Query 007356
Match_columns 606
No_of_seqs 82 out of 84
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 22:28:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007356.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007356hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14932 HAUS-augmin3: HAUS au 100.0 1.8E-56 4E-61 456.5 23.1 249 28-291 1-256 (256)
2 PRK11637 AmiB activator; Provi 93.8 5 0.00011 44.5 19.3 102 99-204 46-151 (428)
3 PF00038 Filament: Intermediat 91.1 4.9 0.00011 42.3 14.1 35 106-140 53-87 (312)
4 PF14932 HAUS-augmin3: HAUS au 86.4 5.9 0.00013 41.1 10.6 110 46-185 37-150 (256)
5 PF08317 Spc7: Spc7 kinetochor 84.1 65 0.0014 34.6 22.0 53 549-601 245-299 (325)
6 KOG4643 Uncharacterized coiled 80.7 1.6E+02 0.0034 36.6 28.9 243 285-593 376-623 (1195)
7 PF07888 CALCOCO1: Calcium bin 78.6 1.4E+02 0.003 34.8 21.2 59 262-335 328-386 (546)
8 PF13870 DUF4201: Domain of un 73.6 30 0.00064 33.7 10.0 107 262-384 58-164 (177)
9 KOG0804 Cytoplasmic Zn-finger 69.9 32 0.0007 38.6 10.2 84 110-193 371-454 (493)
10 PF04201 TPD52: Tumour protein 62.8 57 0.0012 32.0 9.3 83 97-184 26-108 (162)
11 PRK04863 mukB cell division pr 60.7 5.1E+02 0.011 34.0 24.6 114 473-597 772-906 (1486)
12 COG4942 Membrane-bound metallo 60.6 2.9E+02 0.0063 31.2 19.2 45 100-144 38-82 (420)
13 PF15397 DUF4618: Domain of un 60.5 2.3E+02 0.0049 29.9 14.3 53 124-186 41-93 (258)
14 PF09730 BicD: Microtubule-ass 60.1 3.8E+02 0.0082 32.4 30.1 58 265-333 263-320 (717)
15 PF07798 DUF1640: Protein of u 58.4 1.2E+02 0.0026 29.7 10.9 89 2-124 3-97 (177)
16 COG3074 Uncharacterized protei 57.8 90 0.0019 26.6 8.3 50 100-149 25-74 (79)
17 KOG0964 Structural maintenance 57.8 2.9E+02 0.0063 34.4 15.5 29 55-83 208-240 (1200)
18 PF04111 APG6: Autophagy prote 56.1 1.2E+02 0.0026 32.6 11.3 42 99-140 49-90 (314)
19 PRK11637 AmiB activator; Provi 55.2 3.3E+02 0.0072 30.2 19.0 121 268-393 55-183 (428)
20 smart00787 Spc7 Spc7 kinetocho 54.0 3.1E+02 0.0068 29.5 21.0 51 551-601 242-294 (312)
21 PF12718 Tropomyosin_1: Tropom 52.2 1.9E+02 0.0042 27.5 10.9 43 98-140 19-61 (143)
22 KOG0161 Myosin class II heavy 51.5 7.7E+02 0.017 33.3 30.1 56 373-428 1311-1367(1930)
23 cd07638 BAR_ACAP2 The Bin/Amph 48.1 2.5E+02 0.0053 28.5 11.4 52 170-230 57-114 (200)
24 PF04111 APG6: Autophagy prote 47.4 1.3E+02 0.0029 32.3 10.0 44 100-143 43-86 (314)
25 COG4372 Uncharacterized protei 46.8 1.9E+02 0.004 32.3 10.8 70 93-166 71-140 (499)
26 KOG0995 Centromere-associated 44.6 4.7E+02 0.01 30.6 14.1 41 5-47 129-172 (581)
27 KOG4674 Uncharacterized conser 44.2 9.4E+02 0.02 32.2 31.7 31 98-128 687-717 (1822)
28 PRK15422 septal ring assembly 42.2 2.2E+02 0.0047 24.9 8.4 22 101-122 26-47 (79)
29 TIGR03185 DNA_S_dndD DNA sulfu 41.3 6.6E+02 0.014 29.6 24.4 80 268-349 217-298 (650)
30 PF12325 TMF_TATA_bd: TATA ele 40.0 2.6E+02 0.0056 26.1 9.4 42 101-142 17-58 (120)
31 PF11802 CENP-K: Centromere-as 37.9 4.3E+02 0.0094 28.1 11.6 88 481-571 19-115 (268)
32 PF14662 CCDC155: Coiled-coil 36.8 3.8E+02 0.0081 27.2 10.5 28 101-128 30-57 (193)
33 PF07851 TMPIT: TMPIT-like pro 36.7 2.3E+02 0.005 30.9 9.7 30 410-441 216-245 (330)
34 COG0497 RecN ATPase involved i 36.4 7.7E+02 0.017 28.9 14.8 84 262-349 302-385 (557)
35 PF07106 TBPIP: Tat binding pr 35.9 1.4E+02 0.0029 28.9 7.3 38 98-135 70-107 (169)
36 PF08232 Striatin: Striatin fa 34.8 1.9E+02 0.0042 27.2 7.9 57 381-437 5-61 (134)
37 PF03801 Ndc80_HEC: HEC/Ndc80p 34.7 19 0.00042 34.7 1.2 38 5-46 96-139 (157)
38 KOG2391 Vacuolar sorting prote 34.7 2.2E+02 0.0047 31.3 9.0 35 103-137 242-276 (365)
39 PRK10884 SH3 domain-containing 34.7 3.5E+02 0.0075 27.5 10.2 21 108-128 94-114 (206)
40 cd07603 BAR_ACAPs The Bin/Amph 33.1 5.2E+02 0.011 26.0 11.4 110 101-229 3-113 (200)
41 KOG4010 Coiled-coil protein TP 32.8 3.6E+02 0.0077 27.3 9.5 38 97-134 41-78 (208)
42 PRK03947 prefoldin subunit alp 32.7 4.1E+02 0.0088 24.7 10.6 43 99-141 5-47 (140)
43 PF13851 GAS: Growth-arrest sp 32.6 3.3E+02 0.0071 27.4 9.6 20 121-140 100-119 (201)
44 PRK09039 hypothetical protein; 32.3 3.3E+02 0.0071 29.7 10.2 83 101-183 117-199 (343)
45 cd07601 BAR_APPL The Bin/Amphi 31.8 5.8E+02 0.013 26.1 12.2 108 102-229 4-117 (215)
46 PF03962 Mnd1: Mnd1 family; I 31.6 4.6E+02 0.01 26.1 10.4 11 217-227 160-170 (188)
47 cd07606 BAR_SFC_plant The Bin/ 30.3 4.7E+02 0.01 26.4 10.3 46 175-229 64-115 (202)
48 PF07139 DUF1387: Protein of u 29.0 4.6E+02 0.01 28.3 10.3 35 555-589 243-284 (302)
49 cd08776 DED_Caspase-like_repea 28.8 82 0.0018 26.8 3.8 51 34-86 15-65 (71)
50 COG1382 GimC Prefoldin, chaper 28.1 1.8E+02 0.0039 27.2 6.2 38 100-137 70-107 (119)
51 COG1579 Zn-ribbon protein, pos 28.1 6.4E+02 0.014 26.3 10.9 49 92-140 30-78 (239)
52 PF04912 Dynamitin: Dynamitin 27.6 4.3E+02 0.0093 29.1 10.3 107 481-597 264-387 (388)
53 PF03634 TCP: TCP family trans 26.5 28 0.00061 32.6 0.8 26 3-32 29-54 (138)
54 smart00787 Spc7 Spc7 kinetocho 26.4 5.4E+02 0.012 27.8 10.4 44 99-142 150-193 (312)
55 PF08317 Spc7: Spc7 kinetochor 26.4 4E+02 0.0087 28.6 9.6 14 173-186 275-288 (325)
56 PF14662 CCDC155: Coiled-coil 26.1 6.3E+02 0.014 25.6 10.0 25 163-187 105-129 (193)
57 COG3883 Uncharacterized protei 25.7 3.1E+02 0.0068 29.0 8.3 33 108-140 39-71 (265)
58 COG4026 Uncharacterized protei 25.5 4.4E+02 0.0096 27.4 9.0 76 103-196 131-206 (290)
59 PF09789 DUF2353: Uncharacteri 25.3 9.1E+02 0.02 26.3 12.1 73 485-566 79-151 (319)
60 cd07627 BAR_Vps5p The Bin/Amph 25.1 3.3E+02 0.0072 27.4 8.2 100 101-218 5-107 (216)
61 PF11559 ADIP: Afadin- and alp 25.0 5.8E+02 0.013 24.0 10.9 14 8-21 9-22 (151)
62 PRK10884 SH3 domain-containing 24.4 5.1E+02 0.011 26.3 9.3 25 100-124 93-117 (206)
63 PF05565 Sipho_Gp157: Siphovir 24.2 3E+02 0.0065 26.6 7.4 65 65-136 18-83 (162)
64 PF09304 Cortex-I_coil: Cortex 24.2 3.8E+02 0.0083 24.7 7.4 39 107-145 23-61 (107)
65 TIGR03752 conj_TIGR03752 integ 23.8 5.6E+02 0.012 29.4 10.2 40 101-140 60-99 (472)
66 TIGR03185 DNA_S_dndD DNA sulfu 23.3 1.3E+03 0.027 27.3 25.2 60 279-340 389-448 (650)
67 cd07602 BAR_RhoGAP_OPHN1-like 22.9 8.2E+02 0.018 24.9 12.1 20 172-191 65-84 (207)
68 PRK15422 septal ring assembly 22.4 5.3E+02 0.011 22.5 8.7 34 109-142 6-39 (79)
69 PF08614 ATG16: Autophagy prot 22.4 3.2E+02 0.0069 27.0 7.4 17 171-187 162-178 (194)
70 PF07106 TBPIP: Tat binding pr 22.2 4E+02 0.0087 25.6 7.9 56 281-345 86-141 (169)
71 PF06156 DUF972: Protein of un 22.1 1.9E+02 0.0041 26.4 5.2 78 470-554 3-82 (107)
72 KOG1962 B-cell receptor-associ 21.7 2.4E+02 0.0051 29.1 6.3 44 101-144 152-195 (216)
73 KOG4674 Uncharacterized conser 21.6 2.1E+03 0.046 29.2 32.7 162 266-428 911-1077(1822)
74 PF15456 Uds1: Up-regulated Du 21.5 6.8E+02 0.015 23.4 9.3 35 97-131 19-53 (124)
75 cd07637 BAR_ACAP3 The Bin/Amph 21.4 8.5E+02 0.018 24.5 11.5 184 101-320 3-195 (200)
76 KOG4809 Rab6 GTPase-interactin 21.3 4.8E+02 0.01 30.5 9.1 72 101-179 332-406 (654)
77 KOG4360 Uncharacterized coiled 21.1 8.3E+02 0.018 28.4 10.8 86 317-403 163-258 (596)
78 TIGR00634 recN DNA repair prot 20.9 1.3E+03 0.029 26.6 13.6 76 262-348 306-381 (563)
79 PRK14127 cell division protein 20.6 3E+02 0.0065 25.3 6.1 48 88-138 21-68 (109)
80 KOG4302 Microtubule-associated 20.4 1.5E+03 0.033 27.1 17.9 46 316-364 155-208 (660)
81 PF14988 DUF4515: Domain of un 20.3 7.2E+02 0.016 25.2 9.5 36 152-187 148-183 (206)
82 PF09727 CortBP2: Cortactin-bi 20.3 9.1E+02 0.02 24.5 11.9 92 342-433 57-152 (192)
83 cd07639 BAR_ACAP1 The Bin/Amph 20.2 9.1E+02 0.02 24.5 11.5 111 101-230 3-114 (200)
No 1
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=100.00 E-value=1.8e-56 Score=456.49 Aligned_cols=249 Identities=31% Similarity=0.419 Sum_probs=228.3
Q ss_pred ccCCCCCchhHHHHHHccCCCCCCCCHHHHhHHHHHHhcccCCChhhHHHHHhhcccccCCCCchhhhccchhhhhHHHH
Q 007356 28 WPFQYDDARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIRE 107 (606)
Q Consensus 28 Wlf~~~e~~~FL~Wfc~nV~~~NVLS~~EL~~fe~L~~sGkiLeg~aLd~aL~~i~~~~~~~~~~ed~~~~ee~lE~l~~ 107 (606)
|||++|+++|||+|||+||+++||||++|+++|++|+++||||+|+|||+||++|++++.+..++++ .
T Consensus 1 Wlf~~~e~~~FL~W~c~~V~~~NvLS~~El~~~~~L~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e------------~ 68 (256)
T PF14932_consen 1 WLFDDEEFESFLDWFCSNVNESNVLSEEELQAFEELQKSGKILEGEALDEALKTISAFSPKLLELEE------------E 68 (256)
T ss_pred CCCCCccHHHHHHHHHccCChhccCCHHHHHHHHHHHHcCCcCCHHHHHHHHHHcccccCCccccch------------H
Confidence 9999999999999999999999999999999999999999999999999999999997666665644 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHHHHHHHHh
Q 007356 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQELA 187 (606)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~~~v~~L~ 187 (606)
++++|+++++.++++++..++++|+|+.+++.+.+....+...++.+...++++...+.+.|.++|+.|+.+++.|++++
T Consensus 69 ~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~ 148 (256)
T PF14932_consen 69 DLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLA 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hh----hcC--CCCccceeccCChhhhhhchhhHHHHHHHHHhhccCCcccccccccCcccccccccccccccch-hhhh
Q 007356 188 HY----HSG--DEDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSLGDESNILVR-DLEK 260 (606)
Q Consensus 188 ~~----~s~--~~~gvflsq~~Le~Yl~qee~~t~~Lt~y~kKqF~~G~~~~v~~e~~~~~~~~~L~D~~~~~~d-~~e~ 260 (606)
++ +++ ++||+|||||||++|+++|++||+|||.||||||++||+++| |+++.++|+ |+|+++|+++ +.++
T Consensus 149 ~~~~~~~~~~~~~~~~flsq~~l~~Y~~~ee~~t~~L~~y~kKqF~~g~~~~~--e~s~~~~~~-lld~~~~~~~~d~~e 225 (256)
T PF14932_consen 149 SELAHAHSGQQQNPPVFLSQMPLEQYLSQEEQFTKYLTSYTKKQFFQGISELV--ESSNEDNFQ-LLDISNPSIRGDEEE 225 (256)
T ss_pred HHHHHhcccccCCCCchhhhCCHHHHHHHHHHHHHHHHHHHHHhcccccchhh--ccccchhhH-HhhccccccccchHH
Confidence 55 443 678899999999999999999999999999999999999999 677777777 8999999984 5556
Q ss_pred hhhhhHHHHHHHHHhHhhHHHHHHHHHHHHH
Q 007356 261 SHHQRVSELQRLRSVFGTSERQWVEAQVENA 291 (606)
Q Consensus 261 ~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~ 291 (606)
.+++|+.||+|||++|+||+||||.|+|+++
T Consensus 226 ~~~~~~~EL~rLq~~~~~aq~q~I~~ka~~~ 256 (256)
T PF14932_consen 226 VLEERRSELARLQSAYICAQHQLIQAKAEVA 256 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6666677999999999999999999999863
No 2
>PRK11637 AmiB activator; Provisional
Probab=93.84 E-value=5 Score=44.49 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=53.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHH
Q 007356 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGR 178 (606)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~ 178 (606)
.+.+++++..+..++.++..+++++.....+++.++.....+..........-+.++.++...+. +..+....+..
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~----eI~~~q~~l~~ 121 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNA----SIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34677777777777777777777777777777766666555544433333333444444444332 23333334444
Q ss_pred HHHHHHHHh--hhhcCCCCc--cceeccCC
Q 007356 179 IASTAQELA--HYHSGDEDG--IYLAYSDF 204 (606)
Q Consensus 179 l~~~v~~L~--~~~s~~~~g--vflsq~~L 204 (606)
......+++ .|-++.... ++++.-|+
T Consensus 122 ~~~~l~~rlra~Y~~g~~~~l~vLl~a~~~ 151 (428)
T PRK11637 122 QERLLAAQLDAAFRQGEHTGLQLILSGEES 151 (428)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHhcCCCh
Confidence 444444443 333332221 45555554
No 3
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.05 E-value=4.9 Score=42.26 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007356 106 REATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 106 ~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (606)
+.++..++..+.++...+..+...++.+...+..+
T Consensus 53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 34455555666666666666666666665555444
No 4
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=86.36 E-value=5.9 Score=41.14 Aligned_cols=110 Identities=25% Similarity=0.312 Sum_probs=62.7
Q ss_pred CCCCCCCCHHHHh-HHHHHHhcc-cC--CChhhHHHHHhhcccccCCCCchhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 007356 46 LRPSNVLSLSELS-QFEQFLQEE-KL--LEGEDLESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQR 121 (606)
Q Consensus 46 V~~~NVLS~~EL~-~fe~L~~sG-ki--Leg~aLd~aL~~i~~~~~~~~~~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk 121 (606)
+...+||+.++|. ++....... +. +++ .+.++. +++++.+++..+.++.....++.
T Consensus 37 ~~~GkiLeg~~Ld~aL~~~~~~~~~~~~~~e-----------------~~le~L---e~el~~l~~~~~~~~~~~~~lq~ 96 (256)
T PF14932_consen 37 QKSGKILEGEALDEALKTISAFSPKLLELEE-----------------EDLEAL---EEELEALQEYKELYEQLRNKLQQ 96 (256)
T ss_pred HHcCCcCCHHHHHHHHHHcccccCCccccch-----------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566799999998 444444331 12 222 222221 23555555666666666666666
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHHHHHHH
Q 007356 122 QLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQE 185 (606)
Q Consensus 122 ~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~~~v~~ 185 (606)
..+.+.+...+|+..- ..+....++..+...+.+...|..++.+++.++..+..
T Consensus 97 ~~~~~~~~~~~l~~~~----------~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~l~~~ 150 (256)
T PF14932_consen 97 LDSSLSQELSELEGKE----------EEAQKKLKKAQKELSAECSKLNNELNQLLGEVSKLASE 150 (256)
T ss_pred HHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555555531 12223333333445667888888888888777766553
No 5
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.07 E-value=65 Score=34.59 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh--hccccCchHHHHHHHHHHhcccccchhe
Q 007356 549 EMEKINAKLSVAVEEVTLEHCKKNE--ANFWCACRLLNITLRRLAFKGGFLSTSF 601 (606)
Q Consensus 549 ~le~ln~~l~~~l~dv~~~r~~~~E--v~Ff~~p~~L~~~Ve~le~q~~~~~~~~ 601 (606)
.++.++....++.+++....+...+ -+=..+-.+|+..|+-|+...|...+++
T Consensus 245 ~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~~ 299 (325)
T PF08317_consen 245 KIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVSI 299 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEEE
Confidence 3345556666666665554433222 2222345689999999999998877665
No 6
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=80.66 E-value=1.6e+02 Score=36.60 Aligned_cols=243 Identities=22% Similarity=0.187 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHHHHHHHhhhccchHHHHHHhchhcccccccch
Q 007356 285 EAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDY 364 (606)
Q Consensus 285 ~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~ 364 (606)
.+.-++-...+.|+.+++ + +++.+..|+.++.++-.+|+..++.+-.. |-.+.+.+|++.+.--
T Consensus 376 kllLEnrrlt~tleelqs---s-------s~Ee~~SK~leleke~KnLs~k~e~Leer-i~ql~qq~~eled~~K----- 439 (1195)
T KOG4643|consen 376 KLLLENRRLTGTLEELQS---S-------SYEELISKHLELEKEHKNLSKKHEILEER-INQLLQQLAELEDLEK----- 439 (1195)
T ss_pred HHHHHhHHHHHHHHHHhh---h-------hHHHHHHHHHHHHHHhHhHhHHHHHHHHH-HHHHHHHHHHHHHHHH-----
Confidence 344455555566666652 2 24677788888888777777666555433 4444444444433210
Q ss_pred hhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHhhhhhhhc
Q 007356 365 DLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALIEAASDV 444 (606)
Q Consensus 365 dLqiaRQ~yy~srQ~~vin~Li~Q~ar~elL~la~e~E~r~~~~~~~~L~~i~~eL~~~~~~~~~R~~~~~~~~q~~~~~ 444 (606)
+|+ +=.=.++-|.+++...+.-=.-...++.+-++...|+...+..+-+...+
T Consensus 440 ~L~--------------------------~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn- 492 (1195)
T KOG4643|consen 440 KLQ--------------------------FELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN- 492 (1195)
T ss_pred HHH--------------------------HHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 000 00001111122222222111222233333444444444444434222110
Q ss_pred ccCCCCCcchhhHHHHHHHhcCC-CCcccccccccChhhHHHHHHHHHHHHHHHHHhhhhcCccchhHHHHHHHHHHHHH
Q 007356 445 QEQGAVDDRDTFLHGVRDLLSIH-SNAQAGLSTYVSAPGIVQQISGLRADLTALQSDLENSLPGDRNRCINELCTLIQSL 523 (606)
Q Consensus 445 ~~~~~Id~rD~~~~rL~~lL~~~-~~~q~~f~ty~~~~~L~~~~~~L~~dl~~l~~~L~~~~~e~l~~~i~~L~~~~~~~ 523 (606)
....+..+|.=+.|+.....-- .+-+..-.+| .-+-+.+..|-+++..+...-+ .|-+.|-.||.- ..
T Consensus 493 -lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qy---e~~~~k~eeLe~~l~~lE~ENa-----~LlkqI~~Lk~t--~q 561 (1195)
T KOG4643|consen 493 -LNKSLNNRDLELSRLHALKNELKEQYKTCDIQY---ELLSNKLEELEELLGNLEEENA-----HLLKQIQSLKTT--SQ 561 (1195)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHH--hH
Confidence 3344555555566664333221 1224466677 7777777777777766655443 344455555552 11
Q ss_pred HHHhhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh----hccccCchHHHHHHHHHHhc
Q 007356 524 QQLLFASSTTAQPILTPRPLMKELDEMEKINAKLSVAVEEVTLEHCKKNE----ANFWCACRLLNITLRRLAFK 593 (606)
Q Consensus 524 ~qll~~~~t~~qp~Lt~~~l~~~~~~le~ln~~l~~~l~dv~~~r~~~~E----v~Ff~~p~~L~~~Ve~le~q 593 (606)
+..++ -..+..++...+...++.|.+..++..+.+..+ .|-|-+|--+|+.++-|...
T Consensus 562 n~~~L------------Eq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~ 623 (1195)
T KOG4643|consen 562 NGALL------------EQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRK 623 (1195)
T ss_pred HHHHH------------HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHH
Confidence 22221 111222333345666777777777776666433 78888887788888887765
No 7
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=78.63 E-value=1.4e+02 Score=34.75 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHHHH
Q 007356 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHK 335 (606)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~~~ 335 (606)
|..|+ |.+.|..-.+-+..++...++.....+.+|..-. +.-+.+|..|+.++..++..
T Consensus 328 h~aRL-e~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~--------------e~~k~~ie~L~~el~~~e~~ 386 (546)
T PF07888_consen 328 HQARL-EAAQLKLQLADASLELKEGRSQWAQEKQALQHSA--------------EADKDEIEKLSRELQMLEEH 386 (546)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHH
Confidence 34455 6666665555555556666655555555444211 34456677777777666643
No 8
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.61 E-value=30 Score=33.72 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=69.4
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHHHHHHHhhh
Q 007356 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 341 (606)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~~~i~~l~~ 341 (606)
.+.|-.||.+|+..++..-+.+-+.+-......+-+..++........ ....++..+..+..+...++.....+.
T Consensus 58 IeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~----~~~~~r~~l~~~k~~r~k~~~~~~~l~- 132 (177)
T PF13870_consen 58 IEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREE----ELAKLREELYRVKKERDKLRKQNKKLR- 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 356666999999999888888877777766666666666655533321 123555555566666665655555544
Q ss_pred ccchHHHHHHhchhcccccccchhhhhhhHHHHHHhHHHHHHH
Q 007356 342 ETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAFINH 384 (606)
Q Consensus 342 ~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~vin~ 384 (606)
.-..+.++|-|--||+-.+ ++....++.|.+|
T Consensus 133 --------~~~~~~~~P~ll~Dy~~~~---~~~~~l~~~i~~l 164 (177)
T PF13870_consen 133 --------QQGGLLGVPALLRDYDKTK---EEVEELRKEIKEL 164 (177)
T ss_pred --------HhcCCCCCcHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3467788999999995544 5555555555554
No 9
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.93 E-value=32 Score=38.61 Aligned_cols=84 Identities=11% Similarity=0.178 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHHHHHHHHhhh
Q 007356 110 QAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQELAHY 189 (606)
Q Consensus 110 e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~~~v~~L~~~ 189 (606)
..++++.+.+++.+..++.++++++..-.........+++....-.+++++.++..+..+..+...++.|..-+..|+.|
T Consensus 371 ~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~ 450 (493)
T KOG0804|consen 371 SDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFF 450 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhee
Confidence 33444444455555555555555555444443334444545566667778888888888888888999999999999988
Q ss_pred hcCC
Q 007356 190 HSGD 193 (606)
Q Consensus 190 ~s~~ 193 (606)
..++
T Consensus 451 le~q 454 (493)
T KOG0804|consen 451 LEAQ 454 (493)
T ss_pred hhhh
Confidence 6644
No 10
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=62.77 E-value=57 Score=31.98 Aligned_cols=83 Identities=13% Similarity=0.138 Sum_probs=49.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHH
Q 007356 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVL 176 (606)
Q Consensus 97 ~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L 176 (606)
..|++-|.|+.++-+.++||.+|.+-+..+..+...|...- +.--+..-....++-+..++..-+-.-.++.+++
T Consensus 26 LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL-----Git~l~elkqnlskg~~~vq~S~aY~gqKTsaa~ 100 (162)
T PF04201_consen 26 LSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL-----GITPLSELKQNLSKGWHDVQDSNAYKGQKTSAAF 100 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----CCchHHHHHHHHHHHhHhhhchhHHHHHHHHHHH
Confidence 45678899999999999999999999988888666555431 1111111112233333333322222235666667
Q ss_pred HHHHHHHH
Q 007356 177 GRIASTAQ 184 (606)
Q Consensus 177 ~~l~~~v~ 184 (606)
..+...+.
T Consensus 101 s~~g~~i~ 108 (162)
T PF04201_consen 101 SSVGSAIS 108 (162)
T ss_pred HHHHHHHH
Confidence 66666654
No 11
>PRK04863 mukB cell division protein MukB; Provisional
Probab=60.66 E-value=5.1e+02 Score=34.00 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=58.9
Q ss_pred ccccccChhhHHHHH-----HHHHHHHHHHHHhhhhcCccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCC--hhhHH
Q 007356 473 GLSTYVSAPGIVQQI-----SGLRADLTALQSDLENSLPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTP--RPLMK 545 (606)
Q Consensus 473 ~f~ty~~~~~L~~~~-----~~L~~dl~~l~~~L~~~~~e~l~~~i~~L~~~~~~~~qll~~~~t~~qp~Lt~--~~l~~ 545 (606)
-||+. |-+...| ..|..+...+....+ ++...+-.+.+.++.+++.+ .++-.+-+-| -+-+.
T Consensus 772 ~~p~~---p~~gr~are~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~r~~~~~~~~~---~~~~~~~f~~~pe~~~~ 840 (1486)
T PRK04863 772 RFPEV---PLFGRAAREKRIEQLRAEREELAERYA-----TLSFDVQKLQRLHQAFSRFI---GSHLAVAFEADPEAELR 840 (1486)
T ss_pred cCCCc---ccccHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHHHH---hhCcchhcCCCcHHHHH
Confidence 45555 6555444 444444444444444 55677888888888888877 3333333333 22122
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHhhhh--h--------hh---hccccCchHHHHHHHHHHhccccc
Q 007356 546 EL-DEMEKINAKLSVAVEEVTLEHCK--K--------NE---ANFWCACRLLNITLRRLAFKGGFL 597 (606)
Q Consensus 546 ~~-~~le~ln~~l~~~l~dv~~~r~~--~--------~E---v~Ff~~p~~L~~~Ve~le~q~~~~ 597 (606)
.+ ....++...|.++-+....-|.. + +. .-=..+|+.|-..|++++.++...
T Consensus 841 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 906 (1486)
T PRK04863 841 QLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQLDEA 906 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHHHHH
Confidence 22 33334444444444444333332 0 11 222345667777888887776543
No 12
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=60.63 E-value=2.9e+02 Score=31.17 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q 007356 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGR 144 (606)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~ 144 (606)
..+..++.++++++.++..-+++...+..++..++.-.+.+.+..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888899999999999999999998888888888776665544
No 13
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=60.54 E-value=2.3e+02 Score=29.93 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=27.5
Q ss_pred HHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHHHHHHHH
Q 007356 124 RHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIASTAQEL 186 (606)
Q Consensus 124 ~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~~~v~~L 186 (606)
..+.++.+.+....+++.+. -...+..+...|.+-..+++.-+..|...+..|
T Consensus 41 r~lLqqy~~~~~~i~~le~~----------~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l 93 (258)
T PF15397_consen 41 RKLLQQYDIYRTAIDILEYS----------NHKQLQQAKAELQEWEEKEESKLSKLQQQLEQL 93 (258)
T ss_pred HHHHHHHHHHHHHHHHHHcc----------ChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44556677777777666432 233344444445555555555544444444444
No 14
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=60.15 E-value=3.8e+02 Score=32.35 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHH
Q 007356 265 RVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLH 333 (606)
Q Consensus 265 r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~ 333 (606)
...|+..|+ .|+.++..+...+.+.|+-...++.... ..++..+.+|..|...+..+.
T Consensus 263 ~~~EiqKL~-------qQL~qve~EK~~L~~~L~e~Q~qLe~a~----~als~q~eki~~L~e~l~aL~ 320 (717)
T PF09730_consen 263 NLSEIQKLK-------QQLLQVEREKSSLLSNLQESQKQLEHAQ----GALSEQQEKINRLTEQLDALR 320 (717)
T ss_pred chHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 466888876 7888888888888888888877763332 112344555556555555554
No 15
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=58.44 E-value=1.2e+02 Score=29.73 Aligned_cols=89 Identities=16% Similarity=0.326 Sum_probs=47.6
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCCCCcccCCCCCchhHHH----HHHccCC--CCCCCCHHHHhHHHHHHhcccCCChhhH
Q 007356 2 SGARLCALLCELGYGGADSLDPDSFEWPFQYDDARPILD----WICSSLR--PSNVLSLSELSQFEQFLQEEKLLEGEDL 75 (606)
Q Consensus 2 ~g~~f~e~Lk~lGyp~a~~L~~edFdWlf~~~e~~~FL~----Wfc~nV~--~~NVLS~~EL~~fe~L~~sGkiLeg~aL 75 (606)
|--.|+..|.+-|||.. ..+...+ -++.++. ..++.|-.+++.-.-+.++ ++
T Consensus 3 DT~~~v~~Le~~Gft~~---------------QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a-------~~ 60 (177)
T PF07798_consen 3 DTHKFVKRLEAAGFTEE---------------QAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKA-------AI 60 (177)
T ss_pred cHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HH
Confidence 34579999999999984 3444444 3444443 2466777777765554443 22
Q ss_pred HHHHhhcccccCCCCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007356 76 ESAFDSISAFSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLR 124 (606)
Q Consensus 76 d~aL~~i~~~~~~~~~~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~ 124 (606)
.+.-..+.. ........++.+.+.|+.++..+...++
T Consensus 61 ~eLr~el~~------------~~k~~~~~lr~~~e~L~~eie~l~~~L~ 97 (177)
T PF07798_consen 61 AELRSELQN------------SRKSEFAELRSENEKLQREIEKLRQELR 97 (177)
T ss_pred HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 0112445556666666666666665544
No 16
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.84 E-value=90 Score=26.62 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhh
Q 007356 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVA 149 (606)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~ 149 (606)
.++|.|++.-..|..|+++++.....+..+-+-|......++.+.|++.+
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666667777777666666665555555555555444444443
No 17
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.79 E-value=2.9e+02 Score=34.39 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=19.0
Q ss_pred HHHhHHHHHHhcccCCC----hhhHHHHHhhcc
Q 007356 55 SELSQFEQFLQEEKLLE----GEDLESAFDSIS 83 (606)
Q Consensus 55 ~EL~~fe~L~~sGkiLe----g~aLd~aL~~i~ 83 (606)
+||+.|..|.+.-+.|| ..++.++...+.
T Consensus 208 eeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~ 240 (1200)
T KOG0964|consen 208 EELEKYQKLDKERRSLEYTIYDRELNEINGELE 240 (1200)
T ss_pred HHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHH
Confidence 57889999998877665 344444444433
No 18
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=56.07 E-value=1.2e+02 Score=32.61 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007356 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (606)
.++++.++.+.+.+.+++..+++....+..++..|+.....+
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666665555555554444
No 19
>PRK11637 AmiB activator; Provisional
Probab=55.16 E-value=3.3e+02 Score=30.19 Aligned_cols=121 Identities=8% Similarity=0.062 Sum_probs=54.5
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHHHHHHHhhhccchHH
Q 007356 268 ELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIPDL 347 (606)
Q Consensus 268 EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~~~i~~l~~~~lp~l 347 (606)
++..++.-..-.+.+.-.+..+......-+..+..+.... ..++..+..+|..++.+|..++.+++..... +-..
T Consensus 55 qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~----~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~-l~~r 129 (428)
T PRK11637 55 DIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRET----QNTLNQLNKQIDELNASIAKLEQQQAAQERL-LAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4444444444444444445555444444444444333221 1223455666666666666666665544432 3444
Q ss_pred HHHHhchhccc---ccccchhh-hhhh-H---HHHHHhHHHHHHHHHHHHhHHH
Q 007356 348 CWELAQLQDTY---ILQGDYDL-KVMR-Q---ELYISRQKAFINHLINQLARHQ 393 (606)
Q Consensus 348 ~~e~AqL~~~p---Il~GD~dL-qiaR-Q---~yy~srQ~~vin~Li~Q~ar~e 393 (606)
++...+.-+.+ ++-+..+. .+.| . .|+......+++.+..++....
T Consensus 130 lra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 130 LDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444422222 34444422 1222 2 2333344455555555554444
No 20
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=54.00 E-value=3.1e+02 Score=29.54 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh--hccccCchHHHHHHHHHHhcccccchhe
Q 007356 551 EKINAKLSVAVEEVTLEHCKKNE--ANFWCACRLLNITLRRLAFKGGFLSTSF 601 (606)
Q Consensus 551 e~ln~~l~~~l~dv~~~r~~~~E--v~Ff~~p~~L~~~Ve~le~q~~~~~~~~ 601 (606)
+..+....++.+++...++...+ .+=..+-.+|+..|+-|++..|...+++
T Consensus 242 ~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~~~~~ 294 (312)
T smart00787 242 EDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKITKL 294 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCeeEec
Confidence 34444444444444444443222 3344566799999999999999877665
No 21
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=52.24 E-value=1.9e+02 Score=27.51 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=32.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007356 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (606)
++..+++++......+.++..|++....+..++++++......
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777788888888888888888888888777765544
No 22
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=51.47 E-value=7.7e+02 Score=33.29 Aligned_cols=56 Identities=18% Similarity=0.138 Sum_probs=32.6
Q ss_pred HHHHhHHHHHHHHHHHH-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHH
Q 007356 373 LYISRQKAFINHLINQL-ARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATK 428 (606)
Q Consensus 373 yy~srQ~~vin~Li~Q~-ar~elL~la~e~E~r~~~~~~~~L~~i~~eL~~~~~~~~ 428 (606)
.-..|.+.-+.+-+.|. .-.+.|+=.++.|.-.....++.+.....+..++.....
T Consensus 1311 e~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e 1367 (1930)
T KOG0161|consen 1311 EEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFE 1367 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555444444333 334666667777777777777777766666665544433
No 23
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.08 E-value=2.5e+02 Score=28.49 Aligned_cols=52 Identities=23% Similarity=0.417 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCccceec------cCChhhhhhchhhHHHHHHHHHhhccCCc
Q 007356 170 LQMNDVLGRIASTAQELAHYHSGDEDGIYLAY------SDFHPYLLGDSSSMKELNQWFSKQLDSGP 230 (606)
Q Consensus 170 ~~~n~~L~~l~~~v~~L~~~~s~~~~gvflsq------~~Le~Yl~qee~~t~~Lt~y~kKqF~~G~ 230 (606)
.-+...|+++++..+++..|+. +++.| .||.+|...+-.-.+. .||+|....
T Consensus 57 e~i~~~l~kF~~~l~ei~~~~~-----~L~~q~~~~l~~~L~~F~k~dl~~vke----~kk~FdK~s 114 (200)
T cd07638 57 AVIETSLTKFSDTLQEMINYHT-----ILFDQAQRSIKAQLQTFVKEDLRKFKD----AKKQFDKVS 114 (200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHh
Confidence 3677889999999999988865 33333 2555555544433333 246666543
No 24
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=47.44 E-value=1.3e+02 Score=32.27 Aligned_cols=44 Identities=18% Similarity=0.322 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Q 007356 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQG 143 (606)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~ 143 (606)
+.++++.+++++|+.|...+.+.+..+......+......+...
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e 86 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEE 86 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666666665555444333
No 25
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=46.81 E-value=1.9e+02 Score=32.34 Aligned_cols=70 Identities=23% Similarity=0.251 Sum_probs=50.5
Q ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHH
Q 007356 93 EAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLS 166 (606)
Q Consensus 93 ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~ 166 (606)
+++| +++||+..++.++.|+...+..|......+++...-....-+....-...-..+++++..++..|.
T Consensus 71 ~gVf----qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~la 140 (499)
T COG4372 71 SGVF----QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELA 140 (499)
T ss_pred hhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777 899999999999999999999999998888877766555544432222222566666666665443
No 26
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.61 E-value=4.7e+02 Score=30.60 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=26.6
Q ss_pred hHHHHHHhcCCCCCCCCCCCCCcc---cCCCCCchhHHHHHHccCC
Q 007356 5 RLCALLCELGYGGADSLDPDSFEW---PFQYDDARPILDWICSSLR 47 (606)
Q Consensus 5 ~f~e~Lk~lGyp~a~~L~~edFdW---lf~~~e~~~FL~Wfc~nV~ 47 (606)
+.+..||.||||=....+ +.-= +=.-|-+...|.|+.+-++
T Consensus 129 EV~~ilK~L~YPf~~siS--s~~a~gspH~WP~iL~mlhWlvdlI~ 172 (581)
T KOG0995|consen 129 EVVQILKNLKYPFLLSIS--SLQAAGSPHNWPHILGMLHWLVDLIR 172 (581)
T ss_pred HHHHHHHhCCCCcccchh--hhccCCCCCccHHHHHHHHHHHHHHH
Confidence 457889999999765543 1110 1133678889999985444
No 27
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=44.16 E-value=9.4e+02 Score=32.23 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=20.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007356 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQC 128 (606)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~ 128 (606)
+.+.++.|++.++.|+.++.+|..+..-++.
T Consensus 687 A~ekle~L~~~ie~~K~e~~tL~er~~~l~~ 717 (1822)
T KOG4674|consen 687 AKEKLENLEKNLELTKEEVETLEERNKNLQS 717 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777788877777766554443
No 28
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.20 E-value=2.2e+02 Score=24.89 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQ 122 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~ 122 (606)
++|.+++.-..|..+++.+...
T Consensus 26 EieELKekn~~L~~e~~~~~~~ 47 (79)
T PRK15422 26 EIEELKEKNNSLSQEVQNAQHQ 47 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3334433333444444443333
No 29
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.29 E-value=6.6e+02 Score=29.59 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=48.8
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhc--cCccccccccchhhhhHhhHHHHHhhHHHHHHHhhhccch
Q 007356 268 ELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVA--SDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIP 345 (606)
Q Consensus 268 EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~--~~~~~~~~d~~~L~~~i~~l~~el~~L~~~i~~l~~~~lp 345 (606)
++..++.-..-...++-..+.+.....+.+..++.... |.. .-..-..|..++..+..++...+.++..+.+..+|
T Consensus 217 el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~--~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p 294 (650)
T TIGR03185 217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGD--LFEEREQLERQLKEIEAARKANRAQLRELAADPLP 294 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 34444444444445555555555555555555554322 221 11112478888899999999999999999988887
Q ss_pred HHHH
Q 007356 346 DLCW 349 (606)
Q Consensus 346 ~l~~ 349 (606)
-++-
T Consensus 295 ~~l~ 298 (650)
T TIGR03185 295 LLLI 298 (650)
T ss_pred Hhhh
Confidence 7553
No 30
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=40.05 E-value=2.6e+02 Score=26.10 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQ 142 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~ 142 (606)
.++.+...+..++-|+..++.++..+...++.+..-...+..
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~ 58 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLME 58 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788888888888888888888888887776555533
No 31
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=37.87 E-value=4.3e+02 Score=28.06 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcCcc-------chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCChhhHHHH--HHHH
Q 007356 481 PGIVQQISGLRADLTALQSDLENSLPG-------DRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKEL--DEME 551 (606)
Q Consensus 481 ~~L~~~~~~L~~dl~~l~~~L~~~~~e-------~l~~~i~~L~~~~~~~~qll~~~~t~~qp~Lt~~~l~~~~--~~le 551 (606)
..|...++.++.++...|..|.-..++ ++.=.+.++...-..++|.. ..+-+.+=+.+++...+ .++.
T Consensus 19 ~~l~~eCEe~wk~me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwq---k~~peii~~n~~VL~~lgkeelq 95 (268)
T PF11802_consen 19 EELIKECEELWKDMEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQ---KRTPEIIPLNPEVLLTLGKEELQ 95 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHH---hcCCCcCCCCHHHHHHHHHHHHH
Confidence 677888889999999999998777555 22222333333333445555 44445445556776666 7888
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 007356 552 KINAKLSVAVEEVTLEHCKK 571 (606)
Q Consensus 552 ~ln~~l~~~l~dv~~~r~~~ 571 (606)
++.+-|..++.-++.|+.+.
T Consensus 96 kl~~eLe~vLs~~q~KnekL 115 (268)
T PF11802_consen 96 KLISELEMVLSTVQSKNEKL 115 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988884
No 32
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=36.79 E-value=3.8e+02 Score=27.18 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQC 128 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~ 128 (606)
+++-+++.-.+|..++-+|.++..++++
T Consensus 30 ~ve~~ee~na~L~~e~~~L~~q~~s~Qq 57 (193)
T PF14662_consen 30 SVETAEEGNAQLAEEITDLRKQLKSLQQ 57 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555554443
No 33
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=36.71 E-value=2.3e+02 Score=30.93 Aligned_cols=30 Identities=23% Similarity=0.096 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhhhHHhhhhh
Q 007356 410 YSLLKVIESELQGYLSATKSRVGRCLALIEAA 441 (606)
Q Consensus 410 ~~~L~~i~~eL~~~~~~~~~R~~~~~~~~q~~ 441 (606)
+...-.+++-|+.+-+. +|+=++.++....
T Consensus 216 f~~~~~~vq~lQ~~YQ~--~~Ly~l~AlG~~~ 245 (330)
T PF07851_consen 216 FSLYQSVVQFLQYRYQR--GCLYRLRALGKRH 245 (330)
T ss_pred HHHHHHHHHHHHHHHHH--hHHHHHHHhccCc
Confidence 44455666666655543 5666666775544
No 34
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=36.37 E-value=7.7e+02 Score=28.94 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHHHHHHHhhh
Q 007356 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 341 (606)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~~~i~~l~~ 341 (606)
.+.|+..|.+|.-=|.++=-.++.-..+..-..+.|..-.+. .. -...+...+..+.......|+..+++...=+.
T Consensus 302 ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~---~~-~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~ 377 (557)
T COG0497 302 VEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEES---LE-ALEKEVKKLKAELLEAAEALSAIRKKAAKELE 377 (557)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888899988888876665554433332222222222111 10 00111234555555556666666666655444
Q ss_pred ccchHHHH
Q 007356 342 ETIPDLCW 349 (606)
Q Consensus 342 ~~lp~l~~ 349 (606)
..|-.-++
T Consensus 378 ~~v~~eL~ 385 (557)
T COG0497 378 KEVTAELK 385 (557)
T ss_pred HHHHHHHH
Confidence 44443333
No 35
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=35.92 E-value=1.4e+02 Score=28.87 Aligned_cols=38 Identities=24% Similarity=0.502 Sum_probs=25.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 007356 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTA 135 (606)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~ 135 (606)
+.+++.++..++..|++++..++.....+...++.|..
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777767777777777777777776666555544
No 36
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=34.77 E-value=1.9e+02 Score=27.23 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=51.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHh
Q 007356 381 FINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLAL 437 (606)
Q Consensus 381 vin~Li~Q~ar~elL~la~e~E~r~~~~~~~~L~~i~~eL~~~~~~~~~R~~~~~~~ 437 (606)
|+++|=.+++||+-=+.+-++|+..|+.--.+|+.=...++.-...+..|+.||--.
T Consensus 5 Vl~fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~a 61 (134)
T PF08232_consen 5 VLHFLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYA 61 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999888888888888899999887655
No 37
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=34.71 E-value=19 Score=34.74 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=24.5
Q ss_pred hHHHHHHhcCCCCCCCCCCCCCcccC--CC----CCchhHHHHHHccC
Q 007356 5 RLCALLCELGYGGADSLDPDSFEWPF--QY----DDARPILDWICSSL 46 (606)
Q Consensus 5 ~f~e~Lk~lGyp~a~~L~~edFdWlf--~~----~e~~~FL~Wfc~nV 46 (606)
++..+||.||||.+ +++. -||. .. |-.-..|.|+|.-+
T Consensus 96 ev~~~lK~L~YP~~-~isK---S~L~a~gs~hsWP~lL~~L~WLv~l~ 139 (157)
T PF03801_consen 96 EVPFLLKALGYPFA-TISK---SSLQAPGSPHSWPHLLGALHWLVELI 139 (157)
T ss_dssp HHHHHHHHTT-SS-----H---HHHHSTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcc-ccCH---HHccCCCCcccHHHHHHHHHHHHHHH
Confidence 67889999999997 7766 4555 22 45678899999743
No 38
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.70 E-value=2.2e+02 Score=31.25 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007356 103 KDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHA 137 (606)
Q Consensus 103 E~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~a 137 (606)
|+|.....+|+.++.+|+++...++...+-|..+.
T Consensus 242 EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 242 EELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34455677777777777777777777777666654
No 39
>PRK10884 SH3 domain-containing protein; Provisional
Probab=34.69 E-value=3.5e+02 Score=27.49 Aligned_cols=21 Identities=10% Similarity=0.248 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007356 108 ATQAYRDEAAQLQRQLRHLQC 128 (606)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l~~ 128 (606)
-+.+++.++.+++..++.+..
T Consensus 94 rlp~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554444443
No 40
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.12 E-value=5.2e+02 Score=25.99 Aligned_cols=110 Identities=10% Similarity=0.148 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIA 180 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~ 180 (606)
.|++.|.+++.|+..+..+.|..+.+..--..+..-.....+.. ...... . .....+...|.+++
T Consensus 3 ~l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L-------~~~~~~-------~-~~d~~i~~~l~kF~ 67 (200)
T cd07603 3 SLEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSL-------NDLSDY-------F-RDDSLVQNCLNKFI 67 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhcc-------c-CCcHHHHHHHHHHH
Confidence 45556666667777666666666554432222211111111111 111111 1 11225567888888
Q ss_pred HHHHHHhhhhcCCC-CccceeccCChhhhhhchhhHHHHHHHHHhhccCC
Q 007356 181 STAQELAHYHSGDE-DGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (606)
Q Consensus 181 ~~v~~L~~~~s~~~-~gvflsq~~Le~Yl~qee~~t~~Lt~y~kKqF~~G 229 (606)
...+++..|+...- +---+--.||+.|+..+-.-.+.. ||+|...
T Consensus 68 ~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL~~vKE~----kk~Fdk~ 113 (200)
T cd07603 68 QALQEMNNFHTILLDQAQRTVSTQLQNFVKEDIKKVKES----KKHFEKI 113 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHH
Confidence 88888887754110 001122347888887776655543 3666554
No 41
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=32.81 E-value=3.6e+02 Score=27.29 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=29.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007356 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLT 134 (606)
Q Consensus 97 ~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~ 134 (606)
..+++-|.|+.++-++|+||.+|..-+...+.+..+|.
T Consensus 41 LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELK 78 (208)
T KOG4010|consen 41 LSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELK 78 (208)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778899999999999999998888777544443
No 42
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=32.72 E-value=4.1e+02 Score=24.66 Aligned_cols=43 Identities=30% Similarity=0.408 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007356 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLM 141 (606)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~ 141 (606)
+.+++.+...++.|+.+++.++.++..+...+..+.....++.
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777888888888888888888887777777665553
No 43
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=32.64 E-value=3.3e+02 Score=27.39 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=8.1
Q ss_pred HHHHHHHHhhhhhHHHHHHH
Q 007356 121 RQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 121 k~~~~l~~~~n~L~~~as~l 140 (606)
+++..+.|...-|......+
T Consensus 100 k~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 100 KELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333
No 44
>PRK09039 hypothetical protein; Validated
Probab=32.33 E-value=3.3e+02 Score=29.66 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIA 180 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~ 180 (606)
.+..+..++...+.+..+...+...|..++..|..+...+............+...++......|...-.+....|..+.
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~ 196 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYR 196 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44444555555556666666666666666655555544443333333333344444444444444333333333444444
Q ss_pred HHH
Q 007356 181 STA 183 (606)
Q Consensus 181 ~~v 183 (606)
+.+
T Consensus 197 ~~~ 199 (343)
T PRK09039 197 SEF 199 (343)
T ss_pred HHH
Confidence 443
No 45
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.82 E-value=5.8e+02 Score=26.14 Aligned_cols=108 Identities=12% Similarity=0.131 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHHH
Q 007356 102 LKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIAS 181 (606)
Q Consensus 102 lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~~ 181 (606)
|+.+|.+...|++-+..|-+..+....-.+.+..-........+......=. +.....-+.+.|.+++.
T Consensus 4 l~~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~-----------~~~dDe~~~~~l~kFs~ 72 (215)
T cd07601 4 LNVFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFE-----------LGRDDEILVSTLKQFSK 72 (215)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----------CCCCcHHHHHHHHHHHH
Confidence 4555666667777777776666666555554444433333333222111000 01222233357888999
Q ss_pred HHHHHhhhhcCCCCccceec------cCChhhhhhchhhHHHHHHHHHhhccCC
Q 007356 182 TAQELAHYHSGDEDGIYLAY------SDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (606)
Q Consensus 182 ~v~~L~~~~s~~~~gvflsq------~~Le~Yl~qee~~t~~Lt~y~kKqF~~G 229 (606)
...++..|+. ++++| .||++|+..+-.-.+. .||.|+..
T Consensus 73 ~l~El~~~~~-----~L~~q~~~~l~~pL~~F~k~Dl~~vKe----~kK~FdK~ 117 (215)
T cd07601 73 VVDELSTMHS-----TLSSQLADTVLHPISQFMESDLAEIMT----LKELFKAA 117 (215)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHH
Confidence 9999988865 33332 3677777665544443 34666544
No 46
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.61 E-value=4.6e+02 Score=26.07 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=8.8
Q ss_pred HHHHHHHhhcc
Q 007356 217 ELNQWFSKQLD 227 (606)
Q Consensus 217 ~Lt~y~kKqF~ 227 (606)
.|..|++++|.
T Consensus 160 ~l~~~~~~k~~ 170 (188)
T PF03962_consen 160 SLKSYLKKKFG 170 (188)
T ss_pred HHHHHHHHhcC
Confidence 78888888873
No 47
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.29 E-value=4.7e+02 Score=26.42 Aligned_cols=46 Identities=15% Similarity=0.348 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcccee------ccCChhhhhhchhhHHHHHHHHHhhccCC
Q 007356 175 VLGRIASTAQELAHYHSGDEDGIYLA------YSDFHPYLLGDSSSMKELNQWFSKQLDSG 229 (606)
Q Consensus 175 ~L~~l~~~v~~L~~~~s~~~~gvfls------q~~Le~Yl~qee~~t~~Lt~y~kKqF~~G 229 (606)
.|.+++.+.+++..|+. ++++ -.||.+|...+-.-.+. .||+|+..
T Consensus 64 ~l~kF~~~l~ei~~~~~-----~L~~q~~~~l~~pL~~F~k~Dl~~vKe----~kK~FdK~ 115 (202)
T cd07606 64 VMTKFTSALREIGSYKE-----VLRSQVEHMLNDRLAQFADTDLQEVKD----ARRRFDKA 115 (202)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 68888888888888764 2222 23666666544443332 24666554
No 48
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=29.02 E-value=4.6e+02 Score=28.35 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH---hhhhhhh----hccccCchHHHHHHHH
Q 007356 555 AKLSVAVEEVTL---EHCKKNE----ANFWCACRLLNITLRR 589 (606)
Q Consensus 555 ~~l~~~l~dv~~---~r~~~~E----v~Ff~~p~~L~~~Ve~ 589 (606)
.+|.++-+|+|- +|+---| ..|.||+|.|+..|-.
T Consensus 243 ~Ql~ELRadIK~fvs~rk~de~lg~~~rf~~d~~~l~~~i~~ 284 (302)
T PF07139_consen 243 EQLAELRADIKHFVSERKYDEELGRAARFTCDPEQLKKSIMS 284 (302)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHhHhhhcccCHHHHHHHHHh
Confidence 455555555554 3433223 9999999999998864
No 49
>cd08776 DED_Caspase-like_repeat1 Death effector domain, repeat 1, of initator caspase-like proteins. Death Effector Domain (DED), first repeat, found in initator caspase-like proteins, like caspase-8 and -10 and c-FLIP. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-8 and -10 are the initiators of death receptor mediated apoptosis. Together with FADD and the pseudo-caspase c-FLIP, they form the death-inducing signaling complex (DISC), whose formation is triggered by the activation of type 1 tumor necrosis factor (TNF) receptors such as Fas, TNF receptor 1, and TRAIL receptor. Caspase-8 and -10 also play important functions in cell adhesion and motility. c-FLIP is a catalytically inactive homolog of the initator procaspases-8 and -10. It negatively influences apoptotic signaling by interfering with the efficient formation of DI
Probab=28.84 E-value=82 Score=26.77 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=39.7
Q ss_pred CchhHHHHHHccCCCCCCCCHHHHhHHHHHHhcccCCChhhHHHHHhhccccc
Q 007356 34 DARPILDWICSSLRPSNVLSLSELSQFEQFLQEEKLLEGEDLESAFDSISAFS 86 (606)
Q Consensus 34 e~~~FL~Wfc~nV~~~NVLS~~EL~~fe~L~~sGkiLeg~aLd~aL~~i~~~~ 86 (606)
+...-++|+|..+=|.+.+.. =...|..|+..|++ +-.-|.|.|-.|...+
T Consensus 15 ~e~~~lkFLC~d~ip~~~le~-~~~lf~~L~e~~~L-~~~fL~ElL~~I~R~D 65 (71)
T cd08776 15 DEREVLLFLLNVFIPQPTLAQ-LIGALRALKEEGRL-TLPLLAECLYRAGRRD 65 (71)
T ss_pred HHHHHHHHHcccccccccchh-HHHHHHHHHHcCCC-CHHHHHHHHHHhCHHH
Confidence 334568999999888887765 56679999999998 4467888888887543
No 50
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=28.10 E-value=1.8e+02 Score=27.24 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=31.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007356 100 EGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHA 137 (606)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~a 137 (606)
+.+++|++.++.|+..+.+|+++-..+..++.+|+...
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888999999999999988888888888764
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.07 E-value=6.4e+02 Score=26.34 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=33.8
Q ss_pred hhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007356 92 QEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 92 ~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (606)
++++......++.+.+.+++++.++.++++++..+...+.++.......
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~ 78 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRA 78 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555667777777788888888888888877777666665554433
No 52
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=27.59 E-value=4.3e+02 Score=29.08 Aligned_cols=107 Identities=13% Similarity=0.181 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhc-CccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 007356 481 PGIVQQISGLRADLTALQSDLENS-LPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINAKLSV 559 (606)
Q Consensus 481 ~~L~~~~~~L~~dl~~l~~~L~~~-~~e~l~~~i~~L~~~~~~~~qll~~~~t~~qp~Lt~~~l~~~~~~le~ln~~l~~ 559 (606)
.++......|..++..+...-... .....+.-|++||..+...+.+. =.-|.|.+-|-.|..|+.....
T Consensus 264 d~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~----------~~lP~lv~RL~tL~~lH~~a~~ 333 (388)
T PF04912_consen 264 DSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYA----------PSLPSLVERLKTLKSLHEEAAE 333 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHh----------hhhhHHHHHHHHHHHHHHHHHH
Confidence 566666666666665554332222 11133678999999988888877 3346666666555555444333
Q ss_pred --------------HHHHHHHhhhh--hhhhccccCchHHHHHHHHHHhccccc
Q 007356 560 --------------AVEEVTLEHCK--KNEANFWCACRLLNITLRRLAFKGGFL 597 (606)
Q Consensus 560 --------------~l~dv~~~r~~--~~Ev~Ff~~p~~L~~~Ve~le~q~~~~ 597 (606)
+-.+++.-+.. .++--|=.|-..+...|+.|+.|+..+
T Consensus 334 ~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 334 FSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333332222 133568888899999999999998765
No 53
>PF03634 TCP: TCP family transcription factor; InterPro: IPR005333 The TCP transcription factor family was named after: teosinte branched 1 (tb1, Zea mays (Maize)) [], cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) [] and PCF in rice (Oryza sativa) [, ]. The TCP proteins code for structurally related proteins implicated in the evolution of key morphological traits []. However, the biochemical function of CYC and TB1 proteins remains to be demonstrated. One of the conserved regions is predicted to form a non-canonical basic-Helix-Loop-Helix (bHLP) structure. This domain is also found in two rice DNA-binding proteins, PCF1 and PCF2, where it has been shown to be involved in DNA-binding and dimerization. This family of transcription factors are exclusive to higher plants. They can be divided into two groups, TCP-C and TCP-P, that appear to have separated following an early gene duplication event []. This duplication event may have led to functional divergence and it has been proposed that that the TCP-P subfamily are transcriptional repressors, while the TPC-C subfamily are transcription activators [].
Probab=26.54 E-value=28 Score=32.61 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=21.8
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCcccCCC
Q 007356 3 GARLCALLCELGYGGADSLDPDSFEWPFQY 32 (606)
Q Consensus 3 g~~f~e~Lk~lGyp~a~~L~~edFdWlf~~ 32 (606)
..+|.++=..||||+++ .-+||||.-
T Consensus 29 Ar~FFdLQDmLGfDKaS----KTveWLL~k 54 (138)
T PF03634_consen 29 ARKFFDLQDMLGFDKAS----KTVEWLLTK 54 (138)
T ss_pred HHHHHHHHHHhcCCCCC----chHHHHHHh
Confidence 46899999999999986 567999954
No 54
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.39 E-value=5.4e+02 Score=27.80 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 007356 99 EEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQ 142 (606)
Q Consensus 99 ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~ 142 (606)
.+.++.++.+...|.+....+...+-.+..+++.|......+.+
T Consensus 150 ~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~ 193 (312)
T smart00787 150 DENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQ 193 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556666555555555555555555555544433
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=26.38 E-value=4e+02 Score=28.61 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 007356 173 NDVLGRIASTAQEL 186 (606)
Q Consensus 173 n~~L~~l~~~v~~L 186 (606)
...+..|.+.+..|
T Consensus 275 ~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 275 RSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 33445555554444
No 56
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.08 E-value=6.3e+02 Score=25.61 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=16.6
Q ss_pred hhHHHHhHHHHHHHHHHHHHHHHHh
Q 007356 163 DGLSARNLQMNDVLGRIASTAQELA 187 (606)
Q Consensus 163 ~~L~~~n~~~n~~L~~l~~~v~~L~ 187 (606)
+.|..+|.+.....+.+.+..++|.
T Consensus 105 ~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 105 ETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 3466667776666777777776664
No 57
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.73 E-value=3.1e+02 Score=29.03 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007356 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (606)
.+..+..+...+|+.+..+..+.+.++.....+
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~ 71 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDEL 71 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544443333
No 58
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=25.55 E-value=4.4e+02 Score=27.42 Aligned_cols=76 Identities=18% Similarity=0.335 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHHHH
Q 007356 103 KDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIAST 182 (606)
Q Consensus 103 E~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~~~ 182 (606)
-++++.++.++.-++++++.+..+..++..|+..-... +..| ..|..+|..++..+..+-+.
T Consensus 131 ~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~--------------~erl----k~le~E~s~LeE~~~~l~~e 192 (290)
T COG4026 131 MDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEV--------------QERL----KRLEVENSRLEEMLKKLPGE 192 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHH----HHHHHHHHHHHHHHHhchhH
Confidence 34555566666666666666666666555555543333 2223 33567777777788888777
Q ss_pred HHHHhhhhcCCCCc
Q 007356 183 AQELAHYHSGDEDG 196 (606)
Q Consensus 183 v~~L~~~~s~~~~g 196 (606)
+.+|-.-.+...||
T Consensus 193 v~~L~~r~~ELe~~ 206 (290)
T COG4026 193 VYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHhccc
Confidence 77775444444444
No 59
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=25.25 E-value=9.1e+02 Score=26.32 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 007356 485 QQISGLRADLTALQSDLENSLPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKINAKLSVAVEEV 564 (606)
Q Consensus 485 ~~~~~L~~dl~~l~~~L~~~~~e~l~~~i~~L~~~~~~~~qll~~~~t~~qp~Lt~~~l~~~~~~le~ln~~l~~~l~dv 564 (606)
+.-..|+.++..|+..|. ++..+|..|...+....-...+..+.+.| .+=..-+.+||+++.....+..|+
T Consensus 79 e~Nk~L~~Ev~~Lrqkl~-----E~qGD~KlLR~~la~~r~~~~~~~~~~~~----~ere~lV~qLEk~~~q~~qLe~d~ 149 (319)
T PF09789_consen 79 EQNKKLKEEVEELRQKLN-----EAQGDIKLLREKLARQRVGDEGIGARHFP----HEREDLVEQLEKLREQIEQLERDL 149 (319)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHhchHHHHHHHHHhhhhhhccccccccc----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666665 22445555555433332222222222333 443444466666655555444444
Q ss_pred HH
Q 007356 565 TL 566 (606)
Q Consensus 565 ~~ 566 (606)
..
T Consensus 150 qs 151 (319)
T PF09789_consen 150 QS 151 (319)
T ss_pred HH
Confidence 43
No 60
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=25.09 E-value=3.3e+02 Score=27.37 Aligned_cols=100 Identities=13% Similarity=0.160 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHH--HhHHHHHHHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSA--RNLQMNDVLGR 178 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~--~n~~~n~~L~~ 178 (606)
-.++.+..++.|+.-+..+.+....+..++..|..-...+.... ..|+. .+..+...|..
T Consensus 5 ~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~------------------~~L~~~E~~~~l~~~l~~ 66 (216)
T cd07627 5 WFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETL------------------EALSSLELSKSLSDLLAA 66 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHhhcchHhHHHHHH
Confidence 34555667888888888888888777777766655433332222 11222 24556666777
Q ss_pred HHHHHHHHhhhhcCCCCccceecc-CChhhhhhchhhHHHH
Q 007356 179 IASTAQELAHYHSGDEDGIYLAYS-DFHPYLLGDSSSMKEL 218 (606)
Q Consensus 179 l~~~v~~L~~~~s~~~~gvflsq~-~Le~Yl~qee~~t~~L 218 (606)
+.+...+++..+..+...-++... ||+.|+.-+.+.-..|
T Consensus 67 ~a~~~~~~~~~~~~~a~~e~~~l~~~L~ey~r~~~Svk~~~ 107 (216)
T cd07627 67 LAEVQKRIKESLERQALQDVLTLGVTLDEYIRSIGSVRAAF 107 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776544322221233322 4555554444433333
No 61
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.01 E-value=5.8e+02 Score=23.95 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=10.2
Q ss_pred HHHHhcCCCCCCCC
Q 007356 8 ALLCELGYGGADSL 21 (606)
Q Consensus 8 e~Lk~lGyp~a~~L 21 (606)
.+|-..|||....+
T Consensus 9 ~~L~s~G~~~~~~~ 22 (151)
T PF11559_consen 9 QQLLSRGYPSDGLL 22 (151)
T ss_pred HHHHHCCCCCCCcc
Confidence 46778899996533
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.45 E-value=5.1e+02 Score=26.32 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=16.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Q 007356 100 EGLKDIREATQAYRDEAAQLQRQLR 124 (606)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~ 124 (606)
+.+..++.++.++++++..+..+.+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3566667777777777776665544
No 63
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=24.20 E-value=3e+02 Score=26.62 Aligned_cols=65 Identities=20% Similarity=0.384 Sum_probs=45.1
Q ss_pred hcccCCChhhHHHHHhhccc-ccCCCCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007356 65 QEEKLLEGEDLESAFDSISA-FSSRRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (606)
Q Consensus 65 ~sGkiLeg~aLd~aL~~i~~-~~~~~~~~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (606)
.+|. ++.+.+...|+.+.. +..+..+. -.-+..++.+.+++..|+..|+..+....++.+.|...
T Consensus 18 e~~~-~d~e~~~dtLe~i~~~~~~K~~~~------~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~y 83 (162)
T PF05565_consen 18 EEGD-LDEEAIADTLESIEDEIEEKADNI------AKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEY 83 (162)
T ss_pred hcCC-CCHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 778888888887663 44443222 22566777788899999999999888888877766654
No 64
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=24.17 E-value=3.8e+02 Score=24.68 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh
Q 007356 107 EATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRR 145 (606)
Q Consensus 107 ~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~ 145 (606)
.+++.+......|.+++..|....+.|+....+..+...
T Consensus 23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~ 61 (107)
T PF09304_consen 23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIA 61 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433
No 65
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=23.82 E-value=5.6e+02 Score=29.41 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (606)
.+..|-..+.+++++++.+.++-..+..+-+.|......+
T Consensus 60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i 99 (472)
T TIGR03752 60 TLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSI 99 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 3444445566666666666666555555555554443333
No 66
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.34 E-value=1.3e+03 Score=27.26 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHHHHHHHhh
Q 007356 279 SERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLL 340 (606)
Q Consensus 279 aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~~~i~~l~ 340 (606)
.+-+......+......-+..+..+..+-. ...++..+..+...++.++..++.++..+.
T Consensus 389 ~~~~~~~~~~~~~~~e~el~~l~~~l~~~~--~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~ 448 (650)
T TIGR03185 389 LQDAKSQLLKELRELEEELAEVDKKISTIP--SEEQIAQLLEELGEAQNELFRSEAEIEELL 448 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666654321 112344555555555555555554444443
No 67
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=22.94 E-value=8.2e+02 Score=24.95 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 007356 172 MNDVLGRIASTAQELAHYHS 191 (606)
Q Consensus 172 ~n~~L~~l~~~v~~L~~~~s 191 (606)
+...|+++++..+++..|+.
T Consensus 65 i~~~L~kF~~~l~ei~~~r~ 84 (207)
T cd07602 65 IAESLKEFGRLIETVEDERD 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788899999888888865
No 68
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.41 E-value=5.3e+02 Score=22.55 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Q 007356 109 TQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQ 142 (606)
Q Consensus 109 ~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~ 142 (606)
++.|+.-++..--+...|+..++.|......+.+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666665544433
No 69
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.40 E-value=3.2e+02 Score=27.02 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007356 171 QMNDVLGRIASTAQELA 187 (606)
Q Consensus 171 ~~n~~L~~l~~~v~~L~ 187 (606)
.+..-+.++..+..+|+
T Consensus 162 ~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 162 MLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344566666666664
No 70
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=22.17 E-value=4e+02 Score=25.61 Aligned_cols=56 Identities=30% Similarity=0.314 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHHHHHHHhhhccch
Q 007356 281 RQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIP 345 (606)
Q Consensus 281 ~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~~~i~~l~~~~lp 345 (606)
-++...+.+.+...+-|..|..... .+.|...|..+..++..++..++.+.+..-|
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t---------~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPT---------NEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5667777777788888888864442 2468999999999999999999998876444
No 71
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.11 E-value=1.9e+02 Score=26.45 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=46.4
Q ss_pred cccccccccChhhHHHHHHHHHHHHHHHHHhhhhcCcc--chhHHHHHHHHHHHHHHHHhhhccCCCCCCCCChhhHHHH
Q 007356 470 AQAGLSTYVSAPGIVQQISGLRADLTALQSDLENSLPG--DRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKEL 547 (606)
Q Consensus 470 ~q~~f~ty~~~~~L~~~~~~L~~dl~~l~~~L~~~~~e--~l~~~i~~L~~~~~~~~qll~~~~t~~qp~Lt~~~l~~~~ 547 (606)
++.+|... ..+++++..|..++..|+.++.....| .|.-....|...+....+ ..+...+.=+++.+.+.-
T Consensus 3 k~~l~~~l---~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~----~~~~~~~~~~~~~~~~g~ 75 (107)
T PF06156_consen 3 KKELFDRL---DQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ----EEEEKEEKKTKKKLGEGR 75 (107)
T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccccccccccccccchH
Confidence 34566666 889999999999999999998877665 444445555555444444 111111222333444555
Q ss_pred HHHHHHH
Q 007356 548 DEMEKIN 554 (606)
Q Consensus 548 ~~le~ln 554 (606)
.-|++|+
T Consensus 76 ~NL~~LY 82 (107)
T PF06156_consen 76 DNLARLY 82 (107)
T ss_pred HHHHHHH
Confidence 5555554
No 72
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.72 E-value=2.4e+02 Score=29.07 Aligned_cols=44 Identities=16% Similarity=0.208 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGR 144 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~ 144 (606)
...++.+++++|+++++..++-+.+.+.+...|..++..+....
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Ey 195 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEY 195 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 44445556666666666666666666666666666655554433
No 73
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=21.58 E-value=2.1e+03 Score=29.23 Aligned_cols=162 Identities=18% Similarity=0.110 Sum_probs=81.0
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHHHHHHHhhhccch
Q 007356 266 VSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLSETIP 345 (606)
Q Consensus 266 ~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~~~i~~l~~~~lp 345 (606)
..+..+|+--+.-|..+.-+-++.+.++..+|..+++...--..-+.-++++++.++.++..+|+.|+.++..+..+-=+
T Consensus 911 ~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~ 990 (1822)
T KOG4674|consen 911 LEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELEL 990 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33555666666666666666666666666666666655432222222334566666667776666666666655532100
Q ss_pred HHHHH---Hh-chhcccccccch-hhhhhhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007356 346 DLCWE---LA-QLQDTYILQGDY-DLKVMRQELYISRQKAFINHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIESEL 420 (606)
Q Consensus 346 ~l~~e---~A-qL~~~pIl~GD~-dLqiaRQ~yy~srQ~~vin~Li~Q~ar~elL~la~e~E~r~~~~~~~~L~~i~~eL 420 (606)
.-... .+ .....++|+.++ ++.-++-++-. .=..+-+.|-.+.--..-.+-=|+-|+-.|.++-.-|..+..++
T Consensus 991 ~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~-~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~ 1069 (1822)
T KOG4674|consen 991 STKGKEDKLLDLSREISSLQNELKSLLKAASQANE-QIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEF 1069 (1822)
T ss_pred cccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 00 011233344444 22222211111 11112222322222223334568888888888888887777766
Q ss_pred HhhHHHHH
Q 007356 421 QGYLSATK 428 (606)
Q Consensus 421 ~~~~~~~~ 428 (606)
-.+...+.
T Consensus 1070 ~~~~~e~~ 1077 (1822)
T KOG4674|consen 1070 AKCNDELL 1077 (1822)
T ss_pred HHHHHHHH
Confidence 66665544
No 74
>PF15456 Uds1: Up-regulated During Septation
Probab=21.49 E-value=6.8e+02 Score=23.45 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=25.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007356 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFD 131 (606)
Q Consensus 97 ~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n 131 (606)
...++++++++++..|...+..+++.+.....-+|
T Consensus 19 Ls~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~Rd 53 (124)
T PF15456_consen 19 LSFEEVEELKKELRSLDSRLEYLRRKLALESKIRD 53 (124)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788888888888888888888776555555
No 75
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.37 E-value=8.5e+02 Score=24.54 Aligned_cols=184 Identities=13% Similarity=0.171 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIA 180 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~ 180 (606)
.|+++|.+...|+.++.-+-|..+....-=+.+..-......+.... .....-..-+++.|.+++
T Consensus 3 ~~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~---------------~~~~~gd~~i~~~L~kF~ 67 (200)
T cd07637 3 TIDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDL---------------SQQCKKDEMISECLDKFG 67 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHcCCchHHHHHHHHHH
Q ss_pred HHHHHHhhhhcCCCCccceecc------CChhhhhhchhhHHHHHHHHHhhccCCcccccccccCccccccccccccccc
Q 007356 181 STAQELAHYHSGDEDGIYLAYS------DFHPYLLGDSSSMKELNQWFSKQLDSGPFRLVAEEGKSKCSWVSLGDESNIL 254 (606)
Q Consensus 181 ~~v~~L~~~~s~~~~gvflsq~------~Le~Yl~qee~~t~~Lt~y~kKqF~~G~~~~v~~e~~~~~~~~~L~D~~~~~ 254 (606)
++.+++..|+. +++.|+ ||.+|+..+-.-.+....-+ +..+..|...+.....+
T Consensus 68 ~~l~ei~~~~~-----~l~~q~e~~l~~pL~~F~k~dL~~~KE~rK~F---------------dk~se~yd~al~k~~~~ 127 (200)
T cd07637 68 DSLQEMVNYHM-----ILFDQAQRSVRQQLHSFVKEDVRKFKETKKQF---------------DKVREDLEIALVKNAQA 127 (200)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---------------HHHHHHHHHHHHHHhhc
Q ss_pred c-hhhhhhhhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHH--HHHHHHHhhhccCccccccccchhhh
Q 007356 255 V-RDLEKSHHQRVSELQRLRSVFGTSERQWVEAQVENAKQQ--AILMTLKSQVASDEAYIHLDFHSLKR 320 (606)
Q Consensus 255 ~-d~~e~~~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~--a~L~~l~~~~~~~~~~~~~d~~~L~~ 320 (606)
. ..+....|-.. +|.--+..|.-+-.+|+.+-.+...-+ +.|+.+-.-..+.....|++.+-++.
T Consensus 128 k~kk~~~l~Ea~~-~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~ 195 (200)
T cd07637 128 PRHKPHEVEEATS-TLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHE 195 (200)
T ss_pred CCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
No 76
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.35 E-value=4.8e+02 Score=30.50 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhh---hhhhHHHHhHHHHHHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSI---LDDGLSARNLQMNDVLG 177 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~---~~~~L~~~n~~~n~~L~ 177 (606)
.||.-+++...|.+-|..++.-+.-...++-.|+.+++++... -......|+- +-+.=..+|.+||++|-
T Consensus 332 eIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~-------glk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 332 EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASA-------GLKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666665555555666666666666332 2222333332 33344567778888775
Q ss_pred HH
Q 007356 178 RI 179 (606)
Q Consensus 178 ~l 179 (606)
+-
T Consensus 405 kA 406 (654)
T KOG4809|consen 405 KA 406 (654)
T ss_pred HH
Confidence 53
No 77
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=21.08 E-value=8.3e+02 Score=28.43 Aligned_cols=86 Identities=23% Similarity=0.157 Sum_probs=47.7
Q ss_pred hhhhhHhhHHHHHhhHHHHHHHhhhccchHHHHHHhchhccccccc-chhhhhhhHH-------HHHHhHHHHHHHHHHH
Q 007356 317 SLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQG-DYDLKVMRQE-------LYISRQKAFINHLINQ 388 (606)
Q Consensus 317 ~L~~~i~~l~~el~~L~~~i~~l~~~~lp~l~~e~AqL~~~pIl~G-D~dLqiaRQ~-------yy~srQ~~vin~Li~Q 388 (606)
.|+.|...+.+|.-.|+.+...|+.+++..-.|+.- +-++-|-+- |.+-|+++-. --.+||-+=+.+|++|
T Consensus 163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~-~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsq 241 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQ-LYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQ 241 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555567777777888888888888887777732 222111111 2233333321 1135555666777788
Q ss_pred HhHH--HHHHHHHHHHH
Q 007356 389 LARH--QFLRLACHLEK 403 (606)
Q Consensus 389 ~ar~--elL~la~e~E~ 403 (606)
.+.. ....++.+-|.
T Consensus 242 l~d~qkk~k~~~~Ekee 258 (596)
T KOG4360|consen 242 LVDLQKKIKYLRHEKEE 258 (596)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 7765 44444444443
No 78
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=20.91 E-value=1.3e+03 Score=26.59 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccccccchhhhhHhhHHHHHhhHHHHHHHhhh
Q 007356 262 HHQRVSELQRLRSVFGTSERQWVEAQVENAKQQAILMTLKSQVASDEAYIHLDFHSLKRKHVELVGELSNLHHKEEKLLS 341 (606)
Q Consensus 262 ~e~r~~EL~RLq~~y~~aq~q~I~a~ae~~~~~a~L~~l~~~~~~~~~~~~~d~~~L~~~i~~l~~el~~L~~~i~~l~~ 341 (606)
.+.|+..+.+|..-|..+--+++.-..+.. .-|..+.... .++..|..++..+..++..+-.++.....
T Consensus 306 le~RL~~l~~LkrKyg~s~e~l~~~~~~l~---~eL~~l~~~~--------~~le~L~~el~~l~~~l~~~a~~Ls~~R~ 374 (563)
T TIGR00634 306 IEERLAQIKRLKRKYGASVEEVLEYAEKIK---EELDQLDDSD--------ESLEALEEEVDKLEEELDKAAVALSLIRR 374 (563)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HHHHHHhCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467787888888888876666655444433 3333332111 11345555555555555544444444444
Q ss_pred ccchHHH
Q 007356 342 ETIPDLC 348 (606)
Q Consensus 342 ~~lp~l~ 348 (606)
...|.+.
T Consensus 375 ~~a~~l~ 381 (563)
T TIGR00634 375 KAAERLA 381 (563)
T ss_pred HHHHHHH
Confidence 4333333
No 79
>PRK14127 cell division protein GpsB; Provisional
Probab=20.57 E-value=3e+02 Score=25.32 Aligned_cols=48 Identities=33% Similarity=0.407 Sum_probs=35.9
Q ss_pred CCCchhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007356 88 RRDDQEAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHAS 138 (606)
Q Consensus 88 ~~~~~ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as 138 (606)
++++.++|. +=|..+-.++++|.+++.+|+.+...+..++..++...+
T Consensus 21 RGYd~~EVD---~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 21 RGYDQDEVD---KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356666552 456666678888899999999998888888887777654
No 80
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=20.41 E-value=1.5e+03 Score=27.14 Aligned_cols=46 Identities=30% Similarity=0.293 Sum_probs=25.8
Q ss_pred chhh-hhHhhHHHHHhhHHH-------HHHHhhhccchHHHHHHhchhcccccccch
Q 007356 316 HSLK-RKHVELVGELSNLHH-------KEEKLLSETIPDLCWELAQLQDTYILQGDY 364 (606)
Q Consensus 316 ~~L~-~~i~~l~~el~~L~~-------~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~ 364 (606)
..|. ++...++..|..|+. .|..+. .+|-.+|..+.-.+.++| +|+
T Consensus 155 ~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~-~~I~~l~~~Lg~~~~~~v--t~~ 208 (660)
T KOG4302|consen 155 SDLSLEKLEELREHLNELQKEKSDRLEKVLELK-EEIKSLCSVLGLDFSMTV--TDV 208 (660)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcccch--hhh
Confidence 3344 445555555555543 333444 347777777777777776 555
No 81
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=20.32 E-value=7.2e+02 Score=25.18 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=29.2
Q ss_pred hhhcchhhhhhhhHHHHhHHHHHHHHHHHHHHHHHh
Q 007356 152 STVNGHLSILDDGLSARNLQMNDVLGRIASTAQELA 187 (606)
Q Consensus 152 ~~~~~~lk~~~~~L~~~n~~~n~~L~~l~~~v~~L~ 187 (606)
-++...+...-..+.++|..+...|..+...++.|-
T Consensus 148 ~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~ 183 (206)
T PF14988_consen 148 LAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLE 183 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666667899999999999999999988874
No 82
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=20.27 E-value=9.1e+02 Score=24.46 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=61.0
Q ss_pred ccchHHHHHHhchhcccccccchhhhhhhHHHHHHhHHHH----HHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007356 342 ETIPDLCWELAQLQDTYILQGDYDLKVMRQELYISRQKAF----INHLINQLARHQFLRLACHLEKRNMLAAYSLLKVIE 417 (606)
Q Consensus 342 ~~lp~l~~e~AqL~~~pIl~GD~dLqiaRQ~yy~srQ~~v----in~Li~Q~ar~elL~la~e~E~r~~~~~~~~L~~i~ 417 (606)
.++-++-++....-+.+-...-|.-+++-.+-....|+.. ..+|..--+||.-+-.=++-|.|+|.+....=..+.
T Consensus 57 dp~~ALqRD~~~~~~~~~~~~v~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE~rhrr~i~eLe~EKrkh~~~~aqgDD~t 136 (192)
T PF09727_consen 57 DPFLALQRDSEAAGGEKEEEDVYENPLAELEKLMEHQKKMQRRMLEQLAAAEKRHRRTIQELEEEKRKHAEDMAQGDDFT 136 (192)
T ss_pred cHHHHHHhHHHhcCCCCccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 3444444444433333333333777777778777777765 555555577887777788889999998887777777
Q ss_pred HHHHhhHHHHHHHhhh
Q 007356 418 SELQGYLSATKSRVGR 433 (606)
Q Consensus 418 ~eL~~~~~~~~~R~~~ 433 (606)
.-|.+....+.+-++.
T Consensus 137 ~lLEkEReRLkq~lE~ 152 (192)
T PF09727_consen 137 NLLEKERERLKQQLEQ 152 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777766654
No 83
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=20.18 E-value=9.1e+02 Score=24.45 Aligned_cols=111 Identities=11% Similarity=0.177 Sum_probs=53.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcchhhhhhhhHHHHhHHHHHHHHHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGHLSILDDGLSARNLQMNDVLGRIA 180 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~lk~~~~~L~~~n~~~n~~L~~l~ 180 (606)
.+++.|.+++.|+..+..|.|..+.+..-...+..-...-.+. |..... ....+..+...|.+++
T Consensus 3 ~i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~--------------L~~f~~-~~~~D~~i~~~l~kFs 67 (200)
T cd07639 3 AIEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDG--------------LCDLAH-HGPKDPMMAECLEKFS 67 (200)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhc-cCCCCchhHHHHHHHH
Confidence 4555666666666666666666555443222222211111111 111110 0122334777788888
Q ss_pred HHHHHHhhhhcCC-CCccceeccCChhhhhhchhhHHHHHHHHHhhccCCc
Q 007356 181 STAQELAHYHSGD-EDGIYLAYSDFHPYLLGDSSSMKELNQWFSKQLDSGP 230 (606)
Q Consensus 181 ~~v~~L~~~~s~~-~~gvflsq~~Le~Yl~qee~~t~~Lt~y~kKqF~~G~ 230 (606)
+..+++..|+..- .+--.+--.||+.|+..+-.-.+. .||+|+...
T Consensus 68 ~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl~~vKe----~kK~FdK~s 114 (200)
T cd07639 68 DGLNHILDSHAELLEATQFSFKQQLQLLVKEDLRGFRD----ARKEFERGA 114 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HhhhHhhcc
Confidence 8888887665310 000112234666666665544443 346776653
Done!