Query 007356
Match_columns 606
No_of_seqs 82 out of 84
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:44:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ve7_A Kinetochore protein HEC 75.0 3.6 0.00012 42.6 5.9 37 5-46 72-114 (315)
2 3i5g_C Myosin catalytic light 54.2 13 0.00046 33.4 4.8 77 3-83 30-115 (159)
3 3mq9_A Bone marrow stromal ant 47.9 1.1E+02 0.0037 32.4 11.4 70 116-186 399-469 (471)
4 2jee_A YIIU; FTSZ, septum, coi 47.8 1.2E+02 0.0042 25.3 9.2 17 102-118 29-45 (81)
5 3q8t_A Beclin-1; autophagy, AT 47.7 1.3E+02 0.0045 25.6 10.1 44 97-140 8-51 (96)
6 3bas_A Myosin heavy chain, str 39.6 1.2E+02 0.0042 25.3 8.1 36 101-136 22-57 (89)
7 3iee_A Putative exported prote 38.8 99 0.0034 31.3 8.5 99 474-595 114-212 (270)
8 2jee_A YIIU; FTSZ, septum, coi 36.6 1.9E+02 0.0064 24.2 9.1 32 109-140 8-39 (81)
9 3i5g_B Myosin regulatory light 35.3 13 0.00044 33.3 1.4 76 2-83 34-115 (153)
10 2w83_C C-JUN-amino-terminal ki 34.1 1.4E+02 0.0049 24.6 7.2 48 101-148 10-57 (77)
11 1go4_E MAD1 (mitotic arrest de 33.3 24 0.00081 30.7 2.6 40 314-365 13-52 (100)
12 3rh3_A Uncharacterized DUF3829 31.0 1.5E+02 0.0051 29.9 8.3 97 475-594 107-203 (264)
13 2dfs_A Myosin-5A; myosin-V, in 30.6 2.4E+02 0.0083 33.8 11.6 18 164-181 1027-1044(1080)
14 1i84_S Smooth muscle myosin he 30.5 1.2E+02 0.0041 36.6 9.1 20 418-437 1147-1166(1184)
15 3hnw_A Uncharacterized protein 28.9 1.9E+02 0.0065 26.2 8.1 29 108-136 76-104 (138)
16 2eqb_B RAB guanine nucleotide 27.8 2E+02 0.0067 24.8 7.4 20 102-121 7-26 (97)
17 2yy0_A C-MYC-binding protein; 27.0 93 0.0032 23.8 4.8 27 108-134 20-46 (53)
18 3na7_A HP0958; flagellar bioge 25.5 3.9E+02 0.013 26.0 10.5 6 174-179 157-162 (256)
19 3tnu_B Keratin, type II cytosk 25.1 3.5E+02 0.012 23.7 9.6 39 98-136 34-72 (129)
20 2l5g_A GPS2 protein, G protein 24.9 1.2E+02 0.004 21.8 4.5 29 100-128 8-36 (38)
21 2yy0_A C-MYC-binding protein; 24.9 1.1E+02 0.0038 23.4 4.9 32 101-132 20-51 (53)
22 3vkg_A Dynein heavy chain, cyt 24.6 2.9E+02 0.01 37.2 11.6 35 152-186 2066-2103(3245)
23 3hnw_A Uncharacterized protein 23.9 2.1E+02 0.0071 25.9 7.4 48 93-140 68-115 (138)
24 3tnu_A Keratin, type I cytoske 23.8 3.5E+02 0.012 23.8 8.9 39 98-136 36-74 (131)
25 1ic2_A Tropomyosin alpha chain 23.2 2.7E+02 0.0092 22.6 7.3 57 98-157 25-81 (81)
26 3vmx_A Voltage-gated hydrogen 23.0 1.8E+02 0.0062 22.0 5.5 38 402-439 5-42 (48)
27 2ovk_C Myosin catalytic light 22.9 59 0.002 28.0 3.5 77 3-83 30-115 (159)
28 1wdc_B Scallop myosin; calcium 20.0 48 0.0016 28.5 2.2 75 2-82 36-116 (156)
No 1
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=75.03 E-value=3.6 Score=42.56 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=27.2
Q ss_pred hHHHHHHhcCCCCCCCCCCCCCcccC--CCC----CchhHHHHHHccC
Q 007356 5 RLCALLCELGYGGADSLDPDSFEWPF--QYD----DARPILDWICSSL 46 (606)
Q Consensus 5 ~f~e~Lk~lGyp~a~~L~~edFdWlf--~~~----e~~~FL~Wfc~nV 46 (606)
++..+||.||||-. ++. .||. ..| .+-..|.|++.-+
T Consensus 72 ev~~~lK~L~YP~~--isK---S~L~a~g~pHsWp~~Lg~L~WLvel~ 114 (315)
T 2ve7_A 72 EVPRIFKDLGYPFA--LSK---SSMYTVGAPHTWPHIVAALVWLIDCI 114 (315)
T ss_dssp HHHHHHHHTTCSSC--CCH---HHHHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCce--eCH---HHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 57789999999995 555 4554 333 3677899998755
No 2
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=54.18 E-value=13 Score=33.41 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=56.3
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCcccCC-------CCCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CCChh
Q 007356 3 GARLCALLCELGYGGADSLDPDSFEWPFQ-------YDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGE 73 (606)
Q Consensus 3 g~~f~e~Lk~lGyp~a~~L~~edFdWlf~-------~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~fe~L~~sGk-iLeg~ 73 (606)
-.+|..+|+.||+.-+. +.+.-++. .-++..|+.++.......+.-+.+++ .+|..+-..|. .++-+
T Consensus 30 ~~El~~~lr~lG~~~t~----~el~~~~~~d~~~~g~i~f~eFl~~~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~ 105 (159)
T 3i5g_C 30 AAKVGDLLRCLGMNPTE----AQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSA 105 (159)
T ss_dssp GGGHHHHHHHTTCCCCH----HHHHTTTCCSSTTSCEECHHHHHHHHHHHTTCCTTCCHHHHHHHHHHHCTTSSSEECHH
T ss_pred HHHHHHHHHHcCCCCCH----HHHHHHHcccccCCCcccHHHHHHHHHHhhcccccchHHHHHHHHHHHhcCCCCcCcHH
Confidence 46899999999986432 12222221 12678899999887776667777776 58999988888 78999
Q ss_pred hHHHHHhhcc
Q 007356 74 DLESAFDSIS 83 (606)
Q Consensus 74 aLd~aL~~i~ 83 (606)
+|..++.++.
T Consensus 106 el~~~l~~~g 115 (159)
T 3i5g_C 106 EIRNVLKMLG 115 (159)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 9999998765
No 3
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=47.95 E-value=1.1e+02 Score=32.39 Aligned_cols=70 Identities=20% Similarity=0.192 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhh-hhhcchhhhhhhhHHHHhHHHHHHHHHHHHHHHHH
Q 007356 116 AAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAAT-STVNGHLSILDDGLSARNLQMNDVLGRIASTAQEL 186 (606)
Q Consensus 116 ~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e-~~~~~~lk~~~~~L~~~n~~~n~~L~~l~~~v~~L 186 (606)
...||+++...+..+-.+..+|++-.+..-.+-+.- .+.....+..++ +..+.++.|..|+.....++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEE-LEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 344777777777777777777777655544442222 233333444433 7788889999999998888776
No 4
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=47.77 E-value=1.2e+02 Score=25.28 Aligned_cols=17 Identities=12% Similarity=0.444 Sum_probs=6.4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 007356 102 LKDIREATQAYRDEAAQ 118 (606)
Q Consensus 102 lE~l~~~~e~Le~e~~~ 118 (606)
++.|+..-..|..+.++
T Consensus 29 ieELKekN~~L~~e~~e 45 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 5
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=47.67 E-value=1.3e+02 Score=25.57 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=24.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007356 97 GSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 97 ~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (606)
..+..|.+++.+-..|-.++..+++....+...+..++..+..+
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34445556655666666666666666665555555555544433
No 6
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.59 E-value=1.2e+02 Score=25.25 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (606)
.++.+++.+++-+....+++.....+....|.|..+
T Consensus 22 el~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 22 QMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555555555555555544
No 7
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=38.82 E-value=99 Score=31.28 Aligned_cols=99 Identities=11% Similarity=0.194 Sum_probs=74.2
Q ss_pred cccccChhhHHHHHHHHHHHHHHHHHhhhhcCccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCChhhHHHHHHHHHH
Q 007356 474 LSTYVSAPGIVQQISGLRADLTALQSDLENSLPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKI 553 (606)
Q Consensus 474 f~ty~~~~~L~~~~~~L~~dl~~l~~~L~~~~~e~l~~~i~~L~~~~~~~~qll~~~~t~~qp~Lt~~~l~~~~~~le~l 553 (606)
+..|+.++... .+.+|......++.+...+ ++.-.+.|.-.-.+-+..+ |-+-||-++|-.+.++
T Consensus 114 ~~sYlkaed~k-kgkKL~~~n~~l~~~~~e~----k~~ifd~Lsp~aeqAE~~l----------L~DhPLKeqIla~kkm 178 (270)
T 3iee_A 114 YLSYLKKKDVT-NAKKLLDVNYQLSTQMSEY----KQNIFDILSPFTEQAELVL----------LVDNPLKAQIMSVRKM 178 (270)
T ss_dssp HHHHHHTTCHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH----------TTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHH----------HccCchHHHHHHHHHH
Confidence 34566666655 7777777766666666653 3556677766678888888 9999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccCchHHHHHHHHHHhccc
Q 007356 554 NAKLSVAVEEVTLEHCKKNEANFWCACRLLNITLRRLAFKGG 595 (606)
Q Consensus 554 n~~l~~~l~dv~~~r~~~~Ev~Ff~~p~~L~~~Ve~le~q~~ 595 (606)
...+++|+.++-+++.. |..+|...+-+||.+..
T Consensus 179 ~~~~q~ii~l~~rk~~~--------D~~~l~~~~~eLek~l~ 212 (270)
T 3iee_A 179 SSTMQSILNLYARKHRM--------DGPRIDLKVAELTKQLD 212 (270)
T ss_dssp HHHHHHHHHHHTCTTSC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHHHH
Confidence 99999999999887633 66667777777766543
No 8
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.57 E-value=1.9e+02 Score=24.17 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007356 109 TQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 109 ~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (606)
+++|+..++.+-.+...++-..+.|......+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 9
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=35.31 E-value=13 Score=33.29 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=52.1
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCCCCcccC----CCCCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007356 2 SGARLCALLCELGYGGADSLDPDSFEWPF----QYDDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (606)
Q Consensus 2 ~g~~f~e~Lk~lGyp~a~~L~~edFdWlf----~~~e~~~FL~Wfc~nV~~~NVLS~~EL-~~fe~L~~sGk-iLeg~aL 75 (606)
+-.+|...|+.+|++.+.. .+.-++ ..-++..|+.+++..+...+ +++++ .+|..+-..|. .++.++|
T Consensus 34 ~~~El~~~l~~lg~~~~~~----~~~~~~~~~~~~i~f~ef~~~~~~~~~~~~--~~~~l~~aF~~fD~d~~G~I~~~el 107 (153)
T 3i5g_B 34 GMEDLKDMFSSLGRVPPDD----ELNAMLKECPGQLNFTAFLTLFGEKVSGTD--PEDALRNAFSMFDEDGQGFIPEDYL 107 (153)
T ss_dssp CHHHHHHHHHHTTSCCCHH----HHHHHHHTSSSCCCSHHHHHTTTTTTTTCC--CHHHHHHHHHTTCSSCSSCCCHHHH
T ss_pred cHHHHHHHHHHcCCCccHH----HHHHHHHhccCCccHHHHHHHHHhhhcccc--cHHHHHHHHhccccCCCCeEeHHHH
Confidence 3468889999999877542 222222 23467888888887766543 44554 47888878888 7888888
Q ss_pred HHHHhhcc
Q 007356 76 ESAFDSIS 83 (606)
Q Consensus 76 d~aL~~i~ 83 (606)
..++.++.
T Consensus 108 ~~~l~~~g 115 (153)
T 3i5g_B 108 KDLLENMG 115 (153)
T ss_dssp HHHHHSSS
T ss_pred HHHHHHcC
Confidence 88887664
No 10
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=34.14 E-value=1.4e+02 Score=24.63 Aligned_cols=48 Identities=15% Similarity=0.097 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhh
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARV 148 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~ 148 (606)
++|.|-.+-..|-+-...+.-.++.|+.+.+.|+..-..++....++.
T Consensus 10 evEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 10 EVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445554454455555555555566677777777777666655544443
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=33.27 E-value=24 Score=30.73 Aligned_cols=40 Identities=45% Similarity=0.570 Sum_probs=0.0
Q ss_pred ccchhhhhHhhHHHHHhhHHHHHHHhhhccchHHHHHHhchhcccccccchh
Q 007356 314 DFHSLKRKHVELVGELSNLHHKEEKLLSETIPDLCWELAQLQDTYILQGDYD 365 (606)
Q Consensus 314 d~~~L~~~i~~l~~el~~L~~~i~~l~~~~lp~l~~e~AqL~~~pIl~GD~d 365 (606)
.+.+|+.+|.+|..|...|+.+++.+- ++|.... ++||||
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE-----------~~Le~~~-l~Gd~~ 52 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLE-----------AQLERRA-LQGDYD 52 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHSS-CCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHh-hccccC
No 12
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=31.03 E-value=1.5e+02 Score=29.91 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=65.8
Q ss_pred ccccChhhHHHHHHHHHHHHHHHHHhhhhcCccchhHHHHHHHHHHHHHHHHhhhccCCCCCCCCChhhHHHHHHHHHHH
Q 007356 475 STYVSAPGIVQQISGLRADLTALQSDLENSLPGDRNRCINELCTLIQSLQQLLFASSTTAQPILTPRPLMKELDEMEKIN 554 (606)
Q Consensus 475 ~ty~~~~~L~~~~~~L~~dl~~l~~~L~~~~~e~l~~~i~~L~~~~~~~~qll~~~~t~~qp~Lt~~~l~~~~~~le~ln 554 (606)
.+|+.++... .+.+|...-..++.+.. |-+..-.+.|.-.-.+-+.++ |-+-||-++|--+.++.
T Consensus 107 ~SYlk~ed~~-~~akL~~~~~~l~~em~----e~k~~ifd~lsp~aeqAE~vl----------L~DhPLKeqIla~kkm~ 171 (264)
T 3rh3_A 107 LAYKKSKDTA-KTAQLLDENYKLSVELS----EYKQVIFDILSPLTEQAESEL----------LADEPLKDQIMAMRKMS 171 (264)
T ss_dssp HHHHHTTCHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH----------TTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhHH-HHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHH----------HccCchHHHHHHHHHHH
Confidence 3455555543 45555544444433333 433566677776688888888 99999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccCchHHHHHHHHHHhcc
Q 007356 555 AKLSVAVEEVTLEHCKKNEANFWCACRLLNITLRRLAFKG 594 (606)
Q Consensus 555 ~~l~~~l~dv~~~r~~~~Ev~Ff~~p~~L~~~Ve~le~q~ 594 (606)
..+.+++..+-+++.. |..+|..-+.+|+.|.
T Consensus 172 ~~~~~~~~l~~rq~~~--------D~~rld~~~~el~~qL 203 (264)
T 3rh3_A 172 GTVQSIMNLYSRKHAM--------DGVRIDLKMAELEKEL 203 (264)
T ss_dssp HHHHHHHHHHTCTTCC--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCC--------cHHHHHHHHHHHHHHH
Confidence 9999999999888643 5555555555555543
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.56 E-value=2.4e+02 Score=33.78 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=8.7
Q ss_pred hHHHHhHHHHHHHHHHHH
Q 007356 164 GLSARNLQMNDVLGRIAS 181 (606)
Q Consensus 164 ~L~~~n~~~n~~L~~l~~ 181 (606)
.|..+|.++..++.++..
T Consensus 1027 ~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555554444443
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=30.54 E-value=1.2e+02 Score=36.56 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhhhhHHh
Q 007356 418 SELQGYLSATKSRVGRCLAL 437 (606)
Q Consensus 418 ~eL~~~~~~~~~R~~~~~~~ 437 (606)
..|......+..+++.+...
T Consensus 1147 ~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S 1147 RDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHhhH
Confidence 34444555555555544433
No 15
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.93 E-value=1.9e+02 Score=26.17 Aligned_cols=29 Identities=3% Similarity=0.082 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007356 108 ATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (606)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (606)
..+.|+.++.++.+....+.+.+..++..
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k 104 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIK 104 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433333
No 16
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.77 E-value=2e+02 Score=24.84 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007356 102 LKDIREATQAYRDEAAQLQR 121 (606)
Q Consensus 102 lE~l~~~~e~Le~e~~~lqk 121 (606)
++++++.+..|+.++.....
T Consensus 7 ~e~lre~l~~le~~~~~~~~ 26 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDD 26 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhH
Confidence 34444444444444444333
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.97 E-value=93 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 007356 108 ATQAYRDEAAQLQRQLRHLQCQFDMLT 134 (606)
Q Consensus 108 ~~e~Le~e~~~lqk~~~~l~~~~n~L~ 134 (606)
+.++|+.|..+|+.....|..++.+|.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555444443
No 18
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.46 E-value=3.9e+02 Score=26.02 Aligned_cols=6 Identities=17% Similarity=0.097 Sum_probs=2.2
Q ss_pred HHHHHH
Q 007356 174 DVLGRI 179 (606)
Q Consensus 174 ~~L~~l 179 (606)
..+..+
T Consensus 157 ~e~~~l 162 (256)
T 3na7_A 157 ETQQII 162 (256)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 19
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.12 E-value=3.5e+02 Score=23.74 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=26.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007356 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (606)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (606)
+.+++-+++.-+..|+.+++.++.++..|...+...+..
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777777666555443
No 20
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.95 E-value=1.2e+02 Score=21.78 Aligned_cols=29 Identities=17% Similarity=0.224 Sum_probs=23.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007356 100 EGLKDIREATQAYRDEAAQLQRQLRHLQC 128 (606)
Q Consensus 100 e~lE~l~~~~e~Le~e~~~lqk~~~~l~~ 128 (606)
+.+++.++.+..|+..++.|++-++.+=.
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888899999999999988876543
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=24.94 E-value=1.1e+02 Score=23.35 Aligned_cols=32 Identities=6% Similarity=0.193 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007356 101 GLKDIREATQAYRDEAAQLQRQLRHLQCQFDM 132 (606)
Q Consensus 101 ~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~ 132 (606)
.+|.|+.+...|+..+..|+++..-+..++++
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777888888888888888888777777664
No 22
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=24.65 E-value=2.9e+02 Score=37.16 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=18.3
Q ss_pred hhhcchhhhhhh---hHHHHhHHHHHHHHHHHHHHHHH
Q 007356 152 STVNGHLSILDD---GLSARNLQMNDVLGRIASTAQEL 186 (606)
Q Consensus 152 ~~~~~~lk~~~~---~L~~~n~~~n~~L~~l~~~v~~L 186 (606)
+.+..+|..|.. .|+.+..+=......+......|
T Consensus 2066 ~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2066 SKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhc
Confidence 455555555543 45666655555555555444443
No 23
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.94 E-value=2.1e+02 Score=25.92 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=28.5
Q ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007356 93 EAVFGSEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTL 140 (606)
Q Consensus 93 ed~~~~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l 140 (606)
++.+...+..+.++..++.+.+|+.+++..+...+-+.+.+......+
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666666666666666555543333
No 24
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.85 E-value=3.5e+02 Score=23.82 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=24.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 007356 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAH 136 (606)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~ 136 (606)
+.+++-+++.-+..|+.+++.++.++..|...+...+..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344666777777888888888877777777766555543
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=23.18 E-value=2.7e+02 Score=22.59 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=0.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhHhhhhhhhhcch
Q 007356 98 SEEGLKDIREATQAYRDEAAQLQRQLRHLQCQFDMLTAHASTLMQGRRARVAATSTVNGH 157 (606)
Q Consensus 98 ~ee~lE~l~~~~e~Le~e~~~lqk~~~~l~~~~n~L~~~as~l~~~~~~l~~~e~~~~~~ 157 (606)
++..+++.+......+.++..|++....+...+++.+...... ...+..++..+...
T Consensus 25 ~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a---~~kLeeaek~~~~~ 81 (81)
T 1ic2_A 25 AEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDA---QEKLELADKKATDC 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhcC
No 26
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.98 E-value=1.8e+02 Score=21.96 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=32.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHhhHHHHHHHhhhhHHhhh
Q 007356 402 EKRNMLAAYSLLKVIESELQGYLSATKSRVGRCLALIE 439 (606)
Q Consensus 402 E~r~~~~~~~~L~~i~~eL~~~~~~~~~R~~~~~~~~q 439 (606)
-++++...+..|..=+++|+..++...|++++++.+-.
T Consensus 5 ~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLk 42 (48)
T 3vmx_A 5 QILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLK 42 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 35678888888988889999999999999999888743
No 27
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=22.86 E-value=59 Score=27.97 Aligned_cols=77 Identities=16% Similarity=0.159 Sum_probs=48.6
Q ss_pred hhhHHHHHHhcCCCCCCCCCCCCCcccCCC-------CCchhHHHHHHccCCCCCCCCHHHHh-HHHHHHhccc-CCChh
Q 007356 3 GARLCALLCELGYGGADSLDPDSFEWPFQY-------DDARPILDWICSSLRPSNVLSLSELS-QFEQFLQEEK-LLEGE 73 (606)
Q Consensus 3 g~~f~e~Lk~lGyp~a~~L~~edFdWlf~~-------~e~~~FL~Wfc~nV~~~NVLS~~EL~-~fe~L~~sGk-iLeg~ 73 (606)
-.+|...|+.+|++.+ .+.+..+|.. -.+..|+.++.........-..+++. +|..+-..|. .++.+
T Consensus 30 ~~el~~~l~~lg~~~~----~~~~~~l~~~~d~~~g~i~~~eF~~~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~ 105 (159)
T 2ovk_C 30 AAKVGDLLRCLGMNPT----EAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSA 105 (159)
T ss_dssp GGGHHHHHHHTTCCCC----HHHHHHTTCCSSTTSCEEEHHHHHHHHHHHTTCSTTCCHHHHHHHHHHTCTTSSSEECHH
T ss_pred HHHHHHHHHHcCCCCC----HHHHHHHHHHhcCCCCeEcHHHHHHHHHHHhhccCCCcHHHHHHHHHHHCCCCCCcCcHH
Confidence 4789999999998653 3444555521 24677888885433333333444443 6777767776 67777
Q ss_pred hHHHHHhhcc
Q 007356 74 DLESAFDSIS 83 (606)
Q Consensus 74 aLd~aL~~i~ 83 (606)
+|..++..+.
T Consensus 106 El~~~l~~~g 115 (159)
T 2ovk_C 106 EIRNVLKMLG 115 (159)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHHhC
Confidence 7777777653
No 28
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=20.04 E-value=48 Score=28.50 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=44.6
Q ss_pred ChhhHHHHHHhcCCCCCCCCCCCCCcccCCC----CCchhHHHHHHccCCCCCCCCHHHH-hHHHHHHhccc-CCChhhH
Q 007356 2 SGARLCALLCELGYGGADSLDPDSFEWPFQY----DDARPILDWICSSLRPSNVLSLSEL-SQFEQFLQEEK-LLEGEDL 75 (606)
Q Consensus 2 ~g~~f~e~Lk~lGyp~a~~L~~edFdWlf~~----~e~~~FL~Wfc~nV~~~NVLS~~EL-~~fe~L~~sGk-iLeg~aL 75 (606)
+-.+|...|+.+|++.+ .+.+..+|.+ -.+..|+.++...+...+ +.+++ .+|..+-..|. .++.+++
T Consensus 36 ~~~el~~~l~~~g~~~~----~~~~~~~~~~~~g~i~~~eF~~~~~~~~~~~~--~~~~l~~~F~~~D~d~~G~I~~~el 109 (156)
T 1wdc_B 36 SKEDIKAISEQLGRAPD----DKELTAMLKEAPGPLNFTMFLSIFSDKLSGTD--SEETIRNAFAMFDEQETKKLNIEYI 109 (156)
T ss_dssp CHHHHHHHHHHHSSCCC----HHHHHHHHTTSSSCCCHHHHHHHHHHHTCSCC--CHHHHHHHHHTTCTTCCSCEEHHHH
T ss_pred cHHHHHHHHHHhCCCCC----HHHHHHHHHhCCCcCcHHHHHHHHHHHhcCCC--hHHHHHHHHHHHCcCCCCccCHHHH
Confidence 34688899999987643 3445555522 367777777775443221 23333 34666655555 5666666
Q ss_pred HHHHhhc
Q 007356 76 ESAFDSI 82 (606)
Q Consensus 76 d~aL~~i 82 (606)
..++..+
T Consensus 110 ~~~l~~~ 116 (156)
T 1wdc_B 110 KDLLENM 116 (156)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 6666654
Done!