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANI---GQPK 79 (240)
T ss_pred cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhC---CCcH
Confidence 5899999988764 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeE
Q 007355 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (606)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~ 502 (606)
|++++++|+++||+++++++...+ +.+++.++++++|+||+|+|+.++|.+++++|+++++|+
T Consensus 80 a~~a~~~l~~inp~v~i~~~~~~i-----------------~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~ 142 (240)
T TIGR02355 80 VESAKDALTQINPHIAINPINAKL-----------------DDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPL 142 (240)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999987654 557788899999999999999999999999999999999
Q ss_pred EEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccccc
Q 007355 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVT 581 (606)
Q Consensus 503 I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~ 581 (606)
|++ +.|+.|++.++.. +...+||.|.....|..... ...-+|.
T Consensus 143 v~~~~~g~~G~v~~~~~--------------------------------~~~~~c~~C~~~~~~~~~~~----~~~~gv~ 186 (240)
T TIGR02355 143 VSGAAIRMEGQVSVFTY--------------------------------QDGEPCYRCLSRLFGENALS----CVEAGVM 186 (240)
T ss_pred EEEEecccEeEEEEEec--------------------------------CCCCCccccccccCCCCCCC----ccccCcc
Confidence 997 5899999764420 12357999985444432110 0122489
Q ss_pred cccHHHHHHHHHHHHHHHHccC
Q 007355 582 RPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 582 ~Pgv~~ias~~AvEll~~ll~~ 603 (606)
+|.++++|+++|.|+++.|++.
T Consensus 187 ~p~~~~~~~~~a~e~ik~l~g~ 208 (240)
T TIGR02355 187 APVVGVVGSLQAMEAIKVLAGI 208 (240)
T ss_pred chHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999975
No 8
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=8.5e-38 Score=322.15 Aligned_cols=207 Identities=18% Similarity=0.129 Sum_probs=176.3
Q ss_pred Hhhhhhhhhhc-CCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh
Q 007355 343 DLNLKLMRWRQ-LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (606)
Q Consensus 343 dlnlry~R~r~-lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (606)
+-+.||.||+. ++..+|++|++++|+|+|||||||++|.+|+++|||+|+|+|+|+|+.||++||++|+.+|+ |++
T Consensus 5 ~~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~di---G~~ 81 (287)
T PRK08223 5 DYDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTL---GRP 81 (287)
T ss_pred cHHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHC---CCc
Confidence 33568999974 46667999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh--HHHHHHHHHHHcCC
Q 007355 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTN 499 (606)
Q Consensus 422 Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--e~R~ll~~~~~~~~ 499 (606)
||++++++|+++||.++|+.+...+ +.+++.++++++|+|+||+|+. ++|+++++.|+.++
T Consensus 82 Kve~a~~~l~~iNP~v~V~~~~~~l-----------------~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~ 144 (287)
T PRK08223 82 KAEVLAEMVRDINPELEIRAFPEGI-----------------GKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRG 144 (287)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccc-----------------CccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcC
Confidence 9999999999999999999998654 6678899999999999999986 89999999999999
Q ss_pred CeEEEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCC------C
Q 007355 500 KITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTAN------R 572 (606)
Q Consensus 500 ~p~I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~------r 572 (606)
+|+|++ ..|+.|++.+++ | ..+||.|...+.|.....+ .
T Consensus 145 iP~V~~~~~g~~gqv~v~~---p-------------------------------~~p~~~~~f~~~~~~~~~~~~~~~~~ 190 (287)
T PRK08223 145 IPALTAAPLGMGTALLVFD---P-------------------------------GGMSFDDYFDLSDGMNEVEKAVRFLA 190 (287)
T ss_pred CCEEEEeccCCeEEEEEEc---C-------------------------------CCCchhhhcCCCCCCCchhhhcccCC
Confidence 999998 599999987764 1 1368888855422111100 1
Q ss_pred cccCccc---cc----------------cccHHHHHHHHHHHHHHHHccC
Q 007355 573 TLDQQCT---VT----------------RPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 573 tldq~ct---V~----------------~Pgv~~ias~~AvEll~~ll~~ 603 (606)
.+-+.|. |. +|..++|+++||.|+++.|+|.
T Consensus 191 ~~~p~c~~~gvl~~~~~~~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~ 240 (287)
T PRK08223 191 GLAPSMLHRGYLADPSRVDLENRTGPSTGLACQLCAGVVATEVLKILLGR 240 (287)
T ss_pred cCCCccccCCccccccccccccccCCCccchHHHHHHHHHHHHHHHHhCC
Confidence 2234664 66 7888899999999999999974
No 9
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=7.2e-38 Score=334.17 Aligned_cols=201 Identities=25% Similarity=0.261 Sum_probs=177.4
Q ss_pred hhhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh
Q 007355 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (606)
Q Consensus 345 nlry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (606)
..||.||+.+|++| |++|+++||+|+||||+||++|++|+++|||+|+|||+|.|+.|||+||+||+++|+ |++
T Consensus 6 ~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~ 82 (355)
T PRK05597 6 IARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGV---GQP 82 (355)
T ss_pred HhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHC---CCh
Confidence 35899999887765 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCe
Q 007355 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (606)
Q Consensus 422 Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p 501 (606)
||++++++|+++||.++++++...+ +.++..++++++|+||+|+|+.++|++++.+|+++++|
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i-----------------~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRL-----------------TWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIP 145 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeec-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998655 56778889999999999999999999999999999999
Q ss_pred EEEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcc--
Q 007355 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (606)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~c-- 578 (606)
+|.+ ..|+.|++.++. | +..+||.|.....|. ... ...|
T Consensus 146 ~v~~~~~g~~g~v~~~~---~------------------------------~~~~~~~~~~~~~~~---~~~--~~~c~~ 187 (355)
T PRK05597 146 HVWASILGFDAQLSVFH---A------------------------------GHGPIYEDLFPTPPP---PGS--VPSCSQ 187 (355)
T ss_pred EEEEEEecCeEEEEEEc---C------------------------------CCCCCHHHhCCCCCC---ccC--CCCccc
Confidence 9998 589999998763 1 234799998433221 110 1235
Q ss_pred -ccccccHHHHHHHHHHHHHHHHccC
Q 007355 579 -TVTRPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 579 -tV~~Pgv~~ias~~AvEll~~ll~~ 603 (606)
+|.+|.++++|++||.|+++.|++.
T Consensus 188 ~gv~g~~~~~~g~~~a~e~ik~l~g~ 213 (355)
T PRK05597 188 AGVLGPVVGVVGSAMAMEALKLITGV 213 (355)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 4999999999999999999999975
No 10
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=7.2e-38 Score=309.71 Aligned_cols=198 Identities=26% Similarity=0.337 Sum_probs=171.1
Q ss_pred hhhhhhcCCcc---hhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHH
Q 007355 347 KLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (606)
Q Consensus 347 ry~R~r~lp~~---~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Ka 423 (606)
||+||+.++.+ +|++|+++||+|+|+||+||++|++|+++||++|+++|+|.|+.+|++||+||+.+|+ |++||
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~di---G~~Ka 77 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDV---GRPKV 77 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhC---CChHH
Confidence 79999887555 4899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEE
Q 007355 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (606)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I 503 (606)
++++++|+++||.++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+|
T Consensus 78 ~~~~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i 140 (202)
T TIGR02356 78 EVAAQRLRELNSDIQVTALKERV-----------------TAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLI 140 (202)
T ss_pred HHHHHHHHHhCCCCEEEEehhcC-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987654 4567788999999999999999999999999999999999
Q ss_pred EE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcccccc
Q 007355 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTR 582 (606)
Q Consensus 504 ~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~~ 582 (606)
.+ ..|+.|++.... | +++++||.|.....+.. ...-...++.+
T Consensus 141 ~~~~~g~~G~~~~~~---p-----------------------------~~~~~c~~c~~~~~~~~----~~~~~~~~~~~ 184 (202)
T TIGR02356 141 SAAVVGFGGQLMVFD---P-----------------------------GGEGPCLRCLFPDIADT----GPSCATAGVIG 184 (202)
T ss_pred EEEeccCeEEEEEEe---C-----------------------------CCCCCChhhcCCCCccc----CCCCccCCccc
Confidence 98 589999988653 1 12468999984331111 00012334899
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 007355 583 PGLAPIASALAVELFVGV 600 (606)
Q Consensus 583 Pgv~~ias~~AvEll~~l 600 (606)
|.++++|+++|.|+++.|
T Consensus 185 ~~~~~~~~~~a~e~~k~l 202 (202)
T TIGR02356 185 PVVGVIGSLQALEALKLL 202 (202)
T ss_pred hHHHHHHHHHHHHHHHhC
Confidence 999999999999999875
No 11
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=1.6e-37 Score=312.44 Aligned_cols=199 Identities=31% Similarity=0.387 Sum_probs=175.2
Q ss_pred hhhhhhcCCcc---hhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHH
Q 007355 347 KLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (606)
Q Consensus 347 ry~R~r~lp~~---~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Ka 423 (606)
||+||+.++.+ +|++|+++||+|+||||+||++|++|+++||++|+|+|+|.|+.+|++||+||+.+|+ |++||
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~Ka 77 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADV---GQPKA 77 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhC---CChHH
Confidence 79999877444 4899999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEE
Q 007355 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (606)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I 503 (606)
++++++|+++||.++++.+...+ +.+++.++++++|+||+|+|+.++|.+++++|+++++|+|
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i-----------------~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i 140 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERL-----------------DAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLV 140 (228)
T ss_pred HHHHHHHHHhCCCCEEEEeccee-----------------CHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987654 5677888999999999999999999999999999999999
Q ss_pred EEe-cCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcc---c
Q 007355 504 TAA-LGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC---T 579 (606)
Q Consensus 504 ~aa-lG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~c---t 579 (606)
+++ .|+.|++.... +++.+||.|.....+... ++.| .
T Consensus 141 ~~g~~g~~g~v~~~~---------------------------------p~~~~c~~c~~~~~~~~~------~~~~~~~~ 181 (228)
T cd00757 141 SGAVLGFEGQVTVFI---------------------------------PGEGPCYRCLFPEPPPPG------VPSCAEAG 181 (228)
T ss_pred EEEeccCEEEEEEEC---------------------------------CCCCCCccccCCCCCCCC------CCccccCC
Confidence 984 89999987543 234689999865443321 1223 4
Q ss_pred cccccHHHHHHHHHHHHHHHHccCC
Q 007355 580 VTRPGLAPIASALAVELFVGVLHHP 604 (606)
Q Consensus 580 V~~Pgv~~ias~~AvEll~~ll~~p 604 (606)
++.|.++++|+++|.|+++.|++.+
T Consensus 182 ~~~~~~~~~a~l~a~e~i~~l~g~~ 206 (228)
T cd00757 182 VLGPLVGVIGSLQALEALKILLGIG 206 (228)
T ss_pred cchhHHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999875
No 12
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=2.5e-37 Score=334.11 Aligned_cols=204 Identities=23% Similarity=0.194 Sum_probs=177.8
Q ss_pred hhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChH
Q 007355 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (606)
Q Consensus 346 lry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (606)
.||+||+.+|++| |++|+++||+|+||||+||++|++|+++|||+|+|||+|.|+.+|++||++|+.+|+ |++|
T Consensus 21 ~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di---G~~K 97 (392)
T PRK07878 21 ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDV---GRSK 97 (392)
T ss_pred HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcC---CChH
Confidence 5899998877665 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeE
Q 007355 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (606)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~ 502 (606)
|++++++|+++||+++++.+...| +.++..++++++|+||+|+|+.++|+++|++|+.+++|+
T Consensus 98 a~~a~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~ 160 (392)
T PRK07878 98 AQSARDSIVEINPLVNVRLHEFRL-----------------DPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPY 160 (392)
T ss_pred HHHHHHHHHHhCCCcEEEEEeccC-----------------ChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999987655 566778899999999999999999999999999999999
Q ss_pred EEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccc--
Q 007355 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (606)
Q Consensus 503 I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ct-- 579 (606)
|++ ..|+.|++.++....| ++..+||.|.+...|.. ..-+.|.
T Consensus 161 v~~~~~g~~G~v~~~~~~~~-----------------------------~~~~~c~~c~~~~~~~~-----~~~~~~~~~ 206 (392)
T PRK07878 161 VWGSIYRFEGQASVFWEDAP-----------------------------DGLGLNYRDLYPEPPPP-----GMVPSCAEG 206 (392)
T ss_pred EEEEeccCEEEEEEEecCCC-----------------------------CCCCCeeeeecCCCCCc-----cCCCCCccC
Confidence 998 5999999886632111 12467999986432221 1113454
Q ss_pred -cccccHHHHHHHHHHHHHHHHccC
Q 007355 580 -VTRPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 580 -V~~Pgv~~ias~~AvEll~~ll~~ 603 (606)
|.+|.++++|++||.|+++.|++.
T Consensus 207 gv~g~~~~~~g~~~a~e~ik~l~g~ 231 (392)
T PRK07878 207 GVLGVLCASIGSIMGTEAIKLITGI 231 (392)
T ss_pred CccchHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999975
No 13
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=7.1e-37 Score=308.56 Aligned_cols=199 Identities=22% Similarity=0.160 Sum_probs=174.2
Q ss_pred hhhhhhhcC-CcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCC-hHH
Q 007355 346 LKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKA 423 (606)
Q Consensus 346 lry~R~r~l-p~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~-~Ka 423 (606)
.||.||+.+ ..-+|++|+++||+|+||||+||++|++|+++|||+|+|+|+|.|+.+|++||++|+.+|+ |+ +|+
T Consensus 8 ~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv---G~~~k~ 84 (231)
T PRK08328 8 ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDL---GKNPKP 84 (231)
T ss_pred HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhc---CchHHH
Confidence 589999865 4445999999999999999999999999999999999999999999999999999999999 99 699
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEE
Q 007355 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (606)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I 503 (606)
++++++|+++||+++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+|
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i 147 (231)
T PRK08328 85 LSAKWKLERFNSDIKIETFVGRL-----------------SEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLV 147 (231)
T ss_pred HHHHHHHHHhCCCCEEEEEeccC-----------------CHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987543 5567788999999999999999999999999999999999
Q ss_pred EE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcccccc
Q 007355 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTR 582 (606)
Q Consensus 504 ~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~~ 582 (606)
++ ..|+.|++.+.. +++++||.|.. |..... ...+.+.+
T Consensus 148 ~g~~~g~~G~v~~~~---------------------------------p~~~~c~~~~~---~~~~~~----~~~~~~~~ 187 (231)
T PRK08328 148 HGAVEGTYGQVTTIV---------------------------------PGKTKRLREIF---PKVKKK----KGKFPILG 187 (231)
T ss_pred EEeeccCEEEEEEEC---------------------------------CCCCCCHHHhC---CCCCCc----cccCCcCc
Confidence 98 589999987542 23467999984 322111 23567999
Q ss_pred ccHHHHHHHHHHHHHHHHccCC
Q 007355 583 PGLAPIASALAVELFVGVLHHP 604 (606)
Q Consensus 583 Pgv~~ias~~AvEll~~ll~~p 604 (606)
|.++++|+.+|.|+++.|++..
T Consensus 188 ~~~~ii~~~~a~e~~k~l~g~~ 209 (231)
T PRK08328 188 ATAGVIGSIQAMEVIKLITGYG 209 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999753
No 14
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=7.4e-37 Score=324.17 Aligned_cols=205 Identities=24% Similarity=0.279 Sum_probs=176.0
Q ss_pred hhhhhhhhcCCcc---hhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh
Q 007355 345 NLKLMRWRQLPSL---NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (606)
Q Consensus 345 nlry~R~r~lp~~---~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (606)
..||+||++++.+ +|++|++++|+|||+||+||++|++|+++|||+|+|||+|.|+.||++||+||+++|+ ..|++
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~-~~g~~ 80 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDA-KQKKP 80 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHc-cCCcc
Confidence 3589999987655 4899999999999999999999999999999999999999999999999999999998 22589
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCe
Q 007355 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (606)
Q Consensus 422 Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p 501 (606)
||++++++|+++||+++++++..++ +.++++++++++|+||+|+|+.++|+++|++|.++++|
T Consensus 81 Ka~aa~~~l~~inp~v~i~~~~~~~-----------------~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip 143 (338)
T PRK12475 81 KAIAAKEHLRKINSEVEIVPVVTDV-----------------TVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIP 143 (338)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999987644 56788889999999999999999999999999999999
Q ss_pred EEEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcccc
Q 007355 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV 580 (606)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV 580 (606)
+|.+ +.|+.|++.+.. +++++||.|.....|.... + ...-.|
T Consensus 144 ~i~~~~~g~~G~~~~~~---------------------------------P~~tpC~~Cl~~~~p~~~~---~-c~~~Gv 186 (338)
T PRK12475 144 WIYGGCVGSYGVTYTII---------------------------------PGKTPCLRCLMEHVPVGGA---T-CDTAGI 186 (338)
T ss_pred EEEEEecccEEEEEEEC---------------------------------CCCCCCHHHhcCCCCCCCC---C-CccCCc
Confidence 9997 589999876543 2357899999543332111 1 011248
Q ss_pred ccccHHHHHHHHHHHHHHHHccCC
Q 007355 581 TRPGLAPIASALAVELFVGVLHHP 604 (606)
Q Consensus 581 ~~Pgv~~ias~~AvEll~~ll~~p 604 (606)
.+|.++++|+.+|.|+|+.|++.+
T Consensus 187 l~p~v~~iaslqa~EalK~L~g~~ 210 (338)
T PRK12475 187 IQPAVQIVVAYQVTEALKILVEDF 210 (338)
T ss_pred CchHHHHHHHHHHHHHHHHHhCCC
Confidence 889999999999999999999864
No 15
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.6e-36 Score=325.14 Aligned_cols=204 Identities=24% Similarity=0.278 Sum_probs=178.3
Q ss_pred hhhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh
Q 007355 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (606)
Q Consensus 345 nlry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (606)
..||.||..+|++| |++|++++|+|+||||+||++|++|+++||++|+|+|+|.|+.||++||+||+.+|+ |++
T Consensus 19 ~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~di---G~~ 95 (370)
T PRK05600 19 LRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDV---GRP 95 (370)
T ss_pred HHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHC---CCH
Confidence 36899999887765 899999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCe
Q 007355 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (606)
Q Consensus 422 Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p 501 (606)
||++++++|+++||+++++++...+ +.+++.++++++|+||+|+|+.++|+++|++|+++++|
T Consensus 96 Ka~~~~~~l~~~np~v~i~~~~~~i-----------------~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP 158 (370)
T PRK05600 96 KVEVAAERLKEIQPDIRVNALRERL-----------------TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTP 158 (370)
T ss_pred HHHHHHHHHHHHCCCCeeEEeeeec-----------------CHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999998655 56788899999999999999999999999999999999
Q ss_pred EEEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcc--
Q 007355 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (606)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~c-- 578 (606)
+|++ ..|+.|++.++... + ..+.+||.|.....|. .+ .-+.|
T Consensus 159 ~v~~~~~g~~G~v~v~~~~-~-----------------------------~~~~~~~~~l~~~~~~---~~--~~~~c~~ 203 (370)
T PRK05600 159 LVWGTVLRFHGELAVFNSG-P-----------------------------DHRGVGLRDLFPEQPS---GD--SIPDCAT 203 (370)
T ss_pred EEEEEEecCEEEEEEEecC-C-----------------------------CCCCCCcHhhCCCCCc---cc--cCCCCcc
Confidence 9998 58999998765310 0 1135799998432221 11 11357
Q ss_pred -ccccccHHHHHHHHHHHHHHHHccC
Q 007355 579 -TVTRPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 579 -tV~~Pgv~~ias~~AvEll~~ll~~ 603 (606)
.|.+|.++++|+++|.|+++.|++.
T Consensus 204 ~gvlg~~~~~ig~~~a~eaik~l~g~ 229 (370)
T PRK05600 204 AGVLGATTAVIGALMATEAIKFLTGI 229 (370)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhCC
Confidence 4899999999999999999999976
No 16
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=3.4e-36 Score=319.28 Aligned_cols=202 Identities=27% Similarity=0.332 Sum_probs=176.8
Q ss_pred hhhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh
Q 007355 345 NLKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF 421 (606)
Q Consensus 345 nlry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~ 421 (606)
+.||.||++++.+| |++|+++||+|+||||+||++|++|+++|||+|+|||.|.|+.+|++||+||+++|+ ..|++
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~di-g~g~~ 80 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDV-KNNLP 80 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHh-cCCCc
Confidence 56999999876665 899999999999999999999999999999999999999999999999999999999 12459
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCe
Q 007355 422 KAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKI 501 (606)
Q Consensus 422 Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p 501 (606)
|+++++++|+++||.++++++..++ +.+++.++++++|+||+|+|+.++|++++++|.++++|
T Consensus 81 Ka~aa~~~l~~inp~v~v~~~~~~~-----------------~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP 143 (339)
T PRK07688 81 KAVAAKKRLEEINSDVRVEAIVQDV-----------------TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIP 143 (339)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccC-----------------CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999987644 56788889999999999999999999999999999999
Q ss_pred EEEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcc--
Q 007355 502 TITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQC-- 578 (606)
Q Consensus 502 ~I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~c-- 578 (606)
+|.+ ..|+.|++.+.. +++.+||.|.....|... +.|
T Consensus 144 ~i~~~~~g~~G~~~~~~---------------------------------p~~~pC~~Cl~~~~~~~~-------~~c~~ 183 (339)
T PRK07688 144 WIYGACVGSYGLSYTII---------------------------------PGKTPCLRCLLQSIPLGG-------ATCDT 183 (339)
T ss_pred EEEEeeeeeeeEEEEEC---------------------------------CCCCCCeEeecCCCCCCC-------CCCcc
Confidence 9997 589999876542 134689999865444321 235
Q ss_pred -ccccccHHHHHHHHHHHHHHHHccCC
Q 007355 579 -TVTRPGLAPIASALAVELFVGVLHHP 604 (606)
Q Consensus 579 -tV~~Pgv~~ias~~AvEll~~ll~~p 604 (606)
.|.+|.++++|+++|.|+++.|++..
T Consensus 184 ~gv~~p~~~~i~~~~a~ealk~l~g~~ 210 (339)
T PRK07688 184 AGIISPAVQIVASYQVTEALKLLVGDY 210 (339)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhCCC
Confidence 58999999999999999999999864
No 17
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.5e-34 Score=310.99 Aligned_cols=205 Identities=26% Similarity=0.297 Sum_probs=176.5
Q ss_pred hhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChH
Q 007355 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (606)
Q Consensus 346 lry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (606)
.||.||+.++.++ |++|+++||+|+|+||+|+++|++|+++||++|+|+|+|.|+.+|++||++|+.+|+ |++|
T Consensus 114 ~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~di---G~~K 190 (376)
T PRK08762 114 ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRV---GQPK 190 (376)
T ss_pred HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhC---CCcH
Confidence 4799998776664 899999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeE
Q 007355 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (606)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~ 502 (606)
|++++++|+++||.++++.+...+ +.+++.++++++|+||+|+|+.++|++++++|+++++|+
T Consensus 191 a~~~~~~l~~~np~v~v~~~~~~~-----------------~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~ 253 (376)
T PRK08762 191 VDSAAQRLAALNPDVQVEAVQERV-----------------TSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPL 253 (376)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------ChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999887544 556788899999999999999999999999999999999
Q ss_pred EEEe-cCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccc--
Q 007355 503 ITAA-LGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (606)
Q Consensus 503 I~aa-lG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ct-- 579 (606)
|+++ .|+.|++.+..... .++..+||.|.....|. ...-+.|.
T Consensus 254 i~~~~~g~~g~v~~~~p~~-----------------------------~~~~~~c~~c~~~~~~~-----~~~~~~~~~~ 299 (376)
T PRK08762 254 VYGAVFRFEGQVSVFDAGR-----------------------------QRGQAPCYRCLFPEPPP-----PELAPSCAEA 299 (376)
T ss_pred EEEEeccCEEEEEEEeCCC-----------------------------CCCCCCCHhhcCCCCCC-----cccCCCCccC
Confidence 9984 89999988764111 12357899998432221 11123454
Q ss_pred -cccccHHHHHHHHHHHHHHHHccCC
Q 007355 580 -VTRPGLAPIASALAVELFVGVLHHP 604 (606)
Q Consensus 580 -V~~Pgv~~ias~~AvEll~~ll~~p 604 (606)
|.+|.++++|+++|.|+++.|++..
T Consensus 300 gv~g~~~~~~~~~~a~e~~k~l~g~~ 325 (376)
T PRK08762 300 GVLGVLPGVIGLLQATEAIKLLLGIG 325 (376)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999853
No 18
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=3.2e-33 Score=275.64 Aligned_cols=174 Identities=21% Similarity=0.231 Sum_probs=157.6
Q ss_pred hhhhhhc-CCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHH
Q 007355 347 KLMRWRQ-LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMA 425 (606)
Q Consensus 347 ry~R~r~-lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaea 425 (606)
||+||.. ++..+|++|+++||+|+|+||+||++|++|+++||++|+++|+|.|+.+|++||++|+.+|+ |++||++
T Consensus 3 ~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~di---G~~Ka~a 79 (197)
T cd01492 3 LYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDL---GQNRAEA 79 (197)
T ss_pred hhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHc---CchHHHH
Confidence 7999974 45567999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 426 AVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 426 aa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
++++|+++||+++++.+...+ + +..+++++++|+||+|+|+.+.|..++++|+++++|+|++
T Consensus 80 ~~~~L~~lNp~v~i~~~~~~~-----------------~-~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 80 SLERLRALNPRVKVSVDTDDI-----------------S-EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHHHHCCCCEEEEEecCc-----------------c-ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999987544 2 3456788999999999999999999999999999999998
Q ss_pred -ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcccccccc
Q 007355 506 -ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPG 584 (606)
Q Consensus 506 -alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~~Pg 584 (606)
..|+.|+++.. + .+|.
T Consensus 142 ~~~G~~G~v~~d-----------------------------------------~----------------------~~p~ 158 (197)
T cd01492 142 GVHGLFGFVFAD-----------------------------------------L----------------------LAPV 158 (197)
T ss_pred EecCCEEEEEEe-----------------------------------------c----------------------cccH
Confidence 47888887631 0 5799
Q ss_pred HHHHHHHHHHHHHHHHccCC
Q 007355 585 LAPIASALAVELFVGVLHHP 604 (606)
Q Consensus 585 v~~ias~~AvEll~~ll~~p 604 (606)
++++|+.+|.|+++.|++..
T Consensus 159 ~~~~~~~~~~e~~k~~~~~~ 178 (197)
T cd01492 159 AAVVGGILAQDVINALSKRE 178 (197)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999753
No 19
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=3e-33 Score=285.41 Aligned_cols=203 Identities=28% Similarity=0.375 Sum_probs=181.5
Q ss_pred hhhhhhhcCCcch---hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChH
Q 007355 346 LKLMRWRQLPSLN---LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (606)
Q Consensus 346 lry~R~r~lp~~~---q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (606)
.||+||..++.++ |++|+..||+|+|+||+||+++++|+++|||+++|+|.|+|+.+|++||++|+.+|+ |++|
T Consensus 9 ~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di---g~~K 85 (254)
T COG0476 9 ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV---GKPK 85 (254)
T ss_pred HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc---CCcH
Confidence 5899999888776 999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeE
Q 007355 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (606)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~ 502 (606)
++++++.|+++||.++++++...+ +.+++.++++++|+|++|+|+.++|+++|+.|+.+++|+
T Consensus 86 a~~a~~~l~~ln~~v~v~~~~~~l-----------------~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pl 148 (254)
T COG0476 86 AEVAAKALRKLNPLVEVVAYLERL-----------------DEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPL 148 (254)
T ss_pred HHHHHHHHHHhCCCCeEEEeeccc-----------------ChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCe
Confidence 999999999999999999998644 777889999999999999999999999999999999999
Q ss_pred EEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccc--
Q 007355 503 ITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCT-- 579 (606)
Q Consensus 503 I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ct-- 579 (606)
+++ +.|+.|++.++... ...+||.|.....|..... ...|.
T Consensus 149 i~~~~~~~~g~~~~~~~~--------------------------------~~~~c~~~~~~~~~~~~~~----~~~c~~~ 192 (254)
T COG0476 149 VHGGAIGFEGQVTVIIPG--------------------------------DKTPCYRCLFPEKPPPGLV----PTSCDEA 192 (254)
T ss_pred EeeeeccceEEEEEEecC--------------------------------CCCCcccccCCCCCCcccc----ccccccC
Confidence 997 58999999877521 1467999996666542221 11354
Q ss_pred -cccccHHHHHHHHHHHHHHHHccCC
Q 007355 580 -VTRPGLAPIASALAVELFVGVLHHP 604 (606)
Q Consensus 580 -V~~Pgv~~ias~~AvEll~~ll~~p 604 (606)
|.+|.++.+++.+|.|+++.+++.+
T Consensus 193 gv~~~~~~~~~~~~~~~~~k~~~g~~ 218 (254)
T COG0476 193 GVLGPLVGVVGSLQALEAIKLLTGIG 218 (254)
T ss_pred CccccccchhhhHHHHHHHHHhcCCC
Confidence 9999999999999999999999875
No 20
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=9e-33 Score=272.65 Aligned_cols=175 Identities=19% Similarity=0.246 Sum_probs=157.0
Q ss_pred hhhhhhcC-CcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCc--chhcCCCChHH
Q 007355 347 KLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTL--DDCLNGGDFKA 423 (606)
Q Consensus 347 ry~R~r~l-p~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~--~Di~~~G~~Ka 423 (606)
||+||..+ +..+|++|+++||+|+|+||+||++|++|+++||++|+++|+|.|+.+|++||++|+. +|+ |++||
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i---G~~Ka 77 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS---GMNRA 77 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc---CchHH
Confidence 58999754 5567999999999999999999999999999999999999999999999999999998 889 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEE
Q 007355 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (606)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I 503 (606)
++++++|+++||+++++.+...+ ....++..++++++|+||+|+|+.+.|..++++|+++++|+|
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~---------------~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i 142 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDS---------------LSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFI 142 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEeccc---------------ccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999987543 112456788899999999999999999999999999999999
Q ss_pred EE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcccccc
Q 007355 504 TA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTR 582 (606)
Q Consensus 504 ~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~~ 582 (606)
.+ ..|+.|+++.. +
T Consensus 143 ~~~~~G~~G~v~~~----------------------------------------~------------------------- 157 (198)
T cd01485 143 SCATYGLIGYAFFD----------------------------------------F------------------------- 157 (198)
T ss_pred EEEeecCEEEEEEc----------------------------------------h-------------------------
Confidence 98 58999987621 0
Q ss_pred ccHHHHHHHHHHHHHHHHccCC
Q 007355 583 PGLAPIASALAVELFVGVLHHP 604 (606)
Q Consensus 583 Pgv~~ias~~AvEll~~ll~~p 604 (606)
|.++++|+.+|.|+++.|++.+
T Consensus 158 p~~~~~~~~~~~e~~k~l~~~~ 179 (198)
T cd01485 158 PIAAFLGGVVAQEAIKSISGKF 179 (198)
T ss_pred hHHHHHHHHHHHHHHHHHhCCC
Confidence 8899999999999999998764
No 21
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=100.00 E-value=3.5e-32 Score=271.12 Aligned_cols=191 Identities=22% Similarity=0.180 Sum_probs=159.2
Q ss_pred CCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhh
Q 007355 354 LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI 433 (606)
Q Consensus 354 lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~i 433 (606)
++..+|++|++++|+|+||||+||++|++|+++||++|+|+|.|.|+.+|++||+++ .+|+ |++||++++++|+++
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dv---G~~Ka~~a~~~l~~l 93 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQI---GMPKVEALKENLLEI 93 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhC---CChHHHHHHHHHHHH
Confidence 344569999999999999999999999999999999999999999999999999876 7889 999999999999999
Q ss_pred CCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcC-CCeEEEE-ecCCce
Q 007355 434 FPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITA-ALGFDS 511 (606)
Q Consensus 434 nP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~-~~p~I~a-alG~~g 511 (606)
||+++++.+...+ +.+++.++++++|+||+|+|+.++|..++..|.++ ++|+|.+ +.|..+
T Consensus 94 np~v~v~~~~~~i-----------------~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~ 156 (212)
T PRK08644 94 NPFVEIEAHNEKI-----------------DEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYG 156 (212)
T ss_pred CCCCEEEEEeeec-----------------CHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccC
Confidence 9999999998655 55677889999999999999999999999999998 9999987 566655
Q ss_pred EEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccccccccHHHHHHH
Q 007355 512 FLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASA 591 (606)
Q Consensus 512 ~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~~Pgv~~ias~ 591 (606)
++...+.. .....||.|.+... . ..+...|.+|.++++|++
T Consensus 157 ~~~~~~~~-------------------------------~~~~~~~~~~~~~~----~----~~~~~gv~~~~~~~i~~~ 197 (212)
T PRK08644 157 DSNSIKTR-------------------------------RIGKNFYIVGDFVT----E----AKPGNPLMAPRVNIAAAH 197 (212)
T ss_pred CceEEEec-------------------------------CCCCCeeECCCCCc----c----cCCCCCccchHHHHHHHH
Confidence 54433210 01124766643211 1 013456899999999999
Q ss_pred HHHHHHHHHccCC
Q 007355 592 LAVELFVGVLHHP 604 (606)
Q Consensus 592 ~AvEll~~ll~~p 604 (606)
||.|+|+.|++++
T Consensus 198 ~a~ealk~l~~~~ 210 (212)
T PRK08644 198 QANLVLRLILGEE 210 (212)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999875
No 22
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.97 E-value=1.2e-30 Score=263.35 Aligned_cols=174 Identities=21% Similarity=0.232 Sum_probs=145.5
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
||+|+|+||+||+++++|+++|||+|+++|.|+|+.|||+||+||+.+|+ |++||++|+++|+++||+++++.+..+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dv---Gk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDI---GRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhC---ChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999998865
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEe-cCCceEEEEEcCCCCCcc
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA-LGFDSFLVMRHGPGPFSI 524 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aa-lG~~g~vv~~~g~~~~~~ 524 (606)
| + ...+...++++++|+||+|+|+.++|.+++++|+.+++|+|+++ .|+.|++.+..
T Consensus 78 i-------~--------~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~------- 135 (234)
T cd01484 78 V-------G--------PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVIL------- 135 (234)
T ss_pred C-------C--------hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEc-------
Confidence 5 0 01122357899999999999999999999999999999999984 89999986542
Q ss_pred cccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcccc-ccccHHHHHHHHHHHHH
Q 007355 525 THDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV-TRPGLAPIASALAVELF 597 (606)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV-~~Pgv~~ias~~AvEll 597 (606)
++.++||.|.. .|... + -+.||+ ..|......-..|.+++
T Consensus 136 --------------------------p~~t~c~~C~~--~~~~~----~-~p~Cti~~~P~~~~hci~~a~~~~ 176 (234)
T cd01484 136 --------------------------PGMTECIECTL--YPPQK----N-FPMCTIASMPRLPEHCIEWARMLQ 176 (234)
T ss_pred --------------------------CCCCCCcccCC--CCCCC----C-CCccccCCCCCCchHHHHHHHHHH
Confidence 23567999984 22111 1 257885 45777666666666654
No 23
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.97 E-value=3.5e-30 Score=271.01 Aligned_cols=186 Identities=17% Similarity=0.206 Sum_probs=158.0
Q ss_pred hhhhhhhcCCcc-----hhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCC
Q 007355 346 LKLMRWRQLPSL-----NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420 (606)
Q Consensus 346 lry~R~r~lp~~-----~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~ 420 (606)
.||.||.++|++ +|++|++++|+ |||+||.+|.+|++ |||+|+|||+|.|+.||++ .||+.+|+ |+
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~di---G~ 123 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFI---LK 123 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhc---Cc
Confidence 599999988663 49999999999 99999999999999 9999999999999999999 99999999 99
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHH--HHHHHHcC
Q 007355 421 FKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWL--PTLLCANT 498 (606)
Q Consensus 421 ~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~l--l~~~~~~~ 498 (606)
+|+++|+++|.++||.++++.+ .++++++|+|++|+|+.++|++ +|++|.++
T Consensus 124 ~K~~~a~~~L~~lnp~v~i~~~--------------------------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~ 177 (318)
T TIGR03603 124 KDIRDLTSNLDALELTKNVDEL--------------------------KDLLKDYNYIIICTEHSNISLLRGLNKLSKET 177 (318)
T ss_pred HHHHHHHHHHHHhCCCCEEeeH--------------------------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHH
Confidence 9999999999999999988653 3678999999999999999977 99999999
Q ss_pred CCeEEEE-ecCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCC---------CC--
Q 007355 499 NKITITA-ALGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVA---------PT-- 566 (606)
Q Consensus 499 ~~p~I~a-alG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~a---------p~-- 566 (606)
++|+|.+ ..|+.|++.... | +.+|||.|..... +.
T Consensus 178 ~~PlV~gav~g~~Gqv~~~~---P------------------------------~~t~C~~Cl~~r~~~~~~~~~~~~~~ 224 (318)
T TIGR03603 178 KKPNTIAFIDGPFVFITCTL---P------------------------------PETGCFECLERRLLSRLDWRLYGVFT 224 (318)
T ss_pred CCCEEEEEEccCEEEEEEEe---C------------------------------CCCCcHHHccchhhcccccccccccc
Confidence 9999988 589999987542 1 2458999994411 10
Q ss_pred -CCCCCCcccCcc---ccccccHHHHHHHHHHHHHHHHccC
Q 007355 567 -DSTANRTLDQQC---TVTRPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 567 -~s~~~rtldq~c---tV~~Pgv~~ias~~AvEll~~ll~~ 603 (606)
...+. .+.| .|.+|.++++|+++|.|++ .+++.
T Consensus 225 ~~~~~~---~~~~~~~gv~gp~~giigsl~a~Eai-~i~g~ 261 (318)
T TIGR03603 225 EYLVKA---ENNVSTAELIFPLLNIKKNLVVSEIF-AIGSL 261 (318)
T ss_pred cccCCC---CCCCccCCeehhHHHHHHHHHHHHHH-HHhCC
Confidence 00110 1234 4789999999999999999 88764
No 24
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.97 E-value=2e-29 Score=249.22 Aligned_cols=183 Identities=21% Similarity=0.216 Sum_probs=147.7
Q ss_pred chhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCC
Q 007355 357 LNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA 436 (606)
Q Consensus 357 ~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~ 436 (606)
..|++|+++||+|+||||+||++|.+|+++||++|+|+|.|.|+.+|++||. |..+|+ |++|+++++++|+++||.
T Consensus 14 ~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~i---G~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 14 KIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQV---GEPKTEALKENISEINPY 89 (200)
T ss_pred HHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhC---CCHHHHHHHHHHHHHCCC
Confidence 4589999999999999999999999999999999999999999999999996 567899 999999999999999999
Q ss_pred cEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHH-HHHHcCCC-eEEEEecCCceEEE
Q 007355 437 VAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPT-LLCANTNK-ITITAALGFDSFLV 514 (606)
Q Consensus 437 v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~-~~~~~~~~-p~I~aalG~~g~vv 514 (606)
++++.+...+ +.+++.++++++|+||+|+|+.++|..+. .++..++. +++. +.|+.|+..
T Consensus 90 ~~i~~~~~~i-----------------~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 90 TEIEAYDEKI-----------------TEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGLAGYDD 151 (200)
T ss_pred CEEEEeeeeC-----------------CHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-EeccccCCC
Confidence 9999987654 66788899999999999999999998754 55555554 4454 456666542
Q ss_pred --EEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccccccccHHHHHHHH
Q 007355 515 --MRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASAL 592 (606)
Q Consensus 515 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~~Pgv~~ias~~ 592 (606)
.+. + ......||.|.|...+ . .....|..|.|+++||+|
T Consensus 152 ~~~~~---~----------------------------~~~~~~~~~~~~~~~~--~------~~~~g~~~p~v~~~a~~q 192 (200)
T TIGR02354 152 ANSIK---T----------------------------RKISKHFYLCGDGKSD--A------KQGLGLMAPRVQICAAHQ 192 (200)
T ss_pred CceEE---e----------------------------cccCCCEEEcCCCCCc--c------cCCCCCchhHHHHHHHHH
Confidence 111 0 0112469999653211 0 023358999999999999
Q ss_pred HHHHHHHH
Q 007355 593 AVELFVGV 600 (606)
Q Consensus 593 AvEll~~l 600 (606)
|.|+|+.+
T Consensus 193 a~~~l~~~ 200 (200)
T TIGR02354 193 ANLVLELI 200 (200)
T ss_pred HHHHHHhC
Confidence 99999864
No 25
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.97 E-value=1.9e-29 Score=244.17 Aligned_cols=172 Identities=25% Similarity=0.253 Sum_probs=143.7
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
||+|+||||+||++|++|+++||++|+|+|.|.|+.+|++||++ ..+|+ |++|+++++++|+++||.++++.+...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~v---g~~Ka~~~~~~l~~lnp~v~i~~~~~~ 76 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQI---GEPKVEALKENLREINPFVKIEAINIK 76 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhC---CChHHHHHHHHHHHHCCCCEEEEEEee
Confidence 69999999999999999999999999999999999999999995 56899 999999999999999999999998865
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcC-CCeEEEE-ecCCceEEEEEcCCCCCc
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITA-ALGFDSFLVMRHGPGPFS 523 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~-~~p~I~a-alG~~g~vv~~~g~~~~~ 523 (606)
+ +.+++.++++++|+||+|+|+.++|..++..|.++ ++|+|.+ +.|+.|++..+...
T Consensus 77 ~-----------------~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~---- 135 (174)
T cd01487 77 I-----------------DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTK---- 135 (174)
T ss_pred c-----------------ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEec----
Confidence 4 55678889999999999999999998777766666 9999987 57777776644210
Q ss_pred ccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCccccccccHHHHHHHHHHHHH
Q 007355 524 ITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTVTRPGLAPIASALAVELF 597 (606)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV~~Pgv~~ias~~AvEll 597 (606)
.....||.|.+.. | .+ .....|.+|.++++|+++|.|+|
T Consensus 136 ---------------------------~~~~~~~~~~~~~-~-~~------~~~~g~~~~~~~~~~~~~~~e~~ 174 (174)
T cd01487 136 ---------------------------KISDNFYICGDLV-N-EA------KEGLGLMAPRVNICAAHQANLVL 174 (174)
T ss_pred ---------------------------CCCCCeEEeecCC-C-CC------CCCcCccccHHHHHHHHHHHhhC
Confidence 0123699998422 1 11 12456899999999999999985
No 26
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.96 E-value=1.5e-29 Score=298.35 Aligned_cols=236 Identities=19% Similarity=0.203 Sum_probs=185.9
Q ss_pred ccccceEec---CCcccce----EecccCCCChh-hh-hhhhHHhhhhhhhhhcC-CcchhhhhcCCcEEEECCChHHHH
Q 007355 309 PNTVGWELN---KGRKVPR----CISLAKSMDPT-RL-AISAADLNLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQ 378 (606)
Q Consensus 309 ~~~~gwe~~---~gkl~p~----~~dl~~~~dp~-~l-a~~a~dlnlry~R~r~l-p~~~q~~L~~~kVllvGaGgLGs~ 378 (606)
.+++|.|.- +||+.|. .+|-.+.+... .+ .+.....|.||+||+.+ +.-+|++|+++||+|||||||||+
T Consensus 354 GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e 433 (1008)
T TIGR01408 354 GGVVSQEVLKAVTGKFSPLCQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCE 433 (1008)
T ss_pred chHHHHHHHHHhcCCCCCceeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHH
Confidence 355677753 8999997 35544444221 11 11223468999999755 445699999999999999999999
Q ss_pred HHHHHHHhCC-----CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecccCCCCCCC
Q 007355 379 VARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPV 453 (606)
Q Consensus 379 vA~~La~~GV-----g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~ 453 (606)
++++|+++|| |+|+|+|.|+|+.|||+||+||+.+|+ |++||++|+++++++||+++++++..+|
T Consensus 434 ~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~Ka~vaa~~l~~~Np~v~I~~~~~~v------- 503 (1008)
T TIGR01408 434 MLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHI---GKPKSYTAADATLKINPQIKIDAHQNRV------- 503 (1008)
T ss_pred HHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHc---CcHHHHHHHHHHHHHCCCCEEEEEEeec-------
Confidence 9999999999 899999999999999999999999999 9999999999999999999999998765
Q ss_pred CCccccccccChhhH--HHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE-ecCCceEEEEEcCCCCCcccccccc
Q 007355 454 PCQEEDSVLDDCRRL--TDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRHGPGPFSITHDVKT 530 (606)
Q Consensus 454 ~~~~~~~~~~~~~~l--~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a-alG~~g~vv~~~g~~~~~~~~~~~~ 530 (606)
..+.+++ .++++++|+|++|+|+.++|.+++.+|+.+++|+|++ ..|+.|++.+.-
T Consensus 504 --------~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~i------------- 562 (1008)
T TIGR01408 504 --------GPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVV------------- 562 (1008)
T ss_pred --------ChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEe-------------
Confidence 0111222 5788999999999999999999999999999999997 499999986542
Q ss_pred hhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcccc-ccccHHHHHHHHHHHHHHHHcc
Q 007355 531 EAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV-TRPGLAPIASALAVELFVGVLH 602 (606)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV-~~Pgv~~ias~~AvEll~~ll~ 602 (606)
+..+.||.|.. -.|..+ -+.||+ ..|..--.+-..|.+++..++.
T Consensus 563 --------------------p~~te~y~~~~-d~~~~~------~P~Ctl~~~P~~~~h~i~wa~~~f~~~F~ 608 (1008)
T TIGR01408 563 --------------------PHLTESYGSSR-DPPEKE------IPFCTLKSFPAAIEHTIQWARDKFEGLFS 608 (1008)
T ss_pred --------------------CCCcCCCCCCC-CCCCCC------CCcccccCCCCCchHHHHHHHHHHHHHHH
Confidence 23456999872 122222 257886 4577777777788887776654
No 27
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.96 E-value=4.9e-29 Score=230.84 Aligned_cols=133 Identities=36% Similarity=0.478 Sum_probs=122.9
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
+++||+|+|+|++||++|++|+++||++|+|+|+|.|+++|++||++|+.+|+ |++|+++++++|+++||+++++.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~np~~~v~~~ 77 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDV---GKNKAEAAKERLQEINPDVEVEAI 77 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGT---TSBHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccc---hhHHHHHHHHHHHHhcCceeeeee
Confidence 57899999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE-ecCCceEEEE
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVM 515 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a-alG~~g~vv~ 515 (606)
...+ +.++..++++++|+||+|+|+.+.|..++++|+++++|+|++ ..|+.|+++|
T Consensus 78 ~~~~-----------------~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 78 PEKI-----------------DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp ESHC-----------------SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred eccc-----------------ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 8654 678889999999999999999999999999999999999998 4899999976
No 28
>PRK14852 hypothetical protein; Provisional
Probab=99.96 E-value=6.8e-29 Score=287.29 Aligned_cols=162 Identities=16% Similarity=0.099 Sum_probs=143.3
Q ss_pred hhhhhhHHhhhhhhhhhc-CCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcch
Q 007355 336 RLAISAADLNLKLMRWRQ-LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDD 414 (606)
Q Consensus 336 ~la~~a~dlnlry~R~r~-lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~D 414 (606)
++..-..=.+.+|.||+. +...+|++|+++||+|+||||+||++|.+|+++|||+|+|+|+|+|+.||+|||++|+.+|
T Consensus 303 ~~~~~~~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~d 382 (989)
T PRK14852 303 KLETRDAYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIAS 382 (989)
T ss_pred hHHHHHHHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhh
Confidence 333333344678999974 4555699999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCChHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh--HHHHHHH
Q 007355 415 CLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPT 492 (606)
Q Consensus 415 i~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--e~R~ll~ 492 (606)
+ |++||++++++|+++||.++|+.+...| +.++++++++++|+||+|+|+. +.|..++
T Consensus 383 I---G~~Kaevaa~~l~~INP~v~I~~~~~~I-----------------~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~ 442 (989)
T PRK14852 383 F---GRGKLDVMTERALSVNPFLDIRSFPEGV-----------------AAETIDAFLKDVDLLVDGIDFFALDIRRRLF 442 (989)
T ss_pred C---CChHHHHHHHHHHHHCCCCeEEEEecCC-----------------CHHHHHHHhhCCCEEEECCCCccHHHHHHHH
Confidence 9 9999999999999999999999998655 7788999999999999999975 4666777
Q ss_pred HHHHcCCCeEEEEe-cCCceEEEEEc
Q 007355 493 LLCANTNKITITAA-LGFDSFLVMRH 517 (606)
Q Consensus 493 ~~~~~~~~p~I~aa-lG~~g~vv~~~ 517 (606)
..|+++++|+|+++ .|+.|++.++.
T Consensus 443 ~~c~~~~IP~I~ag~~G~~g~v~v~~ 468 (989)
T PRK14852 443 NRALELGIPVITAGPLGYSCALLVFM 468 (989)
T ss_pred HHHHHcCCCEEEeeccccCeeEEEEc
Confidence 78999999999984 89999998764
No 29
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.96 E-value=4.4e-29 Score=261.33 Aligned_cols=133 Identities=24% Similarity=0.345 Sum_probs=122.7
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
||+|+||||+||+++++|+++|||+|+|+|.|.|+.+||+||+||+.+|+ |++||++|+++|+++||+++++++...
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dV---Gk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHV---GKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHc---CcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999865
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE-ecCCceEEEEEc
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a-alG~~g~vv~~~ 517 (606)
| .+.....++++++|+||+|.|+.++|++++.+|+.+++|+|++ ..|+.|++.+..
T Consensus 78 i----------------~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~ 134 (312)
T cd01489 78 I----------------KDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIK 134 (312)
T ss_pred C----------------CCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEc
Confidence 5 1113345789999999999999999999999999999999997 489999998664
No 30
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.96 E-value=5.2e-29 Score=258.29 Aligned_cols=130 Identities=26% Similarity=0.306 Sum_probs=119.0
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
||+|+||||+||+++++|+++|||+|+|+|.|+|+.|||+||+||+.+|+ |++||++|+++|+++||+++++++...
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dI---Gk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDI---GKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHc---chHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999765
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcC--------CCeEEEEe-cCCceEEEEE
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT--------NKITITAA-LGFDSFLVMR 516 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~--------~~p~I~aa-lG~~g~vv~~ 516 (606)
| . +...++++++|+||+++|+.++|.+++..|... ++|+|+++ .|+.|++.+.
T Consensus 78 i-----------------~-~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi 139 (291)
T cd01488 78 I-----------------Q-DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVI 139 (291)
T ss_pred c-----------------C-chhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEE
Confidence 5 1 223678999999999999999999999987654 49999984 8999998654
No 31
>PRK07877 hypothetical protein; Provisional
Probab=99.96 E-value=5.5e-29 Score=284.53 Aligned_cols=140 Identities=19% Similarity=0.200 Sum_probs=131.8
Q ss_pred hhhhhhhhc-CCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCcCcCCCcchhcCCCChH
Q 007355 345 NLKLMRWRQ-LPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGV-RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK 422 (606)
Q Consensus 345 nlry~R~r~-lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GV-g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~K 422 (606)
..||.|++. +..-+|++|+++||+|+|+| +||.+|.+|+++|| |+|+|||+|.||.|||||| +|+..|+ |++|
T Consensus 87 ~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di---G~~K 161 (722)
T PRK07877 87 AVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL---GVNK 161 (722)
T ss_pred HHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc---ccHH
Confidence 468999984 56667999999999999997 99999999999996 9999999999999999998 6899999 9999
Q ss_pred HHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeE
Q 007355 423 AMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (606)
Q Consensus 423 aeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~ 502 (606)
|++++++|+++||+++|+.+...| +.++++++++++|+||||+|+.++|+++++.|.++++|+
T Consensus 162 v~~a~~~l~~inp~i~v~~~~~~i-----------------~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~ 224 (722)
T PRK07877 162 AVVAARRIAELDPYLPVEVFTDGL-----------------TEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPV 224 (722)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccC-----------------CHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 999999999999999999998765 788999999999999999999999999999999999999
Q ss_pred EEEe
Q 007355 503 ITAA 506 (606)
Q Consensus 503 I~aa 506 (606)
|+++
T Consensus 225 i~~~ 228 (722)
T PRK07877 225 LMAT 228 (722)
T ss_pred EEEc
Confidence 9985
No 32
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.96 E-value=4.3e-29 Score=258.54 Aligned_cols=147 Identities=23% Similarity=0.274 Sum_probs=135.3
Q ss_pred hhhhhcC-CcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHH
Q 007355 348 LMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAA 426 (606)
Q Consensus 348 y~R~r~l-p~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaa 426 (606)
|+||+.+ +..+|++|++++|||+|+||||+++|++|+++||++|+|+|+|.|+.+|++||++++.+|+ |++||+++
T Consensus 2 YsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dI---Gk~Kaea~ 78 (286)
T cd01491 2 YSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDI---GKNRAEAS 78 (286)
T ss_pred cccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHh---CHHHHHHH
Confidence 8899754 4456999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE-
Q 007355 427 VKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA- 505 (606)
Q Consensus 427 a~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a- 505 (606)
+++|+++||.++++.+...+ .++++.++|+||+|.|+.+.|..+|++|+++++|+|.+
T Consensus 79 ~~~L~eLNp~V~V~~~~~~~---------------------~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 79 QARLAELNPYVPVTVSTGPL---------------------TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISAD 137 (286)
T ss_pred HHHHHHHCCCCEEEEEeccC---------------------CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 99999999999999986321 23677899999999999999999999999999999998
Q ss_pred ecCCceEEEEEcC
Q 007355 506 ALGFDSFLVMRHG 518 (606)
Q Consensus 506 alG~~g~vv~~~g 518 (606)
..|+.|+++..+|
T Consensus 138 ~~G~~G~vf~dfg 150 (286)
T cd01491 138 TRGLFGSIFCDFG 150 (286)
T ss_pred ccccEEEEEecCC
Confidence 5999999998764
No 33
>PRK14851 hypothetical protein; Provisional
Probab=99.96 E-value=2e-28 Score=279.22 Aligned_cols=153 Identities=18% Similarity=0.140 Sum_probs=141.4
Q ss_pred hhhhhhhhcC-CcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHH
Q 007355 345 NLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (606)
Q Consensus 345 nlry~R~r~l-p~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Ka 423 (606)
..+|.||+.+ ..-+|++|+++||+|+||||+||++|.+|+++|||+|+|+|+|+|+.||+|||++|+.+|+ |++|+
T Consensus 23 ~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dv---G~~Kv 99 (679)
T PRK14851 23 EAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSF---GRPKL 99 (679)
T ss_pred HHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhC---CCHHH
Confidence 5789999754 4456999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC--hHHHHHHHHHHHcCCCe
Q 007355 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKI 501 (606)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~e~R~ll~~~~~~~~~p 501 (606)
++++++|+++||.++|+.+...| +.+++.++++++|+||+|+|+ .+.|.+++..|+++++|
T Consensus 100 ~v~~~~l~~inP~~~I~~~~~~i-----------------~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP 162 (679)
T PRK14851 100 AVMKEQALSINPFLEITPFPAGI-----------------NADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIP 162 (679)
T ss_pred HHHHHHHHHhCCCCeEEEEecCC-----------------ChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 99999999999999999998755 677889999999999999997 57899999999999999
Q ss_pred EEEEe-cCCceEEEEEc
Q 007355 502 TITAA-LGFDSFLVMRH 517 (606)
Q Consensus 502 ~I~aa-lG~~g~vv~~~ 517 (606)
+|+++ .|+.|++.++.
T Consensus 163 ~i~~g~~G~~g~~~~~~ 179 (679)
T PRK14851 163 VITAGPLGYSSAMLVFT 179 (679)
T ss_pred EEEeecccccceEEEEc
Confidence 99984 89999988764
No 34
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.96 E-value=4e-28 Score=263.11 Aligned_cols=181 Identities=22% Similarity=0.299 Sum_probs=152.1
Q ss_pred cEEEECCChHHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GV-----g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
||+||||||+||+++++|+++|| |+|+|+|.|+|+.|||+||+||+.+|+ |++||++|+++++++||+++++
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dI---Gk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDV---GKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHc---CcHHHHHHHHHHHHHCCCCEEE
Confidence 69999999999999999999999 999999999999999999999999999 9999999999999999999999
Q ss_pred EEecccCCCCCCCCCccccccccChhh--HHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEe-cCCceEEEEEc
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRR--LTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA-LGFDSFLVMRH 517 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~--l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aa-lG~~g~vv~~~ 517 (606)
++...+ + .+.++ -.++++++|+|++|+|+.++|.++++.|+.+++|+|+++ .|+.|++.+..
T Consensus 78 a~~~~v-------~--------~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~i 142 (435)
T cd01490 78 ALQNRV-------G--------PETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVI 142 (435)
T ss_pred EEeccc-------C--------hhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEe
Confidence 998655 0 01111 157789999999999999999999999999999999984 99999987653
Q ss_pred CCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcccc-ccccHHHHHHHHHHHH
Q 007355 518 GPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV-TRPGLAPIASALAVEL 596 (606)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV-~~Pgv~~ias~~AvEl 596 (606)
+..+.||.|... .|..+ -+.||+ ..|..-..+-..|.++
T Consensus 143 ---------------------------------P~~te~y~~~~~-p~~~~------~P~Ctl~~~P~~~eHcI~wA~~~ 182 (435)
T cd01490 143 ---------------------------------PHLTESYSSSRD-PPEKS------IPLCTLKNFPNAIEHTIQWARDE 182 (435)
T ss_pred ---------------------------------CCCCCCccCCCC-CCCCC------CCCccccCCCCCchHHHHHHHHH
Confidence 234679999831 22222 258996 5588778888888888
Q ss_pred HHHHccCC
Q 007355 597 FVGVLHHP 604 (606)
Q Consensus 597 l~~ll~~p 604 (606)
+..++..+
T Consensus 183 F~~lF~~~ 190 (435)
T cd01490 183 FEGLFKQP 190 (435)
T ss_pred HHHHhccc
Confidence 77776543
No 35
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.4e-28 Score=259.35 Aligned_cols=185 Identities=22% Similarity=0.344 Sum_probs=155.7
Q ss_pred hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcE
Q 007355 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (606)
Q Consensus 359 q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~ 438 (606)
++++++.|||||||||+||++.++|++.|+++|+|||-|+|+.||||||+||+.+|+ |++||.+|++..++.||.++
T Consensus 7 ~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhV---gqsKA~vA~~~v~~Fnpn~~ 83 (603)
T KOG2013|consen 7 HEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHV---GQSKATVAAKAVKQFNPNIK 83 (603)
T ss_pred HHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhc---CchHHHHHHHHHHHhCCCCc
Confidence 578899999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE-ecCCceEEEEEc
Q 007355 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDSFLVMRH 517 (606)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a-alG~~g~vv~~~ 517 (606)
+..+..+| .+.+...++++++|+|++|.||+++|.++|++|.....|+|.. .-||.||+.++-
T Consensus 84 l~~yhanI----------------~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii 147 (603)
T KOG2013|consen 84 LVPYHANI----------------KEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVII 147 (603)
T ss_pred eEeccccc----------------cCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEe
Confidence 99999877 2345567889999999999999999999999999999999986 589999986442
Q ss_pred CCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcCCCCCCCCCCcccCcccc-ccccHHHHHHHHHH-H
Q 007355 518 GPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVVAPTDSTANRTLDQQCTV-TRPGLAPIASALAV-E 595 (606)
Q Consensus 518 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~ap~~s~~~rtldq~ctV-~~Pgv~~ias~~Av-E 595 (606)
.+.+-||.|..--.| || -..||+ .+|.--+.+-..|- -
T Consensus 148 ---------------------------------~GkTECyeC~pK~~~------kT-ypvCTIRstPS~~iHCIVWAK~~ 187 (603)
T KOG2013|consen 148 ---------------------------------KGKTECYECIPKPVP------KT-YPVCTIRSTPSEPIHCIVWAKHY 187 (603)
T ss_pred ---------------------------------cCCcceecccCCCCC------Cc-CCceEeecCCCCceeeeeehHhH
Confidence 134569999943222 23 368886 45665555555665 3
Q ss_pred HHHHHcc
Q 007355 596 LFVGVLH 602 (606)
Q Consensus 596 ll~~ll~ 602 (606)
++..|++
T Consensus 188 lF~qlF~ 194 (603)
T KOG2013|consen 188 LFNQLFG 194 (603)
T ss_pred HHHHHhc
Confidence 4445543
No 36
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.95 E-value=9.8e-27 Score=217.21 Aligned_cols=132 Identities=31% Similarity=0.361 Sum_probs=122.1
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
||+|+||||+||++|++|+++|+++|+|+|+|.|+++|++||++++.+|+ |++|+++++++++++||.++++.+...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~v---G~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI---GKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHC---CChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 69999999999999999999999999999999999999999999999999 999999999999999999999999865
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEe-cCCceEEEEEc
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA-LGFDSFLVMRH 517 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aa-lG~~g~vv~~~ 517 (606)
+ +.....++++++|+||+|+|+.+.|+.++++|+++++|+|+++ .|+.|++....
T Consensus 78 ~-----------------~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 78 I-----------------SEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred c-----------------ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 4 3334478889999999999999999999999999999999984 88899887654
No 37
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.94 E-value=1.7e-26 Score=232.99 Aligned_cols=131 Identities=23% Similarity=0.253 Sum_probs=122.0
Q ss_pred CcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhC
Q 007355 355 PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF 434 (606)
Q Consensus 355 p~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~in 434 (606)
++.+|++|++++|+|+|+||+||++|++|+++||++|+|+|+|.|+.+|++||++++.+|+ |++|+++++++|+++|
T Consensus 2 G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~di---G~~Kae~~~~~l~~in 78 (231)
T cd00755 2 GEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTV---GKPKVEVMAERIRDIN 78 (231)
T ss_pred CHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhC---CCcHHHHHHHHHHHHC
Confidence 3456899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 435 P~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
|+++++.+...+ +.++..+++. ++|+||+|+|+.++|..++++|+.+++|+|.+
T Consensus 79 P~~~V~~~~~~i-----------------~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 79 PECEVDAVEEFL-----------------TPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred CCcEEEEeeeec-----------------CHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 999999987654 5567777774 69999999999999999999999999999986
No 38
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.94 E-value=2.5e-26 Score=235.93 Aligned_cols=140 Identities=19% Similarity=0.213 Sum_probs=128.8
Q ss_pred hhhhhhhcC-CcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHH
Q 007355 346 LKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (606)
Q Consensus 346 lry~R~r~l-p~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kae 424 (606)
.||.|+.++ +.-+|++|++++|+|+|+||+||++|++|+++||++|+|+|.|.|+.+|++||+++..+|+ |++||+
T Consensus 11 ~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~v---G~~Kve 87 (268)
T PRK15116 11 QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNV---GLAKAE 87 (268)
T ss_pred HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhc---ChHHHH
Confidence 589999754 5567999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHcCCCeEE
Q 007355 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (606)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I 503 (606)
++++++.++||.++++.+...+ +.++..+++. ++|+||+|+|+..++..++++|+.+++|+|
T Consensus 88 ~~~~rl~~INP~~~V~~i~~~i-----------------~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I 150 (268)
T PRK15116 88 VMAERIRQINPECRVTVVDDFI-----------------TPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLV 150 (268)
T ss_pred HHHHHHHhHCCCcEEEEEeccc-----------------ChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEE
Confidence 9999999999999999886433 5667777774 799999999999999999999999999999
Q ss_pred EE
Q 007355 504 TA 505 (606)
Q Consensus 504 ~a 505 (606)
.+
T Consensus 151 ~~ 152 (268)
T PRK15116 151 TT 152 (268)
T ss_pred EE
Confidence 86
No 39
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.93 E-value=1.2e-25 Score=244.40 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=139.3
Q ss_pred hhhhhh-cCCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHH
Q 007355 347 KLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMA 425 (606)
Q Consensus 347 ry~R~r-~lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaea 425 (606)
||+||. +++.-||++|.+++|+|+|+||+||+++++|++.|||+|||+|+|.|+.+|++||++++.+|+ |++||++
T Consensus 2 rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~di---Gk~kA~~ 78 (425)
T cd01493 2 KYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSL---GKSRAEA 78 (425)
T ss_pred cchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhc---CcHHHHH
Confidence 899995 666678999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 426 AVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 426 aa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
++++|+++||+|+++.+..++ ..-.+...+++.++|+||.+.++...+..++.+|+.+++|+|.+
T Consensus 79 ~~~~L~eLNp~V~i~~~~e~~---------------~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~ 143 (425)
T cd01493 79 TCELLQELNPDVNGSAVEESP---------------EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYV 143 (425)
T ss_pred HHHHHHHHCCCCEEEEEeccc---------------chhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999999886543 11123446889999999999999999999999999999999988
Q ss_pred -ecCCceEEEEEcC
Q 007355 506 -ALGFDSFLVMRHG 518 (606)
Q Consensus 506 -alG~~g~vv~~~g 518 (606)
..|+.|++.+..+
T Consensus 144 ~s~G~~G~v~v~~~ 157 (425)
T cd01493 144 RSYGLYGYIRIQLK 157 (425)
T ss_pred ecccCEEEEEEEEC
Confidence 6999999987765
No 40
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-25 Score=228.48 Aligned_cols=138 Identities=26% Similarity=0.336 Sum_probs=123.6
Q ss_pred hhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCc
Q 007355 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV 437 (606)
Q Consensus 358 ~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v 437 (606)
+++-+.++||||||||||||++.++|+..|++.|.++|-|+++.+|||||+||+.+|+ |++||++||+.+.+..|+.
T Consensus 34 ~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~Di---G~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 34 NLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDI---GEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred HHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhccccccc---CchhHHHHHHHHHhhCCCc
Confidence 3567778999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred EEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcC---C-------CeEEEEe-
Q 007355 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT---N-------KITITAA- 506 (606)
Q Consensus 438 ~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~---~-------~p~I~aa- 506 (606)
.|..+..+| .+.-.++.+++|+|++..|+.++|.++|.+..+. | +|+|+++
T Consensus 111 ~v~~h~~kI------------------qd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGt 172 (422)
T KOG2015|consen 111 VVVPHRQKI------------------QDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGT 172 (422)
T ss_pred EEeeeecch------------------hcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCc
Confidence 999988766 3444678899999999999999999999875532 2 5999985
Q ss_pred cCCceEEEEE
Q 007355 507 LGFDSFLVMR 516 (606)
Q Consensus 507 lG~~g~vv~~ 516 (606)
.||.|++-+.
T Consensus 173 EG~KG~arvI 182 (422)
T KOG2015|consen 173 EGFKGHARVI 182 (422)
T ss_pred ccccceeEEE
Confidence 8999998644
No 41
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.92 E-value=1.1e-24 Score=257.12 Aligned_cols=150 Identities=20% Similarity=0.240 Sum_probs=138.0
Q ss_pred hhhhhhhcC-CcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHH
Q 007355 346 LKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (606)
Q Consensus 346 lry~R~r~l-p~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kae 424 (606)
.+|+||+.+ +..+|++|++++|||+||||||+++|++|+++|||+|+|+|+|.|+.+|++||++++.+|+ |++||+
T Consensus 5 ~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dI---Gk~Kae 81 (1008)
T TIGR01408 5 ALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDV---GRNRAE 81 (1008)
T ss_pred hhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHc---CchHHH
Confidence 479999755 4446999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCC--CeE
Q 007355 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTN--KIT 502 (606)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~--~p~ 502 (606)
+++++|+++||.|+++.+...+ + +++++++|+||+|.|+.+.|..+|++|+.++ +|+
T Consensus 82 a~~~~L~eLNp~V~V~~~~~~l-----------------~----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~f 140 (1008)
T TIGR01408 82 AVVKKLAELNPYVHVSSSSVPF-----------------N----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAF 140 (1008)
T ss_pred HHHHHHHHHCCCceEEEecccC-----------------C----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999986433 2 3588999999999999999999999999999 889
Q ss_pred EEE-ecCCceEEEEEcCC
Q 007355 503 ITA-ALGFDSFLVMRHGP 519 (606)
Q Consensus 503 I~a-alG~~g~vv~~~g~ 519 (606)
|.+ ..|+.|+++...|.
T Consensus 141 I~~~~~G~~G~vf~D~g~ 158 (1008)
T TIGR01408 141 ISADVRGLFGSLFCDFGD 158 (1008)
T ss_pred EEEeecceEEEEEecCCC
Confidence 988 69999999988764
No 42
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.92 E-value=3.7e-24 Score=217.07 Aligned_cols=190 Identities=16% Similarity=0.139 Sum_probs=140.4
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCC-----C-----eEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHH
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGV-----R-----KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLE 431 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GV-----g-----~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~ 431 (606)
-+..||+||||||+||+++++|+++|+ | +|+++|+|+|+.+|++|| +|..+|+ |++||+++++++.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dV---G~~Ka~v~~~ri~ 84 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADV---GQNKAIVLVNRLN 84 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHC---CcHHHHHHHHHHH
Confidence 367899999999999999999999973 4 999999999999999999 6788999 9999999999999
Q ss_pred hhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHc--C-CCeEEEEe-c
Q 007355 432 RIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN--T-NKITITAA-L 507 (606)
Q Consensus 432 ~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~--~-~~p~I~aa-l 507 (606)
+++ +++++++...+ +. .+++.++|+||+|+|+.++|..+++.|.+ . .+|+|+++ -
T Consensus 85 ~~~-~~~i~a~~~~~-----------------~~---~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~ 143 (244)
T TIGR03736 85 QAM-GTDWTAHPERV-----------------ER---SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNR 143 (244)
T ss_pred hcc-CceEEEEEeee-----------------Cc---hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCC
Confidence 998 89999988655 21 23356899999999999999999999988 2 48999986 5
Q ss_pred CCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccCcC-C-CCCCCCCCcccCccc---cc-
Q 007355 508 GFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCNDVV-A-PTDSTANRTLDQQCT---VT- 581 (606)
Q Consensus 508 G~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d~~-a-p~~s~~~rtldq~ct---V~- 581 (606)
+..|++++-.-..... .+ . ..+-+..+.||-|.--. . |.++. +.|| +.
T Consensus 144 ~~~gqv~~g~i~~~~k------------~~-------~-~~~lP~vte~y~~~~d~~~~~~~~~------PsCsla~al~ 197 (244)
T TIGR03736 144 ADDGQVILGQVPSRAK------------GE-------N-RLRLPHVGELFPELIDPSVDPDDDR------PSCSLAEALA 197 (244)
T ss_pred CCCCcEEEEecccccc------------cC-------C-ceecCCchhhCcccccCccCCCCCC------CCchHHHHhc
Confidence 7788887643110000 00 0 01224456788775221 1 23332 4677 22
Q ss_pred --cccHHHHHHHHHHHHHHHHcc
Q 007355 582 --RPGLAPIASALAVELFVGVLH 602 (606)
Q Consensus 582 --~Pgv~~ias~~AvEll~~ll~ 602 (606)
+=.+..+++.+|..+|..|+.
T Consensus 198 ~Q~l~iN~~~a~~~~~~L~~lf~ 220 (244)
T TIGR03736 198 KQSLFINQAIAVFAMNLLWKLFR 220 (244)
T ss_pred CchhHHHHHHHHHHHHHHHHHHh
Confidence 334666677777777776664
No 43
>PRK06153 hypothetical protein; Provisional
Probab=99.92 E-value=1.5e-24 Score=230.73 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=116.2
Q ss_pred hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCc-CCCcchhcCCCC--hHHHHHHHHHHhhCC
Q 007355 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQS-LYTLDDCLNGGD--FKAMAAVKSLERIFP 435 (606)
Q Consensus 359 q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~-L~~~~Di~~~G~--~Kaeaaa~~L~~inP 435 (606)
|++|+++||+||||||+||+++..|++.||++|+|||.|.|+.+|++||+ +|+.+|+ |+ +||+++++++.+++|
T Consensus 171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~Dv---Gk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 171 SAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEEL---REAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHc---CCcchHHHHHHHHHHHhCC
Confidence 79999999999999999999999999999999999999999999999998 6789999 88 999999999999998
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEecCCc
Q 007355 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFD 510 (606)
Q Consensus 436 ~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aalG~~ 510 (606)
.+ +.+...| +.+++. .+.++|+||+|+|+.++|.++++.|.++++|+|++++|..
T Consensus 248 ~I--~~~~~~I-----------------~~~n~~-~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~ 302 (393)
T PRK06153 248 GI--VPHPEYI-----------------DEDNVD-ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLE 302 (393)
T ss_pred eE--EEEeecC-----------------CHHHHH-HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeecce
Confidence 54 4554333 555554 5689999999999999999999999999999999976643
No 44
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.91 E-value=2.5e-24 Score=214.06 Aligned_cols=141 Identities=21% Similarity=0.251 Sum_probs=129.7
Q ss_pred hhhhhhhh-cCCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHH
Q 007355 345 NLKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (606)
Q Consensus 345 nlry~R~r-~lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Ka 423 (606)
+.||.|.. ++++-++++|++++|+|+|+||+||.+++.|+|.|||+|+|+|.|.|+.+|+|||.-....++ |++|+
T Consensus 10 ~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~i---Gk~Kv 86 (263)
T COG1179 10 RQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDI---GKPKV 86 (263)
T ss_pred HHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhc---ccHHH
Confidence 44666664 456667899999999999999999999999999999999999999999999999999888999 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHcCCCeE
Q 007355 424 MAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKIT 502 (606)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~e~R~ll~~~~~~~~~p~ 502 (606)
++++++++.|||.++|.++..-+ +.+++++++. ++|+||||.|+..+...+-.+|+.+++|+
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~-----------------t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~v 149 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFI-----------------TEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPV 149 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhh-----------------CHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCE
Confidence 99999999999999999998644 8899999876 59999999999999999999999999999
Q ss_pred EEE
Q 007355 503 ITA 505 (606)
Q Consensus 503 I~a 505 (606)
|..
T Consensus 150 Iss 152 (263)
T COG1179 150 ISS 152 (263)
T ss_pred Eee
Confidence 975
No 45
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.5e-24 Score=238.90 Aligned_cols=190 Identities=20% Similarity=0.248 Sum_probs=158.8
Q ss_pred cccceEec---CCcccceE----ecccCCCChh--h-hhhhhHHhhhhhhhhhcCCcch-hhhhcCCcEEEECCChHHHH
Q 007355 310 NTVGWELN---KGRKVPRC----ISLAKSMDPT--R-LAISAADLNLKLMRWRQLPSLN-LDILSSRKCLLLGAGTLGCQ 378 (606)
Q Consensus 310 ~~~gwe~~---~gkl~p~~----~dl~~~~dp~--~-la~~a~dlnlry~R~r~lp~~~-q~~L~~~kVllvGaGgLGs~ 378 (606)
+++++|.- +||+.|.. +|--+++... . -.+.....+.||+-|+.+-+.+ |+||.+.|+.+||||++||+
T Consensus 365 G~vaQEvlKa~sgKF~PL~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE 444 (1013)
T KOG2012|consen 365 GIVAQEVLKACSGKFTPLKQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCE 444 (1013)
T ss_pred hhhHHHHHHhhccCccchhHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHHhhCcEEEEccchhhHH
Confidence 45666643 89999974 5554444210 1 1244556788999998773334 89999999999999999999
Q ss_pred HHHHHHHhCC-----CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecccCCCCCCC
Q 007355 379 VARMLMAWGV-----RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPV 453 (606)
Q Consensus 379 vA~~La~~GV-----g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~ 453 (606)
..+|++.+|| |+|++.|.|.+|.|||+||+||+..|+ |++|+++||++...+||.++|+++..++
T Consensus 445 ~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dV---gk~KSe~AA~A~~~mNp~l~I~a~~~rv------- 514 (1013)
T KOG2012|consen 445 LLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDV---GKPKSEVAAAAARGMNPDLNIIALQNRV------- 514 (1013)
T ss_pred HHHhhhheeeccCCCCceEEeccchhhhccccceeecccccc---CchHHHHHHHHHHhcCCCceeeehhhcc-------
Confidence 9999999999 589999999999999999999999999 9999999999999999999999998776
Q ss_pred CCccccccccChhhH--HHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE-ecCCce--EEEEEc
Q 007355 454 PCQEEDSVLDDCRRL--TDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGFDS--FLVMRH 517 (606)
Q Consensus 454 ~~~~~~~~~~~~~~l--~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a-alG~~g--~vv~~~ 517 (606)
+ .+.|.+ ++++++-|+|.++.||.++|.+++.-|..+.||++.+ .+|..| +|++-|
T Consensus 515 g--------peTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPh 575 (1013)
T KOG2012|consen 515 G--------PETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPH 575 (1013)
T ss_pred C--------cccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEecc
Confidence 1 133333 6889999999999999999999999999999999986 599977 456655
No 46
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.89 E-value=3.3e-23 Score=208.20 Aligned_cols=213 Identities=22% Similarity=0.312 Sum_probs=170.7
Q ss_pred hhhhhHHhhhhhhhhhcCCcch----hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCc
Q 007355 337 LAISAADLNLKLMRWRQLPSLN----LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTL 412 (606)
Q Consensus 337 la~~a~dlnlry~R~r~lp~~~----q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~ 412 (606)
+..+.+|-| .|+|-+.+-.+| -+||+...|+|+|.||+||-+|..|.|+|+|++.|+|+|+|+..|++|-+ |..
T Consensus 52 lSsEVVDSN-PYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P 129 (422)
T KOG2336|consen 52 LSSEVVDSN-PYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQP 129 (422)
T ss_pred hhhhHhcCC-hHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCc
Confidence 455667766 588876655554 48999999999999999999999999999999999999999999999964 688
Q ss_pred chhcCCCChHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhh-----------ccCCEEEEe
Q 007355 413 DDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLI-----------LSHDVIFLL 481 (606)
Q Consensus 413 ~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li-----------~~~DvV~~~ 481 (606)
+.. |..|+++|+..|..|||+|.++.++..| .+.++.+.+. +..|+|+.|
T Consensus 130 ~Qa---GlsKv~AA~~TL~~iNPDV~iE~hn~NI----------------TTvenFd~F~~~is~g~~~~gkpvDLVLSC 190 (422)
T KOG2336|consen 130 DQA---GLSKVDAAVQTLAEINPDVVIEVHNYNI----------------TTVENFDTFTDRISNGSLCPGKPVDLVLSC 190 (422)
T ss_pred ccc---cchHHHHHHHHHHhcCCCeEEEEeecce----------------eeehhHHHHHHHhhcCCCCCCCcceEEeee
Confidence 888 9999999999999999999999999877 2444444443 237999999
Q ss_pred CCChHHHHHHHHHHHcCCCeEEEEe---cCCceEEEEEcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCccc
Q 007355 482 TDTRESRWLPTLLCANTNKITITAA---LGFDSFLVMRHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYF 558 (606)
Q Consensus 482 tDs~e~R~ll~~~~~~~~~p~I~aa---lG~~g~vv~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~ 558 (606)
.|+.|+|..+|..|...+..++..+ -...|++... .++.++|+.
T Consensus 191 VDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i---------------------------------~PGetACFA 237 (422)
T KOG2336|consen 191 VDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLI---------------------------------VPGETACFA 237 (422)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEe---------------------------------cCCccceec
Confidence 9999999999999999998887543 3345555432 246788999
Q ss_pred ccCcCCCCCCCCCCccc--Cccccccc-cHHHHHHHHHHHHHHHHccC
Q 007355 559 CNDVVAPTDSTANRTLD--QQCTVTRP-GLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 559 C~d~~ap~~s~~~rtld--q~ctV~~P-gv~~ias~~AvEll~~ll~~ 603 (606)
|.....-......|||. ..|...-| ..+++|+.+....|+.||..
T Consensus 238 CaPPlVVAs~IDErTLKReGVCAASLPTTMgvvAG~LVqN~LK~LLNF 285 (422)
T KOG2336|consen 238 CAPPLVVASGIDERTLKREGVCAASLPTTMGVVAGFLVQNSLKFLLNF 285 (422)
T ss_pred ccCceeeecCcchhhhhhcceeeecCcchHHHHHHHHHHHHHHHHhhc
Confidence 98332112334456764 57997666 47899999999999999864
No 47
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.84 E-value=7.4e-21 Score=191.11 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=90.5
Q ss_pred hhhhhhhhcC-CcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHH
Q 007355 345 NLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA 423 (606)
Q Consensus 345 nlry~R~r~l-p~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Ka 423 (606)
..||+||+.+ +..+|++|++++|+|+|+||||+++|++|+++|||+|+|+|+|.|+.+|++||++++. |+ |++||
T Consensus 6 ~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dv---Gk~KA 81 (287)
T PTZ00245 6 AVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EA---GGTRG 81 (287)
T ss_pred HHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-cc---CCcHH
Confidence 4689999754 4456999999999999999999999999999999999999999999999999999996 67 99999
Q ss_pred HHHHHHHHhhCCCcEEEEEeccc
Q 007355 424 MAAVKSLERIFPAVAAEGVVMAI 446 (606)
Q Consensus 424 eaaa~~L~~inP~v~v~~~~~~I 446 (606)
++++++|+++||.++|+.+...+
T Consensus 82 eaAa~~L~eLNP~V~V~~i~~rl 104 (287)
T PTZ00245 82 ARALGALQRLNPHVSVYDAVTKL 104 (287)
T ss_pred HHHHHHHHHHCCCcEEEEccccc
Confidence 99999999999999999987544
No 48
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.6e-20 Score=188.60 Aligned_cols=162 Identities=20% Similarity=0.255 Sum_probs=144.6
Q ss_pred hhhhhhhhHHhhhhhhhhhcCCcch-hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCc
Q 007355 334 PTRLAISAADLNLKLMRWRQLPSLN-LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTL 412 (606)
Q Consensus 334 p~~la~~a~dlnlry~R~r~lp~~~-q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~ 412 (606)
-..+.++... -|+||+.+++++ |++|+++||||+|.+|+|.++|++|+.+||++++++|.-.|....++-|+|+..
T Consensus 3 ~~else~E~a---lYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~ 79 (331)
T KOG2014|consen 3 GEELSEQEIA---LYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISA 79 (331)
T ss_pred hhhhhHHHHH---HHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEch
Confidence 3445555444 499998887776 899999999999999999999999999999999999999999999999999999
Q ss_pred chhcCCCChHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHH
Q 007355 413 DDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPT 492 (606)
Q Consensus 413 ~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~ 492 (606)
+++ |+.||++..++++.+||.|++.....++ .+.-++++.++|+|+..--+++.+--+|
T Consensus 80 ~~v---g~~raeas~erl~~LNPmV~v~~d~edl------------------~ek~eeff~qFdlVV~~~~s~e~~~kvn 138 (331)
T KOG2014|consen 80 SSV---GQTRAEASLERLQDLNPMVDVSVDKEDL------------------SEKDEEFFTQFDLVVATDQSREEKCKVN 138 (331)
T ss_pred hhh---chHHHHHHHHHHHhcCCceEEEechhhh------------------hhcchhhhhceeEEEEeccchhhhhhHH
Confidence 999 9999999999999999999999876554 3344889999999999999999999999
Q ss_pred HHHHcCCCeEEEE-ecCCceEEEEEcCC
Q 007355 493 LLCANTNKITITA-ALGFDSFLVMRHGP 519 (606)
Q Consensus 493 ~~~~~~~~p~I~a-alG~~g~vv~~~g~ 519 (606)
.+|++++++++.+ ..|+.||.+...+.
T Consensus 139 ~icrk~~i~F~a~d~~g~~Gy~F~dL~~ 166 (331)
T KOG2014|consen 139 EICRKLNIAFYAGDCFGLCGYAFADLQE 166 (331)
T ss_pred HHHHhcCceEEeccccceeeeeeeehhh
Confidence 9999999999987 58999998876553
No 49
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.6e-19 Score=179.77 Aligned_cols=137 Identities=26% Similarity=0.306 Sum_probs=123.4
Q ss_pred cCCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHh
Q 007355 353 QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLER 432 (606)
Q Consensus 353 ~lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~ 432 (606)
.+++.+++||++.=|+||||||+||.|+..|+|.||++|.+||+|.|+.|.||||...+..|+ |.||+.++++++++
T Consensus 63 FfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DV---G~PK~~clkkh~sk 139 (430)
T KOG2018|consen 63 FFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADV---GTPKVMCLKKHFSK 139 (430)
T ss_pred hhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhc---CCchHHHHHHHHHh
Confidence 457778999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhh-ccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE-ecCC
Q 007355 433 IFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLI-LSHDVIFLLTDTRESRWLPTLLCANTNKITITA-ALGF 509 (606)
Q Consensus 433 inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li-~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a-alG~ 509 (606)
|.|.+++.+.++-. +.++.++++ .+-|+|+||.||.++..-+-.+|..+++++|.+ +.+.
T Consensus 140 iaPw~eIdar~~l~-----------------~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Gaaa 201 (430)
T KOG2018|consen 140 IAPWCEIDARNMLW-----------------TSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAA 201 (430)
T ss_pred hCccceecHHHhhc-----------------CCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccc
Confidence 99999999887533 445555554 568999999999999999999999999999976 4443
No 50
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.2e-17 Score=185.08 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=139.0
Q ss_pred HHhhhhhhhhhcC-CcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCC
Q 007355 342 ADLNLKLMRWRQL-PSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD 420 (606)
Q Consensus 342 ~dlnlry~R~r~l-p~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~ 420 (606)
.|.++ |+||+.+ +.-..++|.+++|||.|+||||-+||+||+.+||+++||.|...+..++|..|++++++|| |+
T Consensus 15 IDE~L-YSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di---gk 90 (1013)
T KOG2012|consen 15 IDESL-YSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI---GK 90 (1013)
T ss_pred hhhhh-hhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc---CC
Confidence 45443 9999854 5555799999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCC
Q 007355 421 FKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNK 500 (606)
Q Consensus 421 ~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~ 500 (606)
++|++..++|+++|+.|.|..+.. ...+++++++++|+.+--+.+...-++++|+++++
T Consensus 91 nRA~as~~~LaeLN~yV~V~v~t~---------------------~~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i 149 (1013)
T KOG2012|consen 91 NRAEASVEKLAELNNYVPVVVLTG---------------------PLTEEFLSDFQVVVLTDASLEEQLKINDFCHSHGI 149 (1013)
T ss_pred chHHHHHHHHHHhhcceeeEEecC---------------------cccHHHHhCCcEEEEecCchHHHHHHHHHHHhcCe
Confidence 999999999999999999998753 22378899999999999999999999999999999
Q ss_pred eEEEE-ecCCceEEEEEcCC
Q 007355 501 ITITA-ALGFDSFLVMRHGP 519 (606)
Q Consensus 501 p~I~a-alG~~g~vv~~~g~ 519 (606)
.+|.+ .-|..|+++...|.
T Consensus 150 ~fi~ad~RGLfg~lFCDFG~ 169 (1013)
T KOG2012|consen 150 AFIAADTRGLFGQLFCDFGE 169 (1013)
T ss_pred EEEEeccchhhhhhhccCCC
Confidence 99988 68999999999885
No 51
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1e-16 Score=170.09 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=136.3
Q ss_pred hhhhhhh-cCCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHH
Q 007355 346 LKLMRWR-QLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAM 424 (606)
Q Consensus 346 lry~R~r-~lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kae 424 (606)
.||+||. ++++.||..|..++|.++|||++||+++++|+..|||.||+||...|+.++++.+++...+++ |++||+
T Consensus 8 ~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~---GksrA~ 84 (523)
T KOG2016|consen 8 TKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSI---GKSRAE 84 (523)
T ss_pred hHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhh---chhHHH
Confidence 4899995 778899999999999999999999999999999999999999999999999999999888888 999999
Q ss_pred HHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEE
Q 007355 425 AAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (606)
Q Consensus 425 aaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~ 504 (606)
+..+.|+++||.|+......+ ...-..+...++.++++|+.+-=+.++...+.++|+.+++|+++
T Consensus 85 a~~e~LqeLN~~V~~~~vee~---------------p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~ 149 (523)
T KOG2016|consen 85 ATLEFLQELNPSVSGSFVEES---------------PDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLL 149 (523)
T ss_pred HHHHHHHHhChhhhcCccccC---------------hhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEE
Confidence 999999999999987776432 12234455778899999998888888888999999999999999
Q ss_pred E-ecCCceEEEEE
Q 007355 505 A-ALGFDSFLVMR 516 (606)
Q Consensus 505 a-alG~~g~vv~~ 516 (606)
. .+|+.|++.+.
T Consensus 150 ~rs~Gl~G~iRI~ 162 (523)
T KOG2016|consen 150 TRSYGLAGTIRIS 162 (523)
T ss_pred EeeecceEEEEEE
Confidence 8 79999998643
No 52
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.56 E-value=4.4e-14 Score=157.36 Aligned_cols=172 Identities=15% Similarity=0.144 Sum_probs=128.9
Q ss_pred hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcE
Q 007355 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (606)
Q Consensus 359 q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~ 438 (606)
-++.+++||+|+|.|++|+.++..|++.|+++|..||.|.+ .+|++| + |+. ++.|++ .+|+++
T Consensus 124 F~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------I---gEl-~e~A~~----~n~~v~ 186 (637)
T TIGR03693 124 FELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------I---HEL-AEIAEE----TDDALL 186 (637)
T ss_pred hhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------H---HHH-HHHHHH----hCCCCc
Confidence 36679999999999999999999999999999999999999 999999 6 777 666665 899999
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh--HHHHHHHHHHHcCCCeEEEE-ecCCceEEEE
Q 007355 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTNKITITA-ALGFDSFLVM 515 (606)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--e~R~ll~~~~~~~~~p~I~a-alG~~g~vv~ 515 (606)
++.+.. ...+.+.+.++.+|+|+..+|+. +.-..+|..|.+.|+++|=+ ..|..+.+-.
T Consensus 187 v~~i~~------------------~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGP 248 (637)
T TIGR03693 187 VQEIDF------------------AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGP 248 (637)
T ss_pred eEeccC------------------CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecc
Confidence 998753 24678889999999999999944 44567999999999776644 3444333221
Q ss_pred EcCCCCCcccccccchhccCccccccccCCCCCCCCCCCCcccccC-cCC--CCCCCCCCcccCcccccccc-HHHHHHH
Q 007355 516 RHGPGPFSITHDVKTEAVNGLSADMDNLGLNNRDGGQRLGCYFCND-VVA--PTDSTANRTLDQQCTVTRPG-LAPIASA 591 (606)
Q Consensus 516 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgCy~C~d-~~a--p~~s~~~rtldq~ctV~~Pg-v~~ias~ 591 (606)
.. .+++.||+.|.- ... .-+. .+ .. ...+|. .+|+|.+
T Consensus 249 lf--------------------------------tPgkTGCWeCa~~RL~e~~L~~--~~---~s-~a~sPat~AmlAnv 290 (637)
T TIGR03693 249 VF--------------------------------QQHGDECFEAAWHRLHESALHE--EN---SL-AAFPLAGKAMLANI 290 (637)
T ss_pred eE--------------------------------CCCCCcHHHHHHHHHHHHhcCC--CC---cc-cccCHHHHHHHHHH
Confidence 11 134789999931 100 0000 11 11 345565 7888888
Q ss_pred HHHHHHHHHccC
Q 007355 592 LAVELFVGVLHH 603 (606)
Q Consensus 592 ~AvEll~~ll~~ 603 (606)
++.|+++.+++.
T Consensus 291 iv~ElfK~ITg~ 302 (637)
T TIGR03693 291 IVFELFKAAADD 302 (637)
T ss_pred HHHHHHHHHhcc
Confidence 899999999964
No 53
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.19 E-value=5.6e-06 Score=77.08 Aligned_cols=81 Identities=23% Similarity=0.337 Sum_probs=63.1
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
..+++++|+|+|+||.|..++.+|...|+++|+++.. -..|++.+++.+ +...+
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------------------t~~ra~~l~~~~----~~~~~ 61 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------------------TPERAEALAEEF----GGVNI 61 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------------------SHHHHHHHHHHH----TGCSE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------------------CHHHHHHHHHHc----Ccccc
Confidence 3688999999999999999999999999999999764 134677777666 44555
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHH
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES 487 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~ 487 (606)
.... .+++.+.+.++|+||.||-....
T Consensus 62 ~~~~---------------------~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 62 EAIP---------------------LEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp EEEE---------------------GGGHCHHHHTESEEEE-SSTTST
T ss_pred ceee---------------------HHHHHHHHhhCCeEEEecCCCCc
Confidence 5553 34555778899999999987654
No 54
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.13 E-value=1.4e-05 Score=86.68 Aligned_cols=98 Identities=21% Similarity=0.226 Sum_probs=73.6
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~ 444 (606)
.+|+|+|||++|+.+|..|++-|.++|++.|.. ..|+..+++.. -+ ++++...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs----------------------~~~~~~i~~~~---~~--~v~~~~v 54 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS----------------------KEKCARIAELI---GG--KVEALQV 54 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC----------------------HHHHHHHHhhc---cc--cceeEEe
Confidence 589999999999999999999999999998762 12332222221 12 5555555
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEe
Q 007355 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA 506 (606)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aa 506 (606)
++ .+.+.+.++|+++|+||+|....-.+ -+-+.|.+.|+++++.+
T Consensus 55 D~----------------~d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts 99 (389)
T COG1748 55 DA----------------ADVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTS 99 (389)
T ss_pred cc----------------cChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcc
Confidence 44 46788899999999999999877666 45667888888888754
No 55
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.04 E-value=1.8e-05 Score=82.87 Aligned_cols=77 Identities=30% Similarity=0.406 Sum_probs=61.3
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
++.++|+|+|+||.|..++..|+..|+++|+|+|.+ ..|++.+++.+.+.++.+.+..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~----------------------~~ka~~la~~l~~~~~~~~~~~ 182 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD----------------------PARAAALADELNARFPAARATA 182 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC----------------------HHHHHHHHHHHHhhCCCeEEEe
Confidence 567899999999999999999999999999998864 3488899999988777654422
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (606)
. +++.+.+.++|+||+||-
T Consensus 183 ~-----------------------~~~~~~~~~aDiVInaTp 201 (284)
T PRK12549 183 G-----------------------SDLAAALAAADGLVHATP 201 (284)
T ss_pred c-----------------------cchHhhhCCCCEEEECCc
Confidence 1 223445678999999974
No 56
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.66 E-value=0.00025 Score=74.41 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=61.1
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
+++++|+|+|+||+|..++..|+..|+.+|++++.+. + ...|++.+++.+.+..+.+.+..
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~--------------~-----~~~~a~~l~~~l~~~~~~~~~~~ 184 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD--------------D-----FYERAEQTAEKIKQEVPECIVNV 184 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------h-----HHHHHHHHHHHHhhcCCCceeEE
Confidence 5678999999999999999999999999999987621 0 12467777777766666554443
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (606)
.. + .+.+.+.+.++.+|+||++|=
T Consensus 185 ~d--~----------------~~~~~~~~~~~~~DilINaTp 208 (289)
T PRK12548 185 YD--L----------------NDTEKLKAEIASSDILVNATL 208 (289)
T ss_pred ec--h----------------hhhhHHHhhhccCCEEEEeCC
Confidence 22 1 123445566777898888873
No 57
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.62 E-value=0.00024 Score=77.04 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=67.6
Q ss_pred EEEECCChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 367 CLLLGAGTLGCQVARMLMAWGVR-KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 367 VllvGaGgLGs~vA~~La~~GVg-~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
|+|+|+|.+|+.+++.|++.+-- ++++.|.+ ..|++.+++.+ ...+++....+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~----------------------~~~~~~~~~~~----~~~~~~~~~~d 54 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRN----------------------PEKAERLAEKL----LGDRVEAVQVD 54 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESS----------------------HHHHHHHHT------TTTTEEEEE--
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECC----------------------HHHHHHHHhhc----cccceeEEEEe
Confidence 79999999999999999999854 99998762 33555555444 23345555544
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
+ .+.+.+.++++++|+||+|.... .-.-+-+.|.+.++.+|+.
T Consensus 55 ~----------------~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 55 V----------------NDPESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp T----------------TTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred c----------------CCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 3 35677999999999999999876 4556778899999999884
No 58
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.60 E-value=0.00026 Score=74.17 Aligned_cols=79 Identities=28% Similarity=0.353 Sum_probs=56.3
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
+++++|+|+|+||.|..++..|+..|+.+|+++|.+ ..|++++++.+.+.++...+..
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------------------~~ka~~La~~~~~~~~~~~~~~ 182 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------------------TSRAQALADVINNAVGREAVVG 182 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------------------HHHHHHHHHHHhhccCcceEEe
Confidence 447899999999999999999999999999998752 2377888887765544432222
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (606)
. +.....+.+..+|+||+||=
T Consensus 183 ~---------------------~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 183 V---------------------DARGIEDVIAAADGVVNATP 203 (283)
T ss_pred c---------------------CHhHHHHHHhhcCEEEEcCC
Confidence 1 11222334467899998874
No 59
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=97.57 E-value=0.00036 Score=66.75 Aligned_cols=117 Identities=25% Similarity=0.257 Sum_probs=92.2
Q ss_pred CCcEEEECCChHHHHHHHHHH---HhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLM---AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La---~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.-.|.|+|||-||--+|..|+ |-|..+|..+|+.+|+..++.---+ -..+ |.+|++-+ ++|.+..|.-.++
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~--Ga~~---GEyKv~Fi-~rl~~~~f~r~V~ 91 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL--GAKV---GEYKVDFI-KRLGRVHFGRRVE 91 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh--CCCc---chhHHHHH-HHhCcCCCCceee
Confidence 346999999999999999998 5689999999999999998753322 2345 99999764 5677778889999
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC---CChHHHHHHHHHHHcCCCeEEEE
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT---DTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t---Ds~e~R~ll~~~~~~~~~p~I~a 505 (606)
+++..| +.+++..+.. |+|+-|. |+...-..+-.+|++.|+.-|+.
T Consensus 92 a~pE~i-----------------t~dNlhll~g--DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 92 AFPENI-----------------TKDNLHLLKG--DVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred cccccc-----------------cccchhhhcC--CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 988655 6777766544 7777664 66677777888999999988864
No 60
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.48 E-value=0.00042 Score=72.82 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=57.4
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
+++++|+|+|+||.+..|+..|+..|+++|+|++.+. + ...|++.+++.+....+ ..+..
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~--------------~-----~~~ka~~la~~~~~~~~-~~~~~ 181 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD--------------E-----FFDKALAFAQRVNENTD-CVVTV 181 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc--------------c-----HHHHHHHHHHHhhhccC-ceEEE
Confidence 5678999999999999999999999999999987521 0 24588888887765432 22222
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT 482 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t 482 (606)
... .+.+.+.+.+.++|+||+||
T Consensus 182 ~~~------------------~~~~~l~~~~~~aDivINaT 204 (288)
T PRK12749 182 TDL------------------ADQQAFAEALASADILTNGT 204 (288)
T ss_pred ech------------------hhhhhhhhhcccCCEEEECC
Confidence 210 01122344556789999987
No 61
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.41 E-value=0.00046 Score=72.17 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=55.8
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
+++++|+|+|+||.|..++..|+..|+++|++++.+ ..|++.+++.+.... .+..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt----------------------~~ka~~La~~~~~~~---~~~~ 177 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN----------------------PDKLSRLVDLGVQVG---VITR 177 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC----------------------HHHHHHHHHHhhhcC---ccee
Confidence 568899999999999999999999999999998652 236777777654321 1111
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (606)
.. ..+.+...+.++|+||+||-.
T Consensus 178 ~~--------------------~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 178 LE--------------------GDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred cc--------------------chhhhhhcccCCCEEEECCCC
Confidence 10 113334556789999999854
No 62
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.25 E-value=0.0017 Score=64.74 Aligned_cols=92 Identities=14% Similarity=0.146 Sum_probs=62.5
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.|++++|+|||+|.+|...++.|...| .+|++|+.+. . +.+ ..++ .+ -.+.
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~-------~~l--------~~l~---~~----~~i~ 57 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T-------ENL--------VKLV---EE----GKIR 57 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C-------HHH--------HHHH---hC----CCEE
Confidence 488999999999999999999999999 7899986531 0 011 1111 11 1122
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEE
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I 503 (606)
...... . ...+.++|+||.|||+.+.-..+...| ..++++-
T Consensus 58 ~~~~~~-----------------~----~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn 98 (202)
T PRK06718 58 WKQKEF-----------------E----PSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFN 98 (202)
T ss_pred EEecCC-----------------C----hhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEE
Confidence 222110 1 234678999999999999888888888 4566543
No 63
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.00086 Score=70.26 Aligned_cols=52 Identities=23% Similarity=0.336 Sum_probs=45.8
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP 435 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP 435 (606)
+++++|+|+|+||.+..|+..|+..|+.+|+++.. -..|++.+++.+.+..+
T Consensus 124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR----------------------t~~ra~~La~~~~~~~~ 175 (283)
T COG0169 124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNR----------------------TRERAEELADLFGELGA 175 (283)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC----------------------CHHHHHHHHHHhhhccc
Confidence 46799999999999999999999999999999655 35588899998888876
No 64
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.12 E-value=0.0013 Score=71.98 Aligned_cols=76 Identities=34% Similarity=0.423 Sum_probs=62.7
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.|++++|+|||+|-.|.-+|++|.+.|+.+|+++ ||+ .-||+.+|+.+. .+
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT------------~erA~~La~~~~-------~~ 225 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRT------------LERAEELAKKLG-------AE 225 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCC------------HHHHHHHHHHhC-------Ce
Confidence 4889999999999999999999999999999993 442 347777777766 22
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
.. ..+++.+.+.++|+||.+|.++.
T Consensus 226 ~~---------------------~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 226 AV---------------------ALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred ee---------------------cHHHHHHhhhhCCEEEEecCCCc
Confidence 22 46788899999999999998876
No 65
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.12 E-value=0.0037 Score=66.27 Aligned_cols=83 Identities=28% Similarity=0.327 Sum_probs=60.5
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
+.+.+|+|+|+|.+|..+++.|...|+.+|+++|.+ ..|++.+++.+. . . .
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~----------------------~~ra~~la~~~g----~-~--~ 226 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT----------------------YERAEELAKELG----G-N--A 226 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC----------------------HHHHHHHHHHcC----C-e--E
Confidence 679999999999999999999999999999998762 234555554432 1 1 1
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHH
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLL 494 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~ 494 (606)
. ..+.+.+.+.++|+||.||-+.+....+..+
T Consensus 227 ~---------------------~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 227 V---------------------PLDELLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred E---------------------eHHHHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 1 2234666778899999999988774434443
No 66
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.10 E-value=0.0015 Score=72.06 Aligned_cols=77 Identities=25% Similarity=0.300 Sum_probs=57.9
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.+.+++|+|+|+|+.|..++++|+..|+.+|+++... ..|++.+++.+. ...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt----------------------~~ra~~La~~~~----~~~-- 229 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT----------------------IEKAQKITSAFR----NAS-- 229 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC----------------------HHHHHHHHHHhc----CCe--
Confidence 4778999999999999999999999999999995431 125555555432 111
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
.+ ..+.+.+.+.++|+||.||-++.
T Consensus 230 ~~---------------------~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 230 AH---------------------YLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred Ee---------------------cHHHHHHHhccCCEEEECcCCCC
Confidence 11 24566788999999999998865
No 67
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=97.09 E-value=0.00026 Score=60.76 Aligned_cols=44 Identities=30% Similarity=0.354 Sum_probs=29.7
Q ss_pred CCCcccccCcCCCCCCCCCCcccCccc---cccccHHHHHHHHHHHHHHHHccC
Q 007355 553 RLGCYFCNDVVAPTDSTANRTLDQQCT---VTRPGLAPIASALAVELFVGVLHH 603 (606)
Q Consensus 553 ~lgCy~C~d~~ap~~s~~~rtldq~ct---V~~Pgv~~ias~~AvEll~~ll~~ 603 (606)
+.+||+|.....|. . .+.|. |++|.+++||++||.|+|+.|++.
T Consensus 2 ~~pC~rCl~p~~~~-~------~~~C~~~GVlg~~~giigslqA~eaik~l~g~ 48 (84)
T PF05237_consen 2 KTPCYRCLFPEPPE-S------APTCAEAGVLGPVVGIIGSLQANEAIKLLLGI 48 (84)
T ss_dssp T---HHHHHTTSS---------TTSSSTS-B-HHHHHHHHHHHHHHHHHHHCT-
T ss_pred CCceehhcCCCCCc-c------CCCccccccccchHHHHHHHHHHHHHHHHHhc
Confidence 46899999433311 1 24564 999999999999999999999964
No 68
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.06 E-value=0.00087 Score=59.52 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=62.9
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.|++++|+|||.|.+|..-++.|...| .+++++..+. +.+ | ..++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~--------------~~~------~------------~~i~~~ 50 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI--------------EFS------E------------GLIQLI 50 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE--------------HHH------H------------TSCEEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch--------------hhh------h------------hHHHHH
Confidence 478999999999999999999999999 7999988865 111 0 112221
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
.. .. ++.++++|+||.++|+.+....+-..|+++++|+-.+
T Consensus 51 --~~-------------------~~---~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 51 --RR-------------------EF---EEDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp --ES-------------------S----GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred --hh-------------------hH---HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 11 11 1336889999999999999889999999999977544
No 69
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.06 E-value=0.0019 Score=67.36 Aligned_cols=36 Identities=33% Similarity=0.512 Sum_probs=33.3
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++|+|+|+||.|..+++.|...|+.+|++++.
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 367889999999999999999999999999999876
No 70
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.97 E-value=0.0057 Score=61.15 Aligned_cols=94 Identities=15% Similarity=0.182 Sum_probs=67.9
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
|++++|+|||.|.+|..-++.|+..| .++|+||++.- .++ .. +.+. -+++.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~g-a~VtVvsp~~~-------------~~l--------~~----l~~~---~~i~~ 57 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAG-AQLRVIAEELE-------------SEL--------TL----LAEQ---GGITW 57 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCC-CEEEEEcCCCC-------------HHH--------HH----HHHc---CCEEE
Confidence 78899999999999999999999999 58999987421 111 11 1111 13344
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
+.... + ...+.++|+||.+||+.+....+-..|+..++++-.+
T Consensus 58 ~~~~~-------------------~--~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 58 LARCF-------------------D--ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EeCCC-------------------C--HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 33211 1 2346889999999999988888889999999988443
No 71
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.96 E-value=0.0086 Score=51.62 Aligned_cols=92 Identities=23% Similarity=0.325 Sum_probs=60.7
Q ss_pred cEEEECCChHHHHHHHHHHHhCC--CeEEEE-eCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGV--RKITLL-DNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GV--g~ItlV-D~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
||.|||+|.+|..+++.|.+.|+ .+|.++ +. ...|++.++ +.++ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r----------------------~~~~~~~~~----~~~~-~~~~~- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR----------------------SPEKAAELA----KEYG-VQATA- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES----------------------SHHHHHHHH----HHCT-TEEES-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC----------------------cHHHHHHHH----Hhhc-ccccc-
Confidence 68999999999999999999994 344432 22 122333333 3333 22221
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHH-HHcCCCeEEEEecC
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLL-CANTNKITITAALG 508 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~-~~~~~~p~I~aalG 508 (606)
....+.++.+|+||.|+.......++..+ ....++.+|+.+.|
T Consensus 53 -----------------------~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 53 -----------------------DDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp -----------------------EEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred -----------------------CChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeCCC
Confidence 13456778999999999988888777777 56678888887543
No 72
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.92 E-value=0.0057 Score=67.49 Aligned_cols=77 Identities=30% Similarity=0.416 Sum_probs=56.9
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.+.+++|+|+|+|.+|..+++.|...|+.+++++|.+ ..|++..++.+. . .
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs----------------------~~ra~~la~~~g----~---~ 227 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT----------------------YERAEDLAKELG----G---E 227 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC----------------------HHHHHHHHHHcC----C---e
Confidence 3778999999999999999999999999999997662 124444444321 1 1
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHH
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRES 487 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~ 487 (606)
.+ ..+.+.+.+.++|+||.||.+.+.
T Consensus 228 ~i---------------------~~~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 228 AV---------------------KFEDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred Ee---------------------eHHHHHHHHhhCCEEEECCCCCCc
Confidence 11 234566778899999999987663
No 73
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.0039 Score=70.23 Aligned_cols=122 Identities=18% Similarity=0.276 Sum_probs=89.7
Q ss_pred cccceEecccCCCChhhhhhhhHHhhhhhhhhhcCCcch--hhhhcCCcEEEECCCh-HHHHHHHHHHHhCCCeEEEEeC
Q 007355 320 RKVPRCISLAKSMDPTRLAISAADLNLKLMRWRQLPSLN--LDILSSRKCLLLGAGT-LGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 320 kl~p~~~dl~~~~dp~~la~~a~dlnlry~R~r~lp~~~--q~~L~~~kVllvGaGg-LGs~vA~~La~~GVg~ItlVD~ 396 (606)
+..|.+.|+...... +-+.+.+ .-+-|.-.-|+.. ..-+.+++|||-|+|| +|+++++++++.+.++|.++|.
T Consensus 208 ~~lP~~~~l~~~~~~--lreI~ie--DLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~ 283 (588)
T COG1086 208 RILPQLTDLKDLNGQ--LREIEIE--DLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSR 283 (588)
T ss_pred EecCcHHHHHHhccc--cccCCHH--HHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecC
Confidence 455776665542222 2222222 1144444444444 4789999999999865 8999999999999999999877
Q ss_pred CcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhcc--
Q 007355 397 GRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILS-- 474 (606)
Q Consensus 397 d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~-- 474 (606)
+..|-......|++.+|..++..+-.+| .+.+.+...+.+
T Consensus 284 ----------------------~E~~~~~i~~el~~~~~~~~~~~~igdV----------------rD~~~~~~~~~~~k 325 (588)
T COG1086 284 ----------------------DEYKLYLIDMELREKFPELKLRFYIGDV----------------RDRDRVERAMEGHK 325 (588)
T ss_pred ----------------------chHHHHHHHHHHHhhCCCcceEEEeccc----------------ccHHHHHHHHhcCC
Confidence 5667778888999999988888887665 578889999998
Q ss_pred CCEEEEeCC
Q 007355 475 HDVIFLLTD 483 (606)
Q Consensus 475 ~DvV~~~tD 483 (606)
.|+||-+..
T Consensus 326 vd~VfHAAA 334 (588)
T COG1086 326 VDIVFHAAA 334 (588)
T ss_pred CceEEEhhh
Confidence 899998764
No 74
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.75 E-value=0.0096 Score=58.37 Aligned_cols=84 Identities=24% Similarity=0.289 Sum_probs=60.1
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
.+++++|+|+|+ |++|..+++.|+..| .++++++.+ ..|++.+++.+.+.+ ...+
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~----------------------~~~~~~l~~~l~~~~-~~~~ 80 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD----------------------LERAQKAADSLRARF-GEGV 80 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC----------------------HHHHHHHHHHHHhhc-CCcE
Confidence 467899999996 999999999999998 588887642 235666666665433 3333
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
.... ..+.+++.+.+.++|+||.++-...
T Consensus 81 ~~~~------------------~~~~~~~~~~~~~~diVi~at~~g~ 109 (194)
T cd01078 81 GAVE------------------TSDDAARAAAIKGADVVFAAGAAGV 109 (194)
T ss_pred EEee------------------CCCHHHHHHHHhcCCEEEECCCCCc
Confidence 3322 1245667788899999999986544
No 75
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.73 E-value=0.0055 Score=57.26 Aligned_cols=35 Identities=37% Similarity=0.562 Sum_probs=31.6
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|+|+|++|..+++.|+..|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 56789999999999999999999998778999875
No 76
>PLN00203 glutamyl-tRNA reductase
Probab=96.66 E-value=0.0063 Score=68.97 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=57.7
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
|.+++|+|||+|..|..++++|...|+.+|++++.. ..|++.+++.+ +++.+..
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs----------------------~era~~La~~~----~g~~i~~ 317 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS----------------------EERVAALREEF----PDVEIIY 317 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC----------------------HHHHHHHHHHh----CCCceEe
Confidence 678999999999999999999999999999997652 22454544433 3333322
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
. ..+++.+.+.++|+||.||-+..
T Consensus 318 ~---------------------~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 318 K---------------------PLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred e---------------------cHhhHHHHHhcCCEEEEccCCCC
Confidence 2 23456677899999999997765
No 77
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=96.63 E-value=0.00073 Score=66.98 Aligned_cols=52 Identities=25% Similarity=0.277 Sum_probs=48.5
Q ss_pred hhhhhcCCcEEEECCChHHHH-HHHHHHHhCCCeE------EEE---eCCcccccCCCcCcC
Q 007355 358 NLDILSSRKCLLLGAGTLGCQ-VARMLMAWGVRKI------TLL---DNGRVAMSNPLRQSL 409 (606)
Q Consensus 358 ~q~~L~~~kVllvGaGgLGs~-vA~~La~~GVg~I------tlV---D~d~Ve~sNl~RQ~L 409 (606)
-++++++++|.|+|.|+.|+. ++..|+.+||+.+ ++| |++..+.+|+|||.+
T Consensus 99 a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 99 ALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 468999999999999999999 9999999999998 999 999999999999865
No 78
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.62 E-value=0.014 Score=55.97 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=60.3
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.|++++|+|+|.|.+|...++.|...| .++++|+.+.. +++ .++ +.+..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~g-a~V~VIsp~~~-------------~~l---------------~~l-~~i~~- 58 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTG-AFVTVVSPEIC-------------KEM---------------KEL-PYITW- 58 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCccC-------------HHH---------------Hhc-cCcEE-
Confidence 588999999999999999999999999 48888865421 111 010 11221
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcC
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT 498 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~ 498 (606)
.... .+ +.-++++|+||.+||+.+.-..+...|+.+
T Consensus 59 -~~~~-------------------~~--~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 59 -KQKT-------------------FS--NDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred -Eecc-------------------cC--hhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 1111 11 223688999999999999998888888774
No 79
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.018 Score=58.32 Aligned_cols=96 Identities=24% Similarity=0.281 Sum_probs=66.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~ 444 (606)
.+++|+|+|-+|..+|+.|...| ..++++|.|. + .+.+.+... ...+++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g-~~Vv~Id~d~--------------~-----------~~~~~~~~~---~~~~~v~g 51 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEG-HNVVLIDRDE--------------E-----------RVEEFLADE---LDTHVVIG 51 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCC-CceEEEEcCH--------------H-----------HHHHHhhhh---cceEEEEe
Confidence 47999999999999999999999 5666666632 1 112222222 22333332
Q ss_pred ccCCCCCCCCCccccccccChhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHc-CCCeEEEE
Q 007355 445 AIPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCAN-TNKITITA 505 (606)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~e~R~ll~~~~~~-~~~p~I~a 505 (606)
+ ..+.+-|.++ +.++|+++-+|++-+.-..+..++.+ +|.|-+-+
T Consensus 52 d----------------~t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 52 D----------------ATDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred c----------------CCCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 1 1356677777 89999999999998887777777766 78887755
No 80
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.60 E-value=0.0046 Score=58.91 Aligned_cols=102 Identities=21% Similarity=0.364 Sum_probs=65.5
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHH--HHhhCCCcEEEEEe
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS--LERIFPAVAAEGVV 443 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~--L~~inP~v~v~~~~ 443 (606)
||.|+|+|..|+.+|..|+..| .++++.+.+. + .++.+.+. -....|+++...
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~--------------~--------~~~~i~~~~~n~~~~~~~~l~~-- 55 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE--------------E--------QIEEINETRQNPKYLPGIKLPE-- 55 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH--------------H--------HHHHHHHHTSETTTSTTSBEET--
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH--------------H--------HHHHHHHhCCCCCCCCCcccCc--
Confidence 7999999999999999999999 7777755543 0 11111111 001123322221
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--cCCCeEEEEecCC
Q 007355 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALGF 509 (606)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~--~~~~p~I~aalG~ 509 (606)
. .. -..++++.++++|+|+.++-+...|..+.++.. ..+.++|.+.-|+
T Consensus 56 -~---------------i~-~t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 56 -N---------------IK-ATTDLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp -T---------------EE-EESSHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred -c---------------cc-cccCHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 0 11 235677888999999999999999999998876 5567888877676
No 81
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.46 E-value=0.019 Score=63.41 Aligned_cols=35 Identities=49% Similarity=0.723 Sum_probs=32.7
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+.+++|+|+|+|++|..+++.|...|+.+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67899999999999999999999999999999765
No 82
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.40 E-value=0.013 Score=61.81 Aligned_cols=32 Identities=34% Similarity=0.657 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCC-eEEEEeC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg-~ItlVD~ 396 (606)
+||.|+|+|++|+.+|..|+..|+. +|.++|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 4899999999999999999999985 8999987
No 83
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.36 E-value=0.017 Score=70.25 Aligned_cols=98 Identities=19% Similarity=0.215 Sum_probs=60.4
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCC-C------------eEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHH
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGV-R------------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVK 428 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GV-g------------~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~ 428 (606)
-+.+||+|||||.+|..+|+.|++.+- . .+++.|. ...+++.+++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~----------------------~~~~a~~la~ 624 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL----------------------YLKDAKETVE 624 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC----------------------CHHHHHHHHH
Confidence 457799999999999999999998532 1 2444443 2223433333
Q ss_pred HHHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEE
Q 007355 429 SLERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (606)
Q Consensus 429 ~L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~ 504 (606)
. .|+++ ++..++ .+.+.+.++++++|+|+.|+-..- -..+...|.++|+.++.
T Consensus 625 ~----~~~~~--~v~lDv----------------~D~e~L~~~v~~~DaVIsalP~~~-H~~VAkaAieaGkHvv~ 677 (1042)
T PLN02819 625 G----IENAE--AVQLDV----------------SDSESLLKYVSQVDVVISLLPASC-HAVVAKACIELKKHLVT 677 (1042)
T ss_pred h----cCCCc--eEEeec----------------CCHHHHHHhhcCCCEEEECCCchh-hHHHHHHHHHcCCCEEE
Confidence 2 34433 232222 356777888888999999987632 23445555566555543
No 84
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.34 E-value=0.013 Score=56.89 Aligned_cols=35 Identities=20% Similarity=0.424 Sum_probs=31.0
Q ss_pred hhcCCcEEEECCCh-HHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGAGT-LGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGaGg-LGs~vA~~La~~GVg~ItlVD~ 396 (606)
.|.+++|+|+|+|. +|..+|++|.+.|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 58899999999998 59999999999998 6888774
No 85
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.25 E-value=0.034 Score=56.52 Aligned_cols=95 Identities=15% Similarity=0.224 Sum_probs=68.8
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.+++++|||||.|.+|..=++.|+..| .+||+|-++.- +++ ..++ + .+. ++
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~-------------~el--------~~l~----~-~~~--i~ 72 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFS-------------KEF--------LDLK----K-YGN--LK 72 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCC-------------HHH--------HHHH----h-CCC--EE
Confidence 577999999999999999999999999 67999766521 112 1111 1 222 33
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
.+...+ . ...++++++||.|||+++.-..+...|...++++.++
T Consensus 73 ~~~r~~-----------------~----~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 73 LIKGNY-----------------D----KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred EEeCCC-----------------C----hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEc
Confidence 333211 1 2335789999999999999999999999999988766
No 86
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.23 E-value=0.039 Score=60.07 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=32.5
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+...+|+|+|+|.+|..+++.|.++|+ +++++|.+
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 4678899999999999999999999998 69998873
No 87
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.20 E-value=0.016 Score=62.44 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=32.2
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHH-hCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMA-WGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~-~GVg~ItlVD~ 396 (606)
.|++++|+|+|+ |.+|+.++++|+. .|++++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 588999999999 8999999999985 58999999765
No 88
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=96.16 E-value=0.027 Score=59.88 Aligned_cols=92 Identities=22% Similarity=0.285 Sum_probs=62.3
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
..+++++|.|+|.|.+|..+|+.|.+.|+ ++..+|... + .. +.+.
T Consensus 132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~------~~-------------------~~~~- 176 (312)
T PRK15469 132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------K------SW-------------------PGVQ- 176 (312)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------C------CC-------------------CCce-
Confidence 46889999999999999999999999997 555666411 0 00 0111
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHH---cCCCeEEEEec
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCA---NTNKITITAAL 507 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~ll~~~~~---~~~~p~I~aal 507 (606)
.+ .....++++++++|+|+.+. .+.+++.+++.-.. +.+..+||.+-
T Consensus 177 -~~--------------------~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 177 -SF--------------------AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred -ee--------------------cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCC
Confidence 11 02346788999999988886 56778888875322 33456677653
No 89
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.13 E-value=0.024 Score=60.54 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=59.4
Q ss_pred cCCcEEEECCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La-~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
..++++|+|+|+.|...++.|. ..|+.++++++. ...|++..++.+++.++ +++..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R----------------------~~~~a~~~a~~~~~~~g-~~v~~ 184 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR----------------------DSAKAEALALQLSSLLG-IDVTA 184 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEE
Confidence 3578999999999999999997 478999999654 34578888888875442 33322
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
.+++++.+.++|+|+.||-+.+
T Consensus 185 -----------------------~~~~~~av~~aDiVvtaT~s~~ 206 (326)
T TIGR02992 185 -----------------------ATDPRAAMSGADIIVTTTPSET 206 (326)
T ss_pred -----------------------eCCHHHHhccCCEEEEecCCCC
Confidence 2345677789999999997744
No 90
>PLN02928 oxidoreductase family protein
Probab=96.08 E-value=0.018 Score=62.20 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=64.4
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
..|.+++|.|+|.|.+|..+|+.|...|. +++.+|... .+.. .... | .|.-.+
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~------~~~~---~~~~---~--------------~~~~~~ 207 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW------TSEP---EDGL---L--------------IPNGDV 207 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------Chhh---hhhh---c--------------cccccc
Confidence 46999999999999999999999999997 777776520 0000 0000 0 000000
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHc---CCCeEEEEe
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCAN---TNKITITAA 506 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~ll~~~~~~---~~~p~I~aa 506 (606)
...... ......++++++++|+|+.++ .+.+++.+++.-... .+..+||.+
T Consensus 208 ~~~~~~----------------~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 208 DDLVDE----------------KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred cccccc----------------cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 010000 012456889999999999987 467788887754332 234566765
No 91
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.08 E-value=0.033 Score=59.40 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=66.8
Q ss_pred cCCcEEEECCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La-~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
..++++|+|+|+.|...++.|+ ..|+++|+++|. ...|++.+++.+++.++ +++..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~~~~~~~~~~-~~~~~ 182 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSR----------------------TFEKAYAFAQEIQSKFN-TEIYV 182 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcC-CcEEE
Confidence 4678999999999999998876 569999999765 23477788887765442 33332
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
+ ++.++.+.++|+|+.||-+.+. ++. -+.+.|+-++..
T Consensus 183 ~-----------------------~~~~~~~~~aDiVi~aT~s~~p--~i~-~~l~~G~hV~~i 220 (325)
T PRK08618 183 V-----------------------NSADEAIEEADIIVTVTNAKTP--VFS-EKLKKGVHINAV 220 (325)
T ss_pred e-----------------------CCHHHHHhcCCEEEEccCCCCc--chH-HhcCCCcEEEec
Confidence 2 3346677899999999988743 444 455667665543
No 92
>PRK09242 tropinone reductase; Provisional
Probab=96.06 E-value=0.034 Score=56.02 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=58.3
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
++++++++|.|+ |++|..+++.|+..|. ++++++.+ ..+.+.+++.+...+|+.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~----------------------~~~~~~~~~~l~~~~~~~~~ 62 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD----------------------ADALAQARDELAEEFPEREV 62 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC----------------------HHHHHHHHHHHHhhCCCCeE
Confidence 367889999997 7999999999999996 57776642 22344556666666777777
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD 483 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD 483 (606)
..+..++ . ..++...-.+.+.+.+...|+||.+..
T Consensus 63 ~~~~~Dl-------~--~~~~~~~~~~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 63 HGLAADV-------S--DDEDRRAILDWVEDHWDGLHILVNNAG 97 (257)
T ss_pred EEEECCC-------C--CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 7776554 1 011111111222233345788888875
No 93
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.04 E-value=0.0079 Score=61.05 Aligned_cols=38 Identities=32% Similarity=0.553 Sum_probs=35.8
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCC--eEEEEeCCc
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR 398 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg--~ItlVD~d~ 398 (606)
.++++||+|+|+|+.|..+|+.|+..|++ +|+++|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 58889999999999999999999999999 999999973
No 94
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.01 E-value=0.032 Score=61.79 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=32.6
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+.+++|+|+|+|.+|..+|+.|...|+ +++++|.|
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~d 244 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVD 244 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 3689999999999999999999999998 78888764
No 95
>PRK06197 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.027 Score=58.68 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=30.4
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..+++++|+|.|+ ||+|.++|+.|+..|. ++++++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 3567899999997 8999999999999997 5667654
No 96
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.91 E-value=0.045 Score=50.24 Aligned_cols=99 Identities=20% Similarity=0.293 Sum_probs=63.7
Q ss_pred cEEEECC-ChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 007355 366 KCLLLGA-GTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~-~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~ 443 (606)
||+|+|+ |-.|..+++.+.. -|+.=.-.+|... +. +-..|+ | + +.. +.-.++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~---g----~-----~~~----~~~~~~- 55 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDV---G----E-----LAG----IGPLGV- 55 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBC---H----H-----HCT----SST-SS-
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchh---h----h-----hhC----cCCccc-
Confidence 7999999 9999999999999 6666666667643 00 112333 2 0 011 110000
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEecCCc
Q 007355 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFD 510 (606)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aalG~~ 510 (606)
.-.++++++++.+|+|||.| +++.-...-++|.++++|+|.+.-|+.
T Consensus 56 -------------------~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 56 -------------------PVTDDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTTGFS 102 (124)
T ss_dssp -------------------BEBS-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SSSH
T ss_pred -------------------ccchhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECCCCC
Confidence 12366788888899999999 667666677788899999999887774
No 97
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.89 E-value=0.037 Score=58.78 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=57.3
Q ss_pred cCCcEEEECCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~-~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
..++|+|+|+|+.|..+++.+.. .|+.+|++++. ...|++..++.+++.. ..+..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R----------------------s~~~a~~~a~~~~~~g--~~~~~ 179 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR----------------------DPAKAEALAAELRAQG--FDAEV 179 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcC--CceEE
Confidence 47899999999999999987775 68899999655 3457888888877642 22222
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (606)
. +..++.+.++|+|+.||.+.
T Consensus 180 ~-----------------------~~~~~av~~aDIVi~aT~s~ 200 (314)
T PRK06141 180 V-----------------------TDLEAAVRQADIISCATLST 200 (314)
T ss_pred e-----------------------CCHHHHHhcCCEEEEeeCCC
Confidence 1 33456678999999999976
No 98
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.79 E-value=0.049 Score=55.17 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=46.1
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
.++++.++|.|+ ||+|..+|+.|+..|.. +.+++.+. .|.+.+++.+.+.+|..++
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~ 61 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE----------------------ERLASAEARLREKFPGARL 61 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH----------------------HHHHHHHHHHHhhCCCceE
Confidence 367889999998 68999999999999974 67766531 2344555666666777777
Q ss_pred EEEeccc
Q 007355 440 EGVVMAI 446 (606)
Q Consensus 440 ~~~~~~I 446 (606)
..+..++
T Consensus 62 ~~~~~D~ 68 (265)
T PRK07062 62 LAARCDV 68 (265)
T ss_pred EEEEecC
Confidence 7766554
No 99
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.77 E-value=0.046 Score=58.21 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=30.8
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCC-eEEEEeC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg-~ItlVD~ 396 (606)
+..||.|+|||.+|+.+|..|+..|+. +|.|+|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 356999999999999999999999985 7999886
No 100
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.77 E-value=0.067 Score=54.00 Aligned_cols=63 Identities=22% Similarity=0.267 Sum_probs=44.3
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
++++++|+|.|+ ||+|.++++.|+..|. ++.++|.+ ..+.+.+++.+.+.++..++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~----------------------~~~~~~~~~~~~~~~~~~~~ 60 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD----------------------AALAERAAAAIARDVAGARV 60 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC----------------------HHHHHHHHHHHHhccCCceE
Confidence 477899999996 6999999999999996 47776641 23445555666654455566
Q ss_pred EEEeccc
Q 007355 440 EGVVMAI 446 (606)
Q Consensus 440 ~~~~~~I 446 (606)
..+..++
T Consensus 61 ~~~~~Dl 67 (260)
T PRK07063 61 LAVPADV 67 (260)
T ss_pred EEEEccC
Confidence 6665544
No 101
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.77 E-value=0.053 Score=56.97 Aligned_cols=31 Identities=35% Similarity=0.491 Sum_probs=27.6
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
||.|+|+|.+|+.+|..|++.|. +++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence 79999999999999999999986 57887764
No 102
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.75 E-value=0.054 Score=54.82 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=30.0
Q ss_pred hhhcCCcEEEECC-C-hHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA-G-TLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa-G-gLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..+++++++|.|+ | |+|..+++.|+..|.. ++++|.
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~ 50 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI 50 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence 4566899999997 5 7999999999999975 777654
No 103
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.73 E-value=0.036 Score=57.30 Aligned_cols=104 Identities=20% Similarity=0.319 Sum_probs=68.1
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHh----CC------CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHH
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAW----GV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~----GV------g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~ 429 (606)
.+|++.||+++|+|+.|..+|+.|+.+ |+ ++|.++|..=+=..+ +.+-...+..
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~----------------r~~l~~~~~~ 84 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD----------------REDLNPHKKP 84 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT----------------TSSHSHHHHH
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc----------------CccCChhhhh
Confidence 569999999999999999999999999 99 899999987542221 1111111111
Q ss_pred H-HhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccC--CEEEEeCCChH--HHHHHHHHHHcCCCeEEE
Q 007355 430 L-ERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSH--DVIFLLTDTRE--SRWLPTLLCANTNKITIT 504 (606)
Q Consensus 430 L-~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~--DvV~~~tDs~e--~R~ll~~~~~~~~~p~I~ 504 (606)
+ +..+|. .....+.+.++.. |++|.++.-.. +..++..|+.....|+|.
T Consensus 85 ~a~~~~~~--------------------------~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF 138 (255)
T PF03949_consen 85 FARKTNPE--------------------------KDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIF 138 (255)
T ss_dssp HHBSSSTT--------------------------T--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEE
T ss_pred hhccCccc--------------------------ccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEE
Confidence 1 121111 0113667778877 99999875333 567788888888889886
Q ss_pred E
Q 007355 505 A 505 (606)
Q Consensus 505 a 505 (606)
+
T Consensus 139 ~ 139 (255)
T PF03949_consen 139 P 139 (255)
T ss_dssp E
T ss_pred E
Confidence 5
No 104
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.72 E-value=0.036 Score=58.26 Aligned_cols=35 Identities=23% Similarity=0.442 Sum_probs=32.1
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.|.+++|+|+|+|++|..+|+.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5789999999999999999999999997 8888765
No 105
>PRK05854 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.047 Score=57.52 Aligned_cols=64 Identities=27% Similarity=0.319 Sum_probs=44.8
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcE
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~ 438 (606)
..+++++++|.|+ ||+|.++|+.|++.|. ++.+++.+ ..|++.+.+.|.+.+|..+
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~----------------------~~~~~~~~~~l~~~~~~~~ 66 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN----------------------RAKGEAAVAAIRTAVPDAK 66 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC----------------------HHHHHHHHHHHHHhCCCCc
Confidence 4577899999995 6799999999999995 67776542 2345555566666666655
Q ss_pred EEEEeccc
Q 007355 439 AEGVVMAI 446 (606)
Q Consensus 439 v~~~~~~I 446 (606)
+..+..++
T Consensus 67 v~~~~~Dl 74 (313)
T PRK05854 67 LSLRALDL 74 (313)
T ss_pred eEEEEecC
Confidence 65555444
No 106
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.66 E-value=0.1 Score=52.25 Aligned_cols=99 Identities=19% Similarity=0.095 Sum_probs=61.6
Q ss_pred cEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCC--CcEEEEE
Q 007355 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP--AVAAEGV 442 (606)
Q Consensus 366 kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP--~v~v~~~ 442 (606)
||.||| +|.+|+.+++.|+..| .+++++|.+ ..|++.+++....... ++.....
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~----------------------~~~~~~l~~~~~~~~~~~g~~~~~~ 58 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD----------------------LEKAEEAAAKALEELGHGGSDIKVT 58 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC----------------------HHHHHHHHHHHHhhccccCCCceEE
Confidence 699997 8999999999999999 577776542 2234333333222111 1110000
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH-cCCCeEEEEecCC
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA-NTNKITITAALGF 509 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~-~~~~p~I~aalG~ 509 (606)
.....+.++++|+||.|+-....+..+..+.. ..++.+|++..|.
T Consensus 59 ----------------------~~~~~ea~~~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~~ngi 104 (219)
T TIGR01915 59 ----------------------GADNAEAAKRADVVILAVPWDHVLKTLESLRDELSGKLVISPVVPL 104 (219)
T ss_pred ----------------------EeChHHHHhcCCEEEEECCHHHHHHHHHHHHHhccCCEEEEeccCc
Confidence 01224557789999999988877776666643 3457788875554
No 107
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.63 E-value=0.057 Score=53.75 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=31.0
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++++|+|+|+ |++|..+++.|+..|.. +++++.+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 367889999997 78999999999999976 8887764
No 108
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.57 E-value=0.058 Score=57.69 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=58.4
Q ss_pred cCCcEEEECCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~-~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
..++++|+|+|+.|...+..|.. .|+.++++++. ...|++..++.+++.. ++++..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R----------------------~~~~a~~l~~~~~~~~-g~~v~~ 187 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR----------------------DAAKAEAYAADLRAEL-GIPVTV 187 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC----------------------CHHHHHHHHHHHhhcc-CceEEE
Confidence 35789999999999999999985 67899999754 3447888888876543 233322
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
.+++++.+.++|+|+.||-+.+
T Consensus 188 -----------------------~~d~~~al~~aDiVi~aT~s~~ 209 (330)
T PRK08291 188 -----------------------ARDVHEAVAGADIIVTTTPSEE 209 (330)
T ss_pred -----------------------eCCHHHHHccCCEEEEeeCCCC
Confidence 2345677789999999997754
No 109
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.56 E-value=0.057 Score=59.64 Aligned_cols=95 Identities=21% Similarity=0.311 Sum_probs=61.8
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
+++++|+|+|+|++|..+|+.|+..|. +++++|.+.- + ..+...+.|.+. +++ .
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~-------------~--------~~~~~~~~l~~~--~~~--~ 56 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEE-------------D--------QLKEALEELGEL--GIE--L 56 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch-------------H--------HHHHHHHHHHhc--CCE--E
Confidence 678999999999999999999999995 7899887531 1 111122334332 233 2
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEE
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITIT 504 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~ 504 (606)
+..+. . .+...++|+||.++......- .-..|+++++|++.
T Consensus 57 ~~~~~------------------~---~~~~~~~d~vv~~~g~~~~~~-~~~~a~~~~i~~~~ 97 (450)
T PRK14106 57 VLGEY------------------P---EEFLEGVDLVVVSPGVPLDSP-PVVQAHKKGIEVIG 97 (450)
T ss_pred EeCCc------------------c---hhHhhcCCEEEECCCCCCCCH-HHHHHHHCCCcEEe
Confidence 22111 0 134578999999988654433 44456778888775
No 110
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.56 E-value=0.054 Score=55.97 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=71.5
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCC----------eEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHH
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR----------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg----------~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~ 429 (606)
.+|++.||+++|+|+.|..+|+.|..+|++ +|.++|..-+=..+- . |. -..|... ++.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--~------~l---~~~~~~~-~~~ 88 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--K------ET---CPNEYHL-ARF 88 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--C------cc---CHHHHHH-HHH
Confidence 578899999999999999999999999998 999999875432221 1 11 1122221 111
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc--cCCEEEEeCCChH--HHHHHHHHHHcCCCeEEEE
Q 007355 430 LERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDTRE--SRWLPTLLCANTNKITITA 505 (606)
Q Consensus 430 L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs~e--~R~ll~~~~~~~~~p~I~a 505 (606)
. ++. .....+.+.++ +.|++|.++.-.. ++.++..|+.....|+|.+
T Consensus 89 ~---~~~--------------------------~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 139 (254)
T cd00762 89 A---NPE--------------------------RESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFA 139 (254)
T ss_pred c---Ccc--------------------------cccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEE
Confidence 1 110 01246677777 8899998876332 5677888888888888865
No 111
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.55 E-value=0.11 Score=54.06 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=59.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GV---g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
+.||.+||+|-+|..+++.|...|. .+|.+.|. ...|++.+ .+.+ +++
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r----------------------~~~~~~~l----~~~~-g~~-- 52 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL----------------------NVSNLKNA----SDKY-GIT-- 52 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC----------------------CHHHHHHH----HHhc-CcE--
Confidence 4589999999999999999999885 34665443 12233322 2212 222
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--cCCCeEEEEecC
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALG 508 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~--~~~~p~I~aalG 508 (606)
.. .+..++++++|+||.|+-....+-++..+.. ..+..+|+.+-|
T Consensus 53 ~~-----------------------~~~~e~~~~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AG 99 (272)
T PRK12491 53 IT-----------------------TNNNEVANSADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAG 99 (272)
T ss_pred Ee-----------------------CCcHHHHhhCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCC
Confidence 11 1223456789999999987777777776653 345677886544
No 112
>PRK05875 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.096 Score=53.36 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=30.0
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 67899999997 8999999999999997 6777665
No 113
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.52 E-value=0.083 Score=54.22 Aligned_cols=89 Identities=20% Similarity=0.275 Sum_probs=56.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhCC--CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGV--RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GV--g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
.+|.|||+|.+|+.+++.|...|. ..+.++|++ ..+++.+++. + ++.+ .
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~----------------------~~~~~~~~~~----~-g~~~--~ 53 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPS----------------------PEKRAALAEE----Y-GVRA--A 53 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCC----------------------HHHHHHHHHh----c-CCee--c
Confidence 479999999999999999999884 355565431 1223222222 1 1211 0
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
....+.++++|+||.|+-....+.++..+....++.+|+.
T Consensus 54 -----------------------~~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs~ 93 (267)
T PRK11880 54 -----------------------TDNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVSI 93 (267)
T ss_pred -----------------------CChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEe
Confidence 1223446789999999977666766666654335667765
No 114
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.51 E-value=0.069 Score=57.05 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=32.7
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++..||.|||+|.+|+.+|..|+..|...|.|+|-+
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~ 39 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV 39 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 566899999999999999999999998779999974
No 115
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.51 E-value=0.097 Score=54.69 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=31.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++|+|+|+||.|..++..|+..|+.+|++++.+
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3589999999999999999999999999999875
No 116
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.50 E-value=0.051 Score=57.55 Aligned_cols=77 Identities=18% Similarity=0.121 Sum_probs=58.6
Q ss_pred hcCCcEEEECCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~-~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
...++++|+|+|..|...++.+.. .|+.+|.++|. ...|+++.++.+++.. +.+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r----------------------~~~~a~~~a~~~~~~~--~~~~ 178 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR----------------------TAASAAAFCAHARALG--PTAE 178 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC----------------------CHHHHHHHHHHHHhcC--CeeE
Confidence 356899999999999999999975 68889999765 3457888888887542 2221
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
.+..++.+.++|+|+.||-+.+
T Consensus 179 ------------------------~~~~~~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 179 ------------------------PLDGEAIPEAVDLVVTATTSRT 200 (304)
T ss_pred ------------------------ECCHHHHhhcCCEEEEccCCCC
Confidence 1334567789999999998865
No 117
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.49 E-value=0.084 Score=55.33 Aligned_cols=104 Identities=23% Similarity=0.321 Sum_probs=71.5
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHh----CC------CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHH
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAW----GV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~----GV------g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~ 429 (606)
.+|++.||+++|+|+.|..+|+.|..+ |+ ++|.++|..=+=..+ |. |+ -..|.+-+.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r~------~l---~~~~~~~a~-- 87 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--RK------DL---TPFKKPFAR-- 87 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--CC------cc---hHHHHHHHh--
Confidence 578899999999999999999999999 99 799999987643221 21 12 222332221
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhc--cCCEEEEeCCC--hHHHHHHHHHHHcCCCeEEEE
Q 007355 430 LERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDT--RESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 430 L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs--~e~R~ll~~~~~~~~~p~I~a 505 (606)
..++ . ....+.+.++ +.|++|.++.- .=++.++..|+.....|+|.+
T Consensus 88 --~~~~-------~--------------------~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFa 138 (279)
T cd05312 88 --KDEE-------K--------------------EGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFA 138 (279)
T ss_pred --hcCc-------c--------------------cCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 1121 0 1235677777 77999998852 235667888888888888865
No 118
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.49 E-value=0.15 Score=51.47 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=59.7
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GV---g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
+..||.|||+|..|..+++.|++.|. ..+.+++.. ...|++.+++ .++ +.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~---------------------~~~~~~~~~~----~~~-~~- 55 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS---------------------NVEKLDQLQA----RYN-VS- 55 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC---------------------CHHHHHHHHH----HcC-cE-
Confidence 45789999999999999999998873 223333220 1123333222 221 22
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH-cCCCeEEEEecCC
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA-NTNKITITAALGF 509 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~-~~~~p~I~aalG~ 509 (606)
.. .+..++++++|+||.|+-+...+..+..+.. ..++.+|+..-|.
T Consensus 56 -~~-----------------------~~~~~~~~~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~~gi 102 (245)
T PRK07634 56 -TT-----------------------TDWKQHVTSVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAAGI 102 (245)
T ss_pred -Ee-----------------------CChHHHHhcCCEEEEecCHHHHHHHHHHHHhhccCCEEEEECCCC
Confidence 11 1234556789999999988877777776653 2356778775444
No 119
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.46 E-value=0.058 Score=57.50 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=33.1
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.++.||.|||+|.+|..+|..|+..|+..|.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 467899999999999999999999998889999974
No 120
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.44 E-value=0.083 Score=58.37 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=32.1
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+.+++|+|+|+|.+|..+|+.+...|+ +++++|.|
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3678999999999999999999999999 68887764
No 121
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.38 E-value=0.096 Score=55.60 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=46.8
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
..++.++|.|+ ||+|.++|+.|++.|. ++.++|.+ ..|.+.+++.+++.++..++.
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~----------------------~~~l~~~~~~l~~~~~~~~~~ 107 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARN----------------------PDKLKDVSDSIQSKYSKTQIK 107 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECC----------------------HHHHHHHHHHHHHHCCCcEEE
Confidence 35789999997 7899999999999997 57777652 234556677777777777777
Q ss_pred EEeccc
Q 007355 441 GVVMAI 446 (606)
Q Consensus 441 ~~~~~I 446 (606)
.+..++
T Consensus 108 ~~~~Dl 113 (320)
T PLN02780 108 TVVVDF 113 (320)
T ss_pred EEEEEC
Confidence 766554
No 122
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.37 E-value=0.11 Score=52.42 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=30.6
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++|+|.|+ |++|.++|+.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 477899999997 9999999999999997 5777665
No 123
>PRK09186 flagellin modification protein A; Provisional
Probab=95.35 E-value=0.11 Score=52.18 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=27.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEe
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD 395 (606)
+++++|+|.|+ |++|.++|+.|+..|. ++.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 46789999997 7999999999999996 466654
No 124
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.34 E-value=0.027 Score=52.98 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=53.4
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCC-eEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCc--EEE
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVR-KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV--AAE 440 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg-~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v--~v~ 440 (606)
.||.|+|+ |.+|+.+|..|+..|+. +|.|+|.+ ..|++.-+.-|....+.. .+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~----------------------~~~~~g~a~Dl~~~~~~~~~~~~ 58 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN----------------------EDKAEGEALDLSHASAPLPSPVR 58 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS----------------------HHHHHHHHHHHHHHHHGSTEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC----------------------cccceeeehhhhhhhhhcccccc
Confidence 38999999 99999999999999984 69998873 236666666666654333 222
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (606)
... ...+-++++|+|+.+...
T Consensus 59 i~~-----------------------~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 59 ITS-----------------------GDYEALKDADIVVITAGV 79 (141)
T ss_dssp EEE-----------------------SSGGGGTTESEEEETTST
T ss_pred ccc-----------------------ccccccccccEEEEeccc
Confidence 221 123446889999998865
No 125
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.29 E-value=0.046 Score=58.52 Aligned_cols=94 Identities=30% Similarity=0.376 Sum_probs=64.5
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
..|.+++|.|||+|.+|+.||+.|..+|+.-+ .+|+ |.. +.++ ..
T Consensus 138 ~el~gkTvGIiG~G~IG~~va~~l~afgm~v~-~~d~-------------~~~-------~~~~--------------~~ 182 (324)
T COG0111 138 TELAGKTVGIIGLGRIGRAVAKRLKAFGMKVI-GYDP-------------YSP-------RERA--------------GV 182 (324)
T ss_pred ccccCCEEEEECCCHHHHHHHHHHHhCCCeEE-EECC-------------CCc-------hhhh--------------cc
Confidence 37889999999999999999999999996544 3343 111 1111 01
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHcC---CCeEEEEecC
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAALG 508 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~ll~~~~~~~---~~p~I~aalG 508 (606)
.++ ...+.++++++++|+|++.+ -+.++|.+++.--.+. +-.+||++-|
T Consensus 183 ~~~--------------------~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG 235 (324)
T COG0111 183 DGV--------------------VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARG 235 (324)
T ss_pred ccc--------------------eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCc
Confidence 111 12466889999999998876 5778998888754433 3467787644
No 126
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.28 E-value=0.099 Score=57.67 Aligned_cols=36 Identities=14% Similarity=0.271 Sum_probs=32.1
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+.+++|+|+|+|.+|..+|+.+..+|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 789999999999999999999999998 588887643
No 127
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=95.25 E-value=0.074 Score=57.06 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=60.9
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
..+.+++|.|+|+|.+|.++|+.|-..| ..|.. ++..+ ..++ .+.+...+
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y--------~~r~~------------~~~~--~~~~~~~~------- 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY--------HSRTQ------------LPPE--EAYEYYAE------- 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee--------ecccC------------Cchh--hHHHhccc-------
Confidence 6899999999999999999999999977 55544 11111 1111 11111111
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEe-CCChHHHHHHHHHHHcCC---CeEEEEecC
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL-TDTRESRWLPTLLCANTN---KITITAALG 508 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~-tDs~e~R~ll~~~~~~~~---~p~I~aalG 508 (606)
....++++.++|+|+.| -.+.+++.++|.-...+- ..+||.+.|
T Consensus 208 -------------------------~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG 255 (336)
T KOG0069|consen 208 -------------------------FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARG 255 (336)
T ss_pred -------------------------ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccc
Confidence 13446778889976555 589999999998644332 355676544
No 128
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.23 E-value=0.11 Score=53.96 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
||+|+|+|.+|+.+|..|+..| .+++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence 6999999999999999999998 578998863
No 129
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.21 E-value=0.0064 Score=59.46 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=28.1
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~V 399 (606)
||.|||+|..|..+|..+++.| -+++++|.+.-
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G-~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAG-YEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTT-SEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCC-CcEEEEECChH
Confidence 6999999999999999999999 78999998654
No 130
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.20 E-value=0.089 Score=55.91 Aligned_cols=31 Identities=35% Similarity=0.645 Sum_probs=28.7
Q ss_pred cEEEECCChHHHHHHHHHHHhCC-CeEEEEeC
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GV-g~ItlVD~ 396 (606)
||.|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di 32 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 79999999999999999999998 68999885
No 131
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.20 E-value=0.15 Score=52.76 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=31.1
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.++++|+|+|+||+|..++..|+..|. +++++|.+
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~ 149 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT 149 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 457789999999999999999999996 89998764
No 132
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.18 E-value=0.065 Score=56.85 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=31.7
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..|.+++|.|+|.|.+|..+|+.|.+.|+ ++..+|.
T Consensus 118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r 153 (303)
T PRK06436 118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR 153 (303)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 57999999999999999999999988887 5667665
No 133
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.18 E-value=0.12 Score=54.49 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=29.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
..||.|+|+|..|+.+|+.|+..|. +++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4589999999999999999999994 68888875
No 134
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.17 E-value=0.12 Score=52.98 Aligned_cols=90 Identities=17% Similarity=0.186 Sum_probs=55.5
Q ss_pred cEEEECCChHHHHHHHHHHHhCCC--eEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg--~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~ 443 (606)
||.|||+|-+|..+++.|...|.. .+.+.|. ...|++.+ .+..+.+.+ .
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r----------------------~~~~~~~l----~~~~~~~~~--~- 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR----------------------NAQIAARL----AERFPKVRI--A- 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC----------------------CHHHHHHH----HHHcCCceE--e-
Confidence 699999999999999999998842 2333221 12233333 333333221 1
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEe
Q 007355 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA 506 (606)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aa 506 (606)
....++++++|+||.|+-....+.++..+....++.+|+..
T Consensus 53 ----------------------~~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis~~ 93 (258)
T PRK06476 53 ----------------------KDNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVISVI 93 (258)
T ss_pred ----------------------CCHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEEEC
Confidence 12334567899999999865566666555434566777753
No 135
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.17 E-value=0.036 Score=55.84 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=64.4
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.|++++|+|+|.|.+|.-=++.|+..| .+++++-.+. ..++ .. +.+..+ +.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-------------~~el--------~~----~~~~~~---i~ 59 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-------------EPEL--------KA----LIEEGK---IK 59 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-------------cHHH--------HH----HHHhcC---cc
Confidence 578999999999999999999999999 6677754432 1111 11 111111 11
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
.+. ..-. .+.+..+++||-+||+.+.-..+...|..+++|+-.+
T Consensus 60 ~~~--------------------~~~~-~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 60 WIE--------------------REFD-AEDLDDAFLVIAATDDEELNERIAKAARERRILVNVV 103 (210)
T ss_pred hhh--------------------cccC-hhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceecc
Confidence 111 1111 2233449999999999999999999999999876544
No 136
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.16 E-value=0.11 Score=54.75 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=28.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++|.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 579999999999999999999996 68888863
No 137
>PRK07574 formate dehydrogenase; Provisional
Probab=95.12 E-value=0.079 Score=58.06 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=31.3
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..|.+++|.|||+|.+|..+|+.|...|+ ++..+|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr 223 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDR 223 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 45899999999999999999999999997 5666564
No 138
>PRK06194 hypothetical protein; Provisional
Probab=95.12 E-value=0.14 Score=52.57 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=29.3
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|||.|+ |++|.++|+.|++.|. +++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788999996 7999999999999996 5778775
No 139
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.11 E-value=0.064 Score=57.71 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=33.2
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.|.+++|||||+|-.|..+|++|...|+++|+++..
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nR 206 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSR 206 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478999999999999999999999999999999544
No 140
>PRK07680 late competence protein ComER; Validated
Probab=95.03 E-value=0.16 Score=52.60 Aligned_cols=31 Identities=16% Similarity=0.441 Sum_probs=26.1
Q ss_pred cEEEECCChHHHHHHHHHHHhCC---CeEEEEeC
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGV---RKITLLDN 396 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GV---g~ItlVD~ 396 (606)
+|.|||+|.+|+.+++.|...|. ..++++|.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 68999999999999999999984 45666544
No 141
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.03 E-value=0.067 Score=57.41 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.0
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 46899999999999999999999999997 5677665
No 142
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.03 E-value=0.16 Score=54.37 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=33.1
Q ss_pred chhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEe
Q 007355 357 LNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 357 ~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD 395 (606)
.+++.|++++|.|||.|.+|..+|++|...|+ ++++.|
T Consensus 9 ~~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~ 46 (335)
T PRK13403 9 ANVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV 46 (335)
T ss_pred CChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence 45789999999999999999999999999998 455544
No 143
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=95.02 E-value=0.15 Score=54.08 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=30.1
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhC-CCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWG-VRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~G-Vg~ItlVD~d 397 (606)
+++++|+|.|+ |++|+++++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 46789999997 889999999999987 4578887753
No 144
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.00 E-value=0.043 Score=46.94 Aligned_cols=36 Identities=33% Similarity=0.581 Sum_probs=33.9
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++++|+|+|+.|..++..|...|..++.++|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 478899999999999999999999998899999988
No 145
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.96 E-value=0.18 Score=50.64 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=30.1
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r 39 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADL 39 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence 366889999999 9999999999999997 5677665
No 146
>PRK06932 glycerate dehydrogenase; Provisional
Probab=94.93 E-value=0.07 Score=56.81 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=60.8
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
..|++++|.|||.|.+|..||+.|...|.+ +..+|.. ...++ .
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~-------------~~~~~---~-------------------- 185 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHK-------------GASVC---R-------------------- 185 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCC-------------ccccc---c--------------------
Confidence 479999999999999999999999999974 5544421 00001 0
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHcC---CCeEEEEe
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAA 506 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~ll~~~~~~~---~~p~I~aa 506 (606)
. ....++++++++|+|+.++ -+.++|.+++.-.... +..+||.+
T Consensus 186 --~---------------------~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 186 --E---------------------GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred --c---------------------ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 0 0124678999999998876 4778888887754433 34566765
No 147
>PRK04148 hypothetical protein; Provisional
Probab=94.93 E-value=0.24 Score=46.54 Aligned_cols=99 Identities=18% Similarity=0.201 Sum_probs=70.6
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
++.||+.||+| .|..+|+.|+..|. .++-+|.+. ..++.+++. .+ ..+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~----------------------~aV~~a~~~------~~--~~v 63 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE----------------------KAVEKAKKL------GL--NAF 63 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH----------------------HHHHHHHHh------CC--eEE
Confidence 45789999999 89999999999994 777777632 122323222 22 333
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEecCCce
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITAALGFDS 511 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aalG~~g 511 (606)
..++ .+--.++.+++|+|...--.+|-..-+-+++.+.+.+++--.++.+.
T Consensus 64 ~dDl------------------f~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 64 VDDL------------------FNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred ECcC------------------CCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 3333 12224567899999999999999888889999999988866665553
No 148
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.92 E-value=0.1 Score=55.07 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=32.4
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+.++||+|+|+|.+|..+++.|.+.|. +++++|..
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4678999999999999999999999997 89998763
No 149
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.92 E-value=0.22 Score=51.11 Aligned_cols=29 Identities=34% Similarity=0.527 Sum_probs=24.4
Q ss_pred cEEEECCChHHHHHHHHHHHhCC---CeEEEE
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGV---RKITLL 394 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GV---g~ItlV 394 (606)
||.+||+|.+|+.+++.|...|. ..|+++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 69999999999999999999985 245553
No 150
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.91 E-value=0.096 Score=55.77 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=30.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCC-eEEEEeC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVR-KITLLDN 396 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg-~ItlVD~ 396 (606)
..||.|||+|.+|+.+|..|+..|.. +|.|+|.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~ 36 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDV 36 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 46999999999999999999999984 7999886
No 151
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.91 E-value=0.17 Score=52.77 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.7
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..+++++|+|.|+ ||+|.++|+.|+..|. ++.++|.
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 5677899999997 9999999999999996 6777654
No 152
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.89 E-value=0.12 Score=51.42 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=30.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++++|.|+ |++|..+++.|+..|. +++++|.+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~ 38 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN 38 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999998 9999999999999996 57887753
No 153
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.89 E-value=0.073 Score=56.58 Aligned_cols=88 Identities=19% Similarity=0.299 Sum_probs=61.7
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
..|.+++|.|||.|.+|..||+.+...|. ++..+|... +. .+. |
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~-------~~-----~~~---~-------------------- 184 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG-------KN-----KNE---E-------------------- 184 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc-------cc-----ccc---C--------------------
Confidence 47999999999999999999999998887 566666510 00 000 0
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHcCC---CeEEEEe
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANTN---KITITAA 506 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~ll~~~~~~~~---~p~I~aa 506 (606)
+ ....++++++++|+|+.++ -+.++|.+++.-....= ..+||.+
T Consensus 185 --~---------------------~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~a 232 (311)
T PRK08410 185 --Y---------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG 232 (311)
T ss_pred --c---------------------eeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECC
Confidence 0 0124678899999988886 46778888887655443 3566765
No 154
>PRK06487 glycerate dehydrogenase; Provisional
Probab=94.85 E-value=0.079 Score=56.49 Aligned_cols=86 Identities=27% Similarity=0.271 Sum_probs=60.6
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
..|.+++|.|+|.|.+|..||+.|...|. ++..+|... + .. +
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~-------~-------~~---~-------------------- 185 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG-------R-------PA---R-------------------- 185 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC-------C-------cc---c--------------------
Confidence 46999999999999999999999999997 455555310 0 00 0
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHcC---CCeEEEEe
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAA 506 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~ll~~~~~~~---~~p~I~aa 506 (606)
. ....++++++++|+|+.++ -+.++|.+++.-.... +-.+||.+
T Consensus 186 --~---------------------~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 186 --P---------------------DRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred --c---------------------cccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 0 0113678899999988876 5778888888765443 33566765
No 155
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.81 E-value=0.34 Score=55.62 Aligned_cols=86 Identities=17% Similarity=0.250 Sum_probs=54.2
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhC----
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF---- 434 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~in---- 434 (606)
+.-.+++|+|.|+ |++|..+++.|++.|. ++++++.+ ..|++.+++.+.++.
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn----------------------~ekl~~l~~~l~~~~L~~~ 132 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRS----------------------AQRAESLVQSVKQMKLDVE 132 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCC----------------------HHHHHHHHHHhhhhccccc
Confidence 4456778999997 8999999999999995 45554432 113333333333211
Q ss_pred ---CCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC
Q 007355 435 ---PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (606)
Q Consensus 435 ---P~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (606)
+..+++.+..++ .+.+.+...+.+.|+||.+...
T Consensus 133 Ga~~~~~v~iV~gDL----------------tD~esI~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 133 GTQPVEKLEIVECDL----------------EKPDQIGPALGNASVVICCIGA 169 (576)
T ss_pred cccccCceEEEEecC----------------CCHHHHHHHhcCCCEEEEcccc
Confidence 112344444443 2456677788999999998743
No 156
>PRK08339 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.18 Score=51.47 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=30.1
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
|++++++|.|+ ||+|.++|+.|++.|. ++.++|.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~ 41 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN 41 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999998 6899999999999996 57787753
No 157
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.74 E-value=0.18 Score=50.41 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=42.9
Q ss_pred CCcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 364 ~~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
+++++|.| .||+|..+|+.|+..|. ++++++.+. .+.+.+.+.+.+.+|..+++.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT----------------------DRLEELKAELLARYPGIKVAVA 58 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH----------------------HHHHHHHHHHHhhCCCceEEEE
Confidence 56789998 78999999999999994 777776531 1233445555666677777777
Q ss_pred eccc
Q 007355 443 VMAI 446 (606)
Q Consensus 443 ~~~I 446 (606)
..++
T Consensus 59 ~~D~ 62 (248)
T PRK08251 59 ALDV 62 (248)
T ss_pred EcCC
Confidence 6655
No 158
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=94.70 E-value=0.15 Score=47.61 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=59.7
Q ss_pred CcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 007355 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (606)
Q Consensus 365 ~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~ 443 (606)
|.|+|.| .||+|-++|+.|++.|-.++.+++.+ + -..+.+.+.+.++.. +.++..+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~---------------~-----~~~~~~~l~~~l~~~--~~~~~~~~ 58 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS---------------E-----DSEGAQELIQELKAP--GAKITFIE 58 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS---------------C-----HHHHHHHHHHHHHHT--TSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec---------------c-----ccccccccccccccc--cccccccc
Confidence 4688898 78999999999999999999997764 1 134566666677744 47777776
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
.++ + ..++.+.-.+.+.+.....|++|.+.....
T Consensus 59 ~D~-------~--~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 59 CDL-------S--DPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp SET-------T--SHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred ccc-------c--cccccccccccccccccccccccccccccc
Confidence 654 1 122222222333333457799998866443
No 159
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.69 E-value=0.24 Score=49.48 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=28.4
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r 36 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 56789999995 9999999999999996 5666554
No 160
>PRK06949 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.16 Score=51.02 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=29.5
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|.|+ |++|..+++.|++.|. ++++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 67899999997 9999999999999997 5777654
No 161
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.65 E-value=0.13 Score=57.71 Aligned_cols=36 Identities=17% Similarity=0.463 Sum_probs=32.4
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.|.+++|+|+|+|.+|..+|+.|...|. +++++|.|
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~d 286 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEID 286 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 6899999999999999999999999998 58777654
No 162
>PRK05867 short chain dehydrogenase; Provisional
Probab=94.63 E-value=0.25 Score=49.73 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=29.4
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++++|.|+ ||+|.++|+.|+..|. ++.++|.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAAR 41 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67899999998 8999999999999997 5666654
No 163
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.61 E-value=0.8 Score=40.56 Aligned_cols=85 Identities=24% Similarity=0.302 Sum_probs=57.5
Q ss_pred EEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 007355 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMAI 446 (606)
Q Consensus 367 VllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~I 446 (606)
|+|+|+|.+|-.+++.|.. +-..++++|.|. .+++. +.+.. +. .+..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~----------------------~~~~~----~~~~~--~~--~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDP----------------------ERVEE----LREEG--VE--VIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSH----------------------HHHHH----HHHTT--SE--EEES-T
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCc----------------------HHHHH----HHhcc--cc--cccccc
Confidence 6899999999999999999 547899998854 12222 22222 22 332211
Q ss_pred CCCCCCCCCccccccccChhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHcC
Q 007355 447 PMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANT 498 (606)
Q Consensus 447 pmpgh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~e~R~ll~~~~~~~ 498 (606)
.+.+.+.+. ++++|.|+.++++.+.-..+...++..
T Consensus 50 ----------------~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 50 ----------------TDPEVLERAGIEKADAVVILTDDDEENLLIALLAREL 86 (116)
T ss_dssp ----------------TSHHHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred ----------------hhhhHHhhcCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence 244555443 688999999999988888888888763
No 164
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.60 E-value=0.23 Score=49.35 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=30.2
Q ss_pred hhcCCcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++|+|.| .|++|..+++.|+..|. ++++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678999999 59999999999999996 67776654
No 165
>PLN02602 lactate dehydrogenase
Probab=94.57 E-value=0.13 Score=55.74 Aligned_cols=32 Identities=22% Similarity=0.522 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhCC-CeEEEEeC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GV-g~ItlVD~ 396 (606)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999999998 57999986
No 166
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.56 E-value=0.081 Score=55.24 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 589999999999999999999995 69999864
No 167
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.56 E-value=0.34 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGV 388 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GV 388 (606)
..||.+||+|..|..+++.|...|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC
Confidence 4589999999999999999999983
No 168
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=94.56 E-value=0.15 Score=54.71 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=32.1
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~ 177 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDA 177 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46899999999999999999999999996 6777775
No 169
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=94.54 E-value=0.27 Score=50.25 Aligned_cols=36 Identities=31% Similarity=0.549 Sum_probs=31.0
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++|+|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~ 43 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN 43 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467899999997 8999999999999998 67777653
No 170
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.45 E-value=0.31 Score=48.47 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=28.3
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++++|.|+ |++|..+|+.|+..|.. +.+++.
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~r 39 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFNDG 39 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEeC
Confidence 56889999997 89999999999999964 555443
No 171
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.43 E-value=0.28 Score=50.67 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=26.4
Q ss_pred CcEEEECC-ChHHHHHHHHHHHh-CCCeEEEEeCC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAW-GVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~-GVg~ItlVD~d 397 (606)
.||+|+|+ |.+|..+++.+... ++.-..++|.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~ 36 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP 36 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 48999999 99999999998864 55556667765
No 172
>PLN03139 formate dehydrogenase; Provisional
Probab=94.41 E-value=0.14 Score=56.12 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=31.4
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..|.+++|.|||+|.+|..+|+.|...|++ +..+|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 469999999999999999999999999975 555664
No 173
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.41 E-value=0.18 Score=53.28 Aligned_cols=74 Identities=23% Similarity=0.284 Sum_probs=50.8
Q ss_pred EEEECCChHHHHHHHHHHHhCC-CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcE-EEEEec
Q 007355 367 CLLLGAGTLGCQVARMLMAWGV-RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA-AEGVVM 444 (606)
Q Consensus 367 VllvGaGgLGs~vA~~La~~GV-g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~-v~~~~~ 444 (606)
|.|||+|.+|+.+|..|+..|+ .+|+|+|.+ +.|++..+..|....+... .+...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~----------------------~~~~~g~~~DL~~~~~~~~~~~i~~- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN----------------------EEKAKGDALDLSHASAFLATGTIVR- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC----------------------ccHHHHHHHhHHHhccccCCCeEEE-
Confidence 5799999999999999999997 579999872 3355566666766654311 11110
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC
Q 007355 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (606)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (606)
. .+ .+-++++|+||.+...
T Consensus 58 -------------------~-~~-~~~l~~aDiVIitag~ 76 (300)
T cd00300 58 -------------------G-GD-YADAADADIVVITAGA 76 (300)
T ss_pred -------------------C-CC-HHHhCCCCEEEEcCCC
Confidence 1 11 2456889999998774
No 174
>PLN02427 UDP-apiose/xylose synthase
Probab=94.39 E-value=0.29 Score=52.88 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=32.5
Q ss_pred chhhhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 357 LNLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 357 ~~q~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++-++++..||+|.|+ |-+|+++++.|+..|--+++.+|.
T Consensus 7 ~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 7 LDGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CCCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 3446788899999996 999999999999985346777775
No 175
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.39 E-value=0.14 Score=47.65 Aligned_cols=29 Identities=34% Similarity=0.557 Sum_probs=24.8
Q ss_pred EEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 367 VllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
|+|+|+|++|+.+|-.|.+.|. ++++++.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r 29 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSR 29 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEc
Confidence 7899999999999999999774 5777555
No 176
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.37 E-value=0.23 Score=52.76 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=27.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.||.|||+|..|+.+|..|++.|. +++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r 35 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWAR 35 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeC
Confidence 479999999999999999999984 5777766
No 177
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.35 E-value=0.28 Score=52.68 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=32.2
Q ss_pred chhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEe
Q 007355 357 LNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 357 ~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD 395 (606)
.+.+.|++++|.|||+|..|..+|++|...|+ ++.+.+
T Consensus 10 ~~~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 10 ADLSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred CChhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 34678999999999999999999999999998 455543
No 178
>PRK06138 short chain dehydrogenase; Provisional
Probab=94.34 E-value=0.32 Score=48.53 Aligned_cols=34 Identities=24% Similarity=0.491 Sum_probs=28.9
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
|++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 37 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR 37 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence 67889999998 7999999999999995 5667654
No 179
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.33 E-value=0.18 Score=50.76 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=29.5
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++++|.|+ ||+|.++|+.|+..|. ++.+++.
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 356789999997 7899999999999997 5777665
No 180
>PRK06172 short chain dehydrogenase; Provisional
Probab=94.31 E-value=0.22 Score=49.95 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=29.4
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|.|+ |++|.++|+.|+..|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56899999997 7999999999999996 5777665
No 181
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.30 E-value=0.3 Score=54.94 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=67.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh--HHHHHHHHHHhh-CCCcEEEE
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF--KAMAAVKSLERI-FPAVAAEG 441 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~--Kaeaaa~~L~~i-nP~v~v~~ 441 (606)
.+|.|||+|..|..+|++|++.|. +++++|.+.=....+... ..+.|.. -+...++.+..+ .|.+-+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~-------~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK-------AKEGNTRVKGYHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh-------hhhcCCcceecCCHHHHHhcCCCCCEEEEE
Confidence 479999999999999999999997 688888744221111100 0000100 011223333332 24433333
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh--HHHHHHHHHHHcCCCeEEEEe
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRWLPTLLCANTNKITITAA 506 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--e~R~ll~~~~~~~~~p~I~aa 506 (606)
+. ||.++ ....+.+...++.-|+|||++-+. .++... ..+..+|+-+++++
T Consensus 74 v~-----~~~~v--------~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~-~~l~~~Gi~fldap 126 (470)
T PTZ00142 74 IK-----AGEAV--------DETIDNLLPLLEKGDIIIDGGNEWYLNTERRI-KRCEEKGILYLGMG 126 (470)
T ss_pred eC-----ChHHH--------HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHH-HHHHHcCCeEEcCC
Confidence 22 12211 112244555567779999998653 345544 55677888898863
No 182
>PRK07576 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.21 Score=50.90 Aligned_cols=36 Identities=8% Similarity=0.294 Sum_probs=31.0
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++++++|.|+ |++|..+++.|+..|.. +.++|.+
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 577899999998 89999999999999964 7777764
No 183
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.23 E-value=0.26 Score=49.57 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=27.8
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++|+|.|+ |++|.++|+.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467999998 5899999999999996 67787753
No 184
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.22 E-value=0.088 Score=50.35 Aligned_cols=117 Identities=18% Similarity=0.139 Sum_probs=59.2
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~ 444 (606)
+||.+||+|..|+.+|++|++.|. .+++.|.+.=...-+.. .|-..++..++.+++- ++-+..+..
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~-----------~g~~~~~s~~e~~~~~--dvvi~~v~~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAE-----------AGAEVADSPAEAAEQA--DVVILCVPD 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHH-----------TTEEEESSHHHHHHHB--SEEEE-SSS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHH-----------hhhhhhhhhhhHhhcc--cceEeeccc
Confidence 489999999999999999999996 57777754311111111 1222222333333332 233333221
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHcCCCeEEEEe
Q 007355 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANTNKITITAA 506 (606)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~e~R~ll~~~~~~~~~p~I~aa 506 (606)
. ...++.....+ +...+..-.+|+|++- +++.-..+.+.+..++..+|++.
T Consensus 68 ~----------~~v~~v~~~~~-i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 68 D----------DAVEAVLFGEN-ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp H----------HHHHHHHHCTT-HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred c----------hhhhhhhhhhH-HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 0 00001111111 2222334567888754 45555667777788888888874
No 185
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.20 E-value=0.38 Score=50.13 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=59.0
Q ss_pred cEEEECCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GV---g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
+|.|||+|.+|..+++.|...|. .++.++|.+. ..|.+. +...++.+.+
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~---------------------~~~~~~----l~~~~~~~~~--- 54 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK---------------------NEHFNQ----LYDKYPTVEL--- 54 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc---------------------HHHHHH----HHHHcCCeEE---
Confidence 69999999999999999999983 4666665521 012211 2222222221
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--cCCCeEEEEecCC
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALGF 509 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~--~~~~p~I~aalG~ 509 (606)
..+..+.++++|+||.|+-....+-++..+.. ..++.+|+..-|.
T Consensus 55 ----------------------~~~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi 101 (277)
T PRK06928 55 ----------------------ADNEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGV 101 (277)
T ss_pred ----------------------eCCHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 11223556789999999987777776666643 3456777764443
No 186
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.20 E-value=0.2 Score=52.19 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.4
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
||+|+|+|++|+.+|..|++.|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999984 5777664
No 187
>PRK05876 short chain dehydrogenase; Provisional
Probab=94.17 E-value=0.26 Score=50.76 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=29.0
Q ss_pred hcCCcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|.| .||+|.++|+.|++.|. ++.++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 6788899998 67999999999999997 4777664
No 188
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=94.15 E-value=0.18 Score=50.28 Aligned_cols=34 Identities=29% Similarity=0.299 Sum_probs=29.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
|++++|+|.|+ |++|..+|+.|+..|. ++.+++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r 37 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR 37 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 67899999998 7999999999999997 6777664
No 189
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=94.15 E-value=0.13 Score=56.22 Aligned_cols=57 Identities=21% Similarity=0.241 Sum_probs=41.4
Q ss_pred ChhhhhhhhHHhhhhhhhhhcCCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 333 DPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 333 dp~~la~~a~dlnlry~R~r~lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+....+|.+.-+=+.+.|.. + ..|++++|.|||+|.+|+.+|+.|.+.|++ +..+|+
T Consensus 91 na~aVAE~~~~~lL~l~r~~-----g-~~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 91 NAIAVVEYVFSSLLMLAERD-----G-FSLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CchHHHHHHHHHHHHHhccC-----C-CCcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 34456776666544444431 1 368999999999999999999999999974 445553
No 190
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=94.09 E-value=0.091 Score=55.45 Aligned_cols=80 Identities=28% Similarity=0.496 Sum_probs=50.4
Q ss_pred EEEEC-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCC--cEEE--E
Q 007355 367 CLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPA--VAAE--G 441 (606)
Q Consensus 367 VllvG-aGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~--v~v~--~ 441 (606)
|||.| +|++|++++++|++.|..+|.++|.|- ++--.+.+.+++.+|+ ++.. .
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E----------------------~~l~~l~~~l~~~~~~~~v~~~~~~ 58 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDE----------------------NKLYELERELRSRFPDPKVRFEIVP 58 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-H----------------------HHHHHHHHHCHHHC--TTCEEEEE-
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCCh----------------------hHHHHHHHHHhhcccccCcccccCc
Confidence 56666 567999999999999999999999843 3445555666655554 4332 2
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhc--cCCEEEEeCCC
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDT 484 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs 484 (606)
+-.+| .+.+.+..+++ +.|+||-+..-
T Consensus 59 vigDv----------------rd~~~l~~~~~~~~pdiVfHaAA~ 87 (293)
T PF02719_consen 59 VIGDV----------------RDKERLNRIFEEYKPDIVFHAAAL 87 (293)
T ss_dssp -CTSC----------------CHHHHHHHHTT--T-SEEEE----
T ss_pred eeecc----------------cCHHHHHHHHhhcCCCEEEEChhc
Confidence 22222 46778888888 78999988763
No 191
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.08 E-value=0.26 Score=49.14 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=25.9
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKIT 392 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~It 392 (606)
+.+++|+|.|+ |++|..+++.|+..|...+.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~ 33 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAV 33 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 45689999998 68999999999999965443
No 192
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.06 E-value=0.33 Score=47.96 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=28.2
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+.+++|+|+|+ |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r 38 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR 38 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence 45688999996 88999999999999974 766554
No 193
>PTZ00325 malate dehydrogenase; Provisional
Probab=94.05 E-value=0.17 Score=54.25 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=31.5
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCC-CeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GV-g~ItlVD~ 396 (606)
.++-.||+|+|+ |.+|+.+|..|+..|. .+|.|+|-
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 356679999999 9999999999997776 57999998
No 194
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.05 E-value=0.67 Score=44.08 Aligned_cols=86 Identities=20% Similarity=0.196 Sum_probs=56.7
Q ss_pred EEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 367 CLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 367 VllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
|+|+|+ |.+|..+++.|++.| -+++.+ .| ...|.+. .+.+++. ..+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~----------~R------------~~~~~~~--------~~~~~~~--~~d 47 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTAL----------VR------------SPSKAED--------SPGVEII--QGD 47 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEE----------ES------------SGGGHHH--------CTTEEEE--ESC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEE----------ec------------Cchhccc--------ccccccc--eee
Confidence 799998 999999999999999 555552 12 1223333 4555544 333
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH----HHHHHHHHHHcCCCe
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE----SRWLPTLLCANTNKI 501 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e----~R~ll~~~~~~~~~p 501 (606)
+ .+.+.+.+.++++|+||.+..... .-..+-..|...+++
T Consensus 48 ~----------------~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 48 L----------------FDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp T----------------TCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSS
T ss_pred e----------------hhhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccc
Confidence 2 456788888999999999986322 122344455666764
No 195
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=94.03 E-value=0.24 Score=51.34 Aligned_cols=33 Identities=12% Similarity=0.297 Sum_probs=26.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhC--CCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWG--VRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~G--Vg~ItlVD~d 397 (606)
.||.|||+|.+|..+++.|...+ +.-+.++|.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 37999999999999999998864 4445566664
No 196
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.00 E-value=0.34 Score=51.71 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.4
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITL 393 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~Itl 393 (606)
|++++|.|||+|..|..+|++|...|+. +++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv 31 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIV 31 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEE
Confidence 5789999999999999999999999973 444
No 197
>PLN02494 adenosylhomocysteinase
Probab=93.99 E-value=0.25 Score=55.35 Aligned_cols=36 Identities=17% Similarity=0.378 Sum_probs=32.3
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+.+++|+|+|+|.+|..+|+.+...|+ +++++|.|
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~d 286 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEID 286 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3789999999999999999999999998 68887764
No 198
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.98 E-value=0.32 Score=53.04 Aligned_cols=112 Identities=11% Similarity=0.180 Sum_probs=69.6
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCC------CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHh--hC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLER--IF 434 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GV------g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~--in 434 (606)
...||.|||+|.=|+++|..|+..|. .+++++..+. ++ . ++. .++.+++ .|
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~-~-~~~----~~~~in~~~~N 68 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IV-E-GEK----LSDIINTKHEN 68 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------cc-c-chH----HHHHHHhcCCC
Confidence 34689999999999999999999874 3666654321 11 0 222 2223332 12
Q ss_pred CCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH----cCCCeEEEEecCCc
Q 007355 435 PAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA----NTNKITITAALGFD 510 (606)
Q Consensus 435 P~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~----~~~~p~I~aalG~~ 510 (606)
+. ..||....+ ... ...++.+.++++|+||.++-+...|..+..+.. ..+.++|+++-|+.
T Consensus 69 ~~----------ylp~~~Lp~----ni~-~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 69 VK----------YLPGIKLPD----NIV-AVSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred cc----------cCCCCcCCC----ceE-EecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 10 112222211 111 124566788999999999999999999888864 22447888866654
No 199
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=93.98 E-value=0.15 Score=54.54 Aligned_cols=91 Identities=19% Similarity=0.206 Sum_probs=59.1
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La-~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~ 438 (606)
..|.+++|.|||.|.+|..||+.|. ..|+. +...|.- .. .+.. ... ++
T Consensus 141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~-V~~~~~~---------------------~~--~~~~----~~~--~~- 189 (323)
T PRK15409 141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMP-ILYNARR---------------------HH--KEAE----ERF--NA- 189 (323)
T ss_pred CCCCCCEEEEEcccHHHHHHHHHHHhcCCCE-EEEECCC---------------------Cc--hhhH----Hhc--Cc-
Confidence 4699999999999999999999997 77763 4454430 00 0000 000 11
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHc---CCCeEEEEe
Q 007355 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCAN---TNKITITAA 506 (606)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~ll~~~~~~---~~~p~I~aa 506 (606)
+ ...++++++++|+|+.++ -+.++|.+++.--.. .+-.+||.+
T Consensus 190 -~------------------------~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~a 236 (323)
T PRK15409 190 -R------------------------YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAG 236 (323)
T ss_pred -E------------------------ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECC
Confidence 0 124678899999998876 577888888764333 234566765
No 200
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.97 E-value=0.36 Score=51.00 Aligned_cols=33 Identities=33% Similarity=0.401 Sum_probs=29.1
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
..||+|+|+|++|+.+|-.|.+.|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3579999999999999999999994 78888874
No 201
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=93.95 E-value=0.24 Score=49.33 Aligned_cols=34 Identities=24% Similarity=0.497 Sum_probs=28.6
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
|++++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 56889999995 8899999999999986 5666654
No 202
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.95 E-value=0.24 Score=52.18 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=29.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCC-CeEEEEeC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GV-g~ItlVD~ 396 (606)
..+|+|||+|.+|..+|+.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3689999999999999999999997 47888876
No 203
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.93 E-value=0.4 Score=48.40 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=31.0
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 67899999999 7999999999999998 78887764
No 204
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.91 E-value=0.63 Score=51.30 Aligned_cols=97 Identities=21% Similarity=0.312 Sum_probs=64.5
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
+...+|+|+|+|.+|..+++.|...|. .++++|.|. .+.+. +++..+++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~----------------------~~~~~----~~~~~~~~~~-- 279 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP----------------------ERAEE----LAEELPNTLV-- 279 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH----------------------HHHHH----HHHHCCCCeE--
Confidence 567899999999999999999999886 578887632 12222 2222334332
Q ss_pred EecccCCCCCCCCCccccccccChhhH-HHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEE
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRL-TDLILSHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l-~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I 503 (606)
+..+. .+.+.+ +.-++++|.|+.++++.+.-.....+|+..+.+.|
T Consensus 280 i~gd~----------------~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~i 326 (453)
T PRK09496 280 LHGDG----------------TDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKV 326 (453)
T ss_pred EECCC----------------CCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeE
Confidence 22111 133444 33467899999999887777777777887776533
No 205
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.86 E-value=0.11 Score=55.57 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=28.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+||.|||+|..|+.+|..++..| -.++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG-~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHG-LDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCCH
Confidence 57999999999999999999999 5677888643
No 206
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=93.84 E-value=0.14 Score=47.66 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=51.1
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
-...||.|||+|-+|..+++.|.+.|. +|.-| | .+. .+.++++.+..+...+.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~--------srs--~~sa~~a~~~~~~~~~~- 60 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGH-EVVGV---------------Y--------SRS--PASAERAAAFIGAGAIL- 60 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------S--------SCH--H-HHHHHHC--TT-----
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------E--------eCC--ccccccccccccccccc-
Confidence 346789999999999999999999995 33321 1 222 12334444444433221
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHc----CCCeEEEE
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCAN----TNKITITA 505 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~----~~~p~I~a 505 (606)
++.+.++.+|+||.++=.....-....++.. .++.+++.
T Consensus 61 -------------------------~~~~~~~~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHt 103 (127)
T PF10727_consen 61 -------------------------DLEEILRDADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHT 103 (127)
T ss_dssp --------------------------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES
T ss_pred -------------------------ccccccccCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEEC
Confidence 2235678999999998555666666666654 45666654
No 207
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.80 E-value=0.12 Score=43.20 Aligned_cols=32 Identities=25% Similarity=0.658 Sum_probs=28.6
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
||+|+|+|-+|+++|..|...| .++|+++...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g-~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELG-KEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT-SEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHhC-cEEEEEeccc
Confidence 6999999999999999999999 5888887744
No 208
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.79 E-value=0.31 Score=54.50 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=31.9
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++|+|+|+|++|.++|+.|...|. +++++|..
T Consensus 13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 13 DWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4567899999999999999999999997 59998864
No 209
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=93.79 E-value=0.26 Score=49.66 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=31.0
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
-++++++++|.|+ |++|..+|+.|+..|. +++++|.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 4578899999995 9999999999999997 6777665
No 210
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=93.78 E-value=0.42 Score=43.40 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=29.3
Q ss_pred hccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEEe--cCCc
Q 007355 472 ILSHDVIFLLTDTRESRWLPTLLCANTNKITITAA--LGFD 510 (606)
Q Consensus 472 i~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~aa--lG~~ 510 (606)
+.+.|+||.|+++..++.+...+ .+.|+.+|+.+ +.++
T Consensus 64 ~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~~R~~ 103 (121)
T PF01118_consen 64 LSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGDFRLD 103 (121)
T ss_dssp HTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSSTTTTS
T ss_pred hhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHHHhCC
Confidence 38999999999998888776666 78888999863 4444
No 211
>PLN02240 UDP-glucose 4-epimerase
Probab=93.78 E-value=0.36 Score=50.95 Aligned_cols=34 Identities=32% Similarity=0.564 Sum_probs=29.4
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|.|+ |.+|+.+++.|+..|. +++++|.
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~~ 37 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVIDN 37 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999987 8999999999999995 6777774
No 212
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.75 E-value=0.096 Score=54.65 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+||.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999995 688888753
No 213
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.73 E-value=0.32 Score=52.27 Aligned_cols=106 Identities=14% Similarity=0.136 Sum_probs=61.3
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~ 444 (606)
.||.|+|+|..|+.+|..|++.| +++++..+.- ++ +.+++...... ....
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~----------------------~~----~~i~~~~~~~~--~l~~ 57 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAE----------------------TA----DDINDNHRNSR--YLGN 57 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHH----------------------HH----HHHHhcCCCcc--cCCC
Confidence 57999999999999999999988 4555433210 11 11221110000 0000
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcC--CCeEEEEecCCc
Q 007355 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT--NKITITAALGFD 510 (606)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~--~~p~I~aalG~~ 510 (606)
.+..|.. .. ...++.+.++++|+||.++-+...+..+..+.... +.++|+..-|+.
T Consensus 58 ~~~l~~~---------i~-~t~d~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 58 DVVLSDT---------LR-ATTDFAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred CcccCCC---------eE-EECCHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 0000000 00 12334456789999999999999999888876533 346777654543
No 214
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.73 E-value=0.23 Score=53.05 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=30.2
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++|+|.|+ ||+|.++|+.|+..|. ++.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467889999999 8999999999999996 4777665
No 215
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.70 E-value=0.24 Score=47.96 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=28.7
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
..|.+++|+|+|.|-+|.-+|+.|.++| -+++++|-|.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DP 56 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDP 56 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECCh
Confidence 3578999999999999999999999999 6678877765
No 216
>PRK10637 cysG siroheme synthase; Provisional
Probab=93.69 E-value=0.23 Score=55.54 Aligned_cols=95 Identities=18% Similarity=0.133 Sum_probs=66.6
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.|++++|+|||.|.+|..=++.|...|. +||+|-++. + +++ .. +.+ .. +++
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-~~~--------~~----l~~-~~--~i~ 59 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-PQF--------TA----WAD-AG--MLT 59 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-HHH--------HH----HHh-CC--CEE
Confidence 5889999999999999999999999994 788864431 1 111 11 111 11 233
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
-+...+ ..+.++++++||.|||+.+.-..+...|...++++-.+
T Consensus 60 ~~~~~~---------------------~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 60 LVEGPF---------------------DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred EEeCCC---------------------ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEEC
Confidence 332211 13456899999999999998888999999999876443
No 217
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.67 E-value=0.53 Score=49.89 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=26.6
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
||.|+|+|.+|+.+|..|++.| .++++++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r 31 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGR 31 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEec
Confidence 6999999999999999999998 55778765
No 218
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.64 E-value=0.46 Score=47.03 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=28.2
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEe
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD 395 (606)
.|.+++++|+|+ |++|..+++.|+..|...+.+++
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~ 37 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYD 37 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 366789999997 89999999999999976444324
No 219
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.31 Score=48.51 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=30.3
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 466889999997 9999999999999997 57776653
No 220
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.59 E-value=0.33 Score=49.31 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=31.5
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++++|.|+ |++|..+|+.|+..|. +++++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467899999997 9999999999999997 78887764
No 221
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.56 E-value=0.058 Score=56.55 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+||.|||+|..|+.+|..|+..|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999995 699988753
No 222
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=93.56 E-value=0.4 Score=50.36 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=28.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+.+++|+|.|+ ||+|.++++.|++.| -++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEEC
Confidence 45788999996 899999999999999 46777764
No 223
>PRK06181 short chain dehydrogenase; Provisional
Probab=93.53 E-value=0.53 Score=47.46 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=27.1
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57999998 9999999999999996 7777765
No 224
>PRK07890 short chain dehydrogenase; Provisional
Probab=93.52 E-value=0.4 Score=48.03 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|.|+ |++|..+|+.|+.-|. ++.++|.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999997 7999999999999997 6788774
No 225
>PRK06940 short chain dehydrogenase; Provisional
Probab=93.50 E-value=0.48 Score=48.76 Aligned_cols=31 Identities=32% Similarity=0.539 Sum_probs=26.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++.++|.|+||+|.++|+.|+ .| .++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeC
Confidence 467899999999999999996 78 57888765
No 226
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.49 E-value=0.38 Score=51.18 Aligned_cols=29 Identities=41% Similarity=0.643 Sum_probs=26.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEE
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLL 394 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlV 394 (606)
.||+|+|+|++||..+..|++.| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 37999999999999999999999 777773
No 227
>PRK06199 ornithine cyclodeaminase; Validated
Probab=93.47 E-value=0.38 Score=52.64 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=61.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHh--CCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCc-EEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAW--GVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV-AAE 440 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~--GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v-~v~ 440 (606)
.++++|+|+|.-|..-++.++.. +++++.++|. ...|+++.++++.+.++++ ++.
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r----------------------~~~~a~~f~~~~~~~~~~~~~v~ 212 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGR----------------------GQKSLDSFATWVAETYPQITNVE 212 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECC----------------------CHHHHHHHHHHHHHhcCCCceEE
Confidence 57999999999999999999874 4889998665 4558889999998877654 354
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
.. +..++.++++|+|+.||-+.+
T Consensus 213 ~~-----------------------~s~~eav~~ADIVvtaT~s~~ 235 (379)
T PRK06199 213 VV-----------------------DSIEEVVRGSDIVTYCNSGET 235 (379)
T ss_pred Ee-----------------------CCHHHHHcCCCEEEEccCCCC
Confidence 43 346778899999999997644
No 228
>PRK06198 short chain dehydrogenase; Provisional
Probab=93.47 E-value=0.29 Score=49.25 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=32.6
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++|+|.|+ |++|..+++.|+..|..++.++|.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 467899999997 7999999999999999878888764
No 229
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.46 E-value=0.27 Score=54.37 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=31.6
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..|.+++|.|+|.|.+|..+|+.|...|. ++..+|.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~ 182 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDI 182 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 46999999999999999999999999997 5666663
No 230
>PRK07109 short chain dehydrogenase; Provisional
Probab=93.44 E-value=0.32 Score=51.86 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=30.0
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++|+|.|+ ||+|..+|+.|++.|. ++.+++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 467889999997 8999999999999996 5777664
No 231
>PRK06196 oxidoreductase; Provisional
Probab=93.43 E-value=0.41 Score=50.20 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=29.8
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++|+|.|+ ||+|.++|+.|+..|. ++++++.
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R 58 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPAR 58 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 356789999998 8899999999999996 5677665
No 232
>PRK05872 short chain dehydrogenase; Provisional
Probab=93.43 E-value=0.3 Score=50.81 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=30.7
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++|+|.|+ ||+|..+|+.|+..|. ++.+++.+
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 42 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE 42 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467899999997 8899999999999997 67777653
No 233
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.43 E-value=0.36 Score=51.29 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=28.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.||+|||+|.+|+.+|..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999994 68888864
No 234
>PRK06914 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.38 Score=49.12 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=27.3
Q ss_pred cCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 363 ~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++++|.|+ |++|..+++.|+..|. ++++++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence 4567899985 8999999999999996 46666553
No 235
>PRK05717 oxidoreductase; Validated
Probab=93.38 E-value=0.38 Score=48.47 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=30.6
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++|+|.|+ |++|.++|+.|+..|. ++.++|.+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 356789999996 8999999999999995 77887754
No 236
>PLN00106 malate dehydrogenase
Probab=93.38 E-value=0.2 Score=53.68 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=31.8
Q ss_pred cCCcEEEECC-ChHHHHHHHHHHHhCC-CeEEEEeCCc
Q 007355 363 SSRKCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGR 398 (606)
Q Consensus 363 ~~~kVllvGa-GgLGs~vA~~La~~GV-g~ItlVD~d~ 398 (606)
...||+|+|+ |.+|+.+|..|+..|. .+|.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3569999999 9999999999998887 5899999855
No 237
>PRK08589 short chain dehydrogenase; Validated
Probab=93.37 E-value=0.38 Score=49.21 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=29.7
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++++++|.|+ ||+|.++|+.|+..|. ++.++|.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r 38 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDI 38 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999998 8999999999999995 5666654
No 238
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.33 E-value=0.13 Score=49.93 Aligned_cols=93 Identities=23% Similarity=0.309 Sum_probs=60.4
Q ss_pred hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcE
Q 007355 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (606)
Q Consensus 359 q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~ 438 (606)
...|.+++|.|+|+|.+|..||+.|...|. ++..+|+.. +... ..... .
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~-----------------------~~~~---~~~~~--~-- 79 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP-----------------------KPEE---GADEF--G-- 79 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC-----------------------HHHH---HHHHT--T--
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC-----------------------Chhh---hcccc--c--
Confidence 468999999999999999999999999998 777777622 1111 00110 0
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC-ChHHHHHHHHHHHcC---CCeEEEEe
Q 007355 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD-TRESRWLPTLLCANT---NKITITAA 506 (606)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD-s~e~R~ll~~~~~~~---~~p~I~aa 506 (606)
+ ....++++++++|+|+.+.- +.+++.+++.-.... +..+||.+
T Consensus 80 ~------------------------~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 80 V------------------------EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp E------------------------EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred c------------------------eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEecc
Confidence 1 23466788999999998875 666777766654433 33556654
No 239
>PRK12937 short chain dehydrogenase; Provisional
Probab=93.33 E-value=0.56 Score=46.52 Aligned_cols=30 Identities=33% Similarity=0.458 Sum_probs=26.2
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKI 391 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~I 391 (606)
+++++|+|.|+ |++|..+|+.|+..|...+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~ 33 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVA 33 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 56789999996 9999999999999997543
No 240
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=93.31 E-value=0.58 Score=46.99 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=28.9
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.|++++++|.|+ |++|..+|+.|++.|. ++.++|.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcC
Confidence 367889999996 7899999999999996 6666554
No 241
>PLN02253 xanthoxin dehydrogenase
Probab=93.30 E-value=0.6 Score=47.72 Aligned_cols=36 Identities=22% Similarity=0.439 Sum_probs=30.1
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.++++++++|.|+ |++|.++|+.|+..|. ++.++|.
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 3577899999996 6899999999999996 5777664
No 242
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=93.29 E-value=0.46 Score=49.52 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=26.8
Q ss_pred cCCcEEEECCChHHHHHHHHHHHh--CCCeEEEEeCC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAW--GVRKITLLDNG 397 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~--GVg~ItlVD~d 397 (606)
+..||.|||+|.+|..+++.|... |+.-..++|.+
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 457899999999999999999874 44333465654
No 243
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.27 E-value=0.33 Score=51.50 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=29.5
Q ss_pred cEEEECCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGV-RKITLLDNG 397 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GV-g~ItlVD~d 397 (606)
||.|||+|.+|+.+|..|+..|+ .++.++|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 79999999999999999999996 789999963
No 244
>PLN02306 hydroxypyruvate reductase
Probab=93.27 E-value=0.27 Score=53.97 Aligned_cols=106 Identities=17% Similarity=0.235 Sum_probs=63.5
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCC-Cc
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP-AV 437 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La-~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP-~v 437 (606)
..|.+++|.|||.|.+|..+|+.|. ..|. ++..+|...- ....+ .. ... | ..++.... .+
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~~--~~~~~-~~---~~~---~--------~~l~~~~~~~~ 222 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQS--TRLEK-FV---TAY---G--------QFLKANGEQPV 222 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCCc--hhhhh-hh---hhh---c--------ccccccccccc
Confidence 4699999999999999999999985 7787 5667775210 00000 00 000 0 00000000 00
Q ss_pred EEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHcC---CCeEEEEe
Q 007355 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANT---NKITITAA 506 (606)
Q Consensus 438 ~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~ll~~~~~~~---~~p~I~aa 506 (606)
.+ .....++++++++|+|+.++ -+.+++.+++.-.... +..+||.+
T Consensus 223 ~~-----------------------~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 223 TW-----------------------KRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNAS 272 (386)
T ss_pred cc-----------------------cccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECC
Confidence 00 01246889999999999854 5778898888765433 34567765
No 245
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.24 E-value=0.51 Score=49.68 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=27.8
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+|.|||+|..|+.+|++|++.|. +++++|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999994 567777754
No 246
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.22 E-value=0.32 Score=48.95 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=31.2
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++++|+|+|+ |++|.++++.|+..|. ++.++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 478899999999 9999999999999995 57777654
No 247
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=93.20 E-value=0.63 Score=48.54 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=49.8
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
++.++++|-|| +|+|-++|+.|++-| .++.||-. -+.|-+.+++.|++.+ +++++
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR----------------------~~~kL~~la~~l~~~~-~v~v~ 59 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRG-YNLILVAR----------------------REDKLEALAKELEDKT-GVEVE 59 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeC----------------------cHHHHHHHHHHHHHhh-CceEE
Confidence 56789999997 799999999999999 55666433 3457899999999988 88888
Q ss_pred EEeccc
Q 007355 441 GVVMAI 446 (606)
Q Consensus 441 ~~~~~I 446 (606)
.++.++
T Consensus 60 vi~~DL 65 (265)
T COG0300 60 VIPADL 65 (265)
T ss_pred EEECcC
Confidence 887765
No 248
>PRK06128 oxidoreductase; Provisional
Probab=93.19 E-value=0.44 Score=49.63 Aligned_cols=35 Identities=31% Similarity=0.348 Sum_probs=29.1
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEe
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD 395 (606)
.+|++++|+|.|+ |++|..+|+.|++.|.. +.+++
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~ 86 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGAD-IALNY 86 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEe
Confidence 4688899999997 89999999999999974 44443
No 249
>PRK07774 short chain dehydrogenase; Provisional
Probab=93.12 E-value=0.44 Score=47.48 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=30.3
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~ 39 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN 39 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356789999998 9999999999999995 57776653
No 250
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.09 E-value=0.58 Score=50.57 Aligned_cols=111 Identities=14% Similarity=0.276 Sum_probs=67.4
Q ss_pred cEEEECCChHHHHHHHHHHHhCC-------CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcE
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGV-------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVA 438 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GV-------g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~ 438 (606)
||.|||+|.-|+++|..|+..|. .+++++..+. ++ + +. ...+.+.+...+.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~-~-~~----~~~~~in~~~~n~~ 59 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EI-E-GR----NLTEIINTTHENVK 59 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------cc-C-CH----HHHHHHHhcCCCcc
Confidence 68999999999999999998873 4566654421 11 0 11 11233332211111
Q ss_pred EEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHH--cCCCeEEEEecCCc
Q 007355 439 AEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCA--NTNKITITAALGFD 510 (606)
Q Consensus 439 v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~--~~~~p~I~aalG~~ 510 (606)
. .||-...+ ... -..++++.++++|+||.++=+...|..+..+.. ..++++|+++-|++
T Consensus 60 y--------lpgi~Lp~----~i~-at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie 120 (342)
T TIGR03376 60 Y--------LPGIKLPA----NLV-AVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLE 120 (342)
T ss_pred c--------cCCCcCCC----CeE-EECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcc
Confidence 0 11111100 001 124677888999999999999999998888753 34568898876664
No 251
>PRK08303 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.52 Score=49.62 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=30.9
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.|+++.++|.|+ +|+|.++|+.|++.|. ++.+++.+
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 367899999999 5899999999999996 67777764
No 252
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.96 E-value=0.83 Score=50.35 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=57.4
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
+|+|+|+|.+|..+++.|...|. .++++|.+. .+++.+.+. .+ +..+..+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~----------------------~~~~~~~~~-----~~--~~~~~gd 51 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDE----------------------ERLRRLQDR-----LD--VRTVVGN 51 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCH----------------------HHHHHHHhh-----cC--EEEEEeC
Confidence 79999999999999999999986 567777632 122222221 12 2222211
Q ss_pred cCCCCCCCCCccccccccChhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHcC
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANT 498 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~e~R~ll~~~~~~~ 498 (606)
. .+...+++. +.++|.||.++++.+.-..+...++..
T Consensus 52 ~----------------~~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~ 89 (453)
T PRK09496 52 G----------------SSPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSL 89 (453)
T ss_pred C----------------CCHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHh
Confidence 1 234555555 788999999998877766666677765
No 253
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.96 E-value=0.28 Score=51.77 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=29.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
.+|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999996 799988753
No 254
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=92.94 E-value=0.74 Score=46.39 Aligned_cols=93 Identities=23% Similarity=0.206 Sum_probs=62.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~ 444 (606)
.++.|+|.|-+|+.+|+.|+..| -++++- +...+|+.+++.. .+.|. +++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag-~eV~ig----------------------s~r~~~~~~a~a~--~l~~~--i~~--- 51 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAG-HEVIIG----------------------SSRGPKALAAAAA--ALGPL--ITG--- 51 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCC-CeEEEe----------------------cCCChhHHHHHHH--hhccc--ccc---
Confidence 47899999999999999999999 334430 0023344333332 22232 222
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcC-CCeEEEEecC
Q 007355 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANT-NKITITAALG 508 (606)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~-~~p~I~aalG 508 (606)
-..++..+.+|+||.+.=-....-.+..+.... +|.+|++...
T Consensus 52 ---------------------~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 52 ---------------------GSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred ---------------------CChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 233556788999999998777777777777656 5999998543
No 255
>PRK05855 short chain dehydrogenase; Validated
Probab=92.93 E-value=0.49 Score=53.16 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=31.2
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..+++.+++|+|+ ||+|..+|+.|+..|.. +.++|.
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r 347 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI 347 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 5678889999997 99999999999999975 777664
No 256
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.89 E-value=0.52 Score=46.44 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=29.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+.+++|+|.|+ |++|..+++.|+..|.. +++++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 45678999997 89999999999999986 7777664
No 257
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.87 E-value=0.58 Score=46.25 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=29.2
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r 37 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSR 37 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56889999998 6799999999999997 6777665
No 258
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.83 E-value=0.15 Score=50.66 Aligned_cols=37 Identities=27% Similarity=0.466 Sum_probs=32.7
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
..|++++|+|+|.|.+|..+|+.|...|. +++++|.+
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 46889999999999999999999999996 67787754
No 259
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=92.83 E-value=0.64 Score=47.94 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=26.8
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCC---CeEEEEeC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGV---RKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GV---g~ItlVD~ 396 (606)
.+.||.|||+|.+|+.+++.|...|+ .++.++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 35689999999999999999999873 23555443
No 260
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.80 E-value=0.62 Score=45.73 Aligned_cols=36 Identities=33% Similarity=0.544 Sum_probs=30.9
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++++++|.|+ |++|..+++.|+..|.+ +.++|.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r~ 40 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGRG 40 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeCC
Confidence 466889999997 99999999999999975 7887764
No 261
>PRK07102 short chain dehydrogenase; Provisional
Probab=92.75 E-value=0.73 Score=45.96 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=27.0
Q ss_pred CcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++|.| .|++|..+++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 5789999 59999999999999996 57777763
No 262
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=92.75 E-value=0.25 Score=50.38 Aligned_cols=88 Identities=17% Similarity=0.305 Sum_probs=63.0
Q ss_pred hcCCcEEEE-CCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 362 LSSRKCLLL-GAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 362 L~~~kVllv-GaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
+.++.++++ ||||+|-.+++.|+.-|+..+.+.|+ .|. ..+..+|++++|.+++.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~---------------~En---------~~a~akL~ai~p~~~v~ 58 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDS---------------EEN---------PEAIAKLQAINPSVSVI 58 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhh---------------hhC---------HHHHHHHhccCCCceEE
Confidence 456666665 68999999999999999999988554 111 24556799999999999
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT 482 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t 482 (606)
-+..++-+ ..+.+...++.-..+..-|++|+..
T Consensus 59 F~~~DVt~---------~~~~~~~f~ki~~~fg~iDIlINgA 91 (261)
T KOG4169|consen 59 FIKCDVTN---------RGDLEAAFDKILATFGTIDILINGA 91 (261)
T ss_pred EEEecccc---------HHHHHHHHHHHHHHhCceEEEEccc
Confidence 99887721 2223333444555566779998764
No 263
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.75 E-value=0.28 Score=52.25 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=29.7
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCC-CeEEEEeCC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNG 397 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GV-g~ItlVD~d 397 (606)
||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 8999999 9999999999998887 689999985
No 264
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=92.74 E-value=0.68 Score=46.95 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=29.1
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++++++|.|+ |++|..+++.|+..|.. +.++|.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~ 42 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDI 42 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 567889999997 68999999999999975 666553
No 265
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.74 E-value=0.49 Score=47.64 Aligned_cols=36 Identities=31% Similarity=0.434 Sum_probs=30.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+.+++++|.|+ |++|..+|+.|+..|. ++.++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence 56789999996 9999999999999996 577777654
No 266
>PRK06046 alanine dehydrogenase; Validated
Probab=92.73 E-value=0.52 Score=50.40 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=54.7
Q ss_pred CCcEEEECCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La-~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
.++|.|+|+|+.|...++.|. .-+++.+.++|. ...+++.+++.+++.++ +++..+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~~~~-~~v~~~ 185 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDR----------------------TKSSAEKFVERMSSVVG-CDVTVA 185 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECC----------------------CHHHHHHHHHHHHhhcC-ceEEEe
Confidence 579999999999999999998 457889998776 34466777777765432 333332
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
++.++.++ +|+|+.||-+.+
T Consensus 186 -----------------------~~~~~~l~-aDiVv~aTps~~ 205 (326)
T PRK06046 186 -----------------------EDIEEACD-CDILVTTTPSRK 205 (326)
T ss_pred -----------------------CCHHHHhh-CCEEEEecCCCC
Confidence 12345555 999999997754
No 267
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.71 E-value=0.51 Score=50.06 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=30.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.||.|+|+|.+|+.+|..|+..|..+++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999999999878999997
No 268
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.69 E-value=0.75 Score=46.22 Aligned_cols=32 Identities=38% Similarity=0.573 Sum_probs=27.6
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|.|+ |++|..+++.|+..|. +++++|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r 34 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI 34 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 468999998 8999999999999995 6787765
No 269
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.66 E-value=0.74 Score=48.17 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=26.3
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++|+|.|+ |++|+++++.|+..|. ++++++.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r 37 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVR 37 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEc
Confidence 578999996 8999999999999996 4555444
No 270
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.64 E-value=0.57 Score=47.24 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.4
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 33 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDI 33 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 57999986 8899999999999996 5666553
No 271
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.63 E-value=0.96 Score=44.90 Aligned_cols=36 Identities=33% Similarity=0.438 Sum_probs=30.2
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++++|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356788999995 5899999999999997 78888754
No 272
>PRK12829 short chain dehydrogenase; Provisional
Probab=92.63 E-value=0.65 Score=46.62 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=30.5
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++++|.|+ |++|..+++.|+.-|.. +++++.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r 43 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDV 43 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeC
Confidence 477899999998 89999999999999974 777774
No 273
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=92.57 E-value=0.46 Score=48.11 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=28.1
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEE
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlV 394 (606)
.+++++|+|.|+ ||+|.++|+.|+..|.. ++++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 38 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT 38 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 477899999998 88999999999999974 5554
No 274
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.54 E-value=0.53 Score=51.68 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=53.4
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCC------eEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhC-C
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVR------KITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIF-P 435 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg------~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~in-P 435 (606)
-.||.|+|+ |.+|+.+|..|+..|+- .|+|+|.|. .+.|++.-+.-|..-. |
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~--------------------~~~~a~g~a~DL~d~a~~ 103 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSER--------------------SKEALEGVAMELEDSLYP 103 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCc--------------------cchhhhHHHHHHHHhhhh
Confidence 469999999 99999999999999984 477776644 3556666666666544 4
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC
Q 007355 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT 484 (606)
Q Consensus 436 ~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs 484 (606)
... . + .| ... ..+-++++|+||.+...
T Consensus 104 ~~~-~-v--~i-----------------~~~-~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 104 LLR-E-V--SI-----------------GID-PYEVFEDADWALLIGAK 130 (387)
T ss_pred hcC-c-e--EE-----------------ecC-CHHHhCCCCEEEECCCC
Confidence 321 1 1 11 111 13556899999998765
No 275
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.53 E-value=0.47 Score=48.31 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=29.1
Q ss_pred hcCCcEEEECC---ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa---GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++.++|.|+ +|+|.++|+.|++.|. ++.+++.
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r 41 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYA 41 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecC
Confidence 56889999998 5999999999999997 5767654
No 276
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=92.53 E-value=0.81 Score=45.57 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=26.1
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKIT 392 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~It 392 (606)
++++.|+|.|+ |++|..+|+.|+..|...+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~ 32 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVA 32 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEE
Confidence 45788999996 99999999999999975444
No 277
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=92.52 E-value=0.43 Score=50.80 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=52.5
Q ss_pred CCcEEEECCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~-~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
..++.|+|+|.-|-.-++.|+. .++.+|.++|. ...+++..++++++ . ++.+...
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r----------------------~~~~~~~~~~~~~~-~-~~~v~~~ 183 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSR----------------------SPERAEAFAARLRD-L-GVPVVAV 183 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-S----------------------SHHHHHHHHHHHHC-C-CTCEEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEcc----------------------ChhHHHHHHHhhcc-c-cccceec
Confidence 3589999999999999998876 67899999765 34578899999998 4 6666554
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
++.++.++++|+|+.||-+.+
T Consensus 184 -----------------------~~~~~av~~aDii~taT~s~~ 204 (313)
T PF02423_consen 184 -----------------------DSAEEAVRGADIIVTATPSTT 204 (313)
T ss_dssp -----------------------SSHHHHHTTSSEEEE----SS
T ss_pred -----------------------cchhhhcccCCEEEEccCCCC
Confidence 345778899999999998765
No 278
>PLN02852 ferredoxin-NADP+ reductase
Probab=92.51 E-value=0.56 Score=53.12 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=34.7
Q ss_pred cCCcEEEECCChHHHHHHHHHHH--hCCCeEEEEeCCcccccCCCcC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMA--WGVRKITLLDNGRVAMSNPLRQ 407 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~--~GVg~ItlVD~d~Ve~sNl~RQ 407 (606)
..+||+|||+|..|.+.|+.|++ .| .+++|+|.... +-.+.|.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p~-pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLPT-PFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCCC-CcceEee
Confidence 46789999999999999999997 46 58999998764 3445553
No 279
>PRK06841 short chain dehydrogenase; Provisional
Probab=92.49 E-value=0.65 Score=46.52 Aligned_cols=35 Identities=29% Similarity=0.573 Sum_probs=30.3
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++|+|.|+ |++|..+|+.|+..|. ++.+++.+
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~ 48 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRS 48 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67899999997 9999999999999997 57777653
No 280
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=92.48 E-value=0.6 Score=47.10 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=29.9
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++++|+|.|+ |++|..+|+.|+..|.. +.+++.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~ 48 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG 48 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 478899999998 78999999999999974 5565553
No 281
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=92.48 E-value=0.22 Score=50.67 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=34.8
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
..|+++||+|.|.|.+|..+|+.|...|.+-+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 56889999999999999999999999998888898875
No 282
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.48 E-value=0.81 Score=51.77 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.||.|||+|..|+.+|..|++.|. .++++|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 379999999999999999999997 78888873
No 283
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.47 E-value=0.59 Score=46.02 Aligned_cols=31 Identities=32% Similarity=0.373 Sum_probs=25.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKIT 392 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~It 392 (606)
++.++|+|+|+ |++|..+++.|+..|...+.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVV 35 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEE
Confidence 45678999986 99999999999999985433
No 284
>PRK07035 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.56 Score=46.98 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=30.5
Q ss_pred hhcCCcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++|+|.| .|++|.++++.|++.|. ++.++|.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36788999999 57899999999999996 78887763
No 285
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.46 E-value=0.67 Score=46.66 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=31.3
Q ss_pred hhcCCcEEEECCC---hHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 361 ~L~~~kVllvGaG---gLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
.+++++|+|.|++ |+|..+|+.|+..|. ++.+++...
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~ 41 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSP 41 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCc
Confidence 3577899999995 799999999999996 788887653
No 286
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.85 Score=45.47 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=28.6
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++++++|.|+ |++|..+++.|+..|. ++++++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 366789999997 8999999999999996 4555443
No 287
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.45 E-value=0.47 Score=48.04 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=29.6
Q ss_pred hhcCCcEEEECCC---hHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGaG---gLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++++++|.|++ |+|..+|+.|++.|.. +.+++.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~-Vi~~~r 41 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGAT-VIYTYQ 41 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEecC
Confidence 3678999999995 9999999999999964 666654
No 288
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=92.45 E-value=0.6 Score=46.87 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.6
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 477899999997 7899999999999997 78888774
No 289
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=92.44 E-value=0.62 Score=49.38 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=59.3
Q ss_pred CCcEEEECCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~-~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
.+++.|+|+|.-|-.-++.++. .++++|.++|. ...|+++.++++++.. +++++..
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~f~~~~~~~~-~~~v~~~ 173 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR----------------------NFDHARAFAERFSKEF-GVDIRPV 173 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHHhc-CCcEEEe
Confidence 6899999999999999888875 46778888654 4557888888888743 3444432
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
+..++.+.++|+|+.+|-+.+
T Consensus 174 -----------------------~~~~eav~~aDIV~taT~s~~ 194 (301)
T PRK06407 174 -----------------------DNAEAALRDADTITSITNSDT 194 (301)
T ss_pred -----------------------CCHHHHHhcCCEEEEecCCCC
Confidence 346778899999999999865
No 290
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.43 E-value=0.41 Score=49.38 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=27.9
Q ss_pred EEEECC-ChHHHHHHHHHHHhC--C-CeEEEEeCCc
Q 007355 367 CLLLGA-GTLGCQVARMLMAWG--V-RKITLLDNGR 398 (606)
Q Consensus 367 VllvGa-GgLGs~vA~~La~~G--V-g~ItlVD~d~ 398 (606)
|.|||+ |..|+.+|..|+..| . .+|+|+|.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 579999 999999999999998 4 6899998643
No 291
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.37 E-value=0.74 Score=46.57 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=29.4
Q ss_pred hhcCCcEEEECCC---hHHHHHHHHHHHhCCCeEEEEe
Q 007355 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 361 ~L~~~kVllvGaG---gLGs~vA~~La~~GVg~ItlVD 395 (606)
+|++++|+|.|++ |+|.++|+.|+..|. ++.+.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~ 39 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY 39 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence 6889999999995 899999999999997 456555
No 292
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=92.34 E-value=1 Score=47.77 Aligned_cols=107 Identities=14% Similarity=0.227 Sum_probs=62.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCC--eEEEEeCCcccccC--CCcCcCCCcchhcC---CCChHHHHHHHHHHhhCCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRVAMSN--PLRQSLYTLDDCLN---GGDFKAMAAVKSLERIFPAV 437 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg--~ItlVD~d~Ve~sN--l~RQ~L~~~~Di~~---~G~~Kaeaaa~~L~~inP~v 437 (606)
.+|.|||.||-||+++..|.+.|+. .+..+|.|.-.... ..+-.++..+.... +|.+. ..++.
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~~~k~~ig~~~t~g~Gag~~~~--~g~~~-------- 70 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPE--VGRKA-------- 70 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcEEEcCCCCCCCCCCCCCHH--HHHHH--------
Confidence 3799999999999999999999986 44566776633322 22222322221100 01111 11110
Q ss_pred EEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEe------CCChHHHHHHHHHHHcCCCeEEEE
Q 007355 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL------TDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 438 ~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~------tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
.....+.+.+.++++|.||.+ |.+-.+.. +.++++.++++++..
T Consensus 71 -----------------------a~~~~~~I~~~l~~~d~v~i~aglGGGTGSG~ap~-ia~~a~e~g~~~~~v 120 (304)
T cd02201 71 -----------------------AEESREEIKEALEGADMVFITAGMGGGTGTGAAPV-IAKIAKEMGALTVAV 120 (304)
T ss_pred -----------------------HHHHHHHHHHHHhCCCEEEEeeccCCCcchhHHHH-HHHHHHHcCCCEEEE
Confidence 111234566777889988876 34444444 678888888866654
No 293
>PRK08278 short chain dehydrogenase; Provisional
Probab=92.34 E-value=1 Score=46.17 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=30.4
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++++|.|+ |++|..+|+.|+..|. ++.++|..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 56789999996 8899999999999996 67887764
No 294
>PRK12746 short chain dehydrogenase; Provisional
Probab=92.29 E-value=0.78 Score=45.92 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=25.9
Q ss_pred hhcCCcEEEEC-CChHHHHHHHHHHHhCCCe
Q 007355 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRK 390 (606)
Q Consensus 361 ~L~~~kVllvG-aGgLGs~vA~~La~~GVg~ 390 (606)
++++++++|.| .|++|+++|+.|+..|...
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v 33 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALV 33 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 46788999999 5799999999999998643
No 295
>PRK06545 prephenate dehydrogenase; Validated
Probab=92.27 E-value=0.81 Score=49.53 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=27.2
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+|.|||+|.+|..+|+.|.+.|. .+.++|.|
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~ 32 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD 32 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 479999999999999999999996 56666653
No 296
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=92.26 E-value=0.65 Score=49.38 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=29.3
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++|+|.|+ |.+|+++++.|+..|. +++.+|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 46789999996 8899999999999995 56776654
No 297
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=92.21 E-value=0.67 Score=41.15 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=55.2
Q ss_pred cEEEECCChHHHHHHHHHHHhC--CCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 007355 366 KCLLLGAGTLGCQVARMLMAWG--VRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~G--Vg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~ 443 (606)
||+|||+|..|...+..+...+ +.-..++|. ...+++.++ +.+ ++. .+
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~----------------------~~~~~~~~~----~~~-~~~--~~- 51 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP----------------------DPERAEAFA----EKY-GIP--VY- 51 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS----------------------SHHHHHHHH----HHT-TSE--EE-
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC----------------------CHHHHHHHH----HHh-ccc--ch-
Confidence 7999999999999999999883 322335444 223444332 222 222 22
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhc--cCCEEEEeCCChHHHHHHHHHHHcCCCeEE
Q 007355 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDTRESRWLPTLLCANTNKITI 503 (606)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I 503 (606)
.+++++++ +.|+|+.++-+ ..+.-+...|.+.|++++
T Consensus 52 ----------------------~~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 52 ----------------------TDLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp ----------------------SSHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEE
T ss_pred ----------------------hHHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEE
Confidence 22445555 68999999987 456667777888888665
No 298
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=92.20 E-value=0.47 Score=49.93 Aligned_cols=115 Identities=17% Similarity=0.137 Sum_probs=64.0
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhh-CCCcEEEEEec
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI-FPAVAAEGVVM 444 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~i-nP~v~v~~~~~ 444 (606)
+|.+||+|..|+.+|++|+..|. +++++|.+.-....+ .+. |..-+....+.+... .+++-+...+.
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~---g~~~~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL--------AEE---GATGADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH--------HHC---CCeecCCHHHHHhhcCCCCEEEEEecC
Confidence 69999999999999999999995 588888763211111 111 222222222223322 24444444431
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh-HHHHHHHHHHHcCCCeEEEE
Q 007355 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR-ESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~-e~R~ll~~~~~~~~~p~I~a 505 (606)
. +. .....+.+...+..-++||+++-.. +.-..+...+...++-++++
T Consensus 70 ~-----~~--------~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~da 118 (301)
T PRK09599 70 G-----EI--------TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDV 118 (301)
T ss_pred C-----cH--------HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeC
Confidence 0 00 0111123334455568899985433 33333557778889988886
No 299
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.20 E-value=1.2 Score=47.21 Aligned_cols=34 Identities=21% Similarity=0.527 Sum_probs=30.7
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+.+|+|.|+|++|..++..+...|++++..+|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 5789999999999999999999999988888765
No 300
>PRK13529 malate dehydrogenase; Provisional
Probab=92.19 E-value=0.82 Score=52.27 Aligned_cols=111 Identities=21% Similarity=0.281 Sum_probs=69.0
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHH----hCC------CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHH
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMA----WGV------RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKS 429 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~----~GV------g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~ 429 (606)
.+|++.||+++|||+.|..||+.|+. .|+ ++|.+||..=+=... | .|+ ...|..-|.+
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--r------~~l---~~~k~~fa~~- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--M------PDL---LDFQKPYARK- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--C------Ccc---hHHHHHHhhh-
Confidence 57889999999999999999999998 599 699999987542221 1 112 2223322221
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccC--CEEEEeCCCh--HHHHHHHHHHHcCCCeEEEE
Q 007355 430 LERIFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSH--DVIFLLTDTR--ESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 430 L~~inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~--DvV~~~tDs~--e~R~ll~~~~~~~~~p~I~a 505 (606)
.++ +. ... .......+.+.++.. |++|.++--. =+..++..|+.....|+|.+
T Consensus 359 ---~~~-~~--~~~-----------------~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 415 (563)
T PRK13529 359 ---REE-LA--DWD-----------------TEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFP 415 (563)
T ss_pred ---ccc-cc--ccc-----------------cccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEE
Confidence 111 00 000 001123566777776 8888877632 24567777877777788754
No 301
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.17 E-value=0.55 Score=47.56 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=29.9
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++++|.|+ ||+|..+|+.|+..|. ++.++|..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 38 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKS 38 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56899999997 6899999999999996 57777764
No 302
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.17 E-value=0.76 Score=48.18 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=30.0
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
-.+++++++|.|+ ||+|..+|+.|+..|. ++.++|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 3577899999997 6899999999999997 5666554
No 303
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.12 E-value=0.3 Score=52.13 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=29.9
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCC-CeEEEEeCCc
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDNGR 398 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GV-g~ItlVD~d~ 398 (606)
||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 7999999 9999999999999887 6799999754
No 304
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.08 E-value=0.72 Score=46.81 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=30.3
Q ss_pred hcCCcEEEECCC-hHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaG-gLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++|+|.|++ ++|..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 678899999986 699999999999997 78887753
No 305
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.06 E-value=0.62 Score=54.43 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=31.4
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
-.+++|+|||+|..|-.+|..|++.|.. ++++|.+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 3578999999999999999999999964 8999864
No 306
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=92.05 E-value=0.38 Score=51.57 Aligned_cols=93 Identities=28% Similarity=0.313 Sum_probs=60.2
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEE
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v 439 (606)
..+.++++.|+|.|.+|..||+.+.+-|. +|...|. .|+ ++.+.. . ..
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~--------~~~-------------~~~~~~------~----~~ 189 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDR--------SPN-------------PEAEKE------L----GA 189 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECC--------CCC-------------hHHHhh------c----Cc
Confidence 47899999999999999999999994442 3333222 111 111110 0 01
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC-CChHHHHHHHHHHHcCCC---eEEEEecC
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT-DTRESRWLPTLLCANTNK---ITITAALG 508 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t-Ds~e~R~ll~~~~~~~~~---p~I~aalG 508 (606)
.+ .+ ++++++++|+|.... .+.++|.++|.--.+.-| .+||.+.|
T Consensus 190 -~y----------------------~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG 238 (324)
T COG1052 190 -RY----------------------VD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARG 238 (324)
T ss_pred -ee----------------------cc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCc
Confidence 11 12 789999999877664 788899999886555444 46676543
No 307
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.04 E-value=0.47 Score=48.30 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=28.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++++|.|+ ||+|..+++.|+..|.. +.+++.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r 37 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDL 37 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEEC
Confidence 56789999998 89999999999999964 666654
No 308
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.99 E-value=0.69 Score=49.83 Aligned_cols=97 Identities=11% Similarity=0.068 Sum_probs=63.1
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
+|+|+|+|.+|...+..+...|..+|.++|.+. .|.+.|++..- ..+.....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~----------------------~Rl~~A~~~~g-----~~~~~~~~- 222 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP----------------------ERLELAKEAGG-----ADVVVNPS- 222 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH----------------------HHHHHHHHhCC-----CeEeecCc-
Confidence 899999999999999999999999999987622 23333333211 11111110
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhc--cCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDLIL--SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~--~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
.........++-. .+|+||+|+.+..+......+++..|..++-+
T Consensus 223 ---------------~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 223 ---------------EDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVG 269 (350)
T ss_pred ---------------cccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEe
Confidence 0011222333333 59999999998877777777777777766654
No 309
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=91.99 E-value=0.9 Score=53.39 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=29.4
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
|++++|+|.|+ |++|..+|+.|+..|. ++.++|.
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46788999997 8999999999999996 7778775
No 310
>PRK08703 short chain dehydrogenase; Provisional
Probab=91.97 E-value=0.74 Score=45.78 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=30.1
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
|++++++|.|+ |++|..+++.|+..|. ++++++.+
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~ 39 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARH 39 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 67789999997 8999999999999996 58887754
No 311
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.95 E-value=0.76 Score=47.94 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=27.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+|.|||+|.+|..+|+.|++.|. +++++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999995 56777764
No 312
>PRK08324 short chain dehydrogenase; Validated
Probab=91.92 E-value=0.76 Score=53.94 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=29.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+.+++|+|.|+ |++|..+|+.|+..|. +++++|.
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r 454 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL 454 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence 45689999995 9999999999999997 7888775
No 313
>PRK08374 homoserine dehydrogenase; Provisional
Probab=91.86 E-value=0.8 Score=49.29 Aligned_cols=33 Identities=30% Similarity=0.598 Sum_probs=25.6
Q ss_pred CcEEEECCChHHHHHHHHHHH--------hCC--CeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMA--------WGV--RKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~--------~GV--g~ItlVD~d 397 (606)
.+|.|+|+|++|+.+++.|.. .|+ +-+.+.|.+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~ 45 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTS 45 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCC
Confidence 589999999999999999987 563 344555643
No 314
>PRK07024 short chain dehydrogenase; Provisional
Probab=91.86 E-value=0.88 Score=45.91 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=28.0
Q ss_pred CCcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.++|+|.| .|++|..+++.|+..|. +++++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36789988 68999999999999997 78887764
No 315
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.86 E-value=0.68 Score=48.90 Aligned_cols=92 Identities=21% Similarity=0.217 Sum_probs=65.0
Q ss_pred hhhhhcCCcEEEECCC-hHHHHHHHHHHHhCCCeEEEEeCCccc---ccCCCcC---cCCCcchhcCCCC-hHHHHHHHH
Q 007355 358 NLDILSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNGRVA---MSNPLRQ---SLYTLDDCLNGGD-FKAMAAVKS 429 (606)
Q Consensus 358 ~q~~L~~~kVllvGaG-gLGs~vA~~La~~GVg~ItlVD~d~Ve---~sNl~RQ---~L~~~~Di~~~G~-~Kaeaaa~~ 429 (606)
.+..+++..|||-|+| |||-++|..+++.|. ++.++|-..-. .-+..|+ .-+=.-|+ .+ ......|++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdi---s~~eei~~~a~~ 107 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDI---SDREEIYRLAKK 107 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecC---CCHHHHHHHHHH
Confidence 4678999999999987 799999999999998 88898864322 1112221 11223455 33 346777888
Q ss_pred HHhhCCCcEEEEEecccCCCCCCCC
Q 007355 430 LERIFPAVAAEGVVMAIPMPGHPVP 454 (606)
Q Consensus 430 L~~inP~v~v~~~~~~Ipmpgh~~~ 454 (606)
+++..-.|.+-.-+.-| ||+|+.-
T Consensus 108 Vk~e~G~V~ILVNNAGI-~~~~~ll 131 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGI-VTGKKLL 131 (300)
T ss_pred HHHhcCCceEEEecccc-ccCCCcc
Confidence 88888888887777777 7777763
No 316
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.85 E-value=0.63 Score=47.78 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=30.5
Q ss_pred hhcCCcEEEECCC---hHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGaG---gLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++.++|.|+| |+|.++|+.|++.|. ++.++|.+
T Consensus 3 ~l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~ 41 (262)
T PRK07984 3 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQN 41 (262)
T ss_pred ccCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecc
Confidence 3678999999996 799999999999996 47777753
No 317
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=91.82 E-value=0.53 Score=50.81 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=61.1
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEE-EEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKIT-LLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~It-lVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
.||+|+|+ |.+|.++++.|...-.-++. +++... .. |+. +.+.+|.+....
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sa---gk~--------~~~~~~~l~~~~- 53 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SA---GKP--------VSEVHPHLRGLV- 53 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hc---CCC--------hHHhCccccccC-
Confidence 37999999 99999999999977444455 545531 11 332 112233221100
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE--ecCCc
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA--ALGFD 510 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a--alG~~ 510 (606)
...+ +..+.+++.++.|+||.|+.+..++.+...+ ...|+.+|+. +..++
T Consensus 54 ~~~~-----------------~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~~fR~~ 105 (346)
T TIGR01850 54 DLNL-----------------EPIDEEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSADFRLK 105 (346)
T ss_pred Ccee-----------------ecCCHHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCChhhhcC
Confidence 0000 1112234446899999999998888877766 4578999975 34544
No 318
>PRK12744 short chain dehydrogenase; Provisional
Probab=91.80 E-value=0.85 Score=45.95 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=27.7
Q ss_pred hhcCCcEEEEC-CChHHHHHHHHHHHhCCCeEEE
Q 007355 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITL 393 (606)
Q Consensus 361 ~L~~~kVllvG-aGgLGs~vA~~La~~GVg~Itl 393 (606)
.+++++|+|.| .|++|.++|+.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 46788999998 5799999999999999875544
No 319
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.79 E-value=0.81 Score=46.29 Aligned_cols=35 Identities=34% Similarity=0.586 Sum_probs=29.9
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++++|.|+ |++|..+++.|+..|. +++++|.+
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~ 38 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN 38 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence 56789999995 9999999999999995 58887753
No 320
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.79 E-value=0.33 Score=51.95 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=29.5
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGV-R-----KITLLDN 396 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GV-g-----~ItlVD~ 396 (606)
-.||.|+|+ |.+|+.+|..|+.-|+ + +|.|+|.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 359999999 9999999999999887 4 6999886
No 321
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=91.76 E-value=1 Score=48.83 Aligned_cols=109 Identities=14% Similarity=0.259 Sum_probs=64.6
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEE--EeCCc--ccccCCCcCcCCCcchhcC---CCChHHHHHHHHHHhhCC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITL--LDNGR--VAMSNPLRQSLYTLDDCLN---GGDFKAMAAVKSLERIFP 435 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~Itl--VD~d~--Ve~sNl~RQ~L~~~~Di~~---~G~~Kaeaaa~~L~~inP 435 (606)
.+.++.|||.||-||.++..|.+.|+....+ +|.|. ++.+...+-.++..+--.. +|.+. ..++.
T Consensus 16 ~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~--~G~~~------ 87 (349)
T TIGR00065 16 NKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPE--IGRKA------ 87 (349)
T ss_pred cCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHH--HHHHH------
Confidence 4568999999999999999999999875544 77776 3333333333333221100 01111 11111
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC------CChHHHHHHHHHHHcCCCeEEEE
Q 007355 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT------DTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 436 ~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t------Ds~e~R~ll~~~~~~~~~p~I~a 505 (606)
.....+.+.+.++++|.||.+. .+-.+. ++.++++.++++.+..
T Consensus 88 -------------------------aee~~d~Ir~~le~~D~vfI~aglGGGTGSG~ap-via~~ake~~~l~vai 137 (349)
T TIGR00065 88 -------------------------AEESRDEIRKLLEGADMVFITAGMGGGTGTGAAP-VVAKIAKELGALTVAV 137 (349)
T ss_pred -------------------------HHHHHHHHHHHHhCCCEEEEEEeccCccchhHHH-HHHHHHHHcCCCEEEE
Confidence 1113345667778899887753 233334 7788888888776654
No 322
>PRK07454 short chain dehydrogenase; Provisional
Probab=91.74 E-value=1.2 Score=44.23 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=27.9
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.++++|.|+ |++|..+++.|+..|. +++++|.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r 38 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR 38 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 468999996 9999999999999997 6888775
No 323
>PRK06270 homoserine dehydrogenase; Provisional
Probab=91.74 E-value=1 Score=48.48 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=20.0
Q ss_pred CcEEEECCChHHHHHHHHHHHh
Q 007355 365 RKCLLLGAGTLGCQVARMLMAW 386 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~ 386 (606)
.||.|+|+|++|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999999865
No 324
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=91.72 E-value=0.24 Score=50.06 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=35.9
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
..|+++||+|.|.|.+|..+|+.|...|.+.+.+.|.+-
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 357899999999999999999999999999999999764
No 325
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.71 E-value=0.78 Score=48.29 Aligned_cols=31 Identities=29% Similarity=0.482 Sum_probs=28.4
Q ss_pred EEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 367 CLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 367 VllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
|.|+|+|.+|+.+|..|+..|..+++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999998886699999986
No 326
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=91.67 E-value=1.1 Score=47.65 Aligned_cols=34 Identities=18% Similarity=0.327 Sum_probs=26.9
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
=++.+|||.|+ |.+|+++++.|+..|. ++++++.
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 35678999995 8899999999999996 4554443
No 327
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=91.66 E-value=0.85 Score=45.87 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=31.2
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.++++++++|.|+ |++|.++|+.|+..|. +++++|.+
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~ 41 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCc
Confidence 3577899999998 7899999999999996 57777753
No 328
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=91.65 E-value=1.2 Score=51.80 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=62.0
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~ 443 (606)
+.+|+|+|+|-.|..+++.|...|+ +++++|.|.- +++.+++ . +.++ +.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~----------------------~v~~~~~----~--g~~v--~~ 448 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD----------------------HIETLRK----F--GMKV--FY 448 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH----------------------HHHHHHh----c--CCeE--EE
Confidence 5799999999999999999999997 5788888541 2333322 1 2332 22
Q ss_pred cccCCCCCCCCCccccccccChhhHHH-hhccCCEEEEeCCChHHHHHHHHHHHcCC
Q 007355 444 MAIPMPGHPVPCQEEDSVLDDCRRLTD-LILSHDVIFLLTDTRESRWLPTLLCANTN 499 (606)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~-li~~~DvV~~~tDs~e~R~ll~~~~~~~~ 499 (606)
.+. .+.+-+++ -++++|+|+.++|+.+.-..+...++++.
T Consensus 449 GDa----------------t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 449 GDA----------------TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred EeC----------------CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 211 23344433 36789999999999998888888887764
No 329
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.64 E-value=0.53 Score=50.48 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=28.7
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGV-R-----KITLLDN 396 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GV-g-----~ItlVD~ 396 (606)
.||.|+|+ |.+|+.+|..|+..|+ + +|.|+|.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 58999999 9999999999999987 4 6898876
No 330
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.59 E-value=1 Score=46.84 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=27.1
Q ss_pred CCcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++|+|.| +|.+|+++++.|+..|. +++.++.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 57899999 59999999999999996 45555543
No 331
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.58 E-value=1.1 Score=46.61 Aligned_cols=31 Identities=23% Similarity=0.455 Sum_probs=26.0
Q ss_pred CcEEEEC-CChHHHHHHHHHHH-hCCCeEEEEe
Q 007355 365 RKCLLLG-AGTLGCQVARMLMA-WGVRKITLLD 395 (606)
Q Consensus 365 ~kVllvG-aGgLGs~vA~~La~-~GVg~ItlVD 395 (606)
.||+|+| +|..|..+++.+.. -++.-.-++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3899999 59999999999986 4677777777
No 332
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.55 E-value=1.3 Score=49.00 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=29.0
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
.||+|+|+|+.|..+|+.|.+.|. .+++.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~ 33 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND 33 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 479999999999999999999996 788888643
No 333
>PTZ00188 adrenodoxin reductase; Provisional
Probab=91.55 E-value=0.88 Score=51.53 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=58.5
Q ss_pred cCCcEEEECCChHHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhh--CCCcEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLM-AWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERI--FPAVAA 439 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La-~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~i--nP~v~v 439 (606)
+.+||+|||+|..|+++|+.|+ ..|+ +++|+|....-. =+.|.-.- . -+++.....+.+.++ .+.++.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~GVa-P------dh~~~k~v~~~f~~~~~~~~v~f 108 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYGVA-P------DHIHVKNTYKTFDPVFLSPNYRF 108 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEeCC-C------CCccHHHHHHHHHHHHhhCCeEE
Confidence 4679999999999999999876 4564 699999876544 23332211 1 123333444444332 355555
Q ss_pred EEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh
Q 007355 440 EGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR 485 (606)
Q Consensus 440 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~ 485 (606)
.+ +..| |.. . .++++.+.||.||.++...
T Consensus 109 ~g-nv~V---G~D----------v---t~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 109 FG-NVHV---GVD----------L---KMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred Ee-eeEe---cCc----------c---CHHHHHhcCCEEEEEcCCC
Confidence 42 2222 111 1 2345556899999999875
No 334
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=91.51 E-value=0.65 Score=56.62 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=57.7
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHH--HHHHHHHHhhCCCcEEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKA--MAAVKSLERIFPAVAAE 440 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Ka--eaaa~~L~~inP~v~v~ 440 (606)
.++||+|||+|..|..+|..|++.|. ++|++|... .+.=+.-|...+. -.+|. +.-.+.+++. +++++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~---rlp~~vi~~~i~~l~~~--Gv~f~ 374 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEF---RLPNQLIDDVVEKIKLL--GGRFV 374 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCC---cChHHHHHHHHHHHHhh--cCeEE
Confidence 48999999999999999999999996 688888642 2333322332222 22332 2223344443 45554
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCCh
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTR 485 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~ 485 (606)
.-. .+ |. .. .++++.+ +||.||.+|...
T Consensus 375 ~n~-~v---G~----------di---t~~~l~~~~yDAV~LAtGA~ 403 (944)
T PRK12779 375 KNF-VV---GK----------TA---TLEDLKAAGFWKIFVGTGAG 403 (944)
T ss_pred EeE-Ee---cc----------EE---eHHHhccccCCEEEEeCCCC
Confidence 321 11 11 11 2344444 699999999985
No 335
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.47 E-value=1 Score=48.04 Aligned_cols=36 Identities=25% Similarity=0.420 Sum_probs=30.8
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++.+||+|.|+ |-+|+++++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567799999996 9999999999999984 67777753
No 336
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=91.43 E-value=0.94 Score=51.96 Aligned_cols=40 Identities=28% Similarity=0.518 Sum_probs=35.7
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHH-----hCC------CeEEEEeCCcc
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMA-----WGV------RKITLLDNGRV 399 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~-----~GV------g~ItlVD~d~V 399 (606)
.+|++.||+++|||+.|..||+.|+. .|+ ++|.++|..=+
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GL 367 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGL 367 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCe
Confidence 57889999999999999999999998 477 79999998754
No 337
>PRK07985 oxidoreductase; Provisional
Probab=91.43 E-value=0.92 Score=47.25 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.9
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEe
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD 395 (606)
++++++++|.|+ ||+|..+|+.|++.|.. +.+++
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~-Vi~~~ 80 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAISY 80 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEec
Confidence 478899999997 89999999999999964 55554
No 338
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.42 E-value=1.1 Score=48.01 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=31.6
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+.||||+|||.+|-.....+-..|..+|.++|-
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~ 202 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL 202 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence 4789999999999999999999999999999875
No 339
>PRK06720 hypothetical protein; Provisional
Probab=91.42 E-value=0.93 Score=43.86 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=30.1
Q ss_pred hcCCcEEEECCC-hHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaG-gLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++.++|.|++ |+|..+|+.|+..| .++.++|.+
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~ 49 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDID 49 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECC
Confidence 678899999986 69999999999999 568887764
No 340
>PRK07060 short chain dehydrogenase; Provisional
Probab=91.41 E-value=1 Score=44.71 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=30.2
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r 41 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR 41 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 67789999998 7999999999999997 5888775
No 341
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=91.36 E-value=0.96 Score=48.39 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=54.2
Q ss_pred CCcEEEECCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~-~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
.+++.|+|+|..|...++.|.. ..+.++.++|. ...|++..++++++. ++++...
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r----------------------~~~~~~~~~~~~~~~--g~~v~~~ 183 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR----------------------TPSTREKFALRASDY--EVPVRAA 183 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhh--CCcEEEe
Confidence 5789999999999998877754 34567777554 455778888888754 2333332
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
++.++.++++|+|+.||-+.+
T Consensus 184 -----------------------~~~~eav~~aDiVitaT~s~~ 204 (325)
T TIGR02371 184 -----------------------TDPREAVEGCDILVTTTPSRK 204 (325)
T ss_pred -----------------------CCHHHHhccCCEEEEecCCCC
Confidence 344567789999999997754
No 342
>PRK07589 ornithine cyclodeaminase; Validated
Probab=91.32 E-value=0.95 Score=49.03 Aligned_cols=76 Identities=22% Similarity=0.316 Sum_probs=56.3
Q ss_pred CCcEEEECCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~-~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
..+++|+|+|.-|-.-++.+.. ..+.+|.++|. ...|+++.++++++ +++++...
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r----------------------~~~~a~~~~~~~~~--~~~~v~~~ 184 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI----------------------DPAATAKLARNLAG--PGLRIVAC 184 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC----------------------CHHHHHHHHHHHHh--cCCcEEEe
Confidence 5789999999999888876653 46778887644 45578888888876 24444432
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
+..++.++++|+|+.||-+.+
T Consensus 185 -----------------------~~~~~av~~ADIIvtaT~S~~ 205 (346)
T PRK07589 185 -----------------------RSVAEAVEGADIITTVTADKT 205 (346)
T ss_pred -----------------------CCHHHHHhcCCEEEEecCCCC
Confidence 346788899999999997654
No 343
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=91.23 E-value=2.2 Score=42.45 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=57.8
Q ss_pred EEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 007355 367 CLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVMA 445 (606)
Q Consensus 367 VllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~~ 445 (606)
|+|+|+ |.+|..|++.|...|..-..++ |. + ....++.|+. .++++... +
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~-----------R~-------------~-~~~~~~~l~~--~g~~vv~~--d 51 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALV-----------RD-------------P-SSDRAQQLQA--LGAEVVEA--D 51 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEE-----------SS-------------S-HHHHHHHHHH--TTTEEEES---
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEE-----------ec-------------c-chhhhhhhhc--ccceEeec--c
Confidence 789997 9999999999999665433331 11 1 1122334444 35555422 2
Q ss_pred cCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC---ChHH--HHHHHHHHHcCCCeEE
Q 007355 446 IPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD---TRES--RWLPTLLCANTNKITI 503 (606)
Q Consensus 446 Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD---s~e~--R~ll~~~~~~~~~p~I 503 (606)
..+.+.+.+.++++|.||.++. ..+. ..-+-++|.+.|+..+
T Consensus 52 ----------------~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 52 ----------------YDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp ----------------TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred ----------------cCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence 2467889999999999999998 3333 2345556777776554
No 344
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=91.21 E-value=1.8 Score=37.70 Aligned_cols=91 Identities=15% Similarity=0.263 Sum_probs=58.5
Q ss_pred cCCcEEEECCChHHHHHHH-HHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 363 SSRKCLLLGAGTLGCQVAR-MLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~-~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
+..+|+|+|+|++|..++. .....|.+-..++|.|. +++ |+. +.+
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~---G~~-----------------i~g 47 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKI---GKE-----------------IGG 47 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTT---TSE-----------------ETT
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------Ccc---CcE-----------------ECC
Confidence 4578999999999998874 44567888888888743 223 321 111
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCC-eEEEEe
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNK-ITITAA 506 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~-p~I~aa 506 (606)
++ + ....+.+.+.+ +.|+.+.+.-...++....+++. .++ .+++.+
T Consensus 48 ip---------V--------~~~~~~l~~~~-~i~iaii~VP~~~a~~~~~~~~~-~gIk~i~nft 94 (96)
T PF02629_consen 48 IP---------V--------YGSMDELEEFI-EIDIAIITVPAEAAQEVADELVE-AGIKGIVNFT 94 (96)
T ss_dssp EE---------E--------ESSHHHHHHHC-TTSEEEEES-HHHHHHHHHHHHH-TT-SEEEEES
T ss_pred EE---------e--------eccHHHhhhhh-CCCEEEEEcCHHHHHHHHHHHHH-cCCCEEEEeC
Confidence 11 1 12456666666 59999999977777777777766 554 444443
No 345
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.19 E-value=2.2 Score=46.14 Aligned_cols=93 Identities=15% Similarity=0.095 Sum_probs=58.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~ 443 (606)
+.+|+|+|+||||....+....+| -+++.+|. +..|.+.|.+.-... -+..
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~----------------------~~~K~e~a~~lGAd~----~i~~-- 217 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITR----------------------SEEKLELAKKLGADH----VINS-- 217 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeC----------------------ChHHHHHHHHhCCcE----EEEc--
Confidence 789999999999999999999999 77777664 555666554432222 1111
Q ss_pred cccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
. +.+..+.+-+.+|+|+++.- ..+-...-.+.+..|..++-+
T Consensus 218 ------------------~-~~~~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 218 ------------------S-DSDALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred ------------------C-CchhhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEEC
Confidence 1 22233333333999999988 444444444555666655433
No 346
>PRK08655 prephenate dehydrogenase; Provisional
Probab=91.18 E-value=1.3 Score=49.48 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=26.4
Q ss_pred cEEEEC-CChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 366 kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+|+|+| +|.+|..+|+.|...|. +++++|.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r 32 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGR 32 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 699997 89999999999999995 6787775
No 347
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=91.18 E-value=0.75 Score=46.52 Aligned_cols=35 Identities=20% Similarity=0.470 Sum_probs=30.3
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++|+|.|+ ||+|.++|+.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 67889999997 6899999999999996 57788765
No 348
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=91.18 E-value=0.23 Score=54.52 Aligned_cols=41 Identities=32% Similarity=0.515 Sum_probs=37.9
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCC--eEEEEeCCccc
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRVA 400 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg--~ItlVD~d~Ve 400 (606)
++|+..||++.|+|+.|+.+++.|...|++ +|.++|.--+-
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l 237 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLL 237 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcc
Confidence 689999999999999999999999999998 99999986553
No 349
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.15 E-value=2.6 Score=44.65 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=26.1
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+|+|.|+ |-+|+++++.|+..|=-+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 47999998 999999999999864246777764
No 350
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=91.15 E-value=1 Score=45.94 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=23.8
Q ss_pred cEEEECCChHHHHHHHHHHHh--CCCeEEEEeCC
Q 007355 366 KCLLLGAGTLGCQVARMLMAW--GVRKITLLDNG 397 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~--GVg~ItlVD~d 397 (606)
+|.|||||++|..+++.+-.- ++..+.+.|.+
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~ 35 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRD 35 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCC
Confidence 799999999999999876532 35556665653
No 351
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.14 E-value=1.1 Score=45.10 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=28.1
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEe
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD 395 (606)
++++++|+|.|+ |++|..+++.|+..|.. +.++|
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 467899999985 68999999999999964 55554
No 352
>PRK12862 malic enzyme; Reviewed
Probab=91.12 E-value=0.71 Score=54.93 Aligned_cols=40 Identities=25% Similarity=0.312 Sum_probs=36.6
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCC--eEEEEeCCcc
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGRV 399 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg--~ItlVD~d~V 399 (606)
.+|++.||++.|+|+.|..+|+.|...|+. +|.++|..=+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 230 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 230 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 578899999999999999999999999995 9999997654
No 353
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.11 E-value=0.57 Score=47.64 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=30.7
Q ss_pred hhcCCcEEEECC---ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvGa---GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++++++|.|+ +|+|.++|+.|++.|. ++.++|.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~ 42 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFG 42 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCc
Confidence 367889999997 7999999999999996 57777754
No 354
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=91.10 E-value=1.4 Score=44.07 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=26.1
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++|.|+ |++|..+++.|+..|. ++++++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 32 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADL 32 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46899995 8999999999999997 5777664
No 355
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=91.08 E-value=0.26 Score=56.20 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.1
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|+|+||+|..++..|+..|+ +|++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567899999999999999999999999 8999764
No 356
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=91.05 E-value=1 Score=44.97 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=31.9
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+.+++++|+|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~ 46 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTE 46 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCH
Confidence 5678999999986 5699999999999997 777888753
No 357
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=91.03 E-value=1.1 Score=47.31 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=29.2
Q ss_pred cCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 363 ~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++++|.|+ +|+|.++|+.|++.|.-++.+++.+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678999998 5899999999999996678777653
No 358
>PRK09291 short chain dehydrogenase; Provisional
Probab=91.01 E-value=1.8 Score=43.32 Aligned_cols=31 Identities=29% Similarity=0.279 Sum_probs=25.0
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEe
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD 395 (606)
+++|+|.|+ |++|..+++.|+..|.. +++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 467999997 79999999999999964 44433
No 359
>PRK07201 short chain dehydrogenase; Provisional
Probab=90.97 E-value=1.2 Score=51.47 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=30.9
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
..+++++++|.|+ ||+|.++++.|++.|. ++.+++.
T Consensus 367 ~~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r 403 (657)
T PRK07201 367 GPLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVAR 403 (657)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 3677899999997 8899999999999996 6777664
No 360
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=90.94 E-value=0.69 Score=49.60 Aligned_cols=106 Identities=20% Similarity=0.313 Sum_probs=67.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~ 444 (606)
.+|.|+|+|+=|+.+|..|++.| ..+++...|. ++ .+.|.+-. .+.+..+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~---------------~~-----------~~~i~~~~--~N~~yLp- 51 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDE---------------EI-----------VAEINETR--ENPKYLP- 51 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCH---------------HH-----------HHHHHhcC--cCccccC-
Confidence 58999999999999999999999 5555533321 11 11122210 1111111
Q ss_pred ccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHH--HcCCCeEEEEecCCc
Q 007355 445 AIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC--ANTNKITITAALGFD 510 (606)
Q Consensus 445 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~--~~~~~p~I~aalG~~ 510 (606)
.|.-| ..-....++.+.++++|+|+.++-+...|..+..+. ...+.++++++-|+.
T Consensus 52 ~i~lp----------~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie 109 (329)
T COG0240 52 GILLP----------PNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLE 109 (329)
T ss_pred CccCC----------cccccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 11111 012245677888899999999999999888888763 355668888876664
No 361
>PLN02650 dihydroflavonol-4-reductase
Probab=90.93 E-value=1.4 Score=46.74 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=26.9
Q ss_pred cCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++|||.|+ |.+|+++++.|+..|. ++++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r 37 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVR 37 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEc
Confidence 3568999996 9999999999999986 4555554
No 362
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=90.92 E-value=0.63 Score=48.53 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=27.3
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
||.|||+|.+|+.+|+.|++.|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999995 67787764
No 363
>PRK12367 short chain dehydrogenase; Provisional
Probab=90.89 E-value=0.39 Score=48.98 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=35.4
Q ss_pred chhhhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 357 LNLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 357 ~~q~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+.|.++++++++|.|+ ||+|.++|+.|+..|. ++.++|.+.
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 5789999999999998 7899999999999996 677777643
No 364
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.84 E-value=1 Score=47.38 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=62.7
Q ss_pred chhhhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCC
Q 007355 357 LNLDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFP 435 (606)
Q Consensus 357 ~~q~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP 435 (606)
+..+++.++.|+|-|| .|+|-++|+.|++.|.+-+.++= -..+-+.+++.+++..|
T Consensus 5 ~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar-----------------------~~rrl~~v~~~l~~~~~ 61 (282)
T KOG1205|consen 5 LFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR-----------------------RARRLERVAEELRKLGS 61 (282)
T ss_pred ccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh-----------------------hhhhHHHHHHHHHHhCC
Confidence 3467899999999998 58999999999999977655521 12345566666776665
Q ss_pred CcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEe
Q 007355 436 AVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLL 481 (606)
Q Consensus 436 ~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~ 481 (606)
.-++...+.++ ++.++...-.+.+...+.+.|+.|+-
T Consensus 62 ~~~v~~~~~Dv---------s~~~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 62 LEKVLVLQLDV---------SDEESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred cCccEEEeCcc---------CCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 54677776665 22333333334445566778887764
No 365
>PRK06114 short chain dehydrogenase; Provisional
Probab=90.82 E-value=1.6 Score=43.99 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=29.2
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++++|.|+ ||+|.++|+.|+..|. ++.++|.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999985 5999999999999997 6666665
No 366
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.82 E-value=2 Score=43.62 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=26.7
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.++|+|.|+ ||+|.++|+.|+..|--++++++.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 457888886 789999999999987457777665
No 367
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.82 E-value=1 Score=50.44 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=30.6
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++|+|||+|..|...|..|++.|.. ++++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 578999999999999999999999975 8888765
No 368
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=90.79 E-value=1.6 Score=43.79 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.7
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+|+|.|+ |++|..+|+.|+..|. +++++|.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 32 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGR 32 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 6899996 8899999999999996 5777665
No 369
>PRK08226 short chain dehydrogenase; Provisional
Probab=90.78 E-value=1.3 Score=44.65 Aligned_cols=36 Identities=28% Similarity=0.487 Sum_probs=30.3
Q ss_pred hhcCCcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 361 ILSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 361 ~L~~~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++++++|.| .|++|..+++.|+..|.. +++++.+
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r~ 39 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDIS 39 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecCC
Confidence 46789999998 678999999999999974 7787654
No 370
>PRK07791 short chain dehydrogenase; Provisional
Probab=90.76 E-value=1.2 Score=46.18 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=29.3
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++++|.|+ ||+|..+|+.|+..|. ++.++|.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~ 38 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDI 38 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeC
Confidence 467889999997 6899999999999996 5666665
No 371
>PRK07677 short chain dehydrogenase; Provisional
Probab=90.75 E-value=1.1 Score=44.88 Aligned_cols=33 Identities=12% Similarity=0.322 Sum_probs=27.9
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 467899988 5699999999999998 78887764
No 372
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=90.72 E-value=1.1 Score=45.51 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=27.8
Q ss_pred hcCCcEEEECC---ChHHHHHHHHHHHhCCCeEEEEe
Q 007355 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 362 L~~~kVllvGa---GgLGs~vA~~La~~GVg~ItlVD 395 (606)
++++.|+|.|+ +|+|.++|+.|++.|.. +.+++
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~-v~~~~ 39 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAE-LGITY 39 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCE-EEEEe
Confidence 57889999998 49999999999999974 55554
No 373
>PRK06523 short chain dehydrogenase; Provisional
Probab=90.61 E-value=0.79 Score=46.12 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=51.0
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCC-hHHHHHHHHHHhhCCCcE
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKAMAAVKSLERIFPAVA 438 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~-~Kaeaaa~~L~~inP~v~ 438 (606)
++++++|+|.|+ |++|..+++.|+..|. ++.+++.+.-+ +......+-.-|+ .. ..++.+.+.+.+.++.++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~---~~~~~~~~~~~~~~~~~~~id 79 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADL---TTAEGCAAVARAVLERLGGVD 79 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCC---CCHHHHHHHHHHHHHHcCCCC
Confidence 477899999996 7999999999999997 58888876432 2222222334466 33 234555566666666566
Q ss_pred EEEEe
Q 007355 439 AEGVV 443 (606)
Q Consensus 439 v~~~~ 443 (606)
+-.+.
T Consensus 80 ~vi~~ 84 (260)
T PRK06523 80 ILVHV 84 (260)
T ss_pred EEEEC
Confidence 55444
No 374
>PRK08628 short chain dehydrogenase; Provisional
Probab=90.60 E-value=0.99 Score=45.34 Aligned_cols=35 Identities=14% Similarity=0.272 Sum_probs=28.6
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.|++++++|.|+ |++|..+|+.|+..|.. +++++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r 39 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGR 39 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcC
Confidence 377899999995 68999999999999975 455443
No 375
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.59 E-value=1.2 Score=51.88 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=31.5
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
.+++|+|||+|..|-..|..|++.|. +++++|...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 58999999999999999999999997 589988654
No 376
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.53 E-value=1 Score=45.50 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=26.2
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+|+|.|+ ||+|..+|+.|+..|. ++.++|.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~ 33 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRN 33 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCC
Confidence 6889886 7899999999999997 57777653
No 377
>PRK08862 short chain dehydrogenase; Provisional
Probab=90.53 E-value=1 Score=45.16 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=28.9
Q ss_pred hcCCcEEEECCC-hHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaG-gLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++++|.|++ |+|..+|+.|+..|.. +.+++.+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~r~ 38 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCDQD 38 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEcCC
Confidence 578899999975 5999999999999974 7776653
No 378
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=90.53 E-value=0.43 Score=51.78 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=36.0
Q ss_pred cCCcEEEECCChHHHHHHHHHHHh-CCCeEEEEeCCcccccCCCc
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAW-GVRKITLLDNGRVAMSNPLR 406 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~-GVg~ItlVD~d~Ve~sNl~R 406 (606)
+...|+|||+|-+|+.+|..|++. |..+++++|.+.+-...-.|
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~ 73 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGR 73 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCccccc
Confidence 456899999999999999999985 88789999998765433333
No 379
>PRK12827 short chain dehydrogenase; Provisional
Probab=90.47 E-value=1.3 Score=43.95 Aligned_cols=34 Identities=41% Similarity=0.582 Sum_probs=28.4
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++++|.|+ |++|..+|+.|+..|.. +++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLDI 38 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEcC
Confidence 56789999995 89999999999999974 666663
No 380
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.46 E-value=1.1 Score=49.52 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=30.8
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++|+|+|+|++|..+|+.|++.|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999996 68887754
No 381
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.43 E-value=1.1 Score=51.51 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=31.8
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
-.+++|+|||+|..|-.+|..|.+.|. +++++|...
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 457899999999999999999999998 599999643
No 382
>PRK13018 cell division protein FtsZ; Provisional
Probab=90.43 E-value=2.1 Score=47.02 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=33.1
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCC--eEEEEeCCc
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR 398 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg--~ItlVD~d~ 398 (606)
+.....+|.|||+||-||+++..|...|+. .+..++.|.
T Consensus 24 ~~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 24 DDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 456678999999999999999999999986 556777776
No 383
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.33 E-value=1.3 Score=48.52 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=28.0
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
-+..+|+|+|+ |.+|..+++.|+..|. +++.++.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 44568999997 9999999999999995 5666654
No 384
>PRK07775 short chain dehydrogenase; Provisional
Probab=90.31 E-value=2.3 Score=43.54 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=28.0
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
...+.|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r 42 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGF-PVALGAR 42 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 55678999995 9999999999999997 5666554
No 385
>PRK05650 short chain dehydrogenase; Provisional
Probab=90.30 E-value=1.8 Score=43.93 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=25.3
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-~V~~~~r 32 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-RLALADV 32 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 36889886 8999999999999997 4666554
No 386
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.29 E-value=0.95 Score=51.45 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=30.8
Q ss_pred hhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+...||+|+|+|.+|...+..+.++|.. ++++|.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~-V~v~d~ 195 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAI-VRAFDT 195 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 56679999999999999999999999975 777665
No 387
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.27 E-value=1.9 Score=47.43 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=32.5
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLR 406 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~R 406 (606)
||.|||+|-+|..+|..|+..|. +++.+|.+.-....+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhc
Confidence 69999999999999999999996 68889986544444443
No 388
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.24 E-value=2.3 Score=45.31 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.0
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+.+|+|.|+|++|..++..+...|+.+++.+|.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3679999999999999999999999988887765
No 389
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=90.24 E-value=2 Score=44.93 Aligned_cols=93 Identities=22% Similarity=0.313 Sum_probs=63.9
Q ss_pred CcEEEECCChHHHHHHHHHHHhCC---CeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGV---RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GV---g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
.|+.+||+|..|..++.-|.+.|. .+|.+.|++ ..|.. .+.+.++.. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~----------------------~e~~~----~l~~~~g~~-~-- 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS----------------------EEKRA----ALAAEYGVV-T-- 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCC----------------------HHHHH----HHHHHcCCc-c--
Confidence 479999999999999999999994 566664431 11221 455555443 1
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHH-HcCCCeEEEEecCC
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLC-ANTNKITITAALGF 509 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~-~~~~~p~I~aalG~ 509 (606)
..+..+.+.+.|+||+|.=.....-.+..+- ...++.+|+.+-|.
T Consensus 53 -----------------------~~~~~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvISiaAGv 98 (266)
T COG0345 53 -----------------------TTDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVISIAAGV 98 (266)
T ss_pred -----------------------cCcHHHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEEEeCCC
Confidence 1233466788999999998876666666665 35678888865443
No 390
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=90.18 E-value=2 Score=42.80 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=25.9
Q ss_pred hcCCcEEEEC-CChHHHHHHHHHHHhCCCeE
Q 007355 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKI 391 (606)
Q Consensus 362 L~~~kVllvG-aGgLGs~vA~~La~~GVg~I 391 (606)
+++++|+|.| .|++|..+|+.|+..|...+
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~ 34 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVV 34 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence 5678999999 78999999999999996543
No 391
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.16 E-value=2.2 Score=42.02 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=26.9
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITL 393 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~Itl 393 (606)
+++++|+|.|+ |++|..+++.|+..|..-+.+
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 56789999996 899999999999999764444
No 392
>PLN02214 cinnamoyl-CoA reductase
Probab=90.06 E-value=1.5 Score=46.66 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=28.4
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++|+|.|+ |.+|+++++.|+..|. +++.++.
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 42 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVR 42 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence 356789999998 9999999999999995 4555443
No 393
>PRK12742 oxidoreductase; Provisional
Probab=90.04 E-value=1.5 Score=43.33 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=27.7
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEE
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLL 394 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlV 394 (606)
.+++++|+|.|+ |++|.++|+.|+..|.. +.++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~ 36 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFT 36 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEe
Confidence 367889999997 89999999999999974 5453
No 394
>PRK06823 ornithine cyclodeaminase; Validated
Probab=89.94 E-value=1.4 Score=46.98 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=56.0
Q ss_pred CCcEEEECCChHHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLMA-WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~-~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
.++++|+|+|..|-.-++.+.. ..+++|.++|. ...|+++.++.+++. ++.+..
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r----------------------~~~~a~~~~~~~~~~--~~~v~~- 182 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR----------------------SETALEEYRQYAQAL--GFAVNT- 182 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC----------------------CHHHHHHHHHHHHhc--CCcEEE-
Confidence 6799999999999999988774 35677777544 455788888877754 233332
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChH
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRE 486 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e 486 (606)
.+..++.+.++|+|+.||-+.+
T Consensus 183 ----------------------~~~~~~av~~ADIV~taT~s~~ 204 (315)
T PRK06823 183 ----------------------TLDAAEVAHAANLIVTTTPSRE 204 (315)
T ss_pred ----------------------ECCHHHHhcCCCEEEEecCCCC
Confidence 2345778899999999998765
No 395
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.87 E-value=1.3 Score=46.76 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=29.2
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++|||.|+ |.+|+++++.|+..|. +++++|..
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~ 39 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRR 39 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecc
Confidence 56789999997 8899999999999996 56666653
No 396
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.80 E-value=0.13 Score=60.64 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=29.7
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
++|.|||+|+.|+.+|..++..|. .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999995 889999753
No 397
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=89.75 E-value=1.6 Score=44.00 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=27.5
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEe
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD 395 (606)
.+++++++|.|+ |++|.++|+.|+..|.. +.++.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~~ 38 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVINY 38 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEe
Confidence 377899999985 67999999999999964 44443
No 398
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.74 E-value=1.8 Score=43.13 Aligned_cols=30 Identities=30% Similarity=0.518 Sum_probs=25.6
Q ss_pred hcCCcEEEEC-CChHHHHHHHHHHHhCCCeE
Q 007355 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKI 391 (606)
Q Consensus 362 L~~~kVllvG-aGgLGs~vA~~La~~GVg~I 391 (606)
|++++++|.| .|++|.++|+.|+..|..-+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv 33 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVV 33 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEE
Confidence 5678999999 57999999999999997543
No 399
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=89.72 E-value=1.9 Score=45.13 Aligned_cols=29 Identities=14% Similarity=0.400 Sum_probs=24.8
Q ss_pred cCCcEEEEC-CChHHHHHHHHHHHhCCCeEE
Q 007355 363 SSRKCLLLG-AGTLGCQVARMLMAWGVRKIT 392 (606)
Q Consensus 363 ~~~kVllvG-aGgLGs~vA~~La~~GVg~It 392 (606)
.+++|+|.| .|.+|+++++.|+..|.. ++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~-V~ 33 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYT-VK 33 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EE
Confidence 467999999 499999999999999964 44
No 400
>PRK09135 pteridine reductase; Provisional
Probab=89.69 E-value=1.9 Score=42.61 Aligned_cols=33 Identities=27% Similarity=0.488 Sum_probs=27.1
Q ss_pred cCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r 38 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYH 38 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence 4578999997 8999999999999996 4555554
No 401
>PRK06223 malate dehydrogenase; Reviewed
Probab=89.69 E-value=0.46 Score=50.00 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=29.9
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.||.|+|+|.+|+.+|..|+..|.+++.++|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999997
No 402
>PRK05884 short chain dehydrogenase; Provisional
Probab=89.67 E-value=1.4 Score=43.83 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=26.6
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
|++|.|+ |++|..+++.|+..|. +++++|.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~ 33 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGAR 33 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 6899987 8999999999999996 67777654
No 403
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.65 E-value=1.4 Score=45.24 Aligned_cols=34 Identities=18% Similarity=0.457 Sum_probs=29.5
Q ss_pred hcCCcEEEECCC---hHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGaG---gLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++.++|.|++ |+|.++|+.|++.|. ++.++|.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecC
Confidence 678899999998 899999999999996 5677665
No 404
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.64 E-value=1.6 Score=44.39 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=31.3
Q ss_pred hhhcCCcEEEECCC---hHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 360 DILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 360 ~~L~~~kVllvGaG---gLGs~vA~~La~~GVg~ItlVD~d 397 (606)
..++++.++|.|++ |+|.++|+.|+..|. ++.++|.+
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~ 45 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLN 45 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 34778999999985 899999999999996 57777764
No 405
>PRK05442 malate dehydrogenase; Provisional
Probab=89.59 E-value=0.77 Score=49.28 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGV-R-----KITLLDN 396 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GV-g-----~ItlVD~ 396 (606)
-.||.|+|+ |.+|+.+|..|+..|+ + .|.|+|.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 359999998 9999999999998887 4 6999886
No 406
>CHL00194 ycf39 Ycf39; Provisional
Probab=89.54 E-value=3.2 Score=43.61 Aligned_cols=30 Identities=37% Similarity=0.557 Sum_probs=25.5
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
||+|.|+ |-+|+++++.|...|. +++.++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEc
Confidence 7999996 9999999999999995 5666554
No 407
>PRK09330 cell division protein FtsZ; Validated
Probab=89.53 E-value=2.4 Score=46.56 Aligned_cols=112 Identities=10% Similarity=0.145 Sum_probs=68.5
Q ss_pred hhhcCCcEEEECCChHHHHHHHHHHHhCCC--eEEEEeCCc--ccccCCCcCcCCCcchhcC---CCChHHHHHHHHHHh
Q 007355 360 DILSSRKCLLLGAGTLGCQVARMLMAWGVR--KITLLDNGR--VAMSNPLRQSLYTLDDCLN---GGDFKAMAAVKSLER 432 (606)
Q Consensus 360 ~~L~~~kVllvGaGgLGs~vA~~La~~GVg--~ItlVD~d~--Ve~sNl~RQ~L~~~~Di~~---~G~~Kaeaaa~~L~~ 432 (606)
..-...+|-|||+||-||+++..|.+.|+. .+..++-|. ++.++..+-.+...+--.. +|.|. ..++..
T Consensus 9 ~~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe--~G~~aa-- 84 (384)
T PRK09330 9 EENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPE--VGRKAA-- 84 (384)
T ss_pred ccccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHH--HHHHHH--
Confidence 344567899999999999999999999986 445555555 3333333333332211100 11121 111111
Q ss_pred hCCCcEEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCC------ChHHHHHHHHHHHcCCCeEEEE
Q 007355 433 IFPAVAAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTD------TRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 433 inP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tD------s~e~R~ll~~~~~~~~~p~I~a 505 (606)
..+.+.+.+.++++|+||.+.. +-.+- ++.++++.++++.+..
T Consensus 85 -----------------------------ee~~e~I~~~l~~~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaV 133 (384)
T PRK09330 85 -----------------------------EESREEIREALEGADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAV 133 (384)
T ss_pred -----------------------------HHHHHHHHHHHcCCCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEE
Confidence 1234566777899999988643 33444 7889999999877754
No 408
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.51 E-value=1.5 Score=44.69 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=28.9
Q ss_pred hhhcCCcEEEECC---ChHHHHHHHHHHHhCCCeEEEEe
Q 007355 360 DILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLD 395 (606)
Q Consensus 360 ~~L~~~kVllvGa---GgLGs~vA~~La~~GVg~ItlVD 395 (606)
++++++.++|.|+ +|+|.++|+.|++.|. ++.+.+
T Consensus 2 ~~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~ 39 (261)
T PRK08690 2 GFLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTY 39 (261)
T ss_pred CccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEc
Confidence 3578899999994 5899999999999997 455554
No 409
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=89.50 E-value=2.5 Score=42.03 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=27.8
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++|+|.|+ |++|..+++.|+..|. +++++|.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLG 34 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 57999995 8999999999999997 78887764
No 410
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=89.50 E-value=0.47 Score=49.55 Aligned_cols=33 Identities=21% Similarity=0.453 Sum_probs=29.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
++|.|||+|..|+.+|..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999997 799998754
No 411
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=89.48 E-value=1.5 Score=46.58 Aligned_cols=32 Identities=25% Similarity=0.518 Sum_probs=27.6
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++|+|.|+ |.+|+++++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 47999997 789999999999999877777764
No 412
>PRK12743 oxidoreductase; Provisional
Probab=89.47 E-value=1.6 Score=44.07 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.5
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeE
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKI 391 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~I 391 (606)
.++|+|.|+ |++|..+|+.|+..|..-+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~ 30 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIG 30 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence 468999987 6899999999999997443
No 413
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=89.34 E-value=1.2 Score=45.74 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=25.7
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCC-CeEEEEeC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGV-RKITLLDN 396 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GV-g~ItlVD~ 396 (606)
+|+|.|+ |.+|.++++.|+..|- -+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 5899997 9999999999999873 46777664
No 414
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.31 E-value=0.4 Score=50.46 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=32.3
Q ss_pred hhcCCcEEEECCCh-HHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGAGT-LGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGaGg-LGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++|+|+|+|+ +|..+|..|...|. ++|+++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 57899999999999 99999999999998 9999864
No 415
>PRK05599 hypothetical protein; Provisional
Probab=89.30 E-value=1.7 Score=43.71 Aligned_cols=29 Identities=24% Similarity=0.508 Sum_probs=23.3
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.|+|.|+ +|+|-.+|+.|+. | .++.+++.
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g-~~Vil~~r 31 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-G-EDVVLAAR 31 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-C-CEEEEEeC
Confidence 4788877 6799999999995 7 67777665
No 416
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.29 E-value=2.3 Score=47.37 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.4
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
-.+++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 457899999999999999999999996 69999974
No 417
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=89.23 E-value=0.49 Score=50.46 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=31.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~V 399 (606)
...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999995 7999998764
No 418
>PLN00198 anthocyanidin reductase; Provisional
Probab=89.19 E-value=2.2 Score=44.95 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=28.3
Q ss_pred hcCCcEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+++++|+|.| +|.+|+++++.|+..|. ++++++.+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4578899999 77899999999999996 56655543
No 419
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.19 E-value=0.17 Score=59.77 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
++|.|||+|+.|+.+|..++..|+ .++++|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999995 788888754
No 420
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=89.14 E-value=0.59 Score=48.57 Aligned_cols=35 Identities=31% Similarity=0.539 Sum_probs=31.6
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAM 401 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~ 401 (606)
.|+|||+|-.|+.+|..|++.|. +++|+|.+.+.-
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999997 999999995543
No 421
>PRK06701 short chain dehydrogenase; Provisional
Probab=89.12 E-value=1.6 Score=45.41 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.4
Q ss_pred hhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.++++++++|.|+ |++|..+|+.|++.|. ++++++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r 78 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYL 78 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5778899999996 8899999999999996 4667654
No 422
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=89.07 E-value=2.3 Score=42.09 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.6
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCe
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRK 390 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ 390 (606)
++|+|.|+ |++|..+++.|+..|...
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v 28 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTV 28 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 46899998 789999999999999753
No 423
>PRK08264 short chain dehydrogenase; Validated
Probab=89.07 E-value=0.56 Score=46.45 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=32.7
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+++++|+|.|+ |++|..+|+.|++.|..++.+++.+.
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence 56789999995 99999999999999997899988753
No 424
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=89.00 E-value=1.7 Score=43.33 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=22.9
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeE
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKI 391 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~I 391 (606)
++|+|.|+ |++|..+|+.|++.|...+
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~ 30 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVG 30 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEE
Confidence 57999997 6799999999999997543
No 425
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.92 E-value=0.5 Score=53.06 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=33.7
Q ss_pred hhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 359 LDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 359 q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+.-+.++||+|+|+|+.|..+|+.|.+.|. .+++.|.+
T Consensus 10 ~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 10 LPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred cccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 345667899999999999999999999998 89999964
No 426
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.90 E-value=1.7 Score=43.15 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=25.5
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKIT 392 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~It 392 (606)
+++++|+|.|+ |++|+.+++.|+..|..-+.
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~ 35 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVV 35 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 56789999996 55999999999999985433
No 427
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=88.89 E-value=5.4 Score=40.29 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=27.6
Q ss_pred hhhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEE
Q 007355 359 LDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITL 393 (606)
Q Consensus 359 q~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~Itl 393 (606)
.+....++|+|+|+ |++|..+++.|+..|.. ++.
T Consensus 12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~ 46 (251)
T PLN00141 12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA 46 (251)
T ss_pred cccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence 35566789999996 99999999999998854 443
No 428
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.89 E-value=0.53 Score=51.15 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=30.5
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
.+|+|||+|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 489999999999999999999995 799999886
No 429
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=88.87 E-value=1.3 Score=48.67 Aligned_cols=96 Identities=19% Similarity=0.331 Sum_probs=59.7
Q ss_pred cCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 363 ~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
...||+|+|+ |.+|.++.+.|..-..-+|+++-.+. .. |+. +...+|.+....
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~---------------sa---G~~--------i~~~~~~l~~~~ 90 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADR---------------KA---GQS--------FGSVFPHLITQD 90 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChh---------------hc---CCC--------chhhCccccCcc
Confidence 3459999999 78999999999988667787754421 11 321 112223221100
Q ss_pred EecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
. .++ .+.+. .+ ++++|+||.|+.+..++.+...+ ..++.+|+.
T Consensus 91 ~-~~~----------------~~~~~-~~-~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDl 133 (381)
T PLN02968 91 L-PNL----------------VAVKD-AD-FSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDL 133 (381)
T ss_pred c-cce----------------ecCCH-HH-hcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEc
Confidence 0 000 01111 12 47899999999998888887776 367889975
No 430
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=88.87 E-value=0.62 Score=49.75 Aligned_cols=43 Identities=23% Similarity=0.413 Sum_probs=37.0
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCc
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLR 406 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~R 406 (606)
...+|+|||+|-+|+.+|..|++.|. +++++|.+.+...+-.|
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~ 45 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGR 45 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhc
Confidence 46789999999999999999999998 99999999886544433
No 431
>PRK07069 short chain dehydrogenase; Validated
Probab=88.86 E-value=2.4 Score=42.13 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=25.4
Q ss_pred cEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 366 kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+|+|.| .|++|..+++.|++.|. ++.++|.+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~ 32 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-KVFLTDIN 32 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 478887 58899999999999996 67777643
No 432
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=88.83 E-value=2 Score=42.42 Aligned_cols=34 Identities=44% Similarity=0.655 Sum_probs=28.0
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++++|.|+ |++|.++++.|+..|. .+++.+.
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~ 38 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGT 38 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence 56789999995 8899999999999996 5655543
No 433
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=88.80 E-value=1.6 Score=45.11 Aligned_cols=31 Identities=35% Similarity=0.591 Sum_probs=27.0
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+|+|.|+ |.+|..+++.|+..|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 6999996 9999999999999995 78887764
No 434
>PRK06182 short chain dehydrogenase; Validated
Probab=88.72 E-value=1.8 Score=43.98 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=27.3
Q ss_pred cCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++++|.|+ |++|.++|+.|+..|. ++.+++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r 35 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAAR 35 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999997 8999999999999986 5565554
No 435
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=88.72 E-value=3 Score=46.97 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=65.4
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCC--ChHHHHHHHHHHhh-CCCcEEEEE
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGG--DFKAMAAVKSLERI-FPAVAAEGV 442 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G--~~Kaeaaa~~L~~i-nP~v~v~~~ 442 (606)
.|.+||+|..|..+|++|++.|. ++++.|.+.-....+.... .. | -.-+...++..+.+ .|.+-+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-----~~---g~~~~~~~s~~e~v~~l~~~dvIil~v 71 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-----AK---GKKIVGAYSIEEFVQSLERPRKIMLMV 71 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-----cC---CCCceecCCHHHHHhhcCCCCEEEEEC
Confidence 47899999999999999999996 6888887543222221110 00 1 00111122222222 244444433
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCC--hHHHHHHHHHHHcCCCeEEEEe
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDT--RESRWLPTLLCANTNKITITAA 506 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs--~e~R~ll~~~~~~~~~p~I~aa 506 (606)
+ +|.++ ..-.+.+...+..-|+|||++-+ ..++.... .+...++-+|+++
T Consensus 72 ~-----~~~~v--------~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~-~l~~~gi~fvdap 123 (467)
T TIGR00873 72 K-----AGAPV--------DAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK-ELKAKGILFVGSG 123 (467)
T ss_pred C-----CcHHH--------HHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH-HHHhcCCEEEcCC
Confidence 2 11111 11223444555667999999753 34555544 4677888888873
No 436
>PLN02740 Alcohol dehydrogenase-like
Probab=88.69 E-value=3.8 Score=44.28 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=30.5
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+.+|+|+|+|++|..++..+...|+++++.+|.
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 4679999999999999999999999988888765
No 437
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.67 E-value=1.9 Score=44.47 Aligned_cols=35 Identities=14% Similarity=0.346 Sum_probs=29.9
Q ss_pred hcCCcEEEECC---ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGa---GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++.|+|.|+ +|+|.++|+.|++.|. ++.++|.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecC
Confidence 56899999998 4999999999999997 67777654
No 438
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=88.67 E-value=1.4 Score=49.43 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=30.4
Q ss_pred hhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeE
Q 007355 358 NLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKI 391 (606)
Q Consensus 358 ~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~I 391 (606)
+...|++++|+|||+|..|..-|.+|--.|+..+
T Consensus 30 ~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 30 GASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 3688999999999999999999999999998544
No 439
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=88.66 E-value=2.1 Score=45.28 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=26.5
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++|||.|+ |.+|+++++.|+..|. +++.+|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~ 33 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR 33 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence 47999997 8899999999999996 56666653
No 440
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.64 E-value=0.58 Score=49.46 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
..||+|+|+|++|+.+|..|++.| ..+++++.+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 358999999999999999999999 6788877654
No 441
>PRK08643 acetoin reductase; Validated
Probab=88.63 E-value=2.6 Score=42.28 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=26.0
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 467888775 6899999999999996 6777764
No 442
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.62 E-value=3.4 Score=44.35 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=29.5
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 3679999999999999999888999988877664
No 443
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=88.59 E-value=0.85 Score=40.88 Aligned_cols=38 Identities=24% Similarity=0.166 Sum_probs=25.0
Q ss_pred hHHHhhc--cCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 467 RLTDLIL--SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 467 ~l~~li~--~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
.++++++ ..|+||+|+.+.....+.. .+.++|+.+|.+
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~~-~~L~~G~~VVt~ 89 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYYE-KALERGKHVVTA 89 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHHH-HHHHTTCEEEES
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHHH-HHHHCCCeEEEE
Confidence 3455555 7999999988766654433 456788988875
No 444
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=88.50 E-value=2.2 Score=49.50 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=61.4
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVV 443 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~ 443 (606)
+.+|+|+|.|-.|..+++.|...|+ +++++|.|. .+++.+ ++. +..+ +.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~----------------------~~v~~~----~~~--g~~v--~~ 448 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDI----------------------SAVNLM----RKY--GYKV--YY 448 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCH----------------------HHHHHH----HhC--CCeE--EE
Confidence 5689999999999999999999997 578888754 123322 221 2222 22
Q ss_pred cccCCCCCCCCCccccccccChhhHHHh-hccCCEEEEeCCChHHHHHHHHHHHcCC
Q 007355 444 MAIPMPGHPVPCQEEDSVLDDCRRLTDL-ILSHDVIFLLTDTRESRWLPTLLCANTN 499 (606)
Q Consensus 444 ~~Ipmpgh~~~~~~~~~~~~~~~~l~~l-i~~~DvV~~~tDs~e~R~ll~~~~~~~~ 499 (606)
.+. .+.+-+++. ++++|+|+.++|+.+.-..+...+++++
T Consensus 449 GDa----------------t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 449 GDA----------------TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred eeC----------------CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 111 234444443 6789999999999988877777777764
No 445
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.48 E-value=3.8 Score=43.62 Aligned_cols=33 Identities=33% Similarity=0.617 Sum_probs=29.2
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+.+|+|+|+|++|..++..+...|+ +++.+|.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999999999998 5777775
No 446
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=88.43 E-value=0.26 Score=52.48 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=28.8
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
-++|.|||+|..|+-+|..++..| =.+++.|..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G-~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAG-YDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcC-CceEEEeCC
Confidence 368999999999999999999944 678888876
No 447
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.43 E-value=5 Score=42.15 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.0
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+.+|+|.|+|++|..++..+...|.++++.+|.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 3789999999999999999999999987777654
No 448
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.34 E-value=1.3 Score=46.82 Aligned_cols=28 Identities=36% Similarity=0.667 Sum_probs=25.5
Q ss_pred EECCChHHHHHHHHHHHhCC-CeEEEEeC
Q 007355 369 LLGAGTLGCQVARMLMAWGV-RKITLLDN 396 (606)
Q Consensus 369 lvGaGgLGs~vA~~La~~GV-g~ItlVD~ 396 (606)
|||+|.+|+.+|..|+..|+ .+|.|+|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999998 57999886
No 449
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=88.27 E-value=2.2 Score=43.05 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.2
Q ss_pred hhcCCcEEEECCC-hHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGAG-TLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGaG-gLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.++++.++|.|+. ++|.++|+.|+..|.. +.++|.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~~ 42 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGINI 42 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEecC
Confidence 4778899999986 7999999999999964 455543
No 450
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.23 E-value=2 Score=43.40 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=28.3
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++++|.|+ ||+|..+|+.|++.|.. +.+++.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~-vv~~~~ 40 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGAD-IVGVGV 40 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecC
Confidence 67889999995 79999999999999974 566554
No 451
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=88.19 E-value=2.8 Score=43.55 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=24.3
Q ss_pred CcEEEECCChHHHHHHHHHHHh-CCCeEEEEeC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAW-GVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~-GVg~ItlVD~ 396 (606)
.||.|+|||.+|..+++.|... ++.-..+++.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~ 34 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVP 34 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEc
Confidence 3899999999999999999876 3443344443
No 452
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=88.15 E-value=0.65 Score=52.37 Aligned_cols=34 Identities=21% Similarity=0.419 Sum_probs=30.8
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++++|+|+|+||+|..++..|+..|+ +++++|.
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R 363 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR 363 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 567899999999999999999999998 8888764
No 453
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=88.12 E-value=0.59 Score=49.90 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=30.9
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCC-eEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVR-KITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg-~ItlVD~d 397 (606)
.||.|+|+|.+|+.+|..|+.-+++ .+.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4899999999999999999999999 99999965
No 454
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.07 E-value=0.21 Score=56.58 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=28.7
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
-+||.|||+|..|+.+|.+|+..| -.++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG-~~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAG-HQVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCC-CeEEEEeCC
Confidence 457999999999999999999999 467788764
No 455
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=88.07 E-value=1.9 Score=45.33 Aligned_cols=32 Identities=22% Similarity=0.456 Sum_probs=28.4
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+|.+||+|-.|..+|++|++.|. .++++|.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~ 33 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN 33 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 379999999999999999999995 78888774
No 456
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=87.99 E-value=2.9 Score=42.18 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=38.8
Q ss_pred cEEEECC-ChHHHHHHHHHHH----hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 366 KCLLLGA-GTLGCQVARMLMA----WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~----~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
.|+|.|+ ||+|.++|+.|++ .|. ++.+++.+ ..+.+.+++.++...|..++.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~----------------------~~~~~~~~~~l~~~~~~~~v~ 58 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARN----------------------DEALRQLKAEIGAERSGLRVV 58 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcC----------------------HHHHHHHHHHHHhcCCCceEE
Confidence 4677776 6899999999997 564 67776542 224455566666555666677
Q ss_pred EEeccc
Q 007355 441 GVVMAI 446 (606)
Q Consensus 441 ~~~~~I 446 (606)
.+..++
T Consensus 59 ~~~~Dl 64 (256)
T TIGR01500 59 RVSLDL 64 (256)
T ss_pred EEEecc
Confidence 666554
No 457
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=87.91 E-value=3.9 Score=39.58 Aligned_cols=60 Identities=32% Similarity=0.433 Sum_probs=41.8
Q ss_pred cEEEEC-CChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 007355 366 KCLLLG-AGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGVVM 444 (606)
Q Consensus 366 kVllvG-aGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~~~ 444 (606)
.++|+| .|++|-.+++.|+.-|..+|.++-... . +..+.+..-+.|++. +.+++.+..
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~----------------~---~~~~~~~~i~~l~~~--g~~v~~~~~ 60 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG----------------A---PSAEAEAAIRELESA--GARVEYVQC 60 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG----------------G---GSTTHHHHHHHHHHT--T-EEEEEE-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC----------------C---ccHHHHHHHHHHHhC--CCceeeecc
Confidence 478886 999999999999999999999965432 1 455666667777775 556666654
Q ss_pred cc
Q 007355 445 AI 446 (606)
Q Consensus 445 ~I 446 (606)
++
T Consensus 61 Dv 62 (181)
T PF08659_consen 61 DV 62 (181)
T ss_dssp -T
T ss_pred Cc
Confidence 43
No 458
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=87.91 E-value=2.3 Score=47.20 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=62.7
Q ss_pred cEEEECCChHHH-HHHHHHHH----hCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 366 KCLLLGAGTLGC-QVARMLMA----WGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 366 kVllvGaGgLGs-~vA~~La~----~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
||.|||+|+.-+ .+.+.|+. .++++|+|+|-|. ...+.+ + ...+.+.+++..+.++++
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~--------v-------~~~~~~~~~~~~~~~~v~ 64 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI--------V-------GALAKRMVKKAGLPIKVH 64 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH--------H-------HHHHHHHHHhhCCCeEEE
Confidence 799999999755 45666665 5789999999873 111100 1 223445555666666665
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeC--CChHHHHHHHHHHHcCCC
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLT--DTRESRWLPTLLCANTNK 500 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~t--Ds~e~R~ll~~~~~~~~~ 500 (606)
.. .+.++.+.++|+||.+. ...+.|..-.++..++|+
T Consensus 65 ~t-----------------------~d~~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi 103 (419)
T cd05296 65 LT-----------------------TDRREALEGADFVFTQIRVGGLEARALDERIPLKHGV 103 (419)
T ss_pred Ee-----------------------CCHHHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCC
Confidence 53 34577889999999986 344566666667777766
No 459
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.84 E-value=0.73 Score=48.13 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.3
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
-+||.|||+|..|+.+|..|++.|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999995 78888864
No 460
>PRK07832 short chain dehydrogenase; Provisional
Probab=87.82 E-value=2.1 Score=43.65 Aligned_cols=31 Identities=32% Similarity=0.555 Sum_probs=25.4
Q ss_pred CcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++|.|+ ||+|..+++.|+..|.. +.+++.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~-vv~~~r 32 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAE-LFLTDR 32 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence 36888885 89999999999999964 676664
No 461
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=87.71 E-value=2.6 Score=46.60 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=29.2
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.+++++|+|.|+ ||+|.++|+.|++.|. ++.++|.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r 210 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGA-KVVALTS 210 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 467889999998 8999999999999997 5555554
No 462
>PRK05086 malate dehydrogenase; Provisional
Probab=87.68 E-value=1.3 Score=47.16 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=27.6
Q ss_pred CcEEEECC-ChHHHHHHHHHHH-hCC-CeEEEEeCC
Q 007355 365 RKCLLLGA-GTLGCQVARMLMA-WGV-RKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGa-GgLGs~vA~~La~-~GV-g~ItlVD~d 397 (606)
.||+|+|+ |++|+.+|..|.. .+. ..++++|..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~ 36 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIA 36 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecC
Confidence 48999999 9999999999865 455 578999964
No 463
>PRK15076 alpha-galactosidase; Provisional
Probab=87.68 E-value=2 Score=47.90 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=55.2
Q ss_pred CcEEEECCChHHHHHHH--HHH-HhCC--CeEEEEeCCcccccCCCcCcCCCcchhcCCCChH-HHH-HHHHHHhhCCCc
Q 007355 365 RKCLLLGAGTLGCQVAR--MLM-AWGV--RKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFK-AMA-AVKSLERIFPAV 437 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~--~La-~~GV--g~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~K-aea-aa~~L~~inP~v 437 (606)
.||.|||+|++|...+. .++ ..+. .+|+|+|.|. .+.+ +.+ +.+.+....+.+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~--------------------er~~~~~~l~~~~~~~~~~~~ 61 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP--------------------ERLEESEIVARKLAESLGASA 61 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH--------------------HHHHHHHHHHHHHHHhcCCCe
Confidence 48999999999977655 554 2222 4899999743 1112 222 233333334445
Q ss_pred EEEEEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh--HHHH-HHHHHHHcCCCe
Q 007355 438 AAEGVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR--ESRW-LPTLLCANTNKI 501 (606)
Q Consensus 438 ~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~--e~R~-ll~~~~~~~~~p 501 (606)
+++.. .+..+.++++|+||.+.-.. +.++ .=.++..++|+.
T Consensus 62 ~i~~t-----------------------tD~~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~ 105 (431)
T PRK15076 62 KITAT-----------------------TDRREALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLR 105 (431)
T ss_pred EEEEE-----------------------CCHHHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCe
Confidence 55432 23356678999999997653 4344 223456666664
No 464
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.68 E-value=0.7 Score=48.03 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=29.2
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+||.|||+|.+|+.+|..|++.|. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 579999999999999999999997 78888864
No 465
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.66 E-value=2.7 Score=42.79 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=30.8
Q ss_pred hhhcCCcEEEECCC---hHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 360 DILSSRKCLLLGAG---TLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 360 ~~L~~~kVllvGaG---gLGs~vA~~La~~GVg~ItlVD~d 397 (606)
..++++.++|.|++ |+|.++|+.|+..|. ++.++|.+
T Consensus 4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~ 43 (260)
T PRK06603 4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQS 43 (260)
T ss_pred cccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCc
Confidence 35678899999996 799999999999997 57776653
No 466
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=87.60 E-value=2 Score=45.50 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=26.1
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
||+|.|+ |.+|+++++.|+..|...+..+|.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~ 33 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDK 33 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecC
Confidence 6999997 999999999999999765665554
No 467
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=87.52 E-value=3.5 Score=46.81 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=64.2
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh---HHHHHHHHHHhh-CCCcEEE
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF---KAMAAVKSLERI-FPAVAAE 440 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~---Kaeaaa~~L~~i-nP~v~v~ 440 (606)
.+|.+||+|..|+.+|++|++.|. ++++.|.+.=....+... .... |.. -+...++..+.+ .|.+-+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~---Ga~~~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKE---GNLPLYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhc---CCcccccCCCHHHHHhcCCCCCEEEE
Confidence 479999999999999999999995 677777642111100000 0000 110 112223333322 2444444
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhccCCEEEEeCCCh-H-HHHHHHHHHHcCCCeEEEEe
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLILSHDVIFLLTDTR-E-SRWLPTLLCANTNKITITAA 506 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~~~tDs~-e-~R~ll~~~~~~~~~p~I~aa 506 (606)
.+... +....-.+.+...+..-|+|||++-+. + ++. ....+.+.|+-+|++.
T Consensus 79 ~v~~~-------------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~-~~~~l~~~Gi~fldap 132 (493)
T PLN02350 79 LVKAG-------------APVDQTIKALSEYMEPGDCIIDGGNEWYENTER-RIKEAAEKGLLYLGMG 132 (493)
T ss_pred ECCCc-------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHH-HHHHHHHcCCeEEeCC
Confidence 33210 000011123334455678999997663 3 444 4666778899898873
No 468
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.48 E-value=2.7 Score=42.02 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=26.2
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+++|+|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r 34 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAINDR 34 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEec
Confidence 457888886 8899999999999997 5666664
No 469
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=87.47 E-value=1.6 Score=45.88 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=28.0
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+|.+||+|-.|..+|++|++.|. .++++|.+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~ 33 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ 33 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 69999999999999999999995 577888753
No 470
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.45 E-value=2.5 Score=47.29 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=30.7
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence 56799999999999999999999997 59998864
No 471
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=87.40 E-value=2.2 Score=47.31 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=24.4
Q ss_pred CcEEEECCChHHHHHHH--HHH---HhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVAR--MLM---AWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~--~La---~~GVg~ItlVD~d 397 (606)
.||.|||+|+.|...+. .++ .....+++|+|.|
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did 38 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDID 38 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCC
Confidence 37999999999998665 454 2333589999864
No 472
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.38 E-value=2.3 Score=43.76 Aligned_cols=36 Identities=17% Similarity=0.398 Sum_probs=30.7
Q ss_pred hhhcCCcEEEECC---ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 360 DILSSRKCLLLGA---GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 360 ~~L~~~kVllvGa---GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.++++++++|.|+ +|+|.++|+.|++.|. ++.+++.
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r 44 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQ 44 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcC
Confidence 4678899999998 5999999999999997 5677654
No 473
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=87.33 E-value=4 Score=44.08 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=28.1
Q ss_pred HHHhhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 468 LTDLILSHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 468 l~~li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
.++++.+.|+||+|+.....+.... .+.++|+++|..
T Consensus 72 ~~el~~~vDVVIdaT~~~~~~e~a~-~~~~aGk~VI~~ 108 (341)
T PRK04207 72 IEDLLEKADIVVDATPGGVGAKNKE-LYEKAGVKAIFQ 108 (341)
T ss_pred hhHhhccCCEEEECCCchhhHHHHH-HHHHCCCEEEEc
Confidence 4556678999999998877766554 667788988864
No 474
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=87.21 E-value=0.82 Score=47.81 Aligned_cols=32 Identities=34% Similarity=0.604 Sum_probs=28.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
+||.|||+|..|+.+|..|+..|. +++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999994 78888864
No 475
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=87.17 E-value=2 Score=44.21 Aligned_cols=59 Identities=25% Similarity=0.377 Sum_probs=43.8
Q ss_pred CCcccceEecccCCCChhhhhhhhHHhhhhhhhhhcCCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 318 KGRKVPRCISLAKSMDPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 318 ~gkl~p~~~dl~~~~dp~~la~~a~dlnlry~R~r~lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
.|+.+|... ++|.+ +-|++.+..+.++ +.+++||=|||| |..+++-||+.| .++|=+|-
T Consensus 31 ~g~f~~LH~-----~N~~r---------l~~i~~~~~~~~~---l~g~~vLDvGCG--gG~Lse~mAr~G-a~VtgiD~ 89 (243)
T COG2227 31 EGEFKPLHK-----INPLR---------LDYIREVARLRFD---LPGLRVLDVGCG--GGILSEPLARLG-ASVTGIDA 89 (243)
T ss_pred CCceeeeee-----eccch---------hhhhhhhhhcccC---CCCCeEEEecCC--ccHhhHHHHHCC-CeeEEecC
Confidence 777777663 45554 3466666555444 889999999999 459999999999 77777665
No 476
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=86.93 E-value=0.83 Score=48.79 Aligned_cols=33 Identities=33% Similarity=0.562 Sum_probs=29.9
Q ss_pred cEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 007355 366 KCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (606)
Q Consensus 366 kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~V 399 (606)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999995 6999998654
No 477
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.88 E-value=3.2 Score=47.54 Aligned_cols=34 Identities=26% Similarity=0.596 Sum_probs=29.6
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
+-+|+|+|+|.+|..+|+.|...|. .++++|.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence 4789999999999999999999995 578888743
No 478
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=86.85 E-value=2.5 Score=52.09 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.8
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
++++|+|||+|..|..+|..|++.|. +++|+|..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~ 462 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEAL 462 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecC
Confidence 47899999999999999999999996 78898865
No 479
>PRK00811 spermidine synthase; Provisional
Probab=86.84 E-value=2.2 Score=44.67 Aligned_cols=35 Identities=29% Similarity=0.522 Sum_probs=25.7
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
..++||++|+|+ |......|...++.+++.||-|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 367999999996 54444444445899999999864
No 480
>PRK08818 prephenate dehydrogenase; Provisional
Probab=86.83 E-value=3.2 Score=45.38 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.2
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+.+.+|+|||. |-+|..+|+.|-...-.+|+-+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 56789999999 999999999999754446777776
No 481
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=86.66 E-value=3.6 Score=50.30 Aligned_cols=41 Identities=20% Similarity=0.369 Sum_probs=34.9
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSN 403 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sN 403 (606)
-.++||+|||+|..|-++|..|++.| -++|++|...++.-|
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G-h~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG-HNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC-CeEEEEccccccccc
Confidence 47889999999999999999999999 569999986654333
No 482
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=86.66 E-value=0.46 Score=51.83 Aligned_cols=45 Identities=22% Similarity=0.427 Sum_probs=35.9
Q ss_pred cEEEECCChHHH-HHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCC
Q 007355 366 KCLLLGAGTLGC-QVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYT 411 (606)
Q Consensus 366 kVllvGaGgLGs-~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~ 411 (606)
||+++|+|.+|+ .+...|.++| -.|++||...--..-+++|-+|+
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g-~~V~~vd~~~~~v~aL~~qglY~ 47 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNG-FEVTFVDVNQELIDALNKRKSYQ 47 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCC-CeEEEEECCHHHHHHHhcCCCeE
Confidence 799999999998 7799999999 56999996544455667776664
No 483
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.65 E-value=3.1 Score=48.70 Aligned_cols=34 Identities=32% Similarity=0.550 Sum_probs=30.6
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
.+++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 46799999999999999999999996 68898865
No 484
>PRK09134 short chain dehydrogenase; Provisional
Probab=86.65 E-value=3.9 Score=41.14 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=24.5
Q ss_pred cCCcEEEECC-ChHHHHHHHHHHHhCCCeEE
Q 007355 363 SSRKCLLLGA-GTLGCQVARMLMAWGVRKIT 392 (606)
Q Consensus 363 ~~~kVllvGa-GgLGs~vA~~La~~GVg~It 392 (606)
.+++++|.|+ |++|..+++.|++.|...+.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~ 38 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAV 38 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEE
Confidence 4678999987 58999999999999974433
No 485
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=86.65 E-value=2.9 Score=43.67 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=26.0
Q ss_pred cEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 366 KCLLLGA-GTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 366 kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
||||.|+ |-+|+++++.|...| +++.+|..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~ 32 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH 32 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence 7999997 999999999999988 57777753
No 486
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=86.47 E-value=0.88 Score=49.90 Aligned_cols=57 Identities=21% Similarity=0.228 Sum_probs=40.9
Q ss_pred ChhhhhhhhHHhhhhhhhhhcCCcchhhhhcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 333 DPTRLAISAADLNLKLMRWRQLPSLNLDILSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 333 dp~~la~~a~dlnlry~R~r~lp~~~q~~L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
+....+|.+.-+=+.+.|. . ...|++++|.|||+|.+|..+|+.|...|+. +..+|+
T Consensus 91 na~aVAE~v~~~lL~l~r~-----~-g~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 91 NARGVVDYVLGSLLTLAER-----E-GVDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred ChHHHHHHHHHHHHHHhcc-----c-CCCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 3445666666543333332 1 1468899999999999999999999999984 555564
No 487
>PRK07856 short chain dehydrogenase; Provisional
Probab=86.47 E-value=2 Score=43.12 Aligned_cols=77 Identities=18% Similarity=0.200 Sum_probs=48.8
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCC-hHHHHHHHHHHhhCCCcEE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~-~Kaeaaa~~L~~inP~v~v 439 (606)
+++++++|.|+ |++|..+++.|+..|. +++++|.+.-... ......+-.-|+ .. ...+.+.+.+.+.++.+++
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~~~-~~~~~~~~~~D~---~~~~~~~~~~~~~~~~~~~id~ 78 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPETV-DGRPAEFHAADV---RDPDQVAALVDAIVERHGRLDV 78 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhhhh-cCCceEEEEccC---CCHHHHHHHHHHHHHHcCCCCE
Confidence 67899999997 6899999999999997 6888887642211 111222223455 33 2344555556665666665
Q ss_pred EEEe
Q 007355 440 EGVV 443 (606)
Q Consensus 440 ~~~~ 443 (606)
-.+.
T Consensus 79 vi~~ 82 (252)
T PRK07856 79 LVNN 82 (252)
T ss_pred EEEC
Confidence 5554
No 488
>PRK10537 voltage-gated potassium channel; Provisional
Probab=86.38 E-value=2.4 Score=46.71 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=59.3
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEE
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~ 441 (606)
.++.+|+|+|.|.+|..+++.|...|. .++++|.|.++ +. . ..| .+ -+.+
T Consensus 238 ~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~------~~------~-~~g--------------~~--vI~G 287 (393)
T PRK10537 238 HRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLE------HR------L-PDD--------------AD--LIPG 287 (393)
T ss_pred ccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhh------hh------c-cCC--------------Cc--EEEe
Confidence 346789999999999999999998885 67888876321 00 0 001 01 1222
Q ss_pred EecccCCCCCCCCCccccccccChhhHHH-hhccCCEEEEeCCChHHHHHHHHHHHcCCC
Q 007355 442 VVMAIPMPGHPVPCQEEDSVLDDCRRLTD-LILSHDVIFLLTDTRESRWLPTLLCANTNK 500 (606)
Q Consensus 442 ~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~-li~~~DvV~~~tDs~e~R~ll~~~~~~~~~ 500 (606)
.. .+.+.+++ -+++++.|+.++++.+.-..+...++..+.
T Consensus 288 D~-------------------td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~p 328 (393)
T PRK10537 288 DS-------------------SDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMSS 328 (393)
T ss_pred CC-------------------CCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhCC
Confidence 11 13444433 367899999999988777777777777663
No 489
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=86.31 E-value=4.1 Score=40.53 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=47.6
Q ss_pred hcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh-HHHHHHHHHHhhCCCcEE
Q 007355 362 LSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF-KAMAAVKSLERIFPAVAA 439 (606)
Q Consensus 362 L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~-Kaeaaa~~L~~inP~v~v 439 (606)
+++++++|.|+ |++|..+++.|++.|. +++++|.+..... .....+-.-|+ ... -.+.+.+.+.+.++.+++
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~~~~~--~~~~~~~~~D~---~~~~~~~~~~~~~~~~~~~id~ 79 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAFLTQE--DYPFATFVLDV---SDAAAVAQVCQRLLAETGPLDV 79 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecchhhhc--CCceEEEEecC---CCHHHHHHHHHHHHHHcCCCCE
Confidence 67889999997 6799999999999995 6777777652111 11111223355 221 233444455555565666
Q ss_pred EEEeccc
Q 007355 440 EGVVMAI 446 (606)
Q Consensus 440 ~~~~~~I 446 (606)
-.+...+
T Consensus 80 vi~~ag~ 86 (252)
T PRK08220 80 LVNAAGI 86 (252)
T ss_pred EEECCCc
Confidence 5555433
No 490
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=86.20 E-value=0.25 Score=58.63 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=29.1
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
++|.|||+|+.|+.+|..++..|+ .++++|.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence 579999999999999999999995 677888754
No 491
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=86.12 E-value=3.5 Score=43.09 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCcEEEECCChHHHHHHHHHHHhCCC--eEE-EEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEE
Q 007355 364 SRKCLLLGAGTLGCQVARMLMAWGVR--KIT-LLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAE 440 (606)
Q Consensus 364 ~~kVllvGaGgLGs~vA~~La~~GVg--~It-lVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~ 440 (606)
..||.|||||.+|..|++.|..-+.. .+. +.|.+. .|. +... +..++-.--+.|....|++-++
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~------~~~-----~~~~--~~~~~~~~l~~ll~~~~DlVVE 68 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA------DLP-----PALA--GRVALLDGLPGLLAWRPDLVVE 68 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH------HHH-----HHhh--ccCcccCCHHHHhhcCCCEEEE
Confidence 36899999999999999998764432 233 333321 000 0010 1122221123344556787777
Q ss_pred EEecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCCh---HHHHHHHHHHHcCCCe-EE-EEe-cCCc
Q 007355 441 GVVMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTR---ESRWLPTLLCANTNKI-TI-TAA-LGFD 510 (606)
Q Consensus 441 ~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~---e~R~ll~~~~~~~~~p-~I-~aa-lG~~ 510 (606)
.=.- ..-.+..+.+++ +.|+|+..+.-. +.+..+...|++.+.- +| +++ .|+|
T Consensus 69 ~A~~-----------------~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 69 AAGQ-----------------QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred CCCH-----------------HHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 5321 112445566666 789999875433 4566677788887753 34 333 4554
No 492
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=85.97 E-value=3.6 Score=44.37 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=28.3
Q ss_pred hhccCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE--ecCC
Q 007355 471 LILSHDVIFLLTDTRESRWLPTLLCANTNKITITA--ALGF 509 (606)
Q Consensus 471 li~~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a--alG~ 509 (606)
...+.|+||.|+.+....-+...+ .+.|+.+|+. +..+
T Consensus 65 ~~~~vD~Vf~alP~~~~~~~v~~a-~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLALPHGVSMDLAPQL-LEAGVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECCcccCC
Confidence 346799999999987776665554 5689999985 3555
No 493
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=85.92 E-value=3.5 Score=49.06 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=31.3
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCC
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNG 397 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d 397 (606)
-..++|+|||+|..|..+|..|++.|. +++++|..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 467899999999999999999999995 68999863
No 494
>PRK06179 short chain dehydrogenase; Provisional
Probab=85.91 E-value=4.8 Score=40.73 Aligned_cols=76 Identities=18% Similarity=0.050 Sum_probs=47.2
Q ss_pred CCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCC-hHHHHHHHHHHhhCCCcEEEE
Q 007355 364 SRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGD-FKAMAAVKSLERIFPAVAAEG 441 (606)
Q Consensus 364 ~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~-~Kaeaaa~~L~~inP~v~v~~ 441 (606)
+++|+|.|+ |++|..+++.|+..|.. +++++.+.-+.....+-. +-.-|+ .. ...+.+.+.+.+.+..+++-.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~~~~~~~~~~~-~~~~D~---~d~~~~~~~~~~~~~~~g~~d~li 78 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGYR-VFGTSRNPARAAPIPGVE-LLELDV---TDDASVQAAVDEVIARAGRIDVLV 78 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCChhhccccCCCe-eEEeec---CCHHHHHHHHHHHHHhCCCCCEEE
Confidence 567999996 89999999999999964 888887643333222221 223455 22 234555555555565555554
Q ss_pred Eec
Q 007355 442 VVM 444 (606)
Q Consensus 442 ~~~ 444 (606)
+..
T Consensus 79 ~~a 81 (270)
T PRK06179 79 NNA 81 (270)
T ss_pred ECC
Confidence 443
No 495
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.88 E-value=2.3 Score=42.79 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=28.4
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDN 396 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~ 396 (606)
++++++++|.|+ |++|.++|+.|+..|.. +.+++.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~-v~~~~~ 39 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAK-VAVLYN 39 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 356889999996 99999999999999964 555443
No 496
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.87 E-value=3.3 Score=44.30 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=50.7
Q ss_pred hhhhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCc
Q 007355 359 LDILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAV 437 (606)
Q Consensus 359 q~~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v 437 (606)
...+.++.++|.|+ .|+|-++|+.|+.-| .++++.-. ...|++.+++.|++-.+..
T Consensus 30 ~~~~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R----------------------~~~~~~~~~~~i~~~~~~~ 86 (314)
T KOG1208|consen 30 GIDLSGKVALVTGATSGIGFETARELALRG-AHVVLACR----------------------NEERGEEAKEQIQKGKANQ 86 (314)
T ss_pred cccCCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeC----------------------CHHHHHHHHHHHHhcCCCC
Confidence 35677788999997 689999999999999 77777433 2347888888888877777
Q ss_pred EEEEEeccc
Q 007355 438 AAEGVVMAI 446 (606)
Q Consensus 438 ~v~~~~~~I 446 (606)
++..+..++
T Consensus 87 ~i~~~~lDL 95 (314)
T KOG1208|consen 87 KIRVIQLDL 95 (314)
T ss_pred ceEEEECCC
Confidence 777777655
No 497
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=85.83 E-value=0.96 Score=46.92 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=27.8
Q ss_pred CcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 007355 365 RKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRV 399 (606)
Q Consensus 365 ~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~V 399 (606)
.+|+|||+|-.|+.+|..|++.|+. ++|+|...-
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4799999999999999999999976 888887553
No 498
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=85.78 E-value=2.7 Score=51.56 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=32.0
Q ss_pred hcCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 007355 362 LSSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGR 398 (606)
Q Consensus 362 L~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~ 398 (606)
-.++||+|||+|..|..+|..|++.|. +++++|...
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 367899999999999999999999996 799998654
No 499
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.64 E-value=5.9 Score=42.87 Aligned_cols=100 Identities=19% Similarity=0.092 Sum_probs=66.3
Q ss_pred cCCcEEEECCChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCChHHHHHHHHHHhhCCCcEEEEE
Q 007355 363 SSRKCLLLGAGTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDFKAMAAVKSLERIFPAVAAEGV 442 (606)
Q Consensus 363 ~~~kVllvGaGgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~Kaeaaa~~L~~inP~v~v~~~ 442 (606)
.+.+|.|+|+||+|-++...+..+|.++|.-||-.. .|-+-|+ .+-.+.+ +
T Consensus 185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~----------------------~Kl~~A~-----~fGAT~~--v 235 (366)
T COG1062 185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP----------------------EKLELAK-----KFGATHF--V 235 (366)
T ss_pred CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCH----------------------HHHHHHH-----hcCCcee--e
Confidence 467899999999999999999999999999998622 2222221 1211111 1
Q ss_pred ecccCCCCCCCCCccccccccChhhHHHhhc-cCCEEEEeCCChHHHHHHHHHHHcCCCeEEEE
Q 007355 443 VMAIPMPGHPVPCQEEDSVLDDCRRLTDLIL-SHDVIFLLTDTRESRWLPTLLCANTNKITITA 505 (606)
Q Consensus 443 ~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~-~~DvV~~~tDs~e~R~ll~~~~~~~~~p~I~a 505 (606)
+ ..+. ..-.+.+.++-. ..|.+|+|+.+.+....--.++.+.|.-+|-+
T Consensus 236 n-----------~~~~---~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iG 285 (366)
T COG1062 236 N-----------PKEV---DDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIG 285 (366)
T ss_pred c-----------chhh---hhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEe
Confidence 1 0000 011344455555 79999999999998776677777777766644
No 500
>PRK06398 aldose dehydrogenase; Validated
Probab=85.62 E-value=5.8 Score=40.13 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=49.8
Q ss_pred hhcCCcEEEECC-ChHHHHHHHHHHHhCCCeEEEEeCCcccccCCCcCcCCCcchhcCCCCh-HHHHHHHHHHhhCCCcE
Q 007355 361 ILSSRKCLLLGA-GTLGCQVARMLMAWGVRKITLLDNGRVAMSNPLRQSLYTLDDCLNGGDF-KAMAAVKSLERIFPAVA 438 (606)
Q Consensus 361 ~L~~~kVllvGa-GgLGs~vA~~La~~GVg~ItlVD~d~Ve~sNl~RQ~L~~~~Di~~~G~~-Kaeaaa~~L~~inP~v~ 438 (606)
.+++++|+|.|+ ||+|.++|+.|+..|. ++.++|.+.-... +.-+-.-|+ ..+ -++.+.+.+.+.+..++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~----~~~~~~~D~---~~~~~i~~~~~~~~~~~~~id 74 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN----DVDYFKVDV---SNKEQVIKGIDYVISKYGRID 74 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC----ceEEEEccC---CCHHHHHHHHHHHHHHcCCCC
Confidence 467899999996 5999999999999996 6777776542211 111223466 343 34555666666666666
Q ss_pred EEEEec
Q 007355 439 AEGVVM 444 (606)
Q Consensus 439 v~~~~~ 444 (606)
+-.+..
T Consensus 75 ~li~~A 80 (258)
T PRK06398 75 ILVNNA 80 (258)
T ss_pred EEEECC
Confidence 655543
Done!