BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007357
(606 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 915 bits (2366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/531 (82%), Positives = 480/531 (90%), Gaps = 1/531 (0%)
Query: 77 QSTAFKSFGAQRKDKKEFQFD-SKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQK 135
Q AFK+FG+ +K+KKE D S++Q ++ + DA+FLNAVVKVYCTHTAPDYSLPWQK
Sbjct: 9 QKMAFKAFGSPKKEKKESLSDFSRDQQTDPAKIHDASFLNAVVKVYCTHTAPDYSLPWQK 68
Query: 136 QRQYTSTGSAFMIGDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSV 195
QRQ+TSTGSAFMIGDGKLLTNAHCVEH TQVKVKRRGDD KYVAKVL RGVDCDIALLSV
Sbjct: 69 QRQFTSTGSAFMIGDGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSV 128
Query: 196 ESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSELLG 255
ESE+FWK AEPL LGHLPRLQD+VTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSS+LLG
Sbjct: 129 ESEDFWKGAEPLRLGHLPRLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLG 188
Query: 256 IQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVENIGYVIPTTVVSHFLSDYERNGK 315
IQIDAAINPGNSGGPAFND+GECIGVAFQVYRSEE ENIGYVIPTTVVSHFL+DYERNGK
Sbjct: 189 IQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYERNGK 248
Query: 316 YTGFPCLGVLLQKLENPALRTCLKVPSNEGVLVRRVEPTSDANNILKEGDVIVSFDDVCV 375
YTG+PCLGVLLQKLENPALR CLKVP+NEGVLVRRVEPTSDA+ +LKEGDVIVSFDD+ V
Sbjct: 249 YTGYPCLGVLLQKLENPALRECLKVPTNEGVLVRRVEPTSDASKVLKEGDVIVSFDDLHV 308
Query: 376 GSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPRVHLVPYHIDGG 435
G EGTVPFRS+ERIAFRYLISQKFAGD+AE+GIIRAG KV+VVL PRVHLVPYHIDGG
Sbjct: 309 GCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVLRPRVHLVPYHIDGG 368
Query: 436 QPSYLIIAGLVFTPLSEPLIEEECDDSIGLKLLAKARYSLARFEGEQMVILSQVLANEVS 495
QPSY+I+AGLVFTPLSEPLIEEEC+D+IGLKLL KARYS+ARF GEQ+VILSQVLANEV+
Sbjct: 369 QPSYIIVAGLVFTPLSEPLIEEECEDTIGLKLLTKARYSVARFRGEQIVILSQVLANEVN 428
Query: 496 IGYEDMSNQQVLKFNGTRIKNIHHLAHLVDSCKDKYLVFEFEDNYXXXXXXXXXXXXXXC 555
IGYEDM+NQQVLKFNG I+NIHHLAHL+D CKDKYLVFEFEDNY C
Sbjct: 429 IGYEDMNNQQVLKFNGIPIRNIHHLAHLIDMCKDKYLVFEFEDNYVAVLEREASNSASLC 488
Query: 556 ILKDYGIPSERSSDLLEPYVDPLGGNQAINQDSGDSPVSDLEIGFDGLKWA 606
ILKDYGIPSERS+DLLEPYVDP+ QA++Q GDSPVS+LEIGFDGL WA
Sbjct: 489 ILKDYGIPSERSADLLEPYVDPIDDTQALDQGIGDSPVSNLEIGFDGLVWA 539
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 130/261 (49%), Gaps = 22/261 (8%)
Query: 127 PDYSLPWQKQRQYTSTGSAFMI--GDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLAR 184
P +P +K R++ S GS +I +G ++TN H + + + + V + D + A+++
Sbjct: 64 PQSRMP-EKGRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQ-DGRRLKARLIGG 121
Query: 185 GVDCDIALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLG----GDTISVTKGVV 238
+ D+A+L +++ K+ + L +G +L+ D V +G P G G++ S T G+V
Sbjct: 122 DSETDLAVLKIDA----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIV 177
Query: 239 SRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVE-NIGYV 297
S ++ + E IQ DAAINPGNSGG N KGE IG+ + IG+
Sbjct: 178 SALKRSDLNIEGVENF-IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFA 236
Query: 298 IPTTVVSHFLSDYERNGK-YTGFPCLGVLLQKLENPALRTCLKVPSN-EGVLVRRVEPTS 355
IP +V + G + G +G+ +Q L P L + P + +G LV +V P S
Sbjct: 237 IPINMVKDVAQQIIKFGSIHRGL--MGIFVQHL-TPELAQAMGYPEDFQGALVSQVNPNS 293
Query: 356 DANNI-LKEGDVIVSFDDVCV 375
A LK GD+I +D +
Sbjct: 294 PAELAGLKAGDIITQINDTKI 314
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/261 (30%), Positives = 130/261 (49%), Gaps = 22/261 (8%)
Query: 127 PDYSLPWQKQRQYTSTGSAFMI--GDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLAR 184
P +P +K R++ S GS +I +G ++TN H + + + + V + D + A+++
Sbjct: 64 PQSRMP-EKGRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQ-DGRRLKARLIGG 121
Query: 185 GVDCDIALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLG----GDTISVTKGVV 238
+ D+A+L +++ K+ + L +G +L+ D V +G P G G++ S T G+V
Sbjct: 122 DSETDLAVLKIDA----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIV 177
Query: 239 SRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVE-NIGYV 297
S ++ + E IQ DAAINPGNSGG N KGE IG+ + IG+
Sbjct: 178 SALKRSDLNIEGVENF-IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFA 236
Query: 298 IPTTVVSHFLSDYERNGK-YTGFPCLGVLLQKLENPALRTCLKVPSN-EGVLVRRVEPTS 355
IP +V + G + G +G+ +Q L P L + P + +G LV +V P S
Sbjct: 237 IPINMVKDVAQQIIKFGSIHRGL--MGIFVQHL-TPELAQAMGYPEDFQGALVSQVNPNS 293
Query: 356 DANNI-LKEGDVIVSFDDVCV 375
A LK GD+I +D +
Sbjct: 294 PAELAGLKAGDIITQINDTKI 314
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/261 (29%), Positives = 130/261 (49%), Gaps = 22/261 (8%)
Query: 127 PDYSLPWQKQRQYTSTGSAFMI--GDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLAR 184
P +P +K R++ S GS +I +G ++TN H + + + + V + D + A+++
Sbjct: 64 PQSRMP-EKGRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQ-DGRRLKARLIGG 121
Query: 185 GVDCDIALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLG----GDTISVTKGVV 238
+ D+A+L +++ K+ + L +G +L+ D V +G P G G++ S T G+V
Sbjct: 122 DSETDLAVLKIDA----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIV 177
Query: 239 SRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVE-NIGYV 297
S ++ + E IQ DAAINPGN+GG N KGE IG+ + IG+
Sbjct: 178 SALKRSDLNIEGVENF-IQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFA 236
Query: 298 IPTTVVSHFLSDYERNGK-YTGFPCLGVLLQKLENPALRTCLKVPSN-EGVLVRRVEPTS 355
IP +V + G + G +G+ +Q L P L + P + +G LV +V P S
Sbjct: 237 IPINMVKDVAQQIIKFGSIHRGL--MGIFVQHL-TPELAQAMGYPEDFQGALVSQVNPNS 293
Query: 356 DANNI-LKEGDVIVSFDDVCV 375
A LK GD+I +D +
Sbjct: 294 PAELAGLKAGDIITQINDTKI 314
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 32/316 (10%)
Query: 121 YCTHTAPDYSLPW----------QKQRQYTSTGSAFMIG--DGKLLTNAHCVEHYTQVKV 168
+C +P S P+ +Q+++ + GS +I G ++TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 169 KRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG- 227
+ D K+ AK++ + DIAL+ +++ + A + R+ D +G P G
Sbjct: 116 QLS-DGRKFDAKMVGKDPRSDIALIQIQNPKNLT-AIKMADSDALRVGDYTVAIGNPFGL 173
Query: 228 GDTISVTKGVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYR 287
G+T VT G+VS + + + E IQ DAAIN GNSGG N GE IG+ +
Sbjct: 174 GET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNSGGALVNLNGELIGINTAILA 230
Query: 288 SEEVE-NIGYVIPTTVVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSNEGV 346
+ IG+ IP+ +V + S G+ LG++ +L N L +KV + G
Sbjct: 231 PDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGE-LGIMGTEL-NSELAKAMKVDAQRGA 288
Query: 347 LVRRVEPTSDANNI-LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAE 405
V +V P S A +K GDVI S + + S A R + G
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA----------ALRAQVGTMPVGSKLT 338
Query: 406 LGIIRAGTFMKVKVVL 421
LG++R G + V + L
Sbjct: 339 LGLLRDGKQVNVNLEL 354
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 145/316 (45%), Gaps = 32/316 (10%)
Query: 121 YCTHTAPDYSLPW----------QKQRQYTSTGSAFMIG--DGKLLTNAHCVEHYTQVKV 168
+C +P S P+ +Q+++ + GS +I G ++TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 169 KRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG- 227
+ D K+ AK++ + DIAL+ +++ + A + R+ D +G P G
Sbjct: 116 QLS-DGRKFDAKMVGKDPRSDIALIQIQNPKNLT-AIKMADSDALRVGDYTVAIGNPFGL 173
Query: 228 GDTISVTKGVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYR 287
G+T VT G+VS + + + E IQ DAAIN GNSGG N GE IG+ +
Sbjct: 174 GET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNSGGALVNLNGELIGINTAILA 230
Query: 288 SEEVE-NIGYVIPTTVVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSNEGV 346
+ IG+ IP+ +V + S G+ LG++ +L N L +KV + G
Sbjct: 231 PDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGE-LGIMGTEL-NSELAKAMKVDAQRGA 288
Query: 347 LVRRVEPTSDANNI-LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAE 405
V +V P S A +K GDVI S + + S A R + G
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA----------ALRAQVGTMPVGSKLT 338
Query: 406 LGIIRAGTFMKVKVVL 421
LG++R G + V + L
Sbjct: 339 LGLLRDGKQVNVNLEL 354
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 145/316 (45%), Gaps = 32/316 (10%)
Query: 121 YCTHTAPDYSLPW----------QKQRQYTSTGSAFMIG--DGKLLTNAHCVEHYTQVKV 168
+C +P S P+ +Q+++ + GS +I G ++TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 169 KRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG- 227
+ D K+ AK++ + DIAL+ +++ + A + R+ D +G P G
Sbjct: 116 QLS-DGRKFDAKMVGKDPRSDIALIQIQNPKNLT-AIKMADSDALRVGDYTVAIGNPFGL 173
Query: 228 GDTISVTKGVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYR 287
G+T VT G+VS + + + E IQ DAAIN GN+GG N GE IG+ +
Sbjct: 174 GET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNAGGALVNLNGELIGINTAILA 230
Query: 288 SEEVE-NIGYVIPTTVVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSNEGV 346
+ IG+ IP+ +V + S G+ LG++ +L N L +KV + G
Sbjct: 231 PDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGE-LGIMGTEL-NSELAKAMKVDAQRGA 288
Query: 347 LVRRVEPTSDANNI-LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAE 405
V +V P S A +K GDVI S + + S A R + G
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA----------ALRAQVGTMPVGSKLT 338
Query: 406 LGIIRAGTFMKVKVVL 421
LG++R G + V + L
Sbjct: 339 LGLLRDGKQVNVNLEL 354
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 145/316 (45%), Gaps = 32/316 (10%)
Query: 121 YCTHTAPDYSLPW----------QKQRQYTSTGSAFMIG--DGKLLTNAHCVEHYTQVKV 168
+C +P S P+ +Q+++ + GS +I G ++TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 169 KRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG- 227
+ D K+ AK++ + DIAL+ +++ + A + R+ D +G P G
Sbjct: 116 QLS-DGRKFDAKMVGKDPRSDIALIQIQNPKNLT-AIKMADSDALRVGDYTVAIGNPFGL 173
Query: 228 GDTISVTKGVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYR 287
G+T VT G+VS + + + E IQ DAAIN GN+GG N GE IG+ +
Sbjct: 174 GET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNAGGALVNLNGELIGINTAILA 230
Query: 288 SEEVE-NIGYVIPTTVVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSNEGV 346
+ IG+ IP+ +V + S G+ LG++ +L N L +KV + G
Sbjct: 231 PDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGE-LGIMGTEL-NSELAKAMKVDAQRGA 288
Query: 347 LVRRVEPTSDANNI-LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAE 405
V +V P S A +K GDVI S + + S A R + G
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA----------ALRAQVGTMPVGSKLT 338
Query: 406 LGIIRAGTFMKVKVVL 421
LG++R G + V + L
Sbjct: 339 LGLLRDGKQVNVNLEL 354
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 90/316 (28%), Positives = 145/316 (45%), Gaps = 32/316 (10%)
Query: 121 YCTHTAPDYSLPW----------QKQRQYTSTGSAFMIG--DGKLLTNAHCVEHYTQVKV 168
+C +P S P+ +Q+++ + GS +I G ++TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 169 KRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG- 227
+ D K+ AK++ + DIAL+ +++ + A + R+ D +G P G
Sbjct: 116 QLS-DGRKFDAKMVGKDPRSDIALIQIQNPKNLT-AIKMADSDALRVGDYTVAIGNPFGL 173
Query: 228 GDTISVTKGVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYR 287
G+T VT G+VS + + + E IQ DAAIN GN+GG N GE IG+ +
Sbjct: 174 GET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNAGGALVNLNGELIGINTAILA 230
Query: 288 SEEVE-NIGYVIPTTVVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSNEGV 346
+ IG+ IP+ +V + S G+ LG++ +L N L +KV + G
Sbjct: 231 PDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGE-LGIMGTEL-NSELAKAMKVDAQRGA 288
Query: 347 LVRRVEPTSDANNI-LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAE 405
V +V P S A +K GDVI S + + S A R + G
Sbjct: 289 FVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA----------ALRAQVGTMPVGSKLT 338
Query: 406 LGIIRAGTFMKVKVVL 421
LG++R G + V + L
Sbjct: 339 LGLLRDGKQVNVNLEL 354
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 128/261 (49%), Gaps = 22/261 (8%)
Query: 127 PDYSLPWQKQRQYTSTGSAFMI--GDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLAR 184
P +P +K R++ S GS +I +G ++TN H + + + + V + D + A+++
Sbjct: 64 PQSRMP-EKGRKFESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQ-DGRRLKARLIGG 121
Query: 185 GVDCDIALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLG----GDTISVTKGVV 238
+ D+A+L +++ K+ + L +G +L+ D V +G P G G++ S T G+V
Sbjct: 122 DSETDLAVLKIDA----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIV 177
Query: 239 SRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVE-NIGYV 297
S ++ + E IQ DAAI GNSGG N KGE IG+ + IG+
Sbjct: 178 SALKRSDLNIEGVENF-IQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFA 236
Query: 298 IPTTVVSHFLSDYERNGK-YTGFPCLGVLLQKLENPALRTCLKVPSN-EGVLVRRVEPTS 355
IP +V + G + G +G+ +Q L P L + P + +G LV +V P S
Sbjct: 237 IPINMVKDVAQQIIKFGSIHRGL--MGIFVQHL-TPELAQAMGYPEDFQGALVSQVNPNS 293
Query: 356 DANNI-LKEGDVIVSFDDVCV 375
A LK GD+I +D +
Sbjct: 294 PAELAGLKAGDIITQINDTKI 314
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 143/319 (44%), Gaps = 38/319 (11%)
Query: 121 YCTHTAPDYSLPW----------QKQRQYTSTGSAFMIG--DGKLLTNAHCVEHYTQVKV 168
+C +P S P+ +Q+++ + GS +I G ++TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 169 KRRGDDTKYVAKVLARGVDCDIALLSVESEEFW---KDAEPLCLGHLPRLQDAVTVVGYP 225
+ D K+ AK + + DIAL+ +++ + K A+ L R+ D +G P
Sbjct: 116 QLS-DGRKFDAKXVGKDPRSDIALIQIQNPKNLTAIKXADSDAL----RVGDYTVAIGNP 170
Query: 226 LG-GDTISVTKGVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQ 284
G G+T VT G+VS + + + E IQ DAAIN GNSGG N GE IG+
Sbjct: 171 FGLGET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNSGGALVNLNGELIGINTA 227
Query: 285 VYRSEEVE-NIGYVIPTTVVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSN 343
+ + IG+ IP+ V + S G+ LG+ +L N L KV +
Sbjct: 228 ILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVK-RGELGIXGTEL-NSELAKAXKVDAQ 285
Query: 344 EGVLVRRVEPTSDANNI-LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGD 402
G V +V P S A +K GDVI S + + S A R + G
Sbjct: 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA----------ALRAQVGTXPVGS 335
Query: 403 VAELGIIRAGTFMKVKVVL 421
LG++R G + V + L
Sbjct: 336 KLTLGLLRDGKQVNVNLEL 354
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 92/182 (50%), Gaps = 9/182 (4%)
Query: 131 LPWQKQRQYTSTGSAFMIG-DGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCD 189
LP +RQ S GS F+ +G +LTN H V + V D +KY A+ + + D
Sbjct: 46 LPPGFERQVASLGSGFIFDPEGYILTNYHVVGGADNITVTML-DGSKYDAEYIGGDEELD 104
Query: 190 IALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLGGDTISVTKGVVSRI-EVTSY 246
IA++ +++ + K L G +++ + +G PLG +VT GVVS
Sbjct: 105 IAVIKIKASD--KKFPYLEFGDSDKVKIGEWAIAIGNPLGFQH-TVTVGVVSATNRRIPK 161
Query: 247 AHGSSELLG-IQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVENIGYVIPTTVVSH 305
GS +G IQ DAAINPGNSGGP N GE IG+ + +E N+G+ IP V
Sbjct: 162 PDGSGYYVGLIQTDAAINPGNSGGPLLNIHGEVIGINTAIVNPQEAVNLGFAIPINTVKK 221
Query: 306 FL 307
FL
Sbjct: 222 FL 223
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 143/319 (44%), Gaps = 38/319 (11%)
Query: 121 YCTHTAPDYSLPW----------QKQRQYTSTGSAFMIG--DGKLLTNAHCVEHYTQVKV 168
+C +P S P+ +Q+++ + GS +I G ++TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 169 KRRGDDTKYVAKVLARGVDCDIALLSVESEEFW---KDAEPLCLGHLPRLQDAVTVVGYP 225
+ D K+ AK + + DIAL+ +++ + K A+ L R+ D +G P
Sbjct: 116 QLS-DGRKFDAKXVGKDPRSDIALIQIQNPKNLTAIKXADSDAL----RVGDYTVAIGNP 170
Query: 226 LG-GDTISVTKGVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQ 284
G G+T VT G+VS + + + E IQ DAAIN GN+GG N GE IG+
Sbjct: 171 FGLGET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNAGGALVNLNGELIGINTA 227
Query: 285 VYRSEEVE-NIGYVIPTTVVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSN 343
+ + IG+ IP+ V + S G+ LG+ +L N L KV +
Sbjct: 228 ILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVK-RGELGIXGTEL-NSELAKAXKVDAQ 285
Query: 344 EGVLVRRVEPTSDANNI-LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGD 402
G V +V P S A +K GDVI S + + S A R + G
Sbjct: 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA----------ALRAQVGTXPVGS 335
Query: 403 VAELGIIRAGTFMKVKVVL 421
LG++R G + V + L
Sbjct: 336 KLTLGLLRDGKQVNVNLEL 354
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 143/319 (44%), Gaps = 38/319 (11%)
Query: 121 YCTHTAPDYSLPW----------QKQRQYTSTGSAFMIG--DGKLLTNAHCVEHYTQVKV 168
+C +P S P+ +Q+++ + GS +I G ++TN H V++ T +KV
Sbjct: 56 FCQEGSPFQSSPFCQGGQGGNGGGQQQKFXALGSGVIIDADKGYVVTNNHVVDNATVIKV 115
Query: 169 KRRGDDTKYVAKVLARGVDCDIALLSVESEEFW---KDAEPLCLGHLPRLQDAVTVVGYP 225
+ D K+ AK + + DIAL+ +++ + K A+ L R+ D +G P
Sbjct: 116 QLS-DGRKFDAKXVGKDPRSDIALIQIQNPKNLTAIKXADSDAL----RVGDYTVAIGNP 170
Query: 226 LG-GDTISVTKGVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQ 284
G G+T VT G+VS + + + E IQ DAAIN GN+GG N GE IG+
Sbjct: 171 FGLGET--VTSGIVSALGRSGLNAENYENF-IQTDAAINRGNAGGALVNLNGELIGINTA 227
Query: 285 VYRSEEVE-NIGYVIPTTVVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSN 343
+ + IG+ IP+ V + S G+ LG+ +L N L KV +
Sbjct: 228 ILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVK-RGELGIXGTEL-NSELAKAXKVDAQ 285
Query: 344 EGVLVRRVEPTSDANNI-LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGD 402
G V +V P S A +K GDVI S + + S A R + G
Sbjct: 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA----------ALRAQVGTXPVGS 335
Query: 403 VAELGIIRAGTFMKVKVVL 421
LG++R G + V + L
Sbjct: 336 KLTLGLLRDGKQVNVNLEL 354
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 129/293 (44%), Gaps = 23/293 (7%)
Query: 142 TGSAFMIG-DGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEF 200
+GS F+ G ++TN H + + ++V D T + AKV+ D D+A+L +++ +
Sbjct: 54 SGSGFVWDKQGHIVTNYHVIRGASDLRVTL-ADQTTFDAKVVGFDQDKDVAVLRIDAPKN 112
Query: 201 WKDAEPLCLGHLPRLQDAVTVVGYPLGGDTISVTKGVVS--RIEVTSYAHGSSELLGIQI 258
P+ + + V +G P G D ++T GV+S R E++S A G IQ
Sbjct: 113 KLRPIPVGVSADLLVGQKVFAIGNPFGLDH-TLTTGVISGLRREISSAATGRPIQDVIQT 171
Query: 259 DAAINPGNSGGPAFNDKGECIGVAFQVYR-SEEVENIGYVIPTTVVSHFLSDYERNGKYT 317
DAAINPGNSGGP + G IG+ +Y S +G+ IP V + R GK T
Sbjct: 172 DAAINPGNSGGPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVT 231
Query: 318 GFPCLGVLL---QKLENPALRTCLKV---PSNEGVLVRRVEPTSDANNILKEGDVIVSFD 371
P LG+ Q +E + L + PS D L GD+I S +
Sbjct: 232 -RPILGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVN 290
Query: 372 DVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVVLNPR 424
V SN +R L Q GD + ++R K+ V L P+
Sbjct: 291 GTKV---------SNGSDLYRIL-DQCKVGDEVTVEVLRGDHKEKISVTLEPK 333
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 123/267 (46%), Gaps = 26/267 (9%)
Query: 131 LPWQKQRQYTSTGSAFMIG-DGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCD 189
LP+ K+ ++GS F++ DG ++TNAH V + +VKV+ + T Y AK+ D
Sbjct: 36 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 94
Query: 190 IALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLGGDTISVTKGVVSRIEVTSYA 247
IAL+ ++ + L LG L+ + V +G P +VT G+VS +
Sbjct: 95 IALIKIDHQ---GKLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 150
Query: 248 HG--SSELLGIQIDAAINPGNSGGPAFNDKGECIGV-AFQVYRSEEVENIGYVIPTTVVS 304
G +S++ IQ DA IN GNSGGP N GE IG+ +V I + IP+ +
Sbjct: 151 LGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKV-----TAGISFAIPSDKIK 205
Query: 305 HFLSD-YERNG--------KYTGFPCLGVLLQKLENPALRTCLKVPSNEGVLVRRVEPTS 355
FL++ ++R KY G + + K + R G + V P +
Sbjct: 206 KFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDT 265
Query: 356 DAN-NILKEGDVIVSFDDVCVGSEGTV 381
A LKE DVI+S + V S V
Sbjct: 266 PAEAGGLKENDVIISINGQSVVSANDV 292
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 123/267 (46%), Gaps = 26/267 (9%)
Query: 131 LPWQKQRQYTSTGSAFMIG-DGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCD 189
LP+ K+ ++GS F++ DG ++TNAH V + +VKV+ + T Y AK+ D
Sbjct: 36 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 94
Query: 190 IALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLGGDTISVTKGVVSRIEVTSYA 247
IAL+ ++ + L LG L+ + V +G P +VT G+VS +
Sbjct: 95 IALIKIDHQGKLP---VLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 150
Query: 248 HG--SSELLGIQIDAAINPGNSGGPAFNDKGECIGV-AFQVYRSEEVENIGYVIPTTVVS 304
G +S++ IQ DA IN GN+GGP N GE IG+ +V I + IP+ +
Sbjct: 151 LGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKV-----TAGISFAIPSDKIK 205
Query: 305 HFLSD-YERNG--------KYTGFPCLGVLLQKLENPALRTCLKVPSNEGVLVRRVEPTS 355
FL++ ++R KY G + + K + R G + V P +
Sbjct: 206 KFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDT 265
Query: 356 DAN-NILKEGDVIVSFDDVCVGSEGTV 381
A LKE DVI+S + V S V
Sbjct: 266 PAEAGGLKENDVIISINGQSVVSANDV 292
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 17/192 (8%)
Query: 131 LPWQKQRQYTSTGSAFMIG-DGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCD 189
LP+ K+ ++GS F++ DG ++TNAH V + +VKV+ + T Y AK+ D
Sbjct: 36 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 94
Query: 190 IALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLGGDTISVTKGVVSRIEVTSYA 247
IAL+ ++ + L LG L+ + V +G P +VT G+VS +
Sbjct: 95 IALIKIDHQ---GKLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 150
Query: 248 HG--SSELLGIQIDAAINPGNSGGPAFNDKGECIGV-AFQVYRSEEVENIGYVIPTTVVS 304
G +S++ IQ DA IN GNSGGP N GE IG+ +V I + IP+ +
Sbjct: 151 LGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKV-----TAGISFAIPSDKIK 205
Query: 305 HFLSD-YERNGK 315
FL++ ++R K
Sbjct: 206 KFLTESHDRQAK 217
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 131 LPWQKQRQYTSTGSAFMIG-DGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCD 189
LP+ K+ ++GS F++ DG ++TNAH V + +VKV+ + T Y AK+ D
Sbjct: 53 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 111
Query: 190 IALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLGGDTISVTKGVVSRIEVTSYA 247
IAL+ ++ + L LG L+ + V +G P +VT G+VS +
Sbjct: 112 IALIKIDHQ---GKLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 167
Query: 248 HG--SSELLGIQIDAAINPGNSGGPAFNDKGECIGV-AFQVYRSEEVENIGYVIPTTVVS 304
G +S++ IQ DA IN GNSGGP N GE IG+ +V I + IP+ +
Sbjct: 168 LGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKV-----TAGISFAIPSDKIK 222
Query: 305 HFLSD 309
FL++
Sbjct: 223 KFLTE 227
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 16/185 (8%)
Query: 131 LPWQKQRQYTSTGSAFMIG-DGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCD 189
LP+ K+ ++GS F++ DG ++TNAH V + +VKV+ + T Y AK+ D
Sbjct: 53 LPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGAT-YEAKIKDVDEKAD 111
Query: 190 IALLSVESEEFWKDAEPLCLGHLPRLQ--DAVTVVGYPLGGDTISVTKGVVSRIEVTSYA 247
IAL+ ++ + L LG L+ + V +G P +VT G+VS +
Sbjct: 112 IALIKIDHQ---GKLPVLLLGRSSELRPGEFVVAIGSPFSLQN-TVTTGIVSTTQRGGKE 167
Query: 248 HG--SSELLGIQIDAAINPGNSGGPAFNDKGECIGV-AFQVYRSEEVENIGYVIPTTVVS 304
G +S++ IQ DA IN GN+GGP N GE IG+ +V I + IP+ +
Sbjct: 168 LGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGINTLKV-----TAGISFAIPSDKIK 222
Query: 305 HFLSD 309
FL++
Sbjct: 223 KFLTE 227
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 124/287 (43%), Gaps = 22/287 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 21 QFDSTDETPASYNLAVRRAAPAVVNVYNRG----LNTNSHNQLEIRTLGSGVIMDQRGYI 76
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 77 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 134
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L Q DA+INPGN GG
Sbjct: 135 HIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINPGNXGGAL 190
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGKYT-GFPCLGVLL 326
N GE +G+ + E E IG+ IP + + + R+G+ G+ +G
Sbjct: 191 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIG--- 247
Query: 327 QKLENPALRTCLKVPSNEGVLVRRVEPTSDANNI-LKEGDVIVSFDD 372
+ P + +G++V V P A N ++ D+I+S D+
Sbjct: 248 GREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDN 294
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 21 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 76
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 77 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 134
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L Q DA+INPGNSGG
Sbjct: 135 HIGDVVLAIGNPANLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINPGNSGGAL 190
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 191 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 100/228 (43%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 21 QFDSTDETPASYNLAVRRAAPAVVNVYNRGLNTN----SHNQLEIRTLGSGVIMDQRGYI 76
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 77 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 134
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L Q DA+INPGNSGG
Sbjct: 135 HIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINPGNSGGAL 190
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 191 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 120/258 (46%), Gaps = 21/258 (8%)
Query: 132 PWQKQRQYTSTGSAFMIG-DGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDI 190
P+ + S GS F++ DG ++TNAH V +V+V+ DT Y A V A DI
Sbjct: 38 PFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDT-YEAVVTAVDPVADI 96
Query: 191 ALLSVESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLGGDTISVTKGVVSRIEVTSYAHG- 249
A L ++++E PL R + V +G P ++T G+VS + + G
Sbjct: 97 ATLRIQTKEPLPTL-PLGRSADVRQGEFVVAMGSPFALQN-TITSGIVSSAQRPARDLGL 154
Query: 250 -SSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVENIGYVIPTTVVSHFLS 308
+ + IQ DAAI+ GN+GGP N GE IGV + I + IP+ + FL
Sbjct: 155 PQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTM----KVTAGISFAIPSDRLREFLH 210
Query: 309 DYERNGKYTGFPC-----LGVLLQKLENPALRTC-LKVPS----NEGVLVRRVEPTSDAN 358
E+ +G +GV++ L L L+ PS GVL+ +V S A+
Sbjct: 211 RGEKKNSSSGISGSQRRYIGVMMLTLSPSILAELQLREPSFPDVQHGVLIHKVILGSPAH 270
Query: 359 NI-LKEGDVIVSFDDVCV 375
L+ GDVI++ + V
Sbjct: 271 RAGLRPGDVILAIGEQMV 288
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 127/302 (42%), Gaps = 32/302 (10%)
Query: 131 LPWQKQRQYTSTGSAFMI--GDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDC 188
LP Q + + GS +I G +LTN H + ++ ++ D ++ AK++
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLN-DGREFDAKLIGSDDQS 111
Query: 189 DIALLSVE-----SEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG-GDTISVTKGVVSRIE 242
DIALL ++ ++ D++ L R+ D VG P G G T T G+VS +
Sbjct: 112 DIALLQIQNPSKLTQIAIADSDKL------RVGDFAVAVGNPFGLGQT--ATSGIVSALG 163
Query: 243 VTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVE-NIGYVIPTT 301
+ E IQ DA+IN GNSGG N GE IG+ + IG+ IP+
Sbjct: 164 RSGLNLEGLENF-IQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSN 222
Query: 302 VVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSNEGVLVRRVEPTS-DANNI 360
+ G+ LG+ ++ + + + G V V P S A
Sbjct: 223 MARTLAQQLIDFGEIK-RGLLGIKGTEM-SADIAKAFNLDVQRGAFVSEVLPGSGSAKAG 280
Query: 361 LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVV 420
+K GD+I S + + N R I+ G +LG++R G ++V+V
Sbjct: 281 VKAGDIITSLNGKPL----------NSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVT 330
Query: 421 LN 422
L+
Sbjct: 331 LD 332
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 15/227 (6%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 21 QFDSTDETPASYNLAVRRAAPAVVNVYNRGLNTN----SHNQLEIRTLGSGVIMDQRGYI 76
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 77 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 134
Query: 214 RLQDAVTVVGYPLGGDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPAF 272
+ D V +G P + +T+G++S + G L Q DA+INPGNSGG
Sbjct: 135 HIGDVVLAIGNPYNLGQV-ITQGIISATGRIGLNPTGRQNFL--QTDASINPGNSGGALV 191
Query: 273 NDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 192 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 127/302 (42%), Gaps = 32/302 (10%)
Query: 131 LPWQKQRQYTSTGSAFMI--GDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDC 188
LP Q + + GS +I G +LTN H + ++ ++ D ++ AK++
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLN-DGREFDAKLIGSDDQS 111
Query: 189 DIALLSVE-----SEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG-GDTISVTKGVVSRIE 242
DIALL ++ ++ D++ L R+ D VG P G G T T G+VS +
Sbjct: 112 DIALLQIQNPSKLTQIAIADSDKL------RVGDFAVAVGNPFGLGQT--ATSGIVSALG 163
Query: 243 VTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVE-NIGYVIPTT 301
+ E IQ DA+IN GN+GG N GE IG+ + IG+ IP+
Sbjct: 164 RSGLNLEGLENF-IQTDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSN 222
Query: 302 VVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTCLKVPSNEGVLVRRVEPTS-DANNI 360
+ G+ LG+ ++ + + + G V V P S A
Sbjct: 223 MARTLAQQLIDFGEIK-RGLLGIKGTEM-SADIAKAFNLDVQRGAFVSEVLPGSGSAKAG 280
Query: 361 LKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLISQKFAGDVAELGIIRAGTFMKVKVV 420
+K GD+I S + + N R I+ G +LG++R G ++V+V
Sbjct: 281 VKAGDIITSLNGKPL----------NSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVT 330
Query: 421 LN 422
L+
Sbjct: 331 LD 332
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 124/286 (43%), Gaps = 22/286 (7%)
Query: 96 FDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKLL 154
FDS ++ S NL AVV VY + Q + + GS ++ G ++
Sbjct: 1 FDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYII 56
Query: 155 TNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLPR 214
TN H + Q+ V + D + A ++ D+A+L +++ P+ +P
Sbjct: 57 TNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLIIKATGGLPTI-PINARRVPH 114
Query: 215 LQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPAF 272
+ D V +G P G TI T+G++S + G L Q DA+IN GNSGG
Sbjct: 115 IGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINHGNSGGALV 170
Query: 273 NDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGKYT-GFPCLGVLLQ 327
N GE +G+ + E E IG+ IP + + + R+G+ G+ +G
Sbjct: 171 NSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIG---G 227
Query: 328 KLENPALRTCLKVPSNEGVLVRRVEPTSDANNI-LKEGDVIVSFDD 372
+ P + +G++V V P A N ++ D+I+S D+
Sbjct: 228 REIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDN 273
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 21 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 76
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 77 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 134
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L Q DA+IN GNSGG
Sbjct: 135 HIGDVVLAIGNPANLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINHGNSGGAL 190
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 191 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 11 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 66
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 67 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 124
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L Q DA+IN GNSGG
Sbjct: 125 HIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINHGNSGGAL 180
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 181 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 228
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 23 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 78
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 79 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 136
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L Q DA+IN GNSGG
Sbjct: 137 HIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINHGNSGGAL 192
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 193 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 240
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 23 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 78
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 79 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 136
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRIEVTSY-AHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S G L Q DA+IN GNSGG
Sbjct: 137 HIGDVVLAIGNPYNLGQTI--TQGIISATGAIGLNPTGRQNFL--QTDASINHGNSGGAL 192
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 193 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 240
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 98/228 (42%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 21 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 76
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 77 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 134
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRIEVTSY-AHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S G L Q DA+IN GNSGG
Sbjct: 135 HIGDVVLAIGNPYNLGQTI--TQGIISATGAIGLNPTGRQNFL--QTDASINHGNSGGAL 190
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 191 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 23 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 78
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 79 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 136
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L Q DA+IN GN GG
Sbjct: 137 HIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINHGNXGGAL 192
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 193 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 240
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 21 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 76
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 77 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 134
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L Q DA+IN GN GG
Sbjct: 135 HIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINHGNXGGAL 190
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 191 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 23 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 78
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 79 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 136
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L DA+IN GNSGG
Sbjct: 137 HIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFLAT--DASINHGNSGGAL 192
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 193 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 240
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS ++ G +
Sbjct: 21 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYI 76
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 77 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 134
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L DA+IN GNSGG
Sbjct: 135 HIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFLAT--DASINHGNSGGAL 190
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE +G+ + E E IG+ IP + + + R+G+
Sbjct: 191 VNSLGELMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGR 238
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 19/181 (10%)
Query: 131 LPWQKQRQYTSTGSAFMIG--DGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDC 188
LP Q + + GS +I G +LTN H + ++ ++ D ++ AK++
Sbjct: 53 LPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLN-DGREFDAKLIGSDDQS 111
Query: 189 DIALLSVE-----SEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG-GDTISVTKGVVSRIE 242
DIALL ++ ++ D++ L R+ D VG P G G T T G+VS +
Sbjct: 112 DIALLQIQNPSKLTQIAIADSDKL------RVGDFAVAVGNPFGLGQT--ATSGIVSALG 163
Query: 243 VTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVE-NIGYVIPTT 301
+ E IQ DA+IN GNSGG N GE IG+ + IG+ IP+
Sbjct: 164 RSGLNLEGLENF-IQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSN 222
Query: 302 V 302
+
Sbjct: 223 M 223
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 96/228 (42%), Gaps = 17/228 (7%)
Query: 95 QFDSKEQLSESGNLQDAAFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKL 153
QFDS ++ S NL AVV VY + Q + + GS + G +
Sbjct: 23 QFDSTDETPASYNLAVRRAAPAVVNVYNR----GLNTNSHNQLEIRTLGSGVIXDQRGYI 78
Query: 154 LTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLP 213
+TN H + Q+ V + D + A ++ D+A+L + + P+ +P
Sbjct: 79 ITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVP 136
Query: 214 RLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPA 271
+ D V +G P G TI T+G++S + G L Q DA+IN GNSGG
Sbjct: 137 HIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINHGNSGGAL 192
Query: 272 FNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGK 315
N GE G+ + E E IG+ IP + + R+G+
Sbjct: 193 VNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGR 240
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 115/266 (43%), Gaps = 22/266 (8%)
Query: 116 AVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKLLTNAHCVEHYTQVKVKRRGDD 174
AVV VY + Q + + GS ++ G ++TN H + Q+ V + D
Sbjct: 16 AVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQ-DG 70
Query: 175 TKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG-GDTISV 233
+ A ++ D+A+L + + P+ +P + D V +G P G TI
Sbjct: 71 RVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVPHIGDVVLAIGNPYNLGQTI-- 127
Query: 234 TKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVY----RS 288
T+G++S + G L Q DA+IN GNSGG N GE +G+ +
Sbjct: 128 TQGIISATGRIGLNPTGRQNFL--QTDASINHGNSGGALVNSLGELMGINTLSFDKSNDG 185
Query: 289 EEVENIGYVIPTTVVSHFLSDYERNGKYT-GFPCLGVLLQKLENPALRTCLKVPSNEGVL 347
E E IG+ IP + + + R+G+ G+ +G + P + +G++
Sbjct: 186 ETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIG---GREIAPLHAQGGGIDQLQGIV 242
Query: 348 VRRVEPTSDANNI-LKEGDVIVSFDD 372
V V P A N ++ D+I+S D+
Sbjct: 243 VNEVSPDGPAANAGIQVNDLIISVDN 268
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 17/230 (7%)
Query: 151 GKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLG 210
G ++TN H + Q+ V + D + A ++ D+A+L + + P+
Sbjct: 48 GYIITNKHVINDADQIIVALQ-DGRVFEALLVGSDSLTDLAVLKINATGGLPTI-PINAR 105
Query: 211 HLPRLQDAVTVVGYPLG-GDTISVTKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSG 268
+P + D V +G P G TI T+G++S + G L Q DA+IN GNSG
Sbjct: 106 RVPHIGDVVLAIGNPYNLGQTI--TQGIISATGRIGLNPTGRQNFL--QTDASINHGNSG 161
Query: 269 GPAFNDKGECIGVAFQVY----RSEEVENIGYVIPTTVVSHFLSDYERNGKYT-GFPCLG 323
G N GE G+ + E E IG+ IP + + R+G+ G+ +G
Sbjct: 162 GALVNSLGELXGINTLSFDKSNDGETPEGIGFAIPFQLATKIXDKLIRDGRVIRGYIGIG 221
Query: 324 VLLQKLENPALRTCLKVPSNEGVLVRRVEPTSDANNI-LKEGDVIVSFDD 372
+ P + +G++V V P A N ++ D+I+S D+
Sbjct: 222 ---GREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDN 268
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 17/206 (8%)
Query: 116 AVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGD-GKLLTNAHCVEHYTQVKVKRRGDD 174
AVV VY + Q + + GS ++ G ++TN H + Q+ V + D
Sbjct: 16 AVVNVYNR----GLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQ-DG 70
Query: 175 TKYVAKVLARGVDCDIALLSVESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLG-GDTISV 233
+ A ++ D+A+L + + P+ +P + D V +G P G TI
Sbjct: 71 RVFEALLVGSDSLTDLAVLKINATGGLPTI-PINARRVPHIGDVVLAIGNPYNLGQTI-- 127
Query: 234 TKGVVSRI-EVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVY----RS 288
T+G++S + G L Q DA+IN GNSGG N GE +G+ +
Sbjct: 128 TQGIISATGRIGLNPTGRQNFL--QTDASINHGNSGGALVNSLGELMGINTLSFDKSNDG 185
Query: 289 EEVENIGYVIPTTVVSHFLSDYERNG 314
E E IG+ IP + + + R+G
Sbjct: 186 ETPEGIGFAIPFQLATKIMDKLIRDG 211
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 27/204 (13%)
Query: 137 RQYTSTGSAFMIGDGKLLTNAHCVEHYTQVKVKRRGDDTKYV------AKVLARGVD--C 188
RQ + +G +LTN H + + + T A G D
Sbjct: 28 RQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFTVVGADPTS 87
Query: 189 DIALLSVESEEFWKDAEPLCLGHLP--RLQDAVTVVGYPLGGDTISVTKGVVSR----IE 242
DIA++ V+ P+ LG R+ V +G PLG + +VT G+VS +
Sbjct: 88 DIAVVRVQGVSGLT---PISLGSSSDLRVGQPVLAIGSPLGLEG-TVTTGIVSALNRPVS 143
Query: 243 VTSYAHGSSELL-GIQIDAAINPGNSGGPAFNDKGECIGV--AFQVYRSEEVE------N 293
T A + +L IQ DAAINPGNSGG N + +GV A ++ +
Sbjct: 144 TTGEAGNQNTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIG 203
Query: 294 IGYVIPTTVVSHFLSDYERNGKYT 317
+G+ IP + GK +
Sbjct: 204 LGFAIPVDQAKRIADELISTGKAS 227
>pdb|2AS9|A Chain A, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
pdb|2AS9|B Chain B, Functional And Structural Characterization Of Spl
Proteases From Staphylococcus Aureus
Length = 210
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 29/159 (18%)
Query: 144 SAFMIGDGKLLTNAHCVEHYT---QVKVKRRGDDTK---YVAKVLAR-GVDCDIALLSVE 196
+ F+IG ++TN H + Y ++ GD Y K ++ D DI+++++E
Sbjct: 26 TGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIE 85
Query: 197 SE---------EFWKDAEPLCLGHLPRLQDAVTVVGYPLGGDTISV---TKGVVSRIEVT 244
+ F ++ + ++ D + V+GYPL + G + RI+
Sbjct: 86 EQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQNSFKQFESTGTIKRIK-- 143
Query: 245 SYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAF 283
+L DA I PGNSG P N E IGV +
Sbjct: 144 ------DNIL--NFDAYIEPGNSGSPVLNSNNEVIGVVY 174
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 291 VENIGYVIPTTVVSHFLSDYERNGKYTGFPCLGVLLQKLENPALRTC--LKVPSN--EGV 346
+E +G+ IP + + E+NGK T P LG+ + L N + L +PSN GV
Sbjct: 1 MEGLGFAIPANDAINIIEQLEKNGKVTR-PALGIQMVNLSNVSTSDIRRLNIPSNVTSGV 59
Query: 347 LVRRVEPTSDANNILKEGDVIVSFDDVCVGS 377
+VR V+ AN L++ DVI DD + S
Sbjct: 60 IVRSVQSNMPANGHLEKYDVITKVDDKEIAS 90
>pdb|2W7S|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7S|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (1.8a)
pdb|2W7U|A Chain A, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|B Chain B, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|C Chain C, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|2W7U|D Chain D, Spla Serine Protease Of Staphylococcus Aureus (2.4a)
pdb|3UFA|A Chain A, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
pdb|3UFA|B Chain B, Crystal Structure Of The Staphylococcal Serine Protease
Spla In Complex With A Specific Phosphonate Inhibitor
Length = 200
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 189 DIALL-----SVESEEFWKDAEPLCLGHLPRLQDAVTVVGYPLGGDT---ISVTKGVVSR 240
D+A++ S E F K+ +++D ++V+GYP G T + + G ++
Sbjct: 78 DLAIVHVHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTKYKMFESTGTINH 137
Query: 241 IEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAFQVYRSEEVE-NIG-YVI 298
I T ++ DA PGNSG P N K E IG+ + +E E N G Y
Sbjct: 138 ISGTF----------MEFDAYAQPGNSGSPVLNSKHELIGILYAGSGKDESEKNFGVYFT 187
Query: 299 P 299
P
Sbjct: 188 P 188
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 143 GSAFMIGDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWK 202
G+ F+I +++TNAH V V V D + A V++ D+A+L+V
Sbjct: 60 GTGFVISPDRVMTNAHVVAGSNNVTV--YAGDKPFEATVVSYDPSVDVAILAVPHLPPPP 117
Query: 203 D---AEPLCLGHLPRLQDAVTVVGYPLGGDTISVTKGVVSRIEVTSY-AHGSSELLG--- 255
AEP G V V+GYP GG+ + + I ++ +G E +
Sbjct: 118 LVFAAEPAKTGA------DVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDV 171
Query: 256 IQIDAAINPGNSGGPAFNDKGECIGVAF 283
I A + G+SGGP + G+ +GV F
Sbjct: 172 YTIRADVEQGDSGGPLIDLNGQVLGVVF 199
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 143 GSAFMIGDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWK 202
G+ F+I +++TNAH V V V D + A V++ D+A+L+V
Sbjct: 42 GTGFVISPDRVMTNAHVVAGSNNVTV--YAGDKPFEATVVSYDPSVDVAILAVPHLPPPP 99
Query: 203 D---AEPLCLGHLPRLQDAVTVVGYPLGGDTISVTKGVVSRIEVTSY-AHGSSELLG--- 255
AEP G V V+GYP GG+ + + I ++ +G E +
Sbjct: 100 LVFAAEPAKTGA------DVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDV 153
Query: 256 IQIDAAINPGNSGGPAFNDKGECIGVAF 283
I A + G+SGGP + G+ +GV F
Sbjct: 154 YTIRADVEQGDSGGPLIDLNGQVLGVVF 181
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 66/148 (44%), Gaps = 15/148 (10%)
Query: 143 GSAFMIGDGKLLTNAHCVEHYTQVKVKRRGDDTKYVAKVLARGVDCDIALLSVESEEFWK 202
G+ F+I +++TNAH V V V D + A V++ D+A+L+V
Sbjct: 40 GTGFVISPDRVMTNAHVVAGSNNVTV--YAGDKPFEATVVSYDPSVDVAILAVPHLPPPP 97
Query: 203 D---AEPLCLGHLPRLQDAVTVVGYPLGGDTISVTKGVVSRIEVTSY-AHGSSELLG--- 255
AEP G V V+GYP GG+ + + I ++ +G E +
Sbjct: 98 LVFAAEPAKTGA------DVVVLGYPGGGNFTATPARIREAIRLSGPDIYGDPEPVTRDV 151
Query: 256 IQIDAAINPGNSGGPAFNDKGECIGVAF 283
I A + G++GGP + G+ +GV F
Sbjct: 152 YTIRADVEQGDAGGPLIDLNGQVLGVVF 179
>pdb|1QY6|A Chain A, Structue Of V8 Protease From Staphylococcus Aureus
pdb|2O8L|A Chain A, Structure Of V8 Protease From Staphylococcus Aureus
Length = 274
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 39/168 (23%)
Query: 140 TSTGSAFMIGDGKLLTNAHCVEH--------------YTQVKVKRRGDDTKYVAKVLARG 185
T S ++G LLTN H V+ Q G + + K G
Sbjct: 33 TFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG 92
Query: 186 VDCDIALLSVESEEFWKD----AEPLCLGHLPRLQ--DAVTVVGYPLGGD----TISVTK 235
D+A++ E K +P + + Q +TV GYP GD T+ +K
Sbjct: 93 ---DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYP--GDKPVATMWESK 147
Query: 236 GVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAF 283
G ++ Y G + +Q D + GNSG P FN+K E IG+ +
Sbjct: 148 GKIT------YLKGEA----MQYDLSTTGGNSGSPVFNEKNEVIGIHW 185
>pdb|1WCZ|A Chain A, Crystal Structure Of An Alkaline Form Of V8 Protease From
Staphylococcus Aureus
Length = 268
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 66/168 (39%), Gaps = 39/168 (23%)
Query: 140 TSTGSAFMIGDGKLLTNAHCVEH--------------YTQVKVKRRGDDTKYVAKVLARG 185
T S ++G LLTN H V+ Q G + + K G
Sbjct: 33 TFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEG 92
Query: 186 VDCDIALLSVESEEFWKD----AEPLCLGHLPRLQ--DAVTVVGYPLGGD----TISVTK 235
D+A++ E K +P + + Q +TV GYP GD T+ +K
Sbjct: 93 ---DLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYP--GDKPVATMWESK 147
Query: 236 GVVSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAF 283
G ++ Y G + +Q D + GNSG P FN+K E IG+ +
Sbjct: 148 GKIT------YLKGEA----MQYDLSTTGGNSGSPVFNEKNEVIGIHW 185
>pdb|2VID|A Chain A, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
pdb|2VID|B Chain B, Serine Protease Splb From Staphylococcus Aureus At 1.8a
Resolution
Length = 204
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 29/161 (18%)
Query: 142 TGSAFMIGDGKLLTNAHCVEHY------TQVKVKRRGDDTKY-VAKVLARGVDCDIALLS 194
+ + F++G +LTN H ++Y T +G+ Y + K++ D++++
Sbjct: 23 SATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQ 82
Query: 195 VESE---------EFWKDAEPLCLGHLPRLQDAVTVVGYPLGGDTISV---TKGVVSRIE 242
VE F + P + + + V+GYP V + G V +E
Sbjct: 83 VEERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKNKYVLYESTGPVMSVE 142
Query: 243 VTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGVAF 283
GSS I A GNSG P N E +G+ F
Sbjct: 143 ------GSS----IVYSAHTESGNSGSPVLNSNNELVGIHF 173
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 32/164 (19%)
Query: 141 STGSAFMIGDGKLLTNAHC----------VEHYTQVKVKRRGD-DTKY----VAKVLAR- 184
++ + +IG +LTN H V + G+ +T Y V ++L
Sbjct: 55 TSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP 114
Query: 185 -GVDCDIALLSVESEE----FWKDAEPLCLGHLPRLQDA--VTVVGYPLGGDTISVTKGV 237
G D+AL+ ++ ++ P +G L+D + ++GYP + +
Sbjct: 115 FGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHR-- 172
Query: 238 VSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGV 281
S IE+T+ + G G + PGNSG FN GE +G+
Sbjct: 173 -SEIELTTLSRGL-RYYGFTV-----PGNSGSGIFNSNGELVGI 209
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 32/164 (19%)
Query: 141 STGSAFMIGDGKLLTNAHC----------VEHYTQVKVKRRGD-DTKY----VAKVLAR- 184
++ + +IG +LTN H V + G+ +T Y V ++L
Sbjct: 55 TSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEP 114
Query: 185 -GVDCDIALLSVESEE----FWKDAEPLCLGHLPRLQDA--VTVVGYPLGGDTISVTKGV 237
G D+AL+ ++ ++ P +G L+D + ++GYP + +
Sbjct: 115 FGAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKVNQMHR-- 172
Query: 238 VSRIEVTSYAHGSSELLGIQIDAAINPGNSGGPAFNDKGECIGV 281
S IE+T+ + G G + PGN+G FN GE +G+
Sbjct: 173 -SEIELTTLSRGL-RYYGFTV-----PGNAGSGIFNSNGELVGI 209
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 341 PSNEGVLVRRVEPTSDANNILKEGDVIV 368
P ++G+ V RV+P A+ +L+ GD I+
Sbjct: 21 PDDDGIFVTRVQPEGPASKLLQPGDKII 48
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 341 PSNEGVLVRRVEPTSDANNILKEGDVIV 368
P ++G+ V RV+P A+ +L+ GD I+
Sbjct: 22 PDDDGIFVTRVQPEGPASKLLQPGDKII 49
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 341 PSNEGVLVRRVEPTSDANNILKEGDVIV 368
P ++G+ V RV+P A+ +L+ GD I+
Sbjct: 40 PDDDGIFVTRVQPEGPASKLLQPGDKII 67
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 341 PSNEGVLVRRVEPTSDANNILKEGDVIV 368
P ++G+ V RV+P A+ +L+ GD I+
Sbjct: 32 PDDDGIFVTRVQPEGPASKLLQPGDKII 59
>pdb|3C9G|A Chain A, Crystal Structure Of Uncharacterized Upf0201 Protein
Af_135
pdb|3C9G|B Chain B, Crystal Structure Of Uncharacterized Upf0201 Protein
Af_135
Length = 142
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 338 LKVPSNEGVLVR-RVEPTSDANNILKEGDVIVSFDDVCVGSEGTVPFRSNERIAFRYLIS 396
LK+ N + +R ++ PT + +LK I ++ + EG V R+ FR L+
Sbjct: 2 LKLAKNVEIEIRTKIHPTESEDKVLKAIRNIFPDAEIEISEEGEVYGRAYSLDRFRELLR 61
Query: 397 QKFAGDVAELGIIRAGTFMKVKVVLNPRVHLV 428
++ D A I++ +V + LN + V
Sbjct: 62 KQRILDTARSEILKGRNGKEVTIYLNKQTATV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,470,498
Number of Sequences: 62578
Number of extensions: 739613
Number of successful extensions: 1602
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 65
length of query: 606
length of database: 14,973,337
effective HSP length: 104
effective length of query: 502
effective length of database: 8,465,225
effective search space: 4249542950
effective search space used: 4249542950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)