Query 007362
Match_columns 606
No_of_seqs 329 out of 2861
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 22:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007362.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007362hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0745 Putative ATP-dependent 100.0 5.9E-64 1.3E-68 524.5 31.0 346 260-605 132-513 (564)
2 COG1219 ClpX ATP-dependent pro 100.0 9.2E-59 2E-63 471.0 24.8 328 258-606 46-373 (408)
3 PRK05342 clpX ATP-dependent pr 100.0 1.4E-46 3E-51 407.1 30.4 326 261-606 59-384 (412)
4 TIGR00382 clpX endopeptidase C 100.0 5.2E-46 1.1E-50 401.0 29.5 326 261-606 65-390 (413)
5 TIGR00390 hslU ATP-dependent p 100.0 4.3E-38 9.4E-43 336.2 22.2 269 263-606 2-410 (441)
6 PRK05201 hslU ATP-dependent pr 100.0 1.3E-37 2.9E-42 332.7 22.1 270 262-606 4-412 (443)
7 COG0542 clpA ATP-binding subun 100.0 4.7E-33 1E-37 315.5 19.4 276 249-603 463-757 (786)
8 COG1220 HslU ATP-dependent pro 100.0 5.1E-32 1.1E-36 277.7 20.5 270 262-606 4-413 (444)
9 PRK11034 clpA ATP-dependent Cl 100.0 1.7E-29 3.6E-34 291.2 21.6 274 249-603 430-718 (758)
10 CHL00095 clpC Clp protease ATP 100.0 2E-28 4.4E-33 286.9 23.2 285 249-603 481-784 (821)
11 TIGR02639 ClpA ATP-dependent C 100.0 2.8E-28 6E-33 282.7 20.9 274 249-603 426-714 (731)
12 TIGR03345 VI_ClpV1 type VI sec 99.9 4.3E-27 9.4E-32 275.4 21.8 278 249-603 538-833 (852)
13 TIGR03346 chaperone_ClpB ATP-d 99.9 2.3E-25 4.9E-30 262.1 23.2 274 249-603 537-828 (852)
14 PRK10865 protein disaggregatio 99.9 2E-25 4.4E-30 262.0 22.5 273 249-603 540-831 (857)
15 KOG0738 AAA+-type ATPase [Post 99.9 2.3E-24 5E-29 225.0 24.8 167 275-485 214-382 (491)
16 COG1223 Predicted ATPase (AAA+ 99.9 2.3E-23 5.1E-28 208.0 15.1 216 273-602 121-337 (368)
17 KOG0730 AAA+-type ATPase [Post 99.9 3.5E-23 7.7E-28 228.1 17.3 219 273-603 434-655 (693)
18 KOG1051 Chaperone HSP104 and r 99.9 1.3E-22 2.8E-27 233.4 19.9 285 247-603 532-836 (898)
19 COG1222 RPT1 ATP-dependent 26S 99.9 1.4E-22 3.1E-27 210.5 16.4 176 275-545 153-333 (406)
20 CHL00181 cbbX CbbX; Provisiona 99.9 9.5E-22 2.1E-26 204.7 21.0 232 262-602 12-256 (287)
21 KOG0734 AAA+-type ATPase conta 99.9 2.8E-22 6.1E-27 215.5 15.0 230 263-603 294-524 (752)
22 TIGR02880 cbbX_cfxQ probable R 99.9 3.3E-21 7.1E-26 200.4 20.4 232 262-602 11-255 (284)
23 KOG0736 Peroxisome assembly fa 99.9 1.6E-21 3.4E-26 217.1 18.2 219 275-603 674-898 (953)
24 KOG0733 Nuclear AAA ATPase (VC 99.9 1.5E-21 3.3E-26 212.8 16.9 219 275-601 513-734 (802)
25 TIGR00763 lon ATP-dependent pr 99.9 4.1E-21 8.8E-26 224.3 21.5 255 249-604 293-558 (775)
26 KOG0739 AAA+-type ATPase [Post 99.9 8.1E-22 1.7E-26 200.0 13.4 163 275-485 135-299 (439)
27 COG0466 Lon ATP-dependent Lon 99.9 2.1E-21 4.6E-26 215.9 17.7 253 251-604 298-561 (782)
28 TIGR02881 spore_V_K stage V sp 99.9 1.2E-20 2.7E-25 193.5 21.9 225 269-603 3-241 (261)
29 KOG0731 AAA+-type ATPase conta 99.9 3.5E-21 7.6E-26 217.8 17.7 182 271-546 310-494 (774)
30 PRK10787 DNA-binding ATP-depen 99.9 9.8E-21 2.1E-25 220.1 22.0 249 253-604 299-559 (784)
31 PF05496 RuvB_N: Holliday junc 99.9 1E-20 2.2E-25 188.1 17.9 202 270-595 22-224 (233)
32 KOG2004 Mitochondrial ATP-depe 99.8 1.8E-20 3.9E-25 207.4 16.1 251 253-604 388-649 (906)
33 COG2256 MGS1 ATPase related to 99.8 3.9E-20 8.4E-25 195.1 15.1 169 326-597 49-217 (436)
34 PF07724 AAA_2: AAA domain (Cd 99.8 1.3E-20 2.7E-25 182.2 7.9 165 325-528 3-171 (171)
35 KOG0733 Nuclear AAA ATPase (VC 99.8 2.5E-19 5.3E-24 195.7 16.5 183 270-545 188-372 (802)
36 CHL00195 ycf46 Ycf46; Provisio 99.8 7.3E-19 1.6E-23 194.7 19.0 216 275-603 230-447 (489)
37 TIGR01241 FtsH_fam ATP-depende 99.8 1.8E-18 3.8E-23 193.0 21.1 183 270-546 53-237 (495)
38 COG0465 HflB ATP-dependent Zn 99.8 5.7E-19 1.2E-23 196.8 15.1 135 271-431 149-283 (596)
39 COG3829 RocR Transcriptional r 99.8 3.6E-19 7.7E-24 194.1 13.0 220 305-598 248-477 (560)
40 COG0464 SpoVK ATPases of the A 99.8 3.8E-18 8.3E-23 190.1 19.8 221 275-604 244-466 (494)
41 TIGR01243 CDC48 AAA family ATP 99.8 3.7E-18 8.1E-23 198.7 20.5 217 275-603 455-675 (733)
42 KOG0728 26S proteasome regulat 99.8 3.4E-18 7.3E-23 170.4 16.1 180 271-545 145-329 (404)
43 COG2204 AtoC Response regulato 99.8 1E-18 2.2E-23 190.3 12.8 220 304-598 143-372 (464)
44 PTZ00454 26S protease regulato 99.8 1.3E-17 2.7E-22 180.9 21.0 221 275-603 147-369 (398)
45 COG3604 FhlA Transcriptional r 99.8 1.3E-18 2.9E-23 187.5 13.1 220 305-600 226-456 (550)
46 PRK03992 proteasome-activating 99.8 1.7E-17 3.7E-22 179.8 20.8 222 274-603 132-355 (389)
47 CHL00176 ftsH cell division pr 99.8 1.4E-17 3E-22 189.8 20.2 221 270-600 181-403 (638)
48 TIGR03689 pup_AAA proteasome A 99.8 1.4E-17 3E-22 184.7 19.5 188 270-548 180-379 (512)
49 COG2255 RuvB Holliday junction 99.8 2.1E-17 4.5E-22 167.8 17.8 190 269-579 23-213 (332)
50 KOG0735 AAA+-type ATPase [Post 99.7 1.9E-17 4E-22 183.4 16.8 216 275-603 669-888 (952)
51 TIGR02974 phageshock_pspF psp 99.7 8.9E-18 1.9E-22 178.2 13.7 199 317-599 14-232 (329)
52 KOG0727 26S proteasome regulat 99.7 2.3E-17 5E-22 164.6 15.4 167 275-487 157-328 (408)
53 PLN00020 ribulose bisphosphate 99.7 3.6E-17 7.9E-22 172.7 15.9 103 324-430 147-250 (413)
54 PTZ00361 26 proteosome regulat 99.7 7.8E-17 1.7E-21 176.3 17.5 180 275-546 185-366 (438)
55 KOG0737 AAA+-type ATPase [Post 99.7 1.1E-16 2.4E-21 167.6 14.0 145 261-432 81-225 (386)
56 KOG2028 ATPase related to the 99.7 1.5E-16 3.2E-21 165.6 14.2 176 326-598 163-342 (554)
57 PRK11608 pspF phage shock prot 99.7 2.4E-16 5.2E-21 167.1 16.3 212 275-599 8-239 (326)
58 TIGR01242 26Sp45 26S proteasom 99.7 3.8E-16 8.2E-21 167.8 18.0 219 274-603 123-346 (364)
59 KOG0652 26S proteasome regulat 99.7 1.6E-16 3.5E-21 159.2 12.4 128 275-429 173-300 (424)
60 TIGR01817 nifA Nif-specific re 99.7 3.3E-16 7.1E-21 176.3 16.4 210 305-598 199-426 (534)
61 PRK14956 DNA polymerase III su 99.7 6.5E-16 1.4E-20 169.6 17.0 188 270-597 16-227 (484)
62 COG1221 PspF Transcriptional r 99.7 2.1E-16 4.5E-21 169.7 12.0 215 306-600 82-309 (403)
63 PRK10733 hflB ATP-dependent me 99.7 2.1E-15 4.6E-20 173.0 20.6 229 263-601 143-373 (644)
64 PRK07003 DNA polymerase III su 99.7 7.5E-16 1.6E-20 175.0 15.5 188 270-597 14-225 (830)
65 KOG0989 Replication factor C, 99.7 1.1E-15 2.5E-20 156.6 15.1 177 268-579 32-220 (346)
66 PRK05022 anaerobic nitric oxid 99.7 7.5E-16 1.6E-20 172.5 14.9 214 304-600 189-420 (509)
67 KOG0729 26S proteasome regulat 99.7 8.8E-16 1.9E-20 154.4 13.1 167 274-486 178-349 (435)
68 PRK11388 DNA-binding transcrip 99.7 1.5E-15 3.2E-20 174.4 16.8 209 306-598 329-552 (638)
69 KOG0726 26S proteasome regulat 99.7 2.8E-16 6.1E-21 159.5 9.3 173 269-488 182-359 (440)
70 KOG0740 AAA+-type ATPase [Post 99.6 1.4E-15 3.1E-20 163.8 14.4 130 273-430 153-282 (428)
71 CHL00206 ycf2 Ycf2; Provisiona 99.6 2E-15 4.3E-20 182.2 16.7 190 323-603 1628-1860(2281)
72 TIGR02329 propionate_PrpR prop 99.6 2.5E-15 5.4E-20 168.2 16.5 216 305-599 215-449 (526)
73 PRK15424 propionate catabolism 99.6 9.8E-16 2.1E-20 171.5 13.2 215 305-598 222-463 (538)
74 TIGR02902 spore_lonB ATP-depen 99.6 2.8E-15 6.1E-20 168.5 16.8 217 271-602 64-314 (531)
75 KOG0732 AAA+-type ATPase conta 99.6 2.5E-15 5.4E-20 174.7 16.6 220 270-601 263-490 (1080)
76 PRK13342 recombination factor 99.6 4.3E-15 9.3E-20 162.3 17.6 165 326-597 37-201 (413)
77 TIGR00635 ruvB Holliday juncti 99.6 9.5E-15 2.1E-19 152.5 19.1 204 270-597 2-206 (305)
78 PRK00080 ruvB Holliday junctio 99.6 1.1E-14 2.4E-19 154.2 19.6 207 270-600 23-230 (328)
79 PRK10820 DNA-binding transcrip 99.6 4.3E-15 9.3E-20 166.8 17.0 208 308-599 210-436 (520)
80 PRK14962 DNA polymerase III su 99.6 4.1E-15 8.9E-20 164.6 16.5 187 271-597 13-223 (472)
81 PRK12323 DNA polymerase III su 99.6 5E-15 1.1E-19 166.5 16.8 185 271-595 15-228 (700)
82 PRK15429 formate hydrogenlyase 99.6 7.9E-15 1.7E-19 169.8 18.3 219 303-598 377-607 (686)
83 KOG0991 Replication factor C, 99.6 3.6E-15 7.8E-20 147.7 12.9 241 262-595 21-280 (333)
84 PRK14960 DNA polymerase III su 99.6 6.2E-15 1.3E-19 166.1 16.0 187 271-597 14-224 (702)
85 PRK14949 DNA polymerase III su 99.6 8.4E-15 1.8E-19 169.2 16.8 194 270-595 14-223 (944)
86 PRK14958 DNA polymerase III su 99.6 7.8E-15 1.7E-19 163.9 15.1 188 270-597 14-225 (509)
87 TIGR01243 CDC48 AAA family ATP 99.6 2.4E-14 5.2E-19 166.9 18.9 132 271-430 177-308 (733)
88 PRK07994 DNA polymerase III su 99.6 1.6E-14 3.4E-19 164.2 16.8 186 270-595 14-223 (647)
89 PRK13341 recombination factor 99.6 2.7E-14 5.9E-19 164.9 18.5 170 326-598 53-223 (725)
90 PLN03025 replication factor C 99.6 1.5E-14 3.2E-19 152.9 14.9 182 275-596 15-204 (319)
91 TIGR02639 ClpA ATP-dependent C 99.6 1.7E-14 3.7E-19 168.0 16.8 191 270-579 180-381 (731)
92 KOG0744 AAA+-type ATPase [Post 99.6 4.2E-15 9.1E-20 153.1 10.1 157 325-552 177-345 (423)
93 PRK07764 DNA polymerase III su 99.6 1.7E-14 3.6E-19 168.5 16.5 193 270-597 13-226 (824)
94 PRK14964 DNA polymerase III su 99.6 3.8E-14 8.3E-19 156.9 17.8 189 270-598 11-223 (491)
95 PRK10923 glnG nitrogen regulat 99.6 3.1E-14 6.7E-19 157.4 15.7 210 305-598 141-369 (469)
96 PF01078 Mg_chelatase: Magnesi 99.6 2E-15 4.3E-20 149.1 5.4 181 275-538 5-206 (206)
97 KOG0742 AAA+-type ATPase [Post 99.6 4.5E-14 9.8E-19 148.9 15.5 190 326-595 385-587 (630)
98 PF00004 AAA: ATPase family as 99.6 1.5E-14 3.1E-19 131.0 10.4 95 328-430 1-95 (132)
99 PRK06645 DNA polymerase III su 99.6 6E-14 1.3E-18 156.3 16.7 193 275-598 23-235 (507)
100 PRK14952 DNA polymerase III su 99.6 8.6E-14 1.9E-18 157.2 18.1 187 270-597 11-224 (584)
101 PRK14951 DNA polymerase III su 99.6 4.6E-14 1E-18 160.1 15.9 187 270-596 14-229 (618)
102 PRK14961 DNA polymerase III su 99.6 8.5E-14 1.8E-18 149.7 17.1 194 270-596 14-224 (363)
103 PRK14957 DNA polymerase III su 99.6 7E-14 1.5E-18 156.7 17.0 188 270-597 14-225 (546)
104 COG2812 DnaX DNA polymerase II 99.5 2.7E-14 5.8E-19 157.9 13.2 193 271-598 15-226 (515)
105 PRK08691 DNA polymerase III su 99.5 4.2E-14 9.1E-19 160.6 14.9 196 270-598 14-226 (709)
106 TIGR02915 PEP_resp_reg putativ 99.5 8.8E-14 1.9E-18 152.7 16.4 211 305-598 142-370 (445)
107 PRK15115 response regulator Gl 99.5 9.1E-14 2E-18 152.5 16.4 209 306-598 138-365 (444)
108 PRK14959 DNA polymerase III su 99.5 7.9E-14 1.7E-18 157.5 15.8 186 270-595 14-223 (624)
109 KOG0651 26S proteasome regulat 99.5 3E-14 6.5E-19 146.2 11.0 128 275-429 134-261 (388)
110 PF00158 Sigma54_activat: Sigm 99.5 2.3E-14 5.1E-19 138.2 9.0 141 310-484 7-162 (168)
111 KOG0741 AAA+-type ATPase [Post 99.5 2.6E-14 5.6E-19 154.6 10.0 120 326-467 257-381 (744)
112 PRK14963 DNA polymerase III su 99.5 3.2E-13 6.9E-18 150.8 17.5 185 275-598 16-223 (504)
113 PRK05563 DNA polymerase III su 99.5 2.6E-13 5.6E-18 153.5 16.6 187 271-597 15-225 (559)
114 PRK14969 DNA polymerase III su 99.5 1.5E-13 3.3E-18 154.3 14.6 196 270-597 14-225 (527)
115 PRK14965 DNA polymerase III su 99.5 2.8E-13 6.1E-18 153.7 16.7 188 270-597 14-225 (576)
116 PRK11361 acetoacetate metaboli 99.5 2.5E-13 5.4E-18 149.4 15.8 210 305-598 146-374 (457)
117 TIGR02640 gas_vesic_GvpN gas v 99.5 6E-13 1.3E-17 137.0 17.4 157 325-545 21-196 (262)
118 TIGR01818 ntrC nitrogen regula 99.5 1.5E-13 3.3E-18 151.5 12.8 210 306-599 138-366 (463)
119 COG3283 TyrR Transcriptional r 99.5 2.6E-13 5.6E-18 141.5 13.4 213 307-599 209-431 (511)
120 COG0714 MoxR-like ATPases [Gen 99.5 1.5E-13 3.3E-18 145.7 11.1 130 263-439 14-147 (329)
121 TIGR00368 Mg chelatase-related 99.5 4.3E-13 9.3E-18 149.4 14.9 236 275-594 194-473 (499)
122 TIGR02442 Cob-chelat-sub cobal 99.5 1E-12 2.2E-17 150.8 17.6 221 275-598 6-282 (633)
123 PRK07940 DNA polymerase III su 99.5 5.3E-13 1.2E-17 144.8 14.4 123 271-430 4-143 (394)
124 PRK14955 DNA polymerase III su 99.5 9.4E-13 2E-17 143.3 16.3 191 275-596 18-232 (397)
125 KOG0730 AAA+-type ATPase [Post 99.5 6.1E-13 1.3E-17 147.8 14.9 129 274-430 185-314 (693)
126 TIGR02903 spore_lon_C ATP-depe 99.5 9.7E-13 2.1E-17 150.4 16.9 195 326-600 176-402 (615)
127 PRK13531 regulatory ATPase Rav 99.5 1.3E-12 2.8E-17 143.5 16.7 232 264-602 11-266 (498)
128 PRK13407 bchI magnesium chelat 99.5 8.6E-13 1.9E-17 140.1 14.8 221 275-597 10-283 (334)
129 PRK08451 DNA polymerase III su 99.5 1.1E-12 2.4E-17 146.5 16.4 189 270-598 12-224 (535)
130 PRK05896 DNA polymerase III su 99.5 8.9E-13 1.9E-17 148.4 15.7 186 271-596 15-224 (605)
131 PRK07133 DNA polymerase III su 99.4 1.3E-12 2.7E-17 149.8 16.8 190 275-596 20-223 (725)
132 PRK09111 DNA polymerase III su 99.4 1.8E-12 3.8E-17 147.3 17.9 193 270-597 22-238 (598)
133 PRK12402 replication factor C 99.4 2.1E-12 4.5E-17 136.2 17.1 195 270-597 13-231 (337)
134 PHA02544 44 clamp loader, smal 99.4 3.4E-12 7.4E-17 134.0 18.5 195 270-596 19-213 (316)
135 PRK06305 DNA polymerase III su 99.4 1.6E-12 3.5E-17 143.6 16.7 193 270-597 15-227 (451)
136 TIGR03345 VI_ClpV1 type VI sec 99.4 1E-12 2.2E-17 154.9 15.6 191 270-579 185-386 (852)
137 CHL00081 chlI Mg-protoporyphyr 99.4 1.9E-12 4.2E-17 138.0 16.2 218 275-595 19-297 (350)
138 PRK14948 DNA polymerase III su 99.4 1.8E-12 3.9E-17 148.0 17.0 194 270-596 14-226 (620)
139 PRK06647 DNA polymerase III su 99.4 2.6E-12 5.6E-17 145.2 18.1 192 275-597 18-225 (563)
140 smart00350 MCM minichromosome 99.4 2.4E-12 5.1E-17 144.4 16.4 252 266-600 196-484 (509)
141 TIGR01650 PD_CobS cobaltochela 99.4 9.7E-13 2.1E-17 138.6 12.5 160 326-545 65-231 (327)
142 PRK14954 DNA polymerase III su 99.4 3.7E-12 8E-17 145.0 18.1 191 275-596 18-232 (620)
143 TIGR02030 BchI-ChlI magnesium 99.4 1.9E-12 4.1E-17 137.8 14.7 225 275-601 6-290 (337)
144 COG3284 AcoR Transcriptional a 99.4 4.8E-13 1E-17 148.7 10.5 213 306-597 317-537 (606)
145 PRK10365 transcriptional regul 99.4 3.1E-12 6.8E-17 140.0 16.6 211 305-598 142-370 (441)
146 PRK14970 DNA polymerase III su 99.4 2.6E-12 5.7E-17 138.0 15.7 193 270-597 15-214 (367)
147 PRK11034 clpA ATP-dependent Cl 99.4 3.7E-12 8E-17 148.1 17.6 186 275-578 188-384 (758)
148 TIGR02397 dnaX_nterm DNA polym 99.4 7E-12 1.5E-16 133.4 18.2 195 271-597 13-223 (355)
149 PRK14953 DNA polymerase III su 99.4 6.3E-12 1.4E-16 139.9 18.5 192 271-597 15-225 (486)
150 COG0606 Predicted ATPase with 99.4 5.7E-13 1.2E-17 144.3 9.2 180 275-539 181-384 (490)
151 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.5E-12 1.4E-16 125.1 15.9 166 326-600 39-209 (226)
152 PRK04195 replication factor C 99.4 6E-12 1.3E-16 140.3 17.2 113 271-429 13-127 (482)
153 PRK14950 DNA polymerase III su 99.4 8.5E-12 1.8E-16 142.1 17.8 191 271-596 15-225 (585)
154 PRK14971 DNA polymerase III su 99.4 6.2E-12 1.3E-16 143.6 16.6 194 271-596 16-226 (614)
155 CHL00095 clpC Clp protease ATP 99.4 9.2E-12 2E-16 147.0 18.4 186 275-579 181-377 (821)
156 PRK08903 DnaA regulatory inact 99.4 1E-11 2.2E-16 124.6 15.5 161 326-601 43-208 (227)
157 KOG0743 AAA+-type ATPase [Post 99.4 4.7E-12 1E-16 136.2 13.1 170 325-578 235-416 (457)
158 PF07726 AAA_3: ATPase family 99.3 1.8E-13 3.9E-18 125.5 0.2 94 327-437 1-95 (131)
159 PRK10865 protein disaggregatio 99.3 2E-11 4.4E-16 144.3 16.2 166 270-545 176-352 (857)
160 PRK00440 rfc replication facto 99.3 3.5E-11 7.6E-16 125.8 15.9 188 270-597 15-208 (319)
161 PF06068 TIP49: TIP49 C-termin 99.3 6.8E-12 1.5E-16 132.8 10.4 63 274-362 25-89 (398)
162 TIGR03346 chaperone_ClpB ATP-d 99.3 3.5E-11 7.6E-16 142.5 17.5 190 270-578 171-371 (852)
163 PHA02244 ATPase-like protein 99.3 4.6E-11 1E-15 127.4 16.5 204 306-577 100-305 (383)
164 PRK14086 dnaA chromosomal repl 99.3 1.9E-10 4E-15 130.0 22.0 176 326-601 315-497 (617)
165 COG1224 TIP49 DNA helicase TIP 99.3 5.3E-11 1.1E-15 124.5 16.1 63 274-362 40-104 (450)
166 PRK08084 DNA replication initi 99.3 4.2E-11 9E-16 121.4 15.0 70 517-602 148-219 (235)
167 PTZ00111 DNA replication licen 99.3 2E-11 4.3E-16 142.0 13.6 157 267-464 444-609 (915)
168 TIGR02031 BchD-ChlD magnesium 99.3 3.2E-11 7E-16 137.3 14.6 200 326-594 17-232 (589)
169 PRK00411 cdc6 cell division co 99.3 1.3E-10 2.8E-15 125.6 18.3 212 273-601 30-263 (394)
170 TIGR02928 orc1/cdc6 family rep 99.3 7.9E-11 1.7E-15 125.9 16.2 212 274-601 16-255 (365)
171 PTZ00112 origin recognition co 99.3 9.2E-11 2E-15 134.7 17.1 206 273-598 755-987 (1164)
172 TIGR00764 lon_rel lon-related 99.2 4.9E-11 1.1E-15 136.2 13.5 50 269-351 14-63 (608)
173 PF07728 AAA_5: AAA domain (dy 99.2 1.8E-12 4E-17 119.8 1.1 121 327-465 1-124 (139)
174 PRK09112 DNA polymerase III su 99.2 2.4E-10 5.3E-15 122.5 17.1 163 262-545 17-211 (351)
175 PRK08727 hypothetical protein; 99.2 3.6E-10 7.8E-15 114.5 16.6 168 326-602 42-214 (233)
176 PRK06893 DNA replication initi 99.2 1.1E-10 2.3E-15 118.0 12.6 169 326-602 40-213 (229)
177 KOG2170 ATPase of the AAA+ sup 99.2 7.1E-10 1.5E-14 114.1 16.6 232 262-578 71-318 (344)
178 KOG1969 DNA replication checkp 99.2 8.5E-10 1.8E-14 124.0 18.5 137 275-429 273-412 (877)
179 PRK00149 dnaA chromosomal repl 99.2 1.1E-10 2.3E-15 129.2 11.4 176 326-601 149-331 (450)
180 PRK09862 putative ATP-dependen 99.2 4.7E-10 1E-14 125.0 15.8 237 275-595 193-467 (506)
181 TIGR00678 holB DNA polymerase 99.1 4.1E-10 8.8E-15 109.8 12.3 150 326-579 15-181 (188)
182 TIGR00362 DnaA chromosomal rep 99.1 6.7E-10 1.5E-14 121.2 15.1 176 326-601 137-319 (405)
183 PRK05642 DNA replication initi 99.1 7.9E-10 1.7E-14 112.1 14.2 168 326-602 46-218 (234)
184 PF14532 Sigma54_activ_2: Sigm 99.1 3E-11 6.6E-16 112.2 3.2 91 306-430 2-95 (138)
185 COG1239 ChlI Mg-chelatase subu 99.1 7.6E-10 1.6E-14 118.8 13.7 212 270-582 14-283 (423)
186 PRK05564 DNA polymerase III su 99.1 1E-09 2.2E-14 115.7 14.3 109 271-430 3-119 (313)
187 PRK07471 DNA polymerase III su 99.1 7.7E-10 1.7E-14 119.2 13.5 119 262-430 13-167 (365)
188 PRK13406 bchD magnesium chelat 99.1 1.2E-09 2.6E-14 124.0 15.1 196 326-596 26-226 (584)
189 PRK07399 DNA polymerase III su 99.1 2.5E-09 5.3E-14 113.2 16.4 155 275-546 6-194 (314)
190 PRK14088 dnaA chromosomal repl 99.1 1.6E-09 3.4E-14 119.6 15.1 177 326-601 131-314 (440)
191 PF05673 DUF815: Protein of un 99.1 4.2E-09 9.1E-14 106.7 16.7 174 275-546 29-206 (249)
192 COG0470 HolB ATPase involved i 99.1 1.2E-09 2.7E-14 114.1 13.3 87 326-430 24-135 (325)
193 PRK08058 DNA polymerase III su 99.1 8.4E-10 1.8E-14 117.4 12.1 112 275-430 7-136 (329)
194 cd00009 AAA The AAA+ (ATPases 99.1 1E-09 2.2E-14 99.0 11.0 87 326-430 20-110 (151)
195 PF00308 Bac_DnaA: Bacterial d 99.1 1.2E-09 2.5E-14 109.8 12.0 175 326-600 35-216 (219)
196 KOG1942 DNA helicase, TBP-inte 99.0 6.3E-09 1.4E-13 106.7 16.6 62 514-594 348-409 (456)
197 PRK04132 replication factor C 99.0 1.6E-09 3.4E-14 126.8 13.5 166 323-597 562-736 (846)
198 PRK13765 ATP-dependent proteas 99.0 1.1E-09 2.4E-14 125.2 11.7 48 270-350 28-75 (637)
199 PF13177 DNA_pol3_delta2: DNA 99.0 1.6E-09 3.5E-14 103.8 10.8 109 277-430 1-128 (162)
200 PRK12422 chromosomal replicati 99.0 3.8E-09 8.2E-14 116.7 15.0 172 326-597 142-318 (445)
201 PRK06620 hypothetical protein; 99.0 5.5E-09 1.2E-13 104.7 13.2 66 519-600 130-197 (214)
202 COG1241 MCM2 Predicted ATPase 99.0 2.2E-09 4.8E-14 122.4 11.6 248 267-594 280-566 (682)
203 PRK14087 dnaA chromosomal repl 99.0 4.6E-09 9.9E-14 116.3 13.6 181 326-602 142-329 (450)
204 COG1474 CDC6 Cdc6-related prot 99.0 1.1E-08 2.3E-13 110.5 15.9 185 325-601 42-246 (366)
205 KOG0735 AAA+-type ATPase [Post 98.9 9.9E-09 2.2E-13 115.1 14.3 191 323-602 429-626 (952)
206 COG0542 clpA ATP-binding subun 98.9 1.7E-08 3.7E-13 116.3 16.0 192 268-578 166-368 (786)
207 smart00763 AAA_PrkA PrkA AAA d 98.9 1.2E-08 2.6E-13 108.9 13.2 63 271-358 49-118 (361)
208 PRK05707 DNA polymerase III su 98.9 6.7E-09 1.4E-13 110.5 10.9 88 326-430 23-132 (328)
209 PRK09087 hypothetical protein; 98.9 9.6E-09 2.1E-13 103.8 11.1 69 518-602 135-205 (226)
210 KOG0480 DNA replication licens 98.9 3E-08 6.5E-13 110.3 14.6 253 267-602 339-623 (764)
211 TIGR03015 pepcterm_ATPase puta 98.8 1.3E-07 2.7E-12 96.8 17.7 71 520-602 178-248 (269)
212 KOG0478 DNA replication licens 98.8 2E-08 4.3E-13 112.4 11.4 231 267-578 423-672 (804)
213 PRK11331 5-methylcytosine-spec 98.8 1E-07 2.3E-12 104.4 15.1 124 325-466 194-336 (459)
214 PF00493 MCM: MCM2/3/5 family 98.8 3.1E-09 6.7E-14 113.2 2.5 156 267-464 18-173 (331)
215 TIGR00602 rad24 checkpoint pro 98.8 2.1E-07 4.6E-12 106.5 17.5 59 270-355 82-140 (637)
216 PRK06871 DNA polymerase III su 98.7 8.1E-08 1.8E-12 102.0 13.0 88 326-430 25-133 (325)
217 PRK08769 DNA polymerase III su 98.7 9.4E-08 2E-12 101.3 12.9 91 326-430 27-139 (319)
218 KOG2035 Replication factor C, 98.7 1.1E-07 2.3E-12 97.3 12.4 163 326-593 35-226 (351)
219 COG2607 Predicted ATPase (AAA+ 98.7 1.6E-07 3.4E-12 94.5 13.1 173 275-546 62-238 (287)
220 smart00382 AAA ATPases associa 98.7 6.5E-08 1.4E-12 86.1 9.5 76 326-405 3-93 (148)
221 KOG2680 DNA helicase TIP49, TB 98.7 3.5E-07 7.6E-12 94.3 15.2 52 514-579 339-390 (454)
222 PRK06964 DNA polymerase III su 98.7 1.4E-07 3.1E-12 100.8 12.5 91 325-430 21-158 (342)
223 COG4650 RtcR Sigma54-dependent 98.7 3.7E-08 8.1E-13 101.1 6.9 87 325-433 208-311 (531)
224 KOG0990 Replication factor C, 98.6 2.4E-07 5.1E-12 96.5 10.7 91 326-430 63-157 (360)
225 PRK06090 DNA polymerase III su 98.6 5.2E-07 1.1E-11 95.7 13.1 91 326-430 26-134 (319)
226 PRK07993 DNA polymerase III su 98.6 4.6E-07 9.9E-12 96.8 12.0 88 326-430 25-134 (334)
227 KOG0736 Peroxisome assembly fa 98.6 6.4E-07 1.4E-11 101.8 13.6 148 326-550 432-579 (953)
228 PRK08699 DNA polymerase III su 98.5 9.8E-07 2.1E-11 93.9 13.0 90 326-430 22-139 (325)
229 PF05621 TniB: Bacterial TniB 98.5 3.7E-06 7.9E-11 87.9 16.4 117 264-405 25-160 (302)
230 COG0593 DnaA ATPase involved i 98.4 2.6E-06 5.7E-11 92.6 14.2 172 326-602 114-296 (408)
231 PRK12377 putative replication 98.4 6.2E-07 1.3E-11 91.9 8.6 85 326-431 102-192 (248)
232 KOG0741 AAA+-type ATPase [Post 98.4 6.6E-06 1.4E-10 90.5 16.8 92 326-429 539-633 (744)
233 KOG2227 Pre-initiation complex 98.4 3.6E-06 7.8E-11 91.6 13.4 207 275-598 152-377 (529)
234 KOG0477 DNA replication licens 98.4 2.8E-07 6.1E-12 102.3 4.9 138 267-439 443-581 (854)
235 PF13173 AAA_14: AAA domain 98.3 2.3E-06 5E-11 78.5 9.5 70 326-403 3-74 (128)
236 PRK08116 hypothetical protein; 98.3 3.5E-06 7.6E-11 87.4 11.9 86 326-430 115-206 (268)
237 PF12774 AAA_6: Hydrolytic ATP 98.3 6.7E-06 1.5E-10 83.5 13.0 67 326-405 33-99 (231)
238 PF13401 AAA_22: AAA domain; P 98.3 1.2E-06 2.7E-11 79.3 6.4 86 326-429 5-113 (131)
239 PF06309 Torsin: Torsin; Inte 98.3 6E-06 1.3E-10 76.0 10.7 64 262-349 14-77 (127)
240 PF01637 Arch_ATPase: Archaeal 98.3 9.8E-06 2.1E-10 79.8 12.4 48 518-578 176-223 (234)
241 PF10431 ClpB_D2-small: C-term 98.2 1.7E-06 3.6E-11 73.4 5.6 66 534-603 1-66 (81)
242 KOG1514 Origin recognition com 98.2 1E-05 2.2E-10 91.7 12.7 180 326-598 423-626 (767)
243 PRK05917 DNA polymerase III su 98.2 1.2E-05 2.6E-10 84.1 12.5 90 326-430 20-121 (290)
244 PRK06526 transposase; Provisio 98.2 1.6E-06 3.5E-11 89.2 5.6 86 325-429 98-186 (254)
245 PRK07276 DNA polymerase III su 98.2 1.3E-05 2.9E-10 83.9 12.5 89 326-430 25-130 (290)
246 KOG0482 DNA replication licens 98.2 9.3E-07 2E-11 96.4 3.7 137 265-439 334-474 (721)
247 KOG0481 DNA replication licens 98.2 4.8E-07 1E-11 98.7 1.5 139 267-440 325-464 (729)
248 COG5271 MDN1 AAA ATPase contai 98.2 3.6E-06 7.7E-11 101.0 8.1 156 325-548 1543-1704(4600)
249 COG5271 MDN1 AAA ATPase contai 98.2 1.3E-05 2.7E-10 96.5 12.0 162 314-545 877-1045(4600)
250 PRK07132 DNA polymerase III su 98.1 2.8E-05 6.1E-10 81.9 12.5 88 326-430 19-116 (299)
251 PRK08181 transposase; Validate 98.1 5.3E-06 1.2E-10 86.1 6.5 88 324-430 105-195 (269)
252 PRK07952 DNA replication prote 98.1 2.5E-05 5.4E-10 80.0 11.3 86 326-430 100-190 (244)
253 KOG0479 DNA replication licens 98.0 8.3E-05 1.8E-09 82.7 15.1 129 268-439 296-433 (818)
254 PF03215 Rad17: Rad17 cell cyc 98.0 6.2E-05 1.3E-09 84.9 13.7 30 326-355 46-75 (519)
255 PF12775 AAA_7: P-loop contain 97.9 2.9E-05 6.3E-10 80.7 7.7 199 326-600 34-255 (272)
256 PF01695 IstB_IS21: IstB-like 97.9 1.6E-05 3.6E-10 77.5 5.5 83 326-430 48-136 (178)
257 COG1484 DnaC DNA replication p 97.9 3.4E-05 7.3E-10 79.5 7.8 71 325-405 105-182 (254)
258 PRK05818 DNA polymerase III su 97.8 0.0001 2.2E-09 75.9 10.8 91 325-430 7-114 (261)
259 PRK09183 transposase/IS protei 97.8 2.3E-05 5.1E-10 80.8 6.2 88 325-430 102-192 (259)
260 PF07693 KAP_NTPase: KAP famil 97.8 0.00022 4.9E-09 74.9 13.1 26 325-350 20-45 (325)
261 PF05729 NACHT: NACHT domain 97.8 0.00024 5.1E-09 66.3 11.3 23 327-349 2-24 (166)
262 PRK06921 hypothetical protein; 97.8 0.00011 2.3E-09 76.3 9.4 37 326-362 118-158 (266)
263 PF00910 RNA_helicase: RNA hel 97.8 8.3E-05 1.8E-09 66.3 7.5 23 328-350 1-23 (107)
264 PRK08939 primosomal protein Dn 97.7 4.6E-05 9.9E-10 80.6 6.4 67 326-402 157-229 (306)
265 PRK06835 DNA replication prote 97.7 0.0001 2.2E-09 78.7 8.6 86 326-430 184-274 (329)
266 KOG3347 Predicted nucleotide k 97.7 0.0001 2.2E-09 69.6 7.2 33 325-357 7-39 (176)
267 TIGR02688 conserved hypothetic 97.6 0.00025 5.4E-09 77.6 9.6 81 325-433 209-293 (449)
268 KOG2543 Origin recognition com 97.6 0.0017 3.6E-08 69.8 15.0 64 271-362 4-67 (438)
269 PF03969 AFG1_ATPase: AFG1-lik 97.5 0.0005 1.1E-08 74.4 10.9 29 323-351 60-88 (362)
270 COG0464 SpoVK ATPases of the A 97.5 0.00016 3.5E-09 81.1 7.3 97 324-430 17-113 (494)
271 PF13207 AAA_17: AAA domain; P 97.5 7.8E-05 1.7E-09 66.8 3.7 31 328-358 2-32 (121)
272 PF13191 AAA_16: AAA ATPase do 97.4 0.00023 5E-09 68.0 5.9 25 325-349 24-48 (185)
273 cd01120 RecA-like_NTPases RecA 97.4 0.0003 6.4E-09 65.1 6.2 32 327-358 1-35 (165)
274 PHA02624 large T antigen; Prov 97.4 0.0007 1.5E-08 76.9 9.9 93 325-438 431-524 (647)
275 COG3267 ExeA Type II secretory 97.4 0.0049 1.1E-07 63.1 15.0 67 519-602 185-251 (269)
276 PF13604 AAA_30: AAA domain; P 97.3 0.00056 1.2E-08 67.6 7.6 87 326-429 19-118 (196)
277 COG0283 Cmk Cytidylate kinase 97.3 0.00029 6.4E-09 70.3 5.5 116 326-456 5-130 (222)
278 PHA00729 NTP-binding motif con 97.3 0.00038 8.3E-09 70.4 6.5 25 326-350 18-42 (226)
279 PRK00131 aroK shikimate kinase 97.3 0.0002 4.3E-09 67.9 4.2 33 325-357 4-36 (175)
280 PRK00771 signal recognition pa 97.3 0.033 7.1E-07 61.9 22.1 26 324-349 94-119 (437)
281 PRK08118 topology modulation p 97.3 0.00063 1.4E-08 65.6 7.1 43 327-370 3-45 (167)
282 TIGR03574 selen_PSTK L-seryl-t 97.3 0.0092 2E-07 60.9 15.7 34 328-361 2-38 (249)
283 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0047 1E-07 69.0 13.9 32 326-357 111-142 (634)
284 PRK13477 bifunctional pantoate 97.2 0.0062 1.4E-07 68.7 15.2 125 322-460 281-417 (512)
285 PRK11860 bifunctional 3-phosph 97.2 0.0028 6.1E-08 73.9 12.9 118 326-460 443-570 (661)
286 PRK07261 topology modulation p 97.2 0.00074 1.6E-08 65.3 6.6 43 327-370 2-44 (171)
287 PRK13947 shikimate kinase; Pro 97.2 0.00032 6.9E-09 66.9 3.9 33 326-358 2-34 (171)
288 PHA02774 E1; Provisional 97.1 0.0013 2.9E-08 74.3 8.7 79 326-438 435-514 (613)
289 PRK15455 PrkA family serine pr 97.1 0.00055 1.2E-08 77.4 5.5 59 274-357 77-136 (644)
290 PRK03839 putative kinase; Prov 97.1 0.00042 9.2E-09 66.9 3.8 31 327-357 2-32 (180)
291 TIGR01425 SRP54_euk signal rec 97.1 0.079 1.7E-06 58.7 21.7 34 325-358 100-136 (429)
292 COG1618 Predicted nucleotide k 97.1 0.0038 8.3E-08 59.9 9.9 24 326-349 6-29 (179)
293 PRK10536 hypothetical protein; 97.1 0.0034 7.4E-08 64.8 10.3 23 326-348 75-97 (262)
294 cd00464 SK Shikimate kinase (S 97.1 0.00051 1.1E-08 64.0 3.9 31 327-357 1-31 (154)
295 PRK00625 shikimate kinase; Pro 97.0 0.00051 1.1E-08 66.8 3.9 32 327-358 2-33 (173)
296 PRK04296 thymidine kinase; Pro 97.0 0.0021 4.6E-08 63.2 8.3 24 326-349 3-26 (190)
297 TIGR01618 phage_P_loop phage n 97.0 0.00091 2E-08 67.6 5.2 22 325-346 12-33 (220)
298 PRK09376 rho transcription ter 97.0 0.0011 2.4E-08 72.0 6.1 81 326-407 170-273 (416)
299 COG0703 AroK Shikimate kinase 97.0 0.00064 1.4E-08 66.0 3.7 34 326-359 3-36 (172)
300 TIGR00017 cmk cytidylate kinas 97.0 0.0024 5.3E-08 64.3 7.9 102 326-429 3-115 (217)
301 cd01128 rho_factor Transcripti 97.0 0.0013 2.9E-08 67.6 6.1 82 326-407 17-120 (249)
302 PF13671 AAA_33: AAA domain; P 97.0 0.00055 1.2E-08 62.9 3.0 30 328-357 2-31 (143)
303 KOG1808 AAA ATPase containing 96.9 0.0011 2.4E-08 82.9 6.3 114 326-456 441-560 (1856)
304 PF13521 AAA_28: AAA domain; P 96.9 0.0024 5.1E-08 60.7 7.2 35 328-363 2-36 (163)
305 PRK06217 hypothetical protein; 96.9 0.00076 1.7E-08 65.6 3.8 32 327-358 3-34 (183)
306 PRK14532 adenylate kinase; Pro 96.9 0.00076 1.7E-08 65.5 3.7 30 327-356 2-31 (188)
307 PRK09518 bifunctional cytidyla 96.9 0.008 1.7E-07 70.7 12.7 205 327-553 3-235 (712)
308 PRK13948 shikimate kinase; Pro 96.9 0.001 2.2E-08 65.3 4.4 35 324-358 9-43 (182)
309 PRK13949 shikimate kinase; Pro 96.9 0.00086 1.9E-08 64.8 3.8 33 326-358 2-34 (169)
310 PRK14974 cell division protein 96.9 0.012 2.5E-07 63.3 12.7 25 325-349 140-164 (336)
311 cd02020 CMPK Cytidine monophos 96.9 0.00097 2.1E-08 61.4 3.8 30 328-357 2-31 (147)
312 PRK06762 hypothetical protein; 96.8 0.0016 3.5E-08 61.9 5.3 36 326-361 3-38 (166)
313 PRK14530 adenylate kinase; Pro 96.8 0.001 2.3E-08 66.3 4.2 31 326-356 4-34 (215)
314 PF03266 NTPase_1: NTPase; In 96.8 0.0013 2.8E-08 63.6 4.5 23 327-349 1-23 (168)
315 PRK14531 adenylate kinase; Pro 96.8 0.0011 2.5E-08 64.5 4.1 30 326-355 3-32 (183)
316 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.001 2.2E-08 64.1 3.8 29 328-356 2-30 (183)
317 PRK13946 shikimate kinase; Pro 96.8 0.0013 2.8E-08 64.1 4.1 34 325-358 10-43 (184)
318 cd01124 KaiC KaiC is a circadi 96.8 0.0034 7.3E-08 60.4 6.9 30 328-357 2-34 (187)
319 cd02021 GntK Gluconate kinase 96.7 0.0012 2.6E-08 61.6 3.6 30 328-357 2-31 (150)
320 PF14516 AAA_35: AAA-like doma 96.7 0.026 5.7E-07 60.4 14.2 36 326-361 32-70 (331)
321 cd01428 ADK Adenylate kinase ( 96.7 0.0013 2.7E-08 63.8 3.8 29 328-356 2-30 (194)
322 PRK03731 aroL shikimate kinase 96.7 0.0017 3.6E-08 62.1 4.0 34 326-359 3-36 (171)
323 cd00227 CPT Chloramphenicol (C 96.7 0.0016 3.6E-08 62.7 4.0 34 326-359 3-36 (175)
324 TIGR01313 therm_gnt_kin carboh 96.7 0.0014 2.9E-08 62.2 3.3 30 328-357 1-30 (163)
325 COG1373 Predicted ATPase (AAA+ 96.7 0.011 2.3E-07 65.0 10.6 68 327-402 39-106 (398)
326 TIGR00767 rho transcription te 96.7 0.0031 6.8E-08 68.8 6.4 80 326-405 169-270 (415)
327 PRK05057 aroK shikimate kinase 96.6 0.0018 4E-08 62.6 4.1 33 326-358 5-37 (172)
328 cd02027 APSK Adenosine 5'-phos 96.6 0.0068 1.5E-07 57.2 7.7 33 328-360 2-37 (149)
329 COG1102 Cmk Cytidylate kinase 96.6 0.0016 3.4E-08 62.5 3.2 29 327-355 2-30 (179)
330 PRK08154 anaerobic benzoate ca 96.6 0.0036 7.7E-08 66.3 6.1 34 325-358 133-166 (309)
331 PTZ00088 adenylate kinase 1; P 96.6 0.0021 4.5E-08 65.3 4.1 32 326-357 7-38 (229)
332 PF00931 NB-ARC: NB-ARC domain 96.5 0.0091 2E-07 61.4 8.5 23 326-348 20-42 (287)
333 PF05272 VirE: Virulence-assoc 96.5 0.017 3.8E-07 57.4 10.1 98 326-465 53-150 (198)
334 PRK12269 bifunctional cytidyla 96.5 0.0051 1.1E-07 73.3 7.2 32 326-357 35-66 (863)
335 PRK10867 signal recognition pa 96.5 0.56 1.2E-05 52.2 22.6 35 325-359 100-138 (433)
336 PRK14528 adenylate kinase; Pro 96.5 0.0026 5.6E-08 62.3 3.9 31 326-356 2-32 (186)
337 PRK06547 hypothetical protein; 96.5 0.0025 5.5E-08 61.9 3.8 32 326-357 16-47 (172)
338 PF01583 APS_kinase: Adenylyls 96.5 0.0067 1.5E-07 58.1 6.6 37 326-362 3-42 (156)
339 PRK06581 DNA polymerase III su 96.4 0.065 1.4E-06 54.9 13.9 88 326-430 16-115 (263)
340 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0026 5.6E-08 61.2 3.7 30 326-355 4-33 (188)
341 PRK02496 adk adenylate kinase; 96.4 0.0028 6E-08 61.5 3.7 30 327-356 3-32 (184)
342 PF09848 DUF2075: Uncharacteri 96.4 0.0092 2E-07 64.2 7.8 24 326-349 2-25 (352)
343 COG0572 Udk Uridine kinase [Nu 96.3 0.022 4.7E-07 57.4 9.7 29 326-354 9-37 (218)
344 PF13238 AAA_18: AAA domain; P 96.3 0.0028 6.1E-08 56.6 3.1 22 328-349 1-22 (129)
345 PRK12723 flagellar biosynthesi 96.3 0.031 6.8E-07 61.1 11.7 25 325-349 174-198 (388)
346 COG1936 Predicted nucleotide k 96.3 0.0032 7E-08 61.0 3.5 30 327-357 2-31 (180)
347 PLN02200 adenylate kinase fami 96.3 0.0037 8E-08 63.7 4.0 36 325-362 43-78 (234)
348 PRK00279 adk adenylate kinase; 96.3 0.0036 7.9E-08 62.4 3.9 30 327-356 2-31 (215)
349 TIGR01351 adk adenylate kinase 96.3 0.0035 7.6E-08 62.3 3.7 29 328-356 2-30 (210)
350 COG0563 Adk Adenylate kinase a 96.3 0.0038 8.2E-08 61.1 3.8 34 327-362 2-35 (178)
351 cd01131 PilT Pilus retraction 96.3 0.006 1.3E-07 60.3 5.3 25 326-350 2-26 (198)
352 PF08433 KTI12: Chromatin asso 96.3 0.012 2.6E-07 61.3 7.7 76 328-404 4-84 (270)
353 TIGR01526 nadR_NMN_Atrans nico 96.2 0.01 2.2E-07 63.4 7.3 38 326-363 163-200 (325)
354 TIGR02237 recomb_radB DNA repa 96.2 0.01 2.2E-07 58.6 6.8 34 326-359 13-49 (209)
355 PRK13695 putative NTPase; Prov 96.2 0.072 1.6E-06 51.2 12.5 23 327-349 2-24 (174)
356 PF10443 RNA12: RNA12 protein; 96.2 0.1 2.2E-06 57.5 14.8 35 326-362 18-54 (431)
357 PRK14730 coaE dephospho-CoA ki 96.2 0.025 5.4E-07 55.9 9.4 31 327-357 3-33 (195)
358 PRK05480 uridine/cytidine kina 96.2 0.037 8.1E-07 54.7 10.5 26 325-350 6-31 (209)
359 TIGR01613 primase_Cterm phage/ 96.2 0.12 2.7E-06 54.4 15.1 64 266-354 42-105 (304)
360 PTZ00301 uridine kinase; Provi 96.2 0.009 1.9E-07 59.9 6.1 25 326-350 4-28 (210)
361 KOG1051 Chaperone HSP104 and r 96.2 0.023 5.1E-07 67.5 10.4 76 326-405 209-295 (898)
362 PRK09361 radB DNA repair and r 96.2 0.0094 2E-07 59.6 6.3 34 326-359 24-60 (225)
363 PRK06696 uridine kinase; Valid 96.2 0.0088 1.9E-07 60.1 6.0 37 326-362 23-62 (223)
364 PRK14527 adenylate kinase; Pro 96.2 0.0046 1E-07 60.5 3.8 31 326-356 7-37 (191)
365 TIGR01448 recD_rel helicase, p 96.1 0.019 4E-07 67.7 9.4 87 326-429 339-441 (720)
366 KOG1968 Replication factor C, 96.1 0.0097 2.1E-07 70.8 6.7 90 327-429 359-456 (871)
367 PRK14722 flhF flagellar biosyn 96.1 0.052 1.1E-06 59.1 11.8 25 325-349 137-161 (374)
368 PRK04040 adenylate kinase; Pro 96.1 0.0053 1.1E-07 60.4 3.8 29 326-354 3-33 (188)
369 PRK04182 cytidylate kinase; Pr 96.1 0.0052 1.1E-07 58.6 3.6 29 327-355 2-30 (180)
370 TIGR00959 ffh signal recogniti 96.1 0.99 2.1E-05 50.2 21.8 35 325-359 99-137 (428)
371 cd01121 Sms Sms (bacterial rad 96.1 0.015 3.2E-07 63.4 7.4 33 326-358 83-118 (372)
372 PF00448 SRP54: SRP54-type pro 96.0 0.024 5.2E-07 56.2 8.3 24 326-349 2-25 (196)
373 TIGR02173 cyt_kin_arch cytidyl 96.0 0.0054 1.2E-07 58.1 3.5 30 327-356 2-31 (171)
374 PHA02530 pseT polynucleotide k 96.0 0.0057 1.2E-07 63.8 3.7 32 326-357 3-35 (300)
375 PF12780 AAA_8: P-loop contain 96.0 0.031 6.7E-07 58.2 9.0 70 325-401 31-100 (268)
376 PRK06067 flagellar accessory p 96.0 0.018 3.8E-07 58.2 7.0 24 325-348 25-48 (234)
377 PF13245 AAA_19: Part of AAA d 95.9 0.009 1.9E-07 50.3 4.0 24 326-349 11-35 (76)
378 TIGR02012 tigrfam_recA protein 95.9 0.014 3E-07 62.3 6.4 80 326-405 56-148 (321)
379 PRK11823 DNA repair protein Ra 95.9 0.017 3.7E-07 64.4 7.4 34 326-359 81-117 (446)
380 PRK03846 adenylylsulfate kinas 95.9 0.029 6.3E-07 55.3 8.3 35 325-359 24-61 (198)
381 KOG3354 Gluconate kinase [Carb 95.9 0.0075 1.6E-07 57.6 3.8 34 324-357 11-44 (191)
382 PF00406 ADK: Adenylate kinase 95.9 0.0058 1.3E-07 57.4 3.1 31 330-362 1-31 (151)
383 PLN02674 adenylate kinase 95.9 0.0073 1.6E-07 62.0 4.0 29 326-354 32-60 (244)
384 PF05970 PIF1: PIF1-like helic 95.9 0.018 4E-07 62.3 7.3 26 325-350 22-47 (364)
385 TIGR03499 FlhF flagellar biosy 95.9 0.044 9.6E-07 57.3 9.9 25 325-349 194-218 (282)
386 COG3854 SpoIIIAA ncharacterize 95.9 0.015 3.3E-07 58.9 6.0 77 326-402 138-230 (308)
387 COG1125 OpuBA ABC-type proline 95.9 0.044 9.4E-07 56.5 9.3 24 326-349 28-51 (309)
388 PHA01747 putative ATP-dependen 95.9 0.028 6E-07 60.6 8.2 86 324-434 189-276 (425)
389 PLN02199 shikimate kinase 95.9 0.0081 1.8E-07 63.2 4.2 33 326-358 103-135 (303)
390 PRK14526 adenylate kinase; Pro 95.8 0.0076 1.6E-07 60.5 3.8 29 327-355 2-30 (211)
391 PRK01184 hypothetical protein; 95.8 0.0075 1.6E-07 58.4 3.6 30 326-356 2-31 (184)
392 smart00487 DEXDc DEAD-like hel 95.8 0.031 6.6E-07 52.6 7.6 24 326-349 25-49 (201)
393 cd02019 NK Nucleoside/nucleoti 95.8 0.0084 1.8E-07 49.2 3.2 22 328-349 2-23 (69)
394 COG0529 CysC Adenylylsulfate k 95.8 0.031 6.7E-07 54.6 7.4 37 326-362 24-63 (197)
395 PRK12608 transcription termina 95.8 0.014 3.1E-07 63.2 5.7 104 326-429 134-264 (380)
396 PRK04220 2-phosphoglycerate ki 95.8 0.023 5E-07 60.0 7.1 29 325-353 92-120 (301)
397 TIGR02768 TraA_Ti Ti-type conj 95.7 0.037 8E-07 65.5 9.5 87 326-429 369-464 (744)
398 PRK00889 adenylylsulfate kinas 95.7 0.031 6.8E-07 53.6 7.4 34 326-359 5-41 (175)
399 PRK10078 ribose 1,5-bisphospho 95.7 0.0084 1.8E-07 58.5 3.4 30 326-355 3-32 (186)
400 PRK08233 hypothetical protein; 95.7 0.0096 2.1E-07 57.0 3.7 32 326-357 4-36 (182)
401 TIGR00150 HI0065_YjeE ATPase, 95.7 0.022 4.9E-07 53.1 5.9 27 326-352 23-49 (133)
402 PRK14529 adenylate kinase; Pro 95.6 0.0093 2E-07 60.4 3.5 28 327-354 2-29 (223)
403 PRK05800 cobU adenosylcobinami 95.6 0.019 4.1E-07 55.7 5.5 34 327-360 3-36 (170)
404 PRK08099 bifunctional DNA-bind 95.6 0.027 5.9E-07 61.9 7.2 30 326-355 220-249 (399)
405 PF13479 AAA_24: AAA domain 95.6 0.017 3.7E-07 57.7 5.3 20 326-345 4-23 (213)
406 PRK13889 conjugal transfer rel 95.6 0.032 6.8E-07 67.6 8.3 88 326-429 363-458 (988)
407 smart00534 MUTSac ATPase domai 95.6 0.033 7.2E-07 54.3 7.1 20 328-347 2-21 (185)
408 PRK08533 flagellar accessory p 95.6 0.059 1.3E-06 54.7 9.0 33 325-357 24-59 (230)
409 TIGR00455 apsK adenylylsulfate 95.6 0.041 8.9E-07 53.3 7.6 36 326-361 19-57 (184)
410 PF01443 Viral_helicase1: Vira 95.5 0.0086 1.9E-07 59.7 2.8 22 328-349 1-22 (234)
411 PLN02459 probable adenylate ki 95.5 0.013 2.7E-07 60.8 4.0 30 326-355 30-59 (261)
412 PRK05537 bifunctional sulfate 95.5 0.05 1.1E-06 62.5 9.2 36 326-361 393-432 (568)
413 PLN02165 adenylate isopentenyl 95.5 0.013 2.8E-07 62.7 4.0 34 326-359 44-77 (334)
414 PF06048 DUF927: Domain of unk 95.5 0.1 2.3E-06 54.6 10.8 104 262-405 154-257 (286)
415 PRK12727 flagellar biosynthesi 95.5 0.12 2.5E-06 58.7 11.6 25 325-349 350-374 (559)
416 PRK10416 signal recognition pa 95.4 0.23 5.1E-06 53.0 13.3 25 325-349 114-138 (318)
417 TIGR02858 spore_III_AA stage I 95.4 0.044 9.5E-07 57.1 7.6 25 326-350 112-136 (270)
418 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.042 9.1E-07 51.5 6.7 25 325-349 26-50 (144)
419 PF07931 CPT: Chloramphenicol 95.4 0.075 1.6E-06 51.9 8.7 38 326-363 2-39 (174)
420 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.026 5.7E-07 60.6 5.8 54 271-349 59-112 (358)
421 PF01745 IPT: Isopentenyl tran 95.3 0.018 4E-07 57.8 4.3 37 327-363 3-39 (233)
422 cd03115 SRP The signal recogni 95.3 0.053 1.1E-06 51.9 7.4 33 327-359 2-37 (173)
423 PRK05541 adenylylsulfate kinas 95.3 0.015 3.1E-07 56.0 3.5 26 325-350 7-32 (176)
424 TIGR01420 pilT_fam pilus retra 95.3 0.023 5E-07 61.1 5.3 25 326-350 123-147 (343)
425 PRK10875 recD exonuclease V su 95.3 0.08 1.7E-06 61.3 9.9 25 325-349 167-191 (615)
426 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.084 1.8E-06 52.7 8.8 24 326-349 30-53 (204)
427 PRK13975 thymidylate kinase; P 95.3 0.026 5.6E-07 55.0 5.0 27 326-352 3-29 (196)
428 PF13086 AAA_11: AAA domain; P 95.2 0.014 3.1E-07 57.2 3.2 22 328-349 20-41 (236)
429 KOG0058 Peptide exporter, ABC 95.2 0.093 2E-06 60.7 10.0 24 326-349 495-518 (716)
430 TIGR00064 ftsY signal recognit 95.2 0.049 1.1E-06 56.8 7.2 25 325-349 72-96 (272)
431 cd03281 ABC_MSH5_euk MutS5 hom 95.2 0.038 8.3E-07 55.4 6.2 22 326-347 30-51 (213)
432 PRK00091 miaA tRNA delta(2)-is 95.2 0.017 3.7E-07 61.2 3.8 35 326-360 5-39 (307)
433 cd01129 PulE-GspE PulE/GspE Th 95.2 0.018 4E-07 59.7 3.9 25 326-350 81-105 (264)
434 PF06745 KaiC: KaiC; InterPro 95.1 0.12 2.7E-06 51.6 9.7 22 325-346 19-40 (226)
435 KOG2228 Origin recognition com 95.1 0.41 8.9E-06 51.2 13.7 29 326-354 50-81 (408)
436 PRK12339 2-phosphoglycerate ki 95.1 0.02 4.4E-07 56.8 3.9 28 326-353 4-31 (197)
437 PRK11889 flhF flagellar biosyn 95.1 0.25 5.4E-06 54.3 12.4 25 325-349 241-265 (436)
438 TIGR02322 phosphon_PhnN phosph 95.1 0.017 3.6E-07 55.6 3.2 25 327-351 3-27 (179)
439 cd00544 CobU Adenosylcobinamid 95.1 0.048 1E-06 52.9 6.3 32 328-359 2-33 (169)
440 PRK09825 idnK D-gluconate kina 95.0 0.023 4.9E-07 55.3 4.0 29 326-354 4-32 (176)
441 PRK09354 recA recombinase A; P 95.0 0.06 1.3E-06 58.1 7.4 80 325-404 60-152 (349)
442 TIGR01663 PNK-3'Pase polynucle 95.0 0.34 7.4E-06 55.2 13.6 34 324-357 368-401 (526)
443 PRK13808 adenylate kinase; Pro 95.0 0.021 4.5E-07 61.2 3.8 30 327-356 2-31 (333)
444 TIGR01447 recD exodeoxyribonuc 95.0 0.095 2.1E-06 60.4 9.3 25 325-349 160-184 (586)
445 cd03283 ABC_MutS-like MutS-lik 94.9 0.053 1.1E-06 53.8 6.3 24 326-349 26-49 (199)
446 cd02024 NRK1 Nicotinamide ribo 94.9 0.023 5.1E-07 56.0 3.6 30 328-357 2-32 (187)
447 cd02022 DPCK Dephospho-coenzym 94.9 0.025 5.4E-07 54.9 3.7 29 328-357 2-30 (179)
448 PF00485 PRK: Phosphoribulokin 94.8 0.022 4.7E-07 55.9 3.3 24 328-351 2-25 (194)
449 cd03280 ABC_MutS2 MutS2 homolo 94.8 0.041 8.9E-07 54.3 5.1 21 326-346 29-49 (200)
450 PRK12338 hypothetical protein; 94.8 0.024 5.3E-07 60.3 3.6 30 325-354 4-33 (319)
451 cd00983 recA RecA is a bacter 94.8 0.13 2.8E-06 55.0 9.1 79 326-404 56-147 (325)
452 cd03222 ABC_RNaseL_inhibitor T 94.8 0.082 1.8E-06 51.6 7.0 25 325-349 25-49 (177)
453 PRK00023 cmk cytidylate kinase 94.8 0.026 5.6E-07 57.1 3.6 32 326-357 5-36 (225)
454 PRK14021 bifunctional shikimat 94.7 0.026 5.6E-07 64.4 4.0 34 326-359 7-40 (542)
455 COG4608 AppF ABC-type oligopep 94.7 0.085 1.8E-06 54.7 7.3 25 326-350 40-64 (268)
456 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.11 2.3E-06 49.0 7.6 25 326-350 26-50 (157)
457 PRK13951 bifunctional shikimat 94.7 0.026 5.7E-07 63.6 3.8 33 327-359 2-34 (488)
458 PF00519 PPV_E1_C: Papillomavi 94.7 0.091 2E-06 57.1 7.7 99 323-464 260-360 (432)
459 cd01123 Rad51_DMC1_radA Rad51_ 94.7 0.074 1.6E-06 53.3 6.7 24 325-348 19-42 (235)
460 COG1485 Predicted ATPase [Gene 94.6 0.23 4.9E-06 53.4 10.4 29 322-350 62-90 (367)
461 cd00071 GMPK Guanosine monopho 94.6 0.028 6.1E-07 52.3 3.2 25 328-352 2-26 (137)
462 PRK09270 nucleoside triphospha 94.6 0.068 1.5E-06 53.9 6.2 25 326-350 34-58 (229)
463 cd03284 ABC_MutS1 MutS1 homolo 94.6 0.049 1.1E-06 54.7 5.1 22 326-347 31-52 (216)
464 PRK11545 gntK gluconate kinase 94.6 0.023 5.1E-07 54.4 2.7 27 331-357 1-27 (163)
465 KOG0780 Signal recognition par 94.6 2.7 5.9E-05 45.9 18.2 26 324-349 100-125 (483)
466 cd03216 ABC_Carb_Monos_I This 94.6 0.11 2.4E-06 49.6 7.3 25 325-349 26-50 (163)
467 TIGR03263 guanyl_kin guanylate 94.6 0.023 5.1E-07 54.5 2.6 26 326-351 2-27 (180)
468 cd03287 ABC_MSH3_euk MutS3 hom 94.6 0.15 3.3E-06 51.5 8.6 22 326-347 32-53 (222)
469 COG4088 Predicted nucleotide k 94.5 0.025 5.3E-07 56.6 2.7 23 327-349 3-25 (261)
470 cd02028 UMPK_like Uridine mono 94.5 0.038 8.3E-07 53.8 4.1 34 328-361 2-38 (179)
471 cd00561 CobA_CobO_BtuR ATP:cor 94.5 0.15 3.3E-06 49.0 8.0 24 326-349 3-26 (159)
472 PRK13764 ATPase; Provisional 94.5 0.057 1.2E-06 62.2 5.9 25 326-350 258-282 (602)
473 PRK08356 hypothetical protein; 94.5 0.034 7.4E-07 54.6 3.7 28 326-354 6-33 (195)
474 PF01202 SKI: Shikimate kinase 94.4 0.025 5.4E-07 53.8 2.5 26 334-359 1-26 (158)
475 TIGR00235 udk uridine kinase. 94.4 0.031 6.7E-07 55.4 3.3 25 326-350 7-31 (207)
476 TIGR01967 DEAH_box_HrpA ATP-de 94.4 0.18 4E-06 62.6 10.4 25 325-349 82-106 (1283)
477 TIGR00174 miaA tRNA isopenteny 94.4 0.035 7.6E-07 58.4 3.7 35 328-362 2-36 (287)
478 PRK13826 Dtr system oriT relax 94.4 0.061 1.3E-06 65.7 6.2 90 323-429 395-493 (1102)
479 PLN02840 tRNA dimethylallyltra 94.4 0.037 8.1E-07 61.0 4.0 35 326-360 22-56 (421)
480 PRK06851 hypothetical protein; 94.4 0.31 6.7E-06 53.0 11.0 35 325-359 214-251 (367)
481 COG2805 PilT Tfp pilus assembl 94.4 0.1 2.3E-06 54.9 7.0 72 325-401 125-209 (353)
482 cd02023 UMPK Uridine monophosp 94.4 0.032 6.9E-07 54.7 3.2 22 328-349 2-23 (198)
483 PRK08485 DNA polymerase III su 94.4 0.15 3.3E-06 50.8 7.8 25 392-430 56-80 (206)
484 PRK00300 gmk guanylate kinase; 94.4 0.035 7.5E-07 54.5 3.4 25 326-350 6-30 (205)
485 PRK04841 transcriptional regul 94.4 0.51 1.1E-05 56.6 13.9 25 326-350 33-57 (903)
486 KOG0922 DEAH-box RNA helicase 94.4 0.071 1.5E-06 60.9 6.2 15 326-340 67-81 (674)
487 PRK14712 conjugal transfer nic 94.3 0.08 1.7E-06 66.7 7.1 86 326-429 853-955 (1623)
488 PF10923 DUF2791: P-loop Domai 94.3 0.56 1.2E-05 51.9 12.8 156 390-606 239-402 (416)
489 COG3172 NadR Predicted ATPase/ 94.3 0.09 1.9E-06 50.7 5.7 36 326-361 9-44 (187)
490 cd01393 recA_like RecA is a b 94.3 0.099 2.1E-06 52.1 6.5 24 326-349 20-43 (226)
491 COG1643 HrpA HrpA-like helicas 94.3 0.11 2.3E-06 62.0 7.7 19 326-344 66-84 (845)
492 PF06414 Zeta_toxin: Zeta toxi 94.3 0.046 1E-06 53.9 4.0 38 325-362 15-53 (199)
493 PRK14737 gmk guanylate kinase; 94.2 0.036 7.8E-07 54.5 3.2 25 325-349 4-28 (186)
494 PRK12337 2-phosphoglycerate ki 94.2 0.13 2.7E-06 57.5 7.7 34 325-358 255-289 (475)
495 PRK14700 recombination factor 94.2 0.15 3.4E-06 53.6 8.0 73 514-597 20-92 (300)
496 cd03243 ABC_MutS_homologs The 94.2 0.074 1.6E-06 52.5 5.4 22 326-347 30-51 (202)
497 TIGR02788 VirB11 P-type DNA tr 94.2 0.058 1.3E-06 57.1 4.9 24 326-349 145-168 (308)
498 PLN02348 phosphoribulokinase 94.2 0.44 9.4E-06 52.2 11.6 26 326-351 50-75 (395)
499 PF00488 MutS_V: MutS domain V 94.2 0.13 2.7E-06 52.6 7.1 24 326-349 44-67 (235)
500 cd01672 TMPK Thymidine monopho 94.1 0.047 1E-06 52.5 3.8 22 328-349 3-24 (200)
No 1
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-64 Score=524.47 Aligned_cols=346 Identities=71% Similarity=1.075 Sum_probs=318.0
Q ss_pred CCCChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHH--hhhcCCC-CCCh-------------------------hh
Q 007362 260 DLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYH--ANLKKGS-GAEP-------------------------KT 311 (606)
Q Consensus 260 ~~~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~--~~~~~g~-g~s~-------------------------~~ 311 (606)
.+++|++|++.|+++||||+.||+.|..+||+||+|+++ ..+++.. +.+. ..
T Consensus 132 ~~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~ 211 (564)
T KOG0745|consen 132 PPPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQI 211 (564)
T ss_pred CCCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchh
Confidence 668999999999999999999999999999999999998 3222221 1111 12
Q ss_pred Hhhhccc-ccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcC
Q 007362 312 AAAVDND-DNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQ 390 (606)
Q Consensus 312 ~~~~d~~-~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~ 390 (606)
....|.. ..+.+.+.+|||.||+|+|||+||+.||+.+++||...||+.|+++||+|++++..+.+++..+.++++.++
T Consensus 212 ~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQ 291 (564)
T KOG0745|consen 212 AKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQ 291 (564)
T ss_pred cccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHh
Confidence 2233333 488999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHH
Q 007362 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (606)
Q Consensus 391 ~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~ 470 (606)
.+||||||+|++..+..+.+.++++|++.+|++||+++||+++++++++.+...+++.++|||+||+|||.|+|.+|+++
T Consensus 292 qGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~ 371 (564)
T KOG0745|consen 292 QGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKI 371 (564)
T ss_pred cCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHH
Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCcCcc----ccccccc--ccchhHh-HHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHH
Q 007362 471 ISERRQDSSIGFGAP----VRANMRA--GVTDAAV-TSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVL 543 (606)
Q Consensus 471 i~~~~~~~~igf~~~----~~~~~~~--~~~~~~~-~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il 543 (606)
|.+|+.+.++||+.+ +++++.. +.+.... ...+++.+++.||+.++++|||++||+.+++|.+|++++|.+|+
T Consensus 372 I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VL 451 (564)
T KOG0745|consen 372 ISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVL 451 (564)
T ss_pred HHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHH
Confidence 999999999999999 5566555 5555554 45599999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHhcC
Q 007362 544 TEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEVR 605 (606)
Q Consensus 544 ~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~~~ 605 (606)
.++.+.|.+||+++|.+.+++|.++++|++.|++.+...++|||.|+.++|++++++||++|
T Consensus 452 tEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevP 513 (564)
T KOG0745|consen 452 TEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVP 513 (564)
T ss_pred hcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999998
No 2
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-59 Score=470.98 Aligned_cols=328 Identities=61% Similarity=0.994 Sum_probs=310.4
Q ss_pred CCCCCChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCH
Q 007362 258 GEDLPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSG 337 (606)
Q Consensus 258 ~~~~~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTG 337 (606)
....++|+++++.|+++|+||+.||+.|+.+|+|||+|+.... ....+++.+.+|||.||+|+|
T Consensus 46 ~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~----------------~~~dvEL~KSNILLiGPTGsG 109 (408)
T COG1219 46 LSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKE----------------DNDDVELSKSNILLIGPTGSG 109 (408)
T ss_pred hccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccC----------------CCCceeeeeccEEEECCCCCc
Confidence 3457899999999999999999999999999999999996443 123378889999999999999
Q ss_pred HHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcch
Q 007362 338 KTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (606)
Q Consensus 338 KT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~ 417 (606)
||+||+.||+.+++||...|++.|+++||+|++++.++.++++.+.+.++.++.+||||||||++..+.++..+.+++|+
T Consensus 110 KTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSG 189 (408)
T COG1219 110 KTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSG 189 (408)
T ss_pred HHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred hHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchh
Q 007362 418 EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDA 497 (606)
Q Consensus 418 ~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~ 497 (606)
+.+|++||++|||+..++|-.|.+++....++++||+|++|||+|+|..|+++|..|...+.|||++.+... ...
T Consensus 190 EGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~-----~~~ 264 (408)
T COG1219 190 EGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSK-----SKK 264 (408)
T ss_pred hHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccch-----hhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999887542 223
Q ss_pred HhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Q 007362 498 AVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAK 577 (606)
Q Consensus 498 ~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~ 577 (606)
.....+++.++++||+++++.|||++|++.+..+.+|+++++.+|+.++.|.|.+||+++|++.++++.|+++|++.+++
T Consensus 265 ~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~ 344 (408)
T COG1219 265 KEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAK 344 (408)
T ss_pred hhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHHhcCC
Q 007362 578 KATAKNTGARGLRAILESILTEAMYEVRT 606 (606)
Q Consensus 578 ~a~~~~~GAR~L~~~Ie~~l~~al~~~~~ 606 (606)
++....+|||+|+.++|.++.+.||++|+
T Consensus 345 ~A~~rkTGARGLRsI~E~~lld~MfelPs 373 (408)
T COG1219 345 KAIERKTGARGLRSIIEELLLDVMFELPS 373 (408)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999995
No 3
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=1.4e-46 Score=407.05 Aligned_cols=326 Identities=63% Similarity=1.014 Sum_probs=291.3
Q ss_pred CCChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHH
Q 007362 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (606)
Q Consensus 261 ~~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~ 340 (606)
+++|+++...|+++|+||++||+.|..+|++||+++...... ...++.++.++||+||||||||+
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~---------------~~~~~~~~~~iLl~Gp~GtGKT~ 123 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKK---------------DDDVELQKSNILLIGPTGSGKTL 123 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhccccc---------------ccccccCCceEEEEcCCCCCHHH
Confidence 679999999999999999999999999999999998543110 01344566899999999999999
Q ss_pred HHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 341 lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
+|++||+.++.+|+.++++.+.+.+|+|.+.+..+..++..+.+.+..+.++||||||||++..++....++.++|++.+
T Consensus 124 lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~v 203 (412)
T PRK05342 124 LAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGV 203 (412)
T ss_pred HHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHH
Confidence 99999999999999999999988899999988888888877777777788999999999999987666667889999999
Q ss_pred HHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhH
Q 007362 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (606)
Q Consensus 421 q~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~ 500 (606)
|++||++|||..+.++..|.++......++++|+|++|||+|+|..+++.+..+.....+||+...... ......
T Consensus 204 Q~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~-----~~~~~~ 278 (412)
T PRK05342 204 QQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSK-----KEKRTE 278 (412)
T ss_pred HHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccc-----cccchh
Confidence 999999999999999888888888889999999999999999999999999998888899997543211 111123
Q ss_pred HHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccC
Q 007362 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (606)
Q Consensus 501 ~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~ 580 (606)
..+++.+.++++.+++|.|||++|+|.++.|.+|+++++.+|+...++.+.++|++.+..+++++.++++++++|++.+|
T Consensus 279 ~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~ 358 (412)
T PRK05342 279 GELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAI 358 (412)
T ss_pred HHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCC
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCC
Q 007362 581 AKNTGARGLRAILESILTEAMYEVRT 606 (606)
Q Consensus 581 ~~~~GAR~L~~~Ie~~l~~al~~~~~ 606 (606)
+.++|||.|+++|++.+.+.|+++|+
T Consensus 359 ~~~~GAR~Lrriie~~l~~~~~~~p~ 384 (412)
T PRK05342 359 ERKTGARGLRSILEEILLDVMFELPS 384 (412)
T ss_pred CCCCCCchHHHHHHHHhHHHHHhccc
Confidence 99999999999999999999999985
No 4
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=100.00 E-value=5.2e-46 Score=401.03 Aligned_cols=326 Identities=63% Similarity=1.001 Sum_probs=289.5
Q ss_pred CCChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHH
Q 007362 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (606)
Q Consensus 261 ~~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~ 340 (606)
+++|+++.+.|+++|+||++||+.|..++++||+++....... ....++..+.++||+||||||||+
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~-------------~~~~~~~~~~~iLL~GP~GsGKT~ 131 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKK-------------SDNGVELSKSNILLIGPTGSGKTL 131 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccc-------------cccccccCCceEEEECCCCcCHHH
Confidence 6799999999999999999999999999999999985310000 001244556899999999999999
Q ss_pred HHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 341 lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
+|++||+.++.+|+.++++.+...+|+|++.+..+..++....+.+..+.++||||||||+++++++...++.++|++++
T Consensus 132 lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~v 211 (413)
T TIGR00382 132 LAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGV 211 (413)
T ss_pred HHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhH
Confidence 99999999999999999999888899999878888888887777777888999999999999998888888999999999
Q ss_pred HHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhH
Q 007362 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (606)
Q Consensus 421 q~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~ 500 (606)
|+.||++|||..++++..|.++.+....++++|+|++|||+|+|..+++++..+.....+||....... ....
T Consensus 212 q~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~-------~~~~ 284 (413)
T TIGR00382 212 QQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKK-------SKEK 284 (413)
T ss_pred HHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcccccccccccc-------chhh
Confidence 999999999999998888888888888999999999999999999999999888777789997542211 1123
Q ss_pred HHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccC
Q 007362 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (606)
Q Consensus 501 ~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~ 580 (606)
..+++.+.++++.+++|.|||++|+|.++.|.+|+.+++.+|+...++.+.++|++.+..+++++.++++++++|++.+|
T Consensus 285 ~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~ 364 (413)
T TIGR00382 285 ADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKAL 364 (413)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCC
Confidence 46777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhcCC
Q 007362 581 AKNTGARGLRAILESILTEAMYEVRT 606 (606)
Q Consensus 581 ~~~~GAR~L~~~Ie~~l~~al~~~~~ 606 (606)
+.++|||.|+++|++.+.+.|+++|+
T Consensus 365 ~~~~GAR~Lr~iie~~l~~~m~e~p~ 390 (413)
T TIGR00382 365 ERKTGARGLRSIVEGLLLDVMFDLPS 390 (413)
T ss_pred CCCCCchHHHHHHHHhhHHHHhhCCC
Confidence 99999999999999999999999985
No 5
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=100.00 E-value=4.3e-38 Score=336.24 Aligned_cols=269 Identities=45% Similarity=0.714 Sum_probs=232.6
Q ss_pred ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHH
Q 007362 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (606)
Q Consensus 263 ~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lA 342 (606)
+|+++.+.|+++|+||++||+.|..++++||++.... .. ..-...+.+|||+||||||||++|
T Consensus 2 tP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~---~~--------------~~~e~~p~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 2 TPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLN---EE--------------LKDEVTPKNILMIGPTGVGKTEIA 64 (441)
T ss_pred CHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccc---cc--------------cccccCCceEEEECCCCCCHHHHH
Confidence 7999999999999999999999999999999986321 00 011234589999999999999999
Q ss_pred HHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhh---------------------------------h-----
Q 007362 343 KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAE---------------------------------F----- 384 (606)
Q Consensus 343 ralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~---------------------------------~----- 384 (606)
++||+.++.+|+.++++.+.+.+|+|.+.+..++.++..+. .
T Consensus 65 raLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~ 144 (441)
T TIGR00390 65 RRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTE 144 (441)
T ss_pred HHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 99999999999999999988778999877788888776540 0
Q ss_pred ----------------------------hh--------------------------------------------------
Q 007362 385 ----------------------------NV-------------------------------------------------- 386 (606)
Q Consensus 385 ----------------------------~l-------------------------------------------------- 386 (606)
.+
T Consensus 145 ~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~ 224 (441)
T TIGR00390 145 QQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALI 224 (441)
T ss_pred cccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHH
Confidence 00
Q ss_pred -------------------hhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCC
Q 007362 387 -------------------EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGD 447 (606)
Q Consensus 387 -------------------~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~ 447 (606)
...+.+|||||||||+..+. ...+.++|++.||+.||++|||..+++ +
T Consensus 225 ~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~--~~~~~DvS~eGVQ~~LLkilEGt~v~~-----------k 291 (441)
T TIGR00390 225 AEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKG--ESSGADVSREGVQRDLLPIVEGSTVNT-----------K 291 (441)
T ss_pred HHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccC--CCCCCCCCccchhccccccccCceeee-----------c
Confidence 12578999999999998764 345789999999999999999988874 2
Q ss_pred cEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe
Q 007362 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI 527 (606)
Q Consensus 448 ~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~ 527 (606)
...++|+|++|||+|+|+.. +++| +.|||.+||+.
T Consensus 292 ~~~v~T~~ILFI~~GAF~~~----------------------------------------kp~D-----lIPEl~GR~Pi 326 (441)
T TIGR00390 292 YGMVKTDHILFIAAGAFQLA----------------------------------------KPSD-----LIPELQGRFPI 326 (441)
T ss_pred ceeEECCceeEEecCCcCCC----------------------------------------Chhh-----ccHHHhCccce
Confidence 35899999999999998621 1222 78999999999
Q ss_pred EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCC-----CCCChHHHHHHHHHHHHHHHH
Q 007362 528 LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATA-----KNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 528 iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~-----~~~GAR~L~~~Ie~~l~~al~ 602 (606)
++.|.+|+++++.+||.++.+.|.+||+.+|+..++++.|++++++.|++.++. .++|||.|+.++|+++.+.++
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~f 406 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISF 406 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999886 899999999999999999999
Q ss_pred hcCC
Q 007362 603 EVRT 606 (606)
Q Consensus 603 ~~~~ 606 (606)
+.|+
T Consensus 407 e~p~ 410 (441)
T TIGR00390 407 EAPD 410 (441)
T ss_pred cCCC
Confidence 9985
No 6
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=100.00 E-value=1.3e-37 Score=332.67 Aligned_cols=270 Identities=45% Similarity=0.722 Sum_probs=233.2
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
.+|+++.+.|+++|+||++||+.|..+++++|++.... . .......+.++||+||||||||++
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~---~--------------~~~~e~~~~~ILliGp~G~GKT~L 66 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLP---E--------------ELRDEVTPKNILMIGPTGVGKTEI 66 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCC---c--------------ccccccCCceEEEECCCCCCHHHH
Confidence 48999999999999999999999999999998875211 0 011223358999999999999999
Q ss_pred HHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhh--------------------------------------
Q 007362 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAE-------------------------------------- 383 (606)
Q Consensus 342 AralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~-------------------------------------- 383 (606)
|++||+.++.+|+.++++.+.+.+|+|.+.+..++.++..+.
T Consensus 67 Ar~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~ 146 (443)
T PRK05201 67 ARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEE 146 (443)
T ss_pred HHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCcccc
Confidence 999999999999999999999889999887888888876660
Q ss_pred --------------------------------h--------h--------------------------------------
Q 007362 384 --------------------------------F--------N-------------------------------------- 385 (606)
Q Consensus 384 --------------------------------~--------~-------------------------------------- 385 (606)
. .
T Consensus 147 ~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~ 226 (443)
T PRK05201 147 EEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILI 226 (443)
T ss_pred ccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHH
Confidence 0 0
Q ss_pred -----------------hhh-cCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCC
Q 007362 386 -----------------VEA-AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGD 447 (606)
Q Consensus 386 -----------------l~~-a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~ 447 (606)
+.. .+.+||||||||++..+..+ .+.++|++.+|+.||++|||..+++ +
T Consensus 227 ~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~-----------k 293 (443)
T PRK05201 227 EEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVST-----------K 293 (443)
T ss_pred HHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC--CCCCCCccchhcccccccccceeee-----------c
Confidence 122 37899999999999876432 4789999999999999999988875 2
Q ss_pred cEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe
Q 007362 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI 527 (606)
Q Consensus 448 ~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~ 527 (606)
...++|++++|||+|+|+. .+++| +.|||.+||+.
T Consensus 294 ~~~i~T~~ILFI~~GAF~~----------------------------------------~kp~D-----lIPEl~GR~Pi 328 (443)
T PRK05201 294 YGMVKTDHILFIASGAFHV----------------------------------------SKPSD-----LIPELQGRFPI 328 (443)
T ss_pred ceeEECCceeEEecCCcCC----------------------------------------CChhh-----ccHHHhCccce
Confidence 3589999999999999862 01122 68999999999
Q ss_pred EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCC-----CCCChHHHHHHHHHHHHHHHH
Q 007362 528 LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATA-----KNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 528 iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~-----~~~GAR~L~~~Ie~~l~~al~ 602 (606)
++.|.+|+++++.+||.++.+.|.+||+.+|...++++.|++++++.||+.++. .++|||.|+.++|+++.+.|+
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~F 408 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISF 408 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999987 799999999999999999999
Q ss_pred hcCC
Q 007362 603 EVRT 606 (606)
Q Consensus 603 ~~~~ 606 (606)
++|+
T Consensus 409 e~p~ 412 (443)
T PRK05201 409 EAPD 412 (443)
T ss_pred cCCC
Confidence 9985
No 7
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-33 Score=315.45 Aligned_cols=276 Identities=24% Similarity=0.391 Sum_probs=217.7
Q ss_pred CcccCCCCCCCCCCChHH----HHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccccc
Q 007362 249 GSRWGGSNLGEDLPTPKE----ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (606)
Q Consensus 249 ~~~~~g~p~~~~~~~~~~----l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~ 324 (606)
+++|+|+|+.+....+++ +.+.|.+.|+||++|++.|..+|.+.. +++.. ..+ |
T Consensus 463 v~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraR-----aGL~d-------------p~r----P 520 (786)
T COG0542 463 VARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRAR-----AGLGD-------------PNR----P 520 (786)
T ss_pred HHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHh-----cCCCC-------------CCC----C
Confidence 578999999987766554 788889999999999999999996432 22211 111 2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC---Cceeecchhhhhhc-----------CCcccchHHHHHHHHHhhhhhhhhcC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQA-----------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~---~~fi~i~~s~l~~s-----------g~vG~~~~~~l~~lf~~a~~~l~~a~ 390 (606)
-.++||.||+|+|||.||++||..+. ..++++||+++.+. ||||++.+..+++..... +
T Consensus 521 igsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~-------P 593 (786)
T COG0542 521 IGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK-------P 593 (786)
T ss_pred ceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcC-------C
Confidence 26899999999999999999999996 78999999988753 999999888887776555 4
Q ss_pred CCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHH
Q 007362 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (606)
Q Consensus 391 ~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~ 469 (606)
.+||+||||+|.+++ +++.||++|| |+.++ . .+..+|++|.++|+|+|... +
T Consensus 594 ySViLlDEIEKAHpd--------------V~nilLQVlDdGrLTD--~---------~Gr~VdFrNtiIImTSN~Gs--~ 646 (786)
T COG0542 594 YSVILLDEIEKAHPD--------------VFNLLLQVLDDGRLTD--G---------QGRTVDFRNTIIIMTSNAGS--E 646 (786)
T ss_pred CeEEEechhhhcCHH--------------HHHHHHHHhcCCeeec--C---------CCCEEecceeEEEEecccch--H
Confidence 579999999999999 9999999999 65553 2 23478999999999998642 1
Q ss_pred HHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHH
Q 007362 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (606)
Q Consensus 470 ~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~ 549 (606)
.+... .++ ........+...+++. ++..|.|||++|+|.+|.|.+|+.+++.+|++..+..
T Consensus 647 ~i~~~-----~~~--------~~~~~~~~~~~~v~~~------l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~ 707 (786)
T COG0542 647 EILRD-----ADG--------DDFADKEALKEAVMEE------LKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR 707 (786)
T ss_pred HHHhh-----ccc--------cccchhhhHHHHHHHH------HHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH
Confidence 11111 000 0001122333334333 4566999999999999999999999999999998777
Q ss_pred HHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 550 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 550 L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
+.+++. .+++.+++++++.++|++++|++.+|||.|+++|++.+.+.|.+
T Consensus 708 l~~~L~----~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 708 LAKRLA----ERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred HHHHHH----hCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 776654 57999999999999999999999999999999999999998865
No 8
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-32 Score=277.74 Aligned_cols=270 Identities=43% Similarity=0.699 Sum_probs=230.2
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
.+|+++...|+++||||++||+.+..+++|.|+|..-.. .-+-+..|.+||+.||+|+|||.+
T Consensus 4 ~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~-----------------~lr~EV~PKNILMIGpTGVGKTEI 66 (444)
T COG1220 4 MTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEE-----------------ELRDEVTPKNILMIGPTGVGKTEI 66 (444)
T ss_pred CCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCH-----------------HHhhccCccceEEECCCCCcHHHH
Confidence 589999999999999999999999999999999863221 112234579999999999999999
Q ss_pred HHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhh------------------------------------
Q 007362 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN------------------------------------ 385 (606)
Q Consensus 342 AralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~------------------------------------ 385 (606)
||.||+..+.||+.+.++.+++.||+|.+++++++++.+.+-..
T Consensus 67 ARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~ 146 (444)
T COG1220 67 ARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQS 146 (444)
T ss_pred HHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcC
Confidence 99999999999999999999999999999999999876621100
Q ss_pred --------------------------------------------------------------------------------
Q 007362 386 -------------------------------------------------------------------------------- 385 (606)
Q Consensus 386 -------------------------------------------------------------------------------- 385 (606)
T Consensus 147 ~~~~~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L 226 (444)
T COG1220 147 ENKQESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLL 226 (444)
T ss_pred cccccchHHHHHHHHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHH
Confidence
Q ss_pred ------------------h-hhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCC
Q 007362 386 ------------------V-EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG 446 (606)
Q Consensus 386 ------------------l-~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~ 446 (606)
+ ..-+.+||||||||+++.... ..+.++|++.+|.-||.++||..++- .
T Consensus 227 ~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~--~g~~dvSREGVQRDlLPlvEGstV~T-K--------- 294 (444)
T COG1220 227 IEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGG--SGGPDVSREGVQRDLLPLVEGSTVST-K--------- 294 (444)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHhcCeEEEehhhHHHhcCC--CCCCCcchhhhcccccccccCceeec-c---------
Confidence 0 023569999999999987533 34449999999999999999977752 1
Q ss_pred CcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC
Q 007362 447 DSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP 526 (606)
Q Consensus 447 ~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d 526 (606)
.=.+.|.+++||.+|+|+- . +| .-|.|||-+||+
T Consensus 295 -yG~VkTdHILFIasGAFh~----------------s------------------------KP-----SDLiPELQGRfP 328 (444)
T COG1220 295 -YGPVKTDHILFIASGAFHV----------------A------------------------KP-----SDLIPELQGRFP 328 (444)
T ss_pred -ccccccceEEEEecCceec----------------C------------------------Ch-----hhcChhhcCCCc
Confidence 1157889999999999851 0 11 228899999999
Q ss_pred eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccC-----CCCCChHHHHHHHHHHHHHHH
Q 007362 527 ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT-----AKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 527 ~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~-----~~~~GAR~L~~~Ie~~l~~al 601 (606)
+.|.+.+|+.+++.+|+.+..+.|.+||+.+++-.++.+.|++++++.||+.+| ..|.|||.|.+++|+++.+..
T Consensus 329 IRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediS 408 (444)
T COG1220 329 IRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDIS 408 (444)
T ss_pred eEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999888 578899999999999999999
Q ss_pred HhcCC
Q 007362 602 YEVRT 606 (606)
Q Consensus 602 ~~~~~ 606 (606)
++.||
T Consensus 409 FeA~d 413 (444)
T COG1220 409 FEAPD 413 (444)
T ss_pred ccCCc
Confidence 99886
No 9
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=1.7e-29 Score=291.19 Aligned_cols=274 Identities=21% Similarity=0.312 Sum_probs=206.9
Q ss_pred CcccCCCCCCCCCCCh----HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccccc
Q 007362 249 GSRWGGSNLGEDLPTP----KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (606)
Q Consensus 249 ~~~~~g~p~~~~~~~~----~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~ 324 (606)
+++|+|+|+....... ..+.+.|.+.|+||++|++.|..+|...+..+... ..+
T Consensus 430 ~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~----------------------~kp 487 (758)
T PRK11034 430 VARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHE----------------------HKP 487 (758)
T ss_pred HHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCC----------------------CCC
Confidence 5689999998765544 35778888889999999999999996432211100 012
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh-----------cCCcccchHHHHHHHHHhhhhhhhhcCCCE
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~-----------sg~vG~~~~~~l~~lf~~a~~~l~~a~~~I 393 (606)
..++||+||||||||++|+++|+.++.+|+.++++++.+ .+|+|+.....+...+. ....+|
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~-------~~p~sV 560 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI-------KHPHAV 560 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH-------hCCCcE
Confidence 367999999999999999999999999999999987653 25666654444444332 235689
Q ss_pred EEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHh
Q 007362 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE 473 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~ 473 (606)
|||||||++++. +++.||++||++.++ +.. +..++.+|++||+|+|.. .+.+.
T Consensus 561 lllDEieka~~~--------------v~~~LLq~ld~G~lt-d~~---------g~~vd~rn~iiI~TsN~g-~~~~~-- 613 (758)
T PRK11034 561 LLLDEIEKAHPD--------------VFNLLLQVMDNGTLT-DNN---------GRKADFRNVVLVMTTNAG-VRETE-- 613 (758)
T ss_pred EEeccHhhhhHH--------------HHHHHHHHHhcCeee-cCC---------CceecCCCcEEEEeCCcC-HHHHh--
Confidence 999999999888 999999999944332 111 235789999999999854 22222
Q ss_pred hhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHH
Q 007362 474 RRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQ 553 (606)
Q Consensus 474 ~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~ 553 (606)
...+||..... . ...+ +.++..|.|+|++|||.+|.|.+|+.+++.+|+...+.++.++
T Consensus 614 ---~~~~g~~~~~~--------~----~~~~------~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~ 672 (758)
T PRK11034 614 ---RKSIGLIHQDN--------S----TDAM------EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQ 672 (758)
T ss_pred ---hcccCcccchh--------h----HHHH------HHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 23466642211 0 1111 2235569999999999999999999999999999876666544
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 554 YKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 554 ~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
+..+++++.++++++++|++.+|+..+|||.|+++|++.+...|.+
T Consensus 673 ----l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 673 ----LDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred ----HHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 4557999999999999999999999999999999999999998865
No 10
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=2e-28 Score=286.91 Aligned_cols=285 Identities=23% Similarity=0.334 Sum_probs=213.0
Q ss_pred CcccCCCCCCCCCCCh----HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccccc
Q 007362 249 GSRWGGSNLGEDLPTP----KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (606)
Q Consensus 249 ~~~~~g~p~~~~~~~~----~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~ 324 (606)
++.|+|+|+....... ..+++.|.+.|+||++|++.|..++...+..+.... .+
T Consensus 481 ~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~----------------------~p 538 (821)
T CHL00095 481 VSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPN----------------------RP 538 (821)
T ss_pred HHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCC----------------------CC
Confidence 5789999998876553 357889999999999999999999964433221111 11
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhh-----------cCCcccchHHHHHHHHHhhhhhhhhcC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~-----------sg~vG~~~~~~l~~lf~~a~~~l~~a~ 390 (606)
...+||+||+|||||++|++||+.+ ..++++++++++.+ .+|+|++....+...+... +
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~-------p 611 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKK-------P 611 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhC-------C
Confidence 2568999999999999999999988 35788998887632 3677777555554443332 4
Q ss_pred CCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHH
Q 007362 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (606)
Q Consensus 391 ~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~ 469 (606)
.+||+|||||++++. +++.|+++|| |..+. . .+..++.+|.+||+|+|... +
T Consensus 612 ~~VvllDeieka~~~--------------v~~~Llq~le~g~~~d--~---------~g~~v~~~~~i~I~Tsn~g~--~ 664 (821)
T CHL00095 612 YTVVLFDEIEKAHPD--------------IFNLLLQILDDGRLTD--S---------KGRTIDFKNTLIIMTSNLGS--K 664 (821)
T ss_pred CeEEEECChhhCCHH--------------HHHHHHHHhccCceec--C---------CCcEEecCceEEEEeCCcch--H
Confidence 579999999999988 9999999999 44442 1 23468899999999999753 2
Q ss_pred HHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHH
Q 007362 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (606)
Q Consensus 470 ~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~ 549 (606)
.|. .....+||....... +......+...+++. ++..|.|||++|+|.+|.|.+|+.+++.+|++..++.
T Consensus 665 ~i~--~~~~~~gf~~~~~~~--~~~~~~~~~~~~~~~------~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 665 VIE--TNSGGLGFELSENQL--SEKQYKRLSNLVNEE------LKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred HHH--hhccccCCccccccc--ccccHHHHHHHHHHH------HHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 332 122457776432110 001112222222222 3455999999999999999999999999999998777
Q ss_pred HHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 550 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 550 L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
+.+++ ..+++++.++++++++|++.+|+..+|||.|+++|++.+.+.|.+
T Consensus 735 l~~rl----~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 735 LFKRL----NEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHH----HHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 76664 346899999999999999999999999999999999999988875
No 11
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.96 E-value=2.8e-28 Score=282.71 Aligned_cols=274 Identities=23% Similarity=0.360 Sum_probs=206.2
Q ss_pred CcccCCCCCCCCCC----ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccccc
Q 007362 249 GSRWGGSNLGEDLP----TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (606)
Q Consensus 249 ~~~~~g~p~~~~~~----~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~ 324 (606)
++.|+++|+..... ....+.+.|.+.|+||++|++.|..++..... .... . ..+
T Consensus 426 i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~-----g~~~-------------~----~~p 483 (731)
T TIGR02639 426 VAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRA-----GLGN-------------P----NKP 483 (731)
T ss_pred HHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhc-----CCCC-------------C----CCC
Confidence 45689999866443 44468899999999999999999988852211 1100 0 011
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh-----------cCCcccchHHHHHHHHHhhhhhhhhcCCCE
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~-----------sg~vG~~~~~~l~~lf~~a~~~l~~a~~~I 393 (606)
..++||+||||||||++|++||+.++.+++.++++++.+ .+|+|++....+.+.+.. ...+|
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-------~p~~V 556 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-------HPHCV 556 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHh-------CCCeE
Confidence 256999999999999999999999999999999987653 367787755555554433 25689
Q ss_pred EEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHh
Q 007362 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE 473 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~ 473 (606)
|||||||+++++ +++.|+++||++.++ +. .+..++.+|.+||+|+|... +.+
T Consensus 557 vllDEieka~~~--------------~~~~Ll~~ld~g~~~-d~---------~g~~vd~~~~iii~Tsn~g~--~~~-- 608 (731)
T TIGR02639 557 LLLDEIEKAHPD--------------IYNILLQVMDYATLT-DN---------NGRKADFRNVILIMTSNAGA--SEM-- 608 (731)
T ss_pred EEEechhhcCHH--------------HHHHHHHhhccCeee-cC---------CCcccCCCCCEEEECCCcch--hhh--
Confidence 999999999988 999999999954433 11 22357899999999998642 111
Q ss_pred hhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHH
Q 007362 474 RRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQ 553 (606)
Q Consensus 474 ~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~ 553 (606)
....++|.... ....++ +.++..|.|+|++|||.+|.|.+|+.+++.+|+...++.+.+.
T Consensus 609 --~~~~~~f~~~~------------~~~~~~------~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~ 668 (731)
T TIGR02639 609 --SKPPIGFGSEN------------VESKSD------KAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQ 668 (731)
T ss_pred --hhccCCcchhh------------hHHHHH------HHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 12235553211 011111 2345669999999999999999999999999999877766554
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 554 YKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 554 ~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
+ ..+++++.++++++++|++++|+.++|||.|+++|++.+...|.+
T Consensus 669 l----~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 669 L----NEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred H----HhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 4 446889999999999999999999999999999999999998865
No 12
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.95 E-value=4.3e-27 Score=275.44 Aligned_cols=278 Identities=20% Similarity=0.331 Sum_probs=205.0
Q ss_pred CcccCCCCCCCCCCCh----HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccccc
Q 007362 249 GSRWGGSNLGEDLPTP----KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (606)
Q Consensus 249 ~~~~~g~p~~~~~~~~----~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~ 324 (606)
+++|+|+|+.+..... ..+.+.|.+.|+||++|++.|..++...... ...+ ..+
T Consensus 538 v~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g-----l~~~-----------------~~p 595 (852)
T TIGR03345 538 VADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAG-----LEDP-----------------RKP 595 (852)
T ss_pred HHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcC-----CCCC-----------------CCC
Confidence 5689999998866543 4578899999999999999999999633111 1100 012
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhh-----------cCCcccchHHHHHHHHHhhhhhhhhcC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~-----------sg~vG~~~~~~l~~lf~~a~~~l~~a~ 390 (606)
...+||.||||||||++|++||+.+ ...|+.++++++.+ .+|+|+.....+...+.. .+
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~-------~p 668 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR-------KP 668 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh-------CC
Confidence 2469999999999999999999998 35788999987653 278888765555544433 36
Q ss_pred CCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHH
Q 007362 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (606)
Q Consensus 391 ~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~ 470 (606)
.+||+|||||++++. +++.|+++|+.+.++ +. .+..++++|.+||+|+|... +.
T Consensus 669 ~svvllDEieka~~~--------------v~~~Llq~ld~g~l~-d~---------~Gr~vd~~n~iiI~TSNlg~-~~- 722 (852)
T TIGR03345 669 YSVVLLDEVEKAHPD--------------VLELFYQVFDKGVME-DG---------EGREIDFKNTVILLTSNAGS-DL- 722 (852)
T ss_pred CcEEEEechhhcCHH--------------HHHHHHHHhhcceee-cC---------CCcEEeccccEEEEeCCCch-HH-
Confidence 689999999999888 999999999943332 12 22468999999999998642 11
Q ss_pred HHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHH
Q 007362 471 ISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNAL 550 (606)
Q Consensus 471 i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L 550 (606)
+.+... ++.. ..........++.. +...|.|+|++|++ +|.|.+|+.+++.+|+...++.+
T Consensus 723 ~~~~~~----~~~~--------~~~~~~~~~~~~~~------~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l 783 (852)
T TIGR03345 723 IMALCA----DPET--------APDPEALLEALRPE------LLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRI 783 (852)
T ss_pred HHHhcc----Cccc--------CcchHHHHHHHHHH------HHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHH
Confidence 111110 0000 00111222223332 34459999999997 89999999999999999988887
Q ss_pred HHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 551 GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 551 ~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
.+++.. ..++++.++++++++|++.+|+..+|||.|+++|++.+...|.+
T Consensus 784 ~~rl~~---~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 784 ARRLKE---NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHHHH---hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 766543 24788999999999999999999999999999999999988865
No 13
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.94 E-value=2.3e-25 Score=262.05 Aligned_cols=274 Identities=24% Similarity=0.377 Sum_probs=200.4
Q ss_pred CcccCCCCCCCCCCChH----HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccccc
Q 007362 249 GSRWGGSNLGEDLPTPK----EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (606)
Q Consensus 249 ~~~~~g~p~~~~~~~~~----~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~ 324 (606)
+++|+|+|+........ .+.+.|.+.|+||+.|++.|..++......+..+ ..+
T Consensus 537 ~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~----------------------~~p 594 (852)
T TIGR03346 537 VSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDP----------------------NRP 594 (852)
T ss_pred HHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCC----------------------CCC
Confidence 46899999988665433 4678888889999999999999986331111000 012
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhh-----------cCCcccchHHHHHHHHHhhhhhhhhcC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~-----------sg~vG~~~~~~l~~lf~~a~~~l~~a~ 390 (606)
...+||+||+|||||++|++||+.+ +.+++.++++.+.+ .+|+|+.....+...+... .
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~-------p 667 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRK-------P 667 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcC-------C
Confidence 2579999999999999999999988 46899999886542 2566665444444333322 4
Q ss_pred CCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHH
Q 007362 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (606)
Q Consensus 391 ~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~ 470 (606)
.+|||||||+++++. +++.|+++|+.+.++ + ..+..++.+|.+||+|+|... +.
T Consensus 668 ~~vlllDeieka~~~--------------v~~~Ll~~l~~g~l~-d---------~~g~~vd~rn~iiI~TSn~g~-~~- 721 (852)
T TIGR03346 668 YSVVLFDEVEKAHPD--------------VFNVLLQVLDDGRLT-D---------GQGRTVDFRNTVIIMTSNLGS-QF- 721 (852)
T ss_pred CcEEEEeccccCCHH--------------HHHHHHHHHhcCcee-c---------CCCeEEecCCcEEEEeCCcch-Hh-
Confidence 579999999999988 999999999843332 1 123578899999999998642 11
Q ss_pred HHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHH
Q 007362 471 ISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNAL 550 (606)
Q Consensus 471 i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L 550 (606)
+.... . +....+....+++. +...|.|+|++|||.++.|.|++.+++.+|+...+..+
T Consensus 722 ~~~~~-------~---------~~~~~~~~~~~~~~------~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l 779 (852)
T TIGR03346 722 IQELA-------G---------GDDYEEMREAVMEV------LRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRL 779 (852)
T ss_pred Hhhhc-------c---------cccHHHHHHHHHHH------HHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHH
Confidence 11000 0 00111222222222 34569999999999999999999999999999887777
Q ss_pred HHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 551 GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 551 ~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
.+.+. ..++.+.++++++++|+++.|+..+|||+|+++|++.+...|.+
T Consensus 780 ~~~l~----~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 780 RKRLA----ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred HHHHH----HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 65543 35778899999999999999999999999999999999988865
No 14
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.93 E-value=2e-25 Score=262.00 Aligned_cols=273 Identities=25% Similarity=0.406 Sum_probs=199.6
Q ss_pred CcccCCCCCCCCCCCh----HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccccc
Q 007362 249 GSRWGGSNLGEDLPTP----KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELE 324 (606)
Q Consensus 249 ~~~~~g~p~~~~~~~~----~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~ 324 (606)
+++|+|+|+.+..... ..+.+.|.+.|+||+.|++.|..+|......+..+. .+
T Consensus 540 v~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~----------------------~p 597 (857)
T PRK10865 540 LARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPN----------------------RP 597 (857)
T ss_pred HHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCC----------------------CC
Confidence 5689999999877654 347888888899999999999999863211110000 11
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhh-----------cCCcccchHHHHHHHHHhhhhhhhhcC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQ 390 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~-----------sg~vG~~~~~~l~~lf~~a~~~l~~a~ 390 (606)
...+||+||+|||||++|++||+.+ +.+|+.++++++.+ .+|+|+.....+..... ...
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~-------~~p 670 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVR-------RRP 670 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHH-------hCC
Confidence 1479999999999999999999987 45789999887643 24556554333333322 225
Q ss_pred CCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHH
Q 007362 391 QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (606)
Q Consensus 391 ~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~ 469 (606)
.+||||||++++++. +++.|+++|+ |..+. .....++.+|.+||+|+|... +
T Consensus 671 ~~vLllDEieka~~~--------------v~~~Ll~ile~g~l~d-----------~~gr~vd~rn~iiI~TSN~g~--~ 723 (857)
T PRK10865 671 YSVILLDEVEKAHPD--------------VFNILLQVLDDGRLTD-----------GQGRTVDFRNTVVIMTSNLGS--D 723 (857)
T ss_pred CCeEEEeehhhCCHH--------------HHHHHHHHHhhCceec-----------CCceEEeecccEEEEeCCcch--H
Confidence 589999999999888 9999999998 43331 123568899999999998642 1
Q ss_pred HHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHH
Q 007362 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNA 549 (606)
Q Consensus 470 ~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~ 549 (606)
.+.++ |+.. ....+...++.. +...|.|+|++|+|.++.|.+++.+++.+|+...+..
T Consensus 724 ~~~~~-------~~~~---------~~~~~~~~~~~~------~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 724 LIQER-------FGEL---------DYAHMKELVLGV------VSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred HHHHh-------cccc---------chHHHHHHHHHH------HcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 11110 1111 111122222222 3456999999999999999999999999999988777
Q ss_pred HHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 550 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 550 L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
+.+++. ..++.+.++++++++|++++|+..+|||.|+++|++.+.+.|.+
T Consensus 782 l~~rl~----~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 782 LYKRLE----ERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred HHHHHH----hCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 665542 35677889999999999999999999999999999999988764
No 15
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-24 Score=224.99 Aligned_cols=167 Identities=26% Similarity=0.431 Sum_probs=129.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|+|+++||+.|.++|..+.. +.+..+.+..++++||++||||||||+|||++|.+++..|+
T Consensus 214 Iagl~~AK~lL~EAVvlPi~-------------------mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFF 274 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIW-------------------MPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFF 274 (491)
T ss_pred hcchHHHHHHHHHHHhhhhh-------------------hHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEE
Confidence 89999999999999974322 12233344455699999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.++.+.++ ++|.|++ +++++-+|+.++.. .+++|||||||.|+..|... +.|.+.+++.+.||..|||-.-+
T Consensus 275 NVSsstlt-SKwRGeS-EKlvRlLFemARfy----APStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t 346 (491)
T KOG0738|consen 275 NVSSSTLT-SKWRGES-EKLVRLLFEMARFY----APSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGT 346 (491)
T ss_pred Eechhhhh-hhhccch-HHHHHHHHHHHHHh----CCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccc
Confidence 99999998 6799999 89999999999988 89999999999999887653 56777788999999999973322
Q ss_pred cCCCCcccCCCCCcEEEecCceeeecc-CCCc-ChHHHHHhhhcccCCCcCcc
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICG-GAFV-DLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~t-gn~~-~l~~~i~~~~~~~~igf~~~ 485 (606)
.+.+.+|||++ +|+. ||++++++|. ..-|+...|
T Consensus 347 ----------------~e~~k~VmVLAATN~PWdiDEAlrRRl-EKRIyIPLP 382 (491)
T KOG0738|consen 347 ----------------LENSKVVMVLAATNFPWDIDEALRRRL-EKRIYIPLP 382 (491)
T ss_pred ----------------cccceeEEEEeccCCCcchHHHHHHHH-hhheeeeCC
Confidence 22244556554 4443 6777776443 334444444
No 16
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.90 E-value=2.3e-23 Score=207.98 Aligned_cols=216 Identities=28% Similarity=0.419 Sum_probs=160.8
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 273 ~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
+.|||||+||+.-...+. |.+ ++.... .-.|++||||||||||||++||+||++.+.|
T Consensus 121 ddViGqEeAK~kcrli~~--yLe--nPe~Fg------------------~WAPknVLFyGppGTGKTm~Akalane~kvp 178 (368)
T COG1223 121 DDVIGQEEAKRKCRLIME--YLE--NPERFG------------------DWAPKNVLFYGPPGTGKTMMAKALANEAKVP 178 (368)
T ss_pred hhhhchHHHHHHHHHHHH--Hhh--ChHHhc------------------ccCcceeEEECCCCccHHHHHHHHhcccCCc
Confidence 349999999997755543 222 221111 0135899999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~ 432 (606)
|+.+.++.+... ++|.. ...+.++++.+... .+||+||||+|.+.-+|+-.+.-.++| ++.|+||..|||..
T Consensus 179 ~l~vkat~liGe-hVGdg-ar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDVs--EiVNALLTelDgi~ 250 (368)
T COG1223 179 LLLVKATELIGE-HVGDG-ARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDVS--EIVNALLTELDGIK 250 (368)
T ss_pred eEEechHHHHHH-HhhhH-HHHHHHHHHHHHhc----CCeEEEehhhhhhhhhhhHHHhcccHH--HHHHHHHHhccCcc
Confidence 999999999964 88888 67889999888765 899999999999999988877777776 59999999999732
Q ss_pred eecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhh
Q 007362 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (606)
Q Consensus 433 ~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l 512 (606)
....+++|+++|..+
T Consensus 251 -------------------eneGVvtIaaTN~p~---------------------------------------------- 265 (368)
T COG1223 251 -------------------ENEGVVTIAATNRPE---------------------------------------------- 265 (368)
T ss_pred -------------------cCCceEEEeecCChh----------------------------------------------
Confidence 223467788777432
Q ss_pred hhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHH-
Q 007362 513 IAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA- 591 (606)
Q Consensus 513 ~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~- 591 (606)
.|+|.+.+||..-|.|.-.+.++...|++.+... ..+.++.. +++|++. .+++..|+|+.
T Consensus 266 ---~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~-------------~Plpv~~~-~~~~~~~--t~g~SgRdikek 326 (368)
T COG1223 266 ---LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK-------------FPLPVDAD-LRYLAAK--TKGMSGRDIKEK 326 (368)
T ss_pred ---hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh-------------CCCccccC-HHHHHHH--hCCCCchhHHHH
Confidence 2678888999999999999999999998864221 22334434 7777776 56777777653
Q ss_pred HHHHHHHHHHH
Q 007362 592 ILESILTEAMY 602 (606)
Q Consensus 592 ~Ie~~l~~al~ 602 (606)
++...+-.|+.
T Consensus 327 vlK~aLh~Ai~ 337 (368)
T COG1223 327 VLKTALHRAIA 337 (368)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 17
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.5e-23 Score=228.13 Aligned_cols=219 Identities=24% Similarity=0.334 Sum_probs=168.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 273 ~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
+.|.|+|++|+.|+++|..+.+. +......| -.++++||||||||||||++||++|++++.+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~---pe~F~r~G---------------i~ppkGVLlyGPPGC~KT~lAkalAne~~~n 495 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKH---PEKFARFG---------------ISPPKGVLLYGPPGCGKTLLAKALANEAGMN 495 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhc---hHHHHHhc---------------CCCCceEEEECCCCcchHHHHHHHhhhhcCC
Confidence 33788999999999999744322 11111111 2346899999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~ 432 (606)
|+.+.+.++. ++|+|++ |+.++++|++++.. .++||||||||.+..+|.+ +.+ . -.++++++||..|||..
T Consensus 496 FlsvkgpEL~-sk~vGeS-Er~ir~iF~kAR~~----aP~IiFfDEiDsi~~~R~g-~~~-~-v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 496 FLSVKGPELF-SKYVGES-ERAIREVFRKARQV----APCIIFFDEIDALAGSRGG-SSS-G-VTDRVLSQLLTEMDGLE 566 (693)
T ss_pred eeeccCHHHH-HHhcCch-HHHHHHHHHHHhhc----CCeEEehhhHHhHhhccCC-Ccc-c-hHHHHHHHHHHHccccc
Confidence 9999999999 6799999 89999999999875 7899999999999998763 222 2 23569999999999832
Q ss_pred eecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhh
Q 007362 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (606)
Q Consensus 433 ~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l 512 (606)
..+++++|.++|..+
T Consensus 567 -------------------~~k~V~ViAATNRpd---------------------------------------------- 581 (693)
T KOG0730|consen 567 -------------------ALKNVLVIAATNRPD---------------------------------------------- 581 (693)
T ss_pred -------------------ccCcEEEEeccCChh----------------------------------------------
Confidence 236777887777432
Q ss_pred hhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH-HHHHHHHccCCCCCChHHH
Q 007362 513 IAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARGL 589 (606)
Q Consensus 513 ~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~-al~~La~~a~~~~~GAR~L 589 (606)
.+++++++ |||.+|.++..+.+...+|++... ++ ..++++ .++.|++. +..|...+|
T Consensus 582 ---~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~-------------kk--mp~~~~vdl~~La~~--T~g~SGAel 641 (693)
T KOG0730|consen 582 ---MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCA-------------KK--MPFSEDVDLEELAQA--TEGYSGAEI 641 (693)
T ss_pred ---hcCHHHcCCcccceeEeecCccHHHHHHHHHHHH-------------hc--CCCCccccHHHHHHH--hccCChHHH
Confidence 25667776 999999999999999999987531 12 224444 57788876 566777899
Q ss_pred HHHHHHHHHHHHHh
Q 007362 590 RAILESILTEAMYE 603 (606)
Q Consensus 590 ~~~Ie~~l~~al~~ 603 (606)
..++++....+|.+
T Consensus 642 ~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 642 VAVCQEAALLALRE 655 (693)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888888765
No 18
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.3e-22 Score=233.41 Aligned_cols=285 Identities=23% Similarity=0.309 Sum_probs=209.4
Q ss_pred CCCcccCCCCCCCCCC----ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccccccc
Q 007362 247 GGGSRWGGSNLGEDLP----TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVE 322 (606)
Q Consensus 247 ~~~~~~~g~p~~~~~~----~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~ 322 (606)
..++.|+++|+..... ....|.+.|.+.|+||++|+.+|.++|..... +... +
T Consensus 532 ~~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~-----gl~~----------------~-- 588 (898)
T KOG1051|consen 532 EVVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRA-----GLKD----------------P-- 588 (898)
T ss_pred hhhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhc-----ccCC----------------C--
Confidence 3467899999988765 44558899999999999999999999963211 1111 0
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhh--------hcCCcccchHHHHHHHHHhhhhhhhhcCC
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT--------QAGYVGEDVESILYKLLAQAEFNVEAAQQ 391 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~--------~sg~vG~~~~~~l~~lf~~a~~~l~~a~~ 391 (606)
.+...++|.||.|+|||.||++||..+ .-.|+.+|++++. ..+|+|+.....+.+.+... +.
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavrrr-------P~ 661 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRR-------PY 661 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcC-------Cc
Confidence 124789999999999999999999998 3578999999632 34899998777776665544 45
Q ss_pred CEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHH
Q 007362 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKT 470 (606)
Q Consensus 392 ~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~ 470 (606)
+||+|||||+.++. +++.|+++|| |++++- .+..++.+|+|||+|+|... ..
T Consensus 662 sVVLfdeIEkAh~~--------------v~n~llq~lD~GrltDs-----------~Gr~Vd~kN~I~IMTsn~~~--~~ 714 (898)
T KOG1051|consen 662 SVVLFEEIEKAHPD--------------VLNILLQLLDRGRLTDS-----------HGREVDFKNAIFIMTSNVGS--SA 714 (898)
T ss_pred eEEEEechhhcCHH--------------HHHHHHHHHhcCccccC-----------CCcEeeccceEEEEecccch--Hh
Confidence 79999999999998 9999999999 655532 34478999999999988532 11
Q ss_pred HHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh----ccCcccccccCCeEEEcCCcCHHHHHHHHhhh
Q 007362 471 ISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA----YGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (606)
Q Consensus 471 i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~----~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~ 546 (606)
+..... ..++-..+.+. .......... ..+.++ ..+.|||++|+|.++.|.+++.+++.+|+...
T Consensus 715 i~~~~~--~~~~l~~~~~~---~~~~~~~k~~------v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~ 783 (898)
T KOG1051|consen 715 IANDAS--LEEKLLDMDEK---RGSYRLKKVQ------VSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQ 783 (898)
T ss_pred hhcccc--cccccccchhh---hhhhhhhhhh------hhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhH
Confidence 111110 01111100000 0000111111 122333 67999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 547 KNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 547 l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
+.++.+.+.. .++.+.+++.+...+..+.|+..+|||.|++.|++.|.+.|..
T Consensus 784 ~~e~~~r~~~----~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~ 836 (898)
T KOG1051|consen 784 LTEIEKRLEE----RELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAE 836 (898)
T ss_pred HHHHHHHhhh----hHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhh
Confidence 7777655544 3466779999999999999999999999999999999998864
No 19
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.4e-22 Score=210.46 Aligned_cols=176 Identities=27% Similarity=0.398 Sum_probs=136.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|-|+++.+++|.++|..+++. +.+...+|- .+|.+||||||||||||+||||+|+..+..|+
T Consensus 153 IGGL~~Qi~EirE~VELPL~~---PElF~~~GI---------------~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFI 214 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKN---PELFEELGI---------------DPPKGVLLYGPPGTGKTLLAKAVANQTDATFI 214 (406)
T ss_pred ccCHHHHHHHHHHHhcccccC---HHHHHHcCC---------------CCCCceEeeCCCCCcHHHHHHHHHhccCceEE
Confidence 899999999999999754332 222222222 23589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH---hce
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---EGT 431 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L---eg~ 431 (606)
++.+++|. .+|+|+. .++++++|..++.. .++||||||||++..+|-+...+.+ +++|..|+++| ||+
T Consensus 215 rvvgSElV-qKYiGEG-aRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gD---rEVQRTmleLL~qlDGF 285 (406)
T COG1222 215 RVVGSELV-QKYIGEG-ARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGD---REVQRTMLELLNQLDGF 285 (406)
T ss_pred EeccHHHH-HHHhccc-hHHHHHHHHHHhhc----CCeEEEEechhhhhcccccCCCCch---HHHHHHHHHHHHhccCC
Confidence 99999999 4699999 78999999999876 8999999999999988776554444 45666666655 552
Q ss_pred eeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchh
Q 007362 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSD 511 (606)
Q Consensus 432 ~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 511 (606)
- ...|+-+|+++|-.|
T Consensus 286 D-------------------~~~nvKVI~ATNR~D--------------------------------------------- 301 (406)
T COG1222 286 D-------------------PRGNVKVIMATNRPD--------------------------------------------- 301 (406)
T ss_pred C-------------------CCCCeEEEEecCCcc---------------------------------------------
Confidence 2 134666777777543
Q ss_pred hhhccCccccc--ccCCeEEEcCCcCHHHHHHHHhh
Q 007362 512 LIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTE 545 (606)
Q Consensus 512 l~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~ 545 (606)
.|+|+|+ +|||..|.|+..+++...+|++-
T Consensus 302 ----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~I 333 (406)
T COG1222 302 ----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKI 333 (406)
T ss_pred ----ccChhhcCCCcccceeecCCCCHHHHHHHHHH
Confidence 1455555 78999999998898888888764
No 20
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=9.5e-22 Score=204.66 Aligned_cols=232 Identities=20% Similarity=0.257 Sum_probs=160.2
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHH-HHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNH-YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~-~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~ 340 (606)
...+++...|++.++|++.+|++|.+.+... +.+++. ..|. .......++||+||||||||+
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~---~~g~--------------~~~~~~~~ill~G~pGtGKT~ 74 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRK---NLGL--------------TSSNPGLHMSFTGSPGTGKTT 74 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH---HcCC--------------CCCCCCceEEEECCCCCCHHH
Confidence 3566788999988999999999998877421 112211 1110 001123679999999999999
Q ss_pred HHHHHHHHhC-------CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccccc
Q 007362 341 LAKTLARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (606)
Q Consensus 341 lAralA~~l~-------~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~ 413 (606)
+|+++|+.+. .+++.++..++.. .|+|+.. ..+..++..+ .++||||||+|.+...+. .
T Consensus 75 lAr~la~~~~~~g~~~~~~~~~v~~~~l~~-~~~g~~~-~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~-----~ 140 (287)
T CHL00181 75 VALKMADILYKLGYIKKGHLLTVTRDDLVG-QYIGHTA-PKTKEVLKKA-------MGGVLFIDEAYYLYKPDN-----E 140 (287)
T ss_pred HHHHHHHHHHHcCCCCCCceEEecHHHHHH-HHhccch-HHHHHHHHHc-------cCCEEEEEccchhccCCC-----c
Confidence 9999999762 3688888888773 4777663 3344454443 568999999999864321 1
Q ss_pred CcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccc
Q 007362 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (606)
Q Consensus 414 ~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~ 493 (606)
...+.++++.|+++|+. ...++++|++++...|+.+.
T Consensus 141 ~~~~~e~~~~L~~~me~---------------------~~~~~~vI~ag~~~~~~~~~---------------------- 177 (287)
T CHL00181 141 RDYGSEAIEILLQVMEN---------------------QRDDLVVIFAGYKDRMDKFY---------------------- 177 (287)
T ss_pred cchHHHHHHHHHHHHhc---------------------CCCCEEEEEeCCcHHHHHHH----------------------
Confidence 12335699999999983 12457778877644333222
Q ss_pred cchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH--
Q 007362 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-- 571 (606)
Q Consensus 494 ~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a-- 571 (606)
.++|+|.+||+.+|.|++++.+++.+|+..++... ...+++++
T Consensus 178 ----------------------~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~-------------~~~l~~~~~~ 222 (287)
T CHL00181 178 ----------------------ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ-------------QYQLTPEAEK 222 (287)
T ss_pred ----------------------hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh-------------cCCCChhHHH
Confidence 15699999999999999999999999998753332 12244444
Q ss_pred --HHHHHHccCCCCCC-hHHHHHHHHHHHHHHHH
Q 007362 572 --LRVIAKKATAKNTG-ARGLRAILESILTEAMY 602 (606)
Q Consensus 572 --l~~La~~a~~~~~G-AR~L~~~Ie~~l~~al~ 602 (606)
++++.+..+..++| +|.+++++++.+...-.
T Consensus 223 ~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~ 256 (287)
T CHL00181 223 ALLDYIKKRMEQPLFANARSVRNALDRARMRQAN 256 (287)
T ss_pred HHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 44555556667888 99999999988876543
No 21
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.8e-22 Score=215.53 Aligned_cols=230 Identities=23% Similarity=0.333 Sum_probs=162.2
Q ss_pred ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHH
Q 007362 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (606)
Q Consensus 263 ~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lA 342 (606)
.|......-.++|.|.|+||++|.+.|. |. .++.+...+|. ..|++|||.||||||||+||
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVe--fL--kdP~kftrLGG---------------KLPKGVLLvGPPGTGKTlLA 354 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVE--FL--KDPTKFTRLGG---------------KLPKGVLLVGPPGTGKTLLA 354 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHH--Hh--cCcHHhhhccC---------------cCCCceEEeCCCCCchhHHH
Confidence 3444434433449999999999999885 22 22222222222 22589999999999999999
Q ss_pred HHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHH
Q 007362 343 KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (606)
Q Consensus 343 ralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~ 422 (606)
|++|.+.++||+....+++.+. |+|.. .+.++++|..++.. .+|||||||||.+..+|...+.. .-..++|
T Consensus 355 RAvAGEA~VPFF~~sGSEFdEm-~VGvG-ArRVRdLF~aAk~~----APcIIFIDEiDavG~kR~~~~~~---y~kqTlN 425 (752)
T KOG0734|consen 355 RAVAGEAGVPFFYASGSEFDEM-FVGVG-ARRVRDLFAAAKAR----APCIIFIDEIDAVGGKRNPSDQH---YAKQTLN 425 (752)
T ss_pred HHhhcccCCCeEeccccchhhh-hhccc-HHHHHHHHHHHHhc----CCeEEEEechhhhcccCCccHHH---HHHHHHH
Confidence 9999999999999999999865 99999 78999999998876 89999999999998886543321 3356999
Q ss_pred HHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcC-hHHHHHhhhcccCCCcCcccccccccccchhHhHH
Q 007362 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTS 501 (606)
Q Consensus 423 ~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~-l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~ 501 (606)
+||..|||+..+ .-+|+|.++|+.+ |++++
T Consensus 426 QLLvEmDGF~qN-------------------eGiIvigATNfpe~LD~AL------------------------------ 456 (752)
T KOG0734|consen 426 QLLVEMDGFKQN-------------------EGIIVIGATNFPEALDKAL------------------------------ 456 (752)
T ss_pred HHHHHhcCcCcC-------------------CceEEEeccCChhhhhHHh------------------------------
Confidence 999999986532 2467777777653 33332
Q ss_pred HHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCC
Q 007362 502 SLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATA 581 (606)
Q Consensus 502 ~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~ 581 (606)
..| +|||..|.++..+..-..+|+..+++.+ .+++++--.+...+ .
T Consensus 457 ---------------~RP---GRFD~~v~Vp~PDv~GR~eIL~~yl~ki---------------~~~~~VD~~iiARG-T 502 (752)
T KOG0734|consen 457 ---------------TRP---GRFDRHVTVPLPDVRGRTEILKLYLSKI---------------PLDEDVDPKIIARG-T 502 (752)
T ss_pred ---------------cCC---CccceeEecCCCCcccHHHHHHHHHhcC---------------CcccCCCHhHhccC-C
Confidence 223 7899988888888877788887653322 12222222223333 4
Q ss_pred CCCChHHHHHHHHHHHHHHHHh
Q 007362 582 KNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 582 ~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
.+|..-+|.++|.+....|-.+
T Consensus 503 ~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 503 PGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred CCCchHHHHHHHHHHHHHHHhc
Confidence 5555558888888777666544
No 22
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=3.3e-21 Score=200.38 Aligned_cols=232 Identities=19% Similarity=0.267 Sum_probs=161.0
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHH-HHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNH-YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~-~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~ 340 (606)
...+++.+.|++.++|++++|++|.+.+... +.+++. ..| -....+..+++|+||||||||+
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~---~~g--------------~~~~~~~~~vll~G~pGTGKT~ 73 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQ---RLG--------------LASAAPTLHMSFTGNPGTGKTT 73 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH---HhC--------------CCcCCCCceEEEEcCCCCCHHH
Confidence 4667888889877999999999998876521 112111 111 0111123689999999999999
Q ss_pred HHHHHHHHhC-------CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccccc
Q 007362 341 LAKTLARHVN-------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (606)
Q Consensus 341 lAralA~~l~-------~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~ 413 (606)
+|+++|+.+. .+|+.+++.++.. .|+|+.. ..+..+++.+ .++||||||+|.+...+..
T Consensus 74 lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~-~~~g~~~-~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~----- 139 (284)
T TIGR02880 74 VALRMAQILHRLGYVRKGHLVSVTRDDLVG-QYIGHTA-PKTKEILKRA-------MGGVLFIDEAYYLYRPDNE----- 139 (284)
T ss_pred HHHHHHHHHHHcCCcccceEEEecHHHHhH-hhcccch-HHHHHHHHHc-------cCcEEEEechhhhccCCCc-----
Confidence 9999998772 3789999888774 5778763 3444555443 5689999999988543211
Q ss_pred CcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccc
Q 007362 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (606)
Q Consensus 414 ~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~ 493 (606)
.....++++.|++.|+.. ..++++|++++...++.+.
T Consensus 140 ~~~~~~~~~~Ll~~le~~---------------------~~~~~vI~a~~~~~~~~~~---------------------- 176 (284)
T TIGR02880 140 RDYGQEAIEILLQVMENQ---------------------RDDLVVILAGYKDRMDSFF---------------------- 176 (284)
T ss_pred cchHHHHHHHHHHHHhcC---------------------CCCEEEEEeCCcHHHHHHH----------------------
Confidence 112345899999999831 1456777776643222221
Q ss_pred cchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHH
Q 007362 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALR 573 (606)
Q Consensus 494 ~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~ 573 (606)
.++|+|.+||+..|.|++|+.+|+.+|+..++... ...+++++++
T Consensus 177 ----------------------~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~-------------~~~l~~~a~~ 221 (284)
T TIGR02880 177 ----------------------ESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ-------------QYRFSAEAEE 221 (284)
T ss_pred ----------------------hhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh-------------ccccCHHHHH
Confidence 25799999999999999999999999988653332 1336777777
Q ss_pred HHHHc----cCCCCCC-hHHHHHHHHHHHHHHHH
Q 007362 574 VIAKK----ATAKNTG-ARGLRAILESILTEAMY 602 (606)
Q Consensus 574 ~La~~----a~~~~~G-AR~L~~~Ie~~l~~al~ 602 (606)
.|.++ .+...+| +|.|++++++.+...-.
T Consensus 222 ~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~ 255 (284)
T TIGR02880 222 AFADYIALRRTQPHFANARSIRNAIDRARLRQAN 255 (284)
T ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 77665 3345555 89999999998876543
No 23
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.6e-21 Score=217.08 Aligned_cols=219 Identities=29% Similarity=0.430 Sum_probs=158.8
Q ss_pred cCCHHHHHHHHHHHHHHHHH--HHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 275 VIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~--rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
|-|.+++|.+|.+.|..+++ .++..++++. .+||||||||||||++|||+|.++...
T Consensus 674 VGGLeevK~eIldTIqlPL~hpeLfssglrkR---------------------SGILLYGPPGTGKTLlAKAVATEcsL~ 732 (953)
T KOG0736|consen 674 VGGLEEVKTEILDTIQLPLKHPELFSSGLRKR---------------------SGILLYGPPGTGKTLLAKAVATECSLN 732 (953)
T ss_pred ccCHHHHHHHHHHHhcCcccChhhhhcccccc---------------------ceeEEECCCCCchHHHHHHHHhhceee
Confidence 89999999999999975333 3444444432 789999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~ 432 (606)
|+++.+-++. ..|+|++ |+.++++|++++.. .+|||||||+|.+.+.|....++..+.++ +.++||..|||-.
T Consensus 733 FlSVKGPELL-NMYVGqS-E~NVR~VFerAR~A----~PCVIFFDELDSlAP~RG~sGDSGGVMDR-VVSQLLAELDgls 805 (953)
T KOG0736|consen 733 FLSVKGPELL-NMYVGQS-EENVREVFERARSA----APCVIFFDELDSLAPNRGRSGDSGGVMDR-VVSQLLAELDGLS 805 (953)
T ss_pred EEeecCHHHH-HHHhcch-HHHHHHHHHHhhcc----CCeEEEeccccccCccCCCCCCccccHHH-HHHHHHHHhhccc
Confidence 9999999999 5699999 88999999999865 99999999999999999887777777655 8899999999722
Q ss_pred eecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhh
Q 007362 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (606)
Q Consensus 433 ~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l 512 (606)
.. +++.+.+|.++|..||
T Consensus 806 ~~-----------------~s~~VFViGATNRPDL--------------------------------------------- 823 (953)
T KOG0736|consen 806 DS-----------------SSQDVFVIGATNRPDL--------------------------------------------- 823 (953)
T ss_pred CC-----------------CCCceEEEecCCCccc---------------------------------------------
Confidence 10 3445555656665442
Q ss_pred hhccCccccc--ccCCeEEEcCCcCH-HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH-HHHHHHHccCCCCCChHH
Q 007362 513 IAYGLIPEFV--GRFPILVSLTALTE-DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARG 588 (606)
Q Consensus 513 ~~~~l~PeLl--~R~d~iI~f~~Ls~-eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~-al~~La~~a~~~~~GAR~ 588 (606)
++|.|+ +|||..+.+.+-.. +....|++ ++.++|+ ++++ -+..|++++ ..++..-+
T Consensus 824 ----LDpALLRPGRFDKLvyvG~~~d~esk~~vL~----AlTrkFk-----------LdedVdL~eiAk~c-p~~~TGAD 883 (953)
T KOG0736|consen 824 ----LDPALLRPGRFDKLVYVGPNEDAESKLRVLE----ALTRKFK-----------LDEDVDLVEIAKKC-PPNMTGAD 883 (953)
T ss_pred ----cChhhcCCCccceeEEecCCccHHHHHHHHH----HHHHHcc-----------CCCCcCHHHHHhhC-CcCCchhH
Confidence 334443 68888777766543 44445544 2333321 2222 155666663 55554446
Q ss_pred HHHHHHHHHHHHHHh
Q 007362 589 LRAILESILTEAMYE 603 (606)
Q Consensus 589 L~~~Ie~~l~~al~~ 603 (606)
|-.++.+..+.|+..
T Consensus 884 lYsLCSdA~l~AikR 898 (953)
T KOG0736|consen 884 LYSLCSDAMLAAIKR 898 (953)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777776643
No 24
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.5e-21 Score=212.78 Aligned_cols=219 Identities=25% Similarity=0.382 Sum_probs=156.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|-++++++.+|..+|..+.++ +...+.+|. ..+.+||||||||||||+|||++|++.+..|+
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~---pd~~k~lGi---------------~~PsGvLL~GPPGCGKTLlAKAVANEag~NFi 574 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKR---PDLFKALGI---------------DAPSGVLLCGPPGCGKTLLAKAVANEAGANFI 574 (802)
T ss_pred cccHHHHHHHHHHHHhhhccC---HHHHHHhCC---------------CCCCceEEeCCCCccHHHHHHHHhhhccCceE
Confidence 899999999999999755443 111111221 12589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.+.+-+|+ ++|||++ +..++.+|+.++.. .+|||||||+|.|.+.|.... .....++.|+||..|||-.
T Consensus 575 sVKGPELl-NkYVGES-ErAVR~vFqRAR~s----aPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~-- 643 (802)
T KOG0733|consen 575 SVKGPELL-NKYVGES-ERAVRQVFQRARAS----APCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLE-- 643 (802)
T ss_pred eecCHHHH-HHHhhhH-HHHHHHHHHHhhcC----CCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccc--
Confidence 99999999 6799999 88999999999876 899999999999999876544 2233569999999999722
Q ss_pred cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~ 514 (606)
+-+.+.+|.++|-.|+
T Consensus 644 -----------------~R~gV~viaATNRPDi----------------------------------------------- 659 (802)
T KOG0733|consen 644 -----------------ERRGVYVIAATNRPDI----------------------------------------------- 659 (802)
T ss_pred -----------------cccceEEEeecCCCcc-----------------------------------------------
Confidence 3345556666664442
Q ss_pred ccCccccc--ccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH-HHHHHHHccCCCCCChHHHHH
Q 007362 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK-ALRVIAKKATAKNTGARGLRA 591 (606)
Q Consensus 515 ~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~-al~~La~~a~~~~~GAR~L~~ 591 (606)
++|.+| +|||.++.+...+.+|...|++.. . ++.+..++++ -++.|+...--.+|..-.|..
T Consensus 660 --IDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~----t---------kn~k~pl~~dVdl~eia~~~~c~gftGADLaa 724 (802)
T KOG0733|consen 660 --IDPAILRPGRLDKLLYVGLPNAEERVAILKTI----T---------KNTKPPLSSDVDLDEIARNTKCEGFTGADLAA 724 (802)
T ss_pred --cchhhcCCCccCceeeecCCCHHHHHHHHHHH----h---------ccCCCCCCcccCHHHHhhcccccCCchhhHHH
Confidence 223333 688888888888888888887642 1 1122223332 255566554333454447777
Q ss_pred HHHHHHHHHH
Q 007362 592 ILESILTEAM 601 (606)
Q Consensus 592 ~Ie~~l~~al 601 (606)
++++.-..+|
T Consensus 725 LvreAsi~AL 734 (802)
T KOG0733|consen 725 LVREASILAL 734 (802)
T ss_pred HHHHHHHHHH
Confidence 7776555444
No 25
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.87 E-value=4.1e-21 Score=224.29 Aligned_cols=255 Identities=21% Similarity=0.256 Sum_probs=181.6
Q ss_pred CcccCCCCCCCCCC---ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccC
Q 007362 249 GSRWGGSNLGEDLP---TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEK 325 (606)
Q Consensus 249 ~~~~~g~p~~~~~~---~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~ 325 (606)
+..+.++|+..... ..+.+.+.|++.++||+++|+.|.+.+.... +. . . ...
T Consensus 293 l~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~--~~-~-~---------------------~~~ 347 (775)
T TIGR00763 293 LDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQK--LR-G-K---------------------MKG 347 (775)
T ss_pred HHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHH--hh-c-C---------------------CCC
Confidence 34566777665443 4566788999999999999999988664221 10 0 0 012
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh--------cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~--------sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfID 397 (606)
.+++|+||||||||++|++||+.++.+|+.+++..+.. ..|+|...+. +.+.+..+.. ...|||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~-i~~~l~~~~~-----~~~villD 421 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR-IIQGLKKAKT-----KNPLFLLD 421 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCch-HHHHHHHhCc-----CCCEEEEe
Confidence 57999999999999999999999999999887654321 2566666443 3344443321 34699999
Q ss_pred ccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcc
Q 007362 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD 477 (606)
Q Consensus 398 EiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~ 477 (606)
|||++....+ .+ ..++|+++||..+ ...+.+....+.++.++++||+|+|..
T Consensus 422 Eidk~~~~~~-----~~-----~~~aLl~~ld~~~------~~~f~d~~~~~~~d~s~v~~I~TtN~~------------ 473 (775)
T TIGR00763 422 EIDKIGSSFR-----GD-----PASALLEVLDPEQ------NNAFSDHYLDVPFDLSKVIFIATANSI------------ 473 (775)
T ss_pred chhhcCCccC-----CC-----HHHHHHHhcCHHh------cCccccccCCceeccCCEEEEEecCCc------------
Confidence 9999986421 11 5688999998311 111222233456788999999998842
Q ss_pred cCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHH
Q 007362 478 SSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRL 557 (606)
Q Consensus 478 ~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~ 557 (606)
..++|+|++||. +|.|++++.+++.+|+..++ ..+..+.
T Consensus 474 -------------------------------------~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l---~~~~~~~ 512 (775)
T TIGR00763 474 -------------------------------------DTIPRPLLDRME-VIELSGYTEEEKLEIAKKYL---IPKALED 512 (775)
T ss_pred -------------------------------------hhCCHHHhCCee-EEecCCCCHHHHHHHHHHHH---HHHHHHH
Confidence 127899999995 78999999999999998753 3333332
Q ss_pred HhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHhc
Q 007362 558 FSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEV 604 (606)
Q Consensus 558 ~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~~ 604 (606)
.......+.++++++.+|++ .|....|+|.|++.|++++.....++
T Consensus 513 ~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~~~~~~ 558 (775)
T TIGR00763 513 HGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRKAAVKL 558 (775)
T ss_pred cCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHHHHHHH
Confidence 22223367899999999999 59999999999999999998887764
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.1e-22 Score=200.04 Aligned_cols=163 Identities=25% Similarity=0.443 Sum_probs=125.7
Q ss_pred cCCHHHHHHHHHHHHHHH--HHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 275 VIGQEKAKKVLSVAVYNH--YKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~--~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
|.|+|.||++|+++|..+ +.+++...+..+ ++|||||||||||++||+++|.+.+..
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw---------------------rgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPW---------------------RGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcc---------------------eeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 899999999999999743 335555555444 899999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~ 432 (606)
|++++.++|+ ++|.|++ ++.++++|+.++.+ .++||||||||.++..|..++ ..+.+++...||-.|.|.-
T Consensus 194 FFSvSSSDLv-SKWmGES-EkLVknLFemARe~----kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 194 FFSVSSSDLV-SKWMGES-EKLVKNLFEMAREN----KPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred eEEeehHHHH-HHHhccH-HHHHHHHHHHHHhc----CCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccc
Confidence 9999999999 6799999 89999999999887 899999999999888765433 2333568888999998621
Q ss_pred eecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 433 ~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
. +....+++..+|+.|++ +.+|+ |||+.-|+...|
T Consensus 265 ~----------d~~gvLVLgATNiPw~L-------DsAIR-RRFekRIYIPLP 299 (439)
T KOG0739|consen 265 N----------DNDGVLVLGATNIPWVL-------DSAIR-RRFEKRIYIPLP 299 (439)
T ss_pred c----------CCCceEEEecCCCchhH-------HHHHH-HHhhcceeccCC
Confidence 1 23345566777777764 34444 445544554433
No 27
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.1e-21 Score=215.92 Aligned_cols=253 Identities=22% Similarity=0.303 Sum_probs=198.0
Q ss_pred ccCCCCCCCCC---CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCc
Q 007362 251 RWGGSNLGEDL---PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSN 327 (606)
Q Consensus 251 ~~~g~p~~~~~---~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~ 327 (606)
+....|+.... .+.++..+.|++...|++++|+.+.+.+.-. .+ .. ..+ ...
T Consensus 298 wll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~--~l-~~-~~k---------------------GpI 352 (782)
T COG0466 298 WLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQ--KL-TK-KLK---------------------GPI 352 (782)
T ss_pred HHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHH--HH-hc-cCC---------------------CcE
Confidence 34455655543 3566778899999999999999999887411 11 11 111 267
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhc--------CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA--------GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~s--------g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
++|+||||+|||+|++.||+.++..|++++..-+.+. .|+|.-.++++..+-.... ...+++||||
T Consensus 353 LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~------~NPv~LLDEI 426 (782)
T COG0466 353 LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV------KNPVFLLDEI 426 (782)
T ss_pred EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCC------cCCeEEeech
Confidence 9999999999999999999999999999887754432 6888887777755543332 4579999999
Q ss_pred chhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccC
Q 007362 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSS 479 (606)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~ 479 (606)
|++..+-+. + --++||+.|| |+....+.+..-.+.+|.+++.||+|+|..+
T Consensus 427 DKm~ss~rG-----D-----PaSALLEVLD------PEQN~~F~DhYLev~yDLS~VmFiaTANsl~------------- 477 (782)
T COG0466 427 DKMGSSFRG-----D-----PASALLEVLD------PEQNNTFSDHYLEVPYDLSKVMFIATANSLD------------- 477 (782)
T ss_pred hhccCCCCC-----C-----hHHHHHhhcC------HhhcCchhhccccCccchhheEEEeecCccc-------------
Confidence 999876332 2 6789999999 4555667777778889999999999998532
Q ss_pred CCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHh
Q 007362 480 IGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFS 559 (606)
Q Consensus 480 igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~ 559 (606)
.++.+|++|+ ++|.+..|+++|..+|++++ |..+..+...
T Consensus 478 ------------------------------------tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~---LiPk~~~~~g 517 (782)
T COG0466 478 ------------------------------------TIPAPLLDRM-EVIRLSGYTEDEKLEIAKRH---LIPKQLKEHG 517 (782)
T ss_pred ------------------------------------cCChHHhcce-eeeeecCCChHHHHHHHHHh---cchHHHHHcC
Confidence 2677999999 69999999999999999975 6666666555
Q ss_pred cCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHhc
Q 007362 560 MNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEV 604 (606)
Q Consensus 560 ~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~~ 604 (606)
....++.++++++..|.++ |+.+-|+|+|++.|.+++-.+..++
T Consensus 518 L~~~el~i~d~ai~~iI~~-YTREAGVR~LeR~i~ki~RK~~~~i 561 (782)
T COG0466 518 LKKGELTITDEAIKDIIRY-YTREAGVRNLEREIAKICRKAAKKI 561 (782)
T ss_pred CCccceeecHHHHHHHHHH-HhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 5566789999999999987 8999999999999999988777653
No 28
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=1.2e-20 Score=193.46 Aligned_cols=225 Identities=19% Similarity=0.341 Sum_probs=154.4
Q ss_pred HhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 269 ~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
+.|++ ++|++.+|++|.+.+... .+.....+.| ........+++|+||||||||++|+++|+.
T Consensus 3 ~~l~~-~~Gl~~vk~~i~~~~~~~--~~~~~~~~~g--------------~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 3 RELSR-MVGLDEVKALIKEIYAWI--QINEKRKEEG--------------LKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HHHHH-hcChHHHHHHHHHHHHHH--HHHHHHHHcC--------------CCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 45666 799999999998877422 1111111111 111122378999999999999999999987
Q ss_pred h-------CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHH
Q 007362 349 V-------NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (606)
Q Consensus 349 l-------~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq 421 (606)
+ ...++.+++.++.. .|+|+. ...+..+|..+ .++||||||+|.+... +......+++
T Consensus 66 l~~~~~~~~~~~v~~~~~~l~~-~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~------~~~~~~~~~i 130 (261)
T TIGR02881 66 FKEMNVLSKGHLIEVERADLVG-EYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARG------GEKDFGKEAI 130 (261)
T ss_pred HHhcCcccCCceEEecHHHhhh-hhccch-HHHHHHHHHhc-------cCCEEEEechhhhccC------CccchHHHHH
Confidence 5 23678888888773 577776 45555666544 4689999999998632 1112234588
Q ss_pred HHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHH
Q 007362 422 QALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTS 501 (606)
Q Consensus 422 ~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~ 501 (606)
+.|++.|+. ...++++|++++..+++.+.
T Consensus 131 ~~Ll~~~e~---------------------~~~~~~vila~~~~~~~~~~------------------------------ 159 (261)
T TIGR02881 131 DTLVKGMED---------------------NRNEFVLILAGYSDEMDYFL------------------------------ 159 (261)
T ss_pred HHHHHHHhc---------------------cCCCEEEEecCCcchhHHHH------------------------------
Confidence 999999984 12446677776644332221
Q ss_pred HHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHcc--
Q 007362 502 SLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA-- 579 (606)
Q Consensus 502 ~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a-- 579 (606)
.+.|+|.+||+..|.|++++.+++.+|+...+. . ..+.++++++++|++..
T Consensus 160 --------------~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~-----------~--~~~~l~~~a~~~l~~~~~~ 212 (261)
T TIGR02881 160 --------------SLNPGLRSRFPISIDFPDYTVEELMEIAERMVK-----------E--REYKLTEEAKWKLREHLYK 212 (261)
T ss_pred --------------hcChHHHhccceEEEECCCCHHHHHHHHHHHHH-----------H--cCCccCHHHHHHHHHHHHH
Confidence 167899999999999999999999999885421 1 23458899999886542
Q ss_pred ----CCCCC-ChHHHHHHHHHHHHHHHHh
Q 007362 580 ----TAKNT-GARGLRAILESILTEAMYE 603 (606)
Q Consensus 580 ----~~~~~-GAR~L~~~Ie~~l~~al~~ 603 (606)
....+ .+|.++++++..+......
T Consensus 213 ~~~~~~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 213 VDQLSSREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred HHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 12333 4899999999988776543
No 29
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.5e-21 Score=217.82 Aligned_cols=182 Identities=25% Similarity=0.379 Sum_probs=141.4
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|+|+||++|.+.|. |. .++. .+.+.-+..|+++||+||||||||+||||+|.+.+
T Consensus 310 FkD-VAG~deAK~El~E~V~--fL--KNP~---------------~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg 369 (774)
T KOG0731|consen 310 FKD-VAGVDEAKEELMEFVK--FL--KNPE---------------QYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG 369 (774)
T ss_pred ccc-ccCcHHHHHHHHHHHH--Hh--cCHH---------------HHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC
Confidence 444 8999999999999994 21 1121 12222334469999999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhh-ccccccCcchhHHHHHHHHHHh
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAE-SLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~-~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+||+.++++++++. ++|.. ...++.+|..++.+ .|+||||||||.+...|. ....+.+.+.+..+|+||..||
T Consensus 370 VPF~svSGSEFvE~-~~g~~-asrvr~lf~~ar~~----aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 370 VPFFSVSGSEFVEM-FVGVG-ASRVRDLFPLARKN----APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred CceeeechHHHHHH-hcccc-hHHHHHHHHHhhcc----CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 99999999999965 77777 78899999999877 899999999999998874 3345667777899999999999
Q ss_pred ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcc
Q 007362 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (606)
Q Consensus 430 g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~ 509 (606)
|+.. ++.+||++++|-.|+
T Consensus 444 gf~~-------------------~~~vi~~a~tnr~d~------------------------------------------ 462 (774)
T KOG0731|consen 444 GFET-------------------SKGVIVLAATNRPDI------------------------------------------ 462 (774)
T ss_pred CCcC-------------------CCcEEEEeccCCccc------------------------------------------
Confidence 8532 255777777775431
Q ss_pred hhhhhccCccccc--ccCCeEEEcCCcCHHHHHHHHhhh
Q 007362 510 SDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEP 546 (606)
Q Consensus 510 ~~l~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~ 546 (606)
++++|+ +|||..|.+...+.....+|++..
T Consensus 463 -------ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h 494 (774)
T KOG0731|consen 463 -------LDPALLRPGRFDRQIQIDLPDVKGRASILKVH 494 (774)
T ss_pred -------cCHHhcCCCccccceeccCCchhhhHHHHHHH
Confidence 333333 788888888888888878887753
No 30
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.86 E-value=9.8e-21 Score=220.10 Aligned_cols=249 Identities=18% Similarity=0.262 Sum_probs=180.9
Q ss_pred CCCCCCCC---CCChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEE
Q 007362 253 GGSNLGED---LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVL 329 (606)
Q Consensus 253 ~g~p~~~~---~~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vL 329 (606)
...|+... .....+..+.|++.+.|++++|+.+.+.+.... . .... ....++
T Consensus 299 ~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~-~---~~~~---------------------~g~~i~ 353 (784)
T PRK10787 299 VQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQS-R---VNKI---------------------KGPILC 353 (784)
T ss_pred HhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHH-h---cccC---------------------CCceEE
Confidence 34455443 346667889999999999999999988774210 0 0001 125799
Q ss_pred EEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh--------cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccch
Q 007362 330 LMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 330 L~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~--------sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
|+||||+|||++++.+|+.++.+|+++++....+ ..|+|...+..+ ..+..+. ....||||||||+
T Consensus 354 l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~-~~l~~~~-----~~~~villDEidk 427 (784)
T PRK10787 354 LVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLI-QKMAKVG-----VKNPLFLLDEIDK 427 (784)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHH-HHHHhcC-----CCCCEEEEEChhh
Confidence 9999999999999999999999999888664332 135555544333 2222222 1346999999999
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
+....+ .+ .+++|+++|| +... .+.+.+-.+.+|.++++||+|+|..
T Consensus 428 ~~~~~~-----g~-----~~~aLlevld~~~~~-------~~~d~~~~~~~dls~v~~i~TaN~~--------------- 475 (784)
T PRK10787 428 MSSDMR-----GD-----PASALLEVLDPEQNV-------AFSDHYLEVDYDLSDVMFVATSNSM--------------- 475 (784)
T ss_pred cccccC-----CC-----HHHHHHHHhccccEE-------EEecccccccccCCceEEEEcCCCC---------------
Confidence 976521 11 6899999998 3222 2333444567889999999988742
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
.++|+|++|+ .+|.|.+|+.+++.+|+++++ ..+..+....
T Consensus 476 -----------------------------------~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L---~~k~~~~~~l 516 (784)
T PRK10787 476 -----------------------------------NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHL---LPKQIERNAL 516 (784)
T ss_pred -----------------------------------CCCHHHhcce-eeeecCCCCHHHHHHHHHHhh---hHHHHHHhCC
Confidence 2789999999 589999999999999999864 3222222344
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHhc
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEV 604 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~~ 604 (606)
.+.++.++++++++|++ .|+..+|||.|++.|++++.+.+.++
T Consensus 517 ~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l~~~ 559 (784)
T PRK10787 517 KKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAVKQL 559 (784)
T ss_pred CCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 55678999999999997 79999999999999999998887653
No 31
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.86 E-value=1e-20 Score=188.08 Aligned_cols=202 Identities=27% Similarity=0.429 Sum_probs=128.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ ++||++++..+...+... ..++ ....|+|||||||+||||||+.||+++
T Consensus 22 ~L~e-fiGQ~~l~~~l~i~i~aa--------~~r~------------------~~l~h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 22 SLDE-FIGQEHLKGNLKILIRAA--------KKRG------------------EALDHMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp SCCC-S-S-HHHHHHHHHHHHHH--------HCTT------------------S---EEEEESSTTSSHHHHHHHHHHHC
T ss_pred CHHH-ccCcHHHHhhhHHHHHHH--------HhcC------------------CCcceEEEECCCccchhHHHHHHHhcc
Confidence 4555 799999999987766421 1110 012689999999999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+.+|..+++..+... ..+..++... .++.||||||||++.+. +|+.|+..||
T Consensus 75 ~~~~~~~sg~~i~k~--------~dl~~il~~l------~~~~ILFIDEIHRlnk~--------------~qe~LlpamE 126 (233)
T PF05496_consen 75 GVNFKITSGPAIEKA--------GDLAAILTNL------KEGDILFIDEIHRLNKA--------------QQEILLPAME 126 (233)
T ss_dssp T--EEEEECCC--SC--------HHHHHHHHT--------TT-EEEECTCCC--HH--------------HHHHHHHHHH
T ss_pred CCCeEeccchhhhhH--------HHHHHHHHhc------CCCcEEEEechhhccHH--------------HHHHHHHHhc
Confidence 999988877544321 1222333222 25679999999999998 9999999999
Q ss_pred ceeeec-CCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhc
Q 007362 430 GTIVNV-PEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (606)
Q Consensus 430 g~~~~i-~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~ 508 (606)
++.+++ -+.| .....+.++...+.+|.+++-.
T Consensus 127 d~~idiiiG~g----~~ar~~~~~l~~FTligATTr~------------------------------------------- 159 (233)
T PF05496_consen 127 DGKIDIIIGKG----PNARSIRINLPPFTLIGATTRA------------------------------------------- 159 (233)
T ss_dssp CSEEEEEBSSS----SS-BEEEEE----EEEEEESSG-------------------------------------------
T ss_pred cCeEEEEeccc----cccceeeccCCCceEeeeeccc-------------------------------------------
Confidence 666543 2332 2345677888888888766522
Q ss_pred chhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHH
Q 007362 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARG 588 (606)
Q Consensus 509 ~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~ 588 (606)
..+.++|.+||..+..+..|+.+|+.+|+.+. .....+.+++++..+|+..+ .-..|-
T Consensus 160 ------g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~-------------a~~l~i~i~~~~~~~Ia~rs---rGtPRi 217 (233)
T PF05496_consen 160 ------GLLSSPLRDRFGIVLRLEFYSEEELAKIVKRS-------------ARILNIEIDEDAAEEIARRS---RGTPRI 217 (233)
T ss_dssp ------CCTSHCCCTTSSEEEE----THHHHHHHHHHC-------------CHCTT-EE-HHHHHHHHHCT---TTSHHH
T ss_pred ------cccchhHHhhcceecchhcCCHHHHHHHHHHH-------------HHHhCCCcCHHHHHHHHHhc---CCChHH
Confidence 12778999999999999999999999999853 23445779999999999983 223455
Q ss_pred HHHHHHH
Q 007362 589 LRAILES 595 (606)
Q Consensus 589 L~~~Ie~ 595 (606)
..+++++
T Consensus 218 Anrll~r 224 (233)
T PF05496_consen 218 ANRLLRR 224 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 32
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.8e-20 Score=207.43 Aligned_cols=251 Identities=24% Similarity=0.338 Sum_probs=196.8
Q ss_pred CCCCCCCCC---CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEE
Q 007362 253 GGSNLGEDL---PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVL 329 (606)
Q Consensus 253 ~g~p~~~~~---~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vL 329 (606)
+..|+.... .......+.|++...|++++|+.+.+.+.-. ++. ..-. ...++
T Consensus 388 t~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~--kLr--gs~q---------------------GkIlC 442 (906)
T KOG2004|consen 388 TSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVG--KLR--GSVQ---------------------GKILC 442 (906)
T ss_pred HhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHH--hhc--ccCC---------------------CcEEE
Confidence 444554432 3445567889999999999999999988521 221 1111 27899
Q ss_pred EEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh--------cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccch
Q 007362 330 LMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ--------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 330 L~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~--------sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
|+||||+|||++||.||+.+|..|++++..-+.+ ..|+|.-.++++..+-.-.. ...+++|||||+
T Consensus 443 f~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t------~NPliLiDEvDK 516 (906)
T KOG2004|consen 443 FVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT------ENPLILIDEVDK 516 (906)
T ss_pred EeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC------CCceEEeehhhh
Confidence 9999999999999999999999999988765443 26888888877765543332 457999999999
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCC
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~ig 481 (606)
+... ...+ --.+||++|| |+....+.+.+-.|.+|.+.++||||+|..+
T Consensus 517 lG~g-----~qGD-----PasALLElLD------PEQNanFlDHYLdVp~DLSkVLFicTAN~id--------------- 565 (906)
T KOG2004|consen 517 LGSG-----HQGD-----PASALLELLD------PEQNANFLDHYLDVPVDLSKVLFICTANVID--------------- 565 (906)
T ss_pred hCCC-----CCCC-----hHHHHHHhcC------hhhccchhhhccccccchhheEEEEeccccc---------------
Confidence 8743 1222 6689999999 5556677788888999999999999998542
Q ss_pred cCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 007362 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMN 561 (606)
Q Consensus 482 f~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~ 561 (606)
.++|+|++|+ ++|.+.-|..+|..+|+.++ |..+..+.+...
T Consensus 566 ----------------------------------tIP~pLlDRM-EvIelsGYv~eEKv~IA~~y---Lip~a~~~~gl~ 607 (906)
T KOG2004|consen 566 ----------------------------------TIPPPLLDRM-EVIELSGYVAEEKVKIAERY---LIPQALKDCGLK 607 (906)
T ss_pred ----------------------------------cCChhhhhhh-heeeccCccHHHHHHHHHHh---hhhHHHHHcCCC
Confidence 2788999999 68999999999999999985 777777766666
Q ss_pred CcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHhc
Q 007362 562 NVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEV 604 (606)
Q Consensus 562 ~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~~ 604 (606)
.-.+.++++++..|.++ |..+-|+|.|++-|+.++..+-+++
T Consensus 608 ~e~v~is~~al~~lI~~-YcrEaGVRnLqk~iekI~Rk~Al~v 649 (906)
T KOG2004|consen 608 PEQVKISDDALLALIER-YCREAGVRNLQKQIEKICRKVALKV 649 (906)
T ss_pred HHhcCccHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 66788999999999987 7888999999999999998876553
No 33
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.9e-20 Score=195.10 Aligned_cols=169 Identities=25% Similarity=0.361 Sum_probs=129.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
.+++|||||||||||||++||+..+..|..+++.... .+.++++++.+.......++.||||||||++.+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 7899999999999999999999999999999987532 4567888888876666667899999999999998
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.|+.||..||.+ .+++|.+++-+
T Consensus 120 --------------QQD~lLp~vE~G-----------------------~iilIGATTEN-------------------- 142 (436)
T COG2256 120 --------------QQDALLPHVENG-----------------------TIILIGATTEN-------------------- 142 (436)
T ss_pred --------------hhhhhhhhhcCC-----------------------eEEEEeccCCC--------------------
Confidence 999999999932 23445444311
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
-.+.++|.+++|. .++.|.+|+.+++.+++.+.+....+. ..+..+
T Consensus 143 ---------------------------PsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rg------l~~~~~ 188 (436)
T COG2256 143 ---------------------------PSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERG------LGGQII 188 (436)
T ss_pred ---------------------------CCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcC------CCcccc
Confidence 1344788889998 588999999999999998642222211 123446
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.++++++++|+..+ +-.+|..-+.+|-++
T Consensus 189 ~i~~~a~~~l~~~s---~GD~R~aLN~LE~~~ 217 (436)
T COG2256 189 VLDEEALDYLVRLS---NGDARRALNLLELAA 217 (436)
T ss_pred cCCHHHHHHHHHhc---CchHHHHHHHHHHHH
Confidence 69999999999873 445787777777544
No 34
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.82 E-value=1.3e-20 Score=182.16 Aligned_cols=165 Identities=40% Similarity=0.583 Sum_probs=120.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCC----ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~----~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
..++||.||+|||||.+|++||+.+.. +++.+||+.+.+ +.+....+..+.......+...+.+||||||||
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEid 78 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEID 78 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHHh
Confidence 478999999999999999999999986 999999999875 222244556666666666666777899999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
|+++. ...+.++++..+|+.||++||+..+.- . ....++++|++||||+|+.........+..
T Consensus 79 Ka~~~---~~~~~~v~~~~V~~~LL~~le~g~~~d-~---------~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~---- 141 (171)
T PF07724_consen 79 KAHPS---NSGGADVSGEGVQNSLLQLLEGGTLTD-S---------YGRTVDTSNIIFIMTSNFGAEEIIDASRSG---- 141 (171)
T ss_dssp GCSHT---TTTCSHHHHHHHHHHHHHHHHHSEEEE-T---------TCCEEEGTTEEEEEEESSSTHHHHHCHHHC----
T ss_pred hcccc---ccccchhhHHHHHHHHHHHhcccceec-c---------cceEEEeCCceEEEecccccchhhhhhccc----
Confidence 99985 445778888889999999999655541 1 225799999999999999875443322111
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeE
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPIL 528 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~i 528 (606)
... .........++++++|.|||++|||.+
T Consensus 142 ----------------~~~--~~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 142 ----------------EAI--EQEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp ----------------TCC--HHHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred ----------------ccc--HHHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 000 111111223567888999999999864
No 35
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.5e-19 Score=195.66 Aligned_cols=183 Identities=28% Similarity=0.399 Sum_probs=138.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|.+ |-|.+....+|.+.+.- +.++.....+| ..++++|||+||||||||+||++||+++
T Consensus 188 ~f~d-iGG~d~~~~el~~li~~----i~~Pe~~~~lG---------------v~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 188 SFSD-IGGLDKTLAELCELIIH----IKHPEVFSSLG---------------VRPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred chhh-ccChHHHHHHHHHHHHH----hcCchhHhhcC---------------CCCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 4444 79999999999888851 22222211112 2346999999999999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
++||+.+++.+++ +|+.|++ ++.++++|+++..+ .+||+||||||.+.++|+.. +....++++.+||..||
T Consensus 248 ~vPf~~isApeiv-SGvSGES-EkkiRelF~~A~~~----aPcivFiDeIDAI~pkRe~a---qreMErRiVaQLlt~mD 318 (802)
T KOG0733|consen 248 GVPFLSISAPEIV-SGVSGES-EKKIRELFDQAKSN----APCIVFIDEIDAITPKREEA---QREMERRIVAQLLTSMD 318 (802)
T ss_pred CCceEeecchhhh-cccCccc-HHHHHHHHHHHhcc----CCeEEEeecccccccchhhH---HHHHHHHHHHHHHHhhh
Confidence 9999999999999 7899999 78899999999876 89999999999999998753 23333569999999999
Q ss_pred ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcc
Q 007362 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (606)
Q Consensus 430 g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~ 509 (606)
+-... ..++..+++|.++|-.|
T Consensus 319 ~l~~~---------------~~~g~~VlVIgATnRPD------------------------------------------- 340 (802)
T KOG0733|consen 319 ELSNE---------------KTKGDPVLVIGATNRPD------------------------------------------- 340 (802)
T ss_pred ccccc---------------ccCCCCeEEEecCCCCc-------------------------------------------
Confidence 62211 01234466777666432
Q ss_pred hhhhhccCcccc--cccCCeEEEcCCcCHHHHHHHHhh
Q 007362 510 SDLIAYGLIPEF--VGRFPILVSLTALTEDQLVKVLTE 545 (606)
Q Consensus 510 ~~l~~~~l~PeL--l~R~d~iI~f~~Ls~eel~~Il~~ 545 (606)
.+.|.| .+|||.-|.+.-.++.+..+|++.
T Consensus 341 ------slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~ 372 (802)
T KOG0733|consen 341 ------SLDPALRRAGRFDREICLGVPSETAREEILRI 372 (802)
T ss_pred ------ccCHHHhccccccceeeecCCchHHHHHHHHH
Confidence 133333 378999999998999888888875
No 36
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=7.3e-19 Score=194.66 Aligned_cols=216 Identities=21% Similarity=0.292 Sum_probs=152.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|.|++.+|+.|.+.... |.. .....| ...+.+|||+||||||||++|+++|+.++.+|+
T Consensus 230 vgGl~~lK~~l~~~~~~-~~~---~~~~~g-----------------l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~ 288 (489)
T CHL00195 230 IGGLDNLKDWLKKRSTS-FSK---QASNYG-----------------LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLL 288 (489)
T ss_pred hcCHHHHHHHHHHHHHH-hhH---HHHhcC-----------------CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 89999999988764421 111 000001 123589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.+++..+. .+|+|++ +..++++|..+... .++||||||||++...+..... ......++..|+..|++
T Consensus 289 ~l~~~~l~-~~~vGes-e~~l~~~f~~A~~~----~P~IL~IDEID~~~~~~~~~~d--~~~~~rvl~~lL~~l~~---- 356 (489)
T CHL00195 289 RLDVGKLF-GGIVGES-ESRMRQMIRIAEAL----SPCILWIDEIDKAFSNSESKGD--SGTTNRVLATFITWLSE---- 356 (489)
T ss_pred EEEhHHhc-ccccChH-HHHHHHHHHHHHhc----CCcEEEehhhhhhhccccCCCC--chHHHHHHHHHHHHHhc----
Confidence 99999887 5699988 67888998876554 7899999999998765332211 11224577888888863
Q ss_pred cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~ 514 (606)
...++++|+|+|..+
T Consensus 357 -----------------~~~~V~vIaTTN~~~------------------------------------------------ 371 (489)
T CHL00195 357 -----------------KKSPVFVVATANNID------------------------------------------------ 371 (489)
T ss_pred -----------------CCCceEEEEecCChh------------------------------------------------
Confidence 123466677776421
Q ss_pred ccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHH
Q 007362 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (606)
Q Consensus 515 ~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~ 592 (606)
.++|+++. |||.++.++.++.++..+|++..+... .. ...++..++.|++. ..+|...+|+++
T Consensus 372 -~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~-----------~~-~~~~~~dl~~La~~--T~GfSGAdI~~l 436 (489)
T CHL00195 372 -LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKF-----------RP-KSWKKYDIKKLSKL--SNKFSGAEIEQS 436 (489)
T ss_pred -hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhc-----------CC-CcccccCHHHHHhh--cCCCCHHHHHHH
Confidence 26677764 999999999999999999998643221 10 01223446777776 567777889888
Q ss_pred HHHHHHHHHHh
Q 007362 593 LESILTEAMYE 603 (606)
Q Consensus 593 Ie~~l~~al~~ 603 (606)
+.+....++.+
T Consensus 437 v~eA~~~A~~~ 447 (489)
T CHL00195 437 IIEAMYIAFYE 447 (489)
T ss_pred HHHHHHHHHHc
Confidence 88777766643
No 37
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.80 E-value=1.8e-18 Score=192.96 Aligned_cols=183 Identities=27% Similarity=0.341 Sum_probs=132.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ |+|++++|+.|.+.+.. ++ +.......| ...+.++||+||||||||++|++||+.+
T Consensus 53 ~~~d-i~g~~~~k~~l~~~~~~-l~---~~~~~~~~g---------------~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 53 TFKD-VAGIDEAKEELMEIVDF-LK---NPSKFTKLG---------------AKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred CHHH-hCCHHHHHHHHHHHHHH-HH---CHHHHHhcC---------------CCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 3554 79999999999887751 11 111100000 1224789999999999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+.+|+.++++++.+ .++|.. ...++.+|..+... .++||||||||.+..++.....+.+.....+++.||..||
T Consensus 113 ~~~~~~i~~~~~~~-~~~g~~-~~~l~~~f~~a~~~----~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d 186 (495)
T TIGR01241 113 GVPFFSISGSDFVE-MFVGVG-ASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD 186 (495)
T ss_pred CCCeeeccHHHHHH-HHhccc-HHHHHHHHHHHHhc----CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhc
Confidence 99999999998874 467776 56788888877544 7899999999999887654322334444568888999988
Q ss_pred ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcc
Q 007362 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (606)
Q Consensus 430 g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~ 509 (606)
+.. ...++++|+++|..+
T Consensus 187 ~~~-------------------~~~~v~vI~aTn~~~------------------------------------------- 204 (495)
T TIGR01241 187 GFG-------------------TNTGVIVIAATNRPD------------------------------------------- 204 (495)
T ss_pred ccc-------------------CCCCeEEEEecCChh-------------------------------------------
Confidence 521 223466777776431
Q ss_pred hhhhhccCccccc--ccCCeEEEcCCcCHHHHHHHHhhh
Q 007362 510 SDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEP 546 (606)
Q Consensus 510 ~~l~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~ 546 (606)
.++|.++ +|||..|.++.++.++..+|+...
T Consensus 205 ------~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~ 237 (495)
T TIGR01241 205 ------VLDPALLRPGRFDRQVVVDLPDIKGREEILKVH 237 (495)
T ss_pred ------hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHH
Confidence 1455555 489999999999999999988754
No 38
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.7e-19 Score=196.84 Aligned_cols=135 Identities=29% Similarity=0.409 Sum_probs=112.9
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+.+ |.|.|+||+.|.+.|. | +..+.+.. .--+..|.++||+||||||||+|||++|.+.+
T Consensus 149 F~D-VAG~dEakeel~EiVd--f--Lk~p~ky~---------------~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~ 208 (596)
T COG0465 149 FAD-VAGVDEAKEELSELVD--F--LKNPKKYQ---------------ALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG 208 (596)
T ss_pred hhh-hcCcHHHHHHHHHHHH--H--HhCchhhH---------------hcccccccceeEecCCCCCcHHHHHHHhcccC
Confidence 444 8999999999999985 1 11111111 11123468999999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
+||+.++.+++.+. |+|.. .+.++++|.++..+ .+|||||||||++...|....+++++.++.++|+||..|||
T Consensus 209 VPFf~iSGS~FVem-fVGvG-AsRVRdLF~qAkk~----aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG 282 (596)
T COG0465 209 VPFFSISGSDFVEM-FVGVG-ASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 282 (596)
T ss_pred CCceeccchhhhhh-hcCCC-cHHHHHHHHHhhcc----CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc
Confidence 99999999999965 89998 78899999999876 78999999999999998777778888899999999999997
Q ss_pred e
Q 007362 431 T 431 (606)
Q Consensus 431 ~ 431 (606)
+
T Consensus 283 F 283 (596)
T COG0465 283 F 283 (596)
T ss_pred C
Confidence 4
No 39
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.79 E-value=3.6e-19 Score=194.10 Aligned_cols=220 Identities=20% Similarity=0.336 Sum_probs=161.8
Q ss_pred CCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhh----hhhcCCcccchHHHHHH
Q 007362 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT----LTQAGYVGEDVESILYK 377 (606)
Q Consensus 305 ~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~----l~~sg~vG~~~~~~l~~ 377 (606)
.|.|+.|.......+.++.....|||.|++||||.++|++|++.. +.||+.+||.. +.++.++|+.. +.++-
T Consensus 248 ig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~-GAFTG 326 (560)
T COG3829 248 IGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEK-GAFTG 326 (560)
T ss_pred ccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCC-ccccc
Confidence 467788888888888888899999999999999999999999987 67999999995 44555566652 22222
Q ss_pred HHHh-hhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee-ecCCCCcccCCCCCcEEEecCc
Q 007362 378 LLAQ-AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV-NVPEKGARKHPRGDSIQMDTKD 455 (606)
Q Consensus 378 lf~~-a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~-~i~~~g~~~~~~~~~v~idt~n 455 (606)
.... .++.++.|+++.||||||..|+.. .|..||++|+++.+ .+.+. ..+.+|.+
T Consensus 327 A~~~GK~GlfE~A~gGTLFLDEIgempl~--------------LQaKLLRVLQEkei~rvG~t--------~~~~vDVR- 383 (560)
T COG3829 327 ASKGGKPGLFELANGGTLFLDEIGEMPLP--------------LQAKLLRVLQEKEIERVGGT--------KPIPVDVR- 383 (560)
T ss_pred cccCCCCcceeeccCCeEEehhhccCCHH--------------HHHHHHHHHhhceEEecCCC--------CceeeEEE-
Confidence 2222 456677889999999999999998 99999999985544 33222 22334433
Q ss_pred eeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcC
Q 007362 456 ILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT 535 (606)
Q Consensus 456 ii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls 535 (606)
+|.++ ..+++++|.+++|+.+++|..++... ..|+|..|-
T Consensus 384 --IIAAT-N~nL~~~i~~G~FReDLYYRLNV~~i---------------------------~iPPLReR~---------- 423 (560)
T COG3829 384 --IIAAT-NRNLEKMIAEGTFREDLYYRLNVIPI---------------------------TIPPLRERK---------- 423 (560)
T ss_pred --EEecc-CcCHHHHHhcCcchhhheeeeceeee---------------------------cCCCcccCc----------
Confidence 45444 46899999998888777776555432 334444443
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCcccc-cCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 536 EDQLVKVLTEPKNALGKQYKRLFSMNNVKLH-FTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 536 ~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~-i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
+|+..++..++..+.+++ +..+. ++++++..|.++.|++|. |+|.++||+++.
T Consensus 424 -eDI~~L~~~Fl~k~s~~~-------~~~v~~ls~~a~~~L~~y~WPGNV--RELeNviER~v~ 477 (560)
T COG3829 424 -EDIPLLAEYFLDKFSRRY-------GRNVKGLSPDALALLLRYDWPGNV--RELENVIERAVN 477 (560)
T ss_pred -chHHHHHHHHHHHHHHHc-------CCCcccCCHHHHHHHHhCCCCchH--HHHHHHHHHHHh
Confidence 777777776544444433 33344 999999999999999988 999999999874
No 40
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.8e-18 Score=190.07 Aligned_cols=221 Identities=25% Similarity=0.311 Sum_probs=160.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
+.|++.+|+.+.+++...+++...... ....++.++||+||||||||++|+++|..++.+|+
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~------------------~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi 305 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRK------------------LGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFI 305 (494)
T ss_pred hhcHHHHHHHHHHHHHhHhhChHHHHh------------------cCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEE
Confidence 788999999999999755544221100 00112468999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.++..++. ++|+|+. ++.++.+|..+... .++||||||+|++...|..... .+...++++||..|+|-.
T Consensus 306 ~v~~~~l~-sk~vGes-ek~ir~~F~~A~~~----~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e-- 374 (494)
T COG0464 306 SVKGSELL-SKWVGES-EKNIRELFEKARKL----APSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIE-- 374 (494)
T ss_pred EeeCHHHh-ccccchH-HHHHHHHHHHHHcC----CCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCC--
Confidence 99999887 6799999 88999999999854 8999999999999988654322 222569999999998521
Q ss_pred cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~ 514 (606)
...++++|.++|..+
T Consensus 375 -----------------~~~~v~vi~aTN~p~------------------------------------------------ 389 (494)
T COG0464 375 -----------------KAEGVLVIAATNRPD------------------------------------------------ 389 (494)
T ss_pred -----------------ccCceEEEecCCCcc------------------------------------------------
Confidence 234455666666432
Q ss_pred ccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHH
Q 007362 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (606)
Q Consensus 515 ~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~ 592 (606)
.++|+++. |||.++.++..+.++..+|+...+... +.. ..++-.++.|++. ..++...+|..+
T Consensus 390 -~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~-----------~~~-~~~~~~~~~l~~~--t~~~sgadi~~i 454 (494)
T COG0464 390 -DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK-----------KPP-LAEDVDLEELAEI--TEGYSGADIAAL 454 (494)
T ss_pred -ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc-----------CCc-chhhhhHHHHHHH--hcCCCHHHHHHH
Confidence 25566666 999999999999999999988642211 110 1233445555553 344666688888
Q ss_pred HHHHHHHHHHhc
Q 007362 593 LESILTEAMYEV 604 (606)
Q Consensus 593 Ie~~l~~al~~~ 604 (606)
++.....++-+.
T Consensus 455 ~~ea~~~~~~~~ 466 (494)
T COG0464 455 VREAALEALREA 466 (494)
T ss_pred HHHHHHHHHHHh
Confidence 888887777553
No 41
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.78 E-value=3.7e-18 Score=198.65 Aligned_cols=217 Identities=24% Similarity=0.365 Sum_probs=158.3
Q ss_pred cCCHHHHHHHHHHHHHHHHH--HHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 275 VIGQEKAKKVLSVAVYNHYK--RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~--rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
|.|++.+|+.|.+.+...++ .++.. .+ ..++.++||+||||||||++|+++|++++.+
T Consensus 455 i~g~~~~k~~l~~~v~~~~~~~~~~~~-----~g---------------~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 455 IGGLEEVKQELREAVEWPLKHPEIFEK-----MG---------------IRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred cccHHHHHHHHHHHHHhhhhCHHHHHh-----cC---------------CCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 89999999999998864322 11111 00 1124789999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~ 432 (606)
|+.+++.++. +.|+|++ +..++.+|..+... .++||||||||.+...+..... ....+.+.++||..|+|.
T Consensus 515 fi~v~~~~l~-~~~vGes-e~~i~~~f~~A~~~----~p~iifiDEid~l~~~r~~~~~--~~~~~~~~~~lL~~ldg~- 585 (733)
T TIGR01243 515 FIAVRGPEIL-SKWVGES-EKAIREIFRKARQA----APAIIFFDEIDAIAPARGARFD--TSVTDRIVNQLLTEMDGI- 585 (733)
T ss_pred EEEEehHHHh-hcccCcH-HHHHHHHHHHHHhc----CCEEEEEEChhhhhccCCCCCC--ccHHHHHHHHHHHHhhcc-
Confidence 9999999988 5699998 77889999888654 7899999999999887643211 112346889999999862
Q ss_pred eecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhh
Q 007362 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (606)
Q Consensus 433 ~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l 512 (606)
....++++|+|+|..+
T Consensus 586 ------------------~~~~~v~vI~aTn~~~---------------------------------------------- 601 (733)
T TIGR01243 586 ------------------QELSNVVVIAATNRPD---------------------------------------------- 601 (733)
T ss_pred ------------------cCCCCEEEEEeCCChh----------------------------------------------
Confidence 1235677888777432
Q ss_pred hhccCccccc--ccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHH
Q 007362 513 IAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (606)
Q Consensus 513 ~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~ 590 (606)
.++|.++ +|||.+|.|+.++.++..+|+.... ++..+. ++..++.|++. ..++...+|.
T Consensus 602 ---~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~-------------~~~~~~-~~~~l~~la~~--t~g~sgadi~ 662 (733)
T TIGR01243 602 ---ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHT-------------RSMPLA-EDVDLEELAEM--TEGYTGADIE 662 (733)
T ss_pred ---hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHh-------------cCCCCC-ccCCHHHHHHH--cCCCCHHHHH
Confidence 2566776 4999999999999999999986421 111211 11236667765 4567777888
Q ss_pred HHHHHHHHHHHHh
Q 007362 591 AILESILTEAMYE 603 (606)
Q Consensus 591 ~~Ie~~l~~al~~ 603 (606)
.++.+....++.+
T Consensus 663 ~~~~~A~~~a~~~ 675 (733)
T TIGR01243 663 AVCREAAMAALRE 675 (733)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877777653
No 42
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3.4e-18 Score=170.37 Aligned_cols=180 Identities=27% Similarity=0.455 Sum_probs=134.8
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
--+.|-|++..++.+.+.+..+.+ ++.+...+|- ..|.++|||||||||||+||+++|+...
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPvK---HPELF~aLGI---------------aQPKGvlLygppgtGktLlaraVahht~ 206 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPVK---HPELFEALGI---------------AQPKGVLLYGPPGTGKTLLARAVAHHTD 206 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhcccc---CHHHHHhcCC---------------CCCcceEEecCCCCchhHHHHHHHhhcc
Confidence 334588999999999998863322 1111111111 1148999999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH--
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML-- 428 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L-- 428 (606)
+.|++++.+++. .+|+|+. ..+++++|-.++.+ .++|||.||||.+...|-....+.+. ++|..+|++|
T Consensus 207 c~firvsgselv-qk~igeg-srmvrelfvmareh----apsiifmdeidsigs~r~e~~~ggds---evqrtmlellnq 277 (404)
T KOG0728|consen 207 CTFIRVSGSELV-QKYIGEG-SRMVRELFVMAREH----APSIIFMDEIDSIGSSRVESGSGGDS---EVQRTMLELLNQ 277 (404)
T ss_pred eEEEEechHHHH-HHHhhhh-HHHHHHHHHHHHhc----CCceEeeecccccccccccCCCCccH---HHHHHHHHHHHh
Confidence 999999999999 4699998 78999999999887 89999999999998887665544443 4676666665
Q ss_pred -hceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhh
Q 007362 429 -EGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (606)
Q Consensus 429 -eg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~ 507 (606)
||+. .++|+-+|+++|..|+
T Consensus 278 ldgfe-------------------atknikvimatnridi---------------------------------------- 298 (404)
T KOG0728|consen 278 LDGFE-------------------ATKNIKVIMATNRIDI---------------------------------------- 298 (404)
T ss_pred ccccc-------------------cccceEEEEecccccc----------------------------------------
Confidence 4432 3577878888775542
Q ss_pred cchhhhhccCccccc--ccCCeEEEcCCcCHHHHHHHHhh
Q 007362 508 ESSDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTE 545 (606)
Q Consensus 508 ~~~~l~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~ 545 (606)
++|.|+ +|||..|.|++.+++...+|++-
T Consensus 299 ---------ld~allrpgridrkiefp~p~e~ar~~ilki 329 (404)
T KOG0728|consen 299 ---------LDPALLRPGRIDRKIEFPPPNEEARLDILKI 329 (404)
T ss_pred ---------ccHhhcCCCcccccccCCCCCHHHHHHHHHH
Confidence 333333 68888899999999888888764
No 43
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=1e-18 Score=190.33 Aligned_cols=220 Identities=19% Similarity=0.309 Sum_probs=160.2
Q ss_pred CCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhh----hcCCcccchHHHHH
Q 007362 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT----QAGYVGEDVESILY 376 (606)
Q Consensus 304 g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~----~sg~vG~~~~~~l~ 376 (606)
-+|.|+.|+.+.+....++....+|||+|++||||.++|++|++.. +.||+.+||..+. ++.++|+. ...++
T Consensus 143 liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhe-kGAFT 221 (464)
T COG2204 143 LVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHE-KGAFT 221 (464)
T ss_pred ceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccc-ccCcC
Confidence 4589999999999999999999999999999999999999999988 4699999998654 33344443 22222
Q ss_pred HHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee-eecCCCCcccCCCCCcEEEecCc
Q 007362 377 KLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQMDTKD 455 (606)
Q Consensus 377 ~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~-~~i~~~g~~~~~~~~~v~idt~n 455 (606)
.......+.++.+++++||||||..++.. +|..||++|+.+. ..+.+ +..+.+|.+
T Consensus 222 GA~~~r~G~fE~A~GGTLfLDEI~~mpl~--------------~Q~kLLRvLqe~~~~rvG~--------~~~i~vdvR- 278 (464)
T COG2204 222 GAITRRIGRFEQANGGTLFLDEIGEMPLE--------------LQVKLLRVLQEREFERVGG--------NKPIKVDVR- 278 (464)
T ss_pred CcccccCcceeEcCCceEEeeccccCCHH--------------HHHHHHHHHHcCeeEecCC--------CcccceeeE-
Confidence 22223345677889999999999999988 9999999998443 33322 233444444
Q ss_pred eeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcC
Q 007362 456 ILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT 535 (606)
Q Consensus 456 ii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls 535 (606)
+|++ +..||++.+.+++|+.+++|..++. .|.+++|.
T Consensus 279 --iIaa-T~~dL~~~v~~G~FReDLyyRLnV~----------------------------------------~i~iPpLR 315 (464)
T COG2204 279 --IIAA-TNRDLEEEVAAGRFREDLYYRLNVV----------------------------------------PLRLPPLR 315 (464)
T ss_pred --EEee-cCcCHHHHHHcCCcHHHHHhhhccc----------------------------------------eecCCccc
Confidence 4544 4478999998888766655544432 34455555
Q ss_pred H--HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 536 E--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 536 ~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
+ +|+.-++..++..+ .+... .....+++++++.|..+.|.+|. |+|++++++.+.
T Consensus 316 ER~EDIp~L~~hfl~~~----~~~~~--~~~~~~s~~a~~~L~~y~WPGNV--REL~N~ver~~i 372 (464)
T COG2204 316 ERKEDIPLLAEHFLKRF----AAELG--RPPKGFSPEALAALLAYDWPGNV--RELENVVERAVI 372 (464)
T ss_pred ccchhHHHHHHHHHHHH----HHHcC--CCCCCCCHHHHHHHHhCCCChHH--HHHHHHHHHHHh
Confidence 4 77777777654444 33221 12345999999999999999988 999999998764
No 44
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.77 E-value=1.3e-17 Score=180.94 Aligned_cols=221 Identities=23% Similarity=0.300 Sum_probs=148.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|.|++.+|+.|.+++..++.. +......| ..++.++||+||||||||++|+++|+.++.+|+
T Consensus 147 igGl~~~k~~l~~~v~~pl~~---~~~~~~~G---------------l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi 208 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTC---PELYEQIG---------------IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI 208 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcC---HHHHHhcC---------------CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 899999999999998744332 11111111 113589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.+.++.+. ..|+|+. +..++.+|..+... .++||||||+|.+..++.....+.+.....+...|+..|++..
T Consensus 209 ~i~~s~l~-~k~~ge~-~~~lr~lf~~A~~~----~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~-- 280 (398)
T PTZ00454 209 RVVGSEFV-QKYLGEG-PRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFD-- 280 (398)
T ss_pred EEehHHHH-HHhcchh-HHHHHHHHHHHHhc----CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccC--
Confidence 99998877 4588877 56788888776544 7899999999999876543322222222234455566665411
Q ss_pred cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~ 514 (606)
...++++|+++|..+
T Consensus 281 -----------------~~~~v~VI~aTN~~d------------------------------------------------ 295 (398)
T PTZ00454 281 -----------------QTTNVKVIMATNRAD------------------------------------------------ 295 (398)
T ss_pred -----------------CCCCEEEEEecCCch------------------------------------------------
Confidence 123566777776421
Q ss_pred ccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHH
Q 007362 515 YGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAI 592 (606)
Q Consensus 515 ~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~ 592 (606)
.++|.++. |||..|.|+.++.++...|+...+. ..+....+ .+..|+.. ..++...+|+.+
T Consensus 296 -~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~-----------~~~l~~dv---d~~~la~~--t~g~sgaDI~~l 358 (398)
T PTZ00454 296 -TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS-----------KMNLSEEV---DLEDFVSR--PEKISAADIAAI 358 (398)
T ss_pred -hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh-----------cCCCCccc---CHHHHHHH--cCCCCHHHHHHH
Confidence 25566664 9999999999999998888874311 11111111 24455554 456667788888
Q ss_pred HHHHHHHHHHh
Q 007362 593 LESILTEAMYE 603 (606)
Q Consensus 593 Ie~~l~~al~~ 603 (606)
+.+....++.+
T Consensus 359 ~~eA~~~A~r~ 369 (398)
T PTZ00454 359 CQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHc
Confidence 88777766654
No 45
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=1.3e-18 Score=187.45 Aligned_cols=220 Identities=22% Similarity=0.361 Sum_probs=170.1
Q ss_pred CCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhh----hhcCCcccchHHHHHH
Q 007362 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL----TQAGYVGEDVESILYK 377 (606)
Q Consensus 305 ~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l----~~sg~vG~~~~~~l~~ 377 (606)
.|.|+.|..+++..+.|+.+...|||.|++||||..+||+|++.. ..||+.+||..+ .++.++|+. .+.++.
T Consensus 226 IG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHe-KGAFTG 304 (550)
T COG3604 226 IGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHE-KGAFTG 304 (550)
T ss_pred eecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccc-cccccc
Confidence 388899999999999999999999999999999999999999988 579999999954 455667776 555666
Q ss_pred HHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCce
Q 007362 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDI 456 (606)
Q Consensus 378 lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~ni 456 (606)
.+....+.++.+.++.||||||..++.. +|..||.+|+ |.+-.+. .++.+.+|.+
T Consensus 305 A~~~r~GrFElAdGGTLFLDEIGelPL~--------------lQaKLLRvLQegEieRvG--------~~r~ikVDVR-- 360 (550)
T COG3604 305 AINTRRGRFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQEGEIERVG--------GDRTIKVDVR-- 360 (550)
T ss_pred chhccCcceeecCCCeEechhhccCCHH--------------HHHHHHHHHhhcceeecC--------CCceeEEEEE--
Confidence 6677778888999999999999999998 9999999998 4333332 2345566655
Q ss_pred eeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCH
Q 007362 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE 536 (606)
Q Consensus 457 i~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~ 536 (606)
+|+++| .||++.+++++|+.+++|...+.- +.++||.+
T Consensus 361 -iIAATN-RDL~~~V~~G~FRaDLYyRLsV~P----------------------------------------l~lPPLRE 398 (550)
T COG3604 361 -VIAATN-RDLEEMVRDGEFRADLYYRLSVFP----------------------------------------LELPPLRE 398 (550)
T ss_pred -EEeccc-hhHHHHHHcCcchhhhhhcccccc----------------------------------------cCCCCccc
Confidence 444444 789999999988777666544322 33444443
Q ss_pred --HHHHHHHhhhHHHHHHHHHHHHhcCCc-ccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHH
Q 007362 537 --DQLVKVLTEPKNALGKQYKRLFSMNNV-KLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (606)
Q Consensus 537 --eel~~Il~~~l~~L~k~~~~~~~~~~i-~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~a 600 (606)
+|+.-++..+ .+++.+. .+. .+.++++|++.|.++.|.+|. |+|.++|++.+.-+
T Consensus 399 R~~DIplLA~~F----le~~~~~---~gr~~l~ls~~Al~~L~~y~wPGNV--RELen~veRavlla 456 (550)
T COG3604 399 RPEDIPLLAGYF----LEKFRRR---LGRAILSLSAEALELLSSYEWPGNV--RELENVVERAVLLA 456 (550)
T ss_pred CCccHHHHHHHH----HHHHHHh---cCCcccccCHHHHHHHHcCCCCCcH--HHHHHHHHHHHHHh
Confidence 5666666643 4444442 355 678999999999999999988 99999999988754
No 46
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.77 E-value=1.7e-17 Score=179.76 Aligned_cols=222 Identities=25% Similarity=0.351 Sum_probs=149.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
.|.|++++++.|.+.+...+.. +......| ..++.+|||+||||||||++|+++|+.++.+|
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~---~~~~~~~g---------------~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~ 193 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKK---PELFEEVG---------------IEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 193 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhC---HHHHHhcC---------------CCCCCceEEECCCCCChHHHHHHHHHHhCCCE
Confidence 3899999999999988643322 11111111 11247899999999999999999999999999
Q ss_pred eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee
Q 007362 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (606)
Q Consensus 354 i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~ 433 (606)
+.++++++. ..|+|+. +..++.+|..+... .++||||||+|.+...+.....+.. .+++..|++++....
T Consensus 194 i~v~~~~l~-~~~~g~~-~~~i~~~f~~a~~~----~p~IlfiDEiD~l~~~r~~~~~~~~---~~~~~~l~~lL~~ld- 263 (389)
T PRK03992 194 IRVVGSELV-QKFIGEG-ARLVRELFELAREK----APSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAEMD- 263 (389)
T ss_pred EEeehHHHh-Hhhccch-HHHHHHHHHHHHhc----CCeEEEEechhhhhcccccCCCCcc---HHHHHHHHHHHHhcc-
Confidence 999999987 4578877 67788888877654 7899999999999876543322222 235555555543100
Q ss_pred ecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhh
Q 007362 434 NVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLI 513 (606)
Q Consensus 434 ~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~ 513 (606)
. .-...++++|+|+|..+
T Consensus 264 ---~------------~~~~~~v~VI~aTn~~~----------------------------------------------- 281 (389)
T PRK03992 264 ---G------------FDPRGNVKIIAATNRID----------------------------------------------- 281 (389)
T ss_pred ---c------------cCCCCCEEEEEecCChh-----------------------------------------------
Confidence 0 00123566777776321
Q ss_pred hccCccccc--ccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHH
Q 007362 514 AYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRA 591 (606)
Q Consensus 514 ~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~ 591 (606)
.+.+.++ +|||..|.|+.++.++..+|+...+. +..+.- +..+..|++. ..++...+|+.
T Consensus 282 --~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~-------------~~~~~~-~~~~~~la~~--t~g~sgadl~~ 343 (389)
T PRK03992 282 --ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR-------------KMNLAD-DVDLEELAEL--TEGASGADLKA 343 (389)
T ss_pred --hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc-------------cCCCCC-cCCHHHHHHH--cCCCCHHHHHH
Confidence 1455666 49999999999999999999874311 111110 1225566665 45677788888
Q ss_pred HHHHHHHHHHHh
Q 007362 592 ILESILTEAMYE 603 (606)
Q Consensus 592 ~Ie~~l~~al~~ 603 (606)
++.+....++.+
T Consensus 344 l~~eA~~~a~~~ 355 (389)
T PRK03992 344 ICTEAGMFAIRD 355 (389)
T ss_pred HHHHHHHHHHHc
Confidence 888877776654
No 47
>CHL00176 ftsH cell division protein; Validated
Probab=99.77 E-value=1.4e-17 Score=189.82 Aligned_cols=221 Identities=24% Similarity=0.335 Sum_probs=151.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ |+|++++|+.|.+.+.. ++ ........| ...+.++||+||||||||++|+++|+.+
T Consensus 181 ~f~d-v~G~~~~k~~l~eiv~~-lk---~~~~~~~~g---------------~~~p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 181 TFRD-IAGIEEAKEEFEEVVSF-LK---KPERFTAVG---------------AKIPKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CHHh-ccChHHHHHHHHHHHHH-Hh---CHHHHhhcc---------------CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 89999999999887741 11 111101001 1234789999999999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+.+|+.++++++.. .++|.. ...++.+|..+... .++||||||||.+...+.....+.+...+.+++.||..||
T Consensus 241 ~~p~i~is~s~f~~-~~~g~~-~~~vr~lF~~A~~~----~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d 314 (638)
T CHL00176 241 EVPFFSISGSEFVE-MFVGVG-AARVRDLFKKAKEN----SPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD 314 (638)
T ss_pred CCCeeeccHHHHHH-Hhhhhh-HHHHHHHHHHHhcC----CCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc
Confidence 99999999998874 366665 45677888877644 7899999999999877654433344444567888888887
Q ss_pred ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcc
Q 007362 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (606)
Q Consensus 430 g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~ 509 (606)
+.. ...++++|+++|..+
T Consensus 315 g~~-------------------~~~~ViVIaaTN~~~------------------------------------------- 332 (638)
T CHL00176 315 GFK-------------------GNKGVIVIAATNRVD------------------------------------------- 332 (638)
T ss_pred ccc-------------------CCCCeeEEEecCchH-------------------------------------------
Confidence 521 223566777666421
Q ss_pred hhhhhccCccccc--ccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChH
Q 007362 510 SDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGAR 587 (606)
Q Consensus 510 ~~l~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR 587 (606)
.+.|.++ +|||..+.|..++.++..+|++..+.. . ...++..+..|++. ...+..+
T Consensus 333 ------~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-------------~-~~~~d~~l~~lA~~--t~G~sga 390 (638)
T CHL00176 333 ------ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-------------K-KLSPDVSLELIARR--TPGFSGA 390 (638)
T ss_pred ------hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-------------c-ccchhHHHHHHHhc--CCCCCHH
Confidence 1334444 589999999999999999998764221 0 11234456677765 3456667
Q ss_pred HHHHHHHHHHHHH
Q 007362 588 GLRAILESILTEA 600 (606)
Q Consensus 588 ~L~~~Ie~~l~~a 600 (606)
+|++++.+....+
T Consensus 391 DL~~lvneAal~a 403 (638)
T CHL00176 391 DLANLLNEAAILT 403 (638)
T ss_pred HHHHHHHHHHHHH
Confidence 8888887665443
No 48
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.76 E-value=1.4e-17 Score=184.73 Aligned_cols=188 Identities=23% Similarity=0.319 Sum_probs=133.2
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ |.|++..++.|.++|...+.+ .......| ..++.++|||||||||||++|+++|+.+
T Consensus 180 ~~~d-IgGl~~~i~~i~~~v~lp~~~---~~l~~~~g---------------l~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 180 TYAD-IGGLDSQIEQIRDAVELPFLH---PELYREYD---------------LKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CHHH-cCChHHHHHHHHHHHHHHhhC---HHHHHhcc---------------CCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 3444 899999999999998744332 11100000 1124789999999999999999999998
Q ss_pred CCc----------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhH
Q 007362 350 NVP----------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEG 419 (606)
Q Consensus 350 ~~~----------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~ 419 (606)
+.+ |+.+...++. ..|+|+. +..++.+|+.+........++||||||+|.+...|.... +.+. ...
T Consensus 241 ~~~i~~~~~~~~~fl~v~~~eLl-~kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~-e~~ 316 (512)
T TIGR03689 241 AQRIGAETGDKSYFLNIKGPELL-NKYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDV-ETT 316 (512)
T ss_pred ccccccccCCceeEEeccchhhc-ccccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchH-HHH
Confidence 644 5566666666 4588887 677888888876554445789999999999987754321 1111 235
Q ss_pred HHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHh
Q 007362 420 VQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAV 499 (606)
Q Consensus 420 vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~ 499 (606)
+.++||..|+|.. ...++++|+++|..+
T Consensus 317 il~~LL~~LDgl~-------------------~~~~ViVI~ATN~~d--------------------------------- 344 (512)
T TIGR03689 317 VVPQLLSELDGVE-------------------SLDNVIVIGASNRED--------------------------------- 344 (512)
T ss_pred HHHHHHHHhcccc-------------------cCCceEEEeccCChh---------------------------------
Confidence 7789999998621 234677787777431
Q ss_pred HHHHHhhhcchhhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHH
Q 007362 500 TSSLLESVESSDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKN 548 (606)
Q Consensus 500 ~~~ll~~~~~~~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~ 548 (606)
.++|.+++ |||..|.|+.++.++..+|+..++.
T Consensus 345 ----------------~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 345 ----------------MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ----------------hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 26777776 9999999999999999999887653
No 49
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=2.1e-17 Score=167.81 Aligned_cols=190 Identities=29% Similarity=0.453 Sum_probs=142.4
Q ss_pred HhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 269 ~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
+.|++ .+||+++|+.|...+... +.++ -..-|+||+||||.||||||..+|++
T Consensus 23 ~~l~e-fiGQ~~vk~~L~ifI~AA--------k~r~------------------e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 23 KTLDE-FIGQEKVKEQLQIFIKAA--------KKRG------------------EALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred ccHHH-hcChHHHHHHHHHHHHHH--------HhcC------------------CCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 34556 499999999998888532 1111 11379999999999999999999999
Q ss_pred hCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH
Q 007362 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (606)
Q Consensus 349 l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L 428 (606)
++..+-..++-.+...+ .+-.++.... .+-||||||||++.+. +-..|...|
T Consensus 76 mgvn~k~tsGp~leK~g--------DlaaiLt~Le------~~DVLFIDEIHrl~~~--------------vEE~LYpaM 127 (332)
T COG2255 76 LGVNLKITSGPALEKPG--------DLAAILTNLE------EGDVLFIDEIHRLSPA--------------VEEVLYPAM 127 (332)
T ss_pred hcCCeEecccccccChh--------hHHHHHhcCC------cCCeEEEehhhhcChh--------------HHHHhhhhh
Confidence 99988877776665431 1222332222 4579999999999998 888999999
Q ss_pred hceeeecC-CCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhh
Q 007362 429 EGTIVNVP-EKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESV 507 (606)
Q Consensus 429 eg~~~~i~-~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~ 507 (606)
|++.+.|. ++| ...+.+.++...+.+|.+++-..
T Consensus 128 EDf~lDI~IG~g----p~Arsv~ldLppFTLIGATTr~G----------------------------------------- 162 (332)
T COG2255 128 EDFRLDIIIGKG----PAARSIRLDLPPFTLIGATTRAG----------------------------------------- 162 (332)
T ss_pred hheeEEEEEccC----CccceEeccCCCeeEeeeccccc-----------------------------------------
Confidence 99887754 222 34466778888888887655211
Q ss_pred cchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHcc
Q 007362 508 ESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (606)
Q Consensus 508 ~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a 579 (606)
.+..+|.+||..+..+.-|+.+|+.+|+.+.- .-.++.+++++...|++.+
T Consensus 163 --------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a-------------~~l~i~i~~~~a~eIA~rS 213 (332)
T COG2255 163 --------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSA-------------KILGIEIDEEAALEIARRS 213 (332)
T ss_pred --------cccchhHHhcCCeeeeecCCHHHHHHHHHHHH-------------HHhCCCCChHHHHHHHHhc
Confidence 26779999999999999999999999998641 1234669999999999874
No 50
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-17 Score=183.44 Aligned_cols=216 Identities=27% Similarity=0.394 Sum_probs=150.5
Q ss_pred cCCHHHHHHHHHHHHH--HHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 275 VIGQEKAKKVLSVAVY--NHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 275 VvGqe~ak~~L~~av~--~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
|.|+.++|+.|.+.+. ..|..++....- +-+.+||||||||||||+||.++|...+..
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~pl--------------------r~~~giLLyGppGcGKT~la~a~a~~~~~~ 728 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPL--------------------RLRTGILLYGPPGCGKTLLASAIASNSNLR 728 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCc--------------------ccccceEEECCCCCcHHHHHHHHHhhCCee
Confidence 8899999999999987 334445433211 124789999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI 432 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~ 432 (606)
|+.+.+-++. ++|+|.+ +..++.+|..+.. +++|||||||+|.+.++|.- ++..+. .++.|+||..|||..
T Consensus 729 fisvKGPElL-~KyIGaS-Eq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGh--DsTGVT-DRVVNQlLTelDG~E 799 (952)
T KOG0735|consen 729 FISVKGPELL-SKYIGAS-EQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGH--DSTGVT-DRVVNQLLTELDGAE 799 (952)
T ss_pred EEEecCHHHH-HHHhccc-HHHHHHHHHHhhc----cCCeEEEeccccccCcccCC--CCCCch-HHHHHHHHHhhcccc
Confidence 9999999999 5799999 7889999998865 49999999999999998642 223333 359999999999732
Q ss_pred eecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhh
Q 007362 433 VNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDL 512 (606)
Q Consensus 433 ~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l 512 (606)
. .+.+.++.++...||
T Consensus 800 g-------------------l~GV~i~aaTsRpdl--------------------------------------------- 815 (952)
T KOG0735|consen 800 G-------------------LDGVYILAATSRPDL--------------------------------------------- 815 (952)
T ss_pred c-------------------cceEEEEEecCCccc---------------------------------------------
Confidence 1 122222222222211
Q ss_pred hhccCccccc--ccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHH
Q 007362 513 IAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLR 590 (606)
Q Consensus 513 ~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~ 590 (606)
++|+|+ +|+|..+.-+..++.+..+|+... ... ...-++..++.|+.+ +.+|..-+|.
T Consensus 816 ----iDpALLRpGRlD~~v~C~~P~~~eRl~il~~l----s~s----------~~~~~~vdl~~~a~~--T~g~tgADlq 875 (952)
T KOG0735|consen 816 ----IDPALLRPGRLDKLVYCPLPDEPERLEILQVL----SNS----------LLKDTDVDLECLAQK--TDGFTGADLQ 875 (952)
T ss_pred ----cCHhhcCCCccceeeeCCCCCcHHHHHHHHHH----hhc----------cCCccccchHHHhhh--cCCCchhhHH
Confidence 334443 688888887777888877777642 111 112234456777766 3444444777
Q ss_pred HHHHHHHHHHHHh
Q 007362 591 AILESILTEAMYE 603 (606)
Q Consensus 591 ~~Ie~~l~~al~~ 603 (606)
.++.+.-+.++.+
T Consensus 876 ~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 876 SLLYNAQLAAVHE 888 (952)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666665543
No 51
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.75 E-value=8.9e-18 Score=178.17 Aligned_cols=199 Identities=21% Similarity=0.320 Sum_probs=138.8
Q ss_pred ccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHh-----------h
Q 007362 317 NDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ-----------A 382 (606)
Q Consensus 317 ~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~-----------a 382 (606)
....++....+|||+|++||||+++|++|+... +.||+.++|..+.+. ..-..+|.. .
T Consensus 14 ~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~--------~l~~~lfG~~~g~~~ga~~~~ 85 (329)
T TIGR02974 14 QVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN--------LLDSELFGHEAGAFTGAQKRH 85 (329)
T ss_pred HHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH--------HHHHHHhccccccccCccccc
Confidence 333444455889999999999999999999877 469999999865421 111122221 1
Q ss_pred hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee-ecCCCCcccCCCCCcEEEecCceeeecc
Q 007362 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV-NVPEKGARKHPRGDSIQMDTKDILFICG 461 (606)
Q Consensus 383 ~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~-~i~~~g~~~~~~~~~v~idt~nii~I~t 461 (606)
.+.+..+.+++||||||+.|... +|..|+.+|+...+ .+... ..-..++.+|++
T Consensus 86 ~G~~~~a~gGtL~Ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~-----------~~~~~~~RiI~a 140 (329)
T TIGR02974 86 QGRFERADGGTLFLDELATASLL--------------VQEKLLRVIEYGEFERVGGS-----------QTLQVDVRLVCA 140 (329)
T ss_pred CCchhhCCCCEEEeCChHhCCHH--------------HHHHHHHHHHcCcEEecCCC-----------ceeccceEEEEe
Confidence 23356678899999999999988 99999999984332 22111 011234556666
Q ss_pred CCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcCCcCH--HH
Q 007362 462 GAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTE--DQ 538 (606)
Q Consensus 462 gn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls~--ee 538 (606)
++ .++++.+.+ ..|.++|+.||.. .|.+++|.+ +|
T Consensus 141 t~-~~l~~~~~~-----------------------------------------g~fr~dL~~rl~~~~i~lPpLReR~eD 178 (329)
T TIGR02974 141 TN-ADLPALAAE-----------------------------------------GRFRADLLDRLAFDVITLPPLRERQED 178 (329)
T ss_pred ch-hhHHHHhhc-----------------------------------------CchHHHHHHHhcchhcCCCchhhhhhh
Confidence 54 234333332 2367788888865 788999984 88
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCCcc--cccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 007362 539 LVKVLTEPKNALGKQYKRLFSMNNVK--LHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 539 l~~Il~~~l~~L~k~~~~~~~~~~i~--l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
+..++..++..+.+++ +.. ..+++++++.|..+.|.+|+ |+|+++|++.+..
T Consensus 179 I~~L~~~fl~~~~~~~-------~~~~~~~ls~~a~~~L~~y~WPGNv--rEL~n~i~~~~~~ 232 (329)
T TIGR02974 179 IMLLAEHFAIRMAREL-------GLPLFPGFTPQAREQLLEYHWPGNV--RELKNVVERSVYR 232 (329)
T ss_pred HHHHHHHHHHHHHHHh-------CCCCCCCcCHHHHHHHHhCCCCchH--HHHHHHHHHHHHh
Confidence 8888877655443332 333 46999999999999999988 9999999998864
No 52
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=2.3e-17 Score=164.63 Aligned_cols=167 Identities=29% Similarity=0.442 Sum_probs=120.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|-|++-.|+++.++|..++.. ..+.+..| -.+++++|||||||||||+||+++|+.....|+
T Consensus 157 iggld~qkqeireavelplt~---~~ly~qig---------------idpprgvllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTH---ADLYKQIG---------------IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred cccchhhHHHHHHHHhccchH---HHHHHHhC---------------CCCCcceEEeCCCCCcHHHHHHHHhhccchhee
Confidence 889999999999999733221 11111111 124589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHH---Hhce
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKM---LEGT 431 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~---Leg~ 431 (606)
++..+++. .+|.|+. ..+++.+|..++.+ .++||||||||.+..+|=....+.+ +++|..|+++ |||+
T Consensus 219 rvvgsefv-qkylgeg-prmvrdvfrlaken----apsiifideidaiatkrfdaqtgad---revqril~ellnqmdgf 289 (408)
T KOG0727|consen 219 RVVGSEFV-QKYLGEG-PRMVRDVFRLAKEN----APSIIFIDEIDAIATKRFDAQTGAD---REVQRILIELLNQMDGF 289 (408)
T ss_pred eeccHHHH-HHHhccC-cHHHHHHHHHHhcc----CCcEEEeehhhhHhhhhcccccccc---HHHHHHHHHHHHhccCc
Confidence 99999999 4699999 68999999988876 8999999999999888766555554 4466666555 4552
Q ss_pred eeecCCCCcccCCCCCcEEEecCceeeeccCCCcC-hH-HHHHhhhcccCCCcCcccc
Q 007362 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-LE-KTISERRQDSSIGFGAPVR 487 (606)
Q Consensus 432 ~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~-l~-~~i~~~~~~~~igf~~~~~ 487 (606)
- .++|+-+|+++|..| ++ .+++++|.+..|.|..+++
T Consensus 290 d-------------------q~~nvkvimatnradtldpallrpgrldrkiefplpdr 328 (408)
T KOG0727|consen 290 D-------------------QTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 328 (408)
T ss_pred C-------------------cccceEEEEecCcccccCHhhcCCccccccccCCCCch
Confidence 2 356777788777544 22 2334455555555544443
No 53
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.73 E-value=3.6e-17 Score=172.74 Aligned_cols=103 Identities=14% Similarity=0.249 Sum_probs=85.5
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhh-hhcCCCEEEEcccchh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNV-EAAQQGMVYIDEVDKI 402 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l-~~a~~~ILfIDEiD~l 402 (606)
.+..++||||||||||++|+++|++++.+|+.+++.++. ++|+|++ ++.++++|..+.... ....++||||||||++
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~-sk~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELE-SENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhh-cCcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 358999999999999999999999999999999999998 6799999 899999999887543 3457899999999999
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
...+.+ .+..+..+.+..+|+.+||+
T Consensus 225 ~g~r~~--~~~tv~~qiV~~tLLnl~D~ 250 (413)
T PLN00020 225 AGRFGT--TQYTVNNQMVNGTLMNIADN 250 (413)
T ss_pred CCCCCC--CCcchHHHHHHHHHHHHhcC
Confidence 887652 22333334456889999985
No 54
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.72 E-value=7.8e-17 Score=176.25 Aligned_cols=180 Identities=26% Similarity=0.373 Sum_probs=124.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|.|++..++.|.+++...+. +.......| ..++.++||+||||||||++|+++|+.++.+|+
T Consensus 185 IgGl~~qi~~l~e~v~lpl~---~p~~~~~~g---------------i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLT---HPELYDDIG---------------IKPPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhh---CHHHHHhcC---------------CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 79999999999999863322 111111101 112478999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
.+..+++.. .|+|+. ...++.+|..+... .++||||||||.+..++.....+....-..+...||..|++..
T Consensus 247 ~V~~seL~~-k~~Ge~-~~~vr~lF~~A~~~----~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~-- 318 (438)
T PTZ00361 247 RVVGSELIQ-KYLGDG-PKLVRELFRVAEEN----APSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD-- 318 (438)
T ss_pred EEecchhhh-hhcchH-HHHHHHHHHHHHhC----CCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc--
Confidence 999988874 578877 56788888777654 7899999999999876543322222221223344555555421
Q ss_pred cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhh
Q 007362 435 VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIA 514 (606)
Q Consensus 435 i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~ 514 (606)
...++.+|+++|..+
T Consensus 319 -----------------~~~~V~VI~ATNr~d------------------------------------------------ 333 (438)
T PTZ00361 319 -----------------SRGDVKVIMATNRIE------------------------------------------------ 333 (438)
T ss_pred -----------------ccCCeEEEEecCChH------------------------------------------------
Confidence 123566777666321
Q ss_pred ccCccccc--ccCCeEEEcCCcCHHHHHHHHhhh
Q 007362 515 YGLIPEFV--GRFPILVSLTALTEDQLVKVLTEP 546 (606)
Q Consensus 515 ~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~ 546 (606)
.++|.++ +|||..|.|+.++.++..+|+...
T Consensus 334 -~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~ 366 (438)
T PTZ00361 334 -SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIH 366 (438)
T ss_pred -HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHH
Confidence 1445555 589999999999999999998753
No 55
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=1.1e-16 Score=167.60 Aligned_cols=145 Identities=26% Similarity=0.430 Sum_probs=111.5
Q ss_pred CCChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHH
Q 007362 261 LPTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTL 340 (606)
Q Consensus 261 ~~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~ 340 (606)
...|.++...+++ |.|++.+|++|.+.|..+.++ +.... ......++.+|||+||||||||+
T Consensus 81 ~v~p~~I~v~f~D-IggLe~v~~~L~e~VilPlr~---pelF~--------------~g~Ll~p~kGiLL~GPpG~GKTm 142 (386)
T KOG0737|consen 81 VVPPSEIGVSFDD-IGGLEEVKDALQELVILPLRR---PELFA--------------KGKLLRPPKGILLYGPPGTGKTM 142 (386)
T ss_pred ccchhhceeehhh-ccchHHHHHHHHHHHhhcccc---hhhhc--------------ccccccCCccceecCCCCchHHH
Confidence 3467777777877 899999999999999744332 11110 11223356999999999999999
Q ss_pred HHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 341 LAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 341 lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
+|+++|++.+..|+.++++.+++ +|+|+. ++.++.+|..+... .|+||||||+|.+...|++ +.|..-.-.
T Consensus 143 lAKA~Akeaga~fInv~~s~lt~-KWfgE~-eKlv~AvFslAsKl----~P~iIFIDEvds~L~~R~s---~dHEa~a~m 213 (386)
T KOG0737|consen 143 LAKAIAKEAGANFINVSVSNLTS-KWFGEA-QKLVKAVFSLASKL----QPSIIFIDEVDSFLGQRRS---TDHEATAMM 213 (386)
T ss_pred HHHHHHHHcCCCcceeeccccch-hhHHHH-HHHHHHHHhhhhhc----CcceeehhhHHHHHhhccc---chHHHHHHH
Confidence 99999999999999999999995 799998 88999999888765 8999999999999887642 223222346
Q ss_pred HHHHHHHHhcee
Q 007362 421 QQALLKMLEGTI 432 (606)
Q Consensus 421 q~~LL~~Leg~~ 432 (606)
.++|....||..
T Consensus 214 K~eFM~~WDGl~ 225 (386)
T KOG0737|consen 214 KNEFMALWDGLS 225 (386)
T ss_pred HHHHHHHhcccc
Confidence 677777777633
No 56
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.70 E-value=1.5e-16 Score=165.63 Aligned_cols=176 Identities=23% Similarity=0.345 Sum_probs=125.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc---eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhh-hcCCCEEEEcccch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP---FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE-AAQQGMVYIDEVDK 401 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~---fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~-~a~~~ILfIDEiD~ 401 (606)
..++||||||||||+||+.|+.....+ |++++++.-. ...++.+|+.+..... ..+..||||||||+
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence 679999999999999999999888654 8888876532 3457777776654333 35678999999999
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCC
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~ig 481 (606)
+.+. +|+.||..+|. ..|++|.+++-+
T Consensus 234 FNks--------------QQD~fLP~VE~-----------------------G~I~lIGATTEN---------------- 260 (554)
T KOG2028|consen 234 FNKS--------------QQDTFLPHVEN-----------------------GDITLIGATTEN---------------- 260 (554)
T ss_pred hhhh--------------hhhcccceecc-----------------------CceEEEecccCC----------------
Confidence 9988 99999999872 234455444311
Q ss_pred cCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 007362 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMN 561 (606)
Q Consensus 482 f~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~ 561 (606)
-++.++.+|++|+ .++.+.+|..+++..|+.+.+..|.+.-+..-...
T Consensus 261 -------------------------------PSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~ 308 (554)
T KOG2028|consen 261 -------------------------------PSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLP 308 (554)
T ss_pred -------------------------------CccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCC
Confidence 2445777888888 47889999999999999987776664322111122
Q ss_pred CcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 562 NVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 562 ~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
+-...+++.++++|+... .-.||.--+.+|-.+.
T Consensus 309 n~s~~ve~siidyla~ls---dGDaR~aLN~Lems~~ 342 (554)
T KOG2028|consen 309 NSSMFVEDSIIDYLAYLS---DGDARAALNALEMSLS 342 (554)
T ss_pred CcchhhhHHHHHHHHHhc---CchHHHHHHHHHHHHH
Confidence 323468999999999763 2346666666665544
No 57
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.70 E-value=2.4e-16 Score=167.09 Aligned_cols=212 Identities=20% Similarity=0.335 Sum_probs=146.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CC
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NV 351 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~ 351 (606)
++|...+.+.+.+.+. .++....+|||+|++||||+++|++|+... +.
T Consensus 8 liG~S~~~~~~~~~i~-----------------------------~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~ 58 (326)
T PRK11608 8 LLGEANSFLEVLEQVS-----------------------------RLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQG 58 (326)
T ss_pred cEECCHHHHHHHHHHH-----------------------------HHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCC
Confidence 6777777777766664 222334789999999999999999999876 36
Q ss_pred ceeecchhhhhhcCCcccchHHHHHHHHHhh-----------hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 352 PFVIADATTLTQAGYVGEDVESILYKLLAQA-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 352 ~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a-----------~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
+|+.++|..+.+. ..-..+|... ...+..+.+++|||||||.|... +
T Consensus 59 pfv~v~c~~~~~~--------~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~--------------~ 116 (326)
T PRK11608 59 PFISLNCAALNEN--------LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPML--------------V 116 (326)
T ss_pred CeEEEeCCCCCHH--------HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHH--------------H
Confidence 9999999875421 1111222211 23355678899999999999988 9
Q ss_pred HHHHHHHHhceeee-cCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHh
Q 007362 421 QQALLKMLEGTIVN-VPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAV 499 (606)
Q Consensus 421 q~~LL~~Leg~~~~-i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~ 499 (606)
|..|+.+|+...+. .... . .+. .++.+|++++ .++++++.+
T Consensus 117 Q~~L~~~l~~~~~~~~g~~--------~--~~~-~~~RiI~~s~-~~l~~l~~~-------------------------- 158 (326)
T PRK11608 117 QEKLLRVIEYGELERVGGS--------Q--PLQ-VNVRLVCATN-ADLPAMVAE-------------------------- 158 (326)
T ss_pred HHHHHHHHhcCcEEeCCCC--------c--eee-ccEEEEEeCc-hhHHHHHHc--------------------------
Confidence 99999999843322 1110 0 111 2455666554 234433332
Q ss_pred HHHHHhhhcchhhhhccCcccccccCCe-EEEcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcc--cccCHHHHHH
Q 007362 500 TSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVK--LHFTEKALRV 574 (606)
Q Consensus 500 ~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~--l~i~e~al~~ 574 (606)
..|.++|+.||.. .|.+++|.+ +|+..++..++..+.+++ +.. ..+++++++.
T Consensus 159 ---------------g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-------~~~~~~~~s~~al~~ 216 (326)
T PRK11608 159 ---------------GKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCREL-------GLPLFPGFTERARET 216 (326)
T ss_pred ---------------CCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHh-------CCCCCCCCCHHHHHH
Confidence 2367788888854 789999986 788888876655443222 222 4699999999
Q ss_pred HHHccCCCCCChHHHHHHHHHHHHH
Q 007362 575 IAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 575 La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
|..+.|.+|+ |+|+++|++.+..
T Consensus 217 L~~y~WPGNv--rEL~~vl~~a~~~ 239 (326)
T PRK11608 217 LLNYRWPGNI--RELKNVVERSVYR 239 (326)
T ss_pred HHhCCCCcHH--HHHHHHHHHHHHh
Confidence 9999999988 9999999998863
No 58
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.70 E-value=3.8e-16 Score=167.75 Aligned_cols=219 Identities=28% Similarity=0.393 Sum_probs=144.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
.|.|++.+++.|.+++...... .......| ..++.++||+||||||||++|+++|+.++.+|
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~---~~~~~~~g---------------~~~p~gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKH---PELFEEVG---------------IEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcC---HHHHHhcC---------------CCCCceEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 4899999999999988633221 11111011 11247899999999999999999999999999
Q ss_pred eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH---hc
Q 007362 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML---EG 430 (606)
Q Consensus 354 i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L---eg 430 (606)
+.+.+..+.. .|+|.. ...++.+|..+... .++||||||+|.+...+.....+.+ .+++..|++++ ++
T Consensus 185 ~~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~----~p~il~iDEiD~l~~~~~~~~~~~~---~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 185 IRVVGSELVR-KYIGEG-ARLVREIFELAKEK----APSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLLAELDG 255 (364)
T ss_pred EecchHHHHH-HhhhHH-HHHHHHHHHHHHhc----CCcEEEhhhhhhhccccccCCCCcc---HHHHHHHHHHHHHhhC
Confidence 9999888763 467765 55677777765543 6789999999999776543222222 23455555554 32
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
. -...++.||+|+|..+
T Consensus 256 ~-------------------~~~~~v~vI~ttn~~~-------------------------------------------- 272 (364)
T TIGR01242 256 F-------------------DPRGNVKVIAATNRPD-------------------------------------------- 272 (364)
T ss_pred C-------------------CCCCCEEEEEecCChh--------------------------------------------
Confidence 1 0123566777776421
Q ss_pred hhhhccCccccc--ccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHH
Q 007362 511 DLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARG 588 (606)
Q Consensus 511 ~l~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~ 588 (606)
.+.+.++ +|||.+|.|+.++.++..+|+.... . +..+. ++..++.|++. ..++..++
T Consensus 273 -----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~--------~-----~~~l~-~~~~~~~la~~--t~g~sg~d 331 (364)
T TIGR01242 273 -----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT--------R-----KMKLA-EDVDLEAIAKM--TEGASGAD 331 (364)
T ss_pred -----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH--------h-----cCCCC-ccCCHHHHHHH--cCCCCHHH
Confidence 1445555 4899999999999999999987431 1 11111 01125566655 35677789
Q ss_pred HHHHHHHHHHHHHHh
Q 007362 589 LRAILESILTEAMYE 603 (606)
Q Consensus 589 L~~~Ie~~l~~al~~ 603 (606)
|+.++......++.+
T Consensus 332 l~~l~~~A~~~a~~~ 346 (364)
T TIGR01242 332 LKAICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHHHHHh
Confidence 998888887777654
No 59
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.6e-16 Score=159.21 Aligned_cols=128 Identities=27% Similarity=0.416 Sum_probs=98.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|-|++..+++|.+++..... +..+...+| -.+|.++|+|||||||||++||+.|...+..|+
T Consensus 173 iGGldkQIqELvEAiVLpmt---h~ekF~~lg---------------i~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL 234 (424)
T KOG0652|consen 173 IGGLDKQIQELVEAIVLPMT---HKEKFENLG---------------IRPPKGVLMYGPPGTGKTLMARACAAQTNATFL 234 (424)
T ss_pred cccHHHHHHHHHHHhccccc---cHHHHHhcC---------------CCCCCceEeeCCCCCcHHHHHHHHHHhccchHH
Confidence 89999999999999863211 111111111 123589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
.+-+-.+.+ .|+|.. .+.++..|..+... .++||||||+|.+..+|-..+-+.+ +++|..+|++|.
T Consensus 235 KLAgPQLVQ-MfIGdG-AkLVRDAFaLAKEk----aP~IIFIDElDAIGtKRfDSek~GD---REVQRTMLELLN 300 (424)
T KOG0652|consen 235 KLAGPQLVQ-MFIGDG-AKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKAGD---REVQRTMLELLN 300 (424)
T ss_pred HhcchHHHh-hhhcch-HHHHHHHHHHhhcc----CCeEEEEechhhhcccccccccccc---HHHHHHHHHHHH
Confidence 999999885 489988 78899999887765 7899999999999888655443333 567777777664
No 60
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.69 E-value=3.3e-16 Score=176.33 Aligned_cols=210 Identities=24% Similarity=0.368 Sum_probs=153.5
Q ss_pred CCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHh
Q 007362 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (606)
Q Consensus 305 ~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~ 381 (606)
.|.++.++.+.+..+.++....+|||+|++||||+++|++|++.. +.+|+.++|..+.+. ..-..+|..
T Consensus 199 iG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~--------~~~~~lfg~ 270 (534)
T TIGR01817 199 IGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET--------LLESELFGH 270 (534)
T ss_pred EECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH--------HHHHHHcCC
Confidence 488899999999999999999999999999999999999999986 569999999876421 111122221
Q ss_pred h-----------hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee-cCCCCcccCCCCCcE
Q 007362 382 A-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN-VPEKGARKHPRGDSI 449 (606)
Q Consensus 382 a-----------~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~-i~~~g~~~~~~~~~v 449 (606)
. .+.+..+.+++||||||+.|+.. +|..|+++|+...+. +... ..+
T Consensus 271 ~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~--------------~Q~~Ll~~l~~~~~~~~~~~--------~~~ 328 (534)
T TIGR01817 271 EKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA--------------FQAKLLRVLQEGEFERVGGN--------RTL 328 (534)
T ss_pred CCCccCCCCcCCCCcccccCCCeEEEechhhCCHH--------------HHHHHHHHHhcCcEEECCCC--------ceE
Confidence 1 22345567899999999999988 999999999843322 1110 111
Q ss_pred EEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-E
Q 007362 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-L 528 (606)
Q Consensus 450 ~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-i 528 (606)
. .++.+|++++ .++++.+.. ..|.++|+.|++. .
T Consensus 329 ~---~~~riI~~s~-~~l~~~~~~-----------------------------------------~~f~~~L~~rl~~~~ 363 (534)
T TIGR01817 329 K---VDVRLVAATN-RDLEEAVAK-----------------------------------------GEFRADLYYRINVVP 363 (534)
T ss_pred e---ecEEEEEeCC-CCHHHHHHc-----------------------------------------CCCCHHHHHHhcCCe
Confidence 1 2345666654 334443332 2377888999976 6
Q ss_pred EEcCCcC--HHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 529 VSLTALT--EDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 529 I~f~~Ls--~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
|.+++|. .+|+..|+..++..+.++ .+..+.+++++++.|..+.|.+|+ |+|+++|++.+.
T Consensus 364 i~lPpLreR~eDi~~L~~~~l~~~~~~-------~~~~~~~s~~a~~~L~~~~WPGNv--rEL~~v~~~a~~ 426 (534)
T TIGR01817 364 IFLPPLRERREDIPLLAEAFLEKFNRE-------NGRPLTITPSAIRVLMSCKWPGNV--RELENCLERTAT 426 (534)
T ss_pred eeCCCcccccccHHHHHHHHHHHHHHH-------cCCCCCCCHHHHHHHHhCCCCChH--HHHHHHHHHHHH
Confidence 8899998 488888888765544332 233367999999999999999988 999999998875
No 61
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=6.5e-16 Score=169.55 Aligned_cols=188 Identities=24% Similarity=0.295 Sum_probs=128.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... . .+..+||+||+|||||++|+++|+.+
T Consensus 16 ~f~d-vVGQe~iv~~L~~~i~~~--------r----------------------i~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 16 FFRD-VIHQDLAIGALQNALKSG--------K----------------------IGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred CHHH-HhChHHHHHHHHHHHHcC--------C----------------------CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444 899999999998887421 0 01348999999999999999999999
Q ss_pred CCc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++. |+.+++.. ..| ...++++.+............|+||||+|+++..
T Consensus 65 nce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas-----~~g---Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~ 136 (484)
T PRK14956 65 NCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS-----NRG---IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ 136 (484)
T ss_pred CcccccCccccCCCcHHHHHHccCCccceeechhh-----ccc---HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH
Confidence 753 22222211 011 1234444443332222345679999999999887
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.+++||+.||. ...+++||++++..
T Consensus 137 --------------A~NALLKtLEE---------------------Pp~~viFILaTte~-------------------- 161 (484)
T PRK14956 137 --------------SFNALLKTLEE---------------------PPAHIVFILATTEF-------------------- 161 (484)
T ss_pred --------------HHHHHHHHhhc---------------------CCCceEEEeecCCh--------------------
Confidence 99999999984 22456777766521
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+++|+ ..+.|.+++.+++.+.+... +...+ +
T Consensus 162 -----------------------------~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i-----------~~~Eg--i 198 (484)
T PRK14956 162 -----------------------------HKIPETILSRC-QDFIFKKVPLSVLQDYSEKL-----------CKIEN--V 198 (484)
T ss_pred -----------------------------hhccHHHHhhh-heeeecCCCHHHHHHHHHHH-----------HHHcC--C
Confidence 12667888888 47899999998887766532 11233 5
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.+++++++.|++.+ +-+.|..-+++++.+
T Consensus 199 ~~e~eAL~~Ia~~S---~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 199 QYDQEGLFWIAKKG---DGSVRDMLSFMEQAI 227 (484)
T ss_pred CCCHHHHHHHHHHc---CChHHHHHHHHHHHH
Confidence 69999999999873 344688888887755
No 62
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.67 E-value=2.1e-16 Score=169.74 Aligned_cols=215 Identities=21% Similarity=0.324 Sum_probs=143.1
Q ss_pred CCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh----CCceeecchhhhhhc----CCcccchHHHHHH
Q 007362 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLTQA----GYVGEDVESILYK 377 (606)
Q Consensus 306 g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l----~~~fi~i~~s~l~~s----g~vG~~~~~~l~~ 377 (606)
|.++.++++.++.+.++....+||++|++||||+++|+.|+... ..||+.+||..+.++ .+.|+. +..++-
T Consensus 82 G~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~-kGaftG 160 (403)
T COG1221 82 GESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHE-KGAFTG 160 (403)
T ss_pred ccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccc-cceeec
Confidence 34444444444444555556899999999999999999999554 469999999987643 122222 111222
Q ss_pred HHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCce
Q 007362 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDI 456 (606)
Q Consensus 378 lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~ni 456 (606)
......+.++.+.+++||+|||+.+.+. .|..|+.+|| |....+.+.. ....++
T Consensus 161 a~~~k~Glfe~A~GGtLfLDEI~~LP~~--------------~Q~kLl~~le~g~~~rvG~~~-----------~~~~dV 215 (403)
T COG1221 161 AQGGKAGLFEQANGGTLFLDEIHRLPPE--------------GQEKLLRVLEEGEYRRVGGSQ-----------PRPVDV 215 (403)
T ss_pred ccCCcCchheecCCCEEehhhhhhCCHh--------------HHHHHHHHHHcCceEecCCCC-----------CcCCCc
Confidence 2223445677889999999999999998 9999999999 5555454421 123456
Q ss_pred eeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccc-cCCeEEEcCCcC
Q 007362 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVG-RFPILVSLTALT 535 (606)
Q Consensus 457 i~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~-R~d~iI~f~~Ls 535 (606)
.+||+++- ++++.+..+ ..|.. |+..+|.+++|.
T Consensus 216 Rli~AT~~-~l~~~~~~g--------------------------------------------~dl~~rl~~~~I~LPpLr 250 (403)
T COG1221 216 RLICATTE-DLEEAVLAG--------------------------------------------ADLTRRLNILTITLPPLR 250 (403)
T ss_pred eeeecccc-CHHHHHHhh--------------------------------------------cchhhhhcCceecCCChh
Confidence 67776663 333333211 24455 566789999998
Q ss_pred HH--HHHHHHhhhHHHHHHHHHHHHhcCCcccc-cCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHH
Q 007362 536 ED--QLVKVLTEPKNALGKQYKRLFSMNNVKLH-FTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (606)
Q Consensus 536 ~e--el~~Il~~~l~~L~k~~~~~~~~~~i~l~-i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~a 600 (606)
+. |+..+++.+ .+.+.+ ..+..+. .++++++.|..+.|.+|. |+|+++|+.++.-+
T Consensus 251 ER~~Di~~L~e~F----l~~~~~---~l~~~~~~~~~~a~~~L~~y~~pGNi--rELkN~Ve~~~~~~ 309 (403)
T COG1221 251 ERKEDILLLAEHF----LKSEAR---RLGLPLSVDSPEALRALLAYDWPGNI--RELKNLVERAVAQA 309 (403)
T ss_pred hchhhHHHHHHHH----HHHHHH---HcCCCCCCCCHHHHHHHHhCCCCCcH--HHHHHHHHHHHHHh
Confidence 74 444444433 233322 2244443 446999999999999988 89999999998765
No 63
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.67 E-value=2.1e-15 Score=173.04 Aligned_cols=229 Identities=21% Similarity=0.275 Sum_probs=154.2
Q ss_pred ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHH
Q 007362 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (606)
Q Consensus 263 ~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lA 342 (606)
.+..+...+++ +.|.+.+++.|.+.+.. ++. ...... . -...+.+++|+||||||||++|
T Consensus 143 ~~~~~~~~~~d-i~g~~~~~~~l~~i~~~-~~~---~~~~~~------------~---~~~~~~gill~G~~G~GKt~~~ 202 (644)
T PRK10733 143 TEDQIKTTFAD-VAGCDEAKEEVAELVEY-LRE---PSRFQK------------L---GGKIPKGVLMVGPPGTGKTLLA 202 (644)
T ss_pred CchhhhCcHHH-HcCHHHHHHHHHHHHHH-hhC---HHHHHh------------c---CCCCCCcEEEECCCCCCHHHHH
Confidence 44556666776 79999999999887742 110 000000 0 0112467999999999999999
Q ss_pred HHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHH
Q 007362 343 KTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (606)
Q Consensus 343 ralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~ 422 (606)
+++|+.++.+|+.++++++.+ .++|.. ...++.+|..+... .++||||||+|.+...+.....+.+...+.+++
T Consensus 203 ~~~a~~~~~~f~~is~~~~~~-~~~g~~-~~~~~~~f~~a~~~----~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln 276 (644)
T PRK10733 203 KAIAGEAKVPFFTISGSDFVE-MFVGVG-ASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN 276 (644)
T ss_pred HHHHHHcCCCEEEEehHHhHH-hhhccc-HHHHHHHHHHHHhc----CCcEEEehhHhhhhhccCCCCCCCchHHHHHHH
Confidence 999999999999999998874 477776 55677888776543 789999999999988765544444445567889
Q ss_pred HHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHH
Q 007362 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSS 502 (606)
Q Consensus 423 ~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ 502 (606)
.||..||+.. ....+++|+++|..+
T Consensus 277 ~lL~~mdg~~-------------------~~~~vivIaaTN~p~------------------------------------ 301 (644)
T PRK10733 277 QMLVEMDGFE-------------------GNEGIIVIAATNRPD------------------------------------ 301 (644)
T ss_pred HHHHhhhccc-------------------CCCCeeEEEecCChh------------------------------------
Confidence 9999998632 224567777777432
Q ss_pred HHhhhcchhhhhccCccccc--ccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccC
Q 007362 503 LLESVESSDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (606)
Q Consensus 503 ll~~~~~~~l~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~ 580 (606)
.++|.++ +|||..|.|+.++.++..+|++..+..+ .....++ +..|++.
T Consensus 302 -------------~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~-----------~l~~~~d---~~~la~~-- 352 (644)
T PRK10733 302 -------------VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-----------PLAPDID---AAIIARG-- 352 (644)
T ss_pred -------------hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC-----------CCCCcCC---HHHHHhh--
Confidence 1455555 4999999999999999888887532111 1111111 2334543
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 007362 581 AKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 581 ~~~~GAR~L~~~Ie~~l~~al 601 (606)
..++...+|.+++.+....+.
T Consensus 353 t~G~sgadl~~l~~eAa~~a~ 373 (644)
T PRK10733 353 TPGFSGADLANLVNEAALFAA 373 (644)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 355556677777766655443
No 64
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=7.5e-16 Score=174.98 Aligned_cols=188 Identities=24% Similarity=0.355 Sum_probs=126.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... + ....+||+||+|||||++|++||+.+
T Consensus 14 tFdE-VIGQe~Vv~~L~~aL~~g--R----------------------------L~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 14 DFAS-LVGQEHVVRALTHALDGG--R----------------------------LHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred cHHH-HcCcHHHHHHHHHHHhcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998887411 0 01457999999999999999999999
Q ss_pred CCc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++. +++++..+ -.| ...++.+++...+.....+..||||||+|+|+..
T Consensus 63 nCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas-----~rg---VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~ 134 (830)
T PRK07003 63 NCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS-----NRG---VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH 134 (830)
T ss_pred cCccCCCCCCCcccHHHHHHhcCCCceEEEecccc-----ccc---HHHHHHHHHHHHhccccCCceEEEEeChhhCCHH
Confidence 752 12222211 011 1234555554433323346689999999999887
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.+|.||+.||+ ...+++||++++..
T Consensus 135 --------------A~NALLKtLEE---------------------PP~~v~FILaTtd~-------------------- 159 (830)
T PRK07003 135 --------------AFNAMLKTLEE---------------------PPPHVKFILATTDP-------------------- 159 (830)
T ss_pred --------------HHHHHHHHHHh---------------------cCCCeEEEEEECCh--------------------
Confidence 89999999984 23456677766531
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+++|+ ..+.|.+++.+++.+.+.+. +..++ +
T Consensus 160 -----------------------------~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~I-----------l~~Eg--I 196 (830)
T PRK07003 160 -----------------------------QKIPVTVLSRC-LQFNLKQMPAGHIVSHLERI-----------LGEER--I 196 (830)
T ss_pred -----------------------------hhccchhhhhe-EEEecCCcCHHHHHHHHHHH-----------HHHcC--C
Confidence 12567888998 68999999999988887642 11223 4
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.+++++++.|++.+ .+ +.|...+++++.+
T Consensus 197 ~id~eAL~lIA~~A-~G--smRdALsLLdQAi 225 (830)
T PRK07003 197 AFEPQALRLLARAA-QG--SMRDALSLTDQAI 225 (830)
T ss_pred CCCHHHHHHHHHHc-CC--CHHHHHHHHHHHH
Confidence 58999999999873 22 2466666655544
No 65
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.66 E-value=1.1e-15 Score=156.61 Aligned_cols=177 Identities=26% Similarity=0.357 Sum_probs=119.0
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHH
Q 007362 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 268 ~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~ 347 (606)
.+.+++ ++||+.++..|..++... --.|+|||||||||||+.|+++|+
T Consensus 32 Pkt~de-~~gQe~vV~~L~~a~~~~-------------------------------~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 32 PKTFDE-LAGQEHVVQVLKNALLRR-------------------------------ILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred CCcHHh-hcchHHHHHHHHHHHhhc-------------------------------CCceEEeeCCCCCcHhHHHHHHHH
Confidence 344555 799999999999988520 027999999999999999999999
Q ss_pred HhCCc------eeecchhhhhhcCCcccchHHHHHHHHHhhhhh------hhhcCCCEEEEcccchhhhhhhccccccCc
Q 007362 348 HVNVP------FVIADATTLTQAGYVGEDVESILYKLLAQAEFN------VEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (606)
Q Consensus 348 ~l~~~------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~------l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~ 415 (606)
+++.+ +.+.++++. .|.++...-.+-|...... ..+....||+|||.|.|+.+
T Consensus 80 ~L~~~~~~~~rvl~lnaSde-----rGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd---------- 144 (346)
T KOG0989|consen 80 ALNCEQLFPCRVLELNASDE-----RGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD---------- 144 (346)
T ss_pred HhcCccccccchhhhccccc-----ccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHH----------
Confidence 99762 233444443 2333222222222222111 12234479999999999988
Q ss_pred chhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccc
Q 007362 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVT 495 (606)
Q Consensus 416 s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~ 495 (606)
+|++|++.||.. .++..||+.+|+.+
T Consensus 145 ----aq~aLrr~mE~~---------------------s~~trFiLIcnyls----------------------------- 170 (346)
T KOG0989|consen 145 ----AQAALRRTMEDF---------------------SRTTRFILICNYLS----------------------------- 170 (346)
T ss_pred ----HHHHHHHHHhcc---------------------ccceEEEEEcCChh-----------------------------
Confidence 999999999941 23344444444321
Q ss_pred hhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHH
Q 007362 496 DAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVI 575 (606)
Q Consensus 496 ~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~L 575 (606)
.+++++.+|+. .+.|.++..+++.+.++. ...+++ +.+++++++.|
T Consensus 171 --------------------rii~pi~SRC~-KfrFk~L~d~~iv~rL~~-----------Ia~~E~--v~~d~~al~~I 216 (346)
T KOG0989|consen 171 --------------------RIIRPLVSRCQ-KFRFKKLKDEDIVDRLEK-----------IASKEG--VDIDDDALKLI 216 (346)
T ss_pred --------------------hCChHHHhhHH-HhcCCCcchHHHHHHHHH-----------HHHHhC--CCCCHHHHHHH
Confidence 26778888884 678999999876666543 233345 45999999999
Q ss_pred HHcc
Q 007362 576 AKKA 579 (606)
Q Consensus 576 a~~a 579 (606)
++..
T Consensus 217 ~~~S 220 (346)
T KOG0989|consen 217 AKIS 220 (346)
T ss_pred HHHc
Confidence 9983
No 66
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.66 E-value=7.5e-16 Score=172.50 Aligned_cols=214 Identities=20% Similarity=0.286 Sum_probs=154.0
Q ss_pred CCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHH
Q 007362 304 GSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLA 380 (606)
Q Consensus 304 g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~ 380 (606)
-.|.++.++.+.+....++....+|||+|++||||+++|++|+... +.+|+.++|..+.+. ..-..+|.
T Consensus 189 iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~--------~~e~~lfG 260 (509)
T PRK05022 189 MIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES--------LAESELFG 260 (509)
T ss_pred eeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH--------HHHHHhcC
Confidence 3588899999999999999999999999999999999999999986 479999999876421 01112222
Q ss_pred h-----------hhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee-ecCCCCcccCCCCCc
Q 007362 381 Q-----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV-NVPEKGARKHPRGDS 448 (606)
Q Consensus 381 ~-----------a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~-~i~~~g~~~~~~~~~ 448 (606)
. ..+.+..+.+++|||||||.|... +|..|+++|+...+ .+.+. ..
T Consensus 261 ~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~~ 318 (509)
T PRK05022 261 HVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLA--------------LQAKLLRVLQYGEIQRVGSD--------RS 318 (509)
T ss_pred ccccccCCCcccCCcchhhcCCCEEEecChhhCCHH--------------HHHHHHHHHhcCCEeeCCCC--------cc
Confidence 1 122355678899999999999988 99999999984332 22111 11
Q ss_pred EEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-
Q 007362 449 IQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI- 527 (606)
Q Consensus 449 v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~- 527 (606)
+. .++-+|++++ .++++.+.+. .|..+|+.|+..
T Consensus 319 ~~---~~~RiI~~t~-~~l~~~~~~~-----------------------------------------~f~~dL~~rl~~~ 353 (509)
T PRK05022 319 LR---VDVRVIAATN-RDLREEVRAG-----------------------------------------RFRADLYHRLSVF 353 (509)
T ss_pred ee---cceEEEEecC-CCHHHHHHcC-----------------------------------------CccHHHHhccccc
Confidence 11 2344555554 3444444432 367778888876
Q ss_pred EEEcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHH
Q 007362 528 LVSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (606)
Q Consensus 528 iI~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~a 600 (606)
.|.++||.+ +|+..++..++..+ ...+. ...+.+++++++.|..+.|.+|+ |+|+++|++.+..+
T Consensus 354 ~i~lPpLreR~eDI~~L~~~fl~~~----~~~~~--~~~~~~s~~a~~~L~~y~WPGNv--rEL~~~i~ra~~~~ 420 (509)
T PRK05022 354 PLSVPPLRERGDDVLLLAGYFLEQN----RARLG--LRSLRLSPAAQAALLAYDWPGNV--RELEHVISRAALLA 420 (509)
T ss_pred EeeCCCchhchhhHHHHHHHHHHHH----HHHcC--CCCCCCCHHHHHHHHhCCCCCcH--HHHHHHHHHHHHhc
Confidence 588999986 78777777654443 22221 13357999999999999999998 99999999987644
No 67
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=8.8e-16 Score=154.36 Aligned_cols=167 Identities=25% Similarity=0.337 Sum_probs=118.2
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
.|-|..+.++.|.+.|..++. ++.+...+|- .++.+||||||||||||++|+++|+..+.-|
T Consensus 178 dvggckeqieklrevve~pll---~perfv~lgi---------------dppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLL---HPERFVNLGI---------------DPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred cccchHHHHHHHHHHHhcccc---CHHHHhhcCC---------------CCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 389999999999998864322 1222111221 2358999999999999999999999999999
Q ss_pred eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh---c
Q 007362 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE---G 430 (606)
Q Consensus 354 i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le---g 430 (606)
+++-.+++. .+|+|+. ..+++++|++++.. +-|||||||||.+...|=....+. +.++|..+|+++. |
T Consensus 240 irvigselv-qkyvgeg-armvrelf~martk----kaciiffdeidaiggarfddg~gg---dnevqrtmleli~qldg 310 (435)
T KOG0729|consen 240 IRVIGSELV-QKYVGEG-ARMVRELFEMARTK----KACIIFFDEIDAIGGARFDDGAGG---DNEVQRTMLELINQLDG 310 (435)
T ss_pred EeehhHHHH-HHHhhhh-HHHHHHHHHHhccc----ceEEEEeeccccccCccccCCCCC---cHHHHHHHHHHHHhccC
Confidence 999999999 4699999 78999999999865 679999999999877654332222 3458888887764 3
Q ss_pred eeeecCCCCcccCCCCCcEEEecCceeeeccCCCcC-h-HHHHHhhhcccCCCcCccc
Q 007362 431 TIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD-L-EKTISERRQDSSIGFGAPV 486 (606)
Q Consensus 431 ~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~-l-~~~i~~~~~~~~igf~~~~ 486 (606)
+- .-.||-+++++|..+ | ..+++++|.+..+.|+.++
T Consensus 311 fd-------------------prgnikvlmatnrpdtldpallrpgrldrkvef~lpd 349 (435)
T KOG0729|consen 311 FD-------------------PRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPD 349 (435)
T ss_pred CC-------------------CCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCc
Confidence 11 113455555555443 3 3344666666666665443
No 68
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.65 E-value=1.5e-15 Score=174.45 Aligned_cols=209 Identities=18% Similarity=0.316 Sum_probs=144.0
Q ss_pred CCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhh
Q 007362 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382 (606)
Q Consensus 306 g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a 382 (606)
|.++.+..+.+..+.++....+|||+|++||||+++|++|++.. +.+|+.++|..+.+. ....++|...
T Consensus 329 g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~--------~~~~elfg~~ 400 (638)
T PRK11388 329 QDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE--------ALAEEFLGSD 400 (638)
T ss_pred ECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH--------HHHHHhcCCC
Confidence 34444555555555555566889999999999999999999986 469999999875421 1112233211
Q ss_pred --------hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee-eecCCCCcccCCCCCcEEEec
Q 007362 383 --------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQMDT 453 (606)
Q Consensus 383 --------~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~-~~i~~~g~~~~~~~~~v~idt 453 (606)
.+.+..+.+++||||||+.|+.. +|..|+++|+... +.+... ..+.+
T Consensus 401 ~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~--------------~Q~~Ll~~l~~~~~~~~~~~--------~~~~~-- 456 (638)
T PRK11388 401 RTDSENGRLSKFELAHGGTLFLEKVEYLSPE--------------LQSALLQVLKTGVITRLDSR--------RLIPV-- 456 (638)
T ss_pred CcCccCCCCCceeECCCCEEEEcChhhCCHH--------------HHHHHHHHHhcCcEEeCCCC--------ceEEe--
Confidence 12345568899999999999988 9999999998433 322111 11222
Q ss_pred CceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcC
Q 007362 454 KDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLT 532 (606)
Q Consensus 454 ~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~ 532 (606)
++.+|++++ .++.+++.++ .|.++|+.||.. .|.++
T Consensus 457 -~~riI~~t~-~~l~~~~~~~-----------------------------------------~f~~dL~~~l~~~~i~lP 493 (638)
T PRK11388 457 -DVRVIATTT-ADLAMLVEQN-----------------------------------------RFSRQLYYALHAFEITIP 493 (638)
T ss_pred -eEEEEEecc-CCHHHHHhcC-----------------------------------------CChHHHhhhhceeEEeCC
Confidence 344566555 3455544432 266777778766 68899
Q ss_pred CcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 533 ALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 533 ~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
||.+ +|+..++..++..+.++ .+..+.+++++++.|..+.|++|+ |+|+++|++.+.
T Consensus 494 pLreR~~Di~~L~~~~l~~~~~~-------~~~~~~~s~~a~~~L~~y~WPGNv--reL~~~l~~~~~ 552 (638)
T PRK11388 494 PLRMRREDIPALVNNKLRSLEKR-------FSTRLKIDDDALARLVSYRWPGND--FELRSVIENLAL 552 (638)
T ss_pred ChhhhhhHHHHHHHHHHHHHHHH-------hCCCCCcCHHHHHHHHcCCCCChH--HHHHHHHHHHHH
Confidence 9986 68888888765544322 133457999999999999999988 999999998775
No 69
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.8e-16 Score=159.55 Aligned_cols=173 Identities=27% Similarity=0.408 Sum_probs=126.9
Q ss_pred HhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 269 ~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
+.+.+ |-|+|..+++|.++|..++. ++......| -.+|.+|+|||+||||||+||+++|+.
T Consensus 182 Ety~d-iGGle~QiQEiKEsvELPLt---hPE~YeemG---------------ikpPKGVIlyG~PGTGKTLLAKAVANq 242 (440)
T KOG0726|consen 182 ETYAD-IGGLESQIQEIKESVELPLT---HPEYYEEMG---------------IKPPKGVILYGEPGTGKTLLAKAVANQ 242 (440)
T ss_pred hhhcc-cccHHHHHHHHHHhhcCCCC---CHHHHHHcC---------------CCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence 44444 89999999999999963211 111111111 123589999999999999999999999
Q ss_pred hCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH
Q 007362 349 VNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (606)
Q Consensus 349 l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L 428 (606)
....|+++-.+++. ..|.|+. .+.++++|+.+..+ .++|+||||||++..+|-+.+.+.. +++|..+|++|
T Consensus 243 TSATFlRvvGseLi-QkylGdG-pklvRqlF~vA~e~----apSIvFiDEIdAiGtKRyds~Sgge---rEiQrtmLELL 313 (440)
T KOG0726|consen 243 TSATFLRVVGSELI-QKYLGDG-PKLVRELFRVAEEH----APSIVFIDEIDAIGTKRYDSNSGGE---REIQRTMLELL 313 (440)
T ss_pred cchhhhhhhhHHHH-HHHhccc-hHHHHHHHHHHHhc----CCceEEeehhhhhccccccCCCccH---HHHHHHHHHHH
Confidence 99999999999999 4699998 68999999998876 8999999999999888655443333 56888887776
Q ss_pred h---ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCc-Ch-HHHHHhhhcccCCCcCccccc
Q 007362 429 E---GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV-DL-EKTISERRQDSSIGFGAPVRA 488 (606)
Q Consensus 429 e---g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~-~l-~~~i~~~~~~~~igf~~~~~~ 488 (606)
. |+ +.+. ++-+|+++|.. .| -.+|+++|.+..|.|..++..
T Consensus 314 NQldGF-----------dsrg--------DvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~ 359 (440)
T KOG0726|consen 314 NQLDGF-----------DSRG--------DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 359 (440)
T ss_pred HhccCc-----------cccC--------CeEEEEecccccccCHhhcCCCccccccccCCCchh
Confidence 5 31 1222 23344444433 34 356799999999999888654
No 70
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.4e-15 Score=163.80 Aligned_cols=130 Identities=32% Similarity=0.447 Sum_probs=103.5
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 273 ~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
+.+.|++.+|+.+.+++.....|. |.......+..++||.||||||||+|+++||.+++..
T Consensus 153 ~di~gl~~~k~~l~e~vi~p~lr~-------------------d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at 213 (428)
T KOG0740|consen 153 DDIAGLEDAKQSLKEAVILPLLRP-------------------DLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT 213 (428)
T ss_pred cCCcchhhHHHHhhhhhhhcccch-------------------HhhhccccccchhheecCCCCchHHHHHHHHhhhcce
Confidence 348999999999999986443321 1122233345799999999999999999999999999
Q ss_pred eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 353 FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 353 fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
|+.++++.+. +.|+|+. +..++.+|.-++.. +++||||||||++..+|.. ..+.+.+..+..+|-.+++
T Consensus 214 ff~iSassLt-sK~~Ge~-eK~vralf~vAr~~----qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~ 282 (428)
T KOG0740|consen 214 FFNISASSLT-SKYVGES-EKLVRALFKVARSL----QPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDG 282 (428)
T ss_pred EeeccHHHhh-hhccChH-HHHHHHHHHHHHhc----CCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhcc
Confidence 9999999999 6799999 89999999988766 8999999999999998733 2344444566666666664
No 71
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.64 E-value=2e-15 Score=182.17 Aligned_cols=190 Identities=16% Similarity=0.224 Sum_probs=129.9
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcC---C------cc-------------------------
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAG---Y------VG------------------------- 368 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg---~------vG------------------------- 368 (606)
.++++|||+||||||||+|||+||..+++||+.++++++.+.. | +|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 4578999999999999999999999999999999999988431 0 11
Q ss_pred ------cchH-HHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcc
Q 007362 369 ------EDVE-SILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGAR 441 (606)
Q Consensus 369 ------~~~~-~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~ 441 (606)
..+. ..++.+|+.|+.. .||||||||||.+.... +....+++|+..|+|...
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~----SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~-------- 1766 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAM----SPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCE-------- 1766 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHC----CCeEEEEEchhhcCCCc---------cceehHHHHHHHhccccc--------
Confidence 1111 1266777777654 89999999999997651 122257899999986221
Q ss_pred cCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccc
Q 007362 442 KHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEF 521 (606)
Q Consensus 442 ~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeL 521 (606)
...++++++|+|+|..+ .++|+|
T Consensus 1767 --------~~s~~~VIVIAATNRPD-------------------------------------------------~LDPAL 1789 (2281)
T CHL00206 1767 --------RCSTRNILVIASTHIPQ-------------------------------------------------KVDPAL 1789 (2281)
T ss_pred --------cCCCCCEEEEEeCCCcc-------------------------------------------------cCCHhH
Confidence 01345677777777432 367888
Q ss_pred cc--cCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 007362 522 VG--RFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 522 l~--R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
+. |||..|.+..++..+..+++... . ...++.+.-+...++.|++. +.++.+++|..++.+++.-
T Consensus 1790 LRPGRFDR~I~Ir~Pd~p~R~kiL~IL----l-------~tkg~~L~~~~vdl~~LA~~--T~GfSGADLanLvNEAali 1856 (2281)
T CHL00206 1790 IAPNKLNTCIKIRRLLIPQQRKHFFTL----S-------YTRGFHLEKKMFHTNGFGSI--TMGSNARDLVALTNEALSI 1856 (2281)
T ss_pred cCCCCCCeEEEeCCCCchhHHHHHHHH----H-------hhcCCCCCcccccHHHHHHh--CCCCCHHHHHHHHHHHHHH
Confidence 85 99999999887766555554321 0 01122221111125667766 5777788999999888877
Q ss_pred HHHh
Q 007362 600 AMYE 603 (606)
Q Consensus 600 al~~ 603 (606)
++.+
T Consensus 1857 Airq 1860 (2281)
T CHL00206 1857 SITQ 1860 (2281)
T ss_pred HHHc
Confidence 7654
No 72
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.64 E-value=2.5e-15 Score=168.22 Aligned_cols=216 Identities=21% Similarity=0.322 Sum_probs=149.2
Q ss_pred CCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhc----CCcccchHHHHHH
Q 007362 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA----GYVGEDVESILYK 377 (606)
Q Consensus 305 ~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~s----g~vG~~~~~~l~~ 377 (606)
.|.|+.++.+.+....++....+|||.|++||||+++|++|++.. +.||+.++|..+.+. .+.|+..+ .+..
T Consensus 215 iG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~g-aftg 293 (526)
T TIGR02329 215 LGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEG-AFTG 293 (526)
T ss_pred eeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCccc-cccc
Confidence 467788888888888888888999999999999999999999876 579999999876421 12222100 0000
Q ss_pred HH-HhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee-ecCCCCcccCCCCCcEEEecCc
Q 007362 378 LL-AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV-NVPEKGARKHPRGDSIQMDTKD 455 (606)
Q Consensus 378 lf-~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~-~i~~~g~~~~~~~~~v~idt~n 455 (606)
.. ....+.+..+++++||||||+.|+.. +|..|+.+|+.+.+ .+... ..+.+ +
T Consensus 294 a~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~~Ll~~L~~~~~~r~g~~--------~~~~~---d 348 (526)
T TIGR02329 294 ARRGGRTGLIEAAHRGTLFLDEIGEMPLP--------------LQTRLLRVLEEREVVRVGGT--------EPVPV---D 348 (526)
T ss_pred ccccccccchhhcCCceEEecChHhCCHH--------------HHHHHHHHHhcCcEEecCCC--------ceeee---c
Confidence 00 01223455678899999999999988 99999999985433 22111 11122 3
Q ss_pred eeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcCCc
Q 007362 456 ILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTAL 534 (606)
Q Consensus 456 ii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~L 534 (606)
+-+|++++ .++++.+.++ .|.++|+.|++. .|.++||
T Consensus 349 vRiIaat~-~~l~~~v~~g-----------------------------------------~fr~dL~~rL~~~~I~lPPL 386 (526)
T TIGR02329 349 VRVVAATH-CALTTAVQQG-----------------------------------------RFRRDLFYRLSILRIALPPL 386 (526)
T ss_pred ceEEeccC-CCHHHHhhhc-----------------------------------------chhHHHHHhcCCcEEeCCCc
Confidence 44555554 3444444322 266777888865 7889999
Q ss_pred CH--HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHH-------HHHccCCCCCChHHHHHHHHHHHHH
Q 007362 535 TE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRV-------IAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 535 s~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~-------La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
.+ +|+..++..++..+... .+ +.+++++++. |..+.|++|+ |+|+++|++++..
T Consensus 387 ReR~eDI~~L~~~fl~~~~~~-------~~--~~~~~~a~~~~~~~~~~L~~y~WPGNv--rEL~nvier~~i~ 449 (526)
T TIGR02329 387 RERPGDILPLAAEYLVQAAAA-------LR--LPDSEAAAQVLAGVADPLQRYPWPGNV--RELRNLVERLALE 449 (526)
T ss_pred hhchhHHHHHHHHHHHHHHHH-------cC--CCCCHHHHHHhHHHHHHHHhCCCCchH--HHHHHHHHHHHHh
Confidence 86 78888888765544322 12 3488999888 9999999988 9999999998764
No 73
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.64 E-value=9.8e-16 Score=171.52 Aligned_cols=215 Identities=21% Similarity=0.302 Sum_probs=143.4
Q ss_pred CCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH-----------hCCceeecchhhhhhc----CCccc
Q 007362 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH-----------VNVPFVIADATTLTQA----GYVGE 369 (606)
Q Consensus 305 ~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~-----------l~~~fi~i~~s~l~~s----g~vG~ 369 (606)
.|.|+.+..+.+....++....+|||+|++||||+++|++|++. .+.||+.++|..+.+. .+.|+
T Consensus 222 iG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~ 301 (538)
T PRK15424 222 LGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGY 301 (538)
T ss_pred eeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCC
Confidence 35666677777776777777899999999999999999999988 3579999999876432 11222
Q ss_pred chHHHHHHHH-HhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee-ecCCCCcccCCCCC
Q 007362 370 DVESILYKLL-AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV-NVPEKGARKHPRGD 447 (606)
Q Consensus 370 ~~~~~l~~lf-~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~-~i~~~g~~~~~~~~ 447 (606)
..+ .+.... ....+.+..+++++||||||+.|+.. +|..|+.+|+.+.+ .+.+. .
T Consensus 302 ~~g-aftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~--------------~Q~kLl~~L~e~~~~r~G~~--------~ 358 (538)
T PRK15424 302 EEG-AFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP--------------LQTRLLRVLEEKEVTRVGGH--------Q 358 (538)
T ss_pred ccc-cccCccccccCCchhccCCCEEEEcChHhCCHH--------------HHHHHHhhhhcCeEEecCCC--------c
Confidence 100 000000 01123456678899999999999998 99999999985433 22111 1
Q ss_pred cEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe
Q 007362 448 SIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI 527 (606)
Q Consensus 448 ~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~ 527 (606)
.+. -++-+|++++ .++++.+.+++ |.++|+.|+..
T Consensus 359 ~~~---~dvRiIaat~-~~L~~~v~~g~-----------------------------------------Fr~dL~yrL~~ 393 (538)
T PRK15424 359 PVP---VDVRVISATH-CDLEEDVRQGR-----------------------------------------FRRDLFYRLSI 393 (538)
T ss_pred eec---cceEEEEecC-CCHHHHHhccc-----------------------------------------chHHHHHHhcC
Confidence 112 2344566554 34555555433 55667777765
Q ss_pred -EEEcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH-------HHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 528 -LVSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA-------LRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 528 -iI~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a-------l~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.|.++||.+ +|+..++..++.....++ +. .+++++ ++.|..+.|++|. |+|+++|++++
T Consensus 394 ~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-------~~--~~~~~a~~~~~~a~~~L~~y~WPGNv--REL~nvier~~ 462 (538)
T PRK15424 394 LRLQLPPLRERVADILPLAESFLKQSLAAL-------SA--PFSAALRQGLQQCETLLLHYDWPGNV--RELRNLMERLA 462 (538)
T ss_pred CeecCCChhhchhHHHHHHHHHHHHHHHHc-------CC--CCCHHHHHhhHHHHHHHHhCCCCchH--HHHHHHHHHHH
Confidence 688888886 788888876544432221 22 245544 4889999999888 99999999987
Q ss_pred H
Q 007362 598 T 598 (606)
Q Consensus 598 ~ 598 (606)
.
T Consensus 463 i 463 (538)
T PRK15424 463 L 463 (538)
T ss_pred H
Confidence 5
No 74
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.64 E-value=2.8e-15 Score=168.51 Aligned_cols=217 Identities=24% Similarity=0.336 Sum_probs=138.5
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV- 349 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l- 349 (606)
|++ ++||+++++.|..++.. ..+.++||+||||||||++|+++++.+
T Consensus 64 f~~-iiGqs~~i~~l~~al~~-------------------------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 64 FDE-IIGQEEGIKALKAALCG-------------------------------PNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred HHH-eeCcHHHHHHHHHHHhC-------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 444 89999999888765420 113789999999999999999998753
Q ss_pred ---------CCceeecchhhh--hhcCC----cccchHHHH--HHHH------HhhhhhhhhcCCCEEEEcccchhhhhh
Q 007362 350 ---------NVPFVIADATTL--TQAGY----VGEDVESIL--YKLL------AQAEFNVEAAQQGMVYIDEVDKITKKA 406 (606)
Q Consensus 350 ---------~~~fi~i~~s~l--~~sg~----vG~~~~~~l--~~lf------~~a~~~l~~a~~~ILfIDEiD~l~~~r 406 (606)
+.+|+.++|+.. .+.++ ++....... ...+ +...+.+..+++++|||||||.|+..
T Consensus 112 ~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~- 190 (531)
T TIGR02902 112 KNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV- 190 (531)
T ss_pred hccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-
Confidence 357899998642 11111 111000000 0000 01123355678899999999999998
Q ss_pred hccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCC----------CCcEEEecCceeeeccCCCcChHHHHHhhhc
Q 007362 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPR----------GDSIQMDTKDILFICGGAFVDLEKTISERRQ 476 (606)
Q Consensus 407 ~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~----------~~~v~idt~nii~I~tgn~~~l~~~i~~~~~ 476 (606)
+|+.||+.||...+.+.......... ...+ ..++.+|++++..
T Consensus 191 -------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~rlI~ATt~~----------- 243 (531)
T TIGR02902 191 -------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGL---PADFRLIGATTRN----------- 243 (531)
T ss_pred -------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCc---ccceEEEEEecCC-----------
Confidence 99999999996554432110000000 0011 2334455544321
Q ss_pred ccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHH
Q 007362 477 DSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKR 556 (606)
Q Consensus 477 ~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~ 556 (606)
...+.|++++|+. .+.|.+|+.+|+.+|++..+.
T Consensus 244 -------------------------------------p~~L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~-------- 277 (531)
T TIGR02902 244 -------------------------------------PEEIPPALRSRCV-EIFFRPLLDEEIKEIAKNAAE-------- 277 (531)
T ss_pred -------------------------------------cccCChHHhhhhh-eeeCCCCCHHHHHHHHHHHHH--------
Confidence 1126788999984 678999999999988875311
Q ss_pred HHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHH
Q 007362 557 LFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 557 ~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
...+.+++++++.|..+++ ..|++.++++.....++.
T Consensus 278 -----k~~i~is~~al~~I~~y~~----n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 278 -----KIGINLEKHALELIVKYAS----NGREAVNIVQLAAGIALG 314 (531)
T ss_pred -----HcCCCcCHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhh
Confidence 1235699999999998765 359999999988766554
No 75
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.5e-15 Score=174.69 Aligned_cols=220 Identities=24% Similarity=0.314 Sum_probs=155.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ |.|++.++..|+++|...|.....-.. --.-+++++||+||||||||++|+++|..+
T Consensus 263 ~fd~-vggl~~~i~~LKEmVl~PLlyPE~f~~------------------~~itpPrgvL~~GppGTGkTl~araLa~~~ 323 (1080)
T KOG0732|consen 263 GFDS-VGGLENYINQLKEMVLLPLLYPEFFDN------------------FNITPPRGVLFHGPPGTGKTLMARALAAAC 323 (1080)
T ss_pred Cccc-cccHHHHHHHHHHHHHhHhhhhhHhhh------------------cccCCCcceeecCCCCCchhHHHHhhhhhh
Confidence 3444 899999999999999866554211110 001235889999999999999999999988
Q ss_pred -----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHH
Q 007362 350 -----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQAL 424 (606)
Q Consensus 350 -----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~L 424 (606)
...|+.-+..+.. ++|+|+. +..++.+|+++... +++|||+||||.|++.|.+....-+.| +...|
T Consensus 324 s~~~~kisffmrkgaD~l-skwvgEa-ERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~S---IvSTL 394 (1080)
T KOG0732|consen 324 SRGNRKISFFMRKGADCL-SKWVGEA-ERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHAS---IVSTL 394 (1080)
T ss_pred cccccccchhhhcCchhh-ccccCcH-HHHHHHHHHHHhcc----CceEEeccccccccccccchHHHhhhh---HHHHH
Confidence 3567777777777 6799999 78899999999876 899999999999999887666666666 99999
Q ss_pred HHHHhceeeecCCCCcccCCCCCcEEEecCce-eeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHH
Q 007362 425 LKMLEGTIVNVPEKGARKHPRGDSIQMDTKDI-LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (606)
Q Consensus 425 L~~Leg~~~~i~~~g~~~~~~~~~v~idt~ni-i~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~l 503 (606)
|.+|+| ++++-- ++|.++|..+
T Consensus 395 LaLmdG--------------------ldsRgqVvvigATnRpd------------------------------------- 417 (1080)
T KOG0732|consen 395 LALMDG--------------------LDSRGQVVVIGATNRPD------------------------------------- 417 (1080)
T ss_pred HHhccC--------------------CCCCCceEEEcccCCcc-------------------------------------
Confidence 999997 344443 4444454321
Q ss_pred HhhhcchhhhhccCcccc--cccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCC
Q 007362 504 LESVESSDLIAYGLIPEF--VGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATA 581 (606)
Q Consensus 504 l~~~~~~~l~~~~l~PeL--l~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~ 581 (606)
.+.|+| -+|||..+.|+-.+.++..+|+... .....-.+....+.+|++. .
T Consensus 418 ------------a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ih-------------trkw~~~i~~~l~~~la~~--t 470 (1080)
T KOG0732|consen 418 ------------AIDPALRRPGRFDREFYFPLPDVDARAKILDIH-------------TRKWEPPISRELLLWLAEE--T 470 (1080)
T ss_pred ------------ccchhhcCCcccceeEeeeCCchHHHHHHHHHh-------------ccCCCCCCCHHHHHHHHHh--c
Confidence 144555 4778888888877777777777631 1122334666777777765 3
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 007362 582 KNTGARGLRAILESILTEAM 601 (606)
Q Consensus 582 ~~~GAR~L~~~Ie~~l~~al 601 (606)
.+++...|+.+.......++
T Consensus 471 ~gy~gaDlkaLCTeAal~~~ 490 (1080)
T KOG0732|consen 471 SGYGGADLKALCTEAALIAL 490 (1080)
T ss_pred cccchHHHHHHHHHHhhhhh
Confidence 44544456666665555544
No 76
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.64 E-value=4.3e-15 Score=162.31 Aligned_cols=165 Identities=27% Similarity=0.408 Sum_probs=116.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
.+++|+||||||||++|+++|+.++.+|+.+++.... ...++.+++.+..........||||||||++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~---------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG---------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc---------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 5899999999999999999999999999988875421 1233444444432222336689999999999877
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.|+.|+..|+.. .+++|.+++...
T Consensus 108 --------------~q~~LL~~le~~-----------------------~iilI~att~n~------------------- 131 (413)
T PRK13342 108 --------------QQDALLPHVEDG-----------------------TITLIGATTENP------------------- 131 (413)
T ss_pred --------------HHHHHHHHhhcC-----------------------cEEEEEeCCCCh-------------------
Confidence 899999998731 123443332110
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
...+.+.+++|+ .++.|.+++.+++..++...+... ..++ +
T Consensus 132 ----------------------------~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~---------~~~~-i 172 (413)
T PRK13342 132 ----------------------------SFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDK---------ERGL-V 172 (413)
T ss_pred ----------------------------hhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHh---------hcCC-C
Confidence 112567889998 688999999999998887642221 1122 4
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.+++++++.|++.+ +-..|.+.++++..+
T Consensus 173 ~i~~~al~~l~~~s---~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 173 ELDDEALDALARLA---NGDARRALNLLELAA 201 (413)
T ss_pred CCCHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 68999999999874 334688888888763
No 77
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.63 E-value=9.5e-15 Score=152.53 Aligned_cols=204 Identities=23% Similarity=0.368 Sum_probs=129.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ ++||+++++.|..++...- ... ....+++|+||||||||++|+++|+.+
T Consensus 2 ~~~~-~iG~~~~~~~l~~~l~~~~-----~~~---------------------~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 2 LLAE-FIGQEKVKEQLQLFIEAAK-----MRQ---------------------EALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CHHH-HcCHHHHHHHHHHHHHHHH-----hcC---------------------CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3455 7999999999988774110 000 013689999999999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+..+..+++..+... . .+...+... ..+.||||||||.+... +++.|+.+|+
T Consensus 55 ~~~~~~~~~~~~~~~-------~-~l~~~l~~~------~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~ 106 (305)
T TIGR00635 55 GVNLKITSGPALEKP-------G-DLAAILTNL------EEGDVLFIDEIHRLSPA--------------VEELLYPAME 106 (305)
T ss_pred CCCEEEeccchhcCc-------h-hHHHHHHhc------ccCCEEEEehHhhhCHH--------------HHHHhhHHHh
Confidence 887766655433211 1 121222211 25679999999999876 7888999988
Q ss_pred ceeeecC-CCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhc
Q 007362 430 GTIVNVP-EKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (606)
Q Consensus 430 g~~~~i~-~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~ 508 (606)
+....+- ..+ .....+.+....+++|.+++..
T Consensus 107 ~~~~~~v~~~~----~~~~~~~~~~~~~~li~~t~~~------------------------------------------- 139 (305)
T TIGR00635 107 DFRLDIVIGKG----PSARSVRLDLPPFTLVGATTRA------------------------------------------- 139 (305)
T ss_pred hhheeeeeccC----ccccceeecCCCeEEEEecCCc-------------------------------------------
Confidence 5332210 110 0001112222334445444321
Q ss_pred chhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHH
Q 007362 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARG 588 (606)
Q Consensus 509 ~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~ 588 (606)
..+.+++.+||..++.|.+++.+++.+++.+... . ..+.++++++++|++.+ ... .|.
T Consensus 140 ------~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~-----------~--~~~~~~~~al~~ia~~~-~G~--pR~ 197 (305)
T TIGR00635 140 ------GMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG-----------L--LNVEIEPEAALEIARRS-RGT--PRI 197 (305)
T ss_pred ------cccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH-----------H--hCCCcCHHHHHHHHHHh-CCC--cch
Confidence 1256788999988999999999999999875311 1 13569999999999873 222 366
Q ss_pred HHHHHHHHH
Q 007362 589 LRAILESIL 597 (606)
Q Consensus 589 L~~~Ie~~l 597 (606)
+.++++.+.
T Consensus 198 ~~~ll~~~~ 206 (305)
T TIGR00635 198 ANRLLRRVR 206 (305)
T ss_pred HHHHHHHHH
Confidence 666666543
No 78
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.63 E-value=1.1e-14 Score=154.23 Aligned_cols=207 Identities=27% Similarity=0.379 Sum_probs=135.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ ++||+++++.|..++..... .+ .+..+++|+||||||||++|+++|+.+
T Consensus 23 ~~~~-~vG~~~~~~~l~~~l~~~~~--------~~------------------~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 23 SLDE-FIGQEKVKENLKIFIEAAKK--------RG------------------EALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CHHH-hcCcHHHHHHHHHHHHHHHh--------cC------------------CCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 3444 79999999999887742100 00 123689999999999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+..+..+++..+.. ...+..++... ..+.||||||||.+... +++.|+..|+
T Consensus 76 ~~~~~~~~~~~~~~--------~~~l~~~l~~l------~~~~vl~IDEi~~l~~~--------------~~e~l~~~~e 127 (328)
T PRK00080 76 GVNIRITSGPALEK--------PGDLAAILTNL------EEGDVLFIDEIHRLSPV--------------VEEILYPAME 127 (328)
T ss_pred CCCeEEEecccccC--------hHHHHHHHHhc------ccCCEEEEecHhhcchH--------------HHHHHHHHHH
Confidence 98877666543321 12222333221 25689999999998776 7777888888
Q ss_pred ceeeecC-CCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhc
Q 007362 430 GTIVNVP-EKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVE 508 (606)
Q Consensus 430 g~~~~i~-~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~ 508 (606)
+..+.+- +.+ .....+.+....+++|++++..
T Consensus 128 ~~~~~~~l~~~----~~~~~~~~~l~~~~li~at~~~------------------------------------------- 160 (328)
T PRK00080 128 DFRLDIMIGKG----PAARSIRLDLPPFTLIGATTRA------------------------------------------- 160 (328)
T ss_pred hcceeeeeccC----ccccceeecCCCceEEeecCCc-------------------------------------------
Confidence 5433211 111 0111222233345566655521
Q ss_pred chhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHH
Q 007362 509 SSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARG 588 (606)
Q Consensus 509 ~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~ 588 (606)
..+.+++.+||..++.|.+++.+++.+|+.... . ...+.++++++++|++.+ .. ..|.
T Consensus 161 ------~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~-----------~--~~~~~~~~~~~~~ia~~~-~G--~pR~ 218 (328)
T PRK00080 161 ------GLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSA-----------R--ILGVEIDEEGALEIARRS-RG--TPRI 218 (328)
T ss_pred ------ccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHH-----------H--HcCCCcCHHHHHHHHHHc-CC--CchH
Confidence 125677889998899999999999999987531 1 124569999999999874 22 2377
Q ss_pred HHHHHHHHHHHH
Q 007362 589 LRAILESILTEA 600 (606)
Q Consensus 589 L~~~Ie~~l~~a 600 (606)
+..+++++..-+
T Consensus 219 a~~~l~~~~~~a 230 (328)
T PRK00080 219 ANRLLRRVRDFA 230 (328)
T ss_pred HHHHHHHHHHHH
Confidence 777776654433
No 79
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.63 E-value=4.3e-15 Score=166.76 Aligned_cols=208 Identities=20% Similarity=0.354 Sum_probs=139.8
Q ss_pred ChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhh--
Q 007362 308 EPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQA-- 382 (606)
Q Consensus 308 s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a-- 382 (606)
++.++.+.+..+.++....+|||+|++||||+++|++++... +.||+.++|..+.+. ..-..+|...
T Consensus 210 s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~--------~~e~elFG~~~~ 281 (520)
T PRK10820 210 SPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD--------VVESELFGHAPG 281 (520)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH--------HHHHHhcCCCCC
Confidence 333333333344444455889999999999999999999876 469999999876421 1111223211
Q ss_pred ---------hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee-eecCCCCcccCCCCCcEEEe
Q 007362 383 ---------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQMD 452 (606)
Q Consensus 383 ---------~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~-~~i~~~g~~~~~~~~~v~id 452 (606)
.+.+..+.+++||||||+.++.. +|..|+++++... ..+.+. ..+.
T Consensus 282 ~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~~~~-- 337 (520)
T PRK10820 282 AYPNALEGKKGFFEQANGGSVLLDEIGEMSPR--------------MQAKLLRFLNDGTFRRVGED--------HEVH-- 337 (520)
T ss_pred CcCCcccCCCChhhhcCCCEEEEeChhhCCHH--------------HHHHHHHHHhcCCcccCCCC--------ccee--
Confidence 23345567899999999999988 9999999998432 221111 1112
Q ss_pred cCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEc
Q 007362 453 TKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSL 531 (606)
Q Consensus 453 t~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f 531 (606)
.++-+|++++ .++.+++.++. |.++|+.|+.. .|.+
T Consensus 338 -~~vRiI~st~-~~l~~l~~~g~-----------------------------------------f~~dL~~rL~~~~i~l 374 (520)
T PRK10820 338 -VDVRVICATQ-KNLVELVQKGE-----------------------------------------FREDLYYRLNVLTLNL 374 (520)
T ss_pred -eeeEEEEecC-CCHHHHHHcCC-----------------------------------------ccHHHHhhcCeeEEeC
Confidence 2344666544 34555444322 66778888765 7889
Q ss_pred CCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCc-ccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 007362 532 TALTE--DQLVKVLTEPKNALGKQYKRLFSMNNV-KLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 532 ~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i-~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
+||.+ +|+..++..++..+..+ .+. ...++++++++|..+.|..|. |+|+++|++.+..
T Consensus 375 PpLreR~~Di~~L~~~fl~~~~~~-------~g~~~~~ls~~a~~~L~~y~WPGNv--reL~nvl~~a~~~ 436 (520)
T PRK10820 375 PPLRDRPQDIMPLTELFVARFADE-------QGVPRPKLAADLNTVLTRYGWPGNV--RQLKNAIYRALTQ 436 (520)
T ss_pred CCcccChhHHHHHHHHHHHHHHHH-------cCCCCCCcCHHHHHHHhcCCCCCHH--HHHHHHHHHHHHh
Confidence 99986 67777777654443322 232 346999999999999999988 9999999988763
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=4.1e-15 Score=164.62 Aligned_cols=187 Identities=26% Similarity=0.416 Sum_probs=125.5
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+||+++++.|..++... ..+..+||+|||||||||+|+++|+.++
T Consensus 13 ~~d-ivGq~~i~~~L~~~i~~~------------------------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 13 FSE-VVGQDHVKKLIINALKKN------------------------------SISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHH-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344 899999999888777411 0124589999999999999999999986
Q ss_pred C------------------------ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhh
Q 007362 351 V------------------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (606)
Q Consensus 351 ~------------------------~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r 406 (606)
. .++.++++. ..| ...++.+.+.+......+...||||||+|.++..
T Consensus 62 ~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~-----~~g---id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~- 132 (472)
T PRK14962 62 CENRKGVEPCNECRACRSIDEGTFMDVIELDAAS-----NRG---IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE- 132 (472)
T ss_pred cccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc-----cCC---HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-
Confidence 4 233333321 111 1234444444332222245679999999999876
Q ss_pred hccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccc
Q 007362 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (606)
Q Consensus 407 ~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~ 486 (606)
.++.|++.|+. ...+++||++++..
T Consensus 133 -------------a~~~LLk~LE~---------------------p~~~vv~Ilattn~--------------------- 157 (472)
T PRK14962 133 -------------AFNALLKTLEE---------------------PPSHVVFVLATTNL--------------------- 157 (472)
T ss_pred -------------HHHHHHHHHHh---------------------CCCcEEEEEEeCCh---------------------
Confidence 89999999983 12335555544311
Q ss_pred ccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccc
Q 007362 487 RANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLH 566 (606)
Q Consensus 487 ~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~ 566 (606)
..+.+.+.+|+ .++.|.+++.+++..++... +...+ +.
T Consensus 158 ----------------------------~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i-----------~~~eg--i~ 195 (472)
T PRK14962 158 ----------------------------EKVPPTIISRC-QVIEFRNISDELIIKRLQEV-----------AEAEG--IE 195 (472)
T ss_pred ----------------------------HhhhHHHhcCc-EEEEECCccHHHHHHHHHHH-----------HHHcC--CC
Confidence 01456778888 48999999999988877642 11223 56
Q ss_pred cCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 567 FTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 567 i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
++++++++|++.+ +.++|.+-+.++.++
T Consensus 196 i~~eal~~Ia~~s---~GdlR~aln~Le~l~ 223 (472)
T PRK14962 196 IDREALSFIAKRA---SGGLRDALTMLEQVW 223 (472)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 8999999999873 345687777777654
No 81
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5e-15 Score=166.49 Aligned_cols=185 Identities=24% Similarity=0.361 Sum_probs=121.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ ||||+++++.|..++.+. + ....+||+||+|||||++|+.||+.++
T Consensus 15 Fdd-VIGQe~vv~~L~~al~~g--R----------------------------LpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 15 FTT-LVGQEHVVRALTHALEQQ--R----------------------------LHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHH-HcCcHHHHHHHHHHHHhC--C----------------------------CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444 899999999998888521 0 124579999999999999999999997
Q ss_pred Cc-----------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccch
Q 007362 351 VP-----------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 351 ~~-----------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
+. +++++... ..+ ...++++.+...+.-...+..|+||||+|+
T Consensus 64 C~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas-----~~g---VDdIReLie~~~~~P~~gr~KViIIDEah~ 135 (700)
T PRK12323 64 CTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS-----NRG---VDEMAQLLDKAVYAPTAGRFKVYMIDEVHM 135 (700)
T ss_pred CCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccc-----cCC---HHHHHHHHHHHHhchhcCCceEEEEEChHh
Confidence 61 11111110 011 233455555444333344668999999999
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCC
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~ig 481 (606)
|+.. .+|.||+.||. ...+++||++++..
T Consensus 136 Ls~~--------------AaNALLKTLEE---------------------PP~~v~FILaTtep---------------- 164 (700)
T PRK12323 136 LTNH--------------AFNAMLKTLEE---------------------PPEHVKFILATTDP---------------- 164 (700)
T ss_pred cCHH--------------HHHHHHHhhcc---------------------CCCCceEEEEeCCh----------------
Confidence 9887 89999999984 22455666665521
Q ss_pred cCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 007362 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMN 561 (606)
Q Consensus 482 f~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~ 561 (606)
..+.+.+++|+ ..+.|..++.+++.+.+.+. +...
T Consensus 165 ---------------------------------~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~I-----------l~~E 199 (700)
T PRK12323 165 ---------------------------------QKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAI-----------LGEE 199 (700)
T ss_pred ---------------------------------HhhhhHHHHHH-HhcccCCCChHHHHHHHHHH-----------HHHc
Confidence 11456677777 58889999998887776642 1112
Q ss_pred CcccccCHHHHHHHHHccCCCCCChHHHHHHHHH
Q 007362 562 NVKLHFTEKALRVIAKKATAKNTGARGLRAILES 595 (606)
Q Consensus 562 ~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~ 595 (606)
+ +.+++++++.|++.+ +-+.|...+++++
T Consensus 200 g--i~~d~eAL~~IA~~A---~Gs~RdALsLLdQ 228 (700)
T PRK12323 200 G--IAHEVNALRLLAQAA---QGSMRDALSLTDQ 228 (700)
T ss_pred C--CCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 3 457888888888763 2234555555543
No 82
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.62 E-value=7.9e-15 Score=169.79 Aligned_cols=219 Identities=19% Similarity=0.311 Sum_probs=151.6
Q ss_pred CCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhh----cCCcccchHHHH
Q 007362 303 KGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQ----AGYVGEDVESIL 375 (606)
Q Consensus 303 ~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~----sg~vG~~~~~~l 375 (606)
.-.|.++.+..+.+....++....+|||+|++|||||++|++|+... +.+|+.++|..+.+ ..++|..... +
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~-~ 455 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA-F 455 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccccc-c
Confidence 34688899999999999999999999999999999999999999876 56999999986532 1122221000 0
Q ss_pred HHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee-ecCCCCcccCCCCCcEEEecC
Q 007362 376 YKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV-NVPEKGARKHPRGDSIQMDTK 454 (606)
Q Consensus 376 ~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~-~i~~~g~~~~~~~~~v~idt~ 454 (606)
..........+..+.+++||||||+.+... +|..|+.+|+...+ .+... .. ...
T Consensus 456 ~g~~~~~~g~le~a~~GtL~Ldei~~L~~~--------------~Q~~L~~~l~~~~~~~~g~~--------~~---~~~ 510 (686)
T PRK15429 456 TGASAQRIGRFELADKSSLFLDEVGDMPLE--------------LQPKLLRVLQEQEFERLGSN--------KI---IQT 510 (686)
T ss_pred cccccchhhHHHhcCCCeEEEechhhCCHH--------------HHHHHHHHHHhCCEEeCCCC--------Cc---ccc
Confidence 000001112344567899999999999988 99999999984332 22111 01 112
Q ss_pred ceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcCC
Q 007362 455 DILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTA 533 (606)
Q Consensus 455 nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~ 533 (606)
++-+|++++ .++++.+..+ .|.++|+.|+.. .|.++|
T Consensus 511 ~~RiI~~t~-~~l~~~~~~~-----------------------------------------~f~~~L~~~l~~~~i~lPp 548 (686)
T PRK15429 511 DVRLIAATN-RDLKKMVADR-----------------------------------------EFRSDLYYRLNVFPIHLPP 548 (686)
T ss_pred eEEEEEeCC-CCHHHHHHcC-----------------------------------------cccHHHHhccCeeEEeCCC
Confidence 444566554 3444444322 266777788776 588999
Q ss_pred cCH--HHHHHHHhhhHHHHHHHHHHHHhcCCccc-ccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 534 LTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKL-HFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 534 Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l-~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
|.+ +|+..++..++..+.++ .+..+ .+++++++.|..+.|++|. |+|+++|++.+.
T Consensus 549 LreR~~Di~~L~~~~l~~~~~~-------~~~~~~~~s~~al~~L~~y~WPGNv--rEL~~~i~~a~~ 607 (686)
T PRK15429 549 LRERPEDIPLLVKAFTFKIARR-------MGRNIDSIPAETLRTLSNMEWPGNV--RELENVIERAVL 607 (686)
T ss_pred hhhhHhHHHHHHHHHHHHHHHH-------cCCCCCCcCHHHHHHHHhCCCCCcH--HHHHHHHHHHHH
Confidence 986 77877777654444332 23333 4999999999999999988 999999999885
No 83
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.62 E-value=3.6e-15 Score=147.70 Aligned_cols=241 Identities=24% Similarity=0.335 Sum_probs=164.3
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
+.|..+.+ |||.|+.++.|+..... | -..|++|.|||||||||.
T Consensus 21 YrP~~l~d-----IVGNe~tv~rl~via~~------------g-------------------nmP~liisGpPG~GKTTs 64 (333)
T KOG0991|consen 21 YRPSVLQD-----IVGNEDTVERLSVIAKE------------G-------------------NMPNLIISGPPGTGKTTS 64 (333)
T ss_pred hCchHHHH-----hhCCHHHHHHHHHHHHc------------C-------------------CCCceEeeCCCCCchhhH
Confidence 44544444 89999999999776631 0 027899999999999999
Q ss_pred HHHHHHHh-C----CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcc
Q 007362 342 AKTLARHV-N----VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (606)
Q Consensus 342 AralA~~l-~----~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s 416 (606)
+.+||+++ | --++++++++ ..|.++.+.--+.|.+.+..+...+..||+|||+|.++..
T Consensus 65 i~~LAr~LLG~~~ke~vLELNASd-----eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g----------- 128 (333)
T KOG0991|consen 65 ILCLARELLGDSYKEAVLELNASD-----ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG----------- 128 (333)
T ss_pred HHHHHHHHhChhhhhHhhhccCcc-----ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-----------
Confidence 99999988 3 2345666654 3466655554566766665555567789999999999888
Q ss_pred hhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccccc-ccc
Q 007362 417 GEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA-GVT 495 (606)
Q Consensus 417 ~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~-~~~ 495 (606)
+|++|.+.||= .-.++.+.++| |. .+++|++.++++ +.++. +++
T Consensus 129 ---AQQAlRRtMEi-------------------yS~ttRFalaC--N~--s~KIiEPIQSRC---------AiLRyskls 173 (333)
T KOG0991|consen 129 ---AQQALRRTMEI-------------------YSNTTRFALAC--NQ--SEKIIEPIQSRC---------AILRYSKLS 173 (333)
T ss_pred ---HHHHHHHHHHH-------------------Hcccchhhhhh--cc--hhhhhhhHHhhh---------HhhhhcccC
Confidence 99999999981 12344444444 32 356777666553 44555 788
Q ss_pred hhHhHHHHHhhhcchhh------------hhccCcccccccCCeEE-EcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCC
Q 007362 496 DAAVTSSLLESVESSDL------------IAYGLIPEFVGRFPILV-SLTALTEDQLVKVLTEPKNALGKQYKRLFSMNN 562 (606)
Q Consensus 496 ~~~~~~~ll~~~~~~~l------------~~~~l~PeLl~R~d~iI-~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~ 562 (606)
+.++..+|++-++.+.+ ..++-...-++.+...+ .|.-.+.+.+.+|++.+...+.+++...+...+
T Consensus 174 d~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~ 253 (333)
T KOG0991|consen 174 DQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLKRN 253 (333)
T ss_pred HHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHhcc
Confidence 89999999988876642 23444455566666644 477788899999999998888888777665555
Q ss_pred cccccCHHHHHHHHHccCCCCCChHHHHHHHHH
Q 007362 563 VKLHFTEKALRVIAKKATAKNTGARGLRAILES 595 (606)
Q Consensus 563 i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~ 595 (606)
++ ++++.|.+ .|...|..-++-.-+.+
T Consensus 254 ~~-----~A~~il~~-lw~lgysp~Dii~~~FR 280 (333)
T KOG0991|consen 254 ID-----EALKILAE-LWKLGYSPEDIITTLFR 280 (333)
T ss_pred HH-----HHHHHHHH-HHHcCCCHHHHHHHHHH
Confidence 43 45555554 35555655444444433
No 84
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=6.2e-15 Score=166.08 Aligned_cols=187 Identities=22% Similarity=0.307 Sum_probs=126.7
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+||+++++.|..++.+. .....+||+||+|||||++|+++|+.++
T Consensus 14 Fdd-VIGQe~vv~~L~~aI~~g------------------------------rl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 14 FNE-LVGQNHVSRALSSALERG------------------------------RLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHH-hcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 444 899999999998888411 0125679999999999999999999987
Q ss_pred Cc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhh
Q 007362 351 VP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (606)
Q Consensus 351 ~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r 406 (606)
+. ++.+++++- .+ ...++.+.....+....++..|+||||+|+|+..
T Consensus 63 C~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~-----~~---VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~- 133 (702)
T PRK14960 63 CETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR-----TK---VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH- 133 (702)
T ss_pred CCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc-----CC---HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-
Confidence 52 223332210 11 2335555555444333346679999999999887
Q ss_pred hccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccc
Q 007362 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (606)
Q Consensus 407 ~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~ 486 (606)
.+++||+.||. ...++.||++++..
T Consensus 134 -------------A~NALLKtLEE---------------------PP~~v~FILaTtd~--------------------- 158 (702)
T PRK14960 134 -------------SFNALLKTLEE---------------------PPEHVKFLFATTDP--------------------- 158 (702)
T ss_pred -------------HHHHHHHHHhc---------------------CCCCcEEEEEECCh---------------------
Confidence 89999999984 11234555554311
Q ss_pred ccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccc
Q 007362 487 RANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLH 566 (606)
Q Consensus 487 ~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~ 566 (606)
..+.+.+++|+ .++.|.+++.+++.+.+... +...+ +.
T Consensus 159 ----------------------------~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~I-----------l~kEg--I~ 196 (702)
T PRK14960 159 ----------------------------QKLPITVISRC-LQFTLRPLAVDEITKHLGAI-----------LEKEQ--IA 196 (702)
T ss_pred ----------------------------HhhhHHHHHhh-heeeccCCCHHHHHHHHHHH-----------HHHcC--CC
Confidence 11345667777 58999999999988777642 22223 55
Q ss_pred cCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 567 FTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 567 i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
++++++..|++.+ +-+.|.+.+++.+.+
T Consensus 197 id~eAL~~IA~~S---~GdLRdALnLLDQaI 224 (702)
T PRK14960 197 ADQDAIWQIAESA---QGSLRDALSLTDQAI 224 (702)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 9999999999873 334677777776654
No 85
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8.4e-15 Score=169.23 Aligned_cols=194 Identities=23% Similarity=0.309 Sum_probs=124.1
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... + .+..+||+||+|||||++|+++|+.+
T Consensus 14 tFdd-IIGQe~Iv~~LknaI~~~--r----------------------------l~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 14 TFEQ-MVGQSHVLHALTNALTQQ--R----------------------------LHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred CHHH-hcCcHHHHHHHHHHHHhC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3444 899999999998877411 0 01346999999999999999999999
Q ss_pred CCcee-e------c-chhhhhhcC------Cccc--chHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccccc
Q 007362 350 NVPFV-I------A-DATTLTQAG------YVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (606)
Q Consensus 350 ~~~fi-~------i-~~s~l~~sg------~vG~--~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~ 413 (606)
++... . + .|..+.... +.+. .-...++.+.+........++..||||||+|+|+..
T Consensus 63 nce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-------- 134 (944)
T PRK14949 63 NCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-------- 134 (944)
T ss_pred cCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH--------
Confidence 76411 0 0 011111000 0000 001234555544433323346679999999999887
Q ss_pred CcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccc
Q 007362 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (606)
Q Consensus 414 ~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~ 493 (606)
.+++||+.||. ...+++||++++..
T Consensus 135 ------AqNALLKtLEE---------------------PP~~vrFILaTTe~---------------------------- 159 (944)
T PRK14949 135 ------SFNALLKTLEE---------------------PPEHVKFLLATTDP---------------------------- 159 (944)
T ss_pred ------HHHHHHHHHhc---------------------cCCCeEEEEECCCc----------------------------
Confidence 99999999994 12344555544321
Q ss_pred cchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHH
Q 007362 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALR 573 (606)
Q Consensus 494 ~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~ 573 (606)
..+.+.+++|+ .++.|.+++.+++.+.+... . ... .+.+++++++
T Consensus 160 ---------------------~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~i----l-------~~E--gI~~edeAL~ 204 (944)
T PRK14949 160 ---------------------QKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHI----L-------TQE--QLPFEAEALT 204 (944)
T ss_pred ---------------------hhchHHHHHhh-eEEeCCCCCHHHHHHHHHHH----H-------HHc--CCCCCHHHHH
Confidence 11456677787 68999999999988877642 1 112 3568999999
Q ss_pred HHHHccCCCCCChHHHHHHHHH
Q 007362 574 VIAKKATAKNTGARGLRAILES 595 (606)
Q Consensus 574 ~La~~a~~~~~GAR~L~~~Ie~ 595 (606)
.|++.+ +-..|...+++++
T Consensus 205 lIA~~S---~Gd~R~ALnLLdQ 223 (944)
T PRK14949 205 LLAKAA---NGSMRDALSLTDQ 223 (944)
T ss_pred HHHHHc---CCCHHHHHHHHHH
Confidence 999873 3335777676654
No 86
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=7.8e-15 Score=163.88 Aligned_cols=188 Identities=24% Similarity=0.304 Sum_probs=126.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... + .+..+||+||+|||||++|+++|+.+
T Consensus 14 ~f~d-ivGq~~v~~~L~~~~~~~--~----------------------------l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 14 CFQE-VIGQAPVVRALSNALDQQ--Y----------------------------LHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred CHHH-hcCCHHHHHHHHHHHHhC--C----------------------------CCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998888421 0 12458999999999999999999999
Q ss_pred CCc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++. ++++++.. ..+ ...++.+.+...+....++..|+||||+|+|+..
T Consensus 63 ~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas-----~~~---v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~ 134 (509)
T PRK14958 63 NCEKGVSANPCNDCENCREIDEGRFPDLFEVDAAS-----RTK---VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH 134 (509)
T ss_pred cCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccc-----cCC---HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH
Confidence 753 23333221 111 2234555554443333346679999999999887
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.+++||+.||. ...+++||++++..
T Consensus 135 --------------a~naLLk~LEe---------------------pp~~~~fIlattd~-------------------- 159 (509)
T PRK14958 135 --------------SFNALLKTLEE---------------------PPSHVKFILATTDH-------------------- 159 (509)
T ss_pred --------------HHHHHHHHHhc---------------------cCCCeEEEEEECCh--------------------
Confidence 89999999984 12334556544311
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+++|+ .++.|.+++.+++.+.+... ++..+ +
T Consensus 160 -----------------------------~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~i-----------l~~eg--i 196 (509)
T PRK14958 160 -----------------------------HKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHL-----------LKEEN--V 196 (509)
T ss_pred -----------------------------HhchHHHHHHh-hhhhcCCCCHHHHHHHHHHH-----------HHHcC--C
Confidence 11445577777 57889999998877665532 22234 4
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.+++++++.|++.+ +.+.|.+.+++++.+
T Consensus 197 ~~~~~al~~ia~~s---~GslR~al~lLdq~i 225 (509)
T PRK14958 197 EFENAALDLLARAA---NGSVRDALSLLDQSI 225 (509)
T ss_pred CCCHHHHHHHHHHc---CCcHHHHHHHHHHHH
Confidence 58899999999874 234688888877654
No 87
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.59 E-value=2.4e-14 Score=166.91 Aligned_cols=132 Identities=32% Similarity=0.477 Sum_probs=97.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+|++++++.|.+.+....+ ++......| ..++.++||+||||||||++|+++|+.++
T Consensus 177 ~~d-i~G~~~~~~~l~~~i~~~~~---~~~~~~~~g---------------i~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 177 YED-IGGLKEAKEKIREMVELPMK---HPELFEHLG---------------IEPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred HHH-hcCHHHHHHHHHHHHHHHhh---CHHHHHhcC---------------CCCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 444 89999999999998863221 111111111 11247899999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+|+.+++.++. ..|.|.. +..++.+|+.+... .++||||||||.+..++..... .....+++.|+.+|++
T Consensus 238 ~~~i~i~~~~i~-~~~~g~~-~~~l~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~---~~~~~~~~~Ll~~ld~ 308 (733)
T TIGR01243 238 AYFISINGPEIM-SKYYGES-EERLREIFKEAEEN----APSIIFIDEIDAIAPKREEVTG---EVEKRVVAQLLTLMDG 308 (733)
T ss_pred CeEEEEecHHHh-cccccHH-HHHHHHHHHHHHhc----CCcEEEeehhhhhcccccCCcc---hHHHHHHHHHHHHhhc
Confidence 999999999887 4577776 56788888876543 6789999999999877543211 1224588999999985
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.6e-14 Score=164.23 Aligned_cols=186 Identities=24% Similarity=0.327 Sum_probs=123.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... + ....+||+||+|+|||++|+++|+.+
T Consensus 14 ~f~d-ivGQe~vv~~L~~~l~~~--r----------------------------l~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 14 TFAE-VVGQEHVLTALANALDLG--R----------------------------LHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3444 899999999998888421 0 01347999999999999999999999
Q ss_pred CCce------------------------eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVPF------------------------VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~f------------------------i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++.. +.+++.. ..+ ...++++.+.....-..+...|+||||+|+|+..
T Consensus 63 ~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas-----~~~---VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~ 134 (647)
T PRK07994 63 NCETGITATPCGECDNCREIEQGRFVDLIEIDAAS-----RTK---VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH 134 (647)
T ss_pred hhccCCCCCCCCCCHHHHHHHcCCCCCceeecccc-----cCC---HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH
Confidence 7631 1122111 111 1234555544433322346679999999999887
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.+|+||+.||. ...+++||++++..
T Consensus 135 --------------a~NALLKtLEE---------------------Pp~~v~FIL~Tt~~-------------------- 159 (647)
T PRK07994 135 --------------SFNALLKTLEE---------------------PPEHVKFLLATTDP-------------------- 159 (647)
T ss_pred --------------HHHHHHHHHHc---------------------CCCCeEEEEecCCc--------------------
Confidence 99999999994 22345566654421
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+++|+ ..+.|.+++.+++...+... +...+ +
T Consensus 160 -----------------------------~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~i-----------l~~e~--i 196 (647)
T PRK07994 160 -----------------------------QKLPVTILSRC-LQFHLKALDVEQIRQQLEHI-----------LQAEQ--I 196 (647)
T ss_pred -----------------------------cccchHHHhhh-eEeeCCCCCHHHHHHHHHHH-----------HHHcC--C
Confidence 12566788886 68999999999888777642 11123 5
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILES 595 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~ 595 (606)
.+++++++.|+..+ +-..|...+++++
T Consensus 197 ~~e~~aL~~Ia~~s---~Gs~R~Al~lldq 223 (647)
T PRK07994 197 PFEPRALQLLARAA---DGSMRDALSLTDQ 223 (647)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 58889999998763 2224655555544
No 89
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=2.7e-14 Score=164.92 Aligned_cols=170 Identities=26% Similarity=0.361 Sum_probs=117.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhh-hcCCCEEEEcccchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVE-AAQQGMVYIDEVDKITK 404 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~-~a~~~ILfIDEiD~l~~ 404 (606)
.+++|+||||||||++|+++|+.++.+|+.+++.... . ..++..+..+...+. .....||||||||.+..
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------i---~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------V---KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------h---HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH
Confidence 6899999999999999999999999999888876311 1 112233332211111 12457999999999987
Q ss_pred hhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCc
Q 007362 405 KAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA 484 (606)
Q Consensus 405 ~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~ 484 (606)
. .|+.|+..++.. .+++|++++...
T Consensus 124 ~--------------qQdaLL~~lE~g-----------------------~IiLI~aTTenp------------------ 148 (725)
T PRK13341 124 A--------------QQDALLPWVENG-----------------------TITLIGATTENP------------------ 148 (725)
T ss_pred H--------------HHHHHHHHhcCc-----------------------eEEEEEecCCCh------------------
Confidence 7 899999988731 234555433210
Q ss_pred ccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcc
Q 007362 485 PVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVK 564 (606)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~ 564 (606)
...+.+.+++|. .++.|.+++.+++..|+...+.... ..+. ...
T Consensus 149 -----------------------------~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~----~~~g--~~~ 192 (725)
T PRK13341 149 -----------------------------YFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKE----RGYG--DRK 192 (725)
T ss_pred -----------------------------HhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHH----hhcC--Ccc
Confidence 012456777886 4788999999999999987543322 1111 224
Q ss_pred cccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 565 LHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 565 l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
+.++++++++|++++ .-++|.+.++|+.++.
T Consensus 193 v~I~deaL~~La~~s---~GD~R~lln~Le~a~~ 223 (725)
T PRK13341 193 VDLEPEAEKHLVDVA---NGDARSLLNALELAVE 223 (725)
T ss_pred cCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 669999999999985 3457999999998764
No 90
>PLN03025 replication factor C subunit; Provisional
Probab=99.59 E-value=1.5e-14 Score=152.85 Aligned_cols=182 Identities=23% Similarity=0.318 Sum_probs=118.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCC---
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~--- 351 (606)
|+||+++++.|..++... ...|+||+||||||||++|+++|+.+..
T Consensus 15 ~~g~~~~~~~L~~~~~~~-------------------------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~ 63 (319)
T PLN03025 15 IVGNEDAVSRLQVIARDG-------------------------------NMPNLILSGPPGTGKTTSILALAHELLGPNY 63 (319)
T ss_pred hcCcHHHHHHHHHHHhcC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 799999999887766310 0157999999999999999999999832
Q ss_pred --ceeecchhhhhhcCCcccchHHHHHHHHH---hhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHH
Q 007362 352 --PFVIADATTLTQAGYVGEDVESILYKLLA---QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (606)
Q Consensus 352 --~fi~i~~s~l~~sg~vG~~~~~~l~~lf~---~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~ 426 (606)
.++.+++++.. |.+ .++.... ............||+|||+|.++.. .|++|++
T Consensus 64 ~~~~~eln~sd~~-----~~~---~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~--------------aq~aL~~ 121 (319)
T PLN03025 64 KEAVLELNASDDR-----GID---VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG--------------AQQALRR 121 (319)
T ss_pred ccceeeecccccc-----cHH---HHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH--------------HHHHHHH
Confidence 35555554422 211 2222221 1111111124579999999999887 8999999
Q ss_pred HHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhh
Q 007362 427 MLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLES 506 (606)
Q Consensus 427 ~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~ 506 (606)
.||.. -.++ .||+++|..
T Consensus 122 ~lE~~-------------------~~~t--~~il~~n~~----------------------------------------- 139 (319)
T PLN03025 122 TMEIY-------------------SNTT--RFALACNTS----------------------------------------- 139 (319)
T ss_pred HHhcc-------------------cCCc--eEEEEeCCc-----------------------------------------
Confidence 99820 0122 234433321
Q ss_pred hcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCCh
Q 007362 507 VESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGA 586 (606)
Q Consensus 507 ~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GA 586 (606)
..+.+++.+|+ .++.|.+++.+++.+.+... ++..+ +.++++++++|++.+ +.+.
T Consensus 140 --------~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i-----------~~~eg--i~i~~~~l~~i~~~~---~gDl 194 (319)
T PLN03025 140 --------SKIIEPIQSRC-AIVRFSRLSDQEILGRLMKV-----------VEAEK--VPYVPEGLEAIIFTA---DGDM 194 (319)
T ss_pred --------cccchhHHHhh-hcccCCCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---CCCH
Confidence 12456778887 48899999999888777642 22234 458899999999873 2345
Q ss_pred HHHHHHHHHH
Q 007362 587 RGLRAILESI 596 (606)
Q Consensus 587 R~L~~~Ie~~ 596 (606)
|.+-+.+|..
T Consensus 195 R~aln~Lq~~ 204 (319)
T PLN03025 195 RQALNNLQAT 204 (319)
T ss_pred HHHHHHHHHH
Confidence 7777777743
No 91
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.59 E-value=1.7e-14 Score=167.96 Aligned_cols=191 Identities=21% Similarity=0.320 Sum_probs=134.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|+. |+|+++.++.+.+.+.+. .+.+++|+||||||||++|++||+.+
T Consensus 180 ~l~~-~igr~~ei~~~~~~L~~~-------------------------------~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 180 KIDP-LIGREDELERTIQVLCRR-------------------------------KKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCCc-ccCcHHHHHHHHHHHhcC-------------------------------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3444 899999999887666311 13789999999999999999999987
Q ss_pred ----------CCceeecchhhhhh-cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 350 ----------NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 350 ----------~~~fi~i~~s~l~~-sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
+..++.+++..+.. ..|.|+- +..++.+++.+... .+.||||||+|.+.......+.+ .
T Consensus 228 ~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~-e~~l~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~~~~-----~ 297 (731)
T TIGR02639 228 AEGKVPENLKNAKIYSLDMGSLLAGTKYRGDF-EERLKAVVSEIEKE----PNAILFIDEIHTIVGAGATSGGS-----M 297 (731)
T ss_pred HhCCCchhhcCCeEEEecHHHHhhhccccchH-HHHHHHHHHHHhcc----CCeEEEEecHHHHhccCCCCCcc-----H
Confidence 67788999887763 4577765 67788888876543 57899999999997653221111 2
Q ss_pred HHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhH
Q 007362 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~ 498 (606)
.+++.|+..|+. ..+.+|.++|..+..+.+
T Consensus 298 ~~~~~L~~~l~~-----------------------g~i~~IgaTt~~e~~~~~--------------------------- 327 (731)
T TIGR02639 298 DASNLLKPALSS-----------------------GKLRCIGSTTYEEYKNHF--------------------------- 327 (731)
T ss_pred HHHHHHHHHHhC-----------------------CCeEEEEecCHHHHHHHh---------------------------
Confidence 367778887762 234566666643221111
Q ss_pred hHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 499 ~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
..++.|.+||+ .|.+.+++.++..+|++..++. +.. ...+.+++++++++++.
T Consensus 328 -----------------~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~----~e~-----~~~v~i~~~al~~~~~l 380 (731)
T TIGR02639 328 -----------------EKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEK----YEE-----FHHVKYSDEALEAAVEL 380 (731)
T ss_pred -----------------hhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHH----HHh-----ccCcccCHHHHHHHHHh
Confidence 14678899996 7899999999999999864322 221 22456888888888765
Q ss_pred c
Q 007362 579 A 579 (606)
Q Consensus 579 a 579 (606)
+
T Consensus 381 s 381 (731)
T TIGR02639 381 S 381 (731)
T ss_pred h
Confidence 3
No 92
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.2e-15 Score=153.05 Aligned_cols=157 Identities=24% Similarity=0.351 Sum_probs=122.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC---------CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCC--E
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN---------VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQG--M 393 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~---------~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~--I 393 (606)
.+-|||+||||||||+|||+||+.+- ..++++++..+. ++|.+++ ++.+.++|++....+.. +++ .
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-SKWFsES-gKlV~kmF~kI~ELv~d-~~~lVf 253 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-SKWFSES-GKLVAKMFQKIQELVED-RGNLVF 253 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-HHHHhhh-hhHHHHHHHHHHHHHhC-CCcEEE
Confidence 36799999999999999999999883 367899999988 6799998 89999999988766544 333 5
Q ss_pred EEEcccchhhhhhhccccccCcch-hHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHH
Q 007362 394 VYIDEVDKITKKAESLNISRDVSG-EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~-~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~ 472 (606)
++|||++.+...|.+...++..++ -++.|+||..||. .-...|+++.+|+|..+
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDr-------------------lK~~~NvliL~TSNl~~------ 308 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDR-------------------LKRYPNVLILATSNLTD------ 308 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHH-------------------hccCCCEEEEeccchHH------
Confidence 678999999998876655555554 5899999999983 11345677777776421
Q ss_pred hhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHH
Q 007362 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGK 552 (606)
Q Consensus 473 ~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k 552 (606)
.++-+|++|-|.+..+.+++.+.+.+|++-.+.+|..
T Consensus 309 -------------------------------------------siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~ 345 (423)
T KOG0744|consen 309 -------------------------------------------SIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELIS 345 (423)
T ss_pred -------------------------------------------HHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHh
Confidence 2456788888888888999998888888877666653
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.7e-14 Score=168.52 Aligned_cols=193 Identities=24% Similarity=0.282 Sum_probs=122.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ ||||+++++.|..++... + ....+||+||+|||||++|++||+.+
T Consensus 13 ~f~e-iiGqe~v~~~L~~~i~~~--r----------------------------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 13 TFAE-VIGQEHVTEPLSTALDSG--R----------------------------INHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred CHHH-hcCcHHHHHHHHHHHHhC--C----------------------------CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998888421 0 01348999999999999999999999
Q ss_pred CCceee--------cchhhhh-------------hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhc
Q 007362 350 NVPFVI--------ADATTLT-------------QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAES 408 (606)
Q Consensus 350 ~~~fi~--------i~~s~l~-------------~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~ 408 (606)
++.--. -+|..+. .....+ ...++++.+...+........||||||+|+|+..
T Consensus 62 ~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~---Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~--- 135 (824)
T PRK07764 62 NCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGG---VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ--- 135 (824)
T ss_pred CcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCC---HHHHHHHHHHHHhchhcCCceEEEEechhhcCHH---
Confidence 752110 0011110 000011 1234444433332223346789999999999987
Q ss_pred cccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccc
Q 007362 409 LNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRA 488 (606)
Q Consensus 409 ~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~ 488 (606)
.+|.||++||. ...+++||++++.. ++
T Consensus 136 -----------a~NaLLK~LEE---------------------pP~~~~fIl~tt~~--~k------------------- 162 (824)
T PRK07764 136 -----------GFNALLKIVEE---------------------PPEHLKFIFATTEP--DK------------------- 162 (824)
T ss_pred -----------HHHHHHHHHhC---------------------CCCCeEEEEEeCCh--hh-------------------
Confidence 99999999984 22355666654321 11
Q ss_pred ccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccC
Q 007362 489 NMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFT 568 (606)
Q Consensus 489 ~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~ 568 (606)
+.+.+.+|+ .++.|..++.+++.++|.+. ++..+ +.++
T Consensus 163 ----------------------------Ll~TIrSRc-~~v~F~~l~~~~l~~~L~~i-----------l~~EG--v~id 200 (824)
T PRK07764 163 ----------------------------VIGTIRSRT-HHYPFRLVPPEVMRGYLERI-----------CAQEG--VPVE 200 (824)
T ss_pred ----------------------------hhHHHHhhe-eEEEeeCCCHHHHHHHHHHH-----------HHHcC--CCCC
Confidence 334455665 58899999999888777642 22234 4588
Q ss_pred HHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 569 EKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 569 e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
++++.+|++.. +-..|.+.+.|++++
T Consensus 201 ~eal~lLa~~s---gGdlR~Al~eLEKLi 226 (824)
T PRK07764 201 PGVLPLVIRAG---GGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 89999888874 223577777777655
No 94
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=3.8e-14 Score=156.87 Aligned_cols=189 Identities=22% Similarity=0.314 Sum_probs=126.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... ..+.++||+||+||||||+|+++|+.+
T Consensus 11 ~f~d-liGQe~vv~~L~~a~~~~------------------------------ri~ha~Lf~Gp~G~GKTT~ArilAk~L 59 (491)
T PRK14964 11 SFKD-LVGQDVLVRILRNAFTLN------------------------------KIPQSILLVGASGVGKTTCARIISLCL 59 (491)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCccHHHHHHHHHHHH
Confidence 3444 899999999998777411 012579999999999999999999987
Q ss_pred CCc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++. ++++++++ ..|. ..++.+.+.+...-..++..|+||||+|+++..
T Consensus 60 nC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas-----~~~v---ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~ 131 (491)
T PRK14964 60 NCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS-----NTSV---DDIKVILENSCYLPISSKFKVYIIDEVHMLSNS 131 (491)
T ss_pred cCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc-----CCCH---HHHHHHHHHHHhccccCCceEEEEeChHhCCHH
Confidence 542 23333321 1222 235555554443333356789999999999877
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.+++||+.||. ....++||++++. +.
T Consensus 132 --------------A~NaLLK~LEe---------------------Pp~~v~fIlatte--~~----------------- 157 (491)
T PRK14964 132 --------------AFNALLKTLEE---------------------PAPHVKFILATTE--VK----------------- 157 (491)
T ss_pred --------------HHHHHHHHHhC---------------------CCCCeEEEEEeCC--hH-----------------
Confidence 89999999984 1133455554431 11
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
.+.+.+++|+ ..+.|.+++.+++.+.+... +...+ +
T Consensus 158 ------------------------------Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~i-----------a~~Eg--i 193 (491)
T PRK14964 158 ------------------------------KIPVTIISRC-QRFDLQKIPTDKLVEHLVDI-----------AKKEN--I 193 (491)
T ss_pred ------------------------------HHHHHHHHhh-eeeecccccHHHHHHHHHHH-----------HHHcC--C
Confidence 1334455666 47899999999887777642 12233 4
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
.+++++++.|++.+ +.+.|.+.+.+++.+.
T Consensus 194 ~i~~eAL~lIa~~s---~GslR~alslLdqli~ 223 (491)
T PRK14964 194 EHDEESLKLIAENS---SGSMRNALFLLEQAAI 223 (491)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 58999999999874 3356777777776653
No 95
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.57 E-value=3.1e-14 Score=157.40 Aligned_cols=210 Identities=20% Similarity=0.325 Sum_probs=146.2
Q ss_pred CCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHh
Q 007362 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (606)
Q Consensus 305 ~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~ 381 (606)
.|.++.+..+.+....+......++|.|++|||||++|+++++.. +.+|+.++|..+.+ ...-..+|..
T Consensus 141 ig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~--------~~~~~~lfg~ 212 (469)
T PRK10923 141 IGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK--------DLIESELFGH 212 (469)
T ss_pred eecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH--------HHHHHHhcCC
Confidence 455566666666666666777899999999999999999999987 46999999987632 1111223322
Q ss_pred h-----------hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee-eecCCCCcccCCCCCcE
Q 007362 382 A-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSI 449 (606)
Q Consensus 382 a-----------~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~-~~i~~~g~~~~~~~~~v 449 (606)
. .+.+..+.+++||||||+.++.. +|..|+++|+... ..+.+. ..+
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~--------~~~ 270 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD--------------VQTRLLRVLADGQFYRVGGY--------APV 270 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH--------------HHHHHHHHHhcCcEEeCCCC--------CeE
Confidence 1 22344567899999999999988 9999999998433 222111 111
Q ss_pred EEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-E
Q 007362 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-L 528 (606)
Q Consensus 450 ~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-i 528 (606)
..++-+|++++. ++++.+.++ .|.++|+.||.. .
T Consensus 271 ---~~~~rii~~~~~-~l~~~~~~~-----------------------------------------~~~~~L~~~l~~~~ 305 (469)
T PRK10923 271 ---KVDVRIIAATHQ-NLEQRVQEG-----------------------------------------KFREDLFHRLNVIR 305 (469)
T ss_pred ---EeeEEEEEeCCC-CHHHHHHcC-----------------------------------------CchHHHHHHhccee
Confidence 124556666542 344443322 367788888854 7
Q ss_pred EEcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcc-cccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 529 VSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVK-LHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 529 I~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~-l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
|.++||.+ +|+..++..++..+..+ .+.. ..+++++++.|..+.|.+|. |+|+++|++++.
T Consensus 306 i~~PpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~~a~~~L~~~~wpgNv--~eL~~~i~~~~~ 369 (469)
T PRK10923 306 VHLPPLRERREDIPRLARHFLQVAARE-------LGVEAKLLHPETEAALTRLAWPGNV--RQLENTCRWLTV 369 (469)
T ss_pred ecCCCcccchhhHHHHHHHHHHHHHHH-------cCCCCCCcCHHHHHHHHhCCCCChH--HHHHHHHHHHHH
Confidence 88899886 78888887665444322 2323 35999999999999999998 999999998875
No 96
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.56 E-value=2e-15 Score=149.10 Aligned_cols=181 Identities=20% Similarity=0.305 Sum_probs=80.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCC---
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV--- 351 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~--- 351 (606)
|+||+.+|++|..+... ..|+||+||||||||++|+.++..+--
T Consensus 5 I~GQe~aKrAL~iAAaG---------------------------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~ 51 (206)
T PF01078_consen 5 IVGQEEAKRALEIAAAG---------------------------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTE 51 (206)
T ss_dssp SSSTHHHHHHHHHHHHC---------------------------------C--EEEES-CCCTHHHHHHHHHHCS--CCE
T ss_pred hcCcHHHHHHHHHHHcC---------------------------------CCCeEEECCCCCCHHHHHHHHHHhCCCCch
Confidence 89999999999888741 279999999999999999999987721
Q ss_pred -ceeecchhh-hhh----c------CCcccchHHHHHHHHH----hhhhhhhhcCCCEEEEcccchhhhhhhccccccCc
Q 007362 352 -PFVIADATT-LTQ----A------GYVGEDVESILYKLLA----QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDV 415 (606)
Q Consensus 352 -~fi~i~~s~-l~~----s------g~vG~~~~~~l~~lf~----~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~ 415 (606)
..+++..-. +.. . -|.--........++. -.++.+..++++||||||+..+.+.
T Consensus 52 ~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~---------- 121 (206)
T PF01078_consen 52 EEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS---------- 121 (206)
T ss_dssp ECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH----------
T ss_pred HHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH----------
Confidence 111111000 000 0 0000000001112221 1345678899999999999998877
Q ss_pred chhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCc--ccccccccc
Q 007362 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGA--PVRANMRAG 493 (606)
Q Consensus 416 s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~--~~~~~~~~~ 493 (606)
+++.|++.||.+.+.+...+.....+ .++++|+|.|.-.=- +|+. ..+
T Consensus 122 ----vld~Lr~ple~g~v~i~R~~~~~~~P--------a~f~lv~a~NPcpCG------------~~~~~~~~C------ 171 (206)
T PF01078_consen 122 ----VLDALRQPLEDGEVTISRAGGSVTYP--------ARFLLVAAMNPCPCG------------YYGDPDNRC------ 171 (206)
T ss_dssp ----HHHHHHHHHHHSBEEEEETTEEEEEB----------EEEEEEE-S-------------------------------
T ss_pred ----HHHHHHHHHHCCeEEEEECCceEEEe--------cccEEEEEecccccc------------ccccccccc------
Confidence 99999999997777776665444333 345555554432100 0000 000
Q ss_pred cchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHH
Q 007362 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQ 538 (606)
Q Consensus 494 ~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~ee 538 (606)
..+.....+++.+ +.-+|++|||..+.+++++.+|
T Consensus 172 ~Cs~~~~~~Y~~r----------lsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 172 RCSPRQIRRYQSR----------LSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ---------------------------------------------
T ss_pred ccccccccccccc----------ccccccccccccccccccccCC
Confidence 0122223334433 6789999999999998887653
No 97
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.5e-14 Score=148.92 Aligned_cols=190 Identities=23% Similarity=0.334 Sum_probs=134.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++||||||||||||++|+-||+..|..|..+...++... |......+-++|+=+.. ..++-+|||||+|.+..+
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl---G~qaVTkiH~lFDWakk---S~rGLllFIDEADAFLce 458 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL---GAQAVTKIHKLFDWAKK---SRRGLLLFIDEADAFLCE 458 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc---chHHHHHHHHHHHHHhh---cccceEEEehhhHHHHHH
Confidence 899999999999999999999999999998888887644 33323345566654432 235679999999999999
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
|.+..++.+ ...+|-.+|-. .| -..+++++++++|-.
T Consensus 459 RnktymSEa-----qRsaLNAlLfR-------TG-----------dqSrdivLvlAtNrp-------------------- 495 (630)
T KOG0742|consen 459 RNKTYMSEA-----QRSALNALLFR-------TG-----------DQSRDIVLVLATNRP-------------------- 495 (630)
T ss_pred hchhhhcHH-----HHHHHHHHHHH-------hc-----------ccccceEEEeccCCc--------------------
Confidence 888776655 55555555431 11 024667778877632
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHH---------HHHH
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGK---------QYKR 556 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k---------~~~~ 556 (606)
..|+-.+-+|||.+|.|+-.-+++.++|+..|++..+. .+..
T Consensus 496 -----------------------------gdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~ 546 (630)
T KOG0742|consen 496 -----------------------------GDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSH 546 (630)
T ss_pred -----------------------------cchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhH
Confidence 11455667899999999999999999999999877662 2334
Q ss_pred HHhcCCcccccCH----HHHHHHHHccCCCCCChHHHHHHHHH
Q 007362 557 LFSMNNVKLHFTE----KALRVIAKKATAKNTGARGLRAILES 595 (606)
Q Consensus 557 ~~~~~~i~l~i~e----~al~~La~~a~~~~~GAR~L~~~Ie~ 595 (606)
+|+...-+|.+.. ..+...+++ ..++..|+|.+++..
T Consensus 547 lfkk~sQ~i~l~~~~t~~~~~EaAkk--TeGfSGREiakLva~ 587 (630)
T KOG0742|consen 547 LFKKESQRIKLAGFDTGRKCSEAAKK--TEGFSGREIAKLVAS 587 (630)
T ss_pred HHhhhhheeeeccchHHHHHHHHHHh--ccCCcHHHHHHHHHH
Confidence 4444444444444 445555554 677889999998864
No 98
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=1.5e-14 Score=130.97 Aligned_cols=95 Identities=33% Similarity=0.586 Sum_probs=74.8
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAE 407 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~ 407 (606)
|||+||||||||++|+.+|+.++.+++.+++.++. ..+.+.. ...+..++..+... +.++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~-~~~~~~~-~~~i~~~~~~~~~~---~~~~vl~iDe~d~l~~~~- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELI-SSYAGDS-EQKIRDFFKKAKKS---AKPCVLFIDEIDKLFPKS- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHH-TSSTTHH-HHHHHHHHHHHHHT---STSEEEEEETGGGTSHHC-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccc-ccccccc-cccccccccccccc---ccceeeeeccchhccccc-
Confidence 69999999999999999999999999999999988 3355555 66777888776543 137999999999998874
Q ss_pred ccccccCcchhHHHHHHHHHHhc
Q 007362 408 SLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 408 ~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
..........+++.|+..|+.
T Consensus 75 --~~~~~~~~~~~~~~L~~~l~~ 95 (132)
T PF00004_consen 75 --QPSSSSFEQRLLNQLLSLLDN 95 (132)
T ss_dssp --STSSSHHHHHHHHHHHHHHHT
T ss_pred --ccccccccccccceeeecccc
Confidence 112222335688999999984
No 99
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=6e-14 Score=156.26 Aligned_cols=193 Identities=28% Similarity=0.367 Sum_probs=126.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
++||+++++.|..++... . .+.++||+||+|||||++|+++|+.+++...
T Consensus 23 liGq~~vv~~L~~ai~~~--------r----------------------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~ 72 (507)
T PRK06645 23 LQGQEVLVKVLSYTILND--------R----------------------LAGGYLLTGIRGVGKTTSARIIAKAVNCSAL 72 (507)
T ss_pred hcCcHHHHHHHHHHHHcC--------C----------------------CCceEEEECCCCCCHHHHHHHHHHHhcCccc
Confidence 899999999998877411 0 1267999999999999999999999975321
Q ss_pred e------------cchhhhhhc---CCc-----ccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccC
Q 007362 355 I------------ADATTLTQA---GYV-----GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (606)
Q Consensus 355 ~------------i~~s~l~~s---g~v-----G~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~ 414 (606)
. .+|..+... .+. ...-...++.+++.+......++..||||||+|+++..
T Consensus 73 ~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~--------- 143 (507)
T PRK06645 73 ITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG--------- 143 (507)
T ss_pred cccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH---------
Confidence 0 011111100 000 00012345566655543333356789999999999876
Q ss_pred cchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccccccc
Q 007362 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGV 494 (606)
Q Consensus 415 ~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~ 494 (606)
.++.|++.||. ...+++||++++.. .
T Consensus 144 -----a~naLLk~LEe---------------------pp~~~vfI~aTte~--~-------------------------- 169 (507)
T PRK06645 144 -----AFNALLKTLEE---------------------PPPHIIFIFATTEV--Q-------------------------- 169 (507)
T ss_pred -----HHHHHHHHHhh---------------------cCCCEEEEEEeCCh--H--------------------------
Confidence 89999999983 12345566544311 0
Q ss_pred chhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHH
Q 007362 495 TDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRV 574 (606)
Q Consensus 495 ~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~ 574 (606)
.+.+.+.+|+ ..+.|.+++.+++.+++... ++..+ +.++++++++
T Consensus 170 ---------------------kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i-----------~~~eg--i~ie~eAL~~ 214 (507)
T PRK06645 170 ---------------------KIPATIISRC-QRYDLRRLSFEEIFKLLEYI-----------TKQEN--LKTDIEALRI 214 (507)
T ss_pred ---------------------HhhHHHHhcc-eEEEccCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHH
Confidence 1345667777 57889999999988887742 11223 5589999999
Q ss_pred HHHccCCCCCChHHHHHHHHHHHH
Q 007362 575 IAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 575 La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
|++.+ +.+.|.+-+.+++.+.
T Consensus 215 Ia~~s---~GslR~al~~Ldkai~ 235 (507)
T PRK06645 215 IAYKS---EGSARDAVSILDQAAS 235 (507)
T ss_pred HHHHc---CCCHHHHHHHHHHHHH
Confidence 99863 2356888888877643
No 100
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.6e-14 Score=157.25 Aligned_cols=187 Identities=22% Similarity=0.310 Sum_probs=124.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCc-EEEEcCCCCHHHHHHHHHHHH
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSN-VLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~-vLL~GPpGTGKT~lAralA~~ 348 (606)
.|++ |+||+++++.|..++... + ..| +||+||+|||||++|+++|+.
T Consensus 11 ~f~e-ivGq~~i~~~L~~~i~~~--r-----------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 11 TFAE-VVGQEHVTEPLSSALDAG--R-----------------------------INHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred cHHH-hcCcHHHHHHHHHHHHcC--C-----------------------------CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444 899999999998888411 0 144 799999999999999999999
Q ss_pred hCCce--------------------------eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 349 VNVPF--------------------------VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 349 l~~~f--------------------------i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
+++.. +.+++.. ..| -..++++.+.....-..+...|+||||+|++
T Consensus 59 l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas-----~~g---vd~iRel~~~~~~~P~~~~~KVvIIDEah~L 130 (584)
T PRK14952 59 LNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAAS-----HGG---VDDTRELRDRAFYAPAQSRYRIFIVDEAHMV 130 (584)
T ss_pred hccccCCCCCcccccHHHHHhhcccCCCceEEEecccc-----ccC---HHHHHHHHHHHHhhhhcCCceEEEEECCCcC
Confidence 87421 1111111 112 1234444444333222346789999999999
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf 482 (606)
+.. .+++||+.||. ...+++||++++..
T Consensus 131 t~~--------------A~NALLK~LEE---------------------pp~~~~fIL~tte~----------------- 158 (584)
T PRK14952 131 TTA--------------GFNALLKIVEE---------------------PPEHLIFIFATTEP----------------- 158 (584)
T ss_pred CHH--------------HHHHHHHHHhc---------------------CCCCeEEEEEeCCh-----------------
Confidence 887 99999999984 23456677655421
Q ss_pred CcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCC
Q 007362 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNN 562 (606)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~ 562 (606)
..+.+.+++|+ ..+.|.+++.+++.+.+... ++..+
T Consensus 159 --------------------------------~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i-----------~~~eg 194 (584)
T PRK14952 159 --------------------------------EKVLPTIRSRT-HHYPFRLLPPRTMRALIARI-----------CEQEG 194 (584)
T ss_pred --------------------------------HhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHH-----------HHHcC
Confidence 12456677775 58999999998877776532 22224
Q ss_pred cccccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 563 VKLHFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 563 i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
+.++++++.+|++.+ +.+.|.+.+.+++++
T Consensus 195 --i~i~~~al~~Ia~~s---~GdlR~aln~Ldql~ 224 (584)
T PRK14952 195 --VVVDDAVYPLVIRAG---GGSPRDTLSVLDQLL 224 (584)
T ss_pred --CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 458899999998863 234677777777654
No 101
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=4.6e-14 Score=160.07 Aligned_cols=187 Identities=24% Similarity=0.353 Sum_probs=122.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... + .+..+||+||+|||||++|+++|+.+
T Consensus 14 ~f~d-viGQe~vv~~L~~~l~~~--r----------------------------l~ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 14 SFSE-MVGQEHVVQALTNALTQQ--R----------------------------LHHAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455 789999999998888521 0 02457999999999999999999998
Q ss_pred CCc-----------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 350 NVP-----------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 350 ~~~-----------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
++. ++.+++.. ..+ ...++++.+.....-..+...|+||||+|
T Consensus 63 nC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas-----~~~---Vd~iReli~~~~~~p~~g~~KV~IIDEvh 134 (618)
T PRK14951 63 NCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS-----NRG---VDEVQQLLEQAVYKPVQGRFKVFMIDEVH 134 (618)
T ss_pred cCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc-----ccC---HHHHHHHHHHHHhCcccCCceEEEEEChh
Confidence 752 11222111 111 12345555544333223456799999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
+|+.. .+|.||+.||. ...+++||++++..
T Consensus 135 ~Ls~~--------------a~NaLLKtLEE---------------------PP~~~~fIL~Ttd~--------------- 164 (618)
T PRK14951 135 MLTNT--------------AFNAMLKTLEE---------------------PPEYLKFVLATTDP--------------- 164 (618)
T ss_pred hCCHH--------------HHHHHHHhccc---------------------CCCCeEEEEEECCc---------------
Confidence 99887 89999999984 12344555544311
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
..+.+.+++|+ .++.|.+++.+++.+.+... +..
T Consensus 165 ----------------------------------~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i-----------~~~ 198 (618)
T PRK14951 165 ----------------------------------QKVPVTVLSRC-LQFNLRPMAPETVLEHLTQV-----------LAA 198 (618)
T ss_pred ----------------------------------hhhhHHHHHhc-eeeecCCCCHHHHHHHHHHH-----------HHH
Confidence 01344577777 68999999999888777642 122
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESI 596 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~ 596 (606)
.+ +.++++++++|++.+ +-+.|.+.+++++.
T Consensus 199 eg--i~ie~~AL~~La~~s---~GslR~al~lLdq~ 229 (618)
T PRK14951 199 EN--VPAEPQALRLLARAA---RGSMRDALSLTDQA 229 (618)
T ss_pred cC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 34 458899999999863 23456666666543
No 102
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=8.5e-14 Score=149.72 Aligned_cols=194 Identities=24% Similarity=0.295 Sum_probs=121.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ |+||+++++.|..++... + .+..+||+||+|||||++|+++|+.+
T Consensus 14 ~~~~-iiGq~~~~~~l~~~~~~~--~----------------------------~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 14 YFRD-IIGQKHIVTAISNGLSLG--R----------------------------IHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred chhh-ccChHHHHHHHHHHHHcC--C----------------------------CCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998877411 0 02447999999999999999999998
Q ss_pred CCceee--------cchhhhhhcC---C---cc---cchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccc
Q 007362 350 NVPFVI--------ADATTLTQAG---Y---VG---EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (606)
Q Consensus 350 ~~~fi~--------i~~s~l~~sg---~---vG---~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~ 412 (606)
++.... .+|..+.... + .+ .. ...++.+.+........+...|+||||+|++...
T Consensus 63 ~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~~~~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~------- 134 (363)
T PRK14961 63 NCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTK-VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH------- 134 (363)
T ss_pred cCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccccCC-HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH-------
Confidence 642210 0111111000 0 00 11 1234444443322211234579999999999876
Q ss_pred cCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccccc
Q 007362 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (606)
Q Consensus 413 ~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~ 492 (606)
.+++||+.||. ...++.||++++.. +
T Consensus 135 -------a~naLLk~lEe---------------------~~~~~~fIl~t~~~--~------------------------ 160 (363)
T PRK14961 135 -------SFNALLKTLEE---------------------PPQHIKFILATTDV--E------------------------ 160 (363)
T ss_pred -------HHHHHHHHHhc---------------------CCCCeEEEEEcCCh--H------------------------
Confidence 89999999984 11234455544311 0
Q ss_pred ccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHH
Q 007362 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKAL 572 (606)
Q Consensus 493 ~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al 572 (606)
.+.+.+.+|+ ..+.|.+++.+++.+++... ++..+ +.++++++
T Consensus 161 -----------------------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~-----------~~~~g--~~i~~~al 203 (363)
T PRK14961 161 -----------------------KIPKTILSRC-LQFKLKIISEEKIFNFLKYI-----------LIKES--IDTDEYAL 203 (363)
T ss_pred -----------------------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHH
Confidence 1445667787 57899999999988877642 11223 55899999
Q ss_pred HHHHHccCCCCCChHHHHHHHHHH
Q 007362 573 RVIAKKATAKNTGARGLRAILESI 596 (606)
Q Consensus 573 ~~La~~a~~~~~GAR~L~~~Ie~~ 596 (606)
++|++.+ +-+.|.+.+.+++.
T Consensus 204 ~~ia~~s---~G~~R~al~~l~~~ 224 (363)
T PRK14961 204 KLIAYHA---HGSMRDALNLLEHA 224 (363)
T ss_pred HHHHHHc---CCCHHHHHHHHHHH
Confidence 9999874 23367777777665
No 103
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=7e-14 Score=156.72 Aligned_cols=188 Identities=24% Similarity=0.327 Sum_probs=123.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... + ....+||+||+|||||++|+++|+.+
T Consensus 14 ~f~d-iiGq~~~v~~L~~~i~~~--r----------------------------l~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 14 SFAE-VAGQQHALNSLVHALETQ--K----------------------------VHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred cHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998877411 0 01448999999999999999999988
Q ss_pred CCc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++. ++.+++. ...|.+ .++.+.+........+...|+||||+|+++..
T Consensus 63 ~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaa-----s~~gvd---~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~ 134 (546)
T PRK14957 63 NCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAA-----SRTGVE---ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ 134 (546)
T ss_pred CCCCCCCCCCCcccHHHHHHhcCCCCceEEeecc-----cccCHH---HHHHHHHHHHhhhhcCCcEEEEEechhhccHH
Confidence 641 1112211 112222 23344443332222346679999999999887
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.++.||+.||. ....++||++++..
T Consensus 135 --------------a~naLLK~LEe---------------------pp~~v~fIL~Ttd~-------------------- 159 (546)
T PRK14957 135 --------------SFNALLKTLEE---------------------PPEYVKFILATTDY-------------------- 159 (546)
T ss_pred --------------HHHHHHHHHhc---------------------CCCCceEEEEECCh--------------------
Confidence 99999999994 11234455443310
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+++|+ .++.|.+++.+++.+.+... +...+ +
T Consensus 160 -----------------------------~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~i-----------l~~eg--i 196 (546)
T PRK14957 160 -----------------------------HKIPVTILSRC-IQLHLKHISQADIKDQLKII-----------LAKEN--I 196 (546)
T ss_pred -----------------------------hhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHH-----------HHHcC--C
Confidence 11345577887 68999999999988776642 11223 5
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.++++++++|++.+ +-+.|.+-+.+++++
T Consensus 197 ~~e~~Al~~Ia~~s---~GdlR~alnlLek~i 225 (546)
T PRK14957 197 NSDEQSLEYIAYHA---KGSLRDALSLLDQAI 225 (546)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 68999999999874 334687777777654
No 104
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.55 E-value=2.7e-14 Score=157.94 Aligned_cols=193 Identities=26% Similarity=0.366 Sum_probs=136.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+||+++++.|..++.+. ++ ...+||.||-|||||++||.+|+.+|
T Consensus 15 F~e-vvGQe~v~~~L~nal~~~--ri----------------------------~hAYlfsG~RGvGKTt~Ari~AkalN 63 (515)
T COG2812 15 FDD-VVGQEHVVKTLSNALENG--RI----------------------------AHAYLFSGPRGVGKTTIARILAKALN 63 (515)
T ss_pred HHH-hcccHHHHHHHHHHHHhC--cc----------------------------hhhhhhcCCCCcCchhHHHHHHHHhc
Confidence 444 799999999999999632 22 15699999999999999999999997
Q ss_pred Cce-------ee------cc------hhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccc
Q 007362 351 VPF-------VI------AD------ATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (606)
Q Consensus 351 ~~f-------i~------i~------~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~ 411 (606)
+.- .. ++ ..++....-.|. ..++.+.+...+.....+..|++|||+|+|+..
T Consensus 64 C~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gV---ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~------ 134 (515)
T COG2812 64 CENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGV---DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ------ 134 (515)
T ss_pred CCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccCh---HHHHHHHHHhccCCccccceEEEEecHHhhhHH------
Confidence 642 00 00 001111111222 345666666666556677889999999999988
Q ss_pred ccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccc
Q 007362 412 SRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMR 491 (606)
Q Consensus 412 ~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~ 491 (606)
..|+||+.||+ ...+++||++++-.
T Consensus 135 --------afNALLKTLEE---------------------PP~hV~FIlATTe~-------------------------- 159 (515)
T COG2812 135 --------AFNALLKTLEE---------------------PPSHVKFILATTEP-------------------------- 159 (515)
T ss_pred --------HHHHHhccccc---------------------CccCeEEEEecCCc--------------------------
Confidence 99999999985 44677888876621
Q ss_pred cccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH
Q 007362 492 AGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA 571 (606)
Q Consensus 492 ~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a 571 (606)
..+++..++|+ ..+.|..++.+++...+... +. +..+.+++++
T Consensus 160 -----------------------~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i-----------~~--~E~I~~e~~a 202 (515)
T COG2812 160 -----------------------QKIPNTILSRC-QRFDFKRLDLEEIAKHLAAI-----------LD--KEGINIEEDA 202 (515)
T ss_pred -----------------------CcCchhhhhcc-ccccccCCCHHHHHHHHHHH-----------HH--hcCCccCHHH
Confidence 23667788888 47889999998876666532 22 2346699999
Q ss_pred HHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 572 LRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 572 l~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
+..|++.+ +-+.|+.-+++.+.+.
T Consensus 203 L~~ia~~a---~Gs~RDalslLDq~i~ 226 (515)
T COG2812 203 LSLIARAA---EGSLRDALSLLDQAIA 226 (515)
T ss_pred HHHHHHHc---CCChhhHHHHHHHHHH
Confidence 99999873 3446777777765543
No 105
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=4.2e-14 Score=160.58 Aligned_cols=196 Identities=22% Similarity=0.325 Sum_probs=126.2
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... ..+..+||+||+|||||++|+++|+.+
T Consensus 14 tFdd-IIGQe~vv~~L~~ai~~~------------------------------rl~Ha~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 14 TFAD-LVGQEHVVKALQNALDEG------------------------------RLHHAYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred CHHH-HcCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444 899999999998888411 012568999999999999999999998
Q ss_pred CCceee--c------chhhhhhcCC---------cccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccc
Q 007362 350 NVPFVI--A------DATTLTQAGY---------VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNIS 412 (606)
Q Consensus 350 ~~~fi~--i------~~s~l~~sg~---------vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~ 412 (606)
++.-.. . .|..+....+ .... ...++.+++.....-..++..||||||+|++...
T Consensus 63 nC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~g-Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~------- 134 (709)
T PRK08691 63 NCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTG-IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS------- 134 (709)
T ss_pred cccCCCCCCCCcccHHHHHHhccCccceEEEeccccCC-HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH-------
Confidence 653210 0 0111110000 0111 2345566554433222346679999999998876
Q ss_pred cCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccccc
Q 007362 413 RDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRA 492 (606)
Q Consensus 413 ~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~ 492 (606)
.++.||+.||. ...+++||++++..
T Consensus 135 -------A~NALLKtLEE---------------------Pp~~v~fILaTtd~--------------------------- 159 (709)
T PRK08691 135 -------AFNAMLKTLEE---------------------PPEHVKFILATTDP--------------------------- 159 (709)
T ss_pred -------HHHHHHHHHHh---------------------CCCCcEEEEEeCCc---------------------------
Confidence 89999999984 11234555554421
Q ss_pred ccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHH
Q 007362 493 GVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKAL 572 (606)
Q Consensus 493 ~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al 572 (606)
..+.+.+++|+ ..+.|.+++.+++.+.+... +...+ +.++++++
T Consensus 160 ----------------------~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~I-----------l~kEg--i~id~eAL 203 (709)
T PRK08691 160 ----------------------HKVPVTVLSRC-LQFVLRNMTAQQVADHLAHV-----------LDSEK--IAYEPPAL 203 (709)
T ss_pred ----------------------cccchHHHHHH-hhhhcCCCCHHHHHHHHHHH-----------HHHcC--CCcCHHHH
Confidence 11445566777 57888999999887777642 22234 55899999
Q ss_pred HHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 573 RVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 573 ~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
+.|++.+ +-+.|.+.+++++.+.
T Consensus 204 ~~Ia~~A---~GslRdAlnLLDqaia 226 (709)
T PRK08691 204 QLLGRAA---AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHH
Confidence 9999874 2346888888876554
No 106
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.54 E-value=8.8e-14 Score=152.70 Aligned_cols=211 Identities=20% Similarity=0.360 Sum_probs=145.0
Q ss_pred CCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHh
Q 007362 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (606)
Q Consensus 305 ~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~ 381 (606)
.+.++.++.+.+....+.....+++|+|++||||+++|++++... +.+|+.++|..+.+. ..-..+|..
T Consensus 142 ig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~--------~~~~~lfg~ 213 (445)
T TIGR02915 142 ITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPEN--------LLESELFGY 213 (445)
T ss_pred eecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChH--------HHHHHhcCC
Confidence 455666777777776666677899999999999999999999876 468999999875421 111122221
Q ss_pred -----------hhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee-ecCCCCcccCCCCCcE
Q 007362 382 -----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV-NVPEKGARKHPRGDSI 449 (606)
Q Consensus 382 -----------a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~-~i~~~g~~~~~~~~~v 449 (606)
..+.+..+.+++||||||+.|+.. +|..|+++++...+ .+... ..+
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~--------------~q~~l~~~l~~~~~~~~~~~--------~~~ 271 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN--------------LQAKLLRFLQERVIERLGGR--------EEI 271 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHH--------------HHHHHHHHHhhCeEEeCCCC--------cee
Confidence 122344578899999999999988 99999999984432 21111 111
Q ss_pred EEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-E
Q 007362 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-L 528 (606)
Q Consensus 450 ~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-i 528 (606)
..++-+|++++ .++++.+.++. |.++|+.|+.. .
T Consensus 272 ---~~~~rii~~~~-~~l~~~~~~~~-----------------------------------------~~~~L~~~l~~~~ 306 (445)
T TIGR02915 272 ---PVDVRIVCATN-QDLKRMIAEGT-----------------------------------------FREDLFYRIAEIS 306 (445)
T ss_pred ---eeceEEEEecC-CCHHHHHHcCC-----------------------------------------ccHHHHHHhccce
Confidence 12455666554 34444443322 66677777765 6
Q ss_pred EEcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 529 VSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 529 I~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
|.+++|.+ +|+..++..++..+..++ . .....+++++++.|..+.|++|. |+|+++|++.+.
T Consensus 307 i~lPpLr~R~~Di~~l~~~~l~~~~~~~----~--~~~~~~~~~a~~~L~~~~wpgNv--reL~~~i~~a~~ 370 (445)
T TIGR02915 307 ITIPPLRSRDGDAVLLANAFLERFAREL----K--RKTKGFTDDALRALEAHAWPGNV--RELENKVKRAVI 370 (445)
T ss_pred ecCCCchhchhhHHHHHHHHHHHHHHHh----C--CCCCCCCHHHHHHHHhCCCCChH--HHHHHHHHHHHH
Confidence 88888875 788878776544443322 1 11246999999999999999888 999999999885
No 107
>PRK15115 response regulator GlrR; Provisional
Probab=99.54 E-value=9.1e-14 Score=152.54 Aligned_cols=209 Identities=20% Similarity=0.325 Sum_probs=142.9
Q ss_pred CCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhh
Q 007362 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQA 382 (606)
Q Consensus 306 g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a 382 (606)
+.++.+....+....++.....++|.|++|||||++|+++++.. +.+|+.++|..+.+. ..-..+|...
T Consensus 138 g~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~--------~~~~~lfg~~ 209 (444)
T PRK15115 138 TRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ--------LLESELFGHA 209 (444)
T ss_pred ccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH--------HHHHHhcCCC
Confidence 44555555666666666667889999999999999999999986 479999999875421 1111233221
Q ss_pred -----------hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee-eecCCCCcccCCCCCcEE
Q 007362 383 -----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQ 450 (606)
Q Consensus 383 -----------~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~-~~i~~~g~~~~~~~~~v~ 450 (606)
.+.+..+.+++|||||||.|+.. +|..|++.|+... ..+... ..+
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~--------------~q~~L~~~l~~~~~~~~g~~--------~~~- 266 (444)
T PRK15115 210 RGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP--------------LQVKLLRVLQERKVRPLGSN--------RDI- 266 (444)
T ss_pred cCCCCCCccCCCCcEEECCCCEEEEEccccCCHH--------------HHHHHHHHHhhCCEEeCCCC--------cee-
Confidence 22344567899999999999988 9999999998433 222111 111
Q ss_pred EecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EE
Q 007362 451 MDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LV 529 (606)
Q Consensus 451 idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI 529 (606)
..++.+|++++. ++++.+..+. |.++|+.|+.. .|
T Consensus 267 --~~~~rii~~~~~-~l~~~~~~~~-----------------------------------------f~~~l~~~l~~~~i 302 (444)
T PRK15115 267 --DIDVRIISATHR-DLPKAMARGE-----------------------------------------FREDLYYRLNVVSL 302 (444)
T ss_pred --eeeEEEEEeCCC-CHHHHHHcCC-----------------------------------------ccHHHHHhhceeee
Confidence 124566666653 4666555433 55566666655 57
Q ss_pred EcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcc-cccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 530 SLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVK-LHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 530 ~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~-l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
.+++|.+ +|+..++..++..+..+ .+.. ..+++++++.|..+.|.+|. |+|+++|++++.
T Consensus 303 ~lPpLr~R~eDi~~l~~~~l~~~~~~-------~~~~~~~~~~~a~~~L~~~~WpgNv--reL~~~i~~~~~ 365 (444)
T PRK15115 303 KIPALAERTEDIPLLANHLLRQAAER-------HKPFVRAFSTDAMKRLMTASWPGNV--RQLVNVIEQCVA 365 (444)
T ss_pred cCCChHhccccHHHHHHHHHHHHHHH-------hCCCCCCcCHHHHHHHHhCCCCChH--HHHHHHHHHHHH
Confidence 7777775 67888877654444322 1222 35999999999999999988 999999999875
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=7.9e-14 Score=157.48 Aligned_cols=186 Identities=26% Similarity=0.342 Sum_probs=120.5
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++.+. + ....+||+||+|||||++|++||+.+
T Consensus 14 sf~d-IiGQe~v~~~L~~ai~~~--r----------------------------i~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 14 TFAE-VAGQETVKAILSRAAQEN--R----------------------------VAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred CHHH-hcCCHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCCCHHHHHHHHHHhc
Confidence 3444 799999999998888411 0 02679999999999999999999999
Q ss_pred CCc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++. ++++++.. ..+.+ .++.+.+.....-......||||||+|+|+..
T Consensus 63 ~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~-----~~~Id---~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~ 134 (624)
T PRK14959 63 NCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGAS-----NRGID---DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE 134 (624)
T ss_pred cccCCCCCCCCcccHHHHHHhcCCCCceEEEeccc-----ccCHH---HHHHHHHHHHhhhhcCCceEEEEEChHhCCHH
Confidence 753 22222211 11112 23333322222222345679999999999877
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.++.||+.||. ...+++||++++..
T Consensus 135 --------------a~naLLk~LEE---------------------P~~~~ifILaTt~~-------------------- 159 (624)
T PRK14959 135 --------------AFNALLKTLEE---------------------PPARVTFVLATTEP-------------------- 159 (624)
T ss_pred --------------HHHHHHHHhhc---------------------cCCCEEEEEecCCh--------------------
Confidence 89999999984 12345566655421
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+++|+. ++.|.+++.+++.+++... +...+ +
T Consensus 160 -----------------------------~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~i-----------l~~eg--i 196 (624)
T PRK14959 160 -----------------------------HKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKV-----------LGREG--V 196 (624)
T ss_pred -----------------------------hhhhHHHHhhhh-ccccCCCCHHHHHHHHHHH-----------HHHcC--C
Confidence 013345667763 6789999999988877642 11223 4
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILES 595 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~ 595 (606)
.+++++++.|++.+ +-++|.+-+++++
T Consensus 197 ~id~eal~lIA~~s---~GdlR~Al~lLeq 223 (624)
T PRK14959 197 DYDPAAVRLIARRA---AGSVRDSMSLLGQ 223 (624)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 58999999999874 2335666666654
No 109
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3e-14 Score=146.19 Aligned_cols=128 Identities=26% Similarity=0.379 Sum_probs=99.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|-|.-....++.+.|..|... +.+...+| -.+|..++||||||||||++|+++|...++.|+
T Consensus 134 ~ggl~~qirelre~ielpl~n---p~lf~rvg---------------Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl 195 (388)
T KOG0651|consen 134 VGGLFYQIRELREVIELPLTN---PELFLRVG---------------IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFL 195 (388)
T ss_pred hCChHHHHHHHHhheEeeccC---chhccccC---------------CCCCceeEEeCCCCCchhHHHHHHHHhcCCceE
Confidence 778888888888877644321 11111111 123589999999999999999999999999999
Q ss_pred ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 355 IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 355 ~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
.+.++.+. .+|.|++ .+++++.|..+... .+||||+||||+....+.+ ....+++++|..|.++++
T Consensus 196 ~v~ss~lv-~kyiGEs-aRlIRemf~yA~~~----~pciifmdeiDAigGRr~s---e~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 196 KVVSSALV-DKYIGES-ARLIRDMFRYAREV----IPCIIFMDEIDAIGGRRFS---EGTSSDREIQRTLMELLN 261 (388)
T ss_pred EeeHhhhh-hhhcccH-HHHHHHHHHHHhhh----CceEEeehhhhhhccEEec---cccchhHHHHHHHHHHHH
Confidence 99999998 5799998 88999999999877 7799999999987765532 233445678888888876
No 110
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.53 E-value=2.3e-14 Score=138.15 Aligned_cols=141 Identities=23% Similarity=0.435 Sum_probs=94.5
Q ss_pred hhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhh----
Q 007362 310 KTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQA---- 382 (606)
Q Consensus 310 ~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a---- 382 (606)
.|+.+.+..+.++..+.+|||+|++||||+++|++|++.. +.||+.++|..+.+ +..-..+|...
T Consensus 7 ~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~--------~~~e~~LFG~~~~~~ 78 (168)
T PF00158_consen 7 AMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE--------ELLESELFGHEKGAF 78 (168)
T ss_dssp HHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H--------HHHHHHHHEBCSSSS
T ss_pred HHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc--------chhhhhhhccccccc
Confidence 3333333334444556899999999999999999999976 46999999987642 22334555432
Q ss_pred -------hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecC
Q 007362 383 -------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTK 454 (606)
Q Consensus 383 -------~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~ 454 (606)
.+.+..+.+++||||||+.|+.. +|..|+++|+ +....+.+. ..+.+
T Consensus 79 ~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~--------------~Q~~Ll~~l~~~~~~~~g~~--------~~~~~--- 133 (168)
T PF00158_consen 79 TGARSDKKGLLEQANGGTLFLDEIEDLPPE--------------LQAKLLRVLEEGKFTRLGSD--------KPVPV--- 133 (168)
T ss_dssp TTTSSEBEHHHHHTTTSEEEEETGGGS-HH--------------HHHHHHHHHHHSEEECCTSS--------SEEE----
T ss_pred cccccccCCceeeccceEEeecchhhhHHH--------------HHHHHHHHHhhchhcccccc--------ccccc---
Confidence 34567889999999999999998 9999999999 444333221 12222
Q ss_pred ceeeeccCCCcChHHHHHhhhcccCCCcCc
Q 007362 455 DILFICGGAFVDLEKTISERRQDSSIGFGA 484 (606)
Q Consensus 455 nii~I~tgn~~~l~~~i~~~~~~~~igf~~ 484 (606)
++-+|++++ .++++.+.+++++.+++|..
T Consensus 134 ~~RiI~st~-~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 134 DVRIIASTS-KDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp -EEEEEEES-S-HHHHHHTTSS-HHHHHHH
T ss_pred cceEEeecC-cCHHHHHHcCCChHHHHHHh
Confidence 455666555 58999999998887766543
No 111
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.6e-14 Score=154.62 Aligned_cols=120 Identities=33% Similarity=0.470 Sum_probs=93.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC-ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhh----cCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV-PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEA----AQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~-~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~----a~~~ILfIDEiD 400 (606)
+++|||||||||||++||.|.+.||. +--.++.-+++ .+|+|++ +..++++|..+...... ..=.||++||||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL-~KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiD 334 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEIL-NKYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEID 334 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHH-HHhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhhH
Confidence 78999999999999999999999974 44567888888 5799999 78899999887644322 112599999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcCh
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL 467 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l 467 (606)
++++.|.+..++..+. ..+.|+||.-|||.. ...|+++|.-+|..||
T Consensus 335 AICKqRGS~~g~TGVh-D~VVNQLLsKmDGVe-------------------qLNNILVIGMTNR~Dl 381 (744)
T KOG0741|consen 335 AICKQRGSMAGSTGVH-DTVVNQLLSKMDGVE-------------------QLNNILVIGMTNRKDL 381 (744)
T ss_pred HHHHhcCCCCCCCCcc-HHHHHHHHHhcccHH-------------------hhhcEEEEeccCchhh
Confidence 9999988765544332 359999999999722 3467888877776664
No 112
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.2e-13 Score=150.79 Aligned_cols=185 Identities=25% Similarity=0.324 Sum_probs=121.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc--
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~-- 352 (606)
|+||+++++.|..++... ..+..+||+||||||||++|+++|+.+++.
T Consensus 16 vvGq~~v~~~L~~~i~~~------------------------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~ 65 (504)
T PRK14963 16 VVGQEHVKEVLLAALRQG------------------------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGE 65 (504)
T ss_pred hcChHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 899999999998887411 001345999999999999999999998531
Q ss_pred ---------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccc
Q 007362 353 ---------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (606)
Q Consensus 353 ---------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~ 411 (606)
++.+++.. ..+ ...++.+..........+...||||||+|.+...
T Consensus 66 ~~~~cg~C~sc~~i~~~~h~dv~el~~~~-----~~~---vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~------ 131 (504)
T PRK14963 66 DPKPCGECESCLAVRRGAHPDVLEIDAAS-----NNS---VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS------ 131 (504)
T ss_pred CCCCCCcChhhHHHhcCCCCceEEecccc-----cCC---HHHHHHHHHHHhhccccCCCeEEEEECccccCHH------
Confidence 22222211 111 1234444333222112246679999999988766
Q ss_pred ccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccc
Q 007362 412 SRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMR 491 (606)
Q Consensus 412 ~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~ 491 (606)
.++.|++.|+. ...+++||++++..
T Consensus 132 --------a~naLLk~LEe---------------------p~~~t~~Il~t~~~-------------------------- 156 (504)
T PRK14963 132 --------AFNALLKTLEE---------------------PPEHVIFILATTEP-------------------------- 156 (504)
T ss_pred --------HHHHHHHHHHh---------------------CCCCEEEEEEcCCh--------------------------
Confidence 89999999983 12344555544311
Q ss_pred cccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH
Q 007362 492 AGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA 571 (606)
Q Consensus 492 ~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a 571 (606)
..+.+.+.+|+ .++.|.+++.+++.+.+... +...+ +.+++++
T Consensus 157 -----------------------~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i-----------~~~eg--i~i~~~A 199 (504)
T PRK14963 157 -----------------------EKMPPTILSRT-QHFRFRRLTEEEIAGKLRRL-----------LEAEG--REAEPEA 199 (504)
T ss_pred -----------------------hhCChHHhcce-EEEEecCCCHHHHHHHHHHH-----------HHHcC--CCCCHHH
Confidence 11456677777 47899999999988887642 22234 4479999
Q ss_pred HHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 572 LRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 572 l~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
+++|++.+ +-..|.+.+.+++.+.
T Consensus 200 l~~ia~~s---~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 200 LQLVARLA---DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 99999874 2345777777777543
No 113
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=2.6e-13 Score=153.48 Aligned_cols=187 Identities=25% Similarity=0.375 Sum_probs=125.9
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+||+++++.|..++... .....+||+||+|||||++|+.+|+.++
T Consensus 15 f~~-viGq~~v~~~L~~~i~~~------------------------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 15 FED-VVGQEHITKTLKNAIKQG------------------------------KISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHh-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444 899999999998888411 0124589999999999999999999986
Q ss_pred Cc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhh
Q 007362 351 VP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (606)
Q Consensus 351 ~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r 406 (606)
+. ++.+++.. . .. ...++.+.+........+...|+||||+|+|+..
T Consensus 64 c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas-----~--~~-vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~- 134 (559)
T PRK05563 64 CLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS-----N--NG-VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG- 134 (559)
T ss_pred CCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc-----c--CC-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-
Confidence 42 22222211 0 11 2345555555443333456789999999999877
Q ss_pred hccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccc
Q 007362 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (606)
Q Consensus 407 ~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~ 486 (606)
.+++||+.||. ...+++||++++..
T Consensus 135 -------------a~naLLKtLEe---------------------pp~~~ifIlatt~~--------------------- 159 (559)
T PRK05563 135 -------------AFNALLKTLEE---------------------PPAHVIFILATTEP--------------------- 159 (559)
T ss_pred -------------HHHHHHHHhcC---------------------CCCCeEEEEEeCCh---------------------
Confidence 89999999984 12345666654411
Q ss_pred ccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccc
Q 007362 487 RANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLH 566 (606)
Q Consensus 487 ~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~ 566 (606)
..+.+.+++|+. .+.|.+++.+++...+... +...+ +.
T Consensus 160 ----------------------------~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i-----------~~~eg--i~ 197 (559)
T PRK05563 160 ----------------------------HKIPATILSRCQ-RFDFKRISVEDIVERLKYI-----------LDKEG--IE 197 (559)
T ss_pred ----------------------------hhCcHHHHhHhe-EEecCCCCHHHHHHHHHHH-----------HHHcC--CC
Confidence 125567778874 6789999999888877642 11224 45
Q ss_pred cCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 567 FTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 567 i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
+++++++.|++.+ +-+.|...+.+++.+
T Consensus 198 i~~~al~~ia~~s---~G~~R~al~~Ldq~~ 225 (559)
T PRK05563 198 YEDEALRLIARAA---EGGMRDALSILDQAI 225 (559)
T ss_pred CCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 8899999999873 235677777776553
No 114
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.5e-13 Score=154.28 Aligned_cols=196 Identities=22% Similarity=0.347 Sum_probs=122.6
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... + ....+||+||+|+|||++|+++|+.+
T Consensus 14 ~f~d-ivGq~~v~~~L~~~i~~~--~----------------------------~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 14 SFSE-LVGQEHVVRALTNALEQQ--R----------------------------LHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred cHHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998887411 0 01447999999999999999999999
Q ss_pred CCceee--cch------hhhhhc---CCc-----ccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccccc
Q 007362 350 NVPFVI--ADA------TTLTQA---GYV-----GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (606)
Q Consensus 350 ~~~fi~--i~~------s~l~~s---g~v-----G~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~ 413 (606)
++.... ..| ..+... .++ ...-...++.+.+.+...-..++..|+||||+|+++..
T Consensus 63 ~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~-------- 134 (527)
T PRK14969 63 NCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS-------- 134 (527)
T ss_pred cCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH--------
Confidence 753210 000 000000 000 00112335555554433322345679999999999887
Q ss_pred CcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccc
Q 007362 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (606)
Q Consensus 414 ~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~ 493 (606)
.+++||+.||. ...+++||++++..
T Consensus 135 ------a~naLLK~LEe---------------------pp~~~~fIL~t~d~---------------------------- 159 (527)
T PRK14969 135 ------AFNAMLKTLEE---------------------PPEHVKFILATTDP---------------------------- 159 (527)
T ss_pred ------HHHHHHHHHhC---------------------CCCCEEEEEEeCCh----------------------------
Confidence 89999999984 12344556554311
Q ss_pred cchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHH
Q 007362 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALR 573 (606)
Q Consensus 494 ~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~ 573 (606)
..+.+.+++|+ .++.|.+++.+++.+.+... ++..+ +.+++++++
T Consensus 160 ---------------------~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~i-----------l~~eg--i~~~~~al~ 204 (527)
T PRK14969 160 ---------------------QKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHI-----------LEQEN--IPFDATALQ 204 (527)
T ss_pred ---------------------hhCchhHHHHH-HHHhcCCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHH
Confidence 11334566776 58899999998877766532 22234 458899999
Q ss_pred HHHHccCCCCCChHHHHHHHHHHH
Q 007362 574 VIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 574 ~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.|++.+ +-..|...+.+++.+
T Consensus 205 ~la~~s---~Gslr~al~lldqai 225 (527)
T PRK14969 205 LLARAA---AGSMRDALSLLDQAI 225 (527)
T ss_pred HHHHHc---CCCHHHHHHHHHHHH
Confidence 999873 223576667766543
No 115
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.8e-13 Score=153.69 Aligned_cols=188 Identities=21% Similarity=0.287 Sum_probs=122.5
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... ..+..+||+||+|+|||++|+++|+.+
T Consensus 14 ~f~~-iiGq~~v~~~L~~~i~~~------------------------------~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 14 TFSD-LTGQEHVSRTLQNAIDTG------------------------------RVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred CHHH-ccCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3444 899999999998887411 012557999999999999999999998
Q ss_pred CCc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++. ++++++. ...+ ...++++.+.....-..++..|+||||+|+|+..
T Consensus 63 ~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~-----s~~~---v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~ 134 (576)
T PRK14965 63 NCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGA-----SNTG---VDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN 134 (576)
T ss_pred cCCCCCCCCCCCccHHHHHHhcCCCCCeeeeecc-----CccC---HHHHHHHHHHHHhccccCCceEEEEEChhhCCHH
Confidence 643 1112111 1111 1234555544433322346689999999999887
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.+++||+.||. ...+++||++++..
T Consensus 135 --------------a~naLLk~LEe---------------------pp~~~~fIl~t~~~-------------------- 159 (576)
T PRK14965 135 --------------AFNALLKTLEE---------------------PPPHVKFIFATTEP-------------------- 159 (576)
T ss_pred --------------HHHHHHHHHHc---------------------CCCCeEEEEEeCCh--------------------
Confidence 89999999994 12345566654411
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+++|+ ..+.|.+++.+++...+... +...+ +
T Consensus 160 -----------------------------~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i-----------~~~eg--i 196 (576)
T PRK14965 160 -----------------------------HKVPITILSRC-QRFDFRRIPLQKIVDRLRYI-----------ADQEG--I 196 (576)
T ss_pred -----------------------------hhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHH-----------HHHhC--C
Confidence 11445566776 47889999998877666532 12223 4
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.+++++++.|++.+ +.+.|.+.+.+++.+
T Consensus 197 ~i~~~al~~la~~a---~G~lr~al~~Ldqli 225 (576)
T PRK14965 197 SISDAALALVARKG---DGSMRDSLSTLDQVL 225 (576)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 58899999998874 233566666665543
No 116
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.50 E-value=2.5e-13 Score=149.38 Aligned_cols=210 Identities=19% Similarity=0.336 Sum_probs=143.0
Q ss_pred CCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHh
Q 007362 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (606)
Q Consensus 305 ~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~ 381 (606)
.+.++.+..+.+....++....++++.|++||||+++|++++... +.+|+.++|..+.+. ..-..+|..
T Consensus 146 i~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~--------~~~~~lfg~ 217 (457)
T PRK11361 146 LTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES--------LLESELFGH 217 (457)
T ss_pred ecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH--------HHHHHhcCC
Confidence 345556666666666666777899999999999999999999876 479999999875421 111222221
Q ss_pred h-----------hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee-cCCCCcccCCCCCcE
Q 007362 382 A-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN-VPEKGARKHPRGDSI 449 (606)
Q Consensus 382 a-----------~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~-i~~~g~~~~~~~~~v 449 (606)
. .+.+..+.+++|||||||.++.. +|..|+.+|+...+. +... ..+
T Consensus 218 ~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~--------------~q~~L~~~l~~~~~~~~~~~--------~~~ 275 (457)
T PRK11361 218 EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLV--------------LQAKLLRILQEREFERIGGH--------QTI 275 (457)
T ss_pred CCCCCCCCCCCCCCceEECCCCEEEEechhhCCHH--------------HHHHHHHHHhcCcEEeCCCC--------cee
Confidence 1 12344567899999999999988 999999999853322 1111 111
Q ss_pred EEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-E
Q 007362 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-L 528 (606)
Q Consensus 450 ~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-i 528 (606)
..++.+|++++ .++++++.++. |.++++.|+.. .
T Consensus 276 ---~~~~rii~~t~-~~l~~~~~~g~-----------------------------------------~~~~l~~~l~~~~ 310 (457)
T PRK11361 276 ---KVDIRIIAATN-RDLQAMVKEGT-----------------------------------------FREDLFYRLNVIH 310 (457)
T ss_pred ---eeceEEEEeCC-CCHHHHHHcCC-----------------------------------------chHHHHHHhccce
Confidence 12445666655 35555555433 55566666654 6
Q ss_pred EEcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcc-cccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 529 VSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVK-LHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 529 I~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~-l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
|.+++|.+ +|+..++..++..+. .. .+.. +.+++++++.|..+.|.+|. |+|+++|++.+.
T Consensus 311 i~~ppLreR~~di~~l~~~~l~~~~----~~---~~~~~~~~~~~a~~~L~~~~wpgNv--~eL~~~~~~~~~ 374 (457)
T PRK11361 311 LILPPLRDRREDISLLANHFLQKFS----SE---NQRDIIDIDPMAMSLLTAWSWPGNI--RELSNVIERAVV 374 (457)
T ss_pred ecCCChhhchhhHHHHHHHHHHHHH----HH---cCCCCCCcCHHHHHHHHcCCCCCcH--HHHHHHHHHHHH
Confidence 77888874 777777766544432 21 1223 46999999999999999888 999999998875
No 117
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.50 E-value=6e-13 Score=136.96 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=100.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhh-hcCCcc----cchHHHHHHHHH--------------hhhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT-QAGYVG----EDVESILYKLLA--------------QAEFN 385 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~-~sg~vG----~~~~~~l~~lf~--------------~a~~~ 385 (606)
..++||+||||||||++|+++|+.++.+|+.+++..-. .+.++| ......+..... ..+..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 37899999999999999999999999999998876422 112222 111111111100 01111
Q ss_pred hhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCc
Q 007362 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (606)
Q Consensus 386 l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~ 465 (606)
.+...+++|+||||+++.++ +|+.|+.+|+++.+.+++.+.. ..++....++.+|+|+|..
T Consensus 101 ~A~~~g~~lllDEi~r~~~~--------------~q~~Ll~~Le~~~~~i~~~~~~-----~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRSKPE--------------TNNVLLSVFEEGVLELPGKRGT-----SRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred HHHHcCCEEEEcchhhCCHH--------------HHHHHHHHhcCCeEEccCCCCC-----CceEecCCCCEEEEeeCCc
Confidence 12346789999999999888 9999999999877777654211 1122233566677777742
Q ss_pred ChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhh
Q 007362 466 DLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (606)
Q Consensus 466 ~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~ 545 (606)
... ..+.+.+.|++|| ..+.+..++.++..+|+..
T Consensus 162 ~~~--------------------------------------------g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 162 EYA--------------------------------------------GVHETQDALLDRL-ITIFMDYPDIDTETAILRA 196 (262)
T ss_pred ccc--------------------------------------------ceecccHHHHhhc-EEEECCCCCHHHHHHHHHH
Confidence 100 0011456788888 5677777788887888775
No 118
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.49 E-value=1.5e-13 Score=151.45 Aligned_cols=210 Identities=20% Similarity=0.336 Sum_probs=143.2
Q ss_pred CCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHh-
Q 007362 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ- 381 (606)
Q Consensus 306 g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~- 381 (606)
+.++.+..+......+......+++.|++||||+++|+++++.. +.+|+.++|..+.+. ..-..+|..
T Consensus 138 g~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~--------~~~~~lfg~~ 209 (463)
T TIGR01818 138 GEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKD--------LIESELFGHE 209 (463)
T ss_pred ecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHH--------HHHHHhcCCC
Confidence 44455555555555555566889999999999999999999876 469999999875421 111112221
Q ss_pred ----------hhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee-eecCCCCcccCCCCCcEE
Q 007362 382 ----------AEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI-VNVPEKGARKHPRGDSIQ 450 (606)
Q Consensus 382 ----------a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~-~~i~~~g~~~~~~~~~v~ 450 (606)
..+.+..+.+++||||||+.++.. +|..|+++|+... ..+.+. ..+.
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~--------------~q~~ll~~l~~~~~~~~~~~--------~~~~ 267 (463)
T TIGR01818 210 KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD--------------AQTRLLRVLADGEFYRVGGR--------TPIK 267 (463)
T ss_pred CCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH--------------HHHHHHHHHhcCcEEECCCC--------ceee
Confidence 122244567899999999999988 9999999998433 222111 1112
Q ss_pred EecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EE
Q 007362 451 MDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LV 529 (606)
Q Consensus 451 idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI 529 (606)
. ++-+|++++ .++++.+..+ .|.++|+.|+.. .|
T Consensus 268 ~---~~rii~~~~-~~l~~~~~~~-----------------------------------------~f~~~L~~rl~~~~i 302 (463)
T TIGR01818 268 V---DVRIVAATH-QNLEALVRQG-----------------------------------------KFREDLFHRLNVIRI 302 (463)
T ss_pred e---eeEEEEeCC-CCHHHHHHcC-----------------------------------------CcHHHHHHHhCccee
Confidence 2 344565554 3444444322 266778888876 78
Q ss_pred EcCCcC--HHHHHHHHhhhHHHHHHHHHHHHhcCCcc-cccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 007362 530 SLTALT--EDQLVKVLTEPKNALGKQYKRLFSMNNVK-LHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 530 ~f~~Ls--~eel~~Il~~~l~~L~k~~~~~~~~~~i~-l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
.+++|. .+|+..++..++..+.+++ +.. ..+++++++.|..+.|.+|. |+|++++++.+..
T Consensus 303 ~lPpLr~R~~Di~~l~~~~l~~~~~~~-------~~~~~~~~~~a~~~L~~~~wpgNv--reL~~~~~~~~~~ 366 (463)
T TIGR01818 303 HLPPLRERREDIPRLARHFLALAAREL-------DVEPKLLDPEALERLKQLRWPGNV--RQLENLCRWLTVM 366 (463)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHh-------CCCCCCcCHHHHHHHHhCCCCChH--HHHHHHHHHHHHh
Confidence 899998 5888888887655543322 222 35999999999999999988 9999999998763
No 119
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.48 E-value=2.6e-13 Score=141.47 Aligned_cols=213 Identities=23% Similarity=0.351 Sum_probs=144.6
Q ss_pred CChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhh
Q 007362 307 AEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAE 383 (606)
Q Consensus 307 ~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~ 383 (606)
.|..|+.+..+.+.++.....+||.|.+||||.++||+.+... ..||+-++|..+-+. ..-.++|..++
T Consensus 209 ~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~--------~aEsElFG~ap 280 (511)
T COG3283 209 VSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED--------AAESELFGHAP 280 (511)
T ss_pred ccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh--------HhHHHHhcCCC
Confidence 3444555555555566667889999999999999999988776 579999999876532 11124444333
Q ss_pred ------hhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCce
Q 007362 384 ------FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDI 456 (606)
Q Consensus 384 ------~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~ni 456 (606)
+.++.+.++.+|+|||..+++. .|..||.+|. |+...+.++ ..+.+|.
T Consensus 281 g~~gk~GffE~AngGTVlLDeIgEmSp~--------------lQaKLLRFL~DGtFRRVGee--------~Ev~vdV--- 335 (511)
T COG3283 281 GDEGKKGFFEQANGGTVLLDEIGEMSPR--------------LQAKLLRFLNDGTFRRVGED--------HEVHVDV--- 335 (511)
T ss_pred CCCCccchhhhccCCeEEeehhhhcCHH--------------HHHHHHHHhcCCceeecCCc--------ceEEEEE---
Confidence 4456678999999999999998 9999999997 555444332 3444544
Q ss_pred eeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCH
Q 007362 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE 536 (606)
Q Consensus 457 i~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~ 536 (606)
-+||++ ..++.+++..+.++.++.+..++... -.|+|.+|.
T Consensus 336 RVIcat-q~nL~~lv~~g~fReDLfyRLNVLtl---------------------------~~PpLRer~----------- 376 (511)
T COG3283 336 RVICAT-QVNLVELVQKGKFREDLFYRLNVLTL---------------------------NLPPLRERP----------- 376 (511)
T ss_pred EEEecc-cccHHHHHhcCchHHHHHHHhheeee---------------------------cCCccccCc-----------
Confidence 466655 46788888887776666555444322 234444444
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 007362 537 DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 537 eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
+++.-+.+.++.++. ..+.+. .-+++++.+.+|.++.|.+|. |+|++.|.+.+..
T Consensus 377 ~di~pL~e~Fv~q~s----~elg~p--~pkl~~~~~~~L~~y~WpGNV--RqL~N~iyRA~s~ 431 (511)
T COG3283 377 QDIMPLAELFVQQFS----DELGVP--RPKLAADLLTVLTRYAWPGNV--RQLKNAIYRALTL 431 (511)
T ss_pred ccchHHHHHHHHHHH----HHhCCC--CCccCHHHHHHHHHcCCCccH--HHHHHHHHHHHHH
Confidence 444455554433333 323222 345999999999999999987 9999999887653
No 120
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.47 E-value=1.5e-13 Score=145.72 Aligned_cols=130 Identities=33% Similarity=0.442 Sum_probs=94.9
Q ss_pred ChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHH
Q 007362 263 TPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLA 342 (606)
Q Consensus 263 ~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lA 342 (606)
....+...+.+.++|+++++..+..++. ...++||.||||||||++|
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~---------------------------------~~~~vll~G~PG~gKT~la 60 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL---------------------------------AGGHVLLEGPPGVGKTLLA 60 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHH---------------------------------cCCCEEEECCCCccHHHHH
Confidence 3445667777778999999888877774 1389999999999999999
Q ss_pred HHHHHHhCCceeecchh-hhhhcCCcccchHHHH---HHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 343 KTLARHVNVPFVIADAT-TLTQAGYVGEDVESIL---YKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 343 ralA~~l~~~fi~i~~s-~l~~sg~vG~~~~~~l---~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
+.+|+.++.+|++++++ ++..+..+|...-... ...+.-..+.+-.+..+|+|+|||++..++
T Consensus 61 ~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~------------- 127 (329)
T COG0714 61 RALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE------------- 127 (329)
T ss_pred HHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-------------
Confidence 99999999999999999 4444455554422111 111111111121222259999999999888
Q ss_pred HHHHHHHHHHhceeeecCCCC
Q 007362 419 GVQQALLKMLEGTIVNVPEKG 439 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g 439 (606)
+|++||++|+++++++.+.+
T Consensus 128 -~q~aLl~~l~e~~vtv~~~~ 147 (329)
T COG0714 128 -VQNALLEALEERQVTVPGLT 147 (329)
T ss_pred -HHHHHHHHHhCcEEEECCcC
Confidence 99999999999888887664
No 121
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.47 E-value=4.3e-13 Score=149.41 Aligned_cols=236 Identities=19% Similarity=0.237 Sum_probs=131.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~---- 350 (606)
|+||+.+++.|..++. ...+++|.||||||||++|+.++..+.
T Consensus 194 v~Gq~~~~~al~~aa~---------------------------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~ 240 (499)
T TIGR00368 194 IKGQQHAKRALEIAAA---------------------------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTN 240 (499)
T ss_pred hcCcHHHHhhhhhhcc---------------------------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCC
Confidence 8999999988866652 127899999999999999999998652
Q ss_pred Cceeecchhhhhhc-C------------Cc----ccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccccc
Q 007362 351 VPFVIADATTLTQA-G------------YV----GEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (606)
Q Consensus 351 ~~fi~i~~s~l~~s-g------------~v----G~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~ 413 (606)
..++. .+.+.+. + |. .......+-......++.+..++++||||||++.+.+.
T Consensus 241 ~~~le--~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~-------- 310 (499)
T TIGR00368 241 EEAIE--TARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS-------- 310 (499)
T ss_pred cEEEe--ccccccchhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH--------
Confidence 11111 1111000 0 00 00000000000011233466778999999999999887
Q ss_pred CcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccc
Q 007362 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (606)
Q Consensus 414 ~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~ 493 (606)
+|+.|++.||...+.+...+..... ..++.+|+++|.-. -+ .|+.+.. .=
T Consensus 311 ------~~~~L~~~LE~~~v~i~r~g~~~~~--------pa~frlIaa~Npcp------cg------~~~~~~~----~c 360 (499)
T TIGR00368 311 ------VLDALREPIEDGSISISRASAKIFY--------PARFQLVAAMNPCP------CG------HYGGKNT----HC 360 (499)
T ss_pred ------HHHHHHHHHHcCcEEEEecCcceec--------cCCeEEEEecCCcc------cC------cCCCCcc----cc
Confidence 9999999999777666554432222 23455565555310 00 0110000 00
Q ss_pred cchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHH---------HHhhhHHHHHHHHHHHHhcC---
Q 007362 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVK---------VLTEPKNALGKQYKRLFSMN--- 561 (606)
Q Consensus 494 ~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~---------Il~~~l~~L~k~~~~~~~~~--- 561 (606)
........+++.+ +..+|++|||.++.+++++.+++.+ +-.+....-..+. +.+...
T Consensus 361 ~c~~~~~~~y~~~----------is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~-~R~~~~~~~ 429 (499)
T TIGR00368 361 RCSPQQISRYWNK----------LSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQN-IRYEKFANI 429 (499)
T ss_pred cCCHHHHHHHhhh----------ccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHhcCCCCC
Confidence 0122222344443 7789999999999999988776533 1111111111111 111111
Q ss_pred Ccc-----------cccCHHHHHHHHHccCCCCCChHHHHHHHH
Q 007362 562 NVK-----------LHFTEKALRVIAKKATAKNTGARGLRAILE 594 (606)
Q Consensus 562 ~i~-----------l~i~e~al~~La~~a~~~~~GAR~L~~~Ie 594 (606)
.++ ..+++++.+.|.+..-..++++|...+++.
T Consensus 430 ~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilr 473 (499)
T TIGR00368 430 NKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILK 473 (499)
T ss_pred cccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 011 235777777766655556788999988885
No 122
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.46 E-value=1e-12 Score=150.78 Aligned_cols=221 Identities=21% Similarity=0.275 Sum_probs=135.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l----- 349 (606)
|+||+++|..|..++.+. ...+|||.|++|||||++|++|++.+
T Consensus 6 ivGq~~~~~al~~~av~~-------------------------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~ 54 (633)
T TIGR02442 6 IVGQEDLKLALLLNAVDP-------------------------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDV 54 (633)
T ss_pred hcChHHHHHHHHHHhhCC-------------------------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCcee
Confidence 899999999887666311 01579999999999999999999998
Q ss_pred ------------------------------CCceeecchhhhhhcCCcccc-hHHHHHH-HHHhhhhhhhhcCCCEEEEc
Q 007362 350 ------------------------------NVPFVIADATTLTQAGYVGED-VESILYK-LLAQAEFNVEAAQQGMVYID 397 (606)
Q Consensus 350 ------------------------------~~~fi~i~~s~l~~sg~vG~~-~~~~l~~-lf~~a~~~l~~a~~~ILfID 397 (606)
..+|+.+.+.... ..++|.. .+..+.. -+....+.+..++++|||||
T Consensus 55 ~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~-~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lD 133 (633)
T TIGR02442 55 VAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATE-DRVVGSLDIERALREGEKAFQPGLLAEAHRGILYID 133 (633)
T ss_pred ccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcH-HHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeC
Confidence 2456555443221 2233432 1111110 01112344556788999999
Q ss_pred ccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcc
Q 007362 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD 477 (606)
Q Consensus 398 EiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~ 477 (606)
||+++... +|+.|++.|+...+.+...|.. ... ..++++|+|.|..
T Consensus 134 Ei~~l~~~--------------~q~~Ll~~le~g~~~v~r~g~~-------~~~-~~~~~lIat~np~------------ 179 (633)
T TIGR02442 134 EVNLLDDH--------------LVDVLLDAAAMGVNRVEREGLS-------VSH-PARFVLIGTMNPE------------ 179 (633)
T ss_pred hhhhCCHH--------------HHHHHHHHHhcCCEEEEECCce-------eee-cCCeEEEEecCCC------------
Confidence 99999988 9999999999554333333211 112 2456666665521
Q ss_pred cCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcC-HHHHHHHHhhhHH--------
Q 007362 478 SSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT-EDQLVKVLTEPKN-------- 548 (606)
Q Consensus 478 ~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls-~eel~~Il~~~l~-------- 548 (606)
...|.++|++||+..|.+.... .++..+|+...+.
T Consensus 180 ------------------------------------eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~ 223 (633)
T TIGR02442 180 ------------------------------------EGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAF 223 (633)
T ss_pred ------------------------------------CCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHH
Confidence 0126788999999888877665 4555666654221
Q ss_pred ---------HHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCC-ChHHHHHHHHHHHH
Q 007362 549 ---------ALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNT-GARGLRAILESILT 598 (606)
Q Consensus 549 ---------~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~-GAR~L~~~Ie~~l~ 598 (606)
.+.+.+.. ....--.+.++++++++|+..+...+. |.|....++.-.-.
T Consensus 224 ~~~~~~~~~~l~~~i~~-ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara 282 (633)
T TIGR02442 224 AARWAAEQEELRNRIAR-ARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARA 282 (633)
T ss_pred HHHhhhhHHHHHHHHHH-HHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence 01111111 111122467899999999988766666 56666665554433
No 123
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.46 E-value=5.3e-13 Score=144.78 Aligned_cols=123 Identities=22% Similarity=0.279 Sum_probs=76.3
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+||+++++.|..++....... . .... ..+..+||+||+|+|||++|+++|+.+.
T Consensus 4 f~~-IiGq~~~~~~L~~~i~~~~~~~--~----------------~~~~---~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 4 WDD-LVGQEAVVAELRAAARAARADV--A----------------AAGS---GMTHAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred hhh-ccChHHHHHHHHHHHHhccccc--c----------------ccCC---CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 444 8999999999999985321000 0 0000 0136799999999999999999999886
Q ss_pred Cceee-cc------hhhhh----------hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccccc
Q 007362 351 VPFVI-AD------ATTLT----------QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (606)
Q Consensus 351 ~~fi~-i~------~s~l~----------~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~ 413 (606)
+..-. .. |..+. ...-.... ...++.+++.+...-..+...|+||||+|+++..
T Consensus 62 c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~-i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------- 132 (394)
T PRK07940 62 CTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIG-VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------- 132 (394)
T ss_pred CCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCC-HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH--------
Confidence 53210 00 00000 00000011 2235566655543323346679999999999887
Q ss_pred CcchhHHHHHHHHHHhc
Q 007362 414 DVSGEGVQQALLKMLEG 430 (606)
Q Consensus 414 ~~s~~~vq~~LL~~Leg 430 (606)
.+|.||+.||.
T Consensus 133 ------aanaLLk~LEe 143 (394)
T PRK07940 133 ------AANALLKAVEE 143 (394)
T ss_pred ------HHHHHHHHhhc
Confidence 88999999984
No 124
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=9.4e-13 Score=143.28 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=115.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|+||+.+++.|..++.+. + .+..+||+||+|+|||++|+++|+.+.+.-.
T Consensus 18 iiGq~~~~~~L~~~~~~~--~----------------------------~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~ 67 (397)
T PRK14955 18 ITAQEHITRTIQNSLRMG--R----------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRM 67 (397)
T ss_pred ccChHHHHHHHHHHHHhC--C----------------------------cceeEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 899999999998877421 0 1245999999999999999999999966310
Q ss_pred e----------cchh------hhhh---cC---Ccccc--hHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccc
Q 007362 355 I----------ADAT------TLTQ---AG---YVGED--VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (606)
Q Consensus 355 ~----------i~~s------~l~~---sg---~vG~~--~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~ 410 (606)
. -.|. .+.. .. +.+.. ....++.+.+........+...||||||+|.++..
T Consensus 68 ~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~----- 142 (397)
T PRK14955 68 IDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA----- 142 (397)
T ss_pred cCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-----
Confidence 0 0010 0000 00 11111 01234444443322222346679999999999876
Q ss_pred cccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccc
Q 007362 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (606)
Q Consensus 411 ~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~ 490 (606)
.++.|++.||. .....+||++++. ..
T Consensus 143 ---------~~~~LLk~LEe---------------------p~~~t~~Il~t~~--~~---------------------- 168 (397)
T PRK14955 143 ---------AFNAFLKTLEE---------------------PPPHAIFIFATTE--LH---------------------- 168 (397)
T ss_pred ---------HHHHHHHHHhc---------------------CCCCeEEEEEeCC--hH----------------------
Confidence 88999999983 1122334443321 11
Q ss_pred ccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH
Q 007362 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (606)
Q Consensus 491 ~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~ 570 (606)
.+.+.+.+|+ .++.|.+++++++.+.+... +... .+.++++
T Consensus 169 -------------------------kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~-----------~~~~--g~~i~~~ 209 (397)
T PRK14955 169 -------------------------KIPATIASRC-QRFNFKRIPLEEIQQQLQGI-----------CEAE--GISVDAD 209 (397)
T ss_pred -------------------------HhHHHHHHHH-HHhhcCCCCHHHHHHHHHHH-----------HHHc--CCCCCHH
Confidence 1234445555 37889999999988776642 1112 3558999
Q ss_pred HHHHHHHccCCCCCChHHHHHHHHHH
Q 007362 571 ALRVIAKKATAKNTGARGLRAILESI 596 (606)
Q Consensus 571 al~~La~~a~~~~~GAR~L~~~Ie~~ 596 (606)
++++|++.+ +...|.+.+.++++
T Consensus 210 al~~l~~~s---~g~lr~a~~~L~kl 232 (397)
T PRK14955 210 ALQLIGRKA---QGSMRDAQSILDQV 232 (397)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 999999874 22346666666553
No 125
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.1e-13 Score=147.82 Aligned_cols=129 Identities=29% Similarity=0.409 Sum_probs=101.1
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
.+.|......++.+++...+. +.......| ..++.++|+|||||||||++++++|++.+..+
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~---~~~~~~s~g---------------~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~ 246 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLR---HPALFKSIG---------------IKPPRGLLLYGPPGTGKTFLVRAVANEYGAFL 246 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhc---chhhhhhcC---------------CCCCCCccccCCCCCChHHHHHHHHHHhCcee
Confidence 478888888888888863322 111111111 12358999999999999999999999999999
Q ss_pred eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcC-CCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 354 VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQ-QGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 354 i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~-~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
+.+++.++. .++.|++ ++.+++.|+.+... + ++||||||+|.+.+++...+. -..++..+|+.+|+|
T Consensus 247 ~~i~~peli-~k~~gEt-e~~LR~~f~~a~k~----~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg 314 (693)
T KOG0730|consen 247 FLINGPELI-SKFPGET-ESNLRKAFAEALKF----QVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDG 314 (693)
T ss_pred EecccHHHH-Hhcccch-HHHHHHHHHHHhcc----CCCeeEeHHhHhhhCCcccccch----HHHHHHHHHHHHHhh
Confidence 999999998 4588888 88899999988766 5 899999999999998665443 123589999999996
No 126
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.46 E-value=9.7e-13 Score=150.36 Aligned_cols=195 Identities=24% Similarity=0.307 Sum_probs=117.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh----------CCceeecchhhhhh------cCCcccchHHH---HHHHHH------
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLTQ------AGYVGEDVESI---LYKLLA------ 380 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l----------~~~fi~i~~s~l~~------sg~vG~~~~~~---l~~lf~------ 380 (606)
.+++|+||||||||++|+++++.+ +.+|+.+++..+.. ..+.|...... ....+.
T Consensus 176 ~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~ 255 (615)
T TIGR02903 176 QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPE 255 (615)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCc
Confidence 679999999999999999999766 35788888875420 01122110000 001111
Q ss_pred hhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCC----CcEEE---ec
Q 007362 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRG----DSIQM---DT 453 (606)
Q Consensus 381 ~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~----~~v~i---dt 453 (606)
.....+..+.+++|||||++.|... .|+.|+++|+...+.+....-...... -...+ ..
T Consensus 256 ~~~g~v~~asgGvL~LDEi~~Ld~~--------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~ 321 (615)
T TIGR02903 256 PKTGLVTDAHGGVLFIDEIGELDPL--------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAP 321 (615)
T ss_pred hhcCchhhcCCCeEEEeccccCCHH--------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCcc
Confidence 1122344567899999999999888 999999999855443211100000000 00000 12
Q ss_pred CceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCC
Q 007362 454 KDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTA 533 (606)
Q Consensus 454 ~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~ 533 (606)
.++++|++++.. ...+.+.|.+|+. .+.|.+
T Consensus 322 ~~~VLI~aTt~~------------------------------------------------~~~l~~aLrSR~~-~i~~~p 352 (615)
T TIGR02903 322 ADFVLIGATTRD------------------------------------------------PEEINPALRSRCA-EVFFEP 352 (615)
T ss_pred ceEEEEEecccc------------------------------------------------ccccCHHHHhcee-EEEeCC
Confidence 234555443311 0125678888986 568999
Q ss_pred cCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHH
Q 007362 534 LTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (606)
Q Consensus 534 Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~a 600 (606)
++.+|+..|+...+. .. .+.+++++++.|+++.|+ +|...+.|+..+.-+
T Consensus 353 ls~edi~~Il~~~a~-----------~~--~v~ls~eal~~L~~ys~~----gRraln~L~~~~~~~ 402 (615)
T TIGR02903 353 LTPEDIALIVLNAAE-----------KI--NVHLAAGVEELIARYTIE----GRKAVNILADVYGYA 402 (615)
T ss_pred CCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHCCCc----HHHHHHHHHHHHHHH
Confidence 999999999886321 11 245899999999998763 355556666655443
No 127
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.45 E-value=1.3e-12 Score=143.53 Aligned_cols=232 Identities=16% Similarity=0.210 Sum_probs=136.0
Q ss_pred hHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHH
Q 007362 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (606)
Q Consensus 264 ~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAr 343 (606)
...+.+.+.+.|+|++++++.+..++. ...+|||+||||||||++|+
T Consensus 11 i~~l~~~l~~~i~gre~vI~lll~aal---------------------------------ag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 11 ISRLSSALEKGLYERSHAIRLCLLAAL---------------------------------SGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHc---------------------------------cCCCEEEECCCChhHHHHHH
Confidence 345778899999999999999977773 23899999999999999999
Q ss_pred HHHHHhCC--ceeecchhhhhhcCCcccchHHHH--HHHHH-hhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 344 TLARHVNV--PFVIADATTLTQAGYVGEDVESIL--YKLLA-QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 344 alA~~l~~--~fi~i~~s~l~~sg~vG~~~~~~l--~~lf~-~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
+||+.+.. +|..+.+...+...++|...-... ...|. ...+.+. ...+||+|||++++++
T Consensus 58 aLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~--~A~lLfLDEI~rasp~------------- 122 (498)
T PRK13531 58 RLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLP--EAEIVFLDEIWKAGPA------------- 122 (498)
T ss_pred HHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccc--cccEEeecccccCCHH-------------
Confidence 99998743 444333321111223332100000 01111 1111111 1239999999999988
Q ss_pred HHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhH
Q 007362 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~ 498 (606)
+|+.||++|+++.+++.+. .......++++++|. +.+
T Consensus 123 -~QsaLLeam~Er~~t~g~~-----------~~~lp~rfiv~ATN~--LPE----------------------------- 159 (498)
T PRK13531 123 -ILNTLLTAINERRFRNGAH-----------EEKIPMRLLVTASNE--LPE----------------------------- 159 (498)
T ss_pred -HHHHHHHHHHhCeEecCCe-----------EEeCCCcEEEEECCC--Ccc-----------------------------
Confidence 9999999998777765322 223333344444441 110
Q ss_pred hHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcC-HHHHHHHHhhhHHH----------H-HHHHHHHHhcCCcccc
Q 007362 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT-EDQLVKVLTEPKNA----------L-GKQYKRLFSMNNVKLH 566 (606)
Q Consensus 499 ~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls-~eel~~Il~~~l~~----------L-~k~~~~~~~~~~i~l~ 566 (606)
...+.+++++||-..+.+++++ .++..+++...... + .+.+... ...-..+.
T Consensus 160 ---------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~l-q~~v~~V~ 223 (498)
T PRK13531 160 ---------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQW-QKEIGKIT 223 (498)
T ss_pred ---------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHH-HHHhccee
Confidence 1125567888886678888886 45556666431100 0 0111111 11123466
Q ss_pred cCHHHHHHHHHccC-----C--CCCChHHHHHHHHHHHHHHHH
Q 007362 567 FTEKALRVIAKKAT-----A--KNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 567 i~e~al~~La~~a~-----~--~~~GAR~L~~~Ie~~l~~al~ 602 (606)
++++++++|.+..- . ...+-|....++.-.=..|+.
T Consensus 224 v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l 266 (498)
T PRK13531 224 LPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFF 266 (498)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHH
Confidence 89999998876532 1 225667777766655444444
No 128
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.45 E-value=8.6e-13 Score=140.14 Aligned_cols=221 Identities=22% Similarity=0.293 Sum_probs=127.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~---- 350 (606)
|+||+++|+.|..++... + ..|+||+|+||||||++|+++|+.+.
T Consensus 10 i~Gq~~~~~~l~~~~~~~-----------~--------------------~~~vLl~G~pG~gKT~lar~la~llP~~~~ 58 (334)
T PRK13407 10 IVGQEEMKQAMVLTAIDP-----------G--------------------IGGVLVFGDRGTGKSTAVRALAALLPLIKA 58 (334)
T ss_pred hCCHHHHHHHHHHHHhcc-----------C--------------------CCcEEEEcCCCCCHHHHHHHHHHHCCCcch
Confidence 899999999987655210 0 16899999999999999999999983
Q ss_pred ---Cc--eeecchh-hh----------------------hhcCCcccc-hHHHH-HHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 351 ---VP--FVIADAT-TL----------------------TQAGYVGED-VESIL-YKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 351 ---~~--fi~i~~s-~l----------------------~~sg~vG~~-~~~~l-~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
.+ +..+.+. ++ .+...+|.- .+..+ ..-+....+.+..+++++||||||+
T Consensus 59 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEIn 138 (334)
T PRK13407 59 VEGCPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVN 138 (334)
T ss_pred hcccccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChH
Confidence 21 1111111 00 000122211 01000 0001112334455778999999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
.+.++ +|+.|++.|+...+.+...|... .. ...+++|.+.|..
T Consensus 139 rl~~~--------------~q~~Lle~mee~~v~v~r~G~~~-------~~-p~rfiviAt~NP~--------------- 181 (334)
T PRK13407 139 LLEDH--------------IVDLLLDVAQSGENVVEREGLSI-------RH-PARFVLVGSGNPE--------------- 181 (334)
T ss_pred hCCHH--------------HHHHHHHHHHcCCeEEEECCeEE-------ec-CCCEEEEecCCcc---------------
Confidence 99888 99999999996554443333211 11 2345555555531
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCH-HHHHHHHhhhHH------HHH--
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE-DQLVKVLTEPKN------ALG-- 551 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~-eel~~Il~~~l~------~L~-- 551 (606)
...+.+.+++||...+.+.+... ++..+|+..... .+.
T Consensus 182 ---------------------------------e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~ 228 (334)
T PRK13407 182 ---------------------------------EGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAK 228 (334)
T ss_pred ---------------------------------cCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhcc
Confidence 11267789999988888776655 666666664321 010
Q ss_pred ---------HHHHHHHhcCCcccccCHHHHHHHHHccCCCC-CChHHHHHHHHHHH
Q 007362 552 ---------KQYKRLFSMNNVKLHFTEKALRVIAKKATAKN-TGARGLRAILESIL 597 (606)
Q Consensus 552 ---------k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~-~GAR~L~~~Ie~~l 597 (606)
.++... ...--++.+++++++|+++.+.... -|-|.--.++...-
T Consensus 229 ~~~~~~~~~~~i~~a-~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~ 283 (334)
T PRK13407 229 WGAEDMQLRGRILGA-RARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAAR 283 (334)
T ss_pred ccccccCCHHHHHHH-HHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 111111 1112346799999999998754333 25554444444333
No 129
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.1e-12 Score=146.53 Aligned_cols=189 Identities=26% Similarity=0.363 Sum_probs=124.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... . .+..+||+||+|+|||++|+++|+.+
T Consensus 12 ~fde-iiGqe~v~~~L~~~I~~g-------r-----------------------l~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 12 HFDE-LIGQESVSKTLSLALDNN-------R-----------------------LAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred CHHH-ccCcHHHHHHHHHHHHcC-------C-----------------------CCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 3444 899999999998888411 0 12457999999999999999999988
Q ss_pred CCc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
... ++.+++.. ..| -..++.+..........+...|+||||+|+++..
T Consensus 61 ~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas-----~~g---Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~ 132 (535)
T PRK08451 61 VCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS-----NRG---IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE 132 (535)
T ss_pred cCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc-----ccC---HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH
Confidence 431 12222111 011 1234444443222212245679999999999887
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.+++||+.||. ...+++||++++..
T Consensus 133 --------------A~NALLK~LEE---------------------pp~~t~FIL~ttd~-------------------- 157 (535)
T PRK08451 133 --------------AFNALLKTLEE---------------------PPSYVKFILATTDP-------------------- 157 (535)
T ss_pred --------------HHHHHHHHHhh---------------------cCCceEEEEEECCh--------------------
Confidence 99999999984 12345556554310
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+++|+ .++.|.+++.+++...+... +...+ +
T Consensus 158 -----------------------------~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~I-----------l~~EG--i 194 (535)
T PRK08451 158 -----------------------------LKLPATILSRT-QHFRFKQIPQNSIISHLKTI-----------LEKEG--V 194 (535)
T ss_pred -----------------------------hhCchHHHhhc-eeEEcCCCCHHHHHHHHHHH-----------HHHcC--C
Confidence 12567788886 58899999998887776532 22234 4
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
.++++++++|++.+ +-+.|.+.+.+++.+.
T Consensus 195 ~i~~~Al~~Ia~~s---~GdlR~alnlLdqai~ 224 (535)
T PRK08451 195 SYEPEALEILARSG---NGSLRDTLTLLDQAII 224 (535)
T ss_pred CCCHHHHHHHHHHc---CCcHHHHHHHHHHHHH
Confidence 58999999999874 2346777777766543
No 130
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=8.9e-13 Score=148.42 Aligned_cols=186 Identities=25% Similarity=0.349 Sum_probs=121.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+||+.+++.|..++... ..+..+||+||+|+|||++|+++|+.+.
T Consensus 15 F~d-IIGQe~iv~~L~~aI~~~------------------------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 15 FKQ-IIGQELIKKILVNAILNN------------------------------KLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHH-hcCcHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 444 799999999998877411 0125699999999999999999999985
Q ss_pred Cc------------------------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhh
Q 007362 351 VP------------------------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (606)
Q Consensus 351 ~~------------------------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r 406 (606)
+. ++.+++. ...+. ..++.+.+.....-..+...|++|||+|.++..
T Consensus 64 C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaa-----s~igV---d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~- 134 (605)
T PRK05896 64 CLNPKDGDCCNSCSVCESINTNQSVDIVELDAA-----SNNGV---DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS- 134 (605)
T ss_pred CCCCCCCCCCcccHHHHHHHcCCCCceEEeccc-----cccCH---HHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-
Confidence 31 1112111 11121 234444443332222345679999999999876
Q ss_pred hccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccc
Q 007362 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (606)
Q Consensus 407 ~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~ 486 (606)
.+++||+.||. ...+++||++++..
T Consensus 135 -------------A~NaLLKtLEE---------------------Pp~~tvfIL~Tt~~--------------------- 159 (605)
T PRK05896 135 -------------AWNALLKTLEE---------------------PPKHVVFIFATTEF--------------------- 159 (605)
T ss_pred -------------HHHHHHHHHHh---------------------CCCcEEEEEECCCh---------------------
Confidence 89999999984 12345555544311
Q ss_pred ccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccc
Q 007362 487 RANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLH 566 (606)
Q Consensus 487 ~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~ 566 (606)
..+.+.+++|+. ++.|.+++.+++...+... +...+ +.
T Consensus 160 ----------------------------~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~i-----------l~keg--i~ 197 (605)
T PRK05896 160 ----------------------------QKIPLTIISRCQ-RYNFKKLNNSELQELLKSI-----------AKKEK--IK 197 (605)
T ss_pred ----------------------------HhhhHHHHhhhh-hcccCCCCHHHHHHHHHHH-----------HHHcC--CC
Confidence 114566778874 7899999999988877642 11223 45
Q ss_pred cCHHHHHHHHHccCCCCCChHHHHHHHHHH
Q 007362 567 FTEKALRVIAKKATAKNTGARGLRAILESI 596 (606)
Q Consensus 567 i~e~al~~La~~a~~~~~GAR~L~~~Ie~~ 596 (606)
+++++++.|++.+ +...|.+.+.++.+
T Consensus 198 Is~eal~~La~lS---~GdlR~AlnlLekL 224 (605)
T PRK05896 198 IEDNAIDKIADLA---DGSLRDGLSILDQL 224 (605)
T ss_pred CCHHHHHHHHHHc---CCcHHHHHHHHHHH
Confidence 8889999988874 22356666666653
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.3e-12 Score=149.83 Aligned_cols=190 Identities=23% Similarity=0.342 Sum_probs=122.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|+||+++++.|..++... + ....+||+||+|+|||++|+++|+.+.+.-.
T Consensus 20 IiGQe~~v~~L~~aI~~~--r----------------------------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~ 69 (725)
T PRK07133 20 IVGQDHIVQTLKNIIKSN--K----------------------------ISHAYLFSGPRGTGKTSVAKIFANALNCSHK 69 (725)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCcHHHHHHHHHHHhccccc
Confidence 899999999998888521 0 1245799999999999999999999865321
Q ss_pred e---cchhhhh---h--cCCc---c---cchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 355 I---ADATTLT---Q--AGYV---G---EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 355 ~---i~~s~l~---~--sg~v---G---~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
. ..|..+. . ..++ + .. ...++.+.+.....-..+...|+||||+|+|+.. .
T Consensus 70 ~~~~~pC~~C~~~~~~~~Dvieidaasn~~-vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~--------------A 134 (725)
T PRK07133 70 TDLLEPCQECIENVNNSLDIIEMDAASNNG-VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS--------------A 134 (725)
T ss_pred CCCCCchhHHHHhhcCCCcEEEEeccccCC-HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH--------------H
Confidence 0 0111110 0 0000 0 11 2235555554443323356789999999999877 8
Q ss_pred HHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhH
Q 007362 421 QQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVT 500 (606)
Q Consensus 421 q~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~ 500 (606)
+++||+.||. ....++||++++..
T Consensus 135 ~NALLKtLEE---------------------PP~~tifILaTte~----------------------------------- 158 (725)
T PRK07133 135 FNALLKTLEE---------------------PPKHVIFILATTEV----------------------------------- 158 (725)
T ss_pred HHHHHHHhhc---------------------CCCceEEEEEcCCh-----------------------------------
Confidence 9999999984 12344566554311
Q ss_pred HHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccC
Q 007362 501 SSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKAT 580 (606)
Q Consensus 501 ~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~ 580 (606)
..+.+.+++|+. .+.|.+++.+++.+.+... +...+ +.+++++++.|+..+
T Consensus 159 --------------~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~i-----------l~keg--I~id~eAl~~LA~lS- 209 (725)
T PRK07133 159 --------------HKIPLTILSRVQ-RFNFRRISEDEIVSRLEFI-----------LEKEN--ISYEKNALKLIAKLS- 209 (725)
T ss_pred --------------hhhhHHHHhhce-eEEccCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc-
Confidence 125567788884 8999999999988877642 11223 458888899988873
Q ss_pred CCCCChHHHHHHHHHH
Q 007362 581 AKNTGARGLRAILESI 596 (606)
Q Consensus 581 ~~~~GAR~L~~~Ie~~ 596 (606)
+.+.|.+.++++++
T Consensus 210 --~GslR~AlslLekl 223 (725)
T PRK07133 210 --SGSLRDALSIAEQV 223 (725)
T ss_pred --CCCHHHHHHHHHHH
Confidence 22356666666654
No 132
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1.8e-12 Score=147.28 Aligned_cols=193 Identities=24% Similarity=0.303 Sum_probs=124.5
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+.+++.|..++... ..+..+||+||+|+|||++|+++|+.+
T Consensus 22 ~f~d-liGq~~~v~~L~~~~~~g------------------------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 22 TFDD-LIGQEAMVRTLTNAFETG------------------------------RIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 3344 899999999998887411 012579999999999999999999998
Q ss_pred CCceeecc-------------hhhhhh-----------cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 350 NVPFVIAD-------------ATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~~~fi~i~-------------~s~l~~-----------sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
++.....+ |..+.. ....| -..++.+.+........+...||||||+|+++..
T Consensus 71 ~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~g---vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~ 147 (598)
T PRK09111 71 NYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTG---VDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA 147 (598)
T ss_pred CcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCC---HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH
Confidence 75432111 111110 11112 2235555554443333456789999999999877
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.++.||+.||. ...+++||++++.. +
T Consensus 148 --------------a~naLLKtLEe---------------------Pp~~~~fIl~tte~--~----------------- 173 (598)
T PRK09111 148 --------------AFNALLKTLEE---------------------PPPHVKFIFATTEI--R----------------- 173 (598)
T ss_pred --------------HHHHHHHHHHh---------------------CCCCeEEEEEeCCh--h-----------------
Confidence 89999999984 11234455543311 1
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
.+.+.+++|+ ..+.|.+++++++.+.+... +...+ +
T Consensus 174 ------------------------------kll~tI~SRc-q~~~f~~l~~~el~~~L~~i-----------~~keg--i 209 (598)
T PRK09111 174 ------------------------------KVPVTVLSRC-QRFDLRRIEADVLAAHLSRI-----------AAKEG--V 209 (598)
T ss_pred ------------------------------hhhHHHHhhe-eEEEecCCCHHHHHHHHHHH-----------HHHcC--C
Confidence 1334566777 47899999999888877642 12223 4
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.++++++++|++.+ +...|.+.+.+++.+
T Consensus 210 ~i~~eAl~lIa~~a---~Gdlr~al~~Ldkli 238 (598)
T PRK09111 210 EVEDEALALIARAA---EGSVRDGLSLLDQAI 238 (598)
T ss_pred CCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 58889999988874 234577777776653
No 133
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.45 E-value=2.1e-12 Score=136.20 Aligned_cols=195 Identities=25% Similarity=0.348 Sum_probs=120.4
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ ++|++++++.|..++... ...+++|+||||||||++|+++++.+
T Consensus 13 ~~~~-~~g~~~~~~~L~~~~~~~-------------------------------~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 13 LLED-ILGQDEVVERLSRAVDSP-------------------------------NLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred cHHH-hcCCHHHHHHHHHHHhCC-------------------------------CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455 689999999998777310 01479999999999999999999988
Q ss_pred C-----CceeecchhhhhhcC--Cc----------cc------chHHHHHHHHHhhhhhh-hhcCCCEEEEcccchhhhh
Q 007362 350 N-----VPFVIADATTLTQAG--YV----------GE------DVESILYKLLAQAEFNV-EAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 350 ~-----~~fi~i~~s~l~~sg--~v----------G~------~~~~~l~~lf~~a~~~l-~~a~~~ILfIDEiD~l~~~ 405 (606)
. .+++.+++.++.... +. +. .....++.+........ ..+...+|||||+|.+...
T Consensus 61 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~ 140 (337)
T PRK12402 61 YGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED 140 (337)
T ss_pred cCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH
Confidence 4 346777776653210 00 00 00112222221111110 0134579999999998766
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
.++.|+.+|+.. ..+..||++++..
T Consensus 141 --------------~~~~L~~~le~~---------------------~~~~~~Il~~~~~-------------------- 165 (337)
T PRK12402 141 --------------AQQALRRIMEQY---------------------SRTCRFIIATRQP-------------------- 165 (337)
T ss_pred --------------HHHHHHHHHHhc---------------------cCCCeEEEEeCCh--------------------
Confidence 788899998731 1112334433311
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+.+|+ ..+.|.+++.+++.+++... +...+ +
T Consensus 166 -----------------------------~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~-----------~~~~~--~ 202 (337)
T PRK12402 166 -----------------------------SKLIPPIRSRC-LPLFFRAPTDDELVDVLESI-----------AEAEG--V 202 (337)
T ss_pred -----------------------------hhCchhhcCCc-eEEEecCCCHHHHHHHHHHH-----------HHHcC--C
Confidence 01345566776 57889999999988777642 12234 3
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
.++++++++|++.. . ...|.+.+.++...
T Consensus 203 ~~~~~al~~l~~~~-~--gdlr~l~~~l~~~~ 231 (337)
T PRK12402 203 DYDDDGLELIAYYA-G--GDLRKAILTLQTAA 231 (337)
T ss_pred CCCHHHHHHHHHHc-C--CCHHHHHHHHHHHH
Confidence 48999999999874 2 33577766666443
No 134
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.44 E-value=3.4e-12 Score=133.98 Aligned_cols=195 Identities=18% Similarity=0.252 Sum_probs=123.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|...+... ..+..+||+||||+|||++|+++++.+
T Consensus 19 ~~~~-~~~~~~~~~~l~~~~~~~------------------------------~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 19 TIDE-CILPAADKETFKSIVKKG------------------------------RIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred cHHH-hcCcHHHHHHHHHHHhcC------------------------------CCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3444 899999999988777310 012456669999999999999999999
Q ss_pred CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 350 NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 350 ~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+.+++.+++.+ . . +. .....+........ ..+...||||||+|.+... +.++.|..+|+
T Consensus 68 ~~~~~~i~~~~-~-~--~~-~i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~-------------~~~~~L~~~le 126 (316)
T PHA02544 68 GAEVLFVNGSD-C-R--ID-FVRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA-------------DAQRHLRSFME 126 (316)
T ss_pred CccceEeccCc-c-c--HH-HHHHHHHHHHHhhc---ccCCCeEEEEECcccccCH-------------HHHHHHHHHHH
Confidence 88888888865 1 1 00 01111222111111 1135689999999988322 16777887787
Q ss_pred ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcc
Q 007362 430 GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVES 509 (606)
Q Consensus 430 g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~ 509 (606)
.. ..+..||++++..
T Consensus 127 ~~---------------------~~~~~~Ilt~n~~-------------------------------------------- 141 (316)
T PHA02544 127 AY---------------------SKNCSFIITANNK-------------------------------------------- 141 (316)
T ss_pred hc---------------------CCCceEEEEcCCh--------------------------------------------
Confidence 31 1234556655521
Q ss_pred hhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHH
Q 007362 510 SDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGL 589 (606)
Q Consensus 510 ~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L 589 (606)
..+.+.+.+|+. .+.|+.++.++...++...+ +.+...+...+ +.++++++.+|++..+. +.|.+
T Consensus 142 -----~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~----~~~~~~~~~~~--~~i~~~al~~l~~~~~~---d~r~~ 206 (316)
T PHA02544 142 -----NGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMI----VRCKGILEAEG--VEVDMKVLAALVKKNFP---DFRRT 206 (316)
T ss_pred -----hhchHHHHhhce-EEEeCCCCHHHHHHHHHHHH----HHHHHHHHhcC--CCCCHHHHHHHHHhcCC---CHHHH
Confidence 125567788884 77888889988888877533 33333333444 44799999999987553 23555
Q ss_pred HHHHHHH
Q 007362 590 RAILESI 596 (606)
Q Consensus 590 ~~~Ie~~ 596 (606)
-+.++..
T Consensus 207 l~~l~~~ 213 (316)
T PHA02544 207 INELQRY 213 (316)
T ss_pred HHHHHHH
Confidence 5445533
No 135
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=1.6e-12 Score=143.55 Aligned_cols=193 Identities=21% Similarity=0.287 Sum_probs=121.0
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+.+++.|..++... ..+..+||+||+|+|||++|+++|+.+
T Consensus 15 ~~~d-iiGq~~~v~~L~~~i~~~------------------------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 15 TFSE-ILGQDAVVAVLKNALRFN------------------------------RAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred CHHH-hcCcHHHHHHHHHHHHcC------------------------------CCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444 899999999998877411 012568999999999999999999988
Q ss_pred CCcee---------ecchhhhh-----------hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcc
Q 007362 350 NVPFV---------IADATTLT-----------QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESL 409 (606)
Q Consensus 350 ~~~fi---------~i~~s~l~-----------~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~ 409 (606)
...-- ..+|..+. .....|. ..++.+.+........+...||||||+|.++..
T Consensus 64 ~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~~gi---d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~---- 136 (451)
T PRK06305 64 NCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGI---EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE---- 136 (451)
T ss_pred cCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccccCCH---HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH----
Confidence 54210 00111110 0011111 223333333322222356789999999999877
Q ss_pred ccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccc
Q 007362 410 NISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRAN 489 (606)
Q Consensus 410 ~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~ 489 (606)
.++.|++.||. ...+++||++++..
T Consensus 137 ----------~~n~LLk~lEe---------------------p~~~~~~Il~t~~~------------------------ 161 (451)
T PRK06305 137 ----------AFNSLLKTLEE---------------------PPQHVKFFLATTEI------------------------ 161 (451)
T ss_pred ----------HHHHHHHHhhc---------------------CCCCceEEEEeCCh------------------------
Confidence 89999999984 11234555544310
Q ss_pred cccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCH
Q 007362 490 MRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTE 569 (606)
Q Consensus 490 ~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e 569 (606)
..+.+.+.+|+ .++.|.+++++++.+.+... ++..+ +.+++
T Consensus 162 -------------------------~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~-----------~~~eg--~~i~~ 202 (451)
T PRK06305 162 -------------------------HKIPGTILSRC-QKMHLKRIPEETIIDKLALI-----------AKQEG--IETSR 202 (451)
T ss_pred -------------------------HhcchHHHHhc-eEEeCCCCCHHHHHHHHHHH-----------HHHcC--CCCCH
Confidence 11456677777 47899999999988877642 11223 44889
Q ss_pred HHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 570 KALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 570 ~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
++++.|++.+ . .+.|.+.+.++...
T Consensus 203 ~al~~L~~~s-~--gdlr~a~~~Lekl~ 227 (451)
T PRK06305 203 EALLPIARAA-Q--GSLRDAESLYDYVV 227 (451)
T ss_pred HHHHHHHHHc-C--CCHHHHHHHHHHHH
Confidence 9999999874 2 23466666666543
No 136
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.44 E-value=1e-12 Score=154.89 Aligned_cols=191 Identities=20% Similarity=0.306 Sum_probs=128.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.++. |+|+++.++.+.+.+.+. .+.+++|+||||||||++|+.||+.+
T Consensus 185 ~ld~-~iGr~~ei~~~i~~l~r~-------------------------------~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 185 KIDP-VLGRDDEIRQMIDILLRR-------------------------------RQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCCc-ccCCHHHHHHHHHHHhcC-------------------------------CcCceeEECCCCCCHHHHHHHHHHHH
Confidence 3444 899999887776665311 13789999999999999999999876
Q ss_pred ----------CCceeecchhhhh-hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 350 ----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 350 ----------~~~fi~i~~s~l~-~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
+..++.++...+. ...|.|+- +..++.+++..... ..+.||||||||.+...... ..+.+
T Consensus 233 ~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~-e~~lk~ii~e~~~~---~~~~ILfIDEih~l~~~g~~-~~~~d---- 303 (852)
T TIGR03345 233 AAGDVPPALRNVRLLSLDLGLLQAGASVKGEF-ENRLKSVIDEVKAS---PQPIILFIDEAHTLIGAGGQ-AGQGD---- 303 (852)
T ss_pred hhCCCCccccCCeEEEeehhhhhcccccchHH-HHHHHHHHHHHHhc---CCCeEEEEeChHHhccCCCc-ccccc----
Confidence 2456777777655 23566665 66777888766421 25689999999999865321 11122
Q ss_pred HHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhH
Q 007362 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~ 498 (606)
+-+.|+..|+. ..+.+|.+++..+..+.+
T Consensus 304 -~~n~Lkp~l~~-----------------------G~l~~IgaTT~~e~~~~~--------------------------- 332 (852)
T TIGR03345 304 -AANLLKPALAR-----------------------GELRTIAATTWAEYKKYF--------------------------- 332 (852)
T ss_pred -HHHHhhHHhhC-----------------------CCeEEEEecCHHHHhhhh---------------------------
Confidence 44567777662 234566666643221111
Q ss_pred hHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 499 ~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
..+|+|.+||. +|.+.+++.++..+|+.. +.+.|.. ...+.+++++++.+++.
T Consensus 333 -----------------~~d~AL~rRf~-~i~v~eps~~~~~~iL~~----~~~~~e~-----~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 333 -----------------EKDPALTRRFQ-VVKVEEPDEETAIRMLRG----LAPVLEK-----HHGVLILDEAVVAAVEL 385 (852)
T ss_pred -----------------hccHHHHHhCe-EEEeCCCCHHHHHHHHHH----HHHhhhh-----cCCCeeCHHHHHHHHHH
Confidence 15789999995 899999999999999864 3333322 13466888888887765
Q ss_pred c
Q 007362 579 A 579 (606)
Q Consensus 579 a 579 (606)
+
T Consensus 386 s 386 (852)
T TIGR03345 386 S 386 (852)
T ss_pred c
Confidence 3
No 137
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.44 E-value=1.9e-12 Score=137.99 Aligned_cols=218 Identities=19% Similarity=0.299 Sum_probs=129.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~---- 350 (606)
|+||+++|.+|..++.++ ...+|||.|++|||||++||++++.+.
T Consensus 19 ivGq~~~k~al~~~~~~p-------------------------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~ 67 (350)
T CHL00081 19 IVGQEEMKLALILNVIDP-------------------------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEV 67 (350)
T ss_pred HhChHHHHHHHHHhccCC-------------------------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCc
Confidence 899999999998777421 126899999999999999999998873
Q ss_pred ---Cceeecchh-------hhhh--------------cCC----cccchHHH-----HHHHHHh-----hhhhhhhcCCC
Q 007362 351 ---VPFVIADAT-------TLTQ--------------AGY----VGEDVESI-----LYKLLAQ-----AEFNVEAAQQG 392 (606)
Q Consensus 351 ---~~fi~i~~s-------~l~~--------------sg~----vG~~~~~~-----l~~lf~~-----a~~~l~~a~~~ 392 (606)
.+|. .+.. .+.. ..+ .+..+... +...+.. ..+.+..++++
T Consensus 68 ~~~~pf~-~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~G 146 (350)
T CHL00081 68 VKDDPFN-SHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRG 146 (350)
T ss_pred cCCCCCC-CCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCC
Confidence 2332 0000 0000 000 01111110 1111111 13345567889
Q ss_pred EEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHH
Q 007362 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTIS 472 (606)
Q Consensus 393 ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~ 472 (606)
|||||||+.+.+. +|+.|++.|+...+.+...|.. .... .++++|+|.|..
T Consensus 147 iL~lDEInrL~~~--------------~Q~~LLeam~e~~~~ier~G~s-------~~~p-~rfiviaT~np~------- 197 (350)
T CHL00081 147 ILYVDEVNLLDDH--------------LVDILLDSAASGWNTVEREGIS-------IRHP-ARFVLVGSGNPE------- 197 (350)
T ss_pred EEEecChHhCCHH--------------HHHHHHHHHHhCCeEEeeCCee-------eecC-CCEEEEeccCcc-------
Confidence 9999999999988 9999999998655444333321 1122 245566555531
Q ss_pred hhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcC-HHHHHHHHhhhHHH--
Q 007362 473 ERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT-EDQLVKVLTEPKNA-- 549 (606)
Q Consensus 473 ~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls-~eel~~Il~~~l~~-- 549 (606)
...|.+.|++||...+.+..++ .++-.+|++.....
T Consensus 198 -----------------------------------------eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~ 236 (350)
T CHL00081 198 -----------------------------------------EGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDK 236 (350)
T ss_pred -----------------------------------------cCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhcccc
Confidence 1127888999999988888877 46666777653210
Q ss_pred ----H-----------HHHHHHHHhcCCcccccCHHHHHHHHHccCCCC-CChHHHHHHHHH
Q 007362 550 ----L-----------GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKN-TGARGLRAILES 595 (606)
Q Consensus 550 ----L-----------~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~-~GAR~L~~~Ie~ 595 (606)
+ ..++.. ....-.++.++++++++|++.+...+ -|-|.--.++.-
T Consensus 237 ~~~~~~~~~~~~~~~~~~~I~~-ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~ra 297 (350)
T CHL00081 237 NPQEFREKYEESQEELRSKIVA-AQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRA 297 (350)
T ss_pred ChhhhhhhhccccccCHHHHHH-HHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHH
Confidence 0 011111 11112346799999999988755433 245554444443
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.8e-12 Score=147.96 Aligned_cols=194 Identities=22% Similarity=0.337 Sum_probs=121.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|++ |+||+++++.|..++... + ...++||+||+|||||++|+++|+.+
T Consensus 14 ~f~~-liGq~~i~~~L~~~l~~~--------r----------------------l~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 14 RFDE-LVGQEAIATTLKNALISN--------R----------------------IAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred cHhh-ccChHHHHHHHHHHHHcC--------C----------------------CCceEEEECCCCCChHHHHHHHHHHh
Confidence 3444 899999999998888411 0 12679999999999999999999999
Q ss_pred CCceee----cchh------hh--------hhc-CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccc
Q 007362 350 NVPFVI----ADAT------TL--------TQA-GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (606)
Q Consensus 350 ~~~fi~----i~~s------~l--------~~s-g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~ 410 (606)
++.... ..|. .+ ... ...... ...++++.+.+...-..+...||||||+|+|...
T Consensus 63 ~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~----- 136 (620)
T PRK14948 63 NCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA----- 136 (620)
T ss_pred cCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH-----
Confidence 753210 0010 00 000 000111 2345566554433222345679999999999877
Q ss_pred cccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccc
Q 007362 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (606)
Q Consensus 411 ~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~ 490 (606)
.+++||+.||. ...+++||++++..
T Consensus 137 ---------a~naLLK~LEe---------------------Pp~~tvfIL~t~~~------------------------- 161 (620)
T PRK14948 137 ---------AFNALLKTLEE---------------------PPPRVVFVLATTDP------------------------- 161 (620)
T ss_pred ---------HHHHHHHHHhc---------------------CCcCeEEEEEeCCh-------------------------
Confidence 89999999994 12345566544311
Q ss_pred ccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH
Q 007362 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (606)
Q Consensus 491 ~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~ 570 (606)
..+.|.+++|+ ..+.|..++.+++...+... +...+ +.++++
T Consensus 162 ------------------------~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~i-----------a~keg--i~is~~ 203 (620)
T PRK14948 162 ------------------------QRVLPTIISRC-QRFDFRRIPLEAMVQHLSEI-----------AEKES--IEIEPE 203 (620)
T ss_pred ------------------------hhhhHHHHhhe-eEEEecCCCHHHHHHHHHHH-----------HHHhC--CCCCHH
Confidence 11445677777 47889999988877665531 11123 448888
Q ss_pred HHHHHHHccCCCCCChHHHHHHHHHH
Q 007362 571 ALRVIAKKATAKNTGARGLRAILESI 596 (606)
Q Consensus 571 al~~La~~a~~~~~GAR~L~~~Ie~~ 596 (606)
+++.|++.+ +.+.|.+.+++++.
T Consensus 204 al~~La~~s---~G~lr~A~~lLekl 226 (620)
T PRK14948 204 ALTLVAQRS---QGGLRDAESLLDQL 226 (620)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHH
Confidence 898888873 22346666666653
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.6e-12 Score=145.18 Aligned_cols=192 Identities=20% Similarity=0.289 Sum_probs=121.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce-
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF- 353 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f- 353 (606)
|+||+++++.|..++.+. + .+..+||+||+|+|||++|+++|+.+++.-
T Consensus 18 iiGqe~iv~~L~~~i~~~--~----------------------------i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~ 67 (563)
T PRK06647 18 LEGQDFVVETLKHSIESN--K----------------------------IANAYIFSGPRGVGKTSSARAFARCLNCVNG 67 (563)
T ss_pred ccCcHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHhhccccC
Confidence 899999999998888421 0 124599999999999999999999986421
Q ss_pred ------eec-chhhhhhc---C---Ccccc--hHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 354 ------VIA-DATTLTQA---G---YVGED--VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 354 ------i~i-~~s~l~~s---g---~vG~~--~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
-.+ +|..+... + +.|.. --..++.+.+........++..|+||||+|+++..
T Consensus 68 ~~~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~------------- 134 (563)
T PRK06647 68 PTPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS------------- 134 (563)
T ss_pred CCCCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-------------
Confidence 000 01111000 0 01110 01234444433332222356779999999999877
Q ss_pred HHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhH
Q 007362 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~ 498 (606)
.+++||+.||. ...+++||++++..
T Consensus 135 -a~naLLK~LEe---------------------pp~~~vfI~~tte~--------------------------------- 159 (563)
T PRK06647 135 -AFNALLKTIEE---------------------PPPYIVFIFATTEV--------------------------------- 159 (563)
T ss_pred -HHHHHHHhhcc---------------------CCCCEEEEEecCCh---------------------------------
Confidence 89999999983 12345666654310
Q ss_pred hHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 499 ~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
..+.+.+.+|+. .+.|.+++.+++.+.+... +...+ +.++++++++|++.
T Consensus 160 ----------------~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i-----------~~~eg--i~id~eAl~lLa~~ 209 (563)
T PRK06647 160 ----------------HKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKV-----------CLEDQ--IKYEDEALKWIAYK 209 (563)
T ss_pred ----------------HHhHHHHHHhce-EEEecCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHH
Confidence 014456677774 6889999999887776532 11223 55899999999987
Q ss_pred cCCCCCChHHHHHHHHHHH
Q 007362 579 ATAKNTGARGLRAILESIL 597 (606)
Q Consensus 579 a~~~~~GAR~L~~~Ie~~l 597 (606)
+ . -..|.+.+.+++.+
T Consensus 210 s-~--GdlR~alslLdkli 225 (563)
T PRK06647 210 S-T--GSVRDAYTLFDQVV 225 (563)
T ss_pred c-C--CCHHHHHHHHHHHH
Confidence 3 2 23577777776543
No 140
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.42 E-value=2.4e-12 Score=144.37 Aligned_cols=252 Identities=18% Similarity=0.276 Sum_probs=141.9
Q ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHH
Q 007362 266 EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (606)
Q Consensus 266 ~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAral 345 (606)
.+.+.+...|.|++.+|+.|..++... .. ... .....+ ....||||+|+||||||++|+++
T Consensus 196 ~l~~si~p~i~G~~~~k~~l~l~l~gg--------~~------~~~----~~~~~~-r~~~~vLL~G~pGtGKs~lar~l 256 (509)
T smart00350 196 RLSRSLAPSIYGHEDIKKAILLLLFGG--------VH------KNL----PDGMKI-RGDINILLLGDPGTAKSQLLKYV 256 (509)
T ss_pred HHHHhhCccccCcHHHHHHHHHHHhCC--------Cc------ccc----CCCccc-cccceEEEeCCCChhHHHHHHHH
Confidence 355666667999999999887776411 00 000 000011 12369999999999999999999
Q ss_pred HHHhCC-ceeec---chhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHH
Q 007362 346 ARHVNV-PFVIA---DATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQ 421 (606)
Q Consensus 346 A~~l~~-~fi~i---~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq 421 (606)
++.+.. .|... ++..+... .+ .+ ....-+....+.+..+++++++|||++++... .|
T Consensus 257 ~~~~~r~~~~~~~~~~~~~l~~~-~~-~~---~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~--------------~q 317 (509)
T smart00350 257 EKTAPRAVYTTGKGSSAVGLTAA-VT-RD---PETREFTLEGGALVLADNGVCCIDEFDKMDDS--------------DR 317 (509)
T ss_pred HHHcCcceEcCCCCCCcCCcccc-ce-Ec---cCcceEEecCccEEecCCCEEEEechhhCCHH--------------HH
Confidence 998853 33321 22122110 00 00 00000111123345568899999999999888 99
Q ss_pred HHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHH
Q 007362 422 QALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTS 501 (606)
Q Consensus 422 ~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~ 501 (606)
..|+++||...+++...|... .+. .++.+|+|+|... ++++...
T Consensus 318 ~~L~e~me~~~i~i~k~G~~~-------~l~-~~~~viAa~NP~~-------g~y~~~~--------------------- 361 (509)
T smart00350 318 TAIHEAMEQQTISIAKAGITT-------TLN-ARCSVLAAANPIG-------GRYDPKL--------------------- 361 (509)
T ss_pred HHHHHHHhcCEEEEEeCCEEE-------Eec-CCcEEEEEeCCCC-------cccCCCc---------------------
Confidence 999999997777665544221 122 3345566666431 1111110
Q ss_pred HHHhhhcchhhhhccCcccccccCCeEEEc-CCcCHHHHHHHHhhhHH-------------------HHHHHHHHHHhcC
Q 007362 502 SLLESVESSDLIAYGLIPEFVGRFPILVSL-TALTEDQLVKVLTEPKN-------------------ALGKQYKRLFSMN 561 (606)
Q Consensus 502 ~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f-~~Ls~eel~~Il~~~l~-------------------~L~k~~~~~~~~~ 561 (606)
.+.++ ..+.+++++|||.++.+ ...+.+.-.+|++..++ .++++|....+ .
T Consensus 362 ~~~~n--------~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar-~ 432 (509)
T smart00350 362 TPEEN--------IDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAR-E 432 (509)
T ss_pred Chhhc--------cCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHH-h
Confidence 11111 23889999999996655 55666555566554221 12223333222 1
Q ss_pred CcccccCHHHHHHHHHccCC-------------CCCChHHHHHHHHHHHHHH
Q 007362 562 NVKLHFTEKALRVIAKKATA-------------KNTGARGLRAILESILTEA 600 (606)
Q Consensus 562 ~i~l~i~e~al~~La~~a~~-------------~~~GAR~L~~~Ie~~l~~a 600 (606)
.+...+++++.++|.++... -..+.|.|..+|.-.-..|
T Consensus 433 ~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A 484 (509)
T smart00350 433 KIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHA 484 (509)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHH
Confidence 24456899999988765321 1235788877776443333
No 141
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.42 E-value=9.7e-13 Score=138.55 Aligned_cols=160 Identities=16% Similarity=0.216 Sum_probs=104.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh-cCCcccchH-----HHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ-AGYVGEDVE-----SILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~-sg~vG~~~~-----~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
.+|||.||||||||++|+.||+.++.+++++++...+. .+++|...- ..+. .|.......+...+.+||+||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~-~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQIT-EFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCccee-EEecCcchhHHhCCeEEEechh
Confidence 78999999999999999999999999999999885442 345565310 0000 0111111112235678999999
Q ss_pred chhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhccc
Q 007362 400 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDS 478 (606)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~ 478 (606)
|++.++ +++.|..+|| ++.+.+++.+.... ...++.+|+|.|..+.- +.
T Consensus 144 n~a~p~--------------~~~~L~~lLE~~~~l~i~~~~~~i~--------~hp~FrviAT~Np~g~G--------d~ 193 (327)
T TIGR01650 144 DAGRPD--------------VMFVIQRVLEAGGKLTLLDQNRVIR--------AHPAFRLFATANTIGLG--------DT 193 (327)
T ss_pred hccCHH--------------HHHHHHHHhccCCeEEECCCceEec--------CCCCeEEEEeeCCCCcC--------CC
Confidence 998887 9999999999 67777766543222 23356666666643100 00
Q ss_pred CCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhh
Q 007362 479 SIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (606)
Q Consensus 479 ~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~ 545 (606)
.=.|. --+.++..+++||-.++.+..++.++-.+|+..
T Consensus 194 ~G~y~-----------------------------Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 194 TGLYH-----------------------------GTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred Cccee-----------------------------eeecCCHHHHhheeeEeeCCCCCHHHHHHHHHh
Confidence 00000 012367889999987788888888877787754
No 142
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.7e-12 Score=144.98 Aligned_cols=191 Identities=20% Similarity=0.285 Sum_probs=117.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
|+||+.+++.|..++.+. + .+..+||+||+|||||++|+++|+.+++.-.
T Consensus 18 ivGQe~i~~~L~~~i~~~--r----------------------------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~ 67 (620)
T PRK14954 18 ITAQEHITHTIQNSLRMD--R----------------------------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRM 67 (620)
T ss_pred hcCcHHHHHHHHHHHHcC--C----------------------------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCc
Confidence 899999999998877411 0 1245999999999999999999999976311
Q ss_pred e----------cchh------hhhh---cC---Ccccc--hHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccc
Q 007362 355 I----------ADAT------TLTQ---AG---YVGED--VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (606)
Q Consensus 355 ~----------i~~s------~l~~---sg---~vG~~--~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~ 410 (606)
. -.|. .+.. .. +.+.+ -...++.+.+.....-..+...||||||+|+++..
T Consensus 68 ~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~----- 142 (620)
T PRK14954 68 IDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA----- 142 (620)
T ss_pred CCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-----
Confidence 0 0111 1100 00 11111 02334444444422222346679999999999877
Q ss_pred cccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccc
Q 007362 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (606)
Q Consensus 411 ~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~ 490 (606)
.++.||+.||. .....+||++++. .
T Consensus 143 ---------a~naLLK~LEe---------------------Pp~~tv~IL~t~~--~----------------------- 167 (620)
T PRK14954 143 ---------AFNAFLKTLEE---------------------PPPHAIFIFATTE--L----------------------- 167 (620)
T ss_pred ---------HHHHHHHHHhC---------------------CCCCeEEEEEeCC--h-----------------------
Confidence 89999999984 1123444443321 0
Q ss_pred ccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH
Q 007362 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (606)
Q Consensus 491 ~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~ 570 (606)
..+.+.+.+|. .++.|.+++.+++...+... +...+ +.++++
T Consensus 168 ------------------------~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i-----------~~~eg--i~I~~e 209 (620)
T PRK14954 168 ------------------------HKIPATIASRC-QRFNFKRIPLDEIQSQLQMI-----------CRAEG--IQIDAD 209 (620)
T ss_pred ------------------------hhhhHHHHhhc-eEEecCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 01344556666 58999999999887776532 11223 448899
Q ss_pred HHHHHHHccCCCCCChHHHHHHHHHH
Q 007362 571 ALRVIAKKATAKNTGARGLRAILESI 596 (606)
Q Consensus 571 al~~La~~a~~~~~GAR~L~~~Ie~~ 596 (606)
++++|++.+ +.+.|.+.+.++++
T Consensus 210 al~~La~~s---~Gdlr~al~eLeKL 232 (620)
T PRK14954 210 ALQLIARKA---QGSMRDAQSILDQV 232 (620)
T ss_pred HHHHHHHHh---CCCHHHHHHHHHHH
Confidence 999998874 23356666655543
No 143
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.42 E-value=1.9e-12 Score=137.78 Aligned_cols=225 Identities=19% Similarity=0.274 Sum_probs=130.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l----- 349 (606)
|+||+++|++|..++... ...+++|.|++|||||++++++++.+
T Consensus 6 ivgq~~~~~al~~~~~~~-------------------------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~ 54 (337)
T TIGR02030 6 IVGQDEMKLALLLNVIDP-------------------------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKA 54 (337)
T ss_pred cccHHHHHHHHHHHhcCC-------------------------------CCCeEEEEcCCCCCHHHHHHHHHHhhccccc
Confidence 899999999987666311 12789999999999999999999887
Q ss_pred --CCcee---------ecchhhh------------------h-----hcCCcccch-HHHH-HHHHHhhhhhhhhcCCCE
Q 007362 350 --NVPFV---------IADATTL------------------T-----QAGYVGEDV-ESIL-YKLLAQAEFNVEAAQQGM 393 (606)
Q Consensus 350 --~~~fi---------~i~~s~l------------------~-----~sg~vG~~~-~~~l-~~lf~~a~~~l~~a~~~I 393 (606)
+.+|- ..+|... + +..++|..+ ...+ ..-+....+.+..+++++
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~Gv 134 (337)
T TIGR02030 55 VAGCPFNSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGI 134 (337)
T ss_pred ccCCCCCCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCE
Confidence 22222 0001100 0 001222211 1100 000111233455678899
Q ss_pred EEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHh
Q 007362 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE 473 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~ 473 (606)
||||||+.+... +|+.|+++|+...+.+...|.. ...+ .++++|++.|..
T Consensus 135 L~lDEi~~L~~~--------------~Q~~Ll~~l~~g~~~v~r~G~~-------~~~~-~r~iviat~np~-------- 184 (337)
T TIGR02030 135 LYIDEVNLLEDH--------------LVDVLLDVAASGWNVVEREGIS-------IRHP-ARFVLVGSGNPE-------- 184 (337)
T ss_pred EEecChHhCCHH--------------HHHHHHHHHHhCCeEEEECCEE-------EEcC-CCEEEEeccccc--------
Confidence 999999999888 9999999998544333222211 1122 245556555421
Q ss_pred hhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCH-HHHHHHHhhhHHH---
Q 007362 474 RRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE-DQLVKVLTEPKNA--- 549 (606)
Q Consensus 474 ~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~-eel~~Il~~~l~~--- 549 (606)
...|.+.|++||...+.+..+.. ++..+|+......
T Consensus 185 ----------------------------------------eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~ 224 (337)
T TIGR02030 185 ----------------------------------------EGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDAD 224 (337)
T ss_pred ----------------------------------------cCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccC
Confidence 11278899999999888888775 6666777652211
Q ss_pred ---H-----------HHHHHHHHhcCCcccccCHHHHHHHHHccCCCCC-ChHHHHHHHHHHHHHHH
Q 007362 550 ---L-----------GKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNT-GARGLRAILESILTEAM 601 (606)
Q Consensus 550 ---L-----------~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~-GAR~L~~~Ie~~l~~al 601 (606)
+ .+++... ...-.++.+++++++++++.+...+. |-|..-.++.-.-..|.
T Consensus 225 ~~~~~~~~~~e~~~~~~~I~~a-~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aa 290 (337)
T TIGR02030 225 PHAFCEKWQTEQEALQAKIVNA-QNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAA 290 (337)
T ss_pred chhhhhhhhhhhhcCHHHHHHH-HHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHH
Confidence 0 1111111 11123466999999999876543222 44655555544433333
No 144
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.42 E-value=4.8e-13 Score=148.72 Aligned_cols=213 Identities=22% Similarity=0.365 Sum_probs=151.1
Q ss_pred CCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh--CCceeecchhhhh----hcCCcccchHHHHHHHH
Q 007362 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--NVPFVIADATTLT----QAGYVGEDVESILYKLL 379 (606)
Q Consensus 306 g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l--~~~fi~i~~s~l~----~sg~vG~~~~~~l~~lf 379 (606)
+..+....+.....++.....++++.|+|||||-.+||+|++.. ..||+.++|..+. ++.++|+..........
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~ 396 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARR 396 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchh
Confidence 44566677777788888888999999999999999999999877 4799999998543 44555555322222222
Q ss_pred HhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceee
Q 007362 380 AQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILF 458 (606)
Q Consensus 380 ~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~ 458 (606)
+.-...+..+.++++|+|||..+.-. .|..||++|+ +.++.+.+. . +.+|.+ +
T Consensus 397 kG~~g~~~~A~gGtlFldeIgd~p~~--------------~Qs~LLrVl~e~~v~p~g~~--------~-~~vdir---v 450 (606)
T COG3284 397 KGYKGKLEQADGGTLFLDEIGDMPLA--------------LQSRLLRVLQEGVVTPLGGT--------R-IKVDIR---V 450 (606)
T ss_pred ccccccceecCCCccHHHHhhhchHH--------------HHHHHHHHHhhCceeccCCc--------c-eeEEEE---E
Confidence 23345567789999999999999888 9999999998 555555433 1 345444 3
Q ss_pred eccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCH-H
Q 007362 459 ICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE-D 537 (606)
Q Consensus 459 I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~-e 537 (606)
| +++..||..++++++|+.++||..... .|.+++|.+ .
T Consensus 451 i-~ath~dl~~lv~~g~fredLyyrL~~~----------------------------------------~i~lP~lr~R~ 489 (606)
T COG3284 451 I-AATHRDLAQLVEQGRFREDLYYRLNAF----------------------------------------VITLPPLRERS 489 (606)
T ss_pred E-eccCcCHHHHHHcCCchHHHHHHhcCe----------------------------------------eeccCchhccc
Confidence 4 455578999999988877766643321 566666654 2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 538 QLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 538 el~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
|..-++... +++ .....+.++++++..|..+.|++|. |+|.++|+.+.
T Consensus 490 d~~~~l~~~-------~~~---~~~~~~~l~~~~~~~l~~~~WPGNi--rel~~v~~~~~ 537 (606)
T COG3284 490 DRIPLLDRI-------LKR---ENDWRLQLDDDALARLLAYRWPGNI--RELDNVIERLA 537 (606)
T ss_pred ccHHHHHHH-------HHH---ccCCCccCCHHHHHHHHhCCCCCcH--HHHHHHHHHHH
Confidence 222222221 111 1235688999999999999999998 99999999765
No 145
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.42 E-value=3.1e-12 Score=139.97 Aligned_cols=211 Identities=19% Similarity=0.331 Sum_probs=144.1
Q ss_pred CCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHh
Q 007362 305 SGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQ 381 (606)
Q Consensus 305 ~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~ 381 (606)
.+.++.+..+.+....++.....++++|++||||+++|++++... +.+|+.++|..+.+. ..-..+|..
T Consensus 142 ig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~--------~~~~~lfg~ 213 (441)
T PRK10365 142 VGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES--------LLESELFGH 213 (441)
T ss_pred EecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH--------HHHHHhcCC
Confidence 355666777777777777778899999999999999999999876 469999999865421 111122321
Q ss_pred h-----------hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeee-cCCCCcccCCCCCcE
Q 007362 382 A-----------EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVN-VPEKGARKHPRGDSI 449 (606)
Q Consensus 382 a-----------~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~-i~~~g~~~~~~~~~v 449 (606)
. .+.+..+.+++|||||||.|+.. +|..|+..++...+. +.. ...+
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~--------------~q~~l~~~l~~~~~~~~~~--------~~~~ 271 (441)
T PRK10365 214 EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM--------------MQVRLLRAIQEREVQRVGS--------NQTI 271 (441)
T ss_pred CCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH--------------HHHHHHHHHccCcEEeCCC--------Ccee
Confidence 1 12345567899999999999988 999999999843332 111 1111
Q ss_pred EEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-E
Q 007362 450 QMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-L 528 (606)
Q Consensus 450 ~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-i 528 (606)
.+ ++.+|++++. ++.+.+.+++ |.+.|+.|+.. .
T Consensus 272 ~~---~~rii~~t~~-~~~~~~~~~~-----------------------------------------~~~~l~~~l~~~~ 306 (441)
T PRK10365 272 SV---DVRLIAATHR-DLAAEVNAGR-----------------------------------------FRQDLYYRLNVVA 306 (441)
T ss_pred ee---ceEEEEeCCC-CHHHHHHcCC-----------------------------------------chHHHHHHhccce
Confidence 22 3445555543 4444443322 56677777765 6
Q ss_pred EEcCCcCH--HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 529 VSLTALTE--DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 529 I~f~~Ls~--eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
|.+++|.+ +|+..++..++..+.+++ ......+++++++.|..+.|.+|. |+|+++|++.+.
T Consensus 307 i~~ppLreR~~Di~~l~~~~l~~~~~~~------~~~~~~~~~~a~~~L~~~~wpgN~--reL~~~~~~~~~ 370 (441)
T PRK10365 307 IEVPSLRQRREDIPLLAGHFLQRFAERN------RKAVKGFTPQAMDLLIHYDWPGNI--RELENAVERAVV 370 (441)
T ss_pred ecCCChhhcchhHHHHHHHHHHHHHHHh------CCCCCCcCHHHHHHHHhCCCCCHH--HHHHHHHHHHHH
Confidence 77888875 688888776654443221 111234999999999999998888 999999999775
No 146
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.6e-12 Score=138.03 Aligned_cols=193 Identities=25% Similarity=0.360 Sum_probs=123.3
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ |+||+.+++.+...+.+. ..+.++||+||||+|||++|+++|+.+
T Consensus 15 ~~~~-iig~~~~~~~l~~~i~~~------------------------------~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 15 TFDD-VVGQSHITNTLLNAIENN------------------------------HLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred cHHh-cCCcHHHHHHHHHHHHcC------------------------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 799999999998877411 012689999999999999999999998
Q ss_pred CCceeecch-------hhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHH
Q 007362 350 NVPFVIADA-------TTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (606)
Q Consensus 350 ~~~fi~i~~-------s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~ 422 (606)
..+.....+ .++..... .. ...++.+++.+...-..+...||||||+|.+... .++
T Consensus 64 ~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~--------------~~~ 126 (367)
T PRK14970 64 NQPGYDDPNEDFSFNIFELDAASN--NS-VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA--------------AFN 126 (367)
T ss_pred cCCCCCCCCCCCCcceEEeccccC--CC-HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH--------------HHH
Confidence 653221111 01110000 11 2344455554322111235679999999998776 789
Q ss_pred HHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHH
Q 007362 423 ALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSS 502 (606)
Q Consensus 423 ~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ 502 (606)
.|++.|+. ...+.+||++++.
T Consensus 127 ~ll~~le~---------------------~~~~~~~Il~~~~-------------------------------------- 147 (367)
T PRK14970 127 AFLKTLEE---------------------PPAHAIFILATTE-------------------------------------- 147 (367)
T ss_pred HHHHHHhC---------------------CCCceEEEEEeCC--------------------------------------
Confidence 99999873 1123345544331
Q ss_pred HHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCC
Q 007362 503 LLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAK 582 (606)
Q Consensus 503 ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~ 582 (606)
...+.+.+.+|+ .++.|.+++++++..++... +...+ +.++++++++|++..
T Consensus 148 -----------~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~-----------~~~~g--~~i~~~al~~l~~~~--- 199 (367)
T PRK14970 148 -----------KHKIIPTILSRC-QIFDFKRITIKDIKEHLAGI-----------AVKEG--IKFEDDALHIIAQKA--- 199 (367)
T ss_pred -----------cccCCHHHHhcc-eeEecCCccHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHhC---
Confidence 112456677777 47899999999988877642 11234 458999999999873
Q ss_pred CCChHHHHHHHHHHH
Q 007362 583 NTGARGLRAILESIL 597 (606)
Q Consensus 583 ~~GAR~L~~~Ie~~l 597 (606)
+.+.|.+.+.+++++
T Consensus 200 ~gdlr~~~~~lekl~ 214 (367)
T PRK14970 200 DGALRDALSIFDRVV 214 (367)
T ss_pred CCCHHHHHHHHHHHH
Confidence 234677777777665
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.41 E-value=3.7e-12 Score=148.06 Aligned_cols=186 Identities=22% Similarity=0.344 Sum_probs=123.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l----- 349 (606)
++|.+...+.+.+.+.+. .+.++||+||||||||++|+.+|..+
T Consensus 188 liGR~~ei~~~i~iL~r~-------------------------------~~~n~LLvGppGvGKT~lae~la~~i~~~~v 236 (758)
T PRK11034 188 LIGREKELERAIQVLCRR-------------------------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDV 236 (758)
T ss_pred CcCCCHHHHHHHHHHhcc-------------------------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 899999999888777411 13789999999999999999999764
Q ss_pred -----CCceeecchhhhhh-cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHH
Q 007362 350 -----NVPFVIADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (606)
Q Consensus 350 -----~~~fi~i~~s~l~~-sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~ 423 (606)
+..++.++...+.. ..|.|+. +..++.++..... ..++||||||||.+........ ...++.+.
T Consensus 237 P~~l~~~~~~~l~~~~llaG~~~~Ge~-e~rl~~l~~~l~~----~~~~ILfIDEIh~L~g~g~~~~-----g~~d~~nl 306 (758)
T PRK11034 237 PEVMADCTIYSLDIGSLLAGTKYRGDF-EKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASG-----GQVDAANL 306 (758)
T ss_pred CchhcCCeEEeccHHHHhcccchhhhH-HHHHHHHHHHHHh----cCCCEEEeccHHHHhccCCCCC-----cHHHHHHH
Confidence 34555666555442 3455654 5566667665432 3678999999999876532111 11235566
Q ss_pred HHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHH
Q 007362 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (606)
Q Consensus 424 LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~l 503 (606)
|..+++. ..+.+|.+++..+..+.+.
T Consensus 307 Lkp~L~~-----------------------g~i~vIgATt~~E~~~~~~------------------------------- 332 (758)
T PRK11034 307 IKPLLSS-----------------------GKIRVIGSTTYQEFSNIFE------------------------------- 332 (758)
T ss_pred HHHHHhC-----------------------CCeEEEecCChHHHHHHhh-------------------------------
Confidence 6666551 2355677776543222211
Q ss_pred HhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 504 LESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 504 l~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
.+|.|.+||+ .|.+.+++.++..+|+... ...|.. ...+.+++++++.+++.
T Consensus 333 -------------~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~----~~~ye~-----~h~v~i~~~al~~a~~l 384 (758)
T PRK11034 333 -------------KDRALARRFQ-KIDITEPSIEETVQIINGL----KPKYEA-----HHDVRYTAKAVRAAVEL 384 (758)
T ss_pred -------------ccHHHHhhCc-EEEeCCCCHHHHHHHHHHH----HHHhhh-----ccCCCcCHHHHHHHHHH
Confidence 5788999996 7999999999999998853 333322 23456888888776654
No 148
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.41 E-value=7e-12 Score=133.39 Aligned_cols=195 Identities=22% Similarity=0.339 Sum_probs=118.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++ |+||+++++.|..++... . .+..+||+||||+|||++|+++|+.+.
T Consensus 13 ~~~-iig~~~~~~~l~~~~~~~--------~----------------------~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 13 FED-VIGQEHIVQTLKNAIKNG--------R----------------------IAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred Hhh-ccCcHHHHHHHHHHHHcC--------C----------------------CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444 799999999998877411 0 125689999999999999999999985
Q ss_pred Cceee--cc------hhhhhhc---C---Cccc--chHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccC
Q 007362 351 VPFVI--AD------ATTLTQA---G---YVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (606)
Q Consensus 351 ~~fi~--i~------~s~l~~s---g---~vG~--~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~ 414 (606)
..-.. .. |..+... . +.+. .....++.+++.+......+...||+|||+|.+...
T Consensus 62 ~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--------- 132 (355)
T TIGR02397 62 CQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--------- 132 (355)
T ss_pred CCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH---------
Confidence 32100 00 0000000 0 0010 012234455554432222345679999999998776
Q ss_pred cchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccccccc
Q 007362 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGV 494 (606)
Q Consensus 415 ~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~ 494 (606)
.++.|++.||. ...+++||++++. +++
T Consensus 133 -----~~~~Ll~~le~---------------------~~~~~~lIl~~~~--~~~------------------------- 159 (355)
T TIGR02397 133 -----AFNALLKTLEE---------------------PPEHVVFILATTE--PHK------------------------- 159 (355)
T ss_pred -----HHHHHHHHHhC---------------------CccceeEEEEeCC--HHH-------------------------
Confidence 89999999974 1123445554431 111
Q ss_pred chhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHH
Q 007362 495 TDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRV 574 (606)
Q Consensus 495 ~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~ 574 (606)
+.+.+.+|+ ..+.|.+++.+++.+++... ++..+ +.++++++++
T Consensus 160 ----------------------l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~-----------~~~~g--~~i~~~a~~~ 203 (355)
T TIGR02397 160 ----------------------IPATILSRC-QRFDFKRIPLEDIVERLKKI-----------LDKEG--IKIEDEALEL 203 (355)
T ss_pred ----------------------HHHHHHhhe-eEEEcCCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHH
Confidence 223455666 47889999999988887643 11223 4588899999
Q ss_pred HHHccCCCCCChHHHHHHHHHHH
Q 007362 575 IAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 575 La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
|++.. . .+.|.+.+.+++..
T Consensus 204 l~~~~-~--g~~~~a~~~lekl~ 223 (355)
T TIGR02397 204 IARAA-D--GSLRDALSLLDQLI 223 (355)
T ss_pred HHHHc-C--CChHHHHHHHHHHH
Confidence 98863 2 23466666666543
No 149
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.3e-12 Score=139.91 Aligned_cols=192 Identities=26% Similarity=0.362 Sum_probs=119.6
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+||+++++.|..++... + ....+||+||+|+|||++|+++|+.++
T Consensus 15 f~d-iiGq~~i~~~L~~~i~~~--~----------------------------i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 15 FKE-VIGQEIVVRILKNAVKLQ--R----------------------------VSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHH-ccChHHHHHHHHHHHHcC--C----------------------------CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344 899999999998888411 0 014478999999999999999999986
Q ss_pred Cc-------eee-cchhhhhh-----------cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccc
Q 007362 351 VP-------FVI-ADATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (606)
Q Consensus 351 ~~-------fi~-i~~s~l~~-----------sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~ 411 (606)
+. .-. .+|..+.. +...|. ..++.+.+........+...|+||||+|+++..
T Consensus 64 c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas~~gv---d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~------ 134 (486)
T PRK14953 64 CLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGI---DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE------ 134 (486)
T ss_pred CcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCccCCCH---HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH------
Confidence 41 100 11111111 001121 223344333332222346689999999999877
Q ss_pred ccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccc
Q 007362 412 SRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMR 491 (606)
Q Consensus 412 ~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~ 491 (606)
.+++|++.|+. ...+.+||++++. +.+
T Consensus 135 --------a~naLLk~LEe---------------------pp~~~v~Il~tt~--~~k---------------------- 161 (486)
T PRK14953 135 --------AFNALLKTLEE---------------------PPPRTIFILCTTE--YDK---------------------- 161 (486)
T ss_pred --------HHHHHHHHHhc---------------------CCCCeEEEEEECC--HHH----------------------
Confidence 89999999984 1123344444331 111
Q ss_pred cccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHH
Q 007362 492 AGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKA 571 (606)
Q Consensus 492 ~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~a 571 (606)
+.+.+.+|+. .+.|.+++.+++...+... +...+ +.+++++
T Consensus 162 -------------------------l~~tI~SRc~-~i~f~~ls~~el~~~L~~i-----------~k~eg--i~id~~a 202 (486)
T PRK14953 162 -------------------------IPPTILSRCQ-RFIFSKPTKEQIKEYLKRI-----------CNEEK--IEYEEKA 202 (486)
T ss_pred -------------------------HHHHHHHhce-EEEcCCCCHHHHHHHHHHH-----------HHHcC--CCCCHHH
Confidence 2345566663 7899999999988777642 11234 4589999
Q ss_pred HHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 572 LRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 572 l~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
+++|++.+ +.+.|.+.+.+++.+
T Consensus 203 l~~La~~s---~G~lr~al~~Ldkl~ 225 (486)
T PRK14953 203 LDLLAQAS---EGGMRDAASLLDQAS 225 (486)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHH
Confidence 99999873 234677777776653
No 150
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=5.7e-13 Score=144.30 Aligned_cols=180 Identities=24% Similarity=0.377 Sum_probs=111.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~---- 350 (606)
|+||+.||++|..+..- ..|+||+||||||||++|+.+...|-
T Consensus 181 V~GQ~~AKrAleiAAAG---------------------------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~ 227 (490)
T COG0606 181 VKGQEQAKRALEIAAAG---------------------------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSI 227 (490)
T ss_pred hcCcHHHHHHHHHHHhc---------------------------------CCcEEEecCCCCchHHhhhhhcccCCCCCh
Confidence 99999999999887741 28999999999999999999987761
Q ss_pred CceeecchhhhhhcCCcccch----------------HHHHHHHHH----hhhhhhhhcCCCEEEEcccchhhhhhhccc
Q 007362 351 VPFVIADATTLTQAGYVGEDV----------------ESILYKLLA----QAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~----------------~~~l~~lf~----~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~ 410 (606)
..+++++.-.. +.|... +.....+.. ..++.+..++++||||||+-.+..+
T Consensus 228 ~E~lE~s~I~s----~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~----- 298 (490)
T COG0606 228 PEALEVSAIHS----LAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS----- 298 (490)
T ss_pred HHHHHHHHHhh----hcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH-----
Confidence 11222221100 111100 000111111 1234466789999999999988776
Q ss_pred cccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccc
Q 007362 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (606)
Q Consensus 411 ~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~ 490 (606)
+++.|.+.||.+.+.|...+.......+ +.+|++.|.- -...++.+...
T Consensus 299 ---------iLe~LR~PLE~g~i~IsRa~~~v~ypa~--------Fqlv~AmNpc------------pcG~~~~~~~~-- 347 (490)
T COG0606 299 ---------ILEALREPLENGKIIISRAGSKVTYPAR--------FQLVAAMNPC------------PCGNLGAPLRR-- 347 (490)
T ss_pred ---------HHHHHhCccccCcEEEEEcCCeeEEeee--------eEEhhhcCCC------------CccCCCCCCCC--
Confidence 9999999999877777766554444433 4444444421 01111212110
Q ss_pred ccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHH
Q 007362 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQL 539 (606)
Q Consensus 491 ~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel 539 (606)
=.........++++ +.-+|++|||..+..+.++..++
T Consensus 348 --C~c~~~~~~~Y~~k----------lSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 348 --CPCSPRQIKRYLNK----------LSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred --cCCCHHHHHHHHHH----------hhHHHHhhhhheecccCCCHHHh
Confidence 00223344445554 67899999999999998875443
No 151
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.40 E-value=6.5e-12 Score=125.12 Aligned_cols=166 Identities=17% Similarity=0.298 Sum_probs=108.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
.+++|+||+|||||++|+++++.+ +.+++.+++..+... . ..++... ....+|||||+|.+
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~-------~---~~~~~~~------~~~~lLvIDdi~~l 102 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA-------D---PEVLEGL------EQADLVCLDDVEAI 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh-------H---HHHHhhc------ccCCEEEEeChhhh
Confidence 789999999999999999999887 467888888876521 0 1122211 13469999999988
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf 482 (606)
.... ..+..|..+++... + .+..+|++++... .+
T Consensus 103 ~~~~------------~~~~~L~~~l~~~~-------------------~-~~~~iIits~~~~-~~------------- 136 (226)
T TIGR03420 103 AGQP------------EWQEALFHLYNRVR-------------------E-AGGRLLIAGRAAP-AQ------------- 136 (226)
T ss_pred cCCh------------HHHHHHHHHHHHHH-------------------H-cCCeEEEECCCCh-HH-------------
Confidence 6541 03667777765210 0 1112344444210 00
Q ss_pred CcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
-....+.|.+|+. ..+.+++++.+++..++... +..
T Consensus 137 -------------------------------~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~-----------~~~ 174 (226)
T TIGR03420 137 -------------------------------LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR-----------AAR 174 (226)
T ss_pred -------------------------------CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH-----------HHH
Confidence 0001245666663 58999999999888887532 111
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~a 600 (606)
. .+.++++++++|++. |..|. |+|+++|+++-..+
T Consensus 175 ~--~~~~~~~~l~~L~~~-~~gn~--r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 175 R--GLQLPDEVADYLLRH-GSRDM--GSLMALLDALDRAS 209 (226)
T ss_pred c--CCCCCHHHHHHHHHh-ccCCH--HHHHHHHHHHHHHH
Confidence 2 356999999999995 78777 89999998865433
No 152
>PRK04195 replication factor C large subunit; Provisional
Probab=99.39 E-value=6e-12 Score=140.27 Aligned_cols=113 Identities=30% Similarity=0.464 Sum_probs=77.3
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+|++++++.|...+.... .+ .+..++||+||||||||++|++||+.++
T Consensus 13 l~d-lvg~~~~~~~l~~~l~~~~---------~g------------------~~~~~lLL~GppG~GKTtla~ala~el~ 64 (482)
T PRK04195 13 LSD-VVGNEKAKEQLREWIESWL---------KG------------------KPKKALLLYGPPGVGKTSLAHALANDYG 64 (482)
T ss_pred HHH-hcCCHHHHHHHHHHHHHHh---------cC------------------CCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 344 8999999999988885321 00 0137899999999999999999999999
Q ss_pred CceeecchhhhhhcCCcccchHHHHHHHHHhhhhh--hhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHH
Q 007362 351 VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN--VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKML 428 (606)
Q Consensus 351 ~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~--l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~L 428 (606)
.+++.+++++... ...+..+...+... +......||||||+|.+.... ....+++|++++
T Consensus 65 ~~~ielnasd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l 126 (482)
T PRK04195 65 WEVIELNASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELI 126 (482)
T ss_pred CCEEEEccccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHH
Confidence 9999999876431 12222322222111 111256799999999886521 112678888887
Q ss_pred h
Q 007362 429 E 429 (606)
Q Consensus 429 e 429 (606)
+
T Consensus 127 ~ 127 (482)
T PRK04195 127 K 127 (482)
T ss_pred H
Confidence 6
No 153
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=8.5e-12 Score=142.12 Aligned_cols=191 Identities=22% Similarity=0.297 Sum_probs=116.6
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+||+++++.|..++... . ....+||+||+|+|||++|+++|+.++
T Consensus 15 ~~e-iiGq~~~~~~L~~~i~~~--------~----------------------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 15 FAE-LVGQEHVVQTLRNAIAEG--------R----------------------VAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHH-hcCCHHHHHHHHHHHHhC--------C----------------------CceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444 899999999998877411 0 014579999999999999999999986
Q ss_pred Cceeec---c------hhhhhh-----------cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccc
Q 007362 351 VPFVIA---D------ATTLTQ-----------AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLN 410 (606)
Q Consensus 351 ~~fi~i---~------~s~l~~-----------sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~ 410 (606)
+....- . |..+.. ....+ ...++++.+.....-..+...||||||+|+|..+
T Consensus 64 c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~---vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~----- 135 (585)
T PRK14950 64 CTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTS---VDDAREIIERVQFRPALARYKVYIIDEVHMLSTA----- 135 (585)
T ss_pred CCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCC---HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH-----
Confidence 422100 0 111110 01111 1223444333222212246689999999999876
Q ss_pred cccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccc
Q 007362 411 ISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANM 490 (606)
Q Consensus 411 ~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~ 490 (606)
.++.||+.||. ...+.+||++++. +++
T Consensus 136 ---------a~naLLk~LEe---------------------pp~~tv~Il~t~~--~~k--------------------- 162 (585)
T PRK14950 136 ---------AFNALLKTLEE---------------------PPPHAIFILATTE--VHK--------------------- 162 (585)
T ss_pred ---------HHHHHHHHHhc---------------------CCCCeEEEEEeCC--hhh---------------------
Confidence 89999999984 1123445544321 111
Q ss_pred ccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH
Q 007362 491 RAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (606)
Q Consensus 491 ~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~ 570 (606)
+.+.+.+|+ ..+.|.+++.+++..++... +...+ +.++++
T Consensus 163 --------------------------ll~tI~SR~-~~i~f~~l~~~el~~~L~~~-----------a~~eg--l~i~~e 202 (585)
T PRK14950 163 --------------------------VPATILSRC-QRFDFHRHSVADMAAHLRKI-----------AAAEG--INLEPG 202 (585)
T ss_pred --------------------------hhHHHHhcc-ceeeCCCCCHHHHHHHHHHH-----------HHHcC--CCCCHH
Confidence 234455665 36789999998877776542 11223 448888
Q ss_pred HHHHHHHccCCCCCChHHHHHHHHHH
Q 007362 571 ALRVIAKKATAKNTGARGLRAILESI 596 (606)
Q Consensus 571 al~~La~~a~~~~~GAR~L~~~Ie~~ 596 (606)
++++|++.+ . ...|.+.+.|+++
T Consensus 203 al~~La~~s-~--Gdlr~al~~LekL 225 (585)
T PRK14950 203 ALEAIARAA-T--GSMRDAENLLQQL 225 (585)
T ss_pred HHHHHHHHc-C--CCHHHHHHHHHHH
Confidence 888888763 2 2456777777664
No 154
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=6.2e-12 Score=143.55 Aligned_cols=194 Identities=23% Similarity=0.350 Sum_probs=123.5
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+||+++++.|..++... + .+..+||+||+|+|||++|+++|+.++
T Consensus 16 f~~-viGq~~~~~~L~~~i~~~--~----------------------------l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 16 FES-VVGQEALTTTLKNAIATN--K----------------------------LAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHH-hcCcHHHHHHHHHHHHcC--C----------------------------CCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 444 899999999998888411 0 124589999999999999999999986
Q ss_pred Cceeec---------chhhhhhc---C---Cccc--chHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccccc
Q 007362 351 VPFVIA---------DATTLTQA---G---YVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISR 413 (606)
Q Consensus 351 ~~fi~i---------~~s~l~~s---g---~vG~--~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~ 413 (606)
+..... +|..+... . +.+. .....++.+...+......+...|+||||+|.++..
T Consensus 65 c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-------- 136 (614)
T PRK14971 65 CQNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-------- 136 (614)
T ss_pred CCCCCCCCCCCCcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH--------
Confidence 421110 01111000 0 0011 002334455544432222346679999999999877
Q ss_pred CcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccc
Q 007362 414 DVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAG 493 (606)
Q Consensus 414 ~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~ 493 (606)
.+++||+.||. ...+.+||++++.
T Consensus 137 ------a~naLLK~LEe---------------------pp~~tifIL~tt~----------------------------- 160 (614)
T PRK14971 137 ------AFNAFLKTLEE---------------------PPSYAIFILATTE----------------------------- 160 (614)
T ss_pred ------HHHHHHHHHhC---------------------CCCCeEEEEEeCC-----------------------------
Confidence 89999999984 1233455554431
Q ss_pred cchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHH
Q 007362 494 VTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALR 573 (606)
Q Consensus 494 ~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~ 573 (606)
...+.+.+.+|+ .++.|.+++.+++...+... +...+ +.+++++++
T Consensus 161 --------------------~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~i-----------a~~eg--i~i~~~al~ 206 (614)
T PRK14971 161 --------------------KHKILPTILSRC-QIFDFNRIQVADIVNHLQYV-----------ASKEG--ITAEPEALN 206 (614)
T ss_pred --------------------chhchHHHHhhh-heeecCCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHH
Confidence 112556777787 47999999999988777642 11234 558999999
Q ss_pred HHHHccCCCCCChHHHHHHHHHH
Q 007362 574 VIAKKATAKNTGARGLRAILESI 596 (606)
Q Consensus 574 ~La~~a~~~~~GAR~L~~~Ie~~ 596 (606)
+|++.+ +.+.|.+.+.+++.
T Consensus 207 ~La~~s---~gdlr~al~~Lekl 226 (614)
T PRK14971 207 VIAQKA---DGGMRDALSIFDQV 226 (614)
T ss_pred HHHHHc---CCCHHHHHHHHHHH
Confidence 999874 23457676666654
No 155
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.38 E-value=9.2e-12 Score=146.96 Aligned_cols=186 Identities=25% Similarity=0.339 Sum_probs=128.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV----- 349 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l----- 349 (606)
|+|.++.++.+.+.+.+. .+.+++|+||||||||++|+.||..+
T Consensus 181 ~igr~~ei~~~~~~L~r~-------------------------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~v 229 (821)
T CHL00095 181 VIGREKEIERVIQILGRR-------------------------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDV 229 (821)
T ss_pred CCCcHHHHHHHHHHHccc-------------------------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 899999999998887411 23789999999999999999999876
Q ss_pred -----CCceeecchhhhh-hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHH
Q 007362 350 -----NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (606)
Q Consensus 350 -----~~~fi~i~~s~l~-~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~ 423 (606)
+.+++.+++..+. .+.|.|+- +..++.+++.+... .+.||||||||.+...... +.+. .+.+.
T Consensus 230 p~~l~~~~i~~l~~~~l~ag~~~~ge~-e~rl~~i~~~~~~~----~~~ILfiDEih~l~~~g~~-~g~~-----~~a~l 298 (821)
T CHL00095 230 PDILEDKLVITLDIGLLLAGTKYRGEF-EERLKRIFDEIQEN----NNIILVIDEVHTLIGAGAA-EGAI-----DAANI 298 (821)
T ss_pred ChhhcCCeEEEeeHHHHhccCCCccHH-HHHHHHHHHHHHhc----CCeEEEEecHHHHhcCCCC-CCcc-----cHHHH
Confidence 3678899988765 34677765 66778888766432 5679999999998765321 1111 26777
Q ss_pred HHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHH
Q 007362 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (606)
Q Consensus 424 LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~l 503 (606)
|...|.. ..+.+|.+++.....+.+.
T Consensus 299 Lkp~l~r-----------------------g~l~~IgaTt~~ey~~~ie------------------------------- 324 (821)
T CHL00095 299 LKPALAR-----------------------GELQCIGATTLDEYRKHIE------------------------------- 324 (821)
T ss_pred hHHHHhC-----------------------CCcEEEEeCCHHHHHHHHh-------------------------------
Confidence 7777652 2345566666432222111
Q ss_pred HhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHcc
Q 007362 504 LESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (606)
Q Consensus 504 l~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a 579 (606)
..|.|..||. .|.+..++.++...|++. +...|.+. + ++.++++++..++..+
T Consensus 325 -------------~D~aL~rRf~-~I~v~ep~~~e~~aILr~----l~~~~e~~---~--~v~i~deal~~i~~ls 377 (821)
T CHL00095 325 -------------KDPALERRFQ-PVYVGEPSVEETIEILFG----LRSRYEKH---H--NLSISDKALEAAAKLS 377 (821)
T ss_pred -------------cCHHHHhcce-EEecCCCCHHHHHHHHHH----HHHHHHHH---c--CCCCCHHHHHHHHHHh
Confidence 3577888885 578888899998888775 33333332 1 2337888888777653
No 156
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=1e-11 Score=124.56 Aligned_cols=161 Identities=16% Similarity=0.251 Sum_probs=109.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
.+++|+||+|||||++|+++++.+ +..++.+++..+... +.. .....+|||||+|.+
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~--------------~~~------~~~~~~liiDdi~~l 102 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA--------------FDF------DPEAELYAVDDVERL 102 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH--------------Hhh------cccCCEEEEeChhhc
Confidence 689999999999999999999876 557777777654311 000 113579999999988
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf 482 (606)
... .+..|+.+++... .....++|++++...
T Consensus 103 ~~~--------------~~~~L~~~~~~~~-------------------~~~~~~vl~~~~~~~---------------- 133 (227)
T PRK08903 103 DDA--------------QQIALFNLFNRVR-------------------AHGQGALLVAGPAAP---------------- 133 (227)
T ss_pred Cch--------------HHHHHHHHHHHHH-------------------HcCCcEEEEeCCCCH----------------
Confidence 665 6778888876311 111222344443210
Q ss_pred CcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
....+.+++++|+. ..+.++++++++...++.+. +..
T Consensus 134 ------------------------------~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~-----------~~~ 172 (227)
T PRK08903 134 ------------------------------LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA-----------AAE 172 (227)
T ss_pred ------------------------------HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH-----------HHH
Confidence 01114567788873 58999999998776666531 111
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al 601 (606)
. .+.++++++++|++ .|..|+ |.|..+|+.+-..++
T Consensus 173 ~--~v~l~~~al~~L~~-~~~gn~--~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 173 R--GLQLADEVPDYLLT-HFRRDM--PSLMALLDALDRYSL 208 (227)
T ss_pred c--CCCCCHHHHHHHHH-hccCCH--HHHHHHHHHHHHHHH
Confidence 2 36699999999999 578877 899999998765553
No 157
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4.7e-12 Score=136.24 Aligned_cols=170 Identities=18% Similarity=0.218 Sum_probs=117.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~ 404 (606)
++++|||||||||||++.-|+|+.|+..++.++.+++.. ...++.++...+ ..+||+|.+||....
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--------n~dLr~LL~~t~------~kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--------DSDLRHLLLATP------NKSILLIEDIDCSFD 300 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC--------cHHHHHHHHhCC------CCcEEEEeecccccc
Confidence 388999999999999999999999999999888876542 123778776665 569999999997644
Q ss_pred hhhcccc----ccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 405 KAESLNI----SRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 405 ~r~~~~~----~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
.+..... ........+++.||..+||--- . -+.--|+|+|+|..
T Consensus 301 l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwS---s--------------cg~ERIivFTTNh~--------------- 348 (457)
T KOG0743|consen 301 LRERRKKKKENFEGDLSRVTLSGLLNFLDGLWS---S--------------CGDERIIVFTTNHK--------------- 348 (457)
T ss_pred cccccccccccccCCcceeehHHhhhhhccccc---c--------------CCCceEEEEecCCh---------------
Confidence 2221111 0101123578899999997221 1 11245778888853
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccc--cCCeEEEcCCcCHHHHHHHHhhhHH-----HHHHH
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVG--RFPILVSLTALTEDQLVKVLTEPKN-----ALGKQ 553 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~--R~d~iI~f~~Ls~eel~~Il~~~l~-----~L~k~ 553 (606)
+.|+|+|+. |+|..|.+.-.+.+.+..++.+++. .|..+
T Consensus 349 ----------------------------------EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~e 394 (457)
T KOG0743|consen 349 ----------------------------------EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDE 394 (457)
T ss_pred ----------------------------------hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHH
Confidence 237888887 9999999999999999999988763 35555
Q ss_pred HHHHHhcCCcccccCHH-HHHHHHHc
Q 007362 554 YKRLFSMNNVKLHFTEK-ALRVIAKK 578 (606)
Q Consensus 554 ~~~~~~~~~i~l~i~e~-al~~La~~ 578 (606)
+.+... +..++++ +.+.|+.+
T Consensus 395 ie~l~~----~~~~tPA~V~e~lm~~ 416 (457)
T KOG0743|consen 395 IERLIE----ETEVTPAQVAEELMKN 416 (457)
T ss_pred HHHHhh----cCccCHHHHHHHHhhc
Confidence 555322 2335554 44445544
No 158
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.33 E-value=1.8e-13 Score=125.50 Aligned_cols=94 Identities=30% Similarity=0.341 Sum_probs=58.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchh-hhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT-TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s-~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
|+||+|+||+|||++|+++|+.++..|.++.++ ++..+++.|...-..-...|.-.++.+ -..|+++|||.+..++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPi---f~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPI---FTNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChh---hhceeeecccccCCHH
Confidence 799999999999999999999999999999886 555554444331100001111111111 2369999999999998
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCC
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPE 437 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~ 437 (606)
+|++||++|+++++++.+
T Consensus 78 --------------tQsAlLeam~Er~Vt~~g 95 (131)
T PF07726_consen 78 --------------TQSALLEAMEERQVTIDG 95 (131)
T ss_dssp --------------HHHHHHHHHHHSEEEETT
T ss_pred --------------HHHHHHHHHHcCeEEeCC
Confidence 999999999988887644
No 159
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.31 E-value=2e-11 Score=144.30 Aligned_cols=166 Identities=20% Similarity=0.278 Sum_probs=113.2
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.|+. |+|+++.++.+.+.+.+. .+.+++|+||||||||++|+.||..+
T Consensus 176 ~l~~-vigr~~ei~~~i~iL~r~-------------------------------~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 176 KLDP-VIGRDEEIRRTIQVLQRR-------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCCc-CCCCHHHHHHHHHHHhcC-------------------------------CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 3444 899999888777766411 13789999999999999999999987
Q ss_pred ----------CCceeecchhhhh-hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 350 ----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 350 ----------~~~fi~i~~s~l~-~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
+.+++.++...+. ...|.|+- +..++.+++.... ...+.||||||+|.+..... .+.+.
T Consensus 224 ~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~-e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~-~~~~~----- 293 (857)
T PRK10865 224 INGEVPEGLKGRRVLALDMGALVAGAKYRGEF-EERLKGVLNDLAK---QEGNVILFIDELHTMVGAGK-ADGAM----- 293 (857)
T ss_pred hcCCCchhhCCCEEEEEehhhhhhccchhhhh-HHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCC-Cccch-----
Confidence 6788888887765 23466665 6677777765421 12568999999999976522 11222
Q ss_pred HHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhH
Q 007362 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~ 498 (606)
++++.|...|+. ..+.+|.+++..+..+.+
T Consensus 294 d~~~~lkp~l~~-----------------------g~l~~IgaTt~~e~r~~~--------------------------- 323 (857)
T PRK10865 294 DAGNMLKPALAR-----------------------GELHCVGATTLDEYRQYI--------------------------- 323 (857)
T ss_pred hHHHHhcchhhc-----------------------CCCeEEEcCCCHHHHHHh---------------------------
Confidence 267777777651 245667777654322111
Q ss_pred hHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhh
Q 007362 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (606)
Q Consensus 499 ~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~ 545 (606)
.++++|.+||+. |.+..++.++...|++.
T Consensus 324 -----------------~~d~al~rRf~~-i~v~eP~~~~~~~iL~~ 352 (857)
T PRK10865 324 -----------------EKDAALERRFQK-VFVAEPSVEDTIAILRG 352 (857)
T ss_pred -----------------hhcHHHHhhCCE-EEeCCCCHHHHHHHHHH
Confidence 157889999975 45566688888888764
No 160
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.31 E-value=3.5e-11 Score=125.76 Aligned_cols=188 Identities=24% Similarity=0.353 Sum_probs=114.5
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ ++|++++++.|..++... ...+++|+||||||||++++++++.+
T Consensus 15 ~~~~-~~g~~~~~~~l~~~i~~~-------------------------------~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 15 TLDE-IVGQEEIVERLKSYVKEK-------------------------------NMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHH-hcCcHHHHHHHHHHHhCC-------------------------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4444 789999999998777310 01469999999999999999999987
Q ss_pred CC-----ceeecchhhhhhcCCcccc-hHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHH
Q 007362 350 NV-----PFVIADATTLTQAGYVGED-VESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQA 423 (606)
Q Consensus 350 ~~-----~fi~i~~s~l~~sg~vG~~-~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~ 423 (606)
.. .++.+++++.. +.. ....+..+....+ +..+...+|+|||+|.+... .++.
T Consensus 63 ~~~~~~~~~i~~~~~~~~-----~~~~~~~~i~~~~~~~~--~~~~~~~vviiDe~~~l~~~--------------~~~~ 121 (319)
T PRK00440 63 YGEDWRENFLELNASDER-----GIDVIRNKIKEFARTAP--VGGAPFKIIFLDEADNLTSD--------------AQQA 121 (319)
T ss_pred cCCccccceEEecccccc-----chHHHHHHHHHHHhcCC--CCCCCceEEEEeCcccCCHH--------------HHHH
Confidence 32 34444433211 111 0111212211111 11124569999999998776 7888
Q ss_pred HHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHH
Q 007362 424 LLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSL 503 (606)
Q Consensus 424 LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~l 503 (606)
|++.++.. ..+..+|++++..
T Consensus 122 L~~~le~~---------------------~~~~~lIl~~~~~-------------------------------------- 142 (319)
T PRK00440 122 LRRTMEMY---------------------SQNTRFILSCNYS-------------------------------------- 142 (319)
T ss_pred HHHHHhcC---------------------CCCCeEEEEeCCc--------------------------------------
Confidence 99988731 1122344443311
Q ss_pred HhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCC
Q 007362 504 LESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKN 583 (606)
Q Consensus 504 l~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~ 583 (606)
..+.+++.+|+. ++.|.+++.+++..++... +...+ +.++++++++|++.. +
T Consensus 143 -----------~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~-----------~~~~~--~~i~~~al~~l~~~~---~ 194 (319)
T PRK00440 143 -----------SKIIDPIQSRCA-VFRFSPLKKEAVAERLRYI-----------AENEG--IEITDDALEAIYYVS---E 194 (319)
T ss_pred -----------cccchhHHHHhh-eeeeCCCCHHHHHHHHHHH-----------HHHcC--CCCCHHHHHHHHHHc---C
Confidence 013344566664 6899999999888777642 11223 458999999999873 2
Q ss_pred CChHHHHHHHHHHH
Q 007362 584 TGARGLRAILESIL 597 (606)
Q Consensus 584 ~GAR~L~~~Ie~~l 597 (606)
...|.+.+.++...
T Consensus 195 gd~r~~~~~l~~~~ 208 (319)
T PRK00440 195 GDMRKAINALQAAA 208 (319)
T ss_pred CCHHHHHHHHHHHH
Confidence 23566666666543
No 161
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.31 E-value=6.8e-12 Score=132.80 Aligned_cols=63 Identities=33% Similarity=0.580 Sum_probs=45.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC--C
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--V 351 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~--~ 351 (606)
-+|||.+|+++....+. +-....-.| +.+||.||||||||.||-++|++|+ .
T Consensus 25 GlVGQ~~AReAagiiv~-----mIk~~K~aG---------------------r~iLiaGppGtGKTAlA~~ia~eLG~~~ 78 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVD-----MIKEGKIAG---------------------RAILIAGPPGTGKTALAMAIAKELGEDV 78 (398)
T ss_dssp TEES-HHHHHHHHHHHH-----HHHTT--TT----------------------EEEEEE-TTSSHHHHHHHHHHHCTTTS
T ss_pred cccChHHHHHHHHHHHH-----HHhcccccC---------------------cEEEEeCCCCCCchHHHHHHHHHhCCCC
Confidence 38999999999877773 222333233 8899999999999999999999996 7
Q ss_pred ceeecchhhhh
Q 007362 352 PFVIADATTLT 362 (606)
Q Consensus 352 ~fi~i~~s~l~ 362 (606)
||+.++++++.
T Consensus 79 PF~~isgSEiy 89 (398)
T PF06068_consen 79 PFVSISGSEIY 89 (398)
T ss_dssp -EEEEEGGGG-
T ss_pred CeeEcccceee
Confidence 88877776554
No 162
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.31 E-value=3.5e-11 Score=142.53 Aligned_cols=190 Identities=23% Similarity=0.296 Sum_probs=122.8
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.++. |+|+++.++.+.+.+.+. .+.+++|+||||||||++++.+|+.+
T Consensus 171 ~~~~-~igr~~ei~~~~~~l~r~-------------------------------~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 171 KLDP-VIGRDEEIRRTIQVLSRR-------------------------------TKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCc-CCCcHHHHHHHHHHHhcC-------------------------------CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3444 899999888887766411 13789999999999999999999875
Q ss_pred ----------CCceeecchhhhh-hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 350 ----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 350 ----------~~~fi~i~~s~l~-~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
+.+++.++...+. ...|.|+- +..+..++...... ..+.||||||||.+...... ..+ .
T Consensus 219 ~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~-e~~l~~~l~~~~~~---~~~~ILfIDEih~l~~~g~~-~~~-----~ 288 (852)
T TIGR03346 219 VNGDVPESLKNKRLLALDMGALIAGAKYRGEF-EERLKAVLNEVTKS---EGQIILFIDELHTLVGAGKA-EGA-----M 288 (852)
T ss_pred hccCCchhhcCCeEEEeeHHHHhhcchhhhhH-HHHHHHHHHHHHhc---CCCeEEEeccHHHhhcCCCC-cch-----h
Confidence 5678888877664 33466654 56667777655321 24689999999998754211 111 1
Q ss_pred HHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhH
Q 007362 419 GVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAA 498 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~ 498 (606)
++.+.|...++ ...+.+|.+++..+..+.+
T Consensus 289 d~~~~Lk~~l~-----------------------~g~i~~IgaTt~~e~r~~~--------------------------- 318 (852)
T TIGR03346 289 DAGNMLKPALA-----------------------RGELHCIGATTLDEYRKYI--------------------------- 318 (852)
T ss_pred HHHHHhchhhh-----------------------cCceEEEEeCcHHHHHHHh---------------------------
Confidence 25666655544 2345667776643221111
Q ss_pred hHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 499 VTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 499 ~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
.++++|.+||. .|.+..++.++...|+... ..+|.. ...+.++++++..++..
T Consensus 319 -----------------~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~----~~~~e~-----~~~v~~~d~~i~~~~~l 371 (852)
T TIGR03346 319 -----------------EKDAALERRFQ-PVFVDEPTVEDTISILRGL----KERYEV-----HHGVRITDPAIVAAATL 371 (852)
T ss_pred -----------------hcCHHHHhcCC-EEEeCCCCHHHHHHHHHHH----HHHhcc-----ccCCCCCHHHHHHHHHh
Confidence 15789999996 4678888999998888643 222211 23344666666666643
No 163
>PHA02244 ATPase-like protein
Probab=99.30 E-value=4.6e-11 Score=127.44 Aligned_cols=204 Identities=14% Similarity=0.172 Sum_probs=118.0
Q ss_pred CCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhh
Q 007362 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN 385 (606)
Q Consensus 306 g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~ 385 (606)
+.++.+.........+.....+|||+||||||||++|+++|+.++.+|+.++... ......|..... ..+...+..
T Consensus 100 g~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~-d~~~L~G~i~~~---g~~~dgpLl 175 (383)
T PHA02244 100 ASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM-DEFELKGFIDAN---GKFHETPFY 175 (383)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh-HHHhhccccccc---ccccchHHH
Confidence 3444454444455555556789999999999999999999999999999887431 111111110000 011111111
Q ss_pred hhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCc
Q 007362 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (606)
Q Consensus 386 l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~ 465 (606)
.+...+++|||||++.+.++ ++..|..++++..+.+.+. ......++.+|+|+|..
T Consensus 176 ~A~~~GgvLiLDEId~a~p~--------------vq~~L~~lLd~r~l~l~g~----------~i~~h~~FRlIATsN~~ 231 (383)
T PHA02244 176 EAFKKGGLFFIDEIDASIPE--------------ALIIINSAIANKFFDFADE----------RVTAHEDFRVISAGNTL 231 (383)
T ss_pred HHhhcCCEEEEeCcCcCCHH--------------HHHHHHHHhccCeEEecCc----------EEecCCCEEEEEeeCCC
Confidence 12347799999999999888 9999999998655543221 12233466777777742
Q ss_pred ChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHH--
Q 007362 466 DLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVL-- 543 (606)
Q Consensus 466 ~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il-- 543 (606)
.- |+.. ++. -...+.+++++|| .+|.|..+++.|. .|+
T Consensus 232 ~~-------------G~~~------------------~y~-------G~k~L~~AllDRF-v~I~~dyp~~~E~-~i~~~ 271 (383)
T PHA02244 232 GK-------------GADH------------------IYV-------ARNKIDGATLDRF-APIEFDYDEKIEH-LISNG 271 (383)
T ss_pred cc-------------Cccc------------------ccC-------CCcccCHHHHhhc-EEeeCCCCcHHHH-HHhhh
Confidence 10 0000 000 0223788999999 4677777664332 222
Q ss_pred hhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHH
Q 007362 544 TEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAK 577 (606)
Q Consensus 544 ~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~ 577 (606)
...+-.+...+++.+...+....++.-++-+.++
T Consensus 272 ~~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~ 305 (383)
T PHA02244 272 DEDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKK 305 (383)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 2233334444444444456666666655555554
No 164
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.30 E-value=1.9e-10 Score=129.99 Aligned_cols=176 Identities=13% Similarity=0.224 Sum_probs=109.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
..++|||++|+|||.|+++|++.+ +..++++++.++... ++..-....+ ..|.+. + ....+|+||||+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e-l~~al~~~~~-~~f~~~---y--~~~DLLlIDDIq 387 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE-FINSIRDGKG-DSFRRR---Y--REMDILLVDDIQ 387 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHHHhccH-HHHHHH---h--hcCCEEEEehhc
Confidence 459999999999999999999976 356778888776521 1111000011 111111 1 134799999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
.+..+. ..+..|+.+++... +. +..+|+|++..- .
T Consensus 388 ~l~gke------------~tqeeLF~l~N~l~-------------------e~-gk~IIITSd~~P-~------------ 422 (617)
T PRK14086 388 FLEDKE------------STQEEFFHTFNTLH-------------------NA-NKQIVLSSDRPP-K------------ 422 (617)
T ss_pred cccCCH------------HHHHHHHHHHHHHH-------------------hc-CCCEEEecCCCh-H------------
Confidence 875541 24566666665311 11 111223443210 0
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe--EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHH
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI--LVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~--iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~ 558 (606)
+ + ..+.+.|.+||.. ++.+.+++.+.+..||.+. +
T Consensus 423 ------------------------------e-L-~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk-----------a 459 (617)
T PRK14086 423 ------------------------------Q-L-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKK-----------A 459 (617)
T ss_pred ------------------------------h-h-hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH-----------H
Confidence 0 0 0145677788855 7899999999999998752 1
Q ss_pred hcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHH
Q 007362 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 559 ~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al 601 (606)
.. ..+.++++++++|+++ +..+ .|.|..+|.++...++
T Consensus 460 ~~--r~l~l~~eVi~yLa~r-~~rn--vR~LegaL~rL~a~a~ 497 (617)
T PRK14086 460 VQ--EQLNAPPEVLEFIASR-ISRN--IRELEGALIRVTAFAS 497 (617)
T ss_pred Hh--cCCCCCHHHHHHHHHh-ccCC--HHHHHHHHHHHHHHHH
Confidence 11 2467999999999997 3333 5999999988875554
No 165
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.30 E-value=5.3e-11 Score=124.55 Aligned_cols=63 Identities=35% Similarity=0.600 Sum_probs=49.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC--C
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--V 351 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~--~ 351 (606)
-+|||.+|.++--..+. +....+..| +.|||.||||||||.||-++|++|| .
T Consensus 40 G~VGQ~~AReAaGvIv~-----mik~gk~aG---------------------rgiLi~GppgTGKTAlA~gIa~eLG~dv 93 (450)
T COG1224 40 GLVGQEEAREAAGVIVK-----MIKQGKMAG---------------------RGILIVGPPGTGKTALAMGIARELGEDV 93 (450)
T ss_pred cccchHHHHHhhhHHHH-----HHHhCcccc---------------------cEEEEECCCCCcHHHHHHHHHHHhCCCC
Confidence 37999999998877663 223333333 8999999999999999999999995 6
Q ss_pred ceeecchhhhh
Q 007362 352 PFVIADATTLT 362 (606)
Q Consensus 352 ~fi~i~~s~l~ 362 (606)
||+.++++++.
T Consensus 94 PF~~isgsEiY 104 (450)
T COG1224 94 PFVAISGSEIY 104 (450)
T ss_pred Cceeeccceee
Confidence 88877777544
No 166
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=4.2e-11 Score=121.45 Aligned_cols=70 Identities=16% Similarity=0.308 Sum_probs=52.4
Q ss_pred CcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHH
Q 007362 517 LIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILE 594 (606)
Q Consensus 517 l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie 594 (606)
+.|.|.+|+. .++.+.+++.+++.+++.+. +. .+ .+.++++++++|+++. .-.+|.|..+++
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~-------a~----~~--~~~l~~~v~~~L~~~~---~~d~r~l~~~l~ 211 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLR-------AR----LR--GFELPEDVGRFLLKRL---DREMRTLFMTLD 211 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHH-------HH----Hc--CCCCCHHHHHHHHHhh---cCCHHHHHHHHH
Confidence 4578888986 58999999999999988641 11 12 3679999999999983 334699999999
Q ss_pred HHHHHHHH
Q 007362 595 SILTEAMY 602 (606)
Q Consensus 595 ~~l~~al~ 602 (606)
++...++.
T Consensus 212 ~l~~~~l~ 219 (235)
T PRK08084 212 QLDRASIT 219 (235)
T ss_pred HHHHHHHh
Confidence 87545543
No 167
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.29 E-value=2e-11 Score=141.99 Aligned_cols=157 Identities=17% Similarity=0.150 Sum_probs=90.5
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhccc--ccccccCCcEEEEcCCCCHHHHHHHH
Q 007362 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDND--DNVELEKSNVLLMGPTGSGKTLLAKT 344 (606)
Q Consensus 267 l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~--~~v~~~~~~vLL~GPpGTGKT~lAra 344 (606)
+...+...|.|++.+|+.|.-++.. ...+.. . .....|-. ..--....||||.|+||||||.+|++
T Consensus 444 L~~SiaP~I~G~e~vK~ailL~L~g-------G~~k~~-~----~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~ 511 (915)
T PTZ00111 444 LLDSFAPSIKARNNVKIGLLCQLFS-------GNKNSS-D----FNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHY 511 (915)
T ss_pred HHHHhCCeEECCHHHHHHHHHHHhc-------CCcccc-c----cccccccccccccccCCceEEEeCCCCccHHHHHHH
Confidence 3445555599999999999666641 111000 0 00000000 00112247999999999999999999
Q ss_pred HHHHhCC-------ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcch
Q 007362 345 LARHVNV-------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (606)
Q Consensus 345 lA~~l~~-------~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~ 417 (606)
+++.... ++..+.++.... +.... ..-+....+.+..+.+++++|||++++...
T Consensus 512 Ih~lspR~~ytsG~~~s~vgLTa~~~--~~d~~-----tG~~~le~GaLvlAdgGtL~IDEidkms~~------------ 572 (915)
T PTZ00111 512 THLLSPRSIYTSGKSSSSVGLTASIK--FNESD-----NGRAMIQPGAVVLANGGVCCIDELDKCHNE------------ 572 (915)
T ss_pred HHHhCCccccCCCCCCccccccchhh--hcccc-----cCcccccCCcEEEcCCCeEEecchhhCCHH------------
Confidence 9987632 333333322110 00000 000111223355678899999999999888
Q ss_pred hHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCC
Q 007362 418 EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (606)
Q Consensus 418 ~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~ 464 (606)
.|.+|+++||...++|...|... .+. .++.+|+++|.
T Consensus 573 --~Q~aLlEaMEqqtIsI~KaGi~~-------tL~-ar~rVIAAaNP 609 (915)
T PTZ00111 573 --SRLSLYEVMEQQTVTIAKAGIVA-------TLK-AETAILASCNP 609 (915)
T ss_pred --HHHHHHHHHhCCEEEEecCCcce-------ecC-CCeEEEEEcCC
Confidence 99999999998777776655322 222 24455666664
No 168
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.28 E-value=3.2e-11 Score=137.30 Aligned_cols=200 Identities=19% Similarity=0.228 Sum_probs=123.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC--CceeecchhhhhhcCCcccc-hHHHHH-HHHHhhhhhhhhcCCCEEEEcccch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADATTLTQAGYVGED-VESILY-KLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~--~~fi~i~~s~l~~sg~vG~~-~~~~l~-~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
.+|||.|+||||||++|++|++.+. .+|+.+.... ....++|.- ....+. ..+....+.+..++++|||||||+.
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~-t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGV-TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCccc-chhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 7999999999999999999999985 3688887532 222233331 111110 0111123345567889999999999
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCC
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~ig 481 (606)
+.+. +|+.|+++|+...+++...|... .+ ..++.+|+|.|..+
T Consensus 96 l~~~--------------~q~~Ll~al~~g~v~i~r~G~~~-------~~-p~~f~lIAt~np~e--------------- 138 (589)
T TIGR02031 96 LDDG--------------LSNRLLQALDEGVVIVEREGISV-------VH-PAKFALIATYDPAE--------------- 138 (589)
T ss_pred CCHH--------------HHHHHHHHHHcCCeEEEECCCce-------ee-cCceEEEEecCCcc---------------
Confidence 9988 99999999996666554443221 11 23455666655321
Q ss_pred cCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcC-HHHHHHHHhhhHHHHH---------
Q 007362 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALT-EDQLVKVLTEPKNALG--------- 551 (606)
Q Consensus 482 f~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls-~eel~~Il~~~l~~L~--------- 551 (606)
....|.+.|++||+..|.+..+. .++..+|+...+....
T Consensus 139 -------------------------------~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~ 187 (589)
T TIGR02031 139 -------------------------------GGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELEL 187 (589)
T ss_pred -------------------------------ccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHH
Confidence 01137889999999977776554 4555666665432111
Q ss_pred -HHHHHHHhcCCcccccCHHHHHHHHHccCCCCCC-hHHHHHHHH
Q 007362 552 -KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTG-ARGLRAILE 594 (606)
Q Consensus 552 -k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~G-AR~L~~~Ie 594 (606)
.+........-..+.++++++++|++.+...+.. .|..-.++.
T Consensus 188 ~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r 232 (589)
T TIGR02031 188 LRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVR 232 (589)
T ss_pred HHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHH
Confidence 1111112222345679999999999987665553 454444444
No 169
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.27 E-value=1.3e-10 Score=125.60 Aligned_cols=212 Identities=20% Similarity=0.224 Sum_probs=125.0
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---
Q 007362 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV--- 349 (606)
Q Consensus 273 ~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l--- 349 (606)
+.++|.+...+.|...+..... . ..+.+++|+||||||||++++.+++.+
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-------------------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-------------------SRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-------------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3478999998888887742210 0 012679999999999999999999877
Q ss_pred --CCceeecchhhhhhc---------CC-------cccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhcccc
Q 007362 350 --NVPFVIADATTLTQA---------GY-------VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNI 411 (606)
Q Consensus 350 --~~~fi~i~~s~l~~s---------g~-------vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~ 411 (606)
+..++.++|...... .+ .+......+..+.+... ....+.||+|||+|.+... .
T Consensus 83 ~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~viviDE~d~l~~~-~---- 154 (394)
T PRK00411 83 AVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLD---ERDRVLIVALDDINYLFEK-E---- 154 (394)
T ss_pred cCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCEEEEEECCHhHhhcc-C----
Confidence 467888887543210 00 11111222222221111 1123469999999998621 0
Q ss_pred ccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccc
Q 007362 412 SRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMR 491 (606)
Q Consensus 412 ~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~ 491 (606)
+.+.+..|+..++. ....++.+|+.++..++.+
T Consensus 155 -----~~~~l~~l~~~~~~--------------------~~~~~v~vI~i~~~~~~~~---------------------- 187 (394)
T PRK00411 155 -----GNDVLYSLLRAHEE--------------------YPGARIGVIGISSDLTFLY---------------------- 187 (394)
T ss_pred -----CchHHHHHHHhhhc--------------------cCCCeEEEEEEECCcchhh----------------------
Confidence 11266666666542 1123566777666432211
Q ss_pred cccchhHhHHHHHhhhcchhhhhccCcccccccCC-eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHH
Q 007362 492 AGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP-ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEK 570 (606)
Q Consensus 492 ~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d-~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~ 570 (606)
.+.+.+.+|+. ..|.|++++.+++.+|+...+ ...+ ..-.++++
T Consensus 188 ------------------------~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~-------~~~~----~~~~~~~~ 232 (394)
T PRK00411 188 ------------------------ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV-------EEGF----YPGVVDDE 232 (394)
T ss_pred ------------------------hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH-------Hhhc----ccCCCCHh
Confidence 13344445553 478999999999999987532 1111 12248899
Q ss_pred HHHHHHHccCCCCCChHHHHHHHHHHHHHHH
Q 007362 571 ALRVIAKKATAKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 571 al~~La~~a~~~~~GAR~L~~~Ie~~l~~al 601 (606)
+++.+++........+|....++...+..+.
T Consensus 233 ~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 233 VLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 9999988754323346766677766555443
No 170
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.27 E-value=7.9e-11 Score=125.92 Aligned_cols=212 Identities=17% Similarity=0.224 Sum_probs=122.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC---
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN--- 350 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~--- 350 (606)
.++|.++.++.|...+..... . ..+.+++|+||||||||++++.+++.+.
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~----~-----------------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~ 68 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILR----G-----------------------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAA 68 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHc----C-----------------------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 479999999999888752110 0 0126799999999999999999998762
Q ss_pred ------Cceeecchhhhhhc---------CC---------cccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhh
Q 007362 351 ------VPFVIADATTLTQA---------GY---------VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (606)
Q Consensus 351 ------~~fi~i~~s~l~~s---------g~---------vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r 406 (606)
..++.++|...... .+ .+.+....+..+++... ....+.||+|||+|.+....
T Consensus 69 ~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~~ 145 (365)
T TIGR02928 69 EDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGDD 145 (365)
T ss_pred hccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccCC
Confidence 46777777543210 00 01111122222222211 12345699999999986320
Q ss_pred hccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccc
Q 007362 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (606)
Q Consensus 407 ~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~ 486 (606)
..++..|+.+.+-. .....++.+|+.++..++.
T Consensus 146 -----------~~~L~~l~~~~~~~------------------~~~~~~v~lI~i~n~~~~~------------------ 178 (365)
T TIGR02928 146 -----------DDLLYQLSRARSNG------------------DLDNAKVGVIGISNDLKFR------------------ 178 (365)
T ss_pred -----------cHHHHhHhcccccc------------------CCCCCeEEEEEEECCcchH------------------
Confidence 01444444442100 1123456666665532210
Q ss_pred ccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC-eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 487 RANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP-ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 487 ~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d-~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
..+.+.+.+||. ..+.|++++.+++.+|+...+. ..+ ...
T Consensus 179 ----------------------------~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~-------~~~----~~~ 219 (365)
T TIGR02928 179 ----------------------------ENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE-------KAF----YDG 219 (365)
T ss_pred ----------------------------hhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH-------hhc----cCC
Confidence 114455556664 4789999999999999986321 101 123
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al 601 (606)
.+++++++++++......-.+|....++...+..+.
T Consensus 220 ~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 220 VLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred CCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 488888888877643333346777777776665443
No 171
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.26 E-value=9.2e-11 Score=134.67 Aligned_cols=206 Identities=18% Similarity=0.252 Sum_probs=127.7
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCc-EEEEcCCCCHHHHHHHHHHHHh--
Q 007362 273 KFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSN-VLLMGPTGSGKTLLAKTLARHV-- 349 (606)
Q Consensus 273 ~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~-vLL~GPpGTGKT~lAralA~~l-- 349 (606)
+.+.|.|+-++.|..+|...... . .+.+ ++|+|+||||||++++.+.+.+
T Consensus 755 D~LPhREeEIeeLasfL~paIkg-------s--------------------gpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ-------S--------------------GSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc-------C--------------------CCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34788888888888877522110 0 1134 5699999999999999998776
Q ss_pred --------CCceeecchhhhhhc---------CC------cccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhh
Q 007362 350 --------NVPFVIADATTLTQA---------GY------VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKA 406 (606)
Q Consensus 350 --------~~~fi~i~~s~l~~s---------g~------vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r 406 (606)
...+++++|..+... .+ .|......+..+|...... .....||+|||||.|...
T Consensus 808 eaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~--~r~v~IIILDEID~L~kK- 884 (1164)
T PTZ00112 808 KTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKD--NRNVSILIIDEIDYLITK- 884 (1164)
T ss_pred HHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcc--cccceEEEeehHhhhCcc-
Confidence 145678888543211 00 1111123334444332110 112359999999999765
Q ss_pred hccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccc
Q 007362 407 ESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPV 486 (606)
Q Consensus 407 ~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~ 486 (606)
.+..|+.+++-.. .....+++|+.+|..++
T Consensus 885 -------------~QDVLYnLFR~~~------------------~s~SKLiLIGISNdlDL------------------- 914 (1164)
T PTZ00112 885 -------------TQKVLFTLFDWPT------------------KINSKLVLIAISNTMDL------------------- 914 (1164)
T ss_pred -------------HHHHHHHHHHHhh------------------ccCCeEEEEEecCchhc-------------------
Confidence 5666777776210 12234666766653221
Q ss_pred ccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 487 RANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 487 ~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
...+.|.+.+|+.. .|.|.||+.+++.+||...+.. . ..
T Consensus 915 ---------------------------perLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~----------A---~g 954 (1164)
T PTZ00112 915 ---------------------------PERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN----------C---KE 954 (1164)
T ss_pred ---------------------------chhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh----------C---CC
Confidence 11244566677754 5889999999999999864221 1 23
Q ss_pred ccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 566 HFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 566 ~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
.+++++++++++++....-.||..-.+++..+.
T Consensus 955 VLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 955 IIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred CCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 599999999999776666668877666665543
No 172
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.24 E-value=4.9e-11 Score=136.19 Aligned_cols=50 Identities=42% Similarity=0.571 Sum_probs=41.9
Q ss_pred HhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 269 KGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 269 ~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
+.+.+.|+||+++++.|..++.. ..+++|+||||||||++|+++++.
T Consensus 14 ~~~~~~viG~~~a~~~l~~a~~~---------------------------------~~~~ll~G~pG~GKT~la~~la~~ 60 (608)
T TIGR00764 14 ERLIDQVIGQEEAVEIIKKAAKQ---------------------------------KRNVLLIGEPGVGKSMLAKAMAEL 60 (608)
T ss_pred hhhHhhccCHHHHHHHHHHHHHc---------------------------------CCCEEEECCCCCCHHHHHHHHHHH
Confidence 34555699999999999887741 268999999999999999999998
Q ss_pred hCC
Q 007362 349 VNV 351 (606)
Q Consensus 349 l~~ 351 (606)
++.
T Consensus 61 l~~ 63 (608)
T TIGR00764 61 LPD 63 (608)
T ss_pred cCc
Confidence 854
No 173
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.23 E-value=1.8e-12 Score=119.80 Aligned_cols=121 Identities=24% Similarity=0.386 Sum_probs=70.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhc-CCcccchHHHHHHHHHhhhhhh--hhcCCCEEEEcccchhh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDVESILYKLLAQAEFNV--EAAQQGMVYIDEVDKIT 403 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~s-g~vG~~~~~~l~~lf~~a~~~l--~~a~~~ILfIDEiD~l~ 403 (606)
+|||+||||||||++|+.+|+.++.+++.+.++...+. .+.|...-. ...+......+ ...++.|+||||++++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCcccCC
Confidence 58999999999999999999999999998888754321 111111000 00000000011 12367899999999988
Q ss_pred hhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCc
Q 007362 404 KKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (606)
Q Consensus 404 ~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~ 465 (606)
+. +++.|+.+||+..+.++..+......... ....++.+|+|.|..
T Consensus 79 ~~--------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~--~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 79 PE--------------VLESLLSLLEERRIQLPEGGEEIKEPNND--LASPNFRIIATMNPR 124 (139)
T ss_dssp HH--------------HHHTTHHHHSSSEEEE-TSSSEEE--TT--------EEEEEEESSS
T ss_pred HH--------------HHHHHHHHHhhCcccccCCCcEEecCccc--ccccceEEEEEEcCC
Confidence 77 99999999997666554443222111111 112257888888753
No 174
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=2.4e-10 Score=122.45 Aligned_cols=163 Identities=26% Similarity=0.347 Sum_probs=102.1
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
+.|++..+ |+||+++++.|..++... ..+..+||+||+|+|||++
T Consensus 17 ~~P~~~~~-----l~Gh~~a~~~L~~a~~~g------------------------------rl~ha~L~~G~~G~GKttl 61 (351)
T PRK09112 17 PSPSENTR-----LFGHEEAEAFLAQAYREG------------------------------KLHHALLFEGPEGIGKATL 61 (351)
T ss_pred CCCCchhh-----ccCcHHHHHHHHHHHHcC------------------------------CCCeeEeeECCCCCCHHHH
Confidence 35555444 899999999998888411 0124599999999999999
Q ss_pred HHHHHHHhCC-------ceeec----chhh--hhhc----CC--c-------------ccchHHHHHHHHHhhhhhhhhc
Q 007362 342 AKTLARHVNV-------PFVIA----DATT--LTQA----GY--V-------------GEDVESILYKLLAQAEFNVEAA 389 (606)
Q Consensus 342 AralA~~l~~-------~fi~i----~~s~--l~~s----g~--v-------------G~~~~~~l~~lf~~a~~~l~~a 389 (606)
|+.+|+.+.+ +.... .|.. .... ++ + ... ...++.+.+.........
T Consensus 62 A~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~-vd~iR~l~~~l~~~~~~g 140 (351)
T PRK09112 62 AFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAIT-VDEIRRVGHFLSQTSGDG 140 (351)
T ss_pred HHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCC-HHHHHHHHHHhhhccccC
Confidence 9999998854 11100 1110 0000 00 0 001 122333332222111223
Q ss_pred CCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHH
Q 007362 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (606)
Q Consensus 390 ~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~ 469 (606)
...||||||+|.++.. .+++||+.||+ ...+.+||+.++..
T Consensus 141 ~~rVviIDeAd~l~~~--------------aanaLLk~LEE---------------------pp~~~~fiLit~~~---- 181 (351)
T PRK09112 141 NWRIVIIDPADDMNRN--------------AANAILKTLEE---------------------PPARALFILISHSS---- 181 (351)
T ss_pred CceEEEEEchhhcCHH--------------HHHHHHHHHhc---------------------CCCCceEEEEECCh----
Confidence 5579999999999888 89999999984 11233444432210
Q ss_pred HHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhh
Q 007362 470 TISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (606)
Q Consensus 470 ~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~ 545 (606)
..+.|.+.+|+ ..+.|.+++.+++.+++..
T Consensus 182 ---------------------------------------------~~llptIrSRc-~~i~l~pl~~~~~~~~L~~ 211 (351)
T PRK09112 182 ---------------------------------------------GRLLPTIRSRC-QPISLKPLDDDELKKALSH 211 (351)
T ss_pred ---------------------------------------------hhccHHHHhhc-cEEEecCCCHHHHHHHHHH
Confidence 12457888998 5999999999999988874
No 175
>PRK08727 hypothetical protein; Validated
Probab=99.21 E-value=3.6e-10 Score=114.48 Aligned_cols=168 Identities=22% Similarity=0.276 Sum_probs=104.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
..++|+||+|||||.|++++++.+ +...+++++.++.. .+...++... ...+|+|||++.+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~----------~~~~~~~~l~------~~dlLiIDDi~~l 105 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG----------RLRDALEALE------GRSLVALDGLESI 105 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh----------hHHHHHHHHh------cCCEEEEeCcccc
Confidence 459999999999999999998776 34444555444321 1112222211 3359999999987
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf 482 (606)
..... .+..|+.+++... .+...+|+|++.. ..+.
T Consensus 106 ~~~~~------------~~~~lf~l~n~~~--------------------~~~~~vI~ts~~~-p~~l------------ 140 (233)
T PRK08727 106 AGQRE------------DEVALFDFHNRAR--------------------AAGITLLYTARQM-PDGL------------ 140 (233)
T ss_pred cCChH------------HHHHHHHHHHHHH--------------------HcCCeEEEECCCC-hhhh------------
Confidence 64311 4456666665211 0112234444421 0000
Q ss_pred CcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccC--CeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRF--PILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~--d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
. .+.|.+.+|| ..++.|.+++.+++.+|+.+. + ..
T Consensus 141 -------------------------------~-~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~-------a----~~ 177 (233)
T PRK08727 141 -------------------------------A-LVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER-------A----QR 177 (233)
T ss_pred -------------------------------h-hhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH-------H----HH
Confidence 0 1457777886 358899999999999998752 1 11
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
+ .+.++++++++|+++. . -.+|.+.++++.+...++.
T Consensus 178 ~--~l~l~~e~~~~La~~~-~--rd~r~~l~~L~~l~~~~~~ 214 (233)
T PRK08727 178 R--GLALDEAAIDWLLTHG-E--RELAGLVALLDRLDRESLA 214 (233)
T ss_pred c--CCCCCHHHHHHHHHhC-C--CCHHHHHHHHHHHHHHHHH
Confidence 2 4679999999999983 2 3457887888877654443
No 176
>PRK06893 DNA replication initiation factor; Validated
Probab=99.21 E-value=1.1e-10 Score=118.00 Aligned_cols=169 Identities=15% Similarity=0.247 Sum_probs=102.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
..++|+||||||||+|++++|+++ +....+++...... ....+++.. ....+|+|||++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~----------~~~~~~~~~------~~~dlLilDDi~~~ 103 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY----------FSPAVLENL------EQQDLVCLDDLQAV 103 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh----------hhHHHHhhc------ccCCEEEEeChhhh
Confidence 458999999999999999999886 22333333332110 001112111 13469999999987
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf 482 (606)
.... ..+..|+.+++... +....++|+|++... .
T Consensus 104 ~~~~------------~~~~~l~~l~n~~~-------------------~~~~~illits~~~p-~-------------- 137 (229)
T PRK06893 104 IGNE------------EWELAIFDLFNRIK-------------------EQGKTLLLISADCSP-H-------------- 137 (229)
T ss_pred cCCh------------HHHHHHHHHHHHHH-------------------HcCCcEEEEeCCCCh-H--------------
Confidence 5431 14456777665211 112233444444210 0
Q ss_pred CcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
.++ ...|.+.+|+. .++.+.+++.+++.+|+.+. +..
T Consensus 138 -----------------------------~l~-~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~-----------a~~ 176 (229)
T PRK06893 138 -----------------------------ALS-IKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN-----------AYQ 176 (229)
T ss_pred -----------------------------Hcc-ccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH-----------HHH
Confidence 000 12366777764 48889999999999998752 111
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
+ .+.++++++++|+++. .-..|.|..+++.+....+.
T Consensus 177 ~--~l~l~~~v~~~L~~~~---~~d~r~l~~~l~~l~~~~~~ 213 (229)
T PRK06893 177 R--GIELSDEVANFLLKRL---DRDMHTLFDALDLLDKASLQ 213 (229)
T ss_pred c--CCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHh
Confidence 2 4679999999999983 23469999999987544443
No 177
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.17 E-value=7.1e-10 Score=114.11 Aligned_cols=232 Identities=19% Similarity=0.251 Sum_probs=140.3
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
.....++..|++.+.||.-|++.|..++..++.. ... ..|..+-|+|+|||||.++
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n---~~p---------------------~KPLvLSfHG~tGTGKN~V 126 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWAN---PNP---------------------RKPLVLSFHGWTGTGKNYV 126 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC---CCC---------------------CCCeEEEecCCCCCchhHH
Confidence 3466789999999999999999998888755321 111 1246788999999999999
Q ss_pred HHHHHHHhC-----Cceeecc--hhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccC
Q 007362 342 AKTLARHVN-----VPFVIAD--ATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (606)
Q Consensus 342 AralA~~l~-----~~fi~i~--~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~ 414 (606)
++.||+.+. .+|+..- ...+-...+ ++..-.++.+.....++..+.+|+++||+|+|.+.
T Consensus 127 a~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~----ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g--------- 193 (344)
T KOG2170|consen 127 AEIIAENLYRGGLRSPFVHHFVATLHFPHASK----IEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG--------- 193 (344)
T ss_pred HHHHHHHHHhccccchhHHHhhhhccCCChHH----HHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh---------
Confidence 999999772 3443211 111111111 12222344445556666778999999999999988
Q ss_pred cchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcC--hHHHHHh----hhcccCCCcCccccc
Q 007362 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD--LEKTISE----RRQDSSIGFGAPVRA 488 (606)
Q Consensus 415 ~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~--l~~~i~~----~~~~~~igf~~~~~~ 488 (606)
+.++|-..||-.- ...-++.++.|||+-+|... +.++.-+ +..++.+.+.
T Consensus 194 -----Lld~lkpfLdyyp--------------~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~----- 249 (344)
T KOG2170|consen 194 -----LLDVLKPFLDYYP--------------QVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLK----- 249 (344)
T ss_pred -----HHHHHhhhhcccc--------------ccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhh-----
Confidence 8888888877210 01125778888998665442 2322222 2222222221
Q ss_pred ccccccchhHhHHHHHhhhcch---hhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCccc
Q 007362 489 NMRAGVTDAAVTSSLLESVESS---DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKL 565 (606)
Q Consensus 489 ~~~~~~~~~~~~~~ll~~~~~~---~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l 565 (606)
.....++.....+ .+....+.+ ..+||.+|+|.|++..++.+.++.. +..++ +
T Consensus 250 ---------~~E~~L~~~~~n~~~~Gl~~S~li~--~~lid~fIPFLPLek~hV~~C~r~e-----------l~~rg--~ 305 (344)
T KOG2170|consen 250 ---------SFEPALMQSAFNEKAGGLVHSRLIS--NNLIDHFIPFLPLEKRHVRSCIRAE-----------LRKRG--L 305 (344)
T ss_pred ---------hhhHHHHHhhhccccccccccccch--hhHHhhccCcCcccHHHHHHHHHHH-----------HHhcc--c
Confidence 1122222222111 112222222 3668899999999999998888742 11223 5
Q ss_pred ccCHHHHHHHHHc
Q 007362 566 HFTEKALRVIAKK 578 (606)
Q Consensus 566 ~i~e~al~~La~~ 578 (606)
..+++.++.+++.
T Consensus 306 ~~d~~~~erva~~ 318 (344)
T KOG2170|consen 306 APDQDFVERVANS 318 (344)
T ss_pred ccchHHHHHHHHh
Confidence 5777777777754
No 178
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.17 E-value=8.5e-10 Score=124.01 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=86.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC-hhhHhh-h-cccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAE-PKTAAA-V-DNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s-~~~~~~-~-d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
++|-|.+-+.+...+..+-.-++.....+..... .+-+.+ . +....-.++++.+||+||||-||||||+.+|+.+|+
T Consensus 273 LLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAkqaGY 352 (877)
T KOG1969|consen 273 LLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAKQAGY 352 (877)
T ss_pred HhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHHhcCc
Confidence 5677777777777766443334431111111000 111111 1 112222334588999999999999999999999999
Q ss_pred ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 352 ~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
.+++|++++-.. +..+...+..+.......-+..++.+|+|||||..... +.+.|+.++.
T Consensus 353 sVvEINASDeRt----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~--------------~Vdvilslv~ 412 (877)
T KOG1969|consen 353 SVVEINASDERT----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA--------------AVDVILSLVK 412 (877)
T ss_pred eEEEeccccccc----HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH--------------HHHHHHHHHH
Confidence 999999998653 22333344444443332223357899999999987655 8899999887
No 179
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.17 E-value=1.1e-10 Score=129.17 Aligned_cols=176 Identities=16% Similarity=0.307 Sum_probs=107.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
..++|+||+|||||+|++++++.+ +..++++++.++... ++..-.......+.+. + ....+|+|||+|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~~~~~~----~--~~~dlLiiDDi~ 221 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND-FVNALRNNTMEEFKEK----Y--RSVDVLLIDDIQ 221 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHHcCcHHHHHHH----H--hcCCEEEEehhh
Confidence 569999999999999999999987 455777887766421 1110000001111111 1 134699999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
.+..+. ..+..|+.+++... +....+ |++++... .
T Consensus 222 ~l~~~~------------~~~~~l~~~~n~l~-------------------~~~~~i-iits~~~p-~------------ 256 (450)
T PRK00149 222 FLAGKE------------RTQEEFFHTFNALH-------------------EAGKQI-VLTSDRPP-K------------ 256 (450)
T ss_pred hhcCCH------------HHHHHHHHHHHHHH-------------------HCCCcE-EEECCCCH-H------------
Confidence 875541 14566666665211 001112 22333210 0
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHH
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~ 558 (606)
++ . .+.+.+.+||. .++.|.+++.+++.+|+.....
T Consensus 257 ------------------------------~l-~-~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~---------- 294 (450)
T PRK00149 257 ------------------------------EL-P-GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE---------- 294 (450)
T ss_pred ------------------------------HH-H-HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH----------
Confidence 00 0 14456778885 4899999999999999885311
Q ss_pred hcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHH
Q 007362 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 559 ~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al 601 (606)
...+.++++++++|++.. . -.+|.|..+|.++...+.
T Consensus 295 ---~~~~~l~~e~l~~ia~~~-~--~~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 295 ---EEGIDLPDEVLEFIAKNI-T--SNVRELEGALNRLIAYAS 331 (450)
T ss_pred ---HcCCCCCHHHHHHHHcCc-C--CCHHHHHHHHHHHHHHHH
Confidence 124669999999999973 2 345888888888766554
No 180
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.16 E-value=4.7e-10 Score=125.04 Aligned_cols=237 Identities=18% Similarity=0.253 Sum_probs=130.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCc--
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVP-- 352 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~-- 352 (606)
++||+.+++.+..++. ...+++|.||||+|||++++.++..+.-.
T Consensus 193 v~Gq~~~~~al~laa~---------------------------------~G~~llliG~~GsGKTtLak~L~gllpp~~g 239 (506)
T PRK09862 193 VIGQEQGKRGLEITAA---------------------------------GGHNLLLIGPPGTGKTMLASRINGLLPDLSN 239 (506)
T ss_pred EECcHHHHhhhheecc---------------------------------CCcEEEEECCCCCcHHHHHHHHhccCCCCCC
Confidence 7899998888755442 12789999999999999999999876210
Q ss_pred eeecchhhhhh--------cCC-----c-ccchHHHHHHHHH----hhhhhhhhcCCCEEEEcccchhhhhhhccccccC
Q 007362 353 FVIADATTLTQ--------AGY-----V-GEDVESILYKLLA----QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRD 414 (606)
Q Consensus 353 fi~i~~s~l~~--------sg~-----v-G~~~~~~l~~lf~----~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~ 414 (606)
-..+..+.+.+ ..+ . .+. ......++. ..++.+..++++||||||++.+...
T Consensus 240 ~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~-~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~--------- 309 (506)
T PRK09862 240 EEALESAAILSLVNAESVQKQWRQRPFRSPHH-SASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERR--------- 309 (506)
T ss_pred cEEEecchhhhhhccccccCCcCCCCccCCCc-cchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHH---------
Confidence 00111111110 000 0 000 000111121 1234567789999999999998887
Q ss_pred cchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCccccccccccc
Q 007362 415 VSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGV 494 (606)
Q Consensus 415 ~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~ 494 (606)
+|+.|++.||.+.+.+...+...... .++.+|+|.|... .=.|+.+.+ .
T Consensus 310 -----~~~~L~~~LE~g~v~I~r~g~~~~~p--------a~f~lIAa~NP~p------------cG~~~~~~c------~ 358 (506)
T PRK09862 310 -----TLDALREPIESGQIHLSRTRAKITYP--------ARFQLVAAMNPSP------------TGHYQGNHN------R 358 (506)
T ss_pred -----HHHHHHHHHHcCcEEEecCCcceecc--------CCEEEEEeecCcc------------ceecCCCCC------C
Confidence 99999999997777776665433222 3455555555321 000110000 0
Q ss_pred chhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHH----------HHhhhHHHHHHHHHH--HHhcC-
Q 007362 495 TDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVK----------VLTEPKNALGKQYKR--LFSMN- 561 (606)
Q Consensus 495 ~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~----------Il~~~l~~L~k~~~~--~~~~~- 561 (606)
.......+++.+ +..++++|||..+.+++++.+++.+ |.++.+..-..+..+ .+...
T Consensus 359 c~~~~~~~Y~~~----------ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l 428 (506)
T PRK09862 359 CTPEQTLRYLNR----------LSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWL 428 (506)
T ss_pred cCHHHHHHHHhh----------CCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhccc
Confidence 122223344444 7889999999999999886554432 111111000000000 00000
Q ss_pred -C----cccccCHHHHHHHHHccCCCCCChHHHHHHHHH
Q 007362 562 -N----VKLHFTEKALRVIAKKATAKNTGARGLRAILES 595 (606)
Q Consensus 562 -~----i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~ 595 (606)
. ..+.+++++.+.|.......+..+|...+++.-
T Consensus 429 ~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrv 467 (506)
T PRK09862 429 DSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKV 467 (506)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 0 013467777776665544556778888777753
No 181
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.13 E-value=4.1e-10 Score=109.81 Aligned_cols=150 Identities=23% Similarity=0.313 Sum_probs=94.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc--e------eecchhhhhhc---CC-----ccc-chHHHHHHHHHhhhhhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP--F------VIADATTLTQA---GY-----VGE-DVESILYKLLAQAEFNVEA 388 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~--f------i~i~~s~l~~s---g~-----vG~-~~~~~l~~lf~~a~~~l~~ 388 (606)
..+||+||+|+|||++|+.+++.+... . ...+|..+... ++ .+. .....++.+.+........
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 569999999999999999999988432 0 00001110000 00 000 0023344444443322223
Q ss_pred cCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChH
Q 007362 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLE 468 (606)
Q Consensus 389 a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~ 468 (606)
+...||||||+|++... .++.||+.||. ...+.+||++++..
T Consensus 95 ~~~kviiide~~~l~~~--------------~~~~Ll~~le~---------------------~~~~~~~il~~~~~--- 136 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEA--------------AANALLKTLEE---------------------PPPNTLFILITPSP--- 136 (188)
T ss_pred CCeEEEEEechhhhCHH--------------HHHHHHHHhcC---------------------CCCCeEEEEEECCh---
Confidence 46679999999999887 89999999984 11233444433310
Q ss_pred HHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHH
Q 007362 469 KTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (606)
Q Consensus 469 ~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~ 548 (606)
..+.+.+.+|+ .++.|.+++.+++.+++...
T Consensus 137 ----------------------------------------------~~l~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-- 167 (188)
T TIGR00678 137 ----------------------------------------------EKLLPTIRSRC-QVLPFPPLSEEALLQWLIRQ-- 167 (188)
T ss_pred ----------------------------------------------HhChHHHHhhc-EEeeCCCCCHHHHHHHHHHc--
Confidence 12456677787 48999999999988887641
Q ss_pred HHHHHHHHHHhcCCcccccCHHHHHHHHHcc
Q 007362 549 ALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (606)
Q Consensus 549 ~L~k~~~~~~~~~~i~l~i~e~al~~La~~a 579 (606)
+ ++++++++|++.+
T Consensus 168 -------------g----i~~~~~~~i~~~~ 181 (188)
T TIGR00678 168 -------------G----ISEEAAELLLALA 181 (188)
T ss_pred -------------C----CCHHHHHHHHHHc
Confidence 2 6788999998873
No 182
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.13 E-value=6.7e-10 Score=121.16 Aligned_cols=176 Identities=17% Similarity=0.282 Sum_probs=108.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
..++|+||+|||||+|++++++.+ +..++++++.++... +...-....+..+.+ .+ ....+|+|||+|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~-~~~~~~~~~~~~~~~----~~--~~~dlLiiDDi~ 209 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND-FVNALRNNKMEEFKE----KY--RSVDLLLIDDIQ 209 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH-HHHHHHcCCHHHHHH----HH--HhCCEEEEehhh
Confidence 468999999999999999999887 466778887765421 110000000101111 11 134699999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
.+.... ..+..|+..++...- .+..+|++++... .
T Consensus 210 ~l~~~~------------~~~~~l~~~~n~~~~--------------------~~~~iiits~~~p-~------------ 244 (405)
T TIGR00362 210 FLAGKE------------RTQEEFFHTFNALHE--------------------NGKQIVLTSDRPP-K------------ 244 (405)
T ss_pred hhcCCH------------HHHHHHHHHHHHHHH--------------------CCCCEEEecCCCH-H------------
Confidence 875431 256667776652110 0112233443210 0
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe--EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHH
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI--LVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~--iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~ 558 (606)
+ +. .+.+.+.+||.. ++.|.+++.+++..|+...+
T Consensus 245 ------------------------------~-l~-~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~----------- 281 (405)
T TIGR00362 245 ------------------------------E-LP-GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA----------- 281 (405)
T ss_pred ------------------------------H-Hh-hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH-----------
Confidence 0 00 145677888864 79999999999999987531
Q ss_pred hcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHH
Q 007362 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 559 ~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al 601 (606)
.. ..+.++++++++|+++ +.. ..|.|..+|.++...+.
T Consensus 282 ~~--~~~~l~~e~l~~ia~~-~~~--~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 282 EE--EGLELPDEVLEFIAKN-IRS--NVRELEGALNRLLAYAS 319 (405)
T ss_pred HH--cCCCCCHHHHHHHHHh-cCC--CHHHHHHHHHHHHHHHH
Confidence 11 2466899999999986 333 35899998888776554
No 183
>PRK05642 DNA replication initiation factor; Validated
Probab=99.12 E-value=7.9e-10 Score=112.11 Aligned_cols=168 Identities=20% Similarity=0.284 Sum_probs=109.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
..++|+||+|||||.|++++++.+ +...+++++.++... ... +.+... ..-+|+||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------~~~----~~~~~~------~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------GPE----LLDNLE------QYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------hHH----HHHhhh------hCCEEEEechhhh
Confidence 578999999999999999999765 456677777766521 011 111111 2248999999976
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf 482 (606)
..+. ..+..|+.+++... + .+..+|+|++...-
T Consensus 110 ~~~~------------~~~~~Lf~l~n~~~-------------------~-~g~~ilits~~~p~--------------- 142 (234)
T PRK05642 110 AGKA------------DWEEALFHLFNRLR-------------------D-SGRRLLLAASKSPR--------------- 142 (234)
T ss_pred cCCh------------HHHHHHHHHHHHHH-------------------h-cCCEEEEeCCCCHH---------------
Confidence 5431 14566777765211 1 11123334432100
Q ss_pred CcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
.+ ..+.|.+.+|+. .++.+.+++.+++.+++... +. .
T Consensus 143 -----------------------------~l-~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k-------a~----~ 181 (234)
T PRK05642 143 -----------------------------EL-PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR-------AS----R 181 (234)
T ss_pred -----------------------------Hc-CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH-------HH----H
Confidence 00 014688999985 47889999999999998732 11 1
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
. .+.++++++++|+++ ..-.+|.|..+|+.+...++.
T Consensus 182 ~--~~~l~~ev~~~L~~~---~~~d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 182 R--GLHLTDEVGHFILTR---GTRSMSALFDLLERLDQASLQ 218 (234)
T ss_pred c--CCCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH
Confidence 2 366999999999998 234569999999998776665
No 184
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.11 E-value=3e-11 Score=112.24 Aligned_cols=91 Identities=32% Similarity=0.581 Sum_probs=65.7
Q ss_pred CCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC---CceeecchhhhhhcCCcccchHHHHHHHHHhh
Q 007362 306 GAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTLTQAGYVGEDVESILYKLLAQA 382 (606)
Q Consensus 306 g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~---~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a 382 (606)
|.|+.++.+.+....++....+|+|+|++||||+++|++|+.... .+|+.+++..+. .++++.
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------------~~~l~~- 67 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------------AELLEQ- 67 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------------HHHHHH-
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------------HHHHHH-
Confidence 444555555555555566678999999999999999999998774 477777776532 123332
Q ss_pred hhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 383 EFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 383 ~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
+.+++|||+|||.+... .|..|++.|+.
T Consensus 68 ------a~~gtL~l~~i~~L~~~--------------~Q~~L~~~l~~ 95 (138)
T PF14532_consen 68 ------AKGGTLYLKNIDRLSPE--------------AQRRLLDLLKR 95 (138)
T ss_dssp ------CTTSEEEEECGCCS-HH--------------HHHHHHHHHHH
T ss_pred ------cCCCEEEECChHHCCHH--------------HHHHHHHHHHh
Confidence 36789999999999988 99999999973
No 185
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.10 E-value=7.6e-10 Score=118.81 Aligned_cols=212 Identities=21% Similarity=0.275 Sum_probs=125.2
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.....++|||..|..|.....+ ..-.++|+.|+.||||||++|+||..|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~-------------------------------P~iggvLI~G~kGtaKSt~~Rala~LL 62 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVD-------------------------------PQIGGALIAGEKGTAKSTLARALADLL 62 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcc-------------------------------cccceeEEecCCCccHHHHHHHHHHhC
Confidence 3445589999999988443211 112789999999999999999999988
Q ss_pred C-------Cceee-----c-chhhhhh--------------------------cCCccc-chHHHHHH-HHHhhhhhhhh
Q 007362 350 N-------VPFVI-----A-DATTLTQ--------------------------AGYVGE-DVESILYK-LLAQAEFNVEA 388 (606)
Q Consensus 350 ~-------~~fi~-----i-~~s~l~~--------------------------sg~vG~-~~~~~l~~-lf~~a~~~l~~ 388 (606)
. ++|-. . -|..+.. ...+|. +.++.+.. .-.-.++.+..
T Consensus 63 p~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~ 142 (423)
T COG1239 63 PEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR 142 (423)
T ss_pred CccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh
Confidence 3 22110 0 0000000 012222 12222211 11113455778
Q ss_pred cCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChH
Q 007362 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLE 468 (606)
Q Consensus 389 a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~ 468 (606)
++++||||||+..|... +|+.||+.++.+...+-..|-....+ -++++|.|.|..
T Consensus 143 AnRGIlYvDEvnlL~d~--------------lvd~LLd~aaeG~n~vereGisi~hp--------a~fvligTmNPE--- 197 (423)
T COG1239 143 ANRGILYVDEVNLLDDH--------------LVDALLDVAAEGVNDVEREGISIRHP--------ARFLLIGTMNPE--- 197 (423)
T ss_pred ccCCEEEEeccccccHH--------------HHHHHHHHHHhCCceeeeCceeeccC--------ccEEEEeecCcc---
Confidence 99999999999988887 99999999995433333343322222 346666666642
Q ss_pred HHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCC-cCHHHHHHHHhhhH
Q 007362 469 KTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTA-LTEDQLVKVLTEPK 547 (606)
Q Consensus 469 ~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~-Ls~eel~~Il~~~l 547 (606)
.-.|.|+|++||...|.... .+.++...|+.+.+
T Consensus 198 ---------------------------------------------eGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 198 ---------------------------------------------EGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred ---------------------------------------------ccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 11278999999999877654 44566677766543
Q ss_pred H------HHHHHHHHH---H-----hcC--CcccccCHHHHHHHHHccCCC
Q 007362 548 N------ALGKQYKRL---F-----SMN--NVKLHFTEKALRVIAKKATAK 582 (606)
Q Consensus 548 ~------~L~k~~~~~---~-----~~~--~i~l~i~e~al~~La~~a~~~ 582 (606)
. .+.++|... + .++ -.++.+++++..+++..+...
T Consensus 233 ~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~ 283 (423)
T COG1239 233 AFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARL 283 (423)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHh
Confidence 2 122222221 1 111 124567888888888765433
No 186
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1e-09 Score=115.71 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=72.6
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|++ |+||+++++.|..++... ..+..+||+||.|+|||++|+.+|+.+.
T Consensus 3 ~~~-i~g~~~~~~~l~~~~~~~------------------------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 3 FHT-IIGHENIKNRIKNSIIKN------------------------------RFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred hhh-ccCcHHHHHHHHHHHHcC------------------------------CCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 444 899999999998887411 0125679999999999999999999874
Q ss_pred Cc--------eeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHH
Q 007362 351 VP--------FVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQ 422 (606)
Q Consensus 351 ~~--------fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~ 422 (606)
+. +..+... . ...+ . ...++.+.+........+...|++|||+|+++.. .+|
T Consensus 52 c~~~~~~h~D~~~~~~~--~-~~~i--~-v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~--------------a~n 111 (313)
T PRK05564 52 GKSQQREYVDIIEFKPI--N-KKSI--G-VDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ--------------AQN 111 (313)
T ss_pred CCCCCCCCCCeEEeccc--c-CCCC--C-HHHHHHHHHHHhcCcccCCceEEEEechhhcCHH--------------HHH
Confidence 32 1122111 0 0111 1 1234455443322222346679999999999887 999
Q ss_pred HHHHHHhc
Q 007362 423 ALLKMLEG 430 (606)
Q Consensus 423 ~LL~~Leg 430 (606)
+||+.||+
T Consensus 112 aLLK~LEe 119 (313)
T PRK05564 112 AFLKTIEE 119 (313)
T ss_pred HHHHHhcC
Confidence 99999984
No 187
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=7.7e-10 Score=119.25 Aligned_cols=119 Identities=26% Similarity=0.348 Sum_probs=76.4
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
+.|+...+ |+||+++++.|..++... + .+..+||+||+|+||+++
T Consensus 13 ~~P~~~~~-----iiGq~~~~~~L~~~~~~~--r----------------------------l~HA~Lf~Gp~G~GK~~l 57 (365)
T PRK07471 13 PHPRETTA-----LFGHAAAEAALLDAYRSG--R----------------------------LHHAWLIGGPQGIGKATL 57 (365)
T ss_pred CCCCchhh-----ccChHHHHHHHHHHHHcC--C----------------------------CCceEEEECCCCCCHHHH
Confidence 45655554 899999999999888521 0 124599999999999999
Q ss_pred HHHHHHHhCCcee---------------ecchh---hhhh---cCC---------cc------cchHHHHHHHHHhhhhh
Q 007362 342 AKTLARHVNVPFV---------------IADAT---TLTQ---AGY---------VG------EDVESILYKLLAQAEFN 385 (606)
Q Consensus 342 AralA~~l~~~fi---------------~i~~s---~l~~---sg~---------vG------~~~~~~l~~lf~~a~~~ 385 (606)
|.++|+.+.+.-- .-.|. .+.. .++ .+ .. -..++.+.+.....
T Consensus 58 A~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~-VdqiR~l~~~~~~~ 136 (365)
T PRK07471 58 AYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVIT-VDEVRELISFFGLT 136 (365)
T ss_pred HHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEeccccccccccccccc-HHHHHHHHHHhCcC
Confidence 9999998843110 00011 0000 000 00 01 12344444443333
Q ss_pred hhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 386 l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.....+.||+|||+|.++.. .+++||+.+|.
T Consensus 137 ~~~~~~kVviIDead~m~~~--------------aanaLLK~LEe 167 (365)
T PRK07471 137 AAEGGWRVVIVDTADEMNAN--------------AANALLKVLEE 167 (365)
T ss_pred cccCCCEEEEEechHhcCHH--------------HHHHHHHHHhc
Confidence 33456679999999999887 99999999984
No 188
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.09 E-value=1.2e-09 Score=124.02 Aligned_cols=196 Identities=11% Similarity=0.066 Sum_probs=127.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC--CceeecchhhhhhcCCcccc-hHHHHHHHHH-hhhhhhhhcCCCEEEEcccch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADATTLTQAGYVGED-VESILYKLLA-QAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~--~~fi~i~~s~l~~sg~vG~~-~~~~l~~lf~-~a~~~l~~a~~~ILfIDEiD~ 401 (606)
.+|+|.|+.||+|++++++++..+. .||+.+.-+.-. ..++|.- .+..+..-.. ..++.+..++++||||||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~-~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIAD-DRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcH-HHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence 6899999999999999999999985 477755443222 1234432 2222211111 235667788999999999999
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCC
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIG 481 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~ig 481 (606)
+.++ +++.|++.|+.+.++|...|.....+..+ ++|.+-+..
T Consensus 105 ~~~~--------------~~~aLleame~G~vtIeR~G~s~~~Pa~F--------~LIat~~~~---------------- 146 (584)
T PRK13406 105 LEPG--------------TAARLAAALDTGEVRLERDGLALRLPARF--------GLVALDEGA---------------- 146 (584)
T ss_pred CCHH--------------HHHHHHHHHhCCcEEEEECCcEEecCCCc--------EEEecCCCh----------------
Confidence 9888 99999999998888887766554444333 334331110
Q ss_pred cCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcC
Q 007362 482 FGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMN 561 (606)
Q Consensus 482 f~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~ 561 (606)
-..+.+.+++++||+..|.+..++..+...... ....+ ...++.+ .
T Consensus 147 ------------------------------~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~-~~~~I-~~AR~rl--~ 192 (584)
T PRK13406 147 ------------------------------EEDERAPAALADRLAFHLDLDGLALRDAREIPI-DADDI-AAARARL--P 192 (584)
T ss_pred ------------------------------hcccCCCHHhHhheEEEEEcCCCChHHhcccCC-CHHHH-HHHHHHH--c
Confidence 001348889999999999999988766543111 11122 2222322 1
Q ss_pred CcccccCHHHHHHHHHccCCCCC-ChHHHHHHHHHH
Q 007362 562 NVKLHFTEKALRVIAKKATAKNT-GARGLRAILESI 596 (606)
Q Consensus 562 ~i~l~i~e~al~~La~~a~~~~~-GAR~L~~~Ie~~ 596 (606)
++.++++.++++++.+...+. +.|....++.-.
T Consensus 193 --~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraA 226 (584)
T PRK13406 193 --AVGPPPEAIAALCAAAAALGIASLRAPLLALRAA 226 (584)
T ss_pred --cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 466899999998876655554 667766666533
No 189
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=2.5e-09 Score=113.15 Aligned_cols=155 Identities=23% Similarity=0.264 Sum_probs=99.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce-
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF- 353 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f- 353 (606)
|+||+++++.|..++... ..+..+||+||+|+||+++|+++|+.+.+.-
T Consensus 6 iiGq~~~~~~L~~~i~~~------------------------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~ 55 (314)
T PRK07399 6 LIGQPLAIELLTAAIKQN------------------------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGS 55 (314)
T ss_pred hCCHHHHHHHHHHHHHhC------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 899999999999988521 0136899999999999999999999874321
Q ss_pred -----------------eecchhhhhhc--------CCcc--------cchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 354 -----------------VIADATTLTQA--------GYVG--------EDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 354 -----------------i~i~~s~l~~s--------g~vG--------~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
+.+......+. ...| .. -..++++.+........+...|++||++|
T Consensus 56 c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~-id~ir~i~~~l~~~p~~~~~kVvII~~ae 134 (314)
T PRK07399 56 PSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIR-LEQIREIKRFLSRPPLEAPRKVVVIEDAE 134 (314)
T ss_pred CCCcHhcccccCCCCCEEEEeccccccccccchhhhhhccccccccccCc-HHHHHHHHHHHccCcccCCceEEEEEchh
Confidence 11111000000 0000 00 01233443332222223467899999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
+++.. .+|+||+.||+ .. +.+||+.++..
T Consensus 135 ~m~~~--------------aaNaLLK~LEE---------------------Pp-~~~fILi~~~~--------------- 163 (314)
T PRK07399 135 TMNEA--------------AANALLKTLEE---------------------PG-NGTLILIAPSP--------------- 163 (314)
T ss_pred hcCHH--------------HHHHHHHHHhC---------------------CC-CCeEEEEECCh---------------
Confidence 99887 99999999994 11 22444433310
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhh
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~ 546 (606)
..+.|.+++|+ .++.|.+++.+++.+++.+.
T Consensus 164 ----------------------------------~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 164 ----------------------------------ESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred ----------------------------------HhCcHHHHhhc-eEEecCCCCHHHHHHHHHHh
Confidence 12567778887 58999999999998888753
No 190
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.08 E-value=1.6e-09 Score=119.64 Aligned_cols=177 Identities=19% Similarity=0.280 Sum_probs=105.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
.+++||||+|+|||+|++++++.+ +..++++++.++... +...-....+..+.... .....+|+|||++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~-~~~~~~~~~~~~f~~~~-----~~~~dvLlIDDi~ 204 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNEFREKY-----RKKVDVLLIDDVQ 204 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHhcccHHHHHHHH-----HhcCCEEEEechh
Confidence 469999999999999999999986 346677777765421 10000000011111111 0135699999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
.+.... ..+..|+..++... +.... +|++++.. ...+
T Consensus 205 ~l~~~~------------~~q~elf~~~n~l~-------------------~~~k~-iIitsd~~-p~~l---------- 241 (440)
T PRK14088 205 FLIGKT------------GVQTELFHTFNELH-------------------DSGKQ-IVICSDRE-PQKL---------- 241 (440)
T ss_pred hhcCcH------------HHHHHHHHHHHHHH-------------------HcCCe-EEEECCCC-HHHH----------
Confidence 775431 14556666654211 11112 23333211 0000
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHH
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~ 558 (606)
. .+.+.+.+||. .++.+.+++.+++..|+.+. +
T Consensus 242 ------------------------~----------~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~-----------~ 276 (440)
T PRK14088 242 ------------------------S----------EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM-----------L 276 (440)
T ss_pred ------------------------H----------HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH-----------H
Confidence 0 03345667764 37889999999999998752 1
Q ss_pred hcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHH
Q 007362 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 559 ~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al 601 (606)
... .+.++++++++|+++. . -.+|.|..+|.++...+.
T Consensus 277 ~~~--~~~l~~ev~~~Ia~~~-~--~~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 277 EIE--HGELPEEVLNFVAENV-D--DNLRRLRGAIIKLLVYKE 314 (440)
T ss_pred Hhc--CCCCCHHHHHHHHhcc-c--cCHHHHHHHHHHHHHHHH
Confidence 112 3568999999999973 3 346999999988765554
No 191
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.07 E-value=4.2e-09 Score=106.68 Aligned_cols=174 Identities=22% Similarity=0.363 Sum_probs=110.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CC
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NV 351 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~ 351 (606)
++|.|+.|+.|.+...... .+. +..|+||+|+.|||||+++|++...+ +.
T Consensus 29 L~Gie~Qk~~l~~Nt~~Fl-----~G~----------------------pannvLL~G~rGtGKSSlVkall~~y~~~GL 81 (249)
T PF05673_consen 29 LIGIERQKEALIENTEQFL-----QGL----------------------PANNVLLWGARGTGKSSLVKALLNEYADQGL 81 (249)
T ss_pred hcCHHHHHHHHHHHHHHHH-----cCC----------------------CCcceEEecCCCCCHHHHHHHHHHHHhhcCc
Confidence 7999999999977664221 111 23899999999999999999999877 57
Q ss_pred ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhce
Q 007362 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (606)
Q Consensus 352 ~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~ 431 (606)
.++.+...++.. ...++ ..+...+ .+=|||+|++. +... +.-...|-.+|||.
T Consensus 82 RlIev~k~~L~~-------l~~l~-~~l~~~~------~kFIlf~DDLs-Fe~~------------d~~yk~LKs~LeGg 134 (249)
T PF05673_consen 82 RLIEVSKEDLGD-------LPELL-DLLRDRP------YKFILFCDDLS-FEEG------------DTEYKALKSVLEGG 134 (249)
T ss_pred eEEEECHHHhcc-------HHHHH-HHHhcCC------CCEEEEecCCC-CCCC------------cHHHHHHHHHhcCc
Confidence 788888777652 12333 2222222 34599999865 3222 12567788889975
Q ss_pred eeecCCCCcccCCCCCcEEEecCceeeeccCCCcCh-HHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 432 ~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l-~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
+-. ...|+++..|+|-..| .+...++.. ... ..+++.
T Consensus 135 le~-----------------~P~NvliyATSNRRHLv~E~~~d~~~-------~~~------------------~eih~~ 172 (249)
T PF05673_consen 135 LEA-----------------RPDNVLIYATSNRRHLVPESFSDRED-------IQD------------------DEIHPS 172 (249)
T ss_pred ccc-----------------CCCcEEEEEecchhhccchhhhhccC-------CCc------------------cccCcc
Confidence 532 3467777777775432 111111110 000 001112
Q ss_pred hhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhh
Q 007362 511 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (606)
Q Consensus 511 ~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~ 546 (606)
|.+.+.+ .|.+||...|.|.+++.++..+|+...
T Consensus 173 d~~eEkl--SLsDRFGL~l~F~~~~q~~YL~IV~~~ 206 (249)
T PF05673_consen 173 DTIEEKL--SLSDRFGLWLSFYPPDQEEYLAIVRHY 206 (249)
T ss_pred hHHHHHH--hHHHhCCcEEEecCCCHHHHHHHHHHH
Confidence 2222222 577899999999999999999999864
No 192
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.07 E-value=1.2e-09 Score=114.11 Aligned_cols=87 Identities=30% Similarity=0.374 Sum_probs=61.6
Q ss_pred Cc-EEEEcCCCCHHHHHHHHHHHHhC------------------------CceeecchhhhhhcCCcccchHHHHHHHHH
Q 007362 326 SN-VLLMGPTGSGKTLLAKTLARHVN------------------------VPFVIADATTLTQAGYVGEDVESILYKLLA 380 (606)
Q Consensus 326 ~~-vLL~GPpGTGKT~lAralA~~l~------------------------~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~ 380 (606)
.| +||+||||||||++|.++|+.+. -.|+++++++..... . ....++++..
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~---i-~~~~vr~~~~ 99 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID---I-IVEQVRELAE 99 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc---c-hHHHHHHHHH
Confidence 45 99999999999999999999986 356666666543211 0 1233444443
Q ss_pred hhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 381 QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 381 ~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.....-......||+|||+|.++.. .+++|++.||.
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~--------------A~nallk~lEe 135 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED--------------AANALLKTLEE 135 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH--------------HHHHHHHHhcc
Confidence 3322212245679999999999987 99999999984
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=8.4e-10 Score=117.39 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=69.3
Q ss_pred cCC-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 275 VIG-QEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 275 VvG-qe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
|+| |+.+++.|..++... ..+..+||+||+|+||+++|+.+|+.+.+.-
T Consensus 7 i~~~q~~~~~~L~~~~~~~------------------------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~ 56 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN------------------------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLE 56 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC------------------------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCC
Confidence 566 999999998887411 0125579999999999999999999884321
Q ss_pred --ee------cchhhhhh--------cCCcccch-HHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcc
Q 007362 354 --VI------ADATTLTQ--------AGYVGEDV-ESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (606)
Q Consensus 354 --i~------i~~s~l~~--------sg~vG~~~-~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s 416 (606)
-. -+|..+.. ....|... -..++.+.+.....-..+...|+||||+|+++..
T Consensus 57 ~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~----------- 125 (329)
T PRK08058 57 RNGVEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS----------- 125 (329)
T ss_pred CCCCCCCCcCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-----------
Confidence 00 00000000 00001110 1234444433321112245679999999999888
Q ss_pred hhHHHHHHHHHHhc
Q 007362 417 GEGVQQALLKMLEG 430 (606)
Q Consensus 417 ~~~vq~~LL~~Leg 430 (606)
.+|+||+.||+
T Consensus 126 ---a~NaLLK~LEE 136 (329)
T PRK08058 126 ---AANSLLKFLEE 136 (329)
T ss_pred ---HHHHHHHHhcC
Confidence 99999999994
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.07 E-value=1e-09 Score=98.99 Aligned_cols=87 Identities=36% Similarity=0.583 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHH-HHHhhhhhhhhcCCCEEEEcccch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYK-LLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~-lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
.+++|+||||||||++++.+++.+ +.+++.+++....... .. ...... .............+.+|+|||++.
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~ 95 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGL-VV---AELFGHFLVRLLFELAEKAKPGVLFIDEIDS 95 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhh-HH---HHHhhhhhHhHHHHhhccCCCeEEEEeChhh
Confidence 689999999999999999999998 7888888887654221 00 000000 000111111223678999999998
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
+... ....+++.++.
T Consensus 96 ~~~~--------------~~~~~~~~i~~ 110 (151)
T cd00009 96 LSRG--------------AQNALLRVLET 110 (151)
T ss_pred hhHH--------------HHHHHHHHHHh
Confidence 8554 66777777763
No 195
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.06 E-value=1.2e-09 Score=109.85 Aligned_cols=175 Identities=19% Similarity=0.351 Sum_probs=102.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
..++||||+|+|||.|.+++++.+ +..++++++.++... +...-....+..+.+.. ..--+|+||+++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~~~~~~~~~~~~------~~~DlL~iDDi~ 107 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALRDGEIEEFKDRL------RSADLLIIDDIQ 107 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHHTTSHHHHHHHH------CTSSEEEEETGG
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHHcccchhhhhhh------hcCCEEEEecch
Confidence 468999999999999999999875 456777887766521 10000000011111111 134699999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
.+..+ +..|..|..+++... ..... +|+++...
T Consensus 108 ~l~~~------------~~~q~~lf~l~n~~~-------------------~~~k~-li~ts~~~--------------- 140 (219)
T PF00308_consen 108 FLAGK------------QRTQEELFHLFNRLI-------------------ESGKQ-LILTSDRP--------------- 140 (219)
T ss_dssp GGTTH------------HHHHHHHHHHHHHHH-------------------HTTSE-EEEEESS----------------
T ss_pred hhcCc------------hHHHHHHHHHHHHHH-------------------hhCCe-EEEEeCCC---------------
Confidence 88665 126788888877321 11112 23333211
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe--EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHH
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI--LVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~--iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~ 558 (606)
+.++ . .+.|.|.+||.. ++.+.+++.++..+|+.+. +
T Consensus 141 ----------------------------P~~l-~-~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~-----------a 179 (219)
T PF00308_consen 141 ----------------------------PSEL-S-GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKK-----------A 179 (219)
T ss_dssp ----------------------------TTTT-T-TS-HHHHHHHHCSEEEEE----HHHHHHHHHHH-----------H
T ss_pred ----------------------------Cccc-c-ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHH-----------H
Confidence 0000 1 156677788766 8889999999999998753 1
Q ss_pred hcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHH
Q 007362 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEA 600 (606)
Q Consensus 559 ~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~a 600 (606)
..++ +.++++++++|++. +. ...|+|..+|.++...+
T Consensus 180 ~~~~--~~l~~~v~~~l~~~-~~--~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 180 KERG--IELPEEVIEYLARR-FR--RDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHTT----S-HHHHHHHHHH-TT--SSHHHHHHHHHHHHHHH
T ss_pred HHhC--CCCcHHHHHHHHHh-hc--CCHHHHHHHHHHHHHHh
Confidence 2234 45999999999998 23 35699999998876543
No 196
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.04 E-value=6.3e-09 Score=106.68 Aligned_cols=62 Identities=19% Similarity=0.405 Sum_probs=45.6
Q ss_pred hccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHH
Q 007362 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (606)
Q Consensus 514 ~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~I 593 (606)
..+++++|++|+ .+|.-.+++++++.+|+... ++...+.++++++..|+..+- -+.|+-++
T Consensus 348 PhGip~dllDRl-~Iirt~~y~~~e~r~Ii~~R-------------a~~E~l~~~e~a~~~l~~~gt-----~tsLRy~v 408 (456)
T KOG1942|consen 348 PHGIPPDLLDRL-LIIRTLPYDEEEIRQIIKIR-------------AQVEGLQVEEEALDLLAEIGT-----STSLRYAV 408 (456)
T ss_pred CCCCCHHHhhhe-eEEeeccCCHHHHHHHHHHH-------------HhhhcceecHHHHHHHHhhcc-----chhHHHHH
Confidence 567889999998 67888899999999998742 122346699999999998631 24555555
Q ss_pred H
Q 007362 594 E 594 (606)
Q Consensus 594 e 594 (606)
+
T Consensus 409 q 409 (456)
T KOG1942|consen 409 Q 409 (456)
T ss_pred H
Confidence 4
No 197
>PRK04132 replication factor C small subunit; Provisional
Probab=99.03 E-value=1.6e-09 Score=126.79 Aligned_cols=166 Identities=22% Similarity=0.294 Sum_probs=112.2
Q ss_pred ccCCcEEEEc--CCCCHHHHHHHHHHHHh-----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhh--hhhcCCCE
Q 007362 323 LEKSNVLLMG--PTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFN--VEAAQQGM 393 (606)
Q Consensus 323 ~~~~~vLL~G--PpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~--l~~a~~~I 393 (606)
.+..+-+..| |.+.||||+|++||+.+ +..|+++++++.. |. ..+++........ +......|
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-----gi---d~IR~iIk~~a~~~~~~~~~~KV 633 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-----GI---NVIREKVKEFARTKPIGGASFKI 633 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-----cH---HHHHHHHHHHHhcCCcCCCCCEE
Confidence 3445667779 99999999999999998 4579999998743 11 2333433322111 11113469
Q ss_pred EEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHh
Q 007362 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISE 473 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~ 473 (606)
|||||+|+|+.. .|++|++.||. ...++.||+++|..
T Consensus 634 vIIDEaD~Lt~~--------------AQnALLk~lEe---------------------p~~~~~FILi~N~~-------- 670 (846)
T PRK04132 634 IFLDEADALTQD--------------AQQALRRTMEM---------------------FSSNVRFILSCNYS-------- 670 (846)
T ss_pred EEEECcccCCHH--------------HHHHHHHHhhC---------------------CCCCeEEEEEeCCh--------
Confidence 999999999887 99999999983 23455666665531
Q ss_pred hhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHH
Q 007362 474 RRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQ 553 (606)
Q Consensus 474 ~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~ 553 (606)
..+.+++.+|+ .++.|.+++.+++.+.+...
T Consensus 671 -----------------------------------------~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I------- 701 (846)
T PRK04132 671 -----------------------------------------SKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYI------- 701 (846)
T ss_pred -----------------------------------------hhCchHHhhhc-eEEeCCCCCHHHHHHHHHHH-------
Confidence 12567888887 68899999999888776532
Q ss_pred HHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 554 YKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 554 ~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
+...+ +.+++++++.|+..+ +-+.|..-+.++.+.
T Consensus 702 ----~~~Eg--i~i~~e~L~~Ia~~s---~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 702 ----AENEG--LELTEEGLQAILYIA---EGDMRRAINILQAAA 736 (846)
T ss_pred ----HHhcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 11223 457888898888763 223466666666543
No 198
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.03 E-value=1.1e-09 Score=125.22 Aligned_cols=48 Identities=38% Similarity=0.590 Sum_probs=39.7
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+-+.|+||+++++.|..++.. ..+++|+||||||||++|+++++.+
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~---------------------------------~~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQ---------------------------------RRHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHh---------------------------------CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3444489999999999887741 1579999999999999999999877
Q ss_pred C
Q 007362 350 N 350 (606)
Q Consensus 350 ~ 350 (606)
.
T Consensus 75 ~ 75 (637)
T PRK13765 75 P 75 (637)
T ss_pred C
Confidence 4
No 199
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.02 E-value=1.6e-09 Score=103.83 Aligned_cols=109 Identities=26% Similarity=0.321 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 277 GQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 277 Gqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
||+++++.|..++... ..+..+||+||+|+||+++|+.+|+.+...-...
T Consensus 1 gq~~~~~~L~~~~~~~------------------------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~ 50 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------------------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNE 50 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------------------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CT
T ss_pred CcHHHHHHHHHHHHcC------------------------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 8999999998887411 0125589999999999999999999884322110
Q ss_pred -------chh--------hhh---hcCC-cccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcch
Q 007362 357 -------DAT--------TLT---QAGY-VGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSG 417 (606)
Q Consensus 357 -------~~s--------~l~---~sg~-vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~ 417 (606)
+|. ++. ..+. .... ...++.+..........+...|++|||+|+|+..
T Consensus 51 ~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~-i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~------------ 117 (162)
T PF13177_consen 51 DPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIK-IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE------------ 117 (162)
T ss_dssp T--SSSHHHHHHHTT-CTTEEEEETTTSSSSBS-HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH------------
T ss_pred CCCCCCHHHHHHHhccCcceEEEecccccchhh-HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH------------
Confidence 000 000 0000 0011 2344455544433323346679999999999988
Q ss_pred hHHHHHHHHHHhc
Q 007362 418 EGVQQALLKMLEG 430 (606)
Q Consensus 418 ~~vq~~LL~~Leg 430 (606)
.+|+||+.||+
T Consensus 118 --a~NaLLK~LEe 128 (162)
T PF13177_consen 118 --AQNALLKTLEE 128 (162)
T ss_dssp --HHHHHHHHHHS
T ss_pred --HHHHHHHHhcC
Confidence 99999999995
No 200
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.02 E-value=3.8e-09 Score=116.70 Aligned_cols=172 Identities=17% Similarity=0.318 Sum_probs=106.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
.+++|+||+|+|||+|++++++.+ +..++++++..+... +...-..... ..|... .....+|+|||++.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-~~~~l~~~~~-~~f~~~-----~~~~dvLiIDDiq~l 214 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-LVSAIRSGEM-QRFRQF-----YRNVDALFIEDIEVF 214 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-HHHHHhcchH-HHHHHH-----cccCCEEEEcchhhh
Confidence 569999999999999999999876 567777777655421 1000000000 011111 124569999999987
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCc
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGF 482 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf 482 (606)
..+. ..|..|+.+++... +. ...+|+|++... .
T Consensus 215 ~~k~------------~~qeelf~l~N~l~-------------------~~-~k~IIlts~~~p-~-------------- 247 (445)
T PRK12422 215 SGKG------------ATQEEFFHTFNSLH-------------------TE-GKLIVISSTCAP-Q-------------- 247 (445)
T ss_pred cCCh------------hhHHHHHHHHHHHH-------------------HC-CCcEEEecCCCH-H--------------
Confidence 5431 15666666654211 00 112334443210 0
Q ss_pred CcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhc
Q 007362 483 GAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSM 560 (606)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~ 560 (606)
+ + ..+.+.+.+||. .++.+.+++.+++..|+.+.. . .
T Consensus 248 ----------------------------~-l-~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~-------~----~ 286 (445)
T PRK12422 248 ----------------------------D-L-KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA-------E----A 286 (445)
T ss_pred ----------------------------H-H-hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH-------H----H
Confidence 0 0 014567788885 689999999999999987531 1 1
Q ss_pred CCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATAKNTGARGLRAILESIL 597 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l 597 (606)
..+.++++++++|+.. +. -+.|.|...|++++
T Consensus 287 --~~~~l~~evl~~la~~-~~--~dir~L~g~l~~l~ 318 (445)
T PRK12422 287 --LSIRIEETALDFLIEA-LS--SNVKSLLHALTLLA 318 (445)
T ss_pred --cCCCCCHHHHHHHHHh-cC--CCHHHHHHHHHHHH
Confidence 2367999999999986 33 35699999999885
No 201
>PRK06620 hypothetical protein; Validated
Probab=98.98 E-value=5.5e-09 Score=104.71 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=49.0
Q ss_pred ccccccCCe--EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHH
Q 007362 519 PEFVGRFPI--LVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESI 596 (606)
Q Consensus 519 PeLl~R~d~--iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~ 596 (606)
|.|.+|+.. ++.+.+++.+++..++.+... .. .+.++++++++|+++. .-.+|.|..+|+.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~-----------~~--~l~l~~ev~~~L~~~~---~~d~r~l~~~l~~l 193 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFS-----------IS--SVTISRQIIDFLLVNL---PREYSKIIEILENI 193 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHH-----------Hc--CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 677788753 788999999998888775311 12 3669999999999983 34569999999986
Q ss_pred HHHH
Q 007362 597 LTEA 600 (606)
Q Consensus 597 l~~a 600 (606)
-..+
T Consensus 194 ~~~~ 197 (214)
T PRK06620 194 NYFA 197 (214)
T ss_pred HHHH
Confidence 4433
No 202
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.98 E-value=2.2e-09 Score=122.43 Aligned_cols=248 Identities=19% Similarity=0.279 Sum_probs=141.6
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHH
Q 007362 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 267 l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA 346 (606)
+.+++.-.|.|.+.+|++|.-++... .++. ......+ .-..||||.|.||||||.|.+.++
T Consensus 280 l~~SiaPsIyG~e~VKkAilLqLfgG--------v~k~----------~~~g~~i-RGDInILLvGDPgtaKSqlLk~v~ 340 (682)
T COG1241 280 LIKSIAPSIYGHEDVKKAILLQLFGG--------VKKN----------LPDGTRI-RGDIHILLVGDPGTAKSQLLKYVA 340 (682)
T ss_pred HHHHhcccccCcHHHHHHHHHHhcCC--------Cccc----------CCCCccc-ccceeEEEcCCCchhHHHHHHHHH
Confidence 34445555899999999997766411 1110 0000001 113799999999999999999999
Q ss_pred HHhCCce-eecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHH
Q 007362 347 RHVNVPF-VIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (606)
Q Consensus 347 ~~l~~~f-i~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL 425 (606)
+.+-..+ .+..++.- .|+...-.......-+....+.+..+.+||+.|||+|++... .+.+|.
T Consensus 341 ~~aPr~vytsgkgss~--~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~--------------dr~aih 404 (682)
T COG1241 341 KLAPRGVYTSGKGSSA--AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE--------------DRVAIH 404 (682)
T ss_pred hhCCceEEEccccccc--cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH--------------HHHHHH
Confidence 9884332 22222211 111110000000000111223445678999999999999887 899999
Q ss_pred HHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHh
Q 007362 426 KMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLE 505 (606)
Q Consensus 426 ~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~ 505 (606)
+.||...+++.+.|. .-.++++ +-++++.|..- ++++.. ..+.+
T Consensus 405 EaMEQQtIsIaKAGI-------~atLnAR-csvLAAaNP~~-------Gryd~~---------------------~~~~e 448 (682)
T COG1241 405 EAMEQQTISIAKAGI-------TATLNAR-CSVLAAANPKF-------GRYDPK---------------------KTVAE 448 (682)
T ss_pred HHHHhcEeeecccce-------eeecchh-hhhhhhhCCCC-------CcCCCC---------------------CCHHH
Confidence 999988888877762 1123333 33444555320 122111 11222
Q ss_pred hhcchhhhhccCcccccccCCeEEEcC-CcCHHHHHHHHhhhHH------------------------HHHHHHHHHHhc
Q 007362 506 SVESSDLIAYGLIPEFVGRFPILVSLT-ALTEDQLVKVLTEPKN------------------------ALGKQYKRLFSM 560 (606)
Q Consensus 506 ~~~~~~l~~~~l~PeLl~R~d~iI~f~-~Ls~eel~~Il~~~l~------------------------~L~k~~~~~~~~ 560 (606)
++. |.++|++|||.++.+. ..+++.-..|....+. .++++|......
T Consensus 449 nI~--------l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~ 520 (682)
T COG1241 449 NIN--------LPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARK 520 (682)
T ss_pred hcC--------CChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhc
Confidence 332 8889999999976654 4444323333333222 235555554433
Q ss_pred CCcccccCHHHHHHHHHccCC-------------CCCChHHHHHHHH
Q 007362 561 NNVKLHFTEKALRVIAKKATA-------------KNTGARGLRAILE 594 (606)
Q Consensus 561 ~~i~l~i~e~al~~La~~a~~-------------~~~GAR~L~~~Ie 594 (606)
.+...+++++.+.|.++... --..+|.|..+|.
T Consensus 521 -~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiR 566 (682)
T COG1241 521 -NVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIR 566 (682)
T ss_pred -cCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHH
Confidence 35567999999998876321 1145888888885
No 203
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.97 E-value=4.6e-09 Score=116.29 Aligned_cols=181 Identities=16% Similarity=0.273 Sum_probs=111.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-----CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
.+++|+|++|+|||+|++++++.+ +..++++++.++... +... ..... ..+...... ....-+|+|||++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~-~~~~-l~~~~-~~~~~~~~~--~~~~dvLiIDDiq 216 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK-AVDI-LQKTH-KEIEQFKNE--ICQNDVLIIDDVQ 216 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHH-HHHhh-hHHHHHHHH--hccCCEEEEeccc
Confidence 569999999999999999999865 356677777766521 1100 00000 011111100 1134699999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCC
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSI 480 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~i 480 (606)
.+..+. ..+..|..+++... +... .+|+|++... +
T Consensus 217 ~l~~k~------------~~~e~lf~l~N~~~-------------------~~~k-~iIltsd~~P--~----------- 251 (450)
T PRK14087 217 FLSYKE------------KTNEIFFTIFNNFI-------------------ENDK-QLFFSSDKSP--E----------- 251 (450)
T ss_pred cccCCH------------HHHHHHHHHHHHHH-------------------HcCC-cEEEECCCCH--H-----------
Confidence 875431 25667777665211 1111 1234443210 0
Q ss_pred CcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe--EEEcCCcCHHHHHHHHhhhHHHHHHHHHHHH
Q 007362 481 GFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI--LVSLTALTEDQLVKVLTEPKNALGKQYKRLF 558 (606)
Q Consensus 481 gf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~--iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~ 558 (606)
.+ ..+.+.+.+||.. ++.+.+++.+++.+|+.+.+.
T Consensus 252 ----------------------~l----------~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~---------- 289 (450)
T PRK14087 252 ----------------------LL----------NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIK---------- 289 (450)
T ss_pred ----------------------HH----------hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHH----------
Confidence 00 1245677788753 888999999999999985311
Q ss_pred hcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHH
Q 007362 559 SMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 559 ~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
..+..+.++++++++|++.. .-.+|.|..++.+++..++.
T Consensus 290 -~~gl~~~l~~evl~~Ia~~~---~gd~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 290 -NQNIKQEVTEEAINFISNYY---SDDVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred -hcCCCCCCCHHHHHHHHHcc---CCCHHHHHHHHHHHHHHHhc
Confidence 22444579999999999973 33579999999988876654
No 204
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.1e-08 Score=110.45 Aligned_cols=185 Identities=23% Similarity=0.267 Sum_probs=112.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCc-----eeecchhhhhhc--------------CCcccchHHHHHHHHHhhhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP-----FVIADATTLTQA--------------GYVGEDVESILYKLLAQAEFN 385 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~-----fi~i~~s~l~~s--------------g~vG~~~~~~l~~lf~~a~~~ 385 (606)
+.+++++|+||||||.+++.+.+++... ++++||..+... -..|......+..+.+....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~- 120 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK- 120 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh-
Confidence 3679999999999999999999988433 788998764421 01111211222222221111
Q ss_pred hhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCc
Q 007362 386 VEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (606)
Q Consensus 386 l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~ 465 (606)
....-||+|||+|.|..... +++-.|+...+. ....+++|+.+|..
T Consensus 121 --~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~---------------------~~~~v~vi~i~n~~ 166 (366)
T COG1474 121 --KGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGE---------------------NKVKVSIIAVSNDD 166 (366)
T ss_pred --cCCeEEEEEcchhhhccccc-----------hHHHHHHhhccc---------------------cceeEEEEEEeccH
Confidence 23457999999999987621 144444444221 03345566555533
Q ss_pred ChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcCCcCHHHHHHHHh
Q 007362 466 DLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVKVLT 544 (606)
Q Consensus 466 ~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls~eel~~Il~ 544 (606)
++.+. +.|-+.+++.. .|.|+|++.+|+..|+.
T Consensus 167 ~~~~~----------------------------------------------ld~rv~s~l~~~~I~F~pY~a~el~~Il~ 200 (366)
T COG1474 167 KFLDY----------------------------------------------LDPRVKSSLGPSEIVFPPYTAEELYDILR 200 (366)
T ss_pred HHHHH----------------------------------------------hhhhhhhccCcceeeeCCCCHHHHHHHHH
Confidence 22221 33444444443 58999999999999998
Q ss_pred hhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHH
Q 007362 545 EPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAM 601 (606)
Q Consensus 545 ~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al 601 (606)
.... ..+ ..-.+++++++.++..+....-.||---.++.....-|-
T Consensus 201 ~R~~-------~~~----~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 201 ERVE-------EGF----SAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHH-------hhc----cCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 5311 111 223488999999998766555578877777776665554
No 205
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=9.9e-09 Score=115.14 Aligned_cols=191 Identities=24% Similarity=0.293 Sum_probs=125.2
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHhC----CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcc
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHVN----VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDE 398 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l~----~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDE 398 (606)
....+|||+||+|+|||.|++++++++. +.+..++|+.+.... -+...+.+...|..+-.. .|+||+||+
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~~----~PSiIvLDd 502 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALWY----APSIIVLDD 502 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHHHhh----CCcEEEEcc
Confidence 3458999999999999999999999883 456688898876443 123355667777777665 899999999
Q ss_pred cchhhhhhhccccccCcchhHHHHHHH-HHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcc
Q 007362 399 VDKITKKAESLNISRDVSGEGVQQALL-KMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQD 477 (606)
Q Consensus 399 iD~l~~~r~~~~~~~~~s~~~vq~~LL-~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~ 477 (606)
+|.+... .+.+.+.+.........++ +++..+. -+.+.+.||+++....
T Consensus 503 ld~l~~~-s~~e~~q~~~~~~rla~flnqvi~~y~------------------~~~~~ia~Iat~qe~q----------- 552 (952)
T KOG0735|consen 503 LDCLASA-SSNENGQDGVVSERLAAFLNQVIKIYL------------------KRNRKIAVIATGQELQ----------- 552 (952)
T ss_pred hhhhhcc-CcccCCcchHHHHHHHHHHHHHHHHHH------------------ccCcEEEEEEechhhh-----------
Confidence 9988762 2223333333333333344 3332111 1223356676654210
Q ss_pred cCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCccccc--ccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHH
Q 007362 478 SSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFV--GRFPILVSLTALTEDQLVKVLTEPKNALGKQYK 555 (606)
Q Consensus 478 ~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl--~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~ 555 (606)
.++|-|. .+|+.++.++++...+..+|+...+...
T Consensus 553 --------------------------------------tl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~----- 589 (952)
T KOG0735|consen 553 --------------------------------------TLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN----- 589 (952)
T ss_pred --------------------------------------hcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh-----
Confidence 0111111 2788899999999999999988642211
Q ss_pred HHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHH
Q 007362 556 RLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 556 ~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
. +.+..+.++.|+.+ .++|-+++|.-++++++.+++.
T Consensus 590 ------~--~~~~~~dLd~ls~~--TEGy~~~DL~ifVeRai~~a~l 626 (952)
T KOG0735|consen 590 ------L--SDITMDDLDFLSVK--TEGYLATDLVIFVERAIHEAFL 626 (952)
T ss_pred ------h--hhhhhHHHHHHHHh--cCCccchhHHHHHHHHHHHHHH
Confidence 1 22445667778877 6888899999999999988873
No 206
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.7e-08 Score=116.35 Aligned_cols=192 Identities=22% Similarity=0.284 Sum_probs=127.9
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHH
Q 007362 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 268 ~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~ 347 (606)
...|+- |+|.++.++.+.+.+.+ ..+.|-+|.|+||+|||.++..+|.
T Consensus 166 ~gklDP-vIGRd~EI~r~iqIL~R-------------------------------R~KNNPvLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 166 EGKLDP-VIGRDEEIRRTIQILSR-------------------------------RTKNNPVLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred cCCCCC-CcChHHHHHHHHHHHhc-------------------------------cCCCCCeEecCCCCCHHHHHHHHHH
Confidence 334444 89999999999887752 1247889999999999999999997
Q ss_pred Hh----------CCceeecchhhhh-hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcc
Q 007362 348 HV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVS 416 (606)
Q Consensus 348 ~l----------~~~fi~i~~s~l~-~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s 416 (606)
.. +..++.+|+..+. .++|.|+- +..++.+++..... .+.||||||||.+...-.....+.+
T Consensus 214 rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeF-EeRlk~vl~ev~~~----~~vILFIDEiHtiVGAG~~~G~a~D-- 286 (786)
T COG0542 214 RIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEF-EERLKAVLKEVEKS----KNVILFIDEIHTIVGAGATEGGAMD-- 286 (786)
T ss_pred HHhcCCCCHHHcCCEEEEecHHHHhccccccCcH-HHHHHHHHHHHhcC----CCeEEEEechhhhcCCCcccccccc--
Confidence 65 4567788888766 35788876 66777777766543 5789999999988765221110233
Q ss_pred hhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccch
Q 007362 417 GEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTD 496 (606)
Q Consensus 417 ~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~ 496 (606)
+-|.|-..|..+. +-.|.+++..+
T Consensus 287 ---AaNiLKPaLARGe-----------------------L~~IGATT~~E------------------------------ 310 (786)
T COG0542 287 ---AANLLKPALARGE-----------------------LRCIGATTLDE------------------------------ 310 (786)
T ss_pred ---hhhhhHHHHhcCC-----------------------eEEEEeccHHH------------------------------
Confidence 6777777776211 12334444321
Q ss_pred hHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHH
Q 007362 497 AAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIA 576 (606)
Q Consensus 497 ~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La 576 (606)
+.+.++ -+++|-.||. .|.+..++.++-..|++- +..+|.. .+.+.++++|+...+
T Consensus 311 ------YRk~iE--------KD~AL~RRFQ-~V~V~EPs~e~ti~ILrG----lk~~yE~-----hH~V~i~D~Al~aAv 366 (786)
T COG0542 311 ------YRKYIE--------KDAALERRFQ-KVLVDEPSVEDTIAILRG----LKERYEA-----HHGVRITDEALVAAV 366 (786)
T ss_pred ------HHHHhh--------hchHHHhcCc-eeeCCCCCHHHHHHHHHH----HHHHHHH-----ccCceecHHHHHHHH
Confidence 111222 2467777884 677889999999999875 4444433 233557788777666
Q ss_pred Hc
Q 007362 577 KK 578 (606)
Q Consensus 577 ~~ 578 (606)
..
T Consensus 367 ~L 368 (786)
T COG0542 367 TL 368 (786)
T ss_pred HH
Confidence 54
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.91 E-value=1.2e-08 Score=108.95 Aligned_cols=63 Identities=25% Similarity=0.289 Sum_probs=45.9
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+++.|+|+++++++|.+.+..... +. ...+..++|.||||+||||+|++|++.++
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~-----g~--------------------~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ-----GL--------------------EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh-----cC--------------------CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444599999999999877742211 00 01136799999999999999999999986
Q ss_pred C-------ceeecch
Q 007362 351 V-------PFVIADA 358 (606)
Q Consensus 351 ~-------~fi~i~~ 358 (606)
. +++.+..
T Consensus 104 ~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 104 EYSKTPEGRRYTFKW 118 (361)
T ss_pred hhcccccCceEEEEe
Confidence 4 6666554
No 208
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=6.7e-09 Score=110.51 Aligned_cols=88 Identities=24% Similarity=0.306 Sum_probs=57.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee--cch------hhhh----------hc----CCcccchHHHHHHHHHhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI--ADA------TTLT----------QA----GYVGEDVESILYKLLAQAE 383 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~--i~~------s~l~----------~s----g~vG~~~~~~l~~lf~~a~ 383 (606)
..+||+||+|+|||++|+.+|+.+.+.--. ..| ..+. .. ..++ -..++++.+...
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~---id~iR~l~~~~~ 99 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIK---VDQVRELVSFVV 99 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCC---HHHHHHHHHHHh
Confidence 569999999999999999999998542100 000 0000 00 0111 234555544443
Q ss_pred hhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 384 ~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.....+...|++|||+|+++.. .+|+||+.||+
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~~--------------aaNaLLK~LEE 132 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRN--------------AANALLKSLEE 132 (328)
T ss_pred hccccCCCeEEEECChhhCCHH--------------HHHHHHHHHhC
Confidence 3323346679999999999988 99999999995
No 209
>PRK09087 hypothetical protein; Validated
Probab=98.89 E-value=9.6e-09 Score=103.80 Aligned_cols=69 Identities=12% Similarity=0.171 Sum_probs=50.6
Q ss_pred cccccccCC--eEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHH
Q 007362 518 IPEFVGRFP--ILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILES 595 (606)
Q Consensus 518 ~PeLl~R~d--~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~ 595 (606)
.|.+.+|+. .++.+.+++.+++.+|+.+.+. . ..+.++++++++|+++. . -..|.|..++.+
T Consensus 135 ~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~-----------~--~~~~l~~ev~~~La~~~-~--r~~~~l~~~l~~ 198 (226)
T PRK09087 135 LPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA-----------D--RQLYVDPHVVYYLVSRM-E--RSLFAAQTIVDR 198 (226)
T ss_pred cccHHHHHhCCceeecCCCCHHHHHHHHHHHHH-----------H--cCCCCCHHHHHHHHHHh-h--hhHHHHHHHHHH
Confidence 577888886 4899999999999999885321 1 24679999999999983 2 234677776666
Q ss_pred HHHHHHH
Q 007362 596 ILTEAMY 602 (606)
Q Consensus 596 ~l~~al~ 602 (606)
+...++.
T Consensus 199 L~~~~~~ 205 (226)
T PRK09087 199 LDRLALE 205 (226)
T ss_pred HHHHHHH
Confidence 6655544
No 210
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.86 E-value=3e-08 Score=110.27 Aligned_cols=253 Identities=19% Similarity=0.274 Sum_probs=143.8
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHH
Q 007362 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 267 l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA 346 (606)
|..+|.-.|.|.|.+|.-|.-.+. .+.++-.+ ..-++ .-..||++.|.|||||+-+.++++
T Consensus 339 lv~Sl~PsIyGhe~VK~GilL~Lf--------GGv~K~a~----------eg~~l-RGDinv~iVGDPgt~KSQfLk~v~ 399 (764)
T KOG0480|consen 339 LVNSLFPSIYGHELVKAGILLSLF--------GGVHKSAG----------EGTSL-RGDINVCIVGDPGTGKSQFLKAVC 399 (764)
T ss_pred HHHhhCccccchHHHHhhHHHHHh--------CCccccCC----------CCccc-cCCceEEEeCCCCccHHHHHHHHh
Confidence 445555558999999998876664 11111111 00111 124799999999999999999999
Q ss_pred HHhCCcee-ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHH
Q 007362 347 RHVNVPFV-IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (606)
Q Consensus 347 ~~l~~~fi-~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL 425 (606)
..+-...+ .-+++. .+|+...-+......-|.-..+.+..+..+|.-|||+|++..+ -|.+|+
T Consensus 400 ~fsPR~vYtsGkaSS--aAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~--------------dqvAih 463 (764)
T KOG0480|consen 400 AFSPRSVYTSGKASS--AAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK--------------DQVAIH 463 (764)
T ss_pred ccCCcceEecCcccc--cccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH--------------hHHHHH
Confidence 88744332 222221 1111000000000000111112344568899999999999876 799999
Q ss_pred HHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHh
Q 007362 426 KMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLE 505 (606)
Q Consensus 426 ~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~ 505 (606)
+.||...++|.+.|-. -.++++-. +|.++|... +.. .....+.+
T Consensus 464 EAMEQQtISIaKAGv~-------aTLnARtS-IlAAANPv~----------------GhY------------dR~ktl~e 507 (764)
T KOG0480|consen 464 EAMEQQTISIAKAGVV-------ATLNARTS-ILAAANPVG----------------GHY------------DRKKTLRE 507 (764)
T ss_pred HHHHhheehheecceE-------Eeecchhh-hhhhcCCcC----------------Ccc------------ccccchhh
Confidence 9999988888777632 13444443 333444331 111 11234555
Q ss_pred hhcchhhhhccCcccccccCCeE-EEcCCcCHHHHHHHHhhhH-----------------HHHHHHHHHHHhcCCccccc
Q 007362 506 SVESSDLIAYGLIPEFVGRFPIL-VSLTALTEDQLVKVLTEPK-----------------NALGKQYKRLFSMNNVKLHF 567 (606)
Q Consensus 506 ~~~~~~l~~~~l~PeLl~R~d~i-I~f~~Ls~eel~~Il~~~l-----------------~~L~k~~~~~~~~~~i~l~i 567 (606)
+++ +.+++++|||.+ |-+...++..=..|....+ .+..++|.... ++++-.+
T Consensus 508 Ni~--------msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yA--R~~~P~l 577 (764)
T KOG0480|consen 508 NIN--------MSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYA--RNFKPKL 577 (764)
T ss_pred hcC--------CCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHH--HhcCccc
Confidence 555 889999999995 4466676643333333211 12233343332 2566678
Q ss_pred CHHHHHHHHHccC-------------CCCCChHHHHHHHHHHHHHHHH
Q 007362 568 TEKALRVIAKKAT-------------AKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 568 ~e~al~~La~~a~-------------~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
+.++.+.|.++.- .....+|+|..+|. +.+|+.
T Consensus 578 s~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIR--LsEA~A 623 (764)
T KOG0480|consen 578 SKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIR--LSEARA 623 (764)
T ss_pred cHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHH--HHHHHH
Confidence 8888887776411 22456899988884 444443
No 211
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.84 E-value=1.3e-07 Score=96.82 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=48.7
Q ss_pred cccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHH
Q 007362 520 EFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTE 599 (606)
Q Consensus 520 eLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~ 599 (606)
.+.+|+...+.+++++.+|+..++...+... .......+++++++.|++.+ .++ .|.+..+...++..
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~---------g~~~~~~~~~~~~~~i~~~s-~G~--p~~i~~l~~~~~~~ 245 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERA---------GNRDAPVFSEGAFDAIHRFS-RGI--PRLINILCDRLLLS 245 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHc---------CCCCCCCcCHHHHHHHHHHc-CCc--ccHHHHHHHHHHHH
Confidence 4677887889999999999888877532111 11123458999999999873 222 46788877777766
Q ss_pred HHH
Q 007362 600 AMY 602 (606)
Q Consensus 600 al~ 602 (606)
+..
T Consensus 246 a~~ 248 (269)
T TIGR03015 246 AFL 248 (269)
T ss_pred HHH
Confidence 544
No 212
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.81 E-value=2e-08 Score=112.40 Aligned_cols=231 Identities=17% Similarity=0.281 Sum_probs=129.0
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHH
Q 007362 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 267 l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA 346 (606)
|...+...|.|+|.+|+.|.-.+. ....+. ...+. . -....||||+|.||||||.+.+.++
T Consensus 423 La~SiAPsIye~edvKkglLLqLf-------GGt~k~-~~~~~----------~-~R~~INILL~GDPGtsKSqlLqyv~ 483 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLF-------GGTRKE-DEKSG----------R-FRGDINILLVGDPGTSKSQLLQYCH 483 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHh-------cCCccc-ccccc----------c-ccccceEEEecCCCcCHHHHHHHHH
Confidence 455566668999999998866654 111111 00000 0 0123799999999999999999999
Q ss_pred HHhCCcee-ecchhhhhh-cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHH
Q 007362 347 RHVNVPFV-IADATTLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQAL 424 (606)
Q Consensus 347 ~~l~~~fi-~i~~s~l~~-sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~L 424 (606)
+.+-.-.+ .-..+.-.. .-|+-.+.+ -+++.- ..+.+..+.++|.-|||+||+..+ .++.|
T Consensus 484 ~l~pRg~yTSGkGsSavGLTayVtrd~d--tkqlVL-esGALVLSD~GiCCIDEFDKM~dS--------------trSvL 546 (804)
T KOG0478|consen 484 RLLPRGVYTSGKGSSAVGLTAYVTKDPD--TRQLVL-ESGALVLSDNGICCIDEFDKMSDS--------------TRSVL 546 (804)
T ss_pred HhCCcceeecCCccchhcceeeEEecCc--cceeee-ecCcEEEcCCceEEchhhhhhhHH--------------HHHHH
Confidence 99843222 111111000 001111100 011111 122344568899999999999887 89999
Q ss_pred HHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHH
Q 007362 425 LKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLL 504 (606)
Q Consensus 425 L~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll 504 (606)
++.||...++|...|.. -.++++..|+.++ |.. ++.-.+. ..+.
T Consensus 547 hEvMEQQTvSIAKAGII-------~sLNAR~SVLAaA-NP~-----------~skynp~-----------------k~i~ 590 (804)
T KOG0478|consen 547 HEVMEQQTLSIAKAGII-------ASLNARCSVLAAA-NPI-----------RSKYNPN-----------------KSII 590 (804)
T ss_pred HHHHHHhhhhHhhccee-------eeccccceeeeee-ccc-----------cccCCCC-----------------Cchh
Confidence 99999888888887732 2455665555543 321 0111111 1233
Q ss_pred hhhcchhhhhccCcccccccCCeEEE-cCCcCHH-HH---HHHHhhhHH------------HHHHHHHHHHhcCCccccc
Q 007362 505 ESVESSDLIAYGLIPEFVGRFPILVS-LTALTED-QL---VKVLTEPKN------------ALGKQYKRLFSMNNVKLHF 567 (606)
Q Consensus 505 ~~~~~~~l~~~~l~PeLl~R~d~iI~-f~~Ls~e-el---~~Il~~~l~------------~L~k~~~~~~~~~~i~l~i 567 (606)
+++. +.|.|++|||.++- |.+.++. |. ..|+..+.. .+.+.|.... .+.+...+
T Consensus 591 eNI~--------LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yA-rk~i~p~l 661 (804)
T KOG0478|consen 591 ENIN--------LPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYA-RKNIHPAL 661 (804)
T ss_pred hccC--------CChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHH-hccCCccc
Confidence 3443 89999999999654 5555553 11 112222221 1233333332 23445567
Q ss_pred CHHHHHHHHHc
Q 007362 568 TEKALRVIAKK 578 (606)
Q Consensus 568 ~e~al~~La~~ 578 (606)
++++.+.|...
T Consensus 662 ~~ea~~~l~~a 672 (804)
T KOG0478|consen 662 SPEASQALIQA 672 (804)
T ss_pred cHHHHHHHHHH
Confidence 78887777654
No 213
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.77 E-value=1e-07 Score=104.44 Aligned_cols=124 Identities=23% Similarity=0.302 Sum_probs=67.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCC--ceeecchh---------hhhh---cCCcccch-HHHHHHHHHhhhhhhhhc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNV--PFVIADAT---------TLTQ---AGYVGEDV-ESILYKLLAQAEFNVEAA 389 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~--~fi~i~~s---------~l~~---sg~vG~~~-~~~l~~lf~~a~~~l~~a 389 (606)
..+++|+||||||||++|+.+|..+.. .+..+.+. +++. ...+|... ...+..+...+... ..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~--p~ 271 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQ--PE 271 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhc--cc
Confidence 379999999999999999999998843 11111111 2220 11122221 12233333333221 12
Q ss_pred CCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhcee----eecCCCCcccCCCCCcEEEecCceeeeccCCCc
Q 007362 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTI----VNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (606)
Q Consensus 390 ~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~----~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~ 465 (606)
.+.|||||||++...+ .+...|+.+||... ..++-... . .....+ .--.|+.||+|.|..
T Consensus 272 ~~~vliIDEINRani~-------------kiFGel~~lLE~~~rg~~~~v~l~y~-e-~d~e~f-~iP~Nl~IIgTMNt~ 335 (459)
T PRK11331 272 KKYVFIIDEINRANLS-------------KVFGEVMMLMEHDKRGENWSVPLTYS-E-NDEERF-YVPENVYIIGLMNTA 335 (459)
T ss_pred CCcEEEEehhhccCHH-------------Hhhhhhhhhccccccccccceeeecc-c-cccccc-cCCCCeEEEEecCcc
Confidence 5689999999987755 26777888888321 01100000 0 000112 234788889888865
Q ss_pred C
Q 007362 466 D 466 (606)
Q Consensus 466 ~ 466 (606)
|
T Consensus 336 D 336 (459)
T PRK11331 336 D 336 (459)
T ss_pred c
Confidence 3
No 214
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.75 E-value=3.1e-09 Score=113.20 Aligned_cols=156 Identities=19% Similarity=0.270 Sum_probs=81.2
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHH
Q 007362 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 267 l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA 346 (606)
+.+.+.-.|+|.+.+|..|.-.+... ..+.. ....-.....|+||.|.||||||.|.+.++
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~-------~~~~~------------~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~ 78 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGG-------VEKND------------PDGTRIRGNIHILLVGDPGTGKSQLLKYVA 78 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT---------SCCC------------CT-TEE--S--EEEECSCHHCHHHHHHCCC
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhc-------ccccc------------ccccccccccceeeccchhhhHHHHHHHHH
Confidence 45556666999999999886555311 11000 000001224799999999999999999887
Q ss_pred HHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHH
Q 007362 347 RHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLK 426 (606)
Q Consensus 347 ~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~ 426 (606)
+..... +++++......|+...-.......-+.-..+.+..+.++|++|||+|++... .++.|++
T Consensus 79 ~~~pr~-v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~--------------~~~~l~e 143 (331)
T PF00493_consen 79 KLAPRS-VYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED--------------DRDALHE 143 (331)
T ss_dssp CT-SSE-EEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH--------------HHHHHHH
T ss_pred hhCCce-EEECCCCcccCCccceeccccccceeEEeCCchhcccCceeeecccccccch--------------HHHHHHH
Confidence 665322 2233222211221111000000000000122345568899999999999887 8999999
Q ss_pred HHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCC
Q 007362 427 MLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (606)
Q Consensus 427 ~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~ 464 (606)
+||...+++...|. ...+.++.. +++++|.
T Consensus 144 aMEqq~isi~kagi-------~~~l~ar~s-vlaa~NP 173 (331)
T PF00493_consen 144 AMEQQTISIAKAGI-------VTTLNARCS-VLAAANP 173 (331)
T ss_dssp HHHCSCEEECTSSS-------EEEEE---E-EEEEE--
T ss_pred HHHcCeeccchhhh-------cccccchhh-hHHHHhh
Confidence 99988888876652 334555544 4445553
No 215
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=2.1e-07 Score=106.50 Aligned_cols=59 Identities=19% Similarity=0.293 Sum_probs=42.9
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 270 GLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 270 ~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+++ |+||++.++.|..++.... .. ..+...++|+||||||||++++++|+.+
T Consensus 82 ~lde-l~~~~~ki~~l~~~l~~~~-------~~-------------------~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 82 TQHE-LAVHKKKIEEVETWLKAQV-------LE-------------------NAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CHHH-hcCcHHHHHHHHHHHHhcc-------cc-------------------cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 8999999998887774210 00 0012459999999999999999999999
Q ss_pred CCceee
Q 007362 350 NVPFVI 355 (606)
Q Consensus 350 ~~~fi~ 355 (606)
+..+++
T Consensus 135 ~~~~~E 140 (637)
T TIGR00602 135 GIQVQE 140 (637)
T ss_pred hhHHHH
Confidence 876654
No 216
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=8.1e-08 Score=101.98 Aligned_cols=88 Identities=19% Similarity=0.286 Sum_probs=57.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCcee--ecchhh------h----------h---hcCCcccchHHHHHHHHHhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV--IADATT------L----------T---QAGYVGEDVESILYKLLAQAEF 384 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi--~i~~s~------l----------~---~sg~vG~~~~~~l~~lf~~a~~ 384 (606)
..+||+||.|+||+++|+.+|+.+.+.-- ...|.. + . +...++ ...++++.+....
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~---id~iR~l~~~~~~ 101 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIG---VDQVREINEKVSQ 101 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCC---HHHHHHHHHHHhh
Confidence 67899999999999999999998854210 001110 0 0 001112 2234454443333
Q ss_pred hhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 385 NVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 385 ~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
....+...|++||++|+++.. .+|+||+.||+
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~--------------AaNaLLKtLEE 133 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA--------------AANALLKTLEE 133 (325)
T ss_pred ccccCCceEEEEechhhhCHH--------------HHHHHHHHhcC
Confidence 223345679999999999988 99999999995
No 217
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=9.4e-08 Score=101.29 Aligned_cols=91 Identities=29% Similarity=0.364 Sum_probs=55.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee----cchhhhhhc----C--Cc-------ccc-----hHHHHHHHHHhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI----ADATTLTQA----G--YV-------GED-----VESILYKLLAQAE 383 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~----i~~s~l~~s----g--~v-------G~~-----~~~~l~~lf~~a~ 383 (606)
..+||+||+|+||+++|.++|+.+.+.-.. ..+-.+... + ++ |.. .-..++++.+...
T Consensus 27 HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~ 106 (319)
T PRK08769 27 HGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLA 106 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHh
Confidence 459999999999999999999988432100 000001100 0 01 100 0223444443332
Q ss_pred hhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 384 ~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
..-..+...|++||++|+|+.. ..|+||+.||+
T Consensus 107 ~~p~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 139 (319)
T PRK08769 107 LTPQYGIAQVVIVDPADAINRA--------------ACNALLKTLEE 139 (319)
T ss_pred hCcccCCcEEEEeccHhhhCHH--------------HHHHHHHHhhC
Confidence 2222235579999999999888 99999999995
No 218
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.73 E-value=1.1e-07 Score=97.25 Aligned_cols=163 Identities=23% Similarity=0.429 Sum_probs=102.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-C--Cceeecchhh---------------------hhhcCCcccchHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-N--VPFVIADATT---------------------LTQAGYVGEDVESILYKLLAQ 381 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-~--~~fi~i~~s~---------------------l~~sg~vG~~~~~~l~~lf~~ 381 (606)
.|+++|||+|+||.|.+.+|-+++ | ++-+.+.... +..+ -.|..+.-.+.+++.+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPS-DaG~~DRvViQellKe 113 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPS-DAGNYDRVVIQELLKE 113 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChh-hcCcccHHHHHHHHHH
Confidence 799999999999999999998887 2 2111111111 1111 1344445455555543
Q ss_pred hh----hhhhh-cCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCce
Q 007362 382 AE----FNVEA-AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDI 456 (606)
Q Consensus 382 a~----~~l~~-a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~ni 456 (606)
.. ..... ..-.+++|.|+|+|+.+ +|.+|.+.||-. ..+-.+
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~d--------------AQ~aLRRTMEkY-------------------s~~~Rl 160 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRD--------------AQHALRRTMEKY-------------------SSNCRL 160 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHH--------------HHHHHHHHHHHH-------------------hcCceE
Confidence 22 11111 23469999999999998 999999999931 112234
Q ss_pred eeeccCCCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCH
Q 007362 457 LFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTE 536 (606)
Q Consensus 457 i~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~ 536 (606)
|++|.+.. .+.+++.+|+ ..|..+.++.
T Consensus 161 Il~cns~S---------------------------------------------------riIepIrSRC-l~iRvpaps~ 188 (351)
T KOG2035|consen 161 ILVCNSTS---------------------------------------------------RIIEPIRSRC-LFIRVPAPSD 188 (351)
T ss_pred EEEecCcc---------------------------------------------------cchhHHhhhe-eEEeCCCCCH
Confidence 44443221 1556777776 5788999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHH
Q 007362 537 DQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (606)
Q Consensus 537 eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~I 593 (606)
+|+..++.+. ++.++ +.+.++.+..|+++. -|.|++.|
T Consensus 189 eeI~~vl~~v-----------~~kE~--l~lp~~~l~rIa~kS------~~nLRrAl 226 (351)
T KOG2035|consen 189 EEITSVLSKV-----------LKKEG--LQLPKELLKRIAEKS------NRNLRRAL 226 (351)
T ss_pred HHHHHHHHHH-----------HHHhc--ccCcHHHHHHHHHHh------cccHHHHH
Confidence 9999988753 22234 447789999999872 24555554
No 219
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.72 E-value=1.6e-07 Score=94.46 Aligned_cols=173 Identities=22% Similarity=0.398 Sum_probs=110.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh---CC
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV---NV 351 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l---~~ 351 (606)
++|.|..|+.|.+.-.+ + ..+. +-.||||+|--|||||++.|++..++ +.
T Consensus 62 l~Gvd~qk~~L~~NT~~----F-~~G~----------------------pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl 114 (287)
T COG2607 62 LVGVDRQKEALVRNTEQ----F-AEGL----------------------PANNVLLWGARGTGKSSLVKALLNEYADEGL 114 (287)
T ss_pred HhCchHHHHHHHHHHHH----H-HcCC----------------------cccceEEecCCCCChHHHHHHHHHHHHhcCC
Confidence 79999999998665532 1 1222 12899999999999999999999887 46
Q ss_pred ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhce
Q 007362 352 PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (606)
Q Consensus 352 ~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~ 431 (606)
.+++++-.++..- ..++ +.+...+ ++=|||+|+.- +-. ++.....|-.+|||.
T Consensus 115 rLVEV~k~dl~~L-------p~l~-~~Lr~~~------~kFIlFcDDLS-Fe~------------gd~~yK~LKs~LeG~ 167 (287)
T COG2607 115 RLVEVDKEDLATL-------PDLV-ELLRARP------EKFILFCDDLS-FEE------------GDDAYKALKSALEGG 167 (287)
T ss_pred eEEEEcHHHHhhH-------HHHH-HHHhcCC------ceEEEEecCCC-CCC------------CchHHHHHHHHhcCC
Confidence 7888888776531 2222 2222222 44599999865 221 123677788889975
Q ss_pred eeecCCCCcccCCCCCcEEEecCceeeeccCCCcCh-HHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcch
Q 007362 432 IVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDL-EKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESS 510 (606)
Q Consensus 432 ~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l-~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 510 (606)
+.- ...|++|..|+|-..| .+...++. ++. ..+++.
T Consensus 168 ve~-----------------rP~NVl~YATSNRRHLl~e~~~dn~-----~~~---------------------~eih~~ 204 (287)
T COG2607 168 VEG-----------------RPANVLFYATSNRRHLLPEDMKDNE-----GST---------------------GEIHPS 204 (287)
T ss_pred ccc-----------------CCCeEEEEEecCCcccccHhhhhCC-----Ccc---------------------cccChh
Confidence 532 3456777777775432 11111111 111 122223
Q ss_pred hhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhh
Q 007362 511 DLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEP 546 (606)
Q Consensus 511 ~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~ 546 (606)
+.+.+.+ .|-+||...+.|.+.+.++..+|+..+
T Consensus 205 eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 205 EAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred HHHHHhh--chhhhcceeecccCCCHHHHHHHHHHH
Confidence 3333333 467899999999999999999998864
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.71 E-value=6.5e-08 Score=86.06 Aligned_cols=76 Identities=29% Similarity=0.421 Sum_probs=51.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc---eeecchhhhhhc------------CCcccchHHHHHHHHHhhhhhhhhcC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP---FVIADATTLTQA------------GYVGEDVESILYKLLAQAEFNVEAAQ 390 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~---fi~i~~s~l~~s------------g~vG~~~~~~l~~lf~~a~~~l~~a~ 390 (606)
.+++|+||||||||++++.+|..+... ++.+++...... ..........+..++..+... .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL----K 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc----C
Confidence 689999999999999999999999764 777777643321 011111123333444444332 3
Q ss_pred CCEEEEcccchhhhh
Q 007362 391 QGMVYIDEVDKITKK 405 (606)
Q Consensus 391 ~~ILfIDEiD~l~~~ 405 (606)
..+|||||++++...
T Consensus 79 ~~viiiDei~~~~~~ 93 (148)
T smart00382 79 PDVLILDEITSLLDA 93 (148)
T ss_pred CCEEEEECCcccCCH
Confidence 589999999998776
No 221
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.70 E-value=3.5e-07 Score=94.34 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=40.9
Q ss_pred hccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHcc
Q 007362 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKA 579 (606)
Q Consensus 514 ~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a 579 (606)
..+++-.|++|+ .+|.-.|++++|+.+|++-. +...++.++++|++.|..-+
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iR-------------c~EEdv~m~~~A~d~Lt~i~ 390 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIR-------------CQEEDVEMNPDALDLLTKIG 390 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhh-------------hhhhccccCHHHHHHHHHhh
Confidence 345777899998 68889999999999998732 33445679999999998763
No 222
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.4e-07 Score=100.79 Aligned_cols=91 Identities=25% Similarity=0.274 Sum_probs=57.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCcee---ecchhh------hhhc---CC--c-----------------------
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV---IADATT------LTQA---GY--V----------------------- 367 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi---~i~~s~------l~~s---g~--v----------------------- 367 (606)
+..+||+||+|+||+++|+.+|+.+.+..- ...|.. +... ++ +
T Consensus 21 ~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~ 100 (342)
T PRK06964 21 PHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADE 100 (342)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhc
Confidence 378999999999999999999999865321 001110 0000 00 0
Q ss_pred -c---------cchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 368 -G---------EDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 368 -G---------~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
| .. -..++.+.+........+...|+|||++|+++.. ..|+||+.||+
T Consensus 101 ~~~k~~~~~~~I~-idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 158 (342)
T PRK06964 101 GGKKTKAPSKEIK-IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA--------------AANALLKTLEE 158 (342)
T ss_pred ccccccccccccC-HHHHHHHHHHhccCCccCCceEEEEechhhcCHH--------------HHHHHHHHhcC
Confidence 0 01 1234444443332223345679999999999988 99999999995
No 223
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.66 E-value=3.7e-08 Score=101.12 Aligned_cols=87 Identities=30% Similarity=0.492 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH------hCCceeecchhhhhhcCCcccchHHHHHHHHHh-----------hhhhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH------VNVPFVIADATTLTQAGYVGEDVESILYKLLAQ-----------AEFNVE 387 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~------l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~-----------a~~~l~ 387 (606)
...+||.||+|.||++||+.|-+. +..+|++++|..+... . .+..+|.. ..+.+.
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd-----~---amsalfghvkgaftga~~~r~gllr 279 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGD-----T---AMSALFGHVKGAFTGARESREGLLR 279 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCc-----h---HHHHHHhhhccccccchhhhhhhhc
Confidence 478999999999999999988753 4679999999887632 1 12233332 234456
Q ss_pred hcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceee
Q 007362 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (606)
Q Consensus 388 ~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~ 433 (606)
.+.++.||+|||..+..+ -|..||+.+|++.+
T Consensus 280 sadggmlfldeigelgad--------------eqamllkaieekrf 311 (531)
T COG4650 280 SADGGMLFLDEIGELGAD--------------EQAMLLKAIEEKRF 311 (531)
T ss_pred cCCCceEehHhhhhcCcc--------------HHHHHHHHHHhhcc
Confidence 688999999999998877 89999999996443
No 224
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.60 E-value=2.4e-07 Score=96.48 Aligned_cols=91 Identities=27% Similarity=0.367 Sum_probs=58.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh-hhhhcCCcccchHHHHHHHHHhhhh--hhhh-cCCCEEEEcccch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT-TLTQAGYVGEDVESILYKLLAQAEF--NVEA-AQQGMVYIDEVDK 401 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s-~l~~sg~vG~~~~~~l~~lf~~a~~--~l~~-a~~~ILfIDEiD~ 401 (606)
.|+|||||||||||+...+.|+.+..+.-.-++. ++..+.-.|.++.+.--+.|..... .+.. +....|+|||+|.
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADa 142 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADA 142 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhH
Confidence 5999999999999999999999986642222211 1222222333332222244443331 1111 2457999999999
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
++.. +|++|.+..+.
T Consensus 143 MT~~--------------AQnALRRviek 157 (360)
T KOG0990|consen 143 MTRD--------------AQNALRRVIEK 157 (360)
T ss_pred hhHH--------------HHHHHHHHHHH
Confidence 9988 99999998773
No 225
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=5.2e-07 Score=95.65 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=56.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee-cchh------hhhh---cCC--c-----ccc-hHHHHHHHHHhhhhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI-ADAT------TLTQ---AGY--V-----GED-VESILYKLLAQAEFNVE 387 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~-i~~s------~l~~---sg~--v-----G~~-~~~~l~~lf~~a~~~l~ 387 (606)
..+||.||.|+||+++|+.+|+.+.+.-.. ..|. .+.. .++ + |.. ....++.+.+.......
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~ 105 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQ 105 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCcc
Confidence 679999999999999999999988431100 0010 0000 000 0 111 01234444333322222
Q ss_pred hcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 388 ~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+...|++||++|+++.. ..|+||+.||+
T Consensus 106 ~~~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 134 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES--------------ASNALLKTLEE 134 (319)
T ss_pred cCCceEEEecchhhhCHH--------------HHHHHHHHhcC
Confidence 345679999999999988 99999999995
No 226
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=4.6e-07 Score=96.78 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=57.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc--eeecchhh------h-----------hhc---CCcccchHHHHHHHHHhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP--FVIADATT------L-----------TQA---GYVGEDVESILYKLLAQAE 383 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~--fi~i~~s~------l-----------~~s---g~vG~~~~~~l~~lf~~a~ 383 (606)
..+||+||+|+||+++|.++|+.+.+. --...|.. + ... ..++ -..++.+.+...
T Consensus 25 HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~---idqiR~l~~~~~ 101 (334)
T PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLG---VDAVREVTEKLY 101 (334)
T ss_pred eEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCC---HHHHHHHHHHHh
Confidence 678999999999999999999988431 10001110 0 000 0111 123444444333
Q ss_pred hhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 384 FNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 384 ~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
..-..+...|+|||++|+|+.. ..|+||+.||+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~--------------AaNaLLKtLEE 134 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDA--------------AANALLKTLEE 134 (334)
T ss_pred hccccCCceEEEEcchHhhCHH--------------HHHHHHHHhcC
Confidence 2223346679999999999988 99999999995
No 227
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=6.4e-07 Score=101.77 Aligned_cols=148 Identities=19% Similarity=0.328 Sum_probs=104.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
..+||+|+||||||++.+++|++++.+++.++|.++... -.+. .+..+...|.++... .++||||-.+|-+.-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~~-~etkl~~~f~~a~~~----~pavifl~~~dvl~id 505 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SASH-TETKLQAIFSRARRC----SPAVLFLRNLDVLGID 505 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccch-hHHHHHHHHHHHhhc----CceEEEEeccceeeec
Confidence 679999999999999999999999999999999998854 2233 366677788777654 8899999999977643
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAP 485 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~ 485 (606)
... +.+ .+++..+-..|.... +..+....+||++.+..
T Consensus 506 ~dg---ged---~rl~~~i~~~ls~e~----------------~~~~~~~~ivv~t~~s~-------------------- 543 (953)
T KOG0736|consen 506 QDG---GED---ARLLKVIRHLLSNED----------------FKFSCPPVIVVATTSSI-------------------- 543 (953)
T ss_pred CCC---chh---HHHHHHHHHHHhccc----------------ccCCCCceEEEEecccc--------------------
Confidence 221 111 235555555554111 12234456677665421
Q ss_pred cccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHH
Q 007362 486 VRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNAL 550 (606)
Q Consensus 486 ~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L 550 (606)
+.+++.+.+-|-..|.++.++++|..+|++-+++.+
T Consensus 544 -----------------------------~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~ 579 (953)
T KOG0736|consen 544 -----------------------------EDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHL 579 (953)
T ss_pred -----------------------------ccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcc
Confidence 125666677777788999999999999988776543
No 228
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=9.8e-07 Score=93.92 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=58.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc-------------------------eeecchhhh-hhcCC--cccchHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP-------------------------FVIADATTL-TQAGY--VGEDVESILYK 377 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~-------------------------fi~i~~s~l-~~sg~--vG~~~~~~l~~ 377 (606)
..+||+||+|+|||++|+.+|+.+.+. |+.++...- .+.+. .... -..++.
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~-id~iR~ 100 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK-IDAVRE 100 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC-HHHHHH
Confidence 569999999999999999999988531 222221100 00000 0011 234555
Q ss_pred HHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 378 LLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 378 lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
+.+........+...|++||+++.+... .++.|++.||.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~--------------a~naLLk~LEe 139 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQ--------------AANSLLKVLEE 139 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHH--------------HHHHHHHHHHh
Confidence 5544433333356789999999999988 99999999984
No 229
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.50 E-value=3.7e-06 Score=87.92 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=65.6
Q ss_pred hHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHH
Q 007362 264 PKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAK 343 (606)
Q Consensus 264 ~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAr 343 (606)
.+.|.....+.-||...|++.|...-. -+..+... ...++||+|+++.|||++++
T Consensus 25 ~eRI~~i~~~rWIgY~~A~~~L~~L~~----Ll~~P~~~---------------------Rmp~lLivG~snnGKT~Ii~ 79 (302)
T PF05621_consen 25 EERIAYIRADRWIGYPRAKEALDRLEE----LLEYPKRH---------------------RMPNLLIVGDSNNGKTMIIE 79 (302)
T ss_pred HHHHHHHhcCCeecCHHHHHHHHHHHH----HHhCCccc---------------------CCCceEEecCCCCcHHHHHH
Confidence 334555556678999999988865442 01111111 13789999999999999999
Q ss_pred HHHHHhC---------Cceeecchhh----------hhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhh
Q 007362 344 TLARHVN---------VPFVIADATT----------LTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 344 alA~~l~---------~~fi~i~~s~----------l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~ 404 (606)
.+.+... .|++.+.+-. +...-++.......+.++.......+..-...+|+|||+|.+..
T Consensus 80 rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 80 RFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred HHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 9997652 3555555431 11110111100111112222222223334567999999998755
Q ss_pred h
Q 007362 405 K 405 (606)
Q Consensus 405 ~ 405 (606)
.
T Consensus 160 G 160 (302)
T PF05621_consen 160 G 160 (302)
T ss_pred c
Confidence 4
No 230
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.44 E-value=2.6e-06 Score=92.57 Aligned_cols=172 Identities=17% Similarity=0.302 Sum_probs=106.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-----CCceeecchhhhhhcCCcccchHHHHHHHHH----hhhhhhhhcCCCEEEE
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-----NVPFVIADATTLTQAGYVGEDVESILYKLLA----QAEFNVEAAQQGMVYI 396 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-----~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~----~a~~~l~~a~~~ILfI 396 (606)
..++|||++|.|||.|++++++.. +..++++....+.. ..+..+.+ ..+... .--+++|
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~---------~~v~a~~~~~~~~Fk~~y---~~dlllI 181 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN---------DFVKALRDNEMEKFKEKY---SLDLLLI 181 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH---------HHHHHHHhhhHHHHHHhh---ccCeeee
Confidence 679999999999999999999877 23566677665541 11111111 111111 2249999
Q ss_pred cccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhc
Q 007362 397 DEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQ 476 (606)
Q Consensus 397 DEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~ 476 (606)
|+|+.+..+. ..|..|...+..- . -..+.+ |+|+...
T Consensus 182 DDiq~l~gk~------------~~qeefFh~FN~l----~--------------~~~kqI--vltsdr~----------- 218 (408)
T COG0593 182 DDIQFLAGKE------------RTQEEFFHTFNAL----L--------------ENGKQI--VLTSDRP----------- 218 (408)
T ss_pred chHhHhcCCh------------hHHHHHHHHHHHH----H--------------hcCCEE--EEEcCCC-----------
Confidence 9999876652 1455555554410 0 011112 2222110
Q ss_pred ccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe--EEEcCCcCHHHHHHHHhhhHHHHHHHH
Q 007362 477 DSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI--LVSLTALTEDQLVKVLTEPKNALGKQY 554 (606)
Q Consensus 477 ~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~--iI~f~~Ls~eel~~Il~~~l~~L~k~~ 554 (606)
|.. =..+.|.|.+||.- ++.+.+++.+....|+.+.
T Consensus 219 --------P~~--------------------------l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk-------- 256 (408)
T COG0593 219 --------PKE--------------------------LNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK-------- 256 (408)
T ss_pred --------chh--------------------------hccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH--------
Confidence 000 00144667777766 7889999999999998751
Q ss_pred HHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHH
Q 007362 555 KRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMY 602 (606)
Q Consensus 555 ~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~ 602 (606)
+ ....+.++++++.+|+.. +..+ .|+|.-++.++...++.
T Consensus 257 ---a--~~~~~~i~~ev~~~la~~-~~~n--vReLegaL~~l~~~a~~ 296 (408)
T COG0593 257 ---A--EDRGIEIPDEVLEFLAKR-LDRN--VRELEGALNRLDAFALF 296 (408)
T ss_pred ---H--HhcCCCCCHHHHHHHHHH-hhcc--HHHHHHHHHHHHHHHHh
Confidence 1 123466999999999987 3444 48999999888777664
No 231
>PRK12377 putative replication protein; Provisional
Probab=98.43 E-value=6.2e-07 Score=91.94 Aligned_cols=85 Identities=16% Similarity=0.318 Sum_probs=54.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhc---CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~s---g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
.+++|+||||||||+||.+|++.+ +..++.++..++... .+... .....+++.. ....+|+|||+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~---~~~~~~l~~l------~~~dLLiIDDl 172 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNG---QSGEKFLQEL------CKVDLLVLDEI 172 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhcc---chHHHHHHHh------cCCCEEEEcCC
Confidence 679999999999999999999988 456666766665531 01000 0001111111 24579999999
Q ss_pred chhhhhhhccccccCcchhHHHHHHHHHHhce
Q 007362 400 DKITKKAESLNISRDVSGEGVQQALLKMLEGT 431 (606)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~ 431 (606)
...... +..+..|.++++.+
T Consensus 173 g~~~~s------------~~~~~~l~~ii~~R 192 (248)
T PRK12377 173 GIQRET------------KNEQVVLNQIIDRR 192 (248)
T ss_pred CCCCCC------------HHHHHHHHHHHHHH
Confidence 653221 11677888888853
No 232
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=6.6e-06 Score=90.45 Aligned_cols=92 Identities=30% Similarity=0.432 Sum_probs=62.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchH---HHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVE---SILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~---~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
..+||.||||+|||.||-.+|...+.||+.+-..+- .+|.++. ..+.+.|+.+-.. .-+||++|+|++|
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~----miG~sEsaKc~~i~k~F~DAYkS----~lsiivvDdiErL 610 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED----MIGLSESAKCAHIKKIFEDAYKS----PLSIIVVDDIERL 610 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH----ccCccHHHHHHHHHHHHHHhhcC----cceEEEEcchhhh
Confidence 789999999999999999999999999997544332 3444433 2345566655432 5689999999998
Q ss_pred hhhhhccccccCcchhHHHHHHHHHHh
Q 007362 403 TKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 403 ~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
..- ..++...|. -++++|+-+|.
T Consensus 611 iD~---vpIGPRfSN-~vlQaL~VllK 633 (744)
T KOG0741|consen 611 LDY---VPIGPRFSN-LVLQALLVLLK 633 (744)
T ss_pred hcc---cccCchhhH-HHHHHHHHHhc
Confidence 543 334443332 25666666654
No 233
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=3.6e-06 Score=91.58 Aligned_cols=207 Identities=20% Similarity=0.295 Sum_probs=120.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC----
Q 007362 275 VIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN---- 350 (606)
Q Consensus 275 VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~---- 350 (606)
++|.+.-+..+.+.+..|.- ... ...+.+.|-||||||.+..-+-..+.
T Consensus 152 l~gRe~e~~~v~~F~~~hle------~~t---------------------~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~ 204 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHLE------LNT---------------------SGSLYVSGQPGTGKTALLSRVLDSLSKSSK 204 (529)
T ss_pred ccchHHHHHHHHHHHHhhhh------ccc---------------------CcceEeeCCCCcchHHHHHHHHHhhhhhcc
Confidence 78888888888888865521 111 27899999999999999886554442
Q ss_pred C-ceeecchhhhhhc-------------CCcccchHHHHHHHHHhhhhhhh-hcCCCEEEEcccchhhhhhhccccccCc
Q 007362 351 V-PFVIADATTLTQA-------------GYVGEDVESILYKLLAQAEFNVE-AAQQGMVYIDEVDKITKKAESLNISRDV 415 (606)
Q Consensus 351 ~-~fi~i~~s~l~~s-------------g~vG~~~~~~l~~lf~~a~~~l~-~a~~~ILfIDEiD~l~~~r~~~~~~~~~ 415 (606)
. ..++++|..+... +.++...+......|. .++. ....-+|++||+|.|...
T Consensus 205 ~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~---~h~~q~k~~~llVlDEmD~L~tr---------- 271 (529)
T KOG2227|consen 205 SPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFE---KHTKQSKFMLLLVLDEMDHLITR---------- 271 (529)
T ss_pred cceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHH---HHHhcccceEEEEechhhHHhhc----------
Confidence 2 3477888865532 1111111111111111 1111 123569999999999855
Q ss_pred chhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhcccCCCcCcccccccccccc
Q 007362 416 SGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRAGVT 495 (606)
Q Consensus 416 s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~ 495 (606)
-+..|+.+++ ++ ...++.+++|.-+|..||.+-
T Consensus 272 ----~~~vLy~lFe-----wp-------------~lp~sr~iLiGiANslDlTdR------------------------- 304 (529)
T KOG2227|consen 272 ----SQTVLYTLFE-----WP-------------KLPNSRIILIGIANSLDLTDR------------------------- 304 (529)
T ss_pred ----ccceeeeehh-----cc-------------cCCcceeeeeeehhhhhHHHH-------------------------
Confidence 3444555544 11 124555666655554444222
Q ss_pred hhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHH
Q 007362 496 DAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVI 575 (606)
Q Consensus 496 ~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~L 575 (606)
++-++.. ...+. +.++.|.||+.+++.+|+...+... . ...+-..+++.+
T Consensus 305 -------~LprL~~----~~~~~-------P~~l~F~PYTk~qI~~Il~~rl~~~-----------~-t~~~~~~Aie~~ 354 (529)
T KOG2227|consen 305 -------FLPRLNL----DLTIK-------PKLLVFPPYTKDQIVEILQQRLSEE-----------S-TSIFLNAAIELC 354 (529)
T ss_pred -------Hhhhhhh----ccCCC-------CceeeecCCCHHHHHHHHHHHHhcc-----------c-ccccchHHHHHH
Confidence 1111110 00122 3589999999999999998642222 1 222444789999
Q ss_pred HHccCCCCCChHHHHHHHHHHHH
Q 007362 576 AKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 576 a~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
|++.....-+.|.+-.++.+.++
T Consensus 355 ArKvaa~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 355 ARKVAAPSGDLRKALDVCRRAIE 377 (529)
T ss_pred HHHhccCchhHHHHHHHHHHHHH
Confidence 98866665557877777775554
No 234
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.38 E-value=2.8e-07 Score=102.32 Aligned_cols=138 Identities=19% Similarity=0.326 Sum_probs=81.3
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHH
Q 007362 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 267 l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA 346 (606)
+...+.-.|.|++.+|.+|..++... ..+-.+.. ..+ .-..||||.|.|||||+.+.|.++
T Consensus 443 IiaSiaPsIyGh~~VK~AvAlaLfGG--------v~kn~~~k----------hkv-RGDinvLL~GDPGTaKSQFLKY~e 503 (854)
T KOG0477|consen 443 IIASIAPSIYGHEDVKRAVALALFGG--------VPKNPGGK----------HKV-RGDINVLLLGDPGTAKSQFLKYAE 503 (854)
T ss_pred HHHhhCchhhchHHHHHHHHHHHhcC--------CccCCCCC----------cee-ccceeEEEecCCCccHHHHHHHHH
Confidence 34444455899999999998888521 11111100 011 113799999999999999999999
Q ss_pred HHhCCceeecc-hhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHH
Q 007362 347 RHVNVPFVIAD-ATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (606)
Q Consensus 347 ~~l~~~fi~i~-~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL 425 (606)
+.....++..- ++.- .|+..+-...-+..-.....+.+..|.++|.+|||+|++... -...+-
T Consensus 504 K~s~RAV~tTGqGASa--vGLTa~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndq--------------DRtSIH 567 (854)
T KOG0477|consen 504 KTSPRAVFTTGQGASA--VGLTAYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQ--------------DRTSIH 567 (854)
T ss_pred hcCcceeEeccCCccc--cceeEEEeeCCccceeeeccCeEEEccCceEEeehhhhhccc--------------ccchHH
Confidence 88765554321 1110 111100000000000011122345678899999999999776 344577
Q ss_pred HHHhceeeecCCCC
Q 007362 426 KMLEGTIVNVPEKG 439 (606)
Q Consensus 426 ~~Leg~~~~i~~~g 439 (606)
+.||...++|++.|
T Consensus 568 EAMEQQSISISKAG 581 (854)
T KOG0477|consen 568 EAMEQQSISISKAG 581 (854)
T ss_pred HHHHhcchhhhhhh
Confidence 88887777777665
No 235
>PF13173 AAA_14: AAA domain
Probab=98.35 E-value=2.3e-06 Score=78.46 Aligned_cols=70 Identities=23% Similarity=0.381 Sum_probs=45.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC--CceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN--VPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~--~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~ 403 (606)
..++|+||.|+||||+++.+++.+. ..++.+++.+....... . .. +.+.+.+.. .....+||||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~~----~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLELI----KPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHhh----ccCCcEEEEehhhhhc
Confidence 5699999999999999999998875 66777777654421100 0 00 112221111 1156899999999873
No 236
>PRK08116 hypothetical protein; Validated
Probab=98.35 E-value=3.5e-06 Score=87.35 Aligned_cols=86 Identities=19% Similarity=0.385 Sum_probs=53.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhc---CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~s---g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
.+++|+|++|||||+||.++++.+ +.+++.++..++... .|.... ......+++.. ....+|+|||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~l------~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRSL------VNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHHh------cCCCEEEEecc
Confidence 469999999999999999999987 677888887765521 011100 00011111111 13469999999
Q ss_pred chhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 400 DKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
...... +..+..|..+++.
T Consensus 188 g~e~~t------------~~~~~~l~~iin~ 206 (268)
T PRK08116 188 GAERDT------------EWAREKVYNIIDS 206 (268)
T ss_pred cCCCCC------------HHHHHHHHHHHHH
Confidence 632111 1267788888874
No 237
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.32 E-value=6.7e-06 Score=83.51 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=50.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
..-.+.||+|||||++.|.+|+.+|..++..+|++..+ ...+..++.-... .++-+.|||++++..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~~~-----~GaW~cfdefnrl~~~ 99 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGLAQ-----SGAWLCFDEFNRLSEE 99 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHHHH-----HT-EEEEETCCCSSHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHHhh-----cCchhhhhhhhhhhHH
Confidence 56789999999999999999999999999999987552 2344444433221 4689999999999877
No 238
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.30 E-value=1.2e-06 Score=79.35 Aligned_cols=86 Identities=23% Similarity=0.414 Sum_probs=50.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh--------CCceeecchhhhhhc-----------CCc--c-cchHHHHHHHHHhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV--------NVPFVIADATTLTQA-----------GYV--G-EDVESILYKLLAQAE 383 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l--------~~~fi~i~~s~l~~s-----------g~v--G-~~~~~~l~~lf~~a~ 383 (606)
..++++||+|+|||++++.+++.+ ..+++.+++...... +.. . .........+.+.
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~-- 82 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA-- 82 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH--
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH--
Confidence 689999999999999999999987 566666666543210 110 0 1111112111111
Q ss_pred hhhhhcCCCEEEEcccchh-hhhhhccccccCcchhHHHHHHHHHHh
Q 007362 384 FNVEAAQQGMVYIDEVDKI-TKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 384 ~~l~~a~~~ILfIDEiD~l-~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+......+|+|||+|.+ ... +.+.|..+++
T Consensus 83 --l~~~~~~~lviDe~~~l~~~~--------------~l~~l~~l~~ 113 (131)
T PF13401_consen 83 --LDRRRVVLLVIDEADHLFSDE--------------FLEFLRSLLN 113 (131)
T ss_dssp --HHHCTEEEEEEETTHHHHTHH--------------HHHHHHHHTC
T ss_pred --HHhcCCeEEEEeChHhcCCHH--------------HHHHHHHHHh
Confidence 12222359999999998 433 7888877765
No 239
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.29 E-value=6e-06 Score=75.98 Aligned_cols=64 Identities=25% Similarity=0.336 Sum_probs=51.7
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
.....++..|.+.|.||+-|++.|..+|..++.. ..- ..+..+.|+|+||||||++
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~---~~p---------------------~KpLVlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN---PNP---------------------RKPLVLSFHGWTGTGKNFV 69 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC---CCC---------------------CCCEEEEeecCCCCcHHHH
Confidence 4677899999999999999999999999755321 100 1136677999999999999
Q ss_pred HHHHHHHh
Q 007362 342 AKTLARHV 349 (606)
Q Consensus 342 AralA~~l 349 (606)
++.||+.+
T Consensus 70 ~~liA~~l 77 (127)
T PF06309_consen 70 SRLIAEHL 77 (127)
T ss_pred HHHHHHHH
Confidence 99999986
No 240
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.26 E-value=9.8e-06 Score=79.82 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=25.5
Q ss_pred cccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHc
Q 007362 518 IPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKK 578 (606)
Q Consensus 518 ~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~ 578 (606)
..++.+|+.. +.+.+++.++..+++... +... .++.++++.++.+...
T Consensus 176 ~~~~~~~~~~-~~l~~l~~~e~~~~~~~~-----------~~~~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 176 KSPLFGRFSH-IELKPLSKEEAREFLKEL-----------FKEL-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp TSTTTT---E-EEE----HHHHHHHHHHH-----------HHCC-------HHHHHHHHHH
T ss_pred cCccccccce-EEEeeCCHHHHHHHHHHH-----------HHHh-hcccCCHHHHHHHHHH
Confidence 4568889887 999999999988887753 1111 2224588888888876
No 241
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=98.25 E-value=1.7e-06 Score=73.38 Aligned_cols=66 Identities=26% Similarity=0.420 Sum_probs=56.7
Q ss_pred cCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHHHHHHh
Q 007362 534 LTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYE 603 (606)
Q Consensus 534 Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~~al~~ 603 (606)
|+.+++.+|+...+..+.+++. .+++++.++++++++|++.+|+.++|||.|+++|++.+.+.|.+
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~----~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~ 66 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLK----EKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLAD 66 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHH----HTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH----HCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999998777766653 37999999999999999999999999999999999999999875
No 242
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.22 E-value=1e-05 Score=91.68 Aligned_cols=180 Identities=22% Similarity=0.333 Sum_probs=108.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC----------Cceeecchhhhhhc---------CCcccchHHHHHHHHHhhhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN----------VPFVIADATTLTQA---------GYVGEDVESILYKLLAQAEFNV 386 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~----------~~fi~i~~s~l~~s---------g~vG~~~~~~l~~lf~~a~~~l 386 (606)
.-+.+.|-||||||.+++.+-+.|. ..|++|++..+.+. .+.|+..... ..++.....+
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~--~al~~L~~~f 500 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWD--AALEALNFRF 500 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHH--HHHHHHHHhh
Confidence 4799999999999999999888652 57888888766532 1222221110 0011111111
Q ss_pred ----hhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccC
Q 007362 387 ----EAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGG 462 (606)
Q Consensus 387 ----~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tg 462 (606)
.+...+||+|||.|.|... -|+.|..+++= + ......+++|+.+
T Consensus 501 ~~~k~~~~~~VvLiDElD~Lvtr--------------~QdVlYn~fdW-----p-------------t~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 501 TVPKPKRSTTVVLIDELDILVTR--------------SQDVLYNIFDW-----P-------------TLKNSKLVVIAIA 548 (767)
T ss_pred ccCCCCCCCEEEEeccHHHHhcc--------------cHHHHHHHhcC-----C-------------cCCCCceEEEEec
Confidence 2346689999999988765 56667777651 1 1123455666655
Q ss_pred CCcChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCe-EEEcCCcCHHHHHH
Q 007362 463 AFVDLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPI-LVSLTALTEDQLVK 541 (606)
Q Consensus 463 n~~~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~-iI~f~~Ls~eel~~ 541 (606)
|..|+-+ ..|.+-.-+|++. .+.|.+++.+++++
T Consensus 549 NTmdlPE---------------------------------------------r~l~nrvsSRlg~tRi~F~pYth~qLq~ 583 (767)
T KOG1514|consen 549 NTMDLPE---------------------------------------------RLLMNRVSSRLGLTRICFQPYTHEQLQE 583 (767)
T ss_pred ccccCHH---------------------------------------------HHhccchhhhccceeeecCCCCHHHHHH
Confidence 5544321 1234444566666 68999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 542 VLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 542 Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
|+...+..+ -.|+.++++.++++-..-.-.||.-..++.+..+
T Consensus 584 Ii~~RL~~~--------------~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 584 IISARLKGL--------------DAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred HHHHhhcch--------------hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 998654333 2256667777766544333446655555555443
No 243
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=1.2e-05 Score=84.08 Aligned_cols=90 Identities=22% Similarity=0.171 Sum_probs=57.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh---cCC-----cc----cchHHHHHHHHHhhhhhhhhcCCCE
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ---AGY-----VG----EDVESILYKLLAQAEFNVEAAQQGM 393 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~---sg~-----vG----~~~~~~l~~lf~~a~~~l~~a~~~I 393 (606)
..+||+||.|+||+++|..+|+.+.+.--.-.|..+.. .++ .+ .. -..++.+.......-..+...|
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~-idqiR~l~~~~~~~p~e~~~kv 98 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHS-IETPRAIKKQIWIHPYESPYKI 98 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCc-HHHHHHHHHHHhhCccCCCceE
Confidence 67899999999999999999998854211111111100 000 01 11 1234444443332222345679
Q ss_pred EEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
++||++|+++.+ .+|+||+.||+
T Consensus 99 ~ii~~ad~mt~~--------------AaNaLLK~LEE 121 (290)
T PRK05917 99 YIIHEADRMTLD--------------AISAFLKVLED 121 (290)
T ss_pred EEEechhhcCHH--------------HHHHHHHHhhc
Confidence 999999999988 99999999995
No 244
>PRK06526 transposase; Provisional
Probab=98.20 E-value=1.6e-06 Score=89.20 Aligned_cols=86 Identities=23% Similarity=0.324 Sum_probs=52.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
..+++|+||||||||+||.+|+..+ +..++.+++.++...-..... ...+...+.. .....+|+|||++.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-~~~~~~~l~~------l~~~dlLIIDD~g~ 170 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-AGRLQAELVK------LGRYPLLIVDEVGY 170 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-cCcHHHHHHH------hccCCEEEEccccc
Confidence 4789999999999999999999876 555555666554421000000 0011111111 12457999999997
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+.... ..++.|.++++
T Consensus 171 ~~~~~------------~~~~~L~~li~ 186 (254)
T PRK06526 171 IPFEP------------EAANLFFQLVS 186 (254)
T ss_pred CCCCH------------HHHHHHHHHHH
Confidence 65331 25667778776
No 245
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=1.3e-05 Score=83.87 Aligned_cols=89 Identities=18% Similarity=0.217 Sum_probs=54.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCcee--e------cchhhhhhc---C--Cc---ccc-hHHHHHHHHHhhhhhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV--I------ADATTLTQA---G--YV---GED-VESILYKLLAQAEFNVEA 388 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi--~------i~~s~l~~s---g--~v---G~~-~~~~l~~lf~~a~~~l~~ 388 (606)
..+||+|| +||+++|+.+|+.+.+.-- . -+|..+... + ++ |.. --..++.+.......-..
T Consensus 25 hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~ 102 (290)
T PRK07276 25 HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSGYE 102 (290)
T ss_pred eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCccc
Confidence 67899996 6899999999998843211 0 011111100 0 11 110 012344444433322223
Q ss_pred cCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 389 a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
+...|++||++|+++.. ..|+||+.||+
T Consensus 103 ~~~kV~II~~ad~m~~~--------------AaNaLLKtLEE 130 (290)
T PRK07276 103 GKQQVFIIKDADKMHVN--------------AANSLLKVIEE 130 (290)
T ss_pred CCcEEEEeehhhhcCHH--------------HHHHHHHHhcC
Confidence 45679999999999988 99999999995
No 246
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.19 E-value=9.3e-07 Score=96.42 Aligned_cols=137 Identities=21% Similarity=0.343 Sum_probs=85.0
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHH
Q 007362 265 KEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKT 344 (606)
Q Consensus 265 ~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAra 344 (606)
..+..++.-.|.|++++|+.|..++.-. ..+.+| ..|+ + .-..||+|.|.||+.|+.|.+.
T Consensus 334 ekLa~SiAPEIyGheDVKKaLLLlLVGg--------vd~~~~--dGMK--------I-RGdINicLmGDPGVAKSQLLky 394 (721)
T KOG0482|consen 334 EKLAASIAPEIYGHEDVKKALLLLLVGG--------VDKSPG--DGMK--------I-RGDINICLMGDPGVAKSQLLKY 394 (721)
T ss_pred HHHHHhhchhhccchHHHHHHHHHhhCC--------CCCCCC--CCce--------e-ecceeEEecCCCchhHHHHHHH
Confidence 3466667777999999999998877411 111000 0111 0 1137899999999999999999
Q ss_pred HHHHhCCceeecchhhhhhcCCcccchHHHHHHHHH----hhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHH
Q 007362 345 LARHVNVPFVIADATTLTQAGYVGEDVESILYKLLA----QAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGV 420 (606)
Q Consensus 345 lA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~----~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~v 420 (606)
+.+..-.-.+..--.. +| +|-. ....++-.. ...+.+..+.++|..|||+|++... -
T Consensus 395 i~rlapRgvYTTGrGS---SG-VGLT-AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~--------------D 455 (721)
T KOG0482|consen 395 ISRLAPRGVYTTGRGS---SG-VGLT-AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES--------------D 455 (721)
T ss_pred HHhcCcccceecCCCC---Cc-cccc-hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh--------------h
Confidence 9988743333211110 11 1211 111111000 0123345678899999999999877 5
Q ss_pred HHHHHHHHhceeeecCCCC
Q 007362 421 QQALLKMLEGTIVNVPEKG 439 (606)
Q Consensus 421 q~~LL~~Leg~~~~i~~~g 439 (606)
..++-+.||...++|.+.|
T Consensus 456 RtAIHEVMEQQTISIaKAG 474 (721)
T KOG0482|consen 456 RTAIHEVMEQQTISIAKAG 474 (721)
T ss_pred hHHHHHHHHhhhhhhhhhc
Confidence 6788899998888888776
No 247
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.19 E-value=4.8e-07 Score=98.68 Aligned_cols=139 Identities=21% Similarity=0.304 Sum_probs=81.6
Q ss_pred HHHhhhhhcCCHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHH
Q 007362 267 ICKGLDKFVIGQEKAKKVLSVAVYNHYK-RIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (606)
Q Consensus 267 l~~~L~~~VvGqe~ak~~L~~av~~~~~-rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAral 345 (606)
+.+.+.-.|.|.+++|+++.-++...-+ +|...-.. .-.-+|||.|.|||.|+.|.|.+
T Consensus 325 is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~l--------------------RGDINVLLLGDPgtAKSQlLKFv 384 (729)
T KOG0481|consen 325 ISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTL--------------------RGDINVLLLGDPGTAKSQLLKFV 384 (729)
T ss_pred HhhccCchhcCchhHHHHHHHHhhcCccccCCCccee--------------------ccceeEEEecCCchhHHHHHHHH
Confidence 5555666699999999999887752111 11111111 11379999999999999999988
Q ss_pred HHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHH
Q 007362 346 ARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALL 425 (606)
Q Consensus 346 A~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL 425 (606)
-+..-.-++. ++.--..+|+...-...-...-|-...+....+.++|+.|||+|++-.+ -.-++-
T Consensus 385 EkvsPIaVYT-SGKGSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~--------------DRVAIH 449 (729)
T KOG0481|consen 385 EKVSPIAVYT-SGKGSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED--------------DRVAIH 449 (729)
T ss_pred HhcCceEEEe-cCCCcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch--------------hhhHHH
Confidence 7765333321 1110000111000000000001111122344578999999999998766 566788
Q ss_pred HHHhceeeecCCCCc
Q 007362 426 KMLEGTIVNVPEKGA 440 (606)
Q Consensus 426 ~~Leg~~~~i~~~g~ 440 (606)
+.||...++|.+.|.
T Consensus 450 EAMEQQTISIAKAGI 464 (729)
T KOG0481|consen 450 EAMEQQTISIAKAGI 464 (729)
T ss_pred HHHHhhhHHHhhhcc
Confidence 899987788877764
No 248
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.17 E-value=3.6e-06 Score=100.97 Aligned_cols=156 Identities=22% Similarity=0.274 Sum_probs=103.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhc-CCcccch----HHHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGEDV----ESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~s-g~vG~~~----~~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
.+++||.|.||+|||+|..+||+..|..+++|+.++-++- +++|.+. .+. -.+..++..-+...++-|+|||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Ge--f~w~dapfL~amr~G~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGE--FRWMDAPFLHAMRDGGWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCce--eEecccHHHHHhhcCCEEEeehh
Confidence 3789999999999999999999999999999998742211 1222221 111 12233444444457889999999
Q ss_pred chhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhhhccc
Q 007362 400 DKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISERRQDS 478 (606)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~~~~~ 478 (606)
.-.+.+ ++.-|-..|| .+...||+-...+.....+.++ .+-|..+ +
T Consensus 1621 NLaSQS--------------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVF--------AaqNPq~------q----- 1667 (4600)
T COG5271 1621 NLASQS--------------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVF--------AAQNPQD------Q----- 1667 (4600)
T ss_pred hhhHHH--------------HHHHHHHHHhhccccccccccceeeccCCeeee--------eecCchh------c-----
Confidence 976655 8899999998 5555566654433333322222 2333210 0
Q ss_pred CCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHH
Q 007362 479 SIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (606)
Q Consensus 479 ~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~ 548 (606)
.--+.+++..|++|| .+|.+..|+.+|+..|+.....
T Consensus 1668 --------------------------------ggGRKgLPkSF~nRF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1668 --------------------------------GGGRKGLPKSFLNRF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred --------------------------------CCCcccCCHHHhhhh-heEEecccccchHHHHHHhhCC
Confidence 001345888999999 4788899999999999876544
No 249
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.15 E-value=1.3e-05 Score=96.54 Aligned_cols=162 Identities=25% Similarity=0.337 Sum_probs=106.5
Q ss_pred hhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhc-CCccc----chHHHHHHHHHhhhhhh-h
Q 007362 314 AVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVGE----DVESILYKLLAQAEFNV-E 387 (606)
Q Consensus 314 ~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~s-g~vG~----~~~~~l~~lf~~a~~~l-~ 387 (606)
++...+........+||.||+-+|||++.+.+|++.+..|++|+-.+-++. .|+|. +.+.+ -|.+.. .+ +
T Consensus 877 ~ln~~Ra~s~~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~l---sFkEGv-LVeA 952 (4600)
T COG5271 877 YLNTMRAASLSNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSL---SFKEGV-LVEA 952 (4600)
T ss_pred HHHHHHHHhhcCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCce---eeehhH-HHHH
Confidence 333444444556889999999999999999999999999999987643321 23332 11110 000000 00 1
Q ss_pred hcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcC
Q 007362 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVD 466 (606)
Q Consensus 388 ~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~ 466 (606)
..++--|+|||..-.+.+ ++.+|-++|| .+.+.||+.-.-......+..+.|.|...+-+|.
T Consensus 953 lR~GyWIVLDELNLApTD--------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGR--- 1015 (4600)
T COG5271 953 LRRGYWIVLDELNLAPTD--------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGR--- 1015 (4600)
T ss_pred HhcCcEEEeeccccCcHH--------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccch---
Confidence 125679999999966555 9999999998 7778888775444444444444444443333222
Q ss_pred hHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhh
Q 007362 467 LEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTE 545 (606)
Q Consensus 467 l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~ 545 (606)
.++..+|.+|| .-++|....+++++.|+..
T Consensus 1016 ------------------------------------------------K~LSrAFRNRF-lE~hFddipedEle~ILh~ 1045 (4600)
T COG5271 1016 ------------------------------------------------KGLSRAFRNRF-LEMHFDDIPEDELEEILHG 1045 (4600)
T ss_pred ------------------------------------------------HHHHHHHHhhh-HhhhcccCcHHHHHHHHhc
Confidence 23666788888 4678999999999999876
No 250
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=2.8e-05 Score=81.90 Aligned_cols=88 Identities=17% Similarity=0.201 Sum_probs=56.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCce---e-----ecchhhhhhcCCcccch-HHHHHHHHHhhhhhh-hhcCCCEEE
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF---V-----IADATTLTQAGYVGEDV-ESILYKLLAQAEFNV-EAAQQGMVY 395 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~f---i-----~i~~s~l~~sg~vG~~~-~~~l~~lf~~a~~~l-~~a~~~ILf 395 (606)
..+||+|+.|+||+++|+.+++.+.+.. + ..+...+. ..|... ...++.+.+...... ..+...|++
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d---~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD---IFDKDLSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec---cCCCcCCHHHHHHHHHHhccCCcccCCceEEE
Confidence 5688999999999999999999883311 0 00000010 001110 133445555443322 224678999
Q ss_pred EcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 396 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 396 IDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
||++|+++.. .+++||+.||.
T Consensus 96 I~~~e~m~~~--------------a~NaLLK~LEE 116 (299)
T PRK07132 96 IKNIEKTSNS--------------LLNALLKTIEE 116 (299)
T ss_pred EecccccCHH--------------HHHHHHHHhhC
Confidence 9999999877 99999999995
No 251
>PRK08181 transposase; Validated
Probab=98.08 E-value=5.3e-06 Score=86.08 Aligned_cols=88 Identities=24% Similarity=0.396 Sum_probs=55.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
...+++|+||||||||.||.++++.+ +..++.+++.++...-..... .....+.+... ....+|+|||++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~-~~~~~~~l~~l------~~~dLLIIDDlg 177 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR-ELQLESAIAKL------DKFDLLILDDLA 177 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHh-CCcHHHHHHHH------hcCCEEEEeccc
Confidence 34789999999999999999999865 566777777766532000000 00111111111 245699999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+... +..+..|+++++.
T Consensus 178 ~~~~~------------~~~~~~Lf~lin~ 195 (269)
T PRK08181 178 YVTKD------------QAETSVLFELISA 195 (269)
T ss_pred cccCC------------HHHHHHHHHHHHH
Confidence 76543 1256778888873
No 252
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.08 E-value=2.5e-05 Score=80.00 Aligned_cols=86 Identities=17% Similarity=0.299 Sum_probs=53.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCccc--chHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~--~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
.+++|+|+||||||+|+.+||+.+ +..++.++..++... +... ........+++.. ....+|+|||++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~-l~~~~~~~~~~~~~~l~~l------~~~dlLvIDDig 172 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA-MKDTFSNSETSEEQLLNDL------SNVDLLVIDEIG 172 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH-HHHHHhhccccHHHHHHHh------ccCCEEEEeCCC
Confidence 579999999999999999999988 567777777766531 1000 0000011122111 245699999998
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
..... +-....|.++++.
T Consensus 173 ~~~~s------------~~~~~~l~~Ii~~ 190 (244)
T PRK07952 173 VQTES------------RYEKVIINQIVDR 190 (244)
T ss_pred CCCCC------------HHHHHHHHHHHHH
Confidence 75322 1144567777764
No 253
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.05 E-value=8.3e-05 Score=82.73 Aligned_cols=129 Identities=22% Similarity=0.348 Sum_probs=79.0
Q ss_pred HHhhhhhcCCHHHHHHHHHHHHHHHHHH-HHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHH
Q 007362 268 CKGLDKFVIGQEKAKKVLSVAVYNHYKR-IYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 268 ~~~L~~~VvGqe~ak~~L~~av~~~~~r-l~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA 346 (606)
..+|.-.|.|.+.+|++|.-++.-.... +.+...-+| ..+|||.|.|-|.|+.|.|.+-
T Consensus 296 a~SLAPSI~GH~~vKkAillLLlGGvEk~L~NGshlRG--------------------DINiLlvGDPSvAKSQLLRyVL 355 (818)
T KOG0479|consen 296 ARSLAPSIYGHDYVKKAILLLLLGGVEKNLENGSHLRG--------------------DINILLVGDPSVAKSQLLRYVL 355 (818)
T ss_pred hhccCcccccHHHHHHHHHHHHhccceeccCCCceecc--------------------ceeEEEecCchHHHHHHHHHHH
Confidence 3445556899999999998777522111 111111111 4799999999999999999987
Q ss_pred HHhCCceeecc-hh---hhhhc----CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhhhhccccccCcchh
Q 007362 347 RHVNVPFVIAD-AT---TLTQA----GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKKAESLNISRDVSGE 418 (606)
Q Consensus 347 ~~l~~~fi~i~-~s---~l~~s----g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~ 418 (606)
+..-...-..- ++ -|+.+ ...| ++.+ - .+....+.++|+.|||+|+++.-
T Consensus 356 ntAplAI~TTGRGSSGVGLTAAVTtD~eTG---ERRL---E---AGAMVLADRGVVCIDEFDKMsDi------------- 413 (818)
T KOG0479|consen 356 NTAPLAIATTGRGSSGVGLTAAVTTDQETG---ERRL---E---AGAMVLADRGVVCIDEFDKMSDI------------- 413 (818)
T ss_pred hcccccccccCCCCCCccceeEEeeccccc---hhhh---h---cCceEEccCceEEehhcccccch-------------
Confidence 65422111000 00 01100 0011 1111 1 12233568899999999999776
Q ss_pred HHHHHHHHHHhceeeecCCCC
Q 007362 419 GVQQALLKMLEGTIVNVPEKG 439 (606)
Q Consensus 419 ~vq~~LL~~Leg~~~~i~~~g 439 (606)
-.-++-+.||...++|.+.|
T Consensus 414 -DRvAIHEVMEQqtVTIaKAG 433 (818)
T KOG0479|consen 414 -DRVAIHEVMEQQTVTIAKAG 433 (818)
T ss_pred -hHHHHHHHHhcceEEeEecc
Confidence 56688999998888888876
No 254
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.01 E-value=6.2e-05 Score=84.91 Aligned_cols=30 Identities=37% Similarity=0.543 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
..+||+||||||||+++++||++++..+.+
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 578999999999999999999999876665
No 255
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.88 E-value=2.9e-05 Score=80.75 Aligned_cols=199 Identities=17% Similarity=0.275 Sum_probs=97.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC-Cce--eecchhhhhhcCCcccchHHHHHHHHHhh----hhh---hhhcCCCEEE
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN-VPF--VIADATTLTQAGYVGEDVESILYKLLAQA----EFN---VEAAQQGMVY 395 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~-~~f--i~i~~s~l~~sg~vG~~~~~~l~~lf~~a----~~~---l~~a~~~ILf 395 (606)
.++||.||+|||||++++.+-+.+. ..+ ..++++..+. ...+..+++.. .+. ....+..|+|
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt--------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT--------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH--------HHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC--------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 7899999999999999988665553 222 2333332221 22222222211 111 1123557999
Q ss_pred EcccchhhhhhhccccccCcchhHHHHHHHHHHh-ceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHHHHHhh
Q 007362 396 IDEVDKITKKAESLNISRDVSGEGVQQALLKMLE-GTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEKTISER 474 (606)
Q Consensus 396 IDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le-g~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~~i~~~ 474 (606)
||+++.-.++.-. . ......|.++|| ++..+. .+..-....++.||++.+...
T Consensus 106 iDDlN~p~~d~yg---t-----q~~iElLRQ~i~~~g~yd~----------~~~~~~~i~~i~~vaa~~p~~-------- 159 (272)
T PF12775_consen 106 IDDLNMPQPDKYG---T-----QPPIELLRQLIDYGGFYDR----------KKLEWKSIEDIQFVAAMNPTG-------- 159 (272)
T ss_dssp EETTT-S---TTS----------HHHHHHHHHHHCSEEECT----------TTTEEEEECSEEEEEEESSTT--------
T ss_pred ecccCCCCCCCCC---C-----cCHHHHHHHHHHhcCcccC----------CCcEEEEEeeeEEEEecCCCC--------
Confidence 9999965443111 1 125677777888 444321 112234556777777654310
Q ss_pred hcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHH
Q 007362 475 RQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQY 554 (606)
Q Consensus 475 ~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~ 554 (606)
+ +..+.+-|++.| .++.+..++.+.+..|....+....+..
T Consensus 160 --------G------------------------------r~~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l~~~ 200 (272)
T PF12775_consen 160 --------G------------------------------RNPISPRFLRHF-NILNIPYPSDESLNTIFSSILQSHLKNG 200 (272)
T ss_dssp --------T--------------------------------SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHHHTCHT
T ss_pred --------C------------------------------CCCCChHHhhhe-EEEEecCCChHHHHHHHHHHHhhhcccC
Confidence 0 011344455555 4788888999999999886544332210
Q ss_pred HHHHhcCCcc------cccCHHHHHHHHHccC------CCCCChHHHHHHHHHHHHHH
Q 007362 555 KRLFSMNNVK------LHFTEKALRVIAKKAT------AKNTGARGLRAILESILTEA 600 (606)
Q Consensus 555 ~~~~~~~~i~------l~i~e~al~~La~~a~------~~~~GAR~L~~~Ie~~l~~a 600 (606)
.+.. .+. +..+=++.+.+.+..- ---+..|+|.++++-++...
T Consensus 201 --~f~~-~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~~~ 255 (272)
T PF12775_consen 201 --GFPE-DVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILLAS 255 (272)
T ss_dssp --TSSG-GGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHHHH
T ss_pred --CCCh-HHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHhcC
Confidence 0000 010 0111122333333211 12346899999999887543
No 256
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.88 E-value=1.6e-05 Score=77.47 Aligned_cols=83 Identities=23% Similarity=0.398 Sum_probs=51.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhc---CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~s---g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
.+++|+||+|||||.||.++++.+ +.....++..++... .+.....+..+..+ ....+|+|||+
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l----------~~~dlLilDDl 117 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRL----------KRVDLLILDDL 117 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHH----------HTSSCEEEETC
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcc----------ccccEeccccc
Confidence 789999999999999999999876 677777787766532 11111111222111 13469999999
Q ss_pred chhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 400 DKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 400 D~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
...... +...+.|.++++.
T Consensus 118 G~~~~~------------~~~~~~l~~ii~~ 136 (178)
T PF01695_consen 118 GYEPLS------------EWEAELLFEIIDE 136 (178)
T ss_dssp TSS---------------HHHHHCTHHHHHH
T ss_pred ceeeec------------ccccccchhhhhH
Confidence 854322 1256677778774
No 257
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.87 E-value=3.4e-05 Score=79.50 Aligned_cols=71 Identities=24% Similarity=0.403 Sum_probs=47.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhc---CCc-ccchHHHHHHHHHhhhhhhhhcCCCEEEEc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYV-GEDVESILYKLLAQAEFNVEAAQQGMVYID 397 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~s---g~v-G~~~~~~l~~lf~~a~~~l~~a~~~ILfID 397 (606)
..+++|+||||||||.||-+|++.+ +..++.+...++... .+. |.. +..+... ...--+||||
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~-~~~l~~~---------l~~~dlLIiD 174 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRL-EEKLLRE---------LKKVDLLIID 174 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCch-HHHHHHH---------hhcCCEEEEe
Confidence 4799999999999999999999987 577777887776632 010 111 1111111 1234699999
Q ss_pred ccchhhhh
Q 007362 398 EVDKITKK 405 (606)
Q Consensus 398 EiD~l~~~ 405 (606)
|+-.....
T Consensus 175 DlG~~~~~ 182 (254)
T COG1484 175 DIGYEPFS 182 (254)
T ss_pred cccCccCC
Confidence 99975443
No 258
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.0001 Score=75.93 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=55.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecch------hhhhhc---C--C---c--ccchHHHHHHHHHhhhhh-hh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA------TTLTQA---G--Y---V--GEDVESILYKLLAQAEFN-VE 387 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~------s~l~~s---g--~---v--G~~~~~~l~~lf~~a~~~-l~ 387 (606)
+..+||+||.|+||..+|.++|+.+-+.--.-.| ..+... + + . ... ...++++.+..... +.
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~-id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK-KEDALSIINKLNRPSVE 85 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC-HHHHHHHHHHHccCchh
Confidence 4789999999999999999999987432100001 111100 0 0 0 011 12333433322211 12
Q ss_pred hcCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 388 AAQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 388 ~a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
.+...|++||++|+++.. ..|+||+.||+
T Consensus 86 ~~~~KV~II~~ae~m~~~--------------AaNaLLK~LEE 114 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQ--------------SANSLLKLIEE 114 (261)
T ss_pred cCCCEEEEeccHhhhCHH--------------HHHHHHHhhcC
Confidence 234679999999999988 99999999995
No 259
>PRK09183 transposase/IS protein; Provisional
Probab=97.85 E-value=2.3e-05 Score=80.84 Aligned_cols=88 Identities=19% Similarity=0.312 Sum_probs=52.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
..+++|+||||||||+||.+|+..+ +..+..+++.++... +........+...+... .....+|+|||++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~-l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdlg~ 175 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ-LSTAQRQGRYKTTLQRG-----VMAPRLLIIDEIGY 175 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH-HHHHHHCCcHHHHHHHH-----hcCCCEEEEccccc
Confidence 4789999999999999999998764 555656666554421 10000000111222211 12456999999986
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
+.... +.++.|+++++.
T Consensus 176 ~~~~~------------~~~~~lf~li~~ 192 (259)
T PRK09183 176 LPFSQ------------EEANLFFQVIAK 192 (259)
T ss_pred CCCCh------------HHHHHHHHHHHH
Confidence 54431 256678888764
No 260
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.81 E-value=0.00022 Score=74.90 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+..|.|+|+-|+|||++.+.+-+.+.
T Consensus 20 ~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 20 PFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999988874
No 261
>PF05729 NACHT: NACHT domain
Probab=97.78 E-value=0.00024 Score=66.34 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l 349 (606)
.++|+|+||+|||++++.++..+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 48999999999999999999776
No 262
>PRK06921 hypothetical protein; Provisional
Probab=97.76 E-value=0.00011 Score=76.26 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=29.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh----CCceeecchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADATTLT 362 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l----~~~fi~i~~s~l~ 362 (606)
.+++|+|+||||||+|+.+||+.+ +..++++...++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~ 158 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGF 158 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHH
Confidence 679999999999999999999976 3455666665543
No 263
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.76 E-value=8.3e-05 Score=66.26 Aligned_cols=23 Identities=43% Similarity=0.752 Sum_probs=20.8
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhC
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~ 350 (606)
|.|+||||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998773
No 264
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.74 E-value=4.6e-05 Score=80.60 Aligned_cols=67 Identities=13% Similarity=0.284 Sum_probs=43.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhc---CCcccchHHHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQA---GYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~s---g~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
.+++|+||+|||||+||.++|+.+ +.....+.+.++... .+ +.. .+...++.. ..-.+|+|||+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~-~~~---~~~~~l~~l------~~~dlLiIDDi 226 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSI-SDG---SVKEKIDAV------KEAPVLMLDDI 226 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHH-hcC---cHHHHHHHh------cCCCEEEEecC
Confidence 689999999999999999999988 566666666654421 01 000 011111111 24569999999
Q ss_pred chh
Q 007362 400 DKI 402 (606)
Q Consensus 400 D~l 402 (606)
..-
T Consensus 227 G~e 229 (306)
T PRK08939 227 GAE 229 (306)
T ss_pred CCc
Confidence 854
No 265
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.71 E-value=0.0001 Score=78.73 Aligned_cols=86 Identities=20% Similarity=0.322 Sum_probs=53.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCCccc--chHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGYVGE--DVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~vG~--~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
.+++|+||+|||||+||.++|+.+ +..++.+++.++... +... .........++.. ..--+|+||++.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~-l~~~~~~~~~~~~~~~~~l------~~~DLLIIDDlG 256 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI-LREIRFNNDKELEEVYDLL------INCDLLIIDDLG 256 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH-HHHHHhccchhHHHHHHHh------ccCCEEEEeccC
Confidence 689999999999999999999987 567777777766531 0000 0000000001111 133599999997
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
..... +..++.|..+++.
T Consensus 257 ~e~~t------------~~~~~~Lf~iin~ 274 (329)
T PRK06835 257 TEKIT------------EFSKSELFNLINK 274 (329)
T ss_pred CCCCC------------HHHHHHHHHHHHH
Confidence 64322 1266778888774
No 266
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.69 E-value=0.0001 Score=69.55 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..+||+.|.|||||||+|+.||..++.+++.++
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 378999999999999999999999988887544
No 267
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.60 E-value=0.00025 Score=77.56 Aligned_cols=81 Identities=19% Similarity=0.263 Sum_probs=50.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH--h--CCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH--V--NVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~--l--~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
..|+++.||+|||||++|.+|+.. + | ..+++..+. ..+....... -...-+|+|||+.
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf-------------~~L~~~~lg~--v~~~DlLI~DEvg 270 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLF-------------YNISTRQIGL--VGRWDVVAFDEVA 270 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHH-------------HHHHHHHHhh--hccCCEEEEEcCC
Confidence 389999999999999999998866 2 2 122222222 2222111111 1345799999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhceee
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEGTIV 433 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~ 433 (606)
.+..... .+.++.|-..|+....
T Consensus 271 ylp~~~~----------~~~v~imK~yMesg~f 293 (449)
T TIGR02688 271 TLKFAKP----------KELIGILKNYMESGSF 293 (449)
T ss_pred CCcCCch----------HHHHHHHHHHHHhCce
Confidence 8655421 2378888888984444
No 268
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.57 E-value=0.0017 Score=69.79 Aligned_cols=64 Identities=27% Similarity=0.271 Sum_probs=48.2
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+...|.+.|..++.|...+-+. + ...|.++.|+|-.|||||.+.+.+-+.++
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~----------------~------------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n 55 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNN----------------S------------CTIPSIVHIYGHSGTGKTYLVRQLLRKLN 55 (438)
T ss_pred cccCccchHHHHHHHHHHhCCC----------------C------------cccceeEEEeccCCCchhHHHHHHHhhcC
Confidence 3444777888888887766210 0 01247889999999999999999999999
Q ss_pred Cceeecchhhhh
Q 007362 351 VPFVIADATTLT 362 (606)
Q Consensus 351 ~~fi~i~~s~l~ 362 (606)
.+.+.+++.+..
T Consensus 56 ~~~vw~n~~ecf 67 (438)
T KOG2543|consen 56 LENVWLNCVECF 67 (438)
T ss_pred CcceeeehHHhc
Confidence 999888877543
No 269
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.54 E-value=0.0005 Score=74.41 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=25.6
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
.++.++.|||++|+|||+|.-++.+.+..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 45699999999999999999999988843
No 270
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00016 Score=81.08 Aligned_cols=97 Identities=35% Similarity=0.575 Sum_probs=75.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKIT 403 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~ 403 (606)
++.+++++||||||||+++++++.. +..+..++..... .+|+|.. +..++.++..+... .++++++||+|.+.
T Consensus 17 ~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~~----~~~ii~~d~~~~~~ 89 (494)
T COG0464 17 PPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGES-ELRLRELFEEAEKL----APSIIFIDEIDALA 89 (494)
T ss_pred CCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhh-hhhhhHH-HHHHHHHHHHHHHh----CCCeEeechhhhcc
Confidence 3588999999999999999999999 6666667776666 4677877 56677788777655 56999999999999
Q ss_pred hhhhccccccCcchhHHHHHHHHHHhc
Q 007362 404 KKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 404 ~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
+.+.. ......+.+...|+..|++
T Consensus 90 ~~~~~---~~~~~~~~v~~~l~~~~d~ 113 (494)
T COG0464 90 PKRSS---DQGEVERRVVAQLLALMDG 113 (494)
T ss_pred cCccc---cccchhhHHHHHHHHhccc
Confidence 88665 2223334588999999885
No 271
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.51 E-value=7.8e-05 Score=66.79 Aligned_cols=31 Identities=42% Similarity=0.777 Sum_probs=27.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
|+|.|+||+||||+|+.||+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7999999999999999999999888776555
No 272
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.42 E-value=0.00023 Score=67.99 Aligned_cols=25 Identities=44% Similarity=0.664 Sum_probs=18.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|+|++|+|||++.+.+...+
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3789999999999999999888766
No 273
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.41 E-value=0.0003 Score=65.12 Aligned_cols=32 Identities=47% Similarity=0.626 Sum_probs=25.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh---CCceeecch
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~ 358 (606)
+++|+||||+|||+++..++..+ +.+.+.++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 37999999999999999999877 344444443
No 274
>PHA02624 large T antigen; Provisional
Probab=97.39 E-value=0.0007 Score=76.88 Aligned_cols=93 Identities=25% Similarity=0.254 Sum_probs=56.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~ 404 (606)
+..++|+||||||||+++.+|.+.++...+.+++..-...-|.+ . ....-+++||++-.-.-
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~--------------p----l~D~~~~l~dD~t~~~~ 492 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELG--------------C----AIDQFMVVFEDVKGQPA 492 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhh--------------h----hhhceEEEeeecccccc
Confidence 46899999999999999999999996666666643211111110 0 01345899999864433
Q ss_pred hhhccccccCcchhHHHHHHHHHHhce-eeecCCC
Q 007362 405 KAESLNISRDVSGEGVQQALLKMLEGT-IVNVPEK 438 (606)
Q Consensus 405 ~r~~~~~~~~~s~~~vq~~LL~~Leg~-~~~i~~~ 438 (606)
......-+.-. .-...|...|||. .+++..+
T Consensus 493 ~~~~Lp~G~~~---dNl~~lRn~LDG~V~v~ld~K 524 (647)
T PHA02624 493 DNKDLPSGQGM---NNLDNLRDYLDGSVPVNLEKK 524 (647)
T ss_pred ccccCCccccc---chhhHHHhhcCCCCccccchh
Confidence 21111001110 1347799999987 6766544
No 275
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.38 E-value=0.0049 Score=63.13 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=44.6
Q ss_pred ccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHHHHHHH
Q 007362 519 PEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILT 598 (606)
Q Consensus 519 PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~Ie~~l~ 598 (606)
.++..|++..+.++|++.++....+.. ..+.. ..-+-.++++++..|.... +.+-++|.+++.
T Consensus 185 ~e~~~R~~ir~~l~P~~~~~t~~yl~~----~Le~a------~~~~~l~~~~a~~~i~~~s-------qg~P~lin~~~~ 247 (269)
T COG3267 185 RELEQRIDIRIELPPLTEAETGLYLRH----RLEGA------GLPEPLFSDDALLLIHEAS-------QGIPRLINNLAT 247 (269)
T ss_pred HhhhheEEEEEecCCcChHHHHHHHHH----HHhcc------CCCcccCChhHHHHHHHHh-------ccchHHHHHHHH
Confidence 467789987799999999876666653 22221 1223348899999998763 235667777666
Q ss_pred HHHH
Q 007362 599 EAMY 602 (606)
Q Consensus 599 ~al~ 602 (606)
.||.
T Consensus 248 ~Al~ 251 (269)
T COG3267 248 LALD 251 (269)
T ss_pred HHHH
Confidence 6664
No 276
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.34 E-value=0.00056 Score=67.63 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=47.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhh-----hhhcCCcccchHHHHHHHHHhhhhhh-----hhcCCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT-----LTQAGYVGEDVESILYKLLAQAEFNV-----EAAQQG 392 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~-----l~~sg~vG~~~~~~l~~lf~~a~~~l-----~~a~~~ 392 (606)
..++|.|+||||||++.+.+.+.+ +..++.+..+. +.+. .+.. ...+..++....... ......
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~--~~~~-a~Ti~~~l~~~~~~~~~~~~~~~~~~ 95 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK--TGIE-AQTIHSFLYRIPNGDDEGRPELPKKD 95 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH--HTS--EEEHHHHTTEECCEECCSSCC-TSTS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh--hCcc-hhhHHHHHhcCCcccccccccCCccc
Confidence 568899999999999999988776 34444333321 1110 0000 001111111111100 023457
Q ss_pred EEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 393 MVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 393 ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+|||||+.++... ....|+..+.
T Consensus 96 vliVDEasmv~~~--------------~~~~ll~~~~ 118 (196)
T PF13604_consen 96 VLIVDEASMVDSR--------------QLARLLRLAK 118 (196)
T ss_dssp EEEESSGGG-BHH--------------HHHHHHHHS-
T ss_pred EEEEecccccCHH--------------HHHHHHHHHH
Confidence 9999999998776 7777777754
No 277
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00029 Score=70.32 Aligned_cols=116 Identities=24% Similarity=0.395 Sum_probs=67.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh------hhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT------TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s------~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
..|.+.||.|+||+|+|+.||+.++.+|+..-.. .....+.--.+ +..+..++......+. ..--+|++.-
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d-~~~~~~l~~~~~i~f~--~~~~v~l~ge 81 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDD-EDALVALAKELDISFV--NDDRVFLNGE 81 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCcc-HHHHHHHHHhCCceec--ccceEEECCc
Confidence 4689999999999999999999999887643222 11112222222 4444455554433221 1134677776
Q ss_pred chhhhhhhccccccCcch----hHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCce
Q 007362 400 DKITKKAESLNISRDVSG----EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDI 456 (606)
Q Consensus 400 D~l~~~r~~~~~~~~~s~----~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~ni 456 (606)
| ++...++.++++.+|. +++.+.|++... .+.+ ...+++++.+++
T Consensus 82 d-vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr----~~a~-------~~~~~V~dGRDi 130 (222)
T COG0283 82 D-VSEEIRTEEVGNAASKVAAIPEVREALVKLQR----AFAK-------NGPGIVADGRDI 130 (222)
T ss_pred h-hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHH----HHHh-------cCCCEEEecCCC
Confidence 7 5566666677777776 344454444422 1111 124567777776
No 278
>PHA00729 NTP-binding motif containing protein
Probab=97.33 E-value=0.00038 Score=70.39 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.+++|+|+||||||++|.+|++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 279
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.33 E-value=0.0002 Score=67.91 Aligned_cols=33 Identities=30% Similarity=0.615 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
+..|+|+|+||||||++|+.||+.++.+|+..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 468999999999999999999999999888654
No 280
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.33 E-value=0.033 Score=61.92 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=23.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+..++|+|++|+||||++..||..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 36789999999999999999999877
No 281
>PRK08118 topology modulation protein; Reviewed
Probab=97.28 E-value=0.00063 Score=65.58 Aligned_cols=43 Identities=33% Similarity=0.570 Sum_probs=34.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGED 370 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~ 370 (606)
.|++.||||+||||+|+.|++.++.+++.++.-... .+|...+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~-~~w~~~~ 45 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK-PNWEGVP 45 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc-cCCcCCC
Confidence 589999999999999999999999999888864322 3444444
No 282
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.25 E-value=0.0092 Score=60.89 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=26.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l 361 (606)
|+|.|+||+||||+|+.|++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7999999999999999999987 345555554433
No 283
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.23 E-value=0.0047 Score=69.02 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..+||+||+||||||+.+.|+++++..+++-.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 67999999999999999999999998776533
No 284
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.23 E-value=0.0062 Score=68.69 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=69.7
Q ss_pred cccCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh------hhhhcCCcccchHHHHHHHHHhhhhhhhh--cCCCE
Q 007362 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT------TLTQAGYVGEDVESILYKLLAQAEFNVEA--AQQGM 393 (606)
Q Consensus 322 ~~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s------~l~~sg~vG~~~~~~l~~lf~~a~~~l~~--a~~~I 393 (606)
...+..|.+.||+|+||||+|+.||+.++..++..+.- ...+.++. .+....+..+.......+.. ..+..
T Consensus 281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~-~~~~~~l~~l~~~l~~~~~~~~~~~~~ 359 (512)
T PRK13477 281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGID-PQDEEALAELLSDLKIELKPSSGSPQR 359 (512)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcC-CcCHHHHHHHHhcCCeeeccCCCCCce
Confidence 34567899999999999999999999998655532211 11112221 12123333333333222211 12246
Q ss_pred EEEcccchhhhhhhccccccCcch----hHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeec
Q 007362 394 VYIDEVDKITKKAESLNISRDVSG----EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC 460 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~----~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~ 460 (606)
|++|.-| +....++.+++..+|. +.+...|++.... + ....+++++++++-++.
T Consensus 360 i~~~~~d-v~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~----~--------~~~~~iV~eGRDigtvV 417 (512)
T PRK13477 360 VWINGED-VTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQR----I--------GEKGGLVAEGRDIGTHV 417 (512)
T ss_pred EEeCCcc-hHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHH----H--------hhcCCEEEEcccceeEE
Confidence 8888877 6666666667666665 4455555555321 1 12235677777664443
No 285
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.22 E-value=0.0028 Score=73.91 Aligned_cols=118 Identities=21% Similarity=0.271 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh------hhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT------TLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEV 399 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s------~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEi 399 (606)
..|.+.||+|+|||++|+.||+.++.+|+....- ...+.++.-.+ +..+.++.......+. ..-||+|+-
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~ 518 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDD-EAAIAALARGLPVRFE---GDRIWLGGE 518 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCC-HHHHHHHHhcCCeeec---CCeEEECCe
Confidence 4689999999999999999999999988533311 11222322222 3333344443333321 224899987
Q ss_pred chhhhhhhccccccCcch----hHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeec
Q 007362 400 DKITKKAESLNISRDVSG----EGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFIC 460 (606)
Q Consensus 400 D~l~~~r~~~~~~~~~s~----~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~ 460 (606)
| +....++.+++..+|. +.+...|++.... + .....++++.+++-++.
T Consensus 519 ~-~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr~----~--------~~~~~~v~eGRdigtvv 570 (661)
T PRK11860 519 D-VTDAIRTEAAGMGASRVSALPAVRAALLALQRS----F--------RRLPGLVADGRDMGTVI 570 (661)
T ss_pred E-chhhhCcHHHHHHHHHHhCCHHHHHHHHHHHHH----H--------hhCCCEEEECCCCccEE
Confidence 6 7778888888777776 3455555544321 1 12235677777764443
No 286
>PRK07261 topology modulation protein; Provisional
Probab=97.20 E-value=0.00074 Score=65.29 Aligned_cols=43 Identities=30% Similarity=0.587 Sum_probs=33.9
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGED 370 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~ 370 (606)
.|++.|+||+||||+|+.|++.++.+++.+|..... .+|...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence 389999999999999999999999998887765433 3444444
No 287
>PRK13947 shikimate kinase; Provisional
Probab=97.18 E-value=0.00032 Score=66.89 Aligned_cols=33 Identities=33% Similarity=0.586 Sum_probs=30.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
.+|+|.|+||+|||++|+.||+.++.+|+..+.
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 369999999999999999999999999987664
No 288
>PHA02774 E1; Provisional
Probab=97.14 E-value=0.0013 Score=74.35 Aligned_cols=79 Identities=18% Similarity=0.350 Sum_probs=52.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCcee-ecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV-IADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITK 404 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi-~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~ 404 (606)
..++|+||||||||++|-+|++.++...+ .++... .-| +..+ ...-|++|||+-.-.-
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw--------Lqpl----------~d~ki~vlDD~t~~~w 493 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW--------LQPL----------ADAKIALLDDATHPCW 493 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc--------cchh----------ccCCEEEEecCcchHH
Confidence 68999999999999999999999864433 244321 111 1011 1235999999932211
Q ss_pred hhhccccccCcchhHHHHHHHHHHhceeeecCCC
Q 007362 405 KAESLNISRDVSGEGVQQALLKMLEGTIVNVPEK 438 (606)
Q Consensus 405 ~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~ 438 (606)
. -+...|..+|+|..+.+..+
T Consensus 494 ~-------------y~d~~Lrn~LdG~~v~lD~K 514 (613)
T PHA02774 494 D-------------YIDTYLRNALDGNPVSIDCK 514 (613)
T ss_pred H-------------HHHHHHHHHcCCCcceeeec
Confidence 1 15557889999988777654
No 289
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.13 E-value=0.00055 Score=77.42 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=43.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh-CCc
Q 007362 274 FVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV-NVP 352 (606)
Q Consensus 274 ~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l-~~~ 352 (606)
.++|++++++.|.+.+..+...+. .....++|.||||+|||+||+.||+.+ ..+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~-------------------------~~~~IL~LvGPpG~GKSsLa~~la~~le~~~ 131 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLE-------------------------EKKQILYLLGPVGGGKSSLAERLKSLMERVP 131 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcC-------------------------CCCceEEEecCCCCCchHHHHHHHHHHHhCc
Confidence 379999999999887754333220 113689999999999999999999987 345
Q ss_pred eeecc
Q 007362 353 FVIAD 357 (606)
Q Consensus 353 fi~i~ 357 (606)
++.+.
T Consensus 132 ~Y~~k 136 (644)
T PRK15455 132 IYVLK 136 (644)
T ss_pred ceeec
Confidence 55443
No 290
>PRK03839 putative kinase; Provisional
Probab=97.09 E-value=0.00042 Score=66.94 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=28.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.|+|.|+||+||||+|+.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999987655
No 291
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.08 E-value=0.079 Score=58.66 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~ 358 (606)
+..|+|.|++|+||||++..||..+ +.....+++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~ 136 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCA 136 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 4789999999999999999999877 444444444
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.0038 Score=59.91 Aligned_cols=24 Identities=29% Similarity=0.545 Sum_probs=22.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..|+++|+||+||||++..+|+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 579999999999999999999887
No 293
>PRK10536 hypothetical protein; Provisional
Probab=97.07 E-value=0.0034 Score=64.75 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..+++.||+|||||+||.+++..
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 294
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.07 E-value=0.00051 Score=63.98 Aligned_cols=31 Identities=42% Similarity=0.765 Sum_probs=28.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
+|+|+|+||+|||++|+.||+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999888665
No 295
>PRK00625 shikimate kinase; Provisional
Probab=97.05 E-value=0.00051 Score=66.79 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=29.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
+|+|.|.||+||||+++.||+.++.+|+.+|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 59999999999999999999999999987664
No 296
>PRK04296 thymidine kinase; Provisional
Probab=97.05 E-value=0.0021 Score=63.16 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=20.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++++||+|+||||++..++..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 458999999999999998877665
No 297
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.99 E-value=0.00091 Score=67.55 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA 346 (606)
+..+||||+||+|||++|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 4679999999999999999987
No 298
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.98 E-value=0.0011 Score=72.05 Aligned_cols=81 Identities=17% Similarity=0.352 Sum_probs=48.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc------eeecchh------hh--------hhcCCcccchHHHHH---HHHHhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------FVIADAT------TL--------TQAGYVGEDVESILY---KLLAQA 382 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~------fi~i~~s------~l--------~~sg~vG~~~~~~l~---~lf~~a 382 (606)
.-.+|.||||+|||+|++.|++.+... ++.+... ++ ..+.+ .......++ ..+..+
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~-d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTF-DEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECC-CCCHHHHHHHHHHHHHHH
Confidence 458999999999999999999877431 1111110 11 10111 111222222 344455
Q ss_pred hhhhhhcCCCEEEEcccchhhhhhh
Q 007362 383 EFNVEAAQQGMVYIDEVDKITKKAE 407 (606)
Q Consensus 383 ~~~l~~a~~~ILfIDEiD~l~~~r~ 407 (606)
.......+..+||||||+++...-+
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHHH
Confidence 5555556788999999999987633
No 299
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.97 E-value=0.00064 Score=65.96 Aligned_cols=34 Identities=35% Similarity=0.734 Sum_probs=30.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
.+|+|.|++|+||||+.++||+.|+.+|+..|..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~ 36 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE 36 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH
Confidence 5799999999999999999999999999866543
No 300
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.95 E-value=0.0024 Score=64.29 Aligned_cols=102 Identities=21% Similarity=0.330 Sum_probs=56.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh------hhhhcCCcccchHHHHHHHHHhhhhhhhhcC-CCEEEEcc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT------TLTQAGYVGEDVESILYKLLAQAEFNVEAAQ-QGMVYIDE 398 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s------~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~-~~ILfIDE 398 (606)
..|.|.||+|+||||+++.||+.++.+++....- .....++.-.+ +..+..+.......+.... ..-++||.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTS-EDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCC-HHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 4689999999999999999999998777643211 01112222122 3333334333322221111 12477887
Q ss_pred cchhhhhhhccccccCcch----hHHHHHHHHHHh
Q 007362 399 VDKITKKAESLNISRDVSG----EGVQQALLKMLE 429 (606)
Q Consensus 399 iD~l~~~r~~~~~~~~~s~----~~vq~~LL~~Le 429 (606)
-+ +....++.+++..+|. +.+...|++.+.
T Consensus 82 ~~-v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr 115 (217)
T TIGR00017 82 ED-VSEAIRTQEVANAASKVAVFPKVREALLKRQQ 115 (217)
T ss_pred cc-hHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66 5555555555554444 445555555543
No 301
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.95 E-value=0.0013 Score=67.56 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=48.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc------eeec------chhhhhhc-------CCcccchHHH---HHHHHHhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------FVIA------DATTLTQA-------GYVGEDVESI---LYKLLAQAE 383 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~------fi~i------~~s~l~~s-------g~vG~~~~~~---l~~lf~~a~ 383 (606)
..++|.||+|+|||++++.+++.+... ++.+ +..++... .-.+...... ...+...+.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~ 96 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAK 96 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 679999999999999999999887432 2221 11111111 0011122221 223344444
Q ss_pred hhhhhcCCCEEEEcccchhhhhhh
Q 007362 384 FNVEAAQQGMVYIDEVDKITKKAE 407 (606)
Q Consensus 384 ~~l~~a~~~ILfIDEiD~l~~~r~ 407 (606)
......++.+||+||+.++...-+
T Consensus 97 ~~~~~G~~vll~iDei~r~a~a~~ 120 (249)
T cd01128 97 RLVEHGKDVVILLDSITRLARAYN 120 (249)
T ss_pred HHHHCCCCEEEEEECHHHhhhhhh
Confidence 433445678999999999987643
No 302
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.95 E-value=0.00055 Score=62.93 Aligned_cols=30 Identities=43% Similarity=0.751 Sum_probs=25.4
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
|+|.||||+||||+|+.+++.++..++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D 31 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQD 31 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeHH
Confidence 799999999999999999999985554433
No 303
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.94 E-value=0.0011 Score=82.92 Aligned_cols=114 Identities=24% Similarity=0.353 Sum_probs=71.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhc-CCcc----cchHHHHHHHHHhhhhhhhhcCCCEEEEcccc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQA-GYVG----EDVESILYKLLAQAEFNVEAAQQGMVYIDEVD 400 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~s-g~vG----~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD 400 (606)
..+||.||+++|||.+++-+|+..+..+++++-.+.++. .|+| .+.... .|....-.-+.-++..+|+||++
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l---~freg~LV~Alr~G~~~vlD~ln 517 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDL---VFREGVLVQALRNGDWIVLDELN 517 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCe---eeehhHHHHHHHhCCEEEecccc
Confidence 579999999999999999999999999988776543321 1222 110000 01000000112267899999999
Q ss_pred hhhhhhhccccccCcchhHHHHHHHHHHhc-eeeecCCCCcccCCCCCcEEEecCce
Q 007362 401 KITKKAESLNISRDVSGEGVQQALLKMLEG-TIVNVPEKGARKHPRGDSIQMDTKDI 456 (606)
Q Consensus 401 ~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg-~~~~i~~~g~~~~~~~~~v~idt~ni 456 (606)
..+.+ ++.+|.++++. +.+.+++.-........+..+.+.|.
T Consensus 518 la~~d--------------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 518 LAPHD--------------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred ccchH--------------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 87766 99999999984 77776665433333333333333333
No 304
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.93 E-value=0.0024 Score=60.70 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=25.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ 363 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~ 363 (606)
|+|+|++|||||||++.|++. +.+++.-.+..+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 799999999999999999998 88877555555543
No 305
>PRK06217 hypothetical protein; Validated
Probab=96.92 E-value=0.00076 Score=65.60 Aligned_cols=32 Identities=31% Similarity=0.610 Sum_probs=29.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
.|+|.|+||+||||+|+.|++.++.+++..|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~ 34 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD 34 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence 59999999999999999999999999887664
No 306
>PRK14532 adenylate kinase; Provisional
Probab=96.90 E-value=0.00076 Score=65.55 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
+|+|.||||+||||+|+.||+.++..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 489999999999999999999998777654
No 307
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.89 E-value=0.008 Score=70.72 Aligned_cols=205 Identities=17% Similarity=0.191 Sum_probs=97.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh------hhhcCCcccc----h---HHHHHHHHHhhhhhhh-hcCCC
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT------LTQAGYVGED----V---ESILYKLLAQAEFNVE-AAQQG 392 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~------l~~sg~vG~~----~---~~~l~~lf~~a~~~l~-~a~~~ 392 (606)
.|.|.|||||||||+|+.||+.++..|+....-. ..+.+..-.+ . ...+..++......+. ....+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDSP 82 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCCc
Confidence 5899999999999999999999987766433210 0111100000 0 1111122211111110 11234
Q ss_pred EEEEcccchhhhhhhccccccCcch----hHHHHHHHHHHhceeeecCCCCc-ccCCCCCcEEEecCceeeeccCCCc--
Q 007362 393 MVYIDEVDKITKKAESLNISRDVSG----EGVQQALLKMLEGTIVNVPEKGA-RKHPRGDSIQMDTKDILFICGGAFV-- 465 (606)
Q Consensus 393 ILfIDEiD~l~~~r~~~~~~~~~s~----~~vq~~LL~~Leg~~~~i~~~g~-~~~~~~~~v~idt~nii~I~tgn~~-- 465 (606)
-++++..+ +....++.+++..+|. +.+.+.|+........ ..+. ........++++.+++-++.--+..
T Consensus 83 ~i~~~~~~-v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr~~~~---~~~~~~~~~~~~~~v~eGRdigtvv~p~a~~K 158 (712)
T PRK09518 83 GVFADGED-ISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQRAYIA---REASADSFSGGLGIVAEGRDITTVVAPDAEVR 158 (712)
T ss_pred EEEECCeE-chHhhCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHh---hcCccccccccCcEEEecCccceEEecCCCeE
Confidence 57777766 5555555555544443 2344444443221000 0000 0001223688888887555422110
Q ss_pred -----ChHHHHHhhhcccCCCcCcccccccccccchhHhHHHHHhhhcchhhhhccCcccccccCC--eEEEcCCcCHHH
Q 007362 466 -----DLEKTISERRQDSSIGFGAPVRANMRAGVTDAAVTSSLLESVESSDLIAYGLIPEFVGRFP--ILVSLTALTEDQ 538 (606)
Q Consensus 466 -----~l~~~i~~~~~~~~igf~~~~~~~~~~~~~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d--~iI~f~~Ls~ee 538 (606)
+++.- ..||..... ..+..++...+.++-+... ..+.| +...+ .+|.-..++.++
T Consensus 159 ~~l~A~~~~R-a~Rr~~~~~------------~~~~~~~~~~~~~Rd~~d~---R~~~p--l~~~~da~~idts~~~~~~ 220 (712)
T PRK09518 159 ILLTAREEVR-QARRSGQDR------------SETPGVVLEDVAARDEADS---KVTSF--LSAADGVTTLDNSDLDFDE 220 (712)
T ss_pred EEEECCHHHH-HHHHHHhhh------------cCCHHHHHHHHHHHhhhcc---cccCC--CCCCCCeEEEECCCCCHHH
Confidence 11111 112211100 1345566666666644322 22333 55565 366677899988
Q ss_pred HHHHHhhhHHHHHHH
Q 007362 539 LVKVLTEPKNALGKQ 553 (606)
Q Consensus 539 l~~Il~~~l~~L~k~ 553 (606)
+..++...+..+...
T Consensus 221 v~~~i~~~i~~~~~~ 235 (712)
T PRK09518 221 TLDLLIGLVEDAIEE 235 (712)
T ss_pred HHHHHHHHHHhhhhh
Confidence 888777655555443
No 308
>PRK13948 shikimate kinase; Provisional
Probab=96.89 E-value=0.001 Score=65.32 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=31.8
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
++.+|+|.|.+|+|||++++.||+.++.+|+..|.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~ 43 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDR 43 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCH
Confidence 45889999999999999999999999999987663
No 309
>PRK13949 shikimate kinase; Provisional
Probab=96.88 E-value=0.00086 Score=64.80 Aligned_cols=33 Identities=39% Similarity=0.661 Sum_probs=30.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
..|+|.|+||+|||++++.||+.++.+|+..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 369999999999999999999999999987764
No 310
>PRK14974 cell division protein FtsY; Provisional
Probab=96.88 E-value=0.012 Score=63.27 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.|++|+||||++..+|..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999998776
No 311
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.85 E-value=0.00097 Score=61.40 Aligned_cols=30 Identities=37% Similarity=0.739 Sum_probs=28.1
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
|+|.|+||+|||++|+.||+.++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999998766
No 312
>PRK06762 hypothetical protein; Provisional
Probab=96.84 E-value=0.0016 Score=61.90 Aligned_cols=36 Identities=25% Similarity=0.454 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l 361 (606)
.-|+|.|+||+||||+|+.|++.++..++.++...+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 568999999999999999999998544544554433
No 313
>PRK14530 adenylate kinase; Provisional
Probab=96.84 E-value=0.001 Score=66.31 Aligned_cols=31 Identities=32% Similarity=0.546 Sum_probs=27.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
..|+|.||||+||||+|+.||+.++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 5799999999999999999999998877643
No 314
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.82 E-value=0.0013 Score=63.63 Aligned_cols=23 Identities=35% Similarity=0.712 Sum_probs=20.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l 349 (606)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999888
No 315
>PRK14531 adenylate kinase; Provisional
Probab=96.81 E-value=0.0011 Score=64.45 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
..|+|.||||+||||+++.||+.++.+++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 569999999999999999999999887764
No 316
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.81 E-value=0.001 Score=64.10 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=25.4
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
|+|.|+||+||||+|+.||+.++..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999998655543
No 317
>PRK13946 shikimate kinase; Provisional
Probab=96.76 E-value=0.0013 Score=64.13 Aligned_cols=34 Identities=38% Similarity=0.683 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
+..|+|.|.+|+|||++++.||+.++.+|+..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4789999999999999999999999999987774
No 318
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.76 E-value=0.0034 Score=60.40 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=22.6
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh---CCceeecc
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIAD 357 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l---~~~fi~i~ 357 (606)
+|++||||||||+++..++... +.+.+.++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 7999999999999998876543 44444443
No 319
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.75 E-value=0.0012 Score=61.62 Aligned_cols=30 Identities=40% Similarity=0.789 Sum_probs=26.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
++|.|+||+||||+|+.|++.++..++..|
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D 31 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGD 31 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCc
Confidence 789999999999999999999887776433
No 320
>PF14516 AAA_35: AAA-like domain
Probab=96.75 E-value=0.026 Score=60.36 Aligned_cols=36 Identities=28% Similarity=0.297 Sum_probs=29.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l 361 (606)
..+.+.||..+|||++...+.+.+ +...+.+++..+
T Consensus 32 ~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 32 SYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred CEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 779999999999999998887666 566666666653
No 321
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.74 E-value=0.0013 Score=63.85 Aligned_cols=29 Identities=41% Similarity=0.763 Sum_probs=26.4
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
|+|.|+||+||||+|+.||+.++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998877654
No 322
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.68 E-value=0.0017 Score=62.12 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=30.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
.+++|.|.+|+|||++|+.||+.++.+|+..+..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~ 36 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW 36 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 4689999999999999999999999999866543
No 323
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.67 E-value=0.0016 Score=62.74 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=28.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
..|+|.|+||+||||+|+.|++.++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 5799999999999999999999987777654443
No 324
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.66 E-value=0.0014 Score=62.21 Aligned_cols=30 Identities=40% Similarity=0.691 Sum_probs=25.8
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
|+|.||+|+||||+|+.|++.++..++..+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D 30 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGD 30 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCc
Confidence 578999999999999999999987766443
No 325
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.65 E-value=0.011 Score=65.04 Aligned_cols=68 Identities=19% Similarity=0.381 Sum_probs=42.2
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
.++|+||-.+||||+.+.+.+.+-..++.++..++.... ......+..+. ..... ....||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~---~~l~d~~~~~~-~~~~~----~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDR---IELLDLLRAYI-ELKER----EKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcch---hhHHHHHHHHH-Hhhcc----CCceEEEecccCc
Confidence 799999999999999999998885545555555443211 11111111111 11111 4579999999965
No 326
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.65 E-value=0.0031 Score=68.81 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=47.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc------eeecc------hhhhhhc-------CCcccchHH---HHHHHHHhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP------FVIAD------ATTLTQA-------GYVGEDVES---ILYKLLAQAE 383 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~------fi~i~------~s~l~~s-------g~vG~~~~~---~l~~lf~~a~ 383 (606)
..++|.||+|+|||++++.|++.+... ++.+. ..++... .-.+..... ....+.+.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 669999999999999999999986322 11111 0111100 001112111 1223334444
Q ss_pred hhhhhcCCCEEEEcccchhhhh
Q 007362 384 FNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 384 ~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
......+..||||||++++...
T Consensus 249 ~~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHcCCCeEEEEEChhHHHHH
Confidence 4445567789999999999875
No 327
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.63 E-value=0.0018 Score=62.60 Aligned_cols=33 Identities=36% Similarity=0.759 Sum_probs=30.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
.+|+|.|++|+|||++++.||+.++.+|+..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 679999999999999999999999999887765
No 328
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.62 E-value=0.0068 Score=57.20 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=26.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh---CCceeecchhh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT 360 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~ 360 (606)
++|.|+||+|||++|+.|+..+ +...+.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 7899999999999999999998 55555555443
No 329
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.60 E-value=0.0016 Score=62.52 Aligned_cols=29 Identities=38% Similarity=0.596 Sum_probs=26.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
.|.+.|||||||||+|+.||+.++.+++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceee
Confidence 37899999999999999999999999875
No 330
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.58 E-value=0.0036 Score=66.34 Aligned_cols=34 Identities=35% Similarity=0.660 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
...|+|.|.+|+|||++++.||+.++.+|+.++.
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~ 166 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARLGVPFVELNR 166 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHH
Confidence 3789999999999999999999999999996553
No 331
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.56 E-value=0.0021 Score=65.33 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=28.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|+|.||||+||||+|+.||+.++.+++.++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 45999999999999999999999998777544
No 332
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.50 E-value=0.0091 Score=61.42 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=21.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~ 348 (606)
..|.|+|++|+|||+||+.+++.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCH
T ss_pred EEEEEEcCCcCCcceeeeecccc
Confidence 78999999999999999999977
No 333
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.50 E-value=0.017 Score=57.37 Aligned_cols=98 Identities=20% Similarity=0.246 Sum_probs=54.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
..++|.|+-|+|||++.+.|.... +.-+.... .....+..+ . ..-||.|||++.+.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~--------~~kd~~~~l---~-------~~~iveldEl~~~~k~ 110 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDF--------DDKDFLEQL---Q-------GKWIVELDELDGLSKK 110 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----ccCccccC--------CCcHHHHHH---H-------HhHheeHHHHhhcchh
Confidence 679999999999999999996652 21111111 001111111 1 2249999999988754
Q ss_pred hhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCc
Q 007362 406 AESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFV 465 (606)
Q Consensus 406 r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~ 465 (606)
.++.|-.++-.....+-.. ......--.+..+||.|+|..
T Consensus 111 --------------~~~~lK~~iT~~~~~~R~p------Y~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 111 --------------DVEALKSFITRRTDTYRPP------YGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred --------------hHHHHHHHhcccceeeecC------CcCcceeeceeEEEEeccCCc
Confidence 4455555554332222111 112223345667888888854
No 334
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.47 E-value=0.0051 Score=73.35 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|.+.||+|+||||+|+.||+.++..|+...
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g 66 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTG 66 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHH
Confidence 57999999999999999999999998776443
No 335
>PRK10867 signal recognition particle protein; Provisional
Probab=96.47 E-value=0.56 Score=52.19 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh----CCceeecchh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l----~~~fi~i~~s 359 (606)
+..++|.|++|+||||++-.||..+ +..+..+++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 5789999999999999888888755 3444444443
No 336
>PRK14528 adenylate kinase; Provisional
Probab=96.46 E-value=0.0026 Score=62.30 Aligned_cols=31 Identities=35% Similarity=0.722 Sum_probs=27.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
..|++.||||+||||+|+.|++.++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999998877653
No 337
>PRK06547 hypothetical protein; Provisional
Probab=96.46 E-value=0.0025 Score=61.89 Aligned_cols=32 Identities=44% Similarity=0.544 Sum_probs=28.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|++.|++|+|||++|+.|++.++.+++..+
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 67889999999999999999999988776544
No 338
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.46 E-value=0.0067 Score=58.12 Aligned_cols=37 Identities=35% Similarity=0.543 Sum_probs=31.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~ 362 (606)
..|.|+|.+|+||||||++|.+.| +.+.+.++...+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 579999999999999999999988 6788888887665
No 339
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.45 E-value=0.065 Score=54.95 Aligned_cols=88 Identities=14% Similarity=0.065 Sum_probs=56.9
Q ss_pred CcEEEEcCCC-CHHHHHHHHHHHHhCC---------ceeecchhhh--hhcCCcccchHHHHHHHHHhhhhhhhhcCCCE
Q 007362 326 SNVLLMGPTG-SGKTLLAKTLARHVNV---------PFVIADATTL--TQAGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (606)
Q Consensus 326 ~~vLL~GPpG-TGKT~lAralA~~l~~---------~fi~i~~s~l--~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~I 393 (606)
..+||.|..+ ++|..++..+++.+.. .+..+....- .....++. ..++++.......-..+..-|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~I---dqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISI---EQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccH---HHHHHHHHHHhhCcccCCcEE
Confidence 6799999998 9999999999988733 2222221100 00011222 234444433322222346679
Q ss_pred EEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
++||++|+++.. +.|+||+.||+
T Consensus 93 iII~~ae~mt~~--------------AANALLKtLEE 115 (263)
T PRK06581 93 AIIYSAELMNLN--------------AANSCLKILED 115 (263)
T ss_pred EEEechHHhCHH--------------HHHHHHHhhcC
Confidence 999999999988 99999999995
No 340
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.43 E-value=0.0026 Score=61.24 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=26.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
..|+|.||||+||||+|+.|++.++..++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 468999999999999999999998766553
No 341
>PRK02496 adk adenylate kinase; Provisional
Probab=96.41 E-value=0.0028 Score=61.46 Aligned_cols=30 Identities=33% Similarity=0.739 Sum_probs=26.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
.++|.||||+||||+|+.||+.++.+++..
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776644
No 342
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.36 E-value=0.0092 Score=64.21 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+++.|.||||||.||-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 468999999999999999999887
No 343
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.022 Score=57.45 Aligned_cols=29 Identities=38% Similarity=0.480 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
..|.+.|++|+||||+|+.|+..++...+
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~~~ 37 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVEKV 37 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcCcc
Confidence 56889999999999999999999986533
No 344
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.34 E-value=0.0028 Score=56.64 Aligned_cols=22 Identities=45% Similarity=0.629 Sum_probs=20.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l 349 (606)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 345
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.031 Score=61.15 Aligned_cols=25 Identities=44% Similarity=0.570 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|+||+|+||||++..||..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999765
No 346
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0032 Score=61.00 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=26.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.|+++|.|||||||+|+.|+ .++...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 8888887665
No 347
>PLN02200 adenylate kinase family protein
Probab=96.29 E-value=0.0037 Score=63.69 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=29.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~ 362 (606)
+..|+|.|+||+||||+|+.||+.++..+ +++.++.
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~h--is~gdll 78 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKH--LSAGDLL 78 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeE--EEccHHH
Confidence 36789999999999999999999998655 4554444
No 348
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.28 E-value=0.0036 Score=62.43 Aligned_cols=30 Identities=33% Similarity=0.677 Sum_probs=26.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
.|++.||||+||||+|+.||+.++.+++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999998777654
No 349
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.28 E-value=0.0035 Score=62.32 Aligned_cols=29 Identities=38% Similarity=0.706 Sum_probs=25.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
|+|.||||+||||+|+.||+.++.+++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 79999999999999999999998776643
No 350
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.0038 Score=61.06 Aligned_cols=34 Identities=38% Similarity=0.768 Sum_probs=27.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~ 362 (606)
.|+|.||||+||||+|+.||+.++.+ .++..++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~--hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLP--HLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc--EEcHhHHh
Confidence 48999999999999999999996544 45555444
No 351
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.27 E-value=0.006 Score=60.34 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.-++|.||+|+||||+++++++.+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4589999999999999999888774
No 352
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.26 E-value=0.012 Score=61.26 Aligned_cols=76 Identities=25% Similarity=0.285 Sum_probs=40.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhh--hcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT--QAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKI 402 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~--~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l 402 (606)
|+|+|-||+|||++|+.|++.+ +...+.++...+. ...|.....++.++..+..+-... .....||++|....+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCchH
Confidence 8999999999999999999876 4555555544333 223444444666655554433221 234589999988765
Q ss_pred hh
Q 007362 403 TK 404 (606)
Q Consensus 403 ~~ 404 (606)
-.
T Consensus 83 Kg 84 (270)
T PF08433_consen 83 KG 84 (270)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 353
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.25 E-value=0.01 Score=63.39 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=32.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ 363 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~ 363 (606)
..|+|.|++|+|||||++.|++.++.+++.-.+.++..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~ 200 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVE 200 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHH
Confidence 57999999999999999999999998887665554443
No 354
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.25 E-value=0.01 Score=58.56 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s 359 (606)
..++|+||||+|||++|..++... +...+++++.
T Consensus 13 ~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 13 TITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 789999999999999999888654 4456666654
No 355
>PRK13695 putative NTPase; Provisional
Probab=96.24 E-value=0.072 Score=51.19 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l 349 (606)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999988765
No 356
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.24 E-value=0.1 Score=57.48 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=24.2
Q ss_pred CcEEEEcCCCCHHHHHH--HHHHHHhCCceeecchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLA--KTLARHVNVPFVIADATTLT 362 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lA--ralA~~l~~~fi~i~~s~l~ 362 (606)
.-|++.||.|+||+.|. ++|...-+ .+.|||..+.
T Consensus 18 TFIvV~GPrGSGK~elV~d~~L~~r~~--vL~IDC~~i~ 54 (431)
T PF10443_consen 18 TFIVVQGPRGSGKRELVMDHVLKDRKN--VLVIDCDQIV 54 (431)
T ss_pred eEEEEECCCCCCccHHHHHHHHhCCCC--EEEEEChHhh
Confidence 56999999999999999 55554322 4445554433
No 357
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.22 E-value=0.025 Score=55.95 Aligned_cols=31 Identities=32% Similarity=0.488 Sum_probs=27.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.|.|+|++|+||||+++.+++.++.+++..|
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~D 33 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDAD 33 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeCc
Confidence 5899999999999999999998888887544
No 358
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.19 E-value=0.037 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+..|.|.|++|+|||||++.|++.++
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36799999999999999999999983
No 359
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.19 E-value=0.12 Score=54.37 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=42.5
Q ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHH
Q 007362 266 EICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTL 345 (606)
Q Consensus 266 ~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAral 345 (606)
.+.+.|++..-|.++.++.|.+.+... +. ... ....-++|+|+.|+|||++.+.|
T Consensus 42 ~~~~~L~~~~~~d~~~~~~l~~~lg~~---L~-~~~---------------------~~~~~~~l~G~g~nGKStl~~~l 96 (304)
T TIGR01613 42 TWNGFLLETFGGDNELIEYLQRVIGYS---LT-GNY---------------------TEQKLFFLYGNGGNGKSTFQNLL 96 (304)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHhHH---hc-CCC---------------------CceEEEEEECCCCCcHHHHHHHH
Confidence 356677775555556677777766311 10 000 11367999999999999999999
Q ss_pred HHHhCCcee
Q 007362 346 ARHVNVPFV 354 (606)
Q Consensus 346 A~~l~~~fi 354 (606)
...+|....
T Consensus 97 ~~l~G~~~~ 105 (304)
T TIGR01613 97 SNLLGDYAT 105 (304)
T ss_pred HHHhChhhc
Confidence 999876543
No 360
>PTZ00301 uridine kinase; Provisional
Probab=96.19 E-value=0.009 Score=59.95 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.-|.+.|+||+||||+|+.|++.++
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHH
Confidence 4589999999999999999998763
No 361
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.023 Score=67.47 Aligned_cols=76 Identities=26% Similarity=0.381 Sum_probs=51.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh----------CCceeecchhhhh-hcCCcccchHHHHHHHHHhhhhhhhhcCCCEE
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV----------NVPFVIADATTLT-QAGYVGEDVESILYKLLAQAEFNVEAAQQGMV 394 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l----------~~~fi~i~~s~l~-~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~IL 394 (606)
.|-+|.|.||+|||.+++-+|+.. +..++.++...+. .+.+.|+- +..+..+...+.. ...+-||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~-E~rlk~l~k~v~~---~~~gvIL 284 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF-EERLKELLKEVES---GGGGVIL 284 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH-HHHHHHHHHHHhc---CCCcEEE
Confidence 688999999999999999999865 1244555555433 12333333 5566666655442 2356799
Q ss_pred EEcccchhhhh
Q 007362 395 YIDEVDKITKK 405 (606)
Q Consensus 395 fIDEiD~l~~~ 405 (606)
||||+|-+...
T Consensus 285 figelh~lvg~ 295 (898)
T KOG1051|consen 285 FLGELHWLVGS 295 (898)
T ss_pred EecceeeeecC
Confidence 99999987765
No 362
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.19 E-value=0.0094 Score=59.64 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=27.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s 359 (606)
..++|+|+||+|||++|..+|... +...+++++.
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 678999999999999999988654 5555666554
No 363
>PRK06696 uridine kinase; Validated
Probab=96.18 E-value=0.0088 Score=60.11 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=30.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~ 362 (606)
..|.+.|++|+||||+|+.|++.+ +.+++.+.+.++.
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 679999999999999999999998 5566666655543
No 364
>PRK14527 adenylate kinase; Provisional
Probab=96.16 E-value=0.0046 Score=60.46 Aligned_cols=31 Identities=29% Similarity=0.529 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
..|+|.||||+||||+|+.||+.++...+..
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 6799999999999999999999998766543
No 365
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.15 E-value=0.019 Score=67.74 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=50.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---C--Cceeecchh-----hhhhcCCcccchHHHHHHHHHhhhhh-----hh-hc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---N--VPFVIADAT-----TLTQAGYVGEDVESILYKLLAQAEFN-----VE-AA 389 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~--~~fi~i~~s-----~l~~sg~vG~~~~~~l~~lf~~a~~~-----l~-~a 389 (606)
..++|.|+||||||++++++.+.+ + .+++.+..+ .+.+ ..|.. ...+..++...... .. ..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e--~~g~~-a~Tih~lL~~~~~~~~~~~~~~~~ 415 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE--VTGLT-ASTIHRLLGYGPDTFRHNHLEDPI 415 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH--hcCCc-cccHHHHhhccCCccchhhhhccc
Confidence 579999999999999999998766 2 233322211 1111 11211 12222233211100 00 12
Q ss_pred CCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 390 ~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
...+|+|||+.++... ....|++.+.
T Consensus 416 ~~~llIvDEaSMvd~~--------------~~~~Ll~~~~ 441 (720)
T TIGR01448 416 DCDLLIVDESSMMDTW--------------LALSLLAALP 441 (720)
T ss_pred cCCEEEEeccccCCHH--------------HHHHHHHhCC
Confidence 4579999999998776 7777777654
No 366
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=96.09 E-value=0.0097 Score=70.84 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=56.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccch------HHHHHHHHHh--hhhhhhhcCCCEEEEcc
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDV------ESILYKLLAQ--AEFNVEAAQQGMVYIDE 398 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~------~~~l~~lf~~--a~~~l~~a~~~ILfIDE 398 (606)
.++++||||+|||+.+.++|+.++..+++.|+++.. +++..... ...+...+.. .+.. ......||++||
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~R-Sk~~l~~~~~~~~~s~si~~~~~~~~~~~~-~~~~~~vil~de 436 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVR-SKKELLNKLGNATSSHSIKGSKKKKGNRQS-LNSDHFLILMDE 436 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccc-cccHHHhhhhccccccchhhhhcccccccc-cccceeEEEEec
Confidence 479999999999999999999999999999999766 32211110 0111111100 0000 012345999999
Q ss_pred cchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 399 VDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 399 iD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
+|-+.... +..+..|-.+..
T Consensus 437 vD~~~~~d-----------Rg~v~~l~~l~~ 456 (871)
T KOG1968|consen 437 VDGMFGED-----------RGGVSKLSSLCK 456 (871)
T ss_pred cccccchh-----------hhhHHHHHHHHH
Confidence 99776531 226666666654
No 367
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.09 E-value=0.052 Score=59.13 Aligned_cols=25 Identities=44% Similarity=0.574 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...++|.||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999754
No 368
>PRK04040 adenylate kinase; Provisional
Probab=96.09 E-value=0.0053 Score=60.45 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=25.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh--CCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV--NVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l--~~~fi 354 (606)
..|+|+|+||+||||+++.+++.+ +..++
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 569999999999999999999999 55554
No 369
>PRK04182 cytidylate kinase; Provisional
Probab=96.07 E-value=0.0052 Score=58.59 Aligned_cols=29 Identities=38% Similarity=0.603 Sum_probs=26.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
.|+|.|++|+||||+|+.||+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48999999999999999999999988875
No 370
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.06 E-value=0.99 Score=50.20 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh----CCceeecchh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV----NVPFVIADAT 359 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l----~~~fi~i~~s 359 (606)
+..++|.|++|+||||+|..||..+ +.....+++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 5789999999999999998888764 3444444443
No 371
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.05 E-value=0.015 Score=63.38 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=26.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~ 358 (606)
..++|+|+||+|||+++..+|..+ +...++++.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~ 118 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSG 118 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 679999999999999999988765 245555544
No 372
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.04 E-value=0.024 Score=56.22 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||+|+||||.+-.||..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHH
Confidence 579999999999999988888765
No 373
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.04 E-value=0.0054 Score=58.10 Aligned_cols=30 Identities=40% Similarity=0.648 Sum_probs=27.1
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
.|+|.|++|+|||++|+.|++.++.+++..
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 489999999999999999999999887654
No 374
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.97 E-value=0.0057 Score=63.83 Aligned_cols=32 Identities=31% Similarity=0.372 Sum_probs=26.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-CCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-~~~fi~i~ 357 (606)
..|+|.|+|||||||+|+.|++.+ +..++..+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D 35 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRD 35 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEecc
Confidence 468999999999999999999998 66555443
No 375
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.97 E-value=0.031 Score=58.22 Aligned_cols=70 Identities=24% Similarity=0.324 Sum_probs=47.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
..|+||.|..|+||++++|..|...+..++.+..+. +|--.+....++.++..+.. ..++.+++|+|-+-
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~----~y~~~~f~~dLk~~~~~ag~---~~~~~vfll~d~qi 100 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK----GYSIKDFKEDLKKALQKAGI---KGKPTVFLLTDSQI 100 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST----TTHHHHHHHHHHHHHHHHHC---S-S-EEEEEECCCS
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC----CcCHHHHHHHHHHHHHHHhc---cCCCeEEEecCccc
Confidence 389999999999999999999999999998887653 22222223344444444332 23567888888763
No 376
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.95 E-value=0.018 Score=58.17 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
...++++|+||||||+++..++..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 378999999999999999998654
No 377
>PF13245 AAA_19: Part of AAA domain
Probab=95.94 E-value=0.009 Score=50.27 Aligned_cols=24 Identities=38% Similarity=0.623 Sum_probs=18.7
Q ss_pred CcEEEEcCCCCHHH-HHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKT-LLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT-~lAralA~~l 349 (606)
..+++.|||||||| ++++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44666999999999 6667777666
No 378
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.94 E-value=0.014 Score=62.26 Aligned_cols=80 Identities=24% Similarity=0.262 Sum_probs=44.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcC---CcccchHH-------HHHHHHHhhhhhhhhcCCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGEDVES-------ILYKLLAQAEFNVEAAQQG 392 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg---~vG~~~~~-------~l~~lf~~a~~~l~~a~~~ 392 (606)
..++|+||||||||+||..++... +...+++++....+.. -.|.+... ...+.+......+......
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~ 135 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVD 135 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCc
Confidence 689999999999999988766544 4556666554321100 00111000 0111122222223334568
Q ss_pred EEEEcccchhhhh
Q 007362 393 MVYIDEVDKITKK 405 (606)
Q Consensus 393 ILfIDEiD~l~~~ 405 (606)
+||||-+..+.+.
T Consensus 136 lIVIDSv~al~~~ 148 (321)
T TIGR02012 136 IIVVDSVAALVPK 148 (321)
T ss_pred EEEEcchhhhccc
Confidence 9999999988753
No 379
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.93 E-value=0.017 Score=64.35 Aligned_cols=34 Identities=26% Similarity=0.324 Sum_probs=27.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s 359 (606)
..++|+|+||+|||+++..++... +...++++..
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 679999999999999999988765 4566666554
No 380
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.93 E-value=0.029 Score=55.27 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s 359 (606)
+..+.|.|++|+||||+|+.|++.+ +...+.++..
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 3689999999999999999999987 3344555543
No 381
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.0075 Score=57.57 Aligned_cols=34 Identities=32% Similarity=0.581 Sum_probs=30.2
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.+..+++.|++|+||||++++|+++++.+|+.-|
T Consensus 11 ~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgD 44 (191)
T KOG3354|consen 11 FKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGD 44 (191)
T ss_pred CceeEEEEecCCCChhhHHHHHHHHhCCcccccc
Confidence 3568999999999999999999999999987544
No 382
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.92 E-value=0.0058 Score=57.36 Aligned_cols=31 Identities=35% Similarity=0.540 Sum_probs=25.0
Q ss_pred EEcCCCCHHHHHHHHHHHHhCCceeecchhhhh
Q 007362 330 LMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (606)
Q Consensus 330 L~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~ 362 (606)
|.||||+||||+|+.||+.++..+ +++.++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHH
Confidence 689999999999999999997654 4555444
No 383
>PLN02674 adenylate kinase
Probab=95.91 E-value=0.0073 Score=61.99 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=26.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
..|+|.||||+||+|+|+.||+.++..++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 57999999999999999999999986665
No 384
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.89 E-value=0.018 Score=62.33 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+.++++.|+.|||||++.++|.+.+.
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 37899999999999999999998874
No 385
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.89 E-value=0.044 Score=57.34 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.||+|+||||++..||..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 386
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.89 E-value=0.015 Score=58.90 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=44.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC--------CceeecchhhhhhcCCcccchHHH--HHHHHHhhh------hhhhhc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN--------VPFVIADATTLTQAGYVGEDVESI--LYKLLAQAE------FNVEAA 389 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~--------~~fi~i~~s~l~~sg~vG~~~~~~--l~~lf~~a~------~~l~~a 389 (606)
.+.|+.|||++||||+.|-||+.+. ..+..+|...-......|...-.. -.++++..+ ..+...
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 7899999999999999999998872 234455544333223333221000 001111100 112334
Q ss_pred CCCEEEEcccchh
Q 007362 390 QQGMVYIDEVDKI 402 (606)
Q Consensus 390 ~~~ILfIDEiD~l 402 (606)
.+-||++|||...
T Consensus 218 ~PEViIvDEIGt~ 230 (308)
T COG3854 218 SPEVIIVDEIGTE 230 (308)
T ss_pred CCcEEEEeccccH
Confidence 6789999999853
No 387
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.88 E-value=0.044 Score=56.51 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=21.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.-++|.||+||||||+.|.|-+.+
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 568999999999999999999876
No 388
>PHA01747 putative ATP-dependent protease
Probab=95.86 E-value=0.028 Score=60.59 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=50.6
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhh-hhhhh-hcCCCEEEEcccch
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQA-EFNVE-AAQQGMVYIDEVDK 401 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a-~~~l~-~a~~~ILfIDEiD~ 401 (606)
...|++=.||.|||||++-+-+.+..+.-+ +.... .+..+|-.. ...+. -..--+|+||||..
T Consensus 189 ~NyNliELgPRGTGKS~~f~eis~fsp~~i---SGG~~------------TvA~LFyN~~t~~~GLVg~~D~VaFDEVa~ 253 (425)
T PHA01747 189 RPVHIIELSNRGTGKTTTFVILQELFNFRY---YTEPP------------TYANLVYDAKTNALGLVFLSNGLIFDEIQT 253 (425)
T ss_pred CCeeEEEecCCCCChhhHHHHhhhcCCcee---eCCCC------------chHHheEecCCCceeEEeeccEEEEEcccc
Confidence 358899999999999999998876443222 11111 111222111 11100 01234899999998
Q ss_pred hhhhhhccccccCcchhHHHHHHHHHHhceeee
Q 007362 402 ITKKAESLNISRDVSGEGVQQALLKMLEGTIVN 434 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~ 434 (606)
+..+. ..++.+.|...|+....+
T Consensus 254 i~f~~----------~kdiv~IMKdYMesG~Fs 276 (425)
T PHA01747 254 WKDSN----------MRAINSTLSTGMENCVWT 276 (425)
T ss_pred ccCCC----------HHHHHHHHHHHhhcceee
Confidence 76541 123888889999954443
No 389
>PLN02199 shikimate kinase
Probab=95.86 E-value=0.0081 Score=63.19 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=30.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecch
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADA 358 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~ 358 (606)
.+|+|.|.+|+|||++++.||+.++.+|+..|.
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~ 135 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDT 135 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHH
Confidence 789999999999999999999999999986664
No 390
>PRK14526 adenylate kinase; Provisional
Probab=95.85 E-value=0.0076 Score=60.49 Aligned_cols=29 Identities=34% Similarity=0.643 Sum_probs=25.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
.++|.||||+||||+|+.||+.++.+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48999999999999999999998766543
No 391
>PRK01184 hypothetical protein; Provisional
Probab=95.83 E-value=0.0075 Score=58.37 Aligned_cols=30 Identities=33% Similarity=0.596 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
..|+|.|+||+||||+++ +++.++.+++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 358999999999999998 688888877654
No 392
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.79 E-value=0.031 Score=52.63 Aligned_cols=24 Identities=42% Similarity=0.581 Sum_probs=19.0
Q ss_pred CcEEEEcCCCCHHHH-HHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTL-LAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~-lAralA~~l 349 (606)
.++++.||+|||||+ ++..+.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555554
No 393
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.79 E-value=0.0084 Score=49.16 Aligned_cols=22 Identities=41% Similarity=0.708 Sum_probs=20.7
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l 349 (606)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6889999999999999999986
No 394
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.031 Score=54.60 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=32.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLT 362 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~ 362 (606)
..|-|+|.+|+||||+|.+|.+.| +...+.+|...+.
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 679999999999999999999988 6777778877554
No 395
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.77 E-value=0.014 Score=63.24 Aligned_cols=104 Identities=18% Similarity=0.274 Sum_probs=56.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC-----ceee--cc-----hhhhhhc--CCcc-----cchHHHH---HHHHHhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV-----PFVI--AD-----ATTLTQA--GYVG-----EDVESIL---YKLLAQAE 383 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~-----~fi~--i~-----~s~l~~s--g~vG-----~~~~~~l---~~lf~~a~ 383 (606)
...+|.||||||||+|++.+++.+.. .++. +. ..++... +.+. ......+ ..+...+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 56899999999999999999987722 1121 11 1111110 0011 1111211 12334444
Q ss_pred hhhhhcCCCEEEEcccchhhhhhhcccc--ccC---cchhHHHHHHHHHHh
Q 007362 384 FNVEAAQQGMVYIDEVDKITKKAESLNI--SRD---VSGEGVQQALLKMLE 429 (606)
Q Consensus 384 ~~l~~a~~~ILfIDEiD~l~~~r~~~~~--~~~---~s~~~vq~~LL~~Le 429 (606)
......+.-+|++||+.++....+.... +.- .....+...+-++++
T Consensus 214 ~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s~G~~~s~~~~~~rl~~ 264 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLSGGVDARALQRPKRLFG 264 (380)
T ss_pred HHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCCCCcChHHHhhhHHHHH
Confidence 4445567789999999998765332211 111 112346666666666
No 396
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.76 E-value=0.023 Score=60.01 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
|..|++.|++|+|||++|..||+.++.+.
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 46799999999999999999999998774
No 397
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.73 E-value=0.037 Score=65.51 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=49.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh----h-hhh-cCCcccchHHHHHHHHHhhhhhhhhcCCCEEEE
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT----T-LTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGMVYI 396 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s----~-l~~-sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfI 396 (606)
..++|.|+||||||++++++...+ +..++.+..+ . +.+ .+.........+.. +. ..........+|+|
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~-~~--~~~~~~~~~~llIv 445 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYA-WA--NGRDLLSDKDVLVI 445 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhh-hc--cCcccCCCCcEEEE
Confidence 568999999999999999988765 4444433222 1 111 12211221111111 01 10001125579999
Q ss_pred cccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 397 DEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 397 DEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
||+-++... ....|+....
T Consensus 446 DEasMv~~~--------------~~~~Ll~~~~ 464 (744)
T TIGR02768 446 DEAGMVGSR--------------QMARVLKEAE 464 (744)
T ss_pred ECcccCCHH--------------HHHHHHHHHH
Confidence 999988766 6666776543
No 398
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.73 E-value=0.031 Score=53.62 Aligned_cols=34 Identities=32% Similarity=0.569 Sum_probs=26.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s 359 (606)
..|+|.|+||+||||+|+.|+..+ +..+..++..
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 579999999999999999999987 3334444443
No 399
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.72 E-value=0.0084 Score=58.45 Aligned_cols=30 Identities=33% Similarity=0.600 Sum_probs=25.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
..++|.||+|+|||||++.|+..++.+|+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 468999999999999999999988665543
No 400
>PRK08233 hypothetical protein; Provisional
Probab=95.69 E-value=0.0096 Score=56.96 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=25.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC-Cceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN-VPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~-~~fi~i~ 357 (606)
..|.+.|+||+||||+|+.|+..++ ...+..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 5688999999999999999999985 3333333
No 401
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.68 E-value=0.022 Score=53.14 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
..++|.|+.|+|||+++|.+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 679999999999999999999999753
No 402
>PRK14529 adenylate kinase; Provisional
Probab=95.64 E-value=0.0093 Score=60.43 Aligned_cols=28 Identities=29% Similarity=0.647 Sum_probs=25.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
.|+|.||||+||||+|+.||+.++.+++
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4899999999999999999999987765
No 403
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.62 E-value=0.019 Score=55.66 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.6
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~ 360 (606)
.+++.|+||+|||++|..++..++.+.+++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999877766665543
No 404
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.61 E-value=0.027 Score=61.90 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
..|+|.|++|||||||+++||+.++...+.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999998876554
No 405
>PF13479 AAA_24: AAA domain
Probab=95.61 E-value=0.017 Score=57.75 Aligned_cols=20 Identities=55% Similarity=0.904 Sum_probs=18.7
Q ss_pred CcEEEEcCCCCHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTL 345 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAral 345 (606)
..++|||+||+|||++|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 57999999999999999987
No 406
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.59 E-value=0.032 Score=67.61 Aligned_cols=88 Identities=14% Similarity=0.084 Sum_probs=49.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhh----hhhcCCcccchHHHHHHHHHhh-hhhhhhcCCCEEEEc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATT----LTQAGYVGEDVESILYKLLAQA-EFNVEAAQQGMVYID 397 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~----l~~sg~vG~~~~~~l~~lf~~a-~~~l~~a~~~ILfID 397 (606)
..++|.|.+||||||+.+++.+.+ +..++-+-.+. .+. .-.|.. ...+..++... ..........|||||
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~-e~tGi~-a~TI~sll~~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLE-GGSGIA-SRTIASLEHGWGQGRDLLTSRDVLVID 440 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHh-hccCcc-hhhHHHHHhhhcccccccccCcEEEEE
Confidence 467899999999999998877654 44444332221 111 111222 22232322110 000012245699999
Q ss_pred ccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 398 EVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 398 EiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
|+-++... ....|++..+
T Consensus 441 EASMv~~~--------------~m~~LL~~a~ 458 (988)
T PRK13889 441 EAGMVGTR--------------QLERVLSHAA 458 (988)
T ss_pred CcccCCHH--------------HHHHHHHhhh
Confidence 99988766 6777777654
No 407
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.58 E-value=0.033 Score=54.34 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=18.6
Q ss_pred EEEEcCCCCHHHHHHHHHHH
Q 007362 328 VLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~ 347 (606)
++|+||.|.|||++.|.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999983
No 408
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.55 E-value=0.059 Score=54.67 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCcEEEEcCCCCHHHHHHH-HHHHHh--CCceeecc
Q 007362 325 KSNVLLMGPTGSGKTLLAK-TLARHV--NVPFVIAD 357 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAr-alA~~l--~~~fi~i~ 357 (606)
...++|.|+||||||++|. .+++.+ +...++++
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3789999999999999974 455443 34444444
No 409
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.55 E-value=0.041 Score=53.32 Aligned_cols=36 Identities=25% Similarity=0.461 Sum_probs=28.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l 361 (606)
..++|.|++|+|||++|+.|+..+ +...+.++...+
T Consensus 19 ~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 679999999999999999999987 334455555443
No 410
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.55 E-value=0.0086 Score=59.71 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l 349 (606)
+++.|+||+|||++.+.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999884
No 411
>PLN02459 probable adenylate kinase
Probab=95.52 E-value=0.013 Score=60.80 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=26.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVI 355 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~ 355 (606)
.+++|.||||+||||+|+.||+.++..++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is 59 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIA 59 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 468999999999999999999999876653
No 412
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.51 E-value=0.05 Score=62.48 Aligned_cols=36 Identities=28% Similarity=0.491 Sum_probs=28.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC----ceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV----PFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~----~fi~i~~s~l 361 (606)
..|+|+|.+|+||||+|+.||..++. ++..++...+
T Consensus 393 ~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 393 FTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred eEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 68999999999999999999999864 3344454433
No 413
>PLN02165 adenylate isopentenyltransferase
Probab=95.48 E-value=0.013 Score=62.67 Aligned_cols=34 Identities=35% Similarity=0.506 Sum_probs=30.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
..++|.||+|+|||+||..||+.++..++..|.-
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 5799999999999999999999998877766654
No 414
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.47 E-value=0.1 Score=54.64 Aligned_cols=104 Identities=21% Similarity=0.176 Sum_probs=66.7
Q ss_pred CChHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHH
Q 007362 262 PTPKEICKGLDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLL 341 (606)
Q Consensus 262 ~~~~~l~~~L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~l 341 (606)
-+.+++.+.+.+.+.|.....-.|..++...+.++. ......+-|+|.+++|||++
T Consensus 154 Gtle~W~~~v~~~~~~n~~~~~~l~~afa~pLL~~l------------------------~~~~~~~hl~G~Ss~GKTt~ 209 (286)
T PF06048_consen 154 GTLEEWQEMVAALAKGNPRLMLALCAAFAAPLLSLL------------------------GVEGFGFHLYGQSSSGKTTA 209 (286)
T ss_pred cCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHh------------------------CCCceEEEEEeCCCCCHHHH
Confidence 367777787777778887777777666654444321 12236799999999999999
Q ss_pred HHHHHHHhCCceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccchhhhh
Q 007362 342 AKTLARHVNVPFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDKITKK 405 (606)
Q Consensus 342 AralA~~l~~~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~l~~~ 405 (606)
+++.+...+.|- .+.. .|.+.. . .+...+. ......|+|||+....+.
T Consensus 210 ~~~a~Sv~G~p~------~l~~-sw~~T~-n----~le~~a~----~~nd~~l~lDE~~~~~~~ 257 (286)
T PF06048_consen 210 LQLAASVWGNPD------GLIR-SWNSTD-N----GLERTAA----AHNDLPLVLDELSQADPK 257 (286)
T ss_pred HHHhhhhCcCch------hhhh-cchhhH-H----HHHHHHH----HcCCcceEehhccccchh
Confidence 999998887766 2221 132221 1 1111111 225679999999876544
No 415
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.47 E-value=0.12 Score=58.70 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...++|.||+|+||||++..||..+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999988654
No 416
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.42 E-value=0.23 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.||+|+||||++..||..+
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4789999999999999999999877
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.39 E-value=0.044 Score=57.15 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=23.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.+++|.||+|+||||+.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998873
No 418
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.39 E-value=0.042 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+||||++++|+..+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3678999999999999999999876
No 419
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.38 E-value=0.075 Score=51.87 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=31.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ 363 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~ 363 (606)
..|+|.|++-+|||++|++|...+..+|+.+....+..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~ 39 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVD 39 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHh
Confidence 45999999999999999999999999998887776664
No 420
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.35 E-value=0.026 Score=60.62 Aligned_cols=54 Identities=31% Similarity=0.390 Sum_probs=40.1
Q ss_pred hhhhcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCChhhHhhhcccccccccCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 271 LDKFVIGQEKAKKVLSVAVYNHYKRIYHANLKKGSGAEPKTAAAVDNDDNVELEKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 271 L~~~VvGqe~ak~~L~~av~~~~~rl~~~~~~~g~g~s~~~~~~~d~~~~v~~~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+++.+.|.+++++.|...+.. +.... ...+..++|.||+|+|||++++.|.+.+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~-------AA~g~------------------~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKS-------AAQGL------------------EERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccccCcHHHHHHHHHHHHH-------HHhcc------------------CccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 444589999999999775531 11111 1224789999999999999999999887
No 421
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.33 E-value=0.018 Score=57.77 Aligned_cols=37 Identities=38% Similarity=0.565 Sum_probs=28.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhhh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLTQ 363 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~~ 363 (606)
.++|+||+|||||.+|-.+|+..+.|++..|.-.+..
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~ 39 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYP 39 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-G
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccc
Confidence 5899999999999999999999999999888765543
No 422
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.32 E-value=0.053 Score=51.90 Aligned_cols=33 Identities=33% Similarity=0.415 Sum_probs=25.3
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s 359 (606)
.++|.|+||+|||+++..+|..+ +...+.+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999999876 4444444433
No 423
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.31 E-value=0.015 Score=56.01 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=23.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+..|+|.|++|+||||+|+.|++.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999885
No 424
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.29 E-value=0.023 Score=61.10 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++|.||+|+||||+.+++.+.+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6799999999999999999998764
No 425
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=95.28 E-value=0.08 Score=61.30 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
....+|.|+|||||||+++.+...+
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3679999999999999987766544
No 426
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.26 E-value=0.084 Score=52.67 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||.|+|||++.+.++...
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999998543
No 427
>PRK13975 thymidylate kinase; Provisional
Probab=95.25 E-value=0.026 Score=54.99 Aligned_cols=27 Identities=41% Similarity=0.466 Sum_probs=24.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
.-|+|.|++|+||||+++.|++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 469999999999999999999999753
No 428
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.21 E-value=0.014 Score=57.21 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=15.8
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l 349 (606)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999996555544443
No 429
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.093 Score=60.73 Aligned_cols=24 Identities=46% Similarity=0.703 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|.||+|.||||+|..|-+..
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999998876
No 430
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.19 E-value=0.049 Score=56.80 Aligned_cols=25 Identities=32% Similarity=0.499 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..++|.||+|+||||++..||..+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l 96 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL 96 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999999776
No 431
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.19 E-value=0.038 Score=55.38 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
+.++|.||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999984
No 432
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.18 E-value=0.017 Score=61.25 Aligned_cols=35 Identities=40% Similarity=0.603 Sum_probs=30.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~ 360 (606)
..|++.||+|+|||++|..||+.++..++..|.-.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q 39 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ 39 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc
Confidence 57999999999999999999999998887776643
No 433
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.15 E-value=0.018 Score=59.67 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++|.||+|+||||+.+++...+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 5699999999999999999877663
No 434
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.15 E-value=0.12 Score=51.61 Aligned_cols=22 Identities=55% Similarity=0.711 Sum_probs=19.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA 346 (606)
...+|+.||||||||++|..++
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l 40 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFL 40 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHH
Confidence 3889999999999999998765
No 435
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.14 E-value=0.41 Score=51.25 Aligned_cols=29 Identities=41% Similarity=0.768 Sum_probs=21.2
Q ss_pred CcEEEEcCCCCHHHHHHHH-HHH--HhCCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKT-LAR--HVNVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAra-lA~--~l~~~fi 354 (606)
..|++.||.|+|||++.-. ++. ..+-.|+
T Consensus 50 nsviiigprgsgkT~li~~~Ls~~q~~~E~~l 81 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSDIQENGENFL 81 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhhHHhcCCeEE
Confidence 7899999999999987543 443 4555554
No 436
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.11 E-value=0.02 Score=56.81 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=25.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCce
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPF 353 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~f 353 (606)
..+++.|.||+||||+|+.||+.++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 5799999999999999999999987654
No 437
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.25 Score=54.30 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+..|+|.||+|+||||++..||..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 4789999999999999999999776
No 438
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.09 E-value=0.017 Score=55.59 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.5
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
.++|.||+|+||||+++.|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4899999999999999999998753
No 439
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.09 E-value=0.048 Score=52.86 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=26.5
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
+|+.|++|+|||++|..++...+.+.+++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEcc
Confidence 68999999999999999998766666666544
No 440
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.05 E-value=0.023 Score=55.31 Aligned_cols=29 Identities=34% Similarity=0.670 Sum_probs=25.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
..++|.|++|+||||++++|+..++..++
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i 32 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFI 32 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEE
Confidence 56899999999999999999999876443
No 441
>PRK09354 recA recombinase A; Provisional
Probab=95.03 E-value=0.06 Score=58.06 Aligned_cols=80 Identities=24% Similarity=0.298 Sum_probs=44.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcCC---cccchHHH-------HHHHHHhhhhhhhhcCC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAGY---VGEDVESI-------LYKLLAQAEFNVEAAQQ 391 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg~---vG~~~~~~-------l~~lf~~a~~~l~~a~~ 391 (606)
...++|+||+|||||+||-.++... +...+++++..-.+..| .|.+..+. ..+.+......+.....
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 3678999999999999998766433 55556665543111100 01110000 11112222222333456
Q ss_pred CEEEEcccchhhh
Q 007362 392 GMVYIDEVDKITK 404 (606)
Q Consensus 392 ~ILfIDEiD~l~~ 404 (606)
.+|+||-+-.+.+
T Consensus 140 ~lIVIDSvaaL~~ 152 (349)
T PRK09354 140 DLIVVDSVAALVP 152 (349)
T ss_pred CEEEEeChhhhcc
Confidence 8999999998875
No 442
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.99 E-value=0.34 Score=55.15 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=28.1
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.+.-|+|+|+||+||||+|+.++...+...+..|
T Consensus 368 ~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D 401 (526)
T TIGR01663 368 PCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNAD 401 (526)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHcCCeEECcH
Confidence 3578999999999999999999998776555444
No 443
>PRK13808 adenylate kinase; Provisional
Probab=94.98 E-value=0.021 Score=61.20 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=26.4
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeec
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIA 356 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i 356 (606)
.|+|+||||+||||+|+.|++.++.+++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 389999999999999999999998766543
No 444
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.95 E-value=0.095 Score=60.41 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
....+|.|+|||||||++..|...+
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l 184 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLAL 184 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 3679999999999999888776554
No 445
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.94 E-value=0.053 Score=53.83 Aligned_cols=24 Identities=29% Similarity=0.538 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|.||+|+||||+.|.|+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999998543
No 446
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.88 E-value=0.023 Score=56.00 Aligned_cols=30 Identities=47% Similarity=0.489 Sum_probs=24.5
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh-CCceeecc
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV-NVPFVIAD 357 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l-~~~fi~i~ 357 (606)
|.+.|+||+||||+|+.|++.+ +..++.+|
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 6889999999999999999998 44444433
No 447
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.87 E-value=0.025 Score=54.90 Aligned_cols=29 Identities=41% Similarity=0.630 Sum_probs=25.1
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
|.|+|++|+||||+++.+++ ++.+++..|
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 78999999999999999999 777765544
No 448
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.84 E-value=0.022 Score=55.90 Aligned_cols=24 Identities=54% Similarity=0.768 Sum_probs=22.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
|.+.||+|+||||+|+.|+..++.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 789999999999999999999963
No 449
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.80 E-value=0.041 Score=54.29 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLA 346 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA 346 (606)
+.++|.||.|+||||+.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 359999999999999999998
No 450
>PRK12338 hypothetical protein; Provisional
Probab=94.77 E-value=0.024 Score=60.31 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
+..|++.|+||+||||+|+.||+.++...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 367999999999999999999999987654
No 451
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.77 E-value=0.13 Score=55.03 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=44.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchhhhhhcC---CcccchHHH-------HHHHHHhhhhhhhhcCCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADATTLTQAG---YVGEDVESI-------LYKLLAQAEFNVEAAQQG 392 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s~l~~sg---~vG~~~~~~-------l~~lf~~a~~~l~~a~~~ 392 (606)
..+.++||||+|||+||-.++... +...+++++..-.+.. ..|.+.... ..+++......+......
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 678999999999999998877543 5566666654211110 011110000 011122222223334568
Q ss_pred EEEEcccchhhh
Q 007362 393 MVYIDEVDKITK 404 (606)
Q Consensus 393 ILfIDEiD~l~~ 404 (606)
+||||-+-.+.+
T Consensus 136 lIVIDSvaal~~ 147 (325)
T cd00983 136 LIVVDSVAALVP 147 (325)
T ss_pred EEEEcchHhhcc
Confidence 999999998875
No 452
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.76 E-value=0.082 Score=51.61 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||.|+|||||.++|+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3678899999999999999999876
No 453
>PRK00023 cmk cytidylate kinase; Provisional
Probab=94.75 E-value=0.026 Score=57.11 Aligned_cols=32 Identities=31% Similarity=0.524 Sum_probs=28.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
..|.|.|++|+|||++|+.||+.++.+++..+
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~~ 36 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDTG 36 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCc
Confidence 57999999999999999999999998876433
No 454
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.74 E-value=0.026 Score=64.43 Aligned_cols=34 Identities=32% Similarity=0.600 Sum_probs=31.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
..|+|.|.+|+||||+++.||+.++.+|+.+|..
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ 40 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE 40 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH
Confidence 5799999999999999999999999999987753
No 455
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.74 E-value=0.085 Score=54.70 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+-|.|++||||||++|+|.+...
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcC
Confidence 7889999999999999999998774
No 456
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.74 E-value=0.11 Score=49.00 Aligned_cols=25 Identities=40% Similarity=0.663 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.|++|+|||++.++|+..+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6789999999999999999998763
No 457
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=94.70 E-value=0.026 Score=63.58 Aligned_cols=33 Identities=27% Similarity=0.574 Sum_probs=29.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHhCCceeecchh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
+|+|.|++|+||||+++.+|+.++.+|+..|..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~ 34 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEE 34 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence 589999999999999999999999999876643
No 458
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=94.69 E-value=0.091 Score=57.11 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=61.2
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHhCCceeec-chhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCCCEEEEcccch
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHVNVPFVIA-DATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQGMVYIDEVDK 401 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l~~~fi~i-~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~~ILfIDEiD~ 401 (606)
+.+.-++|+|||.||||+++-.|-+.++..+++. +..+ .-|. .....-.|-+||++-.
T Consensus 260 PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns~S---hFWL------------------qPL~d~Ki~llDDAT~ 318 (432)
T PF00519_consen 260 PKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFWL------------------QPLADAKIALLDDATY 318 (432)
T ss_dssp TTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGTTS---CGGG------------------GGGCT-SSEEEEEE-H
T ss_pred CcccEEEEECCCCCchhHHHHHHHHHhCCEEEEecCCCC---cccc------------------cchhcCcEEEEcCCcc
Confidence 3457899999999999999999999998776642 2111 0010 0112345899999886
Q ss_pred hhhhhhccccccCcchhHHH-HHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCC
Q 007362 402 ITKKAESLNISRDVSGEGVQ-QALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAF 464 (606)
Q Consensus 402 l~~~r~~~~~~~~~s~~~vq-~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~ 464 (606)
-+=. .. ..|..+|||..+.++.+.+ -.+..+...+++|+|.
T Consensus 319 ~cW~--------------Y~D~ylRNaLDGN~vsiD~KHk--------ap~Qik~PPLlITsN~ 360 (432)
T PF00519_consen 319 PCWD--------------YIDTYLRNALDGNPVSIDCKHK--------APVQIKCPPLLITSNI 360 (432)
T ss_dssp HHHH--------------HHHHHTHHHHCTSEEEEEESSS--------EEEEEE---EEEEESS
T ss_pred cHHH--------------HHHHHHHhccCCCeeeeeccCC--------CceEeecCceEEecCC
Confidence 5444 33 3367889999988866532 2344455566667774
No 459
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.68 E-value=0.074 Score=53.29 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHH
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARH 348 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~ 348 (606)
...+.|+||||+|||++|..++..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 377899999999999999998754
No 460
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.64 E-value=0.23 Score=53.41 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.2
Q ss_pred cccCCcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 322 ELEKSNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 322 ~~~~~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++.++.|||+-|.|||+|.-..-+.+-
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCC
Confidence 34569999999999999999999888773
No 461
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.62 E-value=0.028 Score=52.32 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.1
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCc
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVP 352 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~ 352 (606)
++|.||+|+|||++++.|++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 7899999999999999999987543
No 462
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.59 E-value=0.068 Score=53.91 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..+.|.||+|+||||+++.|+..+.
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6799999999999999999999884
No 463
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.58 E-value=0.049 Score=54.71 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..++|.||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4689999999999999999974
No 464
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.58 E-value=0.023 Score=54.41 Aligned_cols=27 Identities=37% Similarity=0.658 Sum_probs=23.2
Q ss_pred EcCCCCHHHHHHHHHHHHhCCceeecc
Q 007362 331 MGPTGSGKTLLAKTLARHVNVPFVIAD 357 (606)
Q Consensus 331 ~GPpGTGKT~lAralA~~l~~~fi~i~ 357 (606)
.|++|+||||++++|+..++..++.-+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d 27 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGD 27 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCc
Confidence 499999999999999999987666543
No 465
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=2.7 Score=45.92 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.7
Q ss_pred cCCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 324 EKSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 324 ~~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.+..|+|.|--|+||||.|-.+|..+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~ 125 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYY 125 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHH
Confidence 45889999999999999999999877
No 466
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.57 E-value=0.11 Score=49.56 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...+.|.||+|+|||||.++|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3688999999999999999999875
No 467
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.56 E-value=0.023 Score=54.49 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
..++|.||+|+||||+++.|++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 45899999999999999999987643
No 468
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.55 E-value=0.15 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..++|.||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999987
No 469
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.025 Score=56.58 Aligned_cols=23 Identities=48% Similarity=0.703 Sum_probs=21.8
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHh
Q 007362 327 NVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 327 ~vLL~GPpGTGKT~lAralA~~l 349 (606)
-|+|.|+||+|||++|+-||++|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 38999999999999999999998
No 470
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.52 E-value=0.038 Score=53.80 Aligned_cols=34 Identities=35% Similarity=0.547 Sum_probs=26.4
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhC---Cceeecchhhh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVN---VPFVIADATTL 361 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~---~~fi~i~~s~l 361 (606)
|.+.|+||+||||+|+.|+..+. .....++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 78999999999999999999873 34444554443
No 471
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.50 E-value=0.15 Score=49.04 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.-|.+|.++|+|||++|-.+|-..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 357888999999999999888544
No 472
>PRK13764 ATPase; Provisional
Probab=94.49 E-value=0.057 Score=62.17 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
.++|+.||||+||||+++++++.+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999999998874
No 473
>PRK08356 hypothetical protein; Provisional
Probab=94.48 E-value=0.034 Score=54.62 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=22.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCcee
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFV 354 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi 354 (606)
..|+|.||||+||||+|+.|++ .+.+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~i 33 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRV 33 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEE
Confidence 4589999999999999999964 665533
No 474
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=94.44 E-value=0.025 Score=53.75 Aligned_cols=26 Identities=38% Similarity=0.632 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHHhCCceeecchh
Q 007362 334 TGSGKTLLAKTLARHVNVPFVIADAT 359 (606)
Q Consensus 334 pGTGKT~lAralA~~l~~~fi~i~~s 359 (606)
||+||||+++.||+.++.+|+..|..
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~ 26 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDE 26 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHH
Confidence 79999999999999999999987764
No 475
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.44 E-value=0.031 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..|.|.||+|+||||++++|+..+.
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 6788999999999999999999875
No 476
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=94.43 E-value=0.18 Score=62.55 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=19.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
...++|.|+||+||||..=.+.-..
T Consensus 82 ~~vvii~g~TGSGKTTqlPq~lle~ 106 (1283)
T TIGR01967 82 NQVVIIAGETGSGKTTQLPKICLEL 106 (1283)
T ss_pred CceEEEeCCCCCCcHHHHHHHHHHc
Confidence 3679999999999999765544443
No 477
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=94.43 E-value=0.035 Score=58.36 Aligned_cols=35 Identities=34% Similarity=0.627 Sum_probs=30.9
Q ss_pred EEEEcCCCCHHHHHHHHHHHHhCCceeecchhhhh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHVNVPFVIADATTLT 362 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l~ 362 (606)
|++.||+|+|||++|..||+.++..++.+|.-.+.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY 36 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIY 36 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhee
Confidence 78999999999999999999999888888775543
No 478
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.42 E-value=0.061 Score=65.74 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=52.8
Q ss_pred ccCCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh-----hhhh-cCCcccchHHHHHHHHHhhhhhhhhcCCCE
Q 007362 323 LEKSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT-----TLTQ-AGYVGEDVESILYKLLAQAEFNVEAAQQGM 393 (606)
Q Consensus 323 ~~~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s-----~l~~-sg~vG~~~~~~l~~lf~~a~~~l~~a~~~I 393 (606)
.....++|.|++||||||+.+++.+.+ +..++-+-.+ .|.+ .+.....+...+ +.............|
T Consensus 395 ~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~l---l~~~~~~~~l~~~~v 471 (1102)
T PRK13826 395 GPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWE---LRWNQGRDQLDNKTV 471 (1102)
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHH---hhhccCccCCCCCcE
Confidence 345779999999999999999988755 4444432221 1211 122222221111 111111111124579
Q ss_pred EEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 394 VYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 394 LfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
|||||+-++... ....|++.++
T Consensus 472 lVIDEAsMv~~~--------------~m~~Ll~~~~ 493 (1102)
T PRK13826 472 FVLDEAGMVASR--------------QMALFVEAVT 493 (1102)
T ss_pred EEEECcccCCHH--------------HHHHHHHHHH
Confidence 999999988776 7778888775
No 479
>PLN02840 tRNA dimethylallyltransferase
Probab=94.40 E-value=0.037 Score=60.96 Aligned_cols=35 Identities=37% Similarity=0.609 Sum_probs=30.9
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATT 360 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~ 360 (606)
..|+|.||+|+|||+||..||+.++.+++.+|...
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~q 56 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQ 56 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccc
Confidence 56999999999999999999999998887777643
No 480
>PRK06851 hypothetical protein; Provisional
Probab=94.39 E-value=0.31 Score=53.04 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh---CCceeecchh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV---NVPFVIADAT 359 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l---~~~fi~i~~s 359 (606)
.+.++|.|+|||||||+++.++..+ |.......|.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~ 251 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCG 251 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4679999999999999999999877 4444444443
No 481
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.38 E-value=0.1 Score=54.90 Aligned_cols=72 Identities=25% Similarity=0.391 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCC-------------ceeecchhhhhhcCCcccchHHHHHHHHHhhhhhhhhcCC
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNV-------------PFVIADATTLTQAGYVGEDVESILYKLLAQAEFNVEAAQQ 391 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~-------------~fi~i~~s~l~~sg~vG~~~~~~l~~lf~~a~~~l~~a~~ 391 (606)
..=||+.||+|+||||..-++-..+|. .|+.-+-..+.....+|.+..... ..+..+- .-.|
T Consensus 125 ~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~-~aLraAL----ReDP 199 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFA-NALRAAL----REDP 199 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHH-HHHHHHh----hcCC
Confidence 356899999999999988888877763 233333334443444565533222 2222221 1267
Q ss_pred CEEEEcccch
Q 007362 392 GMVYIDEVDK 401 (606)
Q Consensus 392 ~ILfIDEiD~ 401 (606)
-||++-|+-.
T Consensus 200 DVIlvGEmRD 209 (353)
T COG2805 200 DVILVGEMRD 209 (353)
T ss_pred CEEEEecccc
Confidence 8999999874
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.37 E-value=0.032 Score=54.69 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l 349 (606)
|.|.||+|+||||++++|++.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987
No 483
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=94.37 E-value=0.15 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=21.7
Q ss_pred CEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhc
Q 007362 392 GMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEG 430 (606)
Q Consensus 392 ~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg 430 (606)
+.++||++|+++.. .+|+||+.||+
T Consensus 56 ~k~iI~~a~~l~~~--------------A~NaLLK~LEE 80 (206)
T PRK08485 56 EKIIVIAAPSYGIE--------------AQNALLKILEE 80 (206)
T ss_pred cEEEEEchHhhCHH--------------HHHHHHHHhcC
Confidence 45678899999888 99999999995
No 484
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.37 E-value=0.035 Score=54.54 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=23.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
..++|.||+|+|||+|++.|++.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6799999999999999999999875
No 485
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.37 E-value=0.51 Score=56.62 Aligned_cols=25 Identities=40% Similarity=0.465 Sum_probs=22.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVN 350 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~ 350 (606)
+-+++.||+|.||||++..+++..+
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~ 57 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN 57 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC
Confidence 5699999999999999999887655
No 486
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=94.35 E-value=0.071 Score=60.94 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCHHHH
Q 007362 326 SNVLLMGPTGSGKTL 340 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~ 340 (606)
..+++.|++|+||||
T Consensus 67 qvlIviGeTGsGKST 81 (674)
T KOG0922|consen 67 QVLIVIGETGSGKST 81 (674)
T ss_pred CEEEEEcCCCCCccc
Confidence 679999999999997
No 487
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.32 E-value=0.08 Score=66.75 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=49.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh-------CCceeecchh-----hhhhcCCcccchHHHHHHHHHhhh-----hhhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV-------NVPFVIADAT-----TLTQAGYVGEDVESILYKLLAQAE-----FNVEA 388 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l-------~~~fi~i~~s-----~l~~sg~vG~~~~~~l~~lf~~a~-----~~l~~ 388 (606)
..++|.|.+||||||+.+.+...+ +..++-+-.+ .|.+.++ . ...+..++.... .....
T Consensus 853 r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~Gi---~-A~TIasfL~~~~~~~~~~~~~~ 928 (1623)
T PRK14712 853 RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGV---D-AQTLASFLHDTQLQQRSGETPD 928 (1623)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHhCc---h-HhhHHHHhccccchhhcccCCC
Confidence 679999999999999988776543 1223222111 2222232 2 222333332110 00001
Q ss_pred cCCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHh
Q 007362 389 AQQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLE 429 (606)
Q Consensus 389 a~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Le 429 (606)
....||||||+-++... ....|+.+++
T Consensus 929 ~~~~llIVDEASMV~~~--------------~m~~ll~~~~ 955 (1623)
T PRK14712 929 FSNTLFLLDESSMVGNT--------------DMARAYALIA 955 (1623)
T ss_pred CCCcEEEEEccccccHH--------------HHHHHHHhhh
Confidence 23579999999988766 6777777776
No 488
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=94.28 E-value=0.56 Score=51.86 Aligned_cols=156 Identities=17% Similarity=0.286 Sum_probs=89.0
Q ss_pred CCCEEEEcccchhhhhhhccccccCcchhHHHHHHHHHHhceeeecCCCCcccCCCCCcEEEecCceeeeccCCCcChHH
Q 007362 390 QQGMVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDSIQMDTKDILFICGGAFVDLEK 469 (606)
Q Consensus 390 ~~~ILfIDEiD~l~~~r~~~~~~~~~s~~~vq~~LL~~Leg~~~~i~~~g~~~~~~~~~v~idt~nii~I~tgn~~~l~~ 469 (606)
.+-+|+|||++.+-+- .++.+++...+.|+++++... .| ...++.|+++++..
T Consensus 239 ~GLlI~lDE~e~l~kl------~~~~~R~~~ye~lr~lidd~~-----~G------------~~~gL~~~~~gTPe---- 291 (416)
T PF10923_consen 239 KGLLILLDELENLYKL------RNDQAREKNYEALRQLIDDID-----QG------------RAPGLYFVFAGTPE---- 291 (416)
T ss_pred CceEEEEechHHHHhc------CChHHHHHHHHHHHHHHHHHh-----cC------------CCCceEEEEeeCHH----
Confidence 4569999999987543 334445668888999887311 01 23466777777743
Q ss_pred HHHhhhcccCCCcCccccccccccc-chhHhHHHHHhhhcchhhhhccCcccccccCCeEEEcCCcCHHHHHHHHhhhHH
Q 007362 470 TISERRQDSSIGFGAPVRANMRAGV-TDAAVTSSLLESVESSDLIAYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKN 548 (606)
Q Consensus 470 ~i~~~~~~~~igf~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~l~~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~ 548 (606)
++.+. . .|+ +++....+|.+... -.+.+.+-..-+|.+.+|+.+++..++.+
T Consensus 292 f~eD~----r------------rGv~sY~AL~~RL~~~~~--------~~~~~~n~~~pvIrL~~l~~eel~~l~~k--- 344 (416)
T PF10923_consen 292 FFEDG----R------------RGVYSYEALAQRLAEEFF--------ADDGFDNLRAPVIRLQPLTPEELLELLEK--- 344 (416)
T ss_pred HhhCc----c------------ccccccHHHHHHHhcccc--------ccccccCccCceecCCCCCHHHHHHHHHH---
Confidence 22110 0 011 22333333333211 13455666666899999999999888765
Q ss_pred HHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCCh------HH-HHHHHHHHHHHHHHhcCC
Q 007362 549 ALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGA------RG-LRAILESILTEAMYEVRT 606 (606)
Q Consensus 549 ~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GA------R~-L~~~Ie~~l~~al~~~~~ 606 (606)
+..-+.. ..+....++++.++.+++..+ ..+|+ |. |+.+| -+.+.+.+.||
T Consensus 345 -lr~i~a~---~~~~~~~v~d~~l~~~~~~~~-~r~G~~~~~tPR~~ik~fv--~~Ld~~~q~p~ 402 (416)
T PF10923_consen 345 -LRDIYAE---AYGYESRVDDEELKAFAQHVA-GRLGGDVFVTPREFIKDFV--DVLDILEQNPD 402 (416)
T ss_pred -HHHHHHh---hCCCCCCCCHHHHHHHHHHHH-hccCcccccCHHHHHHHHH--HHHHHHHHCCC
Confidence 2222222 234557799999999997743 33443 32 33334 34455555553
No 489
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.27 E-value=0.09 Score=50.66 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=29.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCCceeecchhhh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNVPFVIADATTL 361 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~~fi~i~~s~l 361 (606)
+.|.+.||--||||+|++.||+.+|.++...-.-++
T Consensus 9 K~VailG~ESsGKStLv~kLA~~fnt~~~wEY~Re~ 44 (187)
T COG3172 9 KTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREY 44 (187)
T ss_pred eeeeeecCcccChHHHHHHHHHHhCCCchhHHHHHH
Confidence 579999999999999999999999887664444433
No 490
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.27 E-value=0.099 Score=52.06 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..+.|+||||+|||++|..+|...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHh
Confidence 789999999999999999988653
No 491
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.25 E-value=0.11 Score=61.99 Aligned_cols=19 Identities=42% Similarity=0.590 Sum_probs=16.2
Q ss_pred CcEEEEcCCCCHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKT 344 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAra 344 (606)
..++|.||||+||||-.-.
T Consensus 66 ~vvii~getGsGKTTqlP~ 84 (845)
T COG1643 66 QVVIIVGETGSGKTTQLPQ 84 (845)
T ss_pred CEEEEeCCCCCChHHHHHH
Confidence 6799999999999996543
No 492
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.25 E-value=0.046 Score=53.88 Aligned_cols=38 Identities=29% Similarity=0.483 Sum_probs=29.7
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh-CCceeecchhhhh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV-NVPFVIADATTLT 362 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l-~~~fi~i~~s~l~ 362 (606)
|.-++|.|+||+|||+++..+...+ ...++.++..++.
T Consensus 15 P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp -EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 4778999999999999999999988 6777888877765
No 493
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.23 E-value=0.036 Score=54.46 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.4
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l 349 (606)
+.-|+|.||+|+|||+|++.|.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3679999999999999999998765
No 494
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=94.23 E-value=0.13 Score=57.50 Aligned_cols=34 Identities=38% Similarity=0.571 Sum_probs=29.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHHHhCCc-eeecch
Q 007362 325 KSNVLLMGPTGSGKTLLAKTLARHVNVP-FVIADA 358 (606)
Q Consensus 325 ~~~vLL~GPpGTGKT~lAralA~~l~~~-fi~i~~ 358 (606)
+..|++.|+||+||||+|..||..++.. ++..|.
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~ 289 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDA 289 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhH
Confidence 5789999999999999999999999876 445554
No 495
>PRK14700 recombination factor protein RarA; Provisional
Probab=94.22 E-value=0.15 Score=53.63 Aligned_cols=73 Identities=15% Similarity=0.262 Sum_probs=55.2
Q ss_pred hccCcccccccCCeEEEcCCcCHHHHHHHHhhhHHHHHHHHHHHHhcCCcccccCHHHHHHHHHccCCCCCChHHHHHHH
Q 007362 514 AYGLIPEFVGRFPILVSLTALTEDQLVKVLTEPKNALGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAIL 593 (606)
Q Consensus 514 ~~~l~PeLl~R~d~iI~f~~Ls~eel~~Il~~~l~~L~k~~~~~~~~~~i~l~i~e~al~~La~~a~~~~~GAR~L~~~I 593 (606)
.+.++|+|++|+ .++.|.+|+.+++.+++++.+..- .. ....++.++++++++|++.+ +-.+|..-+.+
T Consensus 20 ~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~-----~~--~~~~~~~i~~~al~~ia~~a---~GDaR~aLN~L 88 (300)
T PRK14700 20 TYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQD-----EV--LAKHKFKIDDGLYNAMHNYN---EGDCRKILNLL 88 (300)
T ss_pred cceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhh-----hc--cCCcCCCcCHHHHHHHHHhc---CCHHHHHHHHH
Confidence 344788999998 699999999999999999764331 00 11235779999999999973 44578888888
Q ss_pred HHHH
Q 007362 594 ESIL 597 (606)
Q Consensus 594 e~~l 597 (606)
|..+
T Consensus 89 E~a~ 92 (300)
T PRK14700 89 ERMF 92 (300)
T ss_pred HHHH
Confidence 8755
No 496
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.21 E-value=0.074 Score=52.51 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHH
Q 007362 326 SNVLLMGPTGSGKTLLAKTLAR 347 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~ 347 (606)
..++|.||.|+||||+.+.|+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4799999999999999999994
No 497
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.19 E-value=0.058 Score=57.12 Aligned_cols=24 Identities=42% Similarity=0.713 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
.++++.||+|+||||+++++...+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC
Confidence 799999999999999999999877
No 498
>PLN02348 phosphoribulokinase
Probab=94.18 E-value=0.44 Score=52.24 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHhCC
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHVNV 351 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l~~ 351 (606)
..|-|.|++|+||||+|+.|++.++.
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 56889999999999999999999863
No 499
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=94.16 E-value=0.13 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCHHHHHHHHHHHHh
Q 007362 326 SNVLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 326 ~~vLL~GPpGTGKT~lAralA~~l 349 (606)
..++|+||...|||++.|.++-..
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ 67 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIV 67 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHh
Confidence 469999999999999999999654
No 500
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.13 E-value=0.047 Score=52.54 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=21.2
Q ss_pred EEEEcCCCCHHHHHHHHHHHHh
Q 007362 328 VLLMGPTGSGKTLLAKTLARHV 349 (606)
Q Consensus 328 vLL~GPpGTGKT~lAralA~~l 349 (606)
|+|.|++|+||||+++.|++.+
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999988
Done!